| PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ... Genome research 29 (11), 1860-1877, 2019 | 114 | 2019 |
| CoLoRMap: correcting long reads by mapping short reads E Haghshenas, F Hach, SC Sahinalp, C Chauve Bioinformatics 32 (17), i545-i551, 2016 | 73 | 2016 |
| HASLR: fast hybrid assembly of long reads E Haghshenas, H Asghari, J Stoye, C Chauve, F Hach Iscience 23 (8), 2020 | 63 | 2020 |
| Creating discriminative models for time series classification and clustering by HMM ensembles N Asadi, A Mirzaei, E Haghshenas IEEE transactions on cybernetics 46 (12), 2899-2910, 2015 | 35 | 2015 |
| lordFAST: sensitive and fast alignment search tool for long noisy read sequencing data E Haghshenas, SC Sahinalp, F Hach Bioinformatics 35 (1), 20-27, 2019 | 29 | 2019 |
| Introducing a new intelligent adaptive learning content generation method E Haghshenas, A Mazaheri, A Gholipour, M Tavakoli, N Zandi, ... The Second International Conference on E-Learning and E-Teaching (ICELET …, 2010 | 22 | 2010 |
| CircMiner: accurate and rapid detection of circular RNA through splice-aware pseudo-alignment scheme H Asghari, YY Lin, Y Xu, E Haghshenas, CC Collins, F Hach Bioinformatics 36 (12), 3703-3711, 2020 | 18 | 2020 |
| Genotyping and copy number analysis of immunoglobin heavy chain variable genes using long reads M Ford, E Haghshenas, CT Watson, SC Sahinalp Iscience 23 (3), 2020 | 16 | 2020 |
| LRCstats, a tool for evaluating long reads correction methods S La, E Haghshenas, C Chauve Bioinformatics 33 (22), 3652-3654, 2017 | 11 | 2017 |
| Multiple Observations HMM Learning by Aggregating Ensemble Models N Asadi, A Mirzaei, E Haghshenas Signal Processing, IEEE Transactions on 61 (22), 5767-5776, 2013 | 7 | 2013 |
| HASLR: Fast hybrid assembly of long reads. iScience, 23 (8), 101389 E Haghshenas, H Asghari, J Stoye, C Chauve, F Hach | 5 | 2020 |
| Genotyping and copy number analysis of immunoglobulin heavy chain variable genes using long reads M Ford, E Haghshenas, CT Watson, SC Sahinalp Iscience 23 (9), 2020 | 4 | 2020 |
| SAGE2: parallel human genome assembly M Molnar, E Haghshenas, L Ilie Bioinformatics 34 (4), 678-680, 2018 | 4 | 2018 |
| Development of a methylation-based, tissue-agnostic test for the detection of molecular residual disease by circulating tumor DNA. JPYC Shen, J Reiter, J Babiarz, P Srinivasan, F Lu, E Haghshenas, ... Journal of Clinical Oncology 43 (4_suppl), 266-266, 2025 | 2 | 2025 |
| An intelligent method for customizable adaptive learning content generation E Haghshenas, A Mazaheri, A Gholipour, M Tavakoli International Journal of Information and Communication Technology Research 3 …, 2011 | 2 | 2011 |
| Novel expression biomarkers via prediction of response to FOLFIRINOX (FFX) treatment for PDAC H Asghari, E Haghshenas, R Thomas, E Schultz, R Patro, S Skrzypczak, ... Cancer Research 83 (7_Supplement), 1400-1400, 2023 | 1 | 2023 |
| Validation of a methylation-based, tissue-free MRD assay in colorectal cancer patients from the GALAXY study Y Nakamura, JG Reiter, P Natarajan, J Babiarz, P Srinivasan, J Joshi, ... npj Precision Oncology, 2026 | | 2026 |
| Quantification of circulating tumor DNA (ctDNA) using a methylation-based, tissue-free colorectal cancer (CRC) test for the detection of molecular residual disease (MRD). Y Nakamura, P Parsana, TC Chen, N Liang, A Kennedy, V Rodriguez, ... Journal of Clinical Oncology 44 (2_suppl), 217-217, 2026 | | 2026 |
| 734MO Performance of a blood-based, early cancer detection (ECD) screening test for colorectal cancer (CRC) in cell-free (cf) DNA Y Nakamura, J Reiter, J Babiarz, P Srinivasan, E Haghshenas, TC Chen, ... Annals of Oncology 36, S513, 2025 | | 2025 |
| Development of a methylation-based, tissue-free test for the detection of molecular residual disease by circulating tumor DNA. JPYC Shen, J Reiter, J Babiarz, P Srinivasan, F Lu, E Haghshenas, ... Journal of Clinical Oncology 43 (16_suppl), 3048-3048, 2025 | | 2025 |
Faraz HachAssociate Professor at University of British ColumbiaVerified email at ubc.ca
