| Coarse-Grained Protein Models and Their Applications S Kmiecik, D Gront, M Kolinski, L Wieteska, AE Dawid, A Kolinski Chemical Reviews 116 (14), 7898-7936, 2016 | 1343 | 2016 |
| CABS-flex 2.0: a web server for fast simulations of flexibility of protein structures A Kuriata, AM Gierut, T Oleniecki, MP Ciemny, A Kolinski, M Kurcinski, ... Nucleic acids research 46 (W1), W338-W343, 2018 | 476 | 2018 |
| CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site M Kurcinski, M Jamroz, M Blaszczyk, A Kolinski, S Kmiecik Nucleic acids research 43 (W1), W419-W424, 2015 | 443 | 2015 |
| Protein–peptide docking: opportunities and challenges M Ciemny, M Kurcinski, K Kamel, A Kolinski, N Alam, O Schueler-Furman, ... Drug discovery today 23 (8), 1530-1537, 2018 | 356 | 2018 |
| AGGRESCAN3D (A3D): server for prediction of aggregation properties of protein structures R Zambrano, M Jamroz, A Szczasiuk, J Pujols, S Kmiecik, S Ventura Nucleic acids research 43 (W1), W306-W313, 2015 | 284 | 2015 |
| CABS-flex: server for fast simulation of protein structure fluctuations M Jamroz, A Kolinski, S Kmiecik Nucleic acids research, W427-W431, 2013 | 203 | 2013 |
| Aggrescan3D (A3D) 2.0: prediction and engineering of protein solubility A Kuriata, V Iglesias, J Pujols, M Kurcinski, S Kmiecik, S Ventura Nucleic acids research 47 (W1), W300–W307, 2019 | 189 | 2019 |
| Modeling of protein–peptide interactions using the CABS-dock web server for binding site search and flexible docking M Blaszczyk, M Kurcinski, M Kouza, L Wieteska, A Debinski, A Kolinski, ... Methods 93, 72-83, 2016 | 186 | 2016 |
| Backbone building from quadrilaterals: a fast and accurate algorithm for protein backbone reconstruction from alpha carbon coordinates D Gront, S Kmiecik, A Kolinski Journal of computational chemistry 28 (9), 1593-1597, 2007 | 143 | 2007 |
| Folding pathway of the B1 domain of protein G explored by multiscale modeling S Kmiecik, A Kolinski Biophysical journal 94 (3), 726-736, 2008 | 136 | 2008 |
| CABS-flex standalone: a simulation environment for fast modeling of protein flexibility M Kurcinski, T Oleniecki, MP Ciemny, A Kuriata, A Kolinski, S Kmiecik Bioinformatics 35 (4), 694-695, 2019 | 134 | 2019 |
| Characterization of protein-folding pathways by reduced-space modeling S Kmiecik, A Kolinski Proceedings of the National Academy of Sciences 104 (30), 12330-12335, 2007 | 125 | 2007 |
| CABS-fold: server for the de novo and consensus-based prediction of protein structure M Blaszczyk, M Jamroz, S Kmiecik, A Kolinski Nucleic acids research 41 (W1), W406-W411, 2013 | 120 | 2013 |
| CABS-flex predictions of protein flexibility compared with NMR ensembles M Jamroz, A Kolinski, S Kmiecik Bioinformatics 30 (15), 2150-2154, 2014 | 108 | 2014 |
| Consistent view of protein fluctuations from all-atom molecular dynamics and coarse-grained dynamics with knowledge-based force-field M Jamroz, M Orozco, A Kolinski, S Kmiecik Journal of Chemical Theory and Computation 9 (1), 119-125, 2013 | 107 | 2013 |
| Flexible docking of peptides to proteins using CABS‐dock M Kurcinski, A Badaczewska‐Dawid, M Kolinski, A Kolinski, S Kmiecik Protein Science 29 (1), 211-222, 2020 | 91 | 2020 |
| CABS-dock standalone: a toolbox for flexible protein–peptide docking M Kurcinski, M Pawel Ciemny, T Oleniecki, A Kuriata, ... Bioinformatics 35 (20), 4170–4172, 2019 | 83 | 2019 |
| Computational reconstruction of atomistic protein structures from coarse-grained models AE Badaczewska-Dawid, A Kolinski, S Kmiecik Computational and Structural Biotechnology Journal 18, 162-176, 2020 | 76 | 2020 |
| Modeling of protein structural flexibility and large-scale dynamics: Coarse-grained simulations and elastic network models S Kmiecik, M Kouza, AE Badaczewska-Dawid, A Kloczkowski, A Kolinski International journal of molecular sciences 19 (11), 3496, 2018 | 75 | 2018 |
| Towards the high-resolution protein structure prediction. Fast refinement of reduced models with all-atom force field S Kmiecik, D Gront, A Kolinski BMC structural biology 7 (1), 43, 2007 | 62 | 2007 |
Andrzej KolinskiProfessor, University of WarsawVerified email at chem.uw.edu.pl
