| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 3085* | 2020 |
| Spatial genomic heterogeneity within localized, multifocal prostate cancer PC Boutros, M Fraser, NJ Harding, R De Borja, D Trudel, E Lalonde, ... Nature genetics 47 (7), 736-745, 2015 | 593 | 2015 |
| mrsFAST: a cache-oblivious algorithm for short-read mapping F Hach, F Hormozdiari, C Alkan, F Hormozdiari, I Birol, EE Eichler, ... Nature methods 7 (8), 576-577, 2010 | 355 | 2010 |
| Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery F Hormozdiari, I Hajirasouliha, P Dao, F Hach, D Yorukoglu, C Alkan, ... Bioinformatics 26 (12), i350-i357, 2010 | 281 | 2010 |
| From sequence to molecular pathology, and a mechanism driving the neuroendocrine phenotype in prostate cancer AV Lapuk, C Wu, AW Wyatt, A McPherson, BJ McConeghy, S Brahmbhatt, ... The Journal of Pathology 227 (3), 286-297, 2012 | 228 | 2012 |
| SCALCE: boosting Sequence Compression Algorithms using Locally Consistent Encoding F Hach, I Numanagić, C Alkan, SC Sahinalp Bioinformatics 28 (23), 3051-3057., 2012 | 188 | 2012 |
| An androgen receptor switch underlies lineage infidelity in treatment-resistant prostate cancer A Davies, S Nouruzi, D Ganguli, T Namekawa, D Thaper, S Linder, ... Nature cell biology 23 (9), 1023-1034, 2021 | 172 | 2021 |
| BAP1 haploinsufficiency predicts a distinct immunogenic class of malignant peritoneal mesothelioma R Shrestha, N Nabavi, YY Lin, F Mo, S Anderson, S Volik, HH Adomat, ... Genome medicine 11 (1), 8, 2019 | 131 | 2019 |
| Comparison of high-throughput sequencing data compression tools I Numanagić, JK Bonfield, F Hach, J Voges, J Ostermann, C Alberti, ... nature methods 13 (12), 1005-1008, 2016 | 131 | 2016 |
| Alu repeat discovery and characterization within human genomes F Hormozdiari, C Alkan, M Ventura, I Hajirasouliha, M Malig, F Hach, ... Genome Research 21 (6), 840-849, 2011 | 118 | 2011 |
| PhISCS: a combinatorial approach for subperfect tumor phylogeny reconstruction via integrative use of single-cell and bulk sequencing data S Malikic, FR Mehrabadi, S Ciccolella, MK Rahman, C Ricketts, ... Genome research 29 (11), 1860-1877, 2019 | 114 | 2019 |
| Fast characterization of segmental duplications in genome assemblies I Numanagić, AS Gökkaya, L Zhang, B Berger, C Alkan, F Hach Bioinformatics 34 (17), i706-i714, 2018 | 95 | 2018 |
| mrsFAST-Ultra: a compact, SNP-aware mapper for high performance sequencing applications F Hach, I Sarrafi, F Hormozdiari, C Alkan, EE Eichler, SC Sahinalp Nucleic acids research 42 (W1), W494-W500, 2014 | 82 | 2014 |
| Integrated genome and transcriptome sequencing identifies a novel form of hybrid and aggressive prostate cancer C Wu, AW Wyatt, AV Lapuk, A McPherson, BJ McConeghy, RH Bell, ... The Journal of pathology 227 (1), 53-61, 2012 | 81 | 2012 |
| CoLoRMap: correcting long reads by mapping short reads E Haghshenas, F Hach, SC Sahinalp, C Chauve Bioinformatics 32 (17), i545-i551, 2016 | 73 | 2016 |
| SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA C Kockan, F Hach, I Sarrafi, RH Bell, B McConeghy, K Beja, A Haegert, ... Bioinformatics 33 (1), 26-34, 2017 | 72 | 2017 |
| DeeZ: reference-based compression by local assembly F Hach, I Numanagic, SC Sahinalp Nature methods 11 (11), 1082-1084, 2014 | 71 | 2014 |
| CLIIQ: Accurate comparative detection and quantification of expressed isoforms in a population YY Lin, P Dao, F Hach, M Bakhshi, F Mo, A Lapuk, C Collins, SC Sahinalp International Workshop on Algorithms in Bioinformatics, 178-189, 2012 | 68 | 2012 |
| Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples MH Bailey, WU Meyerson, LJ Dursi, LB Wang, G Dong, WW Liang, ... Nature communications 11 (1), 4748, 2020 | 64 | 2020 |
| HASLR: fast hybrid assembly of long reads E Haghshenas, H Asghari, J Stoye, C Chauve, F Hach Iscience 23 (8), 2020 | 63 | 2020 |
S. Cenk SahinalpCancer Data Science Labotatory, National Cancer Institute, NIHVerified email at nih.gov
