| The Capsaspora genome reveals a complex unicellular prehistory of animals H Suga, Z Chen, A De Mendoza, A Sebé-Pedrós, MW Brown, E Kramer, ... Nature communications 4 (1), 2325, 2013 | 361 | 2013 |
| Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages A de Mendoza, A Sebé-Pedrós, MS Šestak, M Matejčić, G Torruella, ... Proceedings of the National Academy of Sciences 110 (50), E4858-E4866, 2013 | 275 | 2013 |
| Unexpected Repertoire of Metazoan Transcription Factors in the Unicellular Holozoan Capsaspora owczarzaki A Sebé-Pedrós, A de Mendoza, BF Lang, BM Degnan, I Ruiz-Trillo Molecular biology and evolution 28 (3), 1241-1254, 2011 | 249 | 2011 |
| Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi G Torruella, A De Mendoza, X Grau-Bové, M Antó, MA Chaplin, ... Current Biology 25 (18), 2404-2410, 2015 | 237 | 2015 |
| The evolution of the GPCR signaling system in eukaryotes: modularity, conservation, and the transition to metazoan multicellularity A De Mendoza, A Sebe-Pedros, I Ruiz-Trillo Genome biology and evolution 6 (3), 606-619, 2014 | 226 | 2014 |
| Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability A de Mendoza, TV Nguyen, E Ford, D Poppe, S Buckberry, J Pflueger, ... Genome Biology 23 (1), 163, 2022 | 173* | 2022 |
| Evolution of DNA methylome diversity in eukaryotes A de Mendoza, R Lister, O Bogdanovic Journal of Molecular Biology 432 (6), 1687-1705, 2020 | 157 | 2020 |
| Sterol and genomic analyses validate the sponge biomarker hypothesis DA Gold, J Grabenstatter, A De Mendoza, A Riesgo, I Ruiz-Trillo, ... Proceedings of the National Academy of Sciences 113 (10), 2684-2689, 2016 | 157 | 2016 |
| Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming AS Knaupp, S Buckberry, J Pflueger, SM Lim, E Ford, MR Larcombe, ... Cell stem cell 21 (6), 834-845. e6, 2017 | 150 | 2017 |
| Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases H Suga, M Dacre, A de Mendoza, K Shalchian-Tabrizi, G Manning, ... Science Signalling 5 (222), ra35, 2012 | 140 | 2012 |
| Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri NJ Kenny, WR Francis, RE Rivera-Vicéns, K Juravel, A de Mendoza, ... Nature Communications 11 (1), 3676, 2020 | 133 | 2020 |
| The emergence of the brain non-CpG methylation system in vertebrates A de Mendoza, D Poppe, S Buckberry, J Pflueger, CB Albertin, T Daish, ... Nature ecology & evolution 5 (3), 369-378, 2021 | 127 | 2021 |
| Evolution of the MAGUK protein gene family in premetazoan lineages A De Mendoza, H Suga, I Ruiz-Trillo BMC evolutionary biology 10 (1), 93, 2010 | 125 | 2010 |
| Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences D Yu, Y Ren, M Uesaka, AJS Beavan, M Muffato, J Shen, Y Li, I Sato, ... Nature Ecology & Evolution 8 (3), 519-535, 2024 | 113 | 2024 |
| Enteric neurons increase maternal food intake during reproduction D Hadjieconomou, G King, P Gaspar, A Mineo, L Blackie, T Ameku, ... Nature 587 (7834), 455-459, 2020 | 110 | 2020 |
| Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals A De Mendoza, H Suga, J Permanyer, M Irimia, I Ruiz-Trillo elife 4, e08904, 2015 | 98 | 2015 |
| Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings I Almudi, J Vizueta, CDR Wyatt, A de Mendoza, F Marlétaz, PN Firbas, ... Nature Communications 11 (1), 1-11, 2020 | 90 | 2020 |
| Convergent evolution of a vertebrate-like methylome in a marine sponge A de Mendoza, WL Hatleberg, K Pang, S Leininger, O Bogdanovic, ... Nature ecology & evolution 3 (10), 1464-1473, 2019 | 84 | 2019 |
| Transient naive reprogramming corrects hiPS cells functionally and epigenetically S Buckberry, X Liu, D Poppe, JP Tan, G Sun, J Chen, TV Nguyen, ... Nature 620 (7975), 863-872, 2023 | 81 | 2023 |
| Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons A de Mendoza, A Bonnet, DB Vargas-Landin, N Ji, H Li, F Yang, L Li, ... Nature communications 9 (1), 1341, 2018 | 80 | 2018 |
Iñaki Ruiz-TrilloICREA research professor at Institut de Biologia Evolutiva (CSIC-UPF)Verified email at ibe.upf-csic.es
