| RelEx—Relation extraction using dependency parse trees K Fundel, R Küffner, R Zimmer Bioinformatics 23 (3), 365-371, 2007 | 860 | 2007 |
| ProMiner: rule-based protein and gene entity recognition D Hanisch, K Fundel, HT Mevissen, R Zimmer, J Fluck BMC bioinformatics 6 (Suppl 1), S14, 2005 | 451 | 2005 |
| Large‐scale gene expression profiling reveals major pathogenetic pathways of cartilage degeneration in osteoarthritis T Aigner, K Fundel, J Saas, PM Gebhard, J Haag, T Weiss, A Zien, ... Arthritis & Rheumatism: Official Journal of the American College of …, 2006 | 434 | 2006 |
| Overview of BioCreative II gene normalization AA Morgan, Z Lu, X Wang, AM Cohen, J Fluck, P Ruch, A Divoli, K Fundel, ... Genome biology 9 (Suppl 2), S3, 2008 | 426 | 2008 |
| Activation of interleukin-1 signaling cascades in normal and osteoarthritic articular cartilage Z Fan, S Söder, S Oehler, K Fundel, T Aigner The American journal of pathology 171 (3), 938-946, 2007 | 197 | 2007 |
| Peripheral monocytes are functionally altered and invade the CNS in ALS patients L Zondler, K Müller, S Khalaji, C Bliederhäuser, WP Ruf, V Grozdanov, ... Acta neuropathologica 132 (3), 391-411, 2016 | 194 | 2016 |
| Reliable gene signatures for microarray classification: assessment of stability and performance CA Davis, F Gerick, V Hintermair, CC Friedel, K Fundel, R Küffner, ... Bioinformatics 22 (19), 2356-2363, 2006 | 129 | 2006 |
| Comparison of normalization methods for Illumina BeadChip HumanHT-12 v3 R Schmid, P Baum, C Ittrich, K Fundel-Clemens, W Huber, B Brors, R Eils, ... BMC genomics 11 (1), 349, 2010 | 121 | 2010 |
| Senescent cells suppress macrophage-mediated corpse removal via upregulation of the CD47-QPCT/L axis D Schloesser, L Lindenthal, J Sauer, KJ Chung, T Chavakis, E Griesser, ... Journal of Cell Biology 222 (2), e202207097, 2022 | 89 | 2022 |
| Gene and protein nomenclature in public databases K Fundel, R Zimmer BMC bioinformatics 7 (1), 372, 2006 | 76 | 2006 |
| A simple approach for protein name identification: prospects and limits K Fundel, D Güttler, R Zimmer, J Apostolakis BMC bioinformatics 6 (Suppl 1), S15, 2005 | 65 | 2005 |
| Recapitulating idiopathic pulmonary fibrosis related alveolar epithelial dysfunction in a human iPSC‐derived air‐liquid interface model E Schruf, V Schroeder, HQ Le, T Schönberger, D Raedel, EL Stewart, ... The FASEB Journal 34 (6), 7825-7846, 2020 | 60 | 2020 |
| Normalization strategies for mRNA expression data in cartilage research K Fundel, J Haag, PM Gebhard, R Zimmer, T Aigner Osteoarthritis and cartilage 16 (8), 947-955, 2008 | 47 | 2008 |
| Expert knowledge without the expert: integrated analysis of gene expression and literature to derive active functional contexts R Küffner, K Fundel, R Zimmer Bioinformatics 21 (suppl_2), ii259-ii267, 2005 | 45 | 2005 |
| High-yield human induced pluripotent stem cell-derived monocytes and macrophages are functionally comparable with primary cells D Cui, A Franz, SA Fillon, L Jannetti, T Isambert, K Fundel-Clemens, ... Frontiers in cell and developmental biology 9, 656867, 2021 | 37 | 2021 |
| ProMiner: Organism-specific protein name detection using approximate string matching D Hanisch, K Fundel, HT Mevissen, R Zimmer, J Fluck BioCreative: Critical Assessment for Information Extraction in Biology, 2004 | 32 | 2004 |
| CD276 is an important player in macrophage recruitment into the tumor and an upstream regulator for PAI-1 S Durlanik, K Fundel-Clemens, C Viollet, HJ Huber, M Lenter, K Kitt, ... Scientific reports 11 (1), 14849, 2021 | 31 | 2021 |
| Activation of the kynurenine pathway and mitochondrial respiration to face allostatic load in a double-hit model of stress V Nold, C Sweatman, A Karabatsiakis, C Böck, T Bretschneider, ... Psychoneuroendocrinology 107, 148-159, 2019 | 31 | 2019 |
| Antifibrotic Drug Nintedanib Inhibits CSF1R to Promote IL-4–Associated Tissue Repair Macrophages CK Watson, D Schloesser, K Fundel-Clemens, C Lerner, S Gabler, ... American journal of respiratory cell and molecular biology 68 (4), 366-380, 2023 | 29 | 2023 |
| Normalization and gene p-value estimation: issues in microarray data processing K Fundel, R Küffner, T Aigner, R Zimmer Bioinformatics and biology insights 2, BBI. S441, 2008 | 29 | 2008 |
