| Automated reconstruction of whole-genome phylogenies from short-sequence reads F Bertels, OK Silander, M Pachkov, PB Rainey, E Van Nimwegen Molecular biology and evolution 31 (5), 1077-1088, 2014 | 523 | 2014 |
| Rapid and inexpensive whole-genome sequencing of SARS-CoV-2 using 1200 bp tiled amplicons and Oxford Nanopore Rapid Barcoding NE Freed, M Vlková, MB Faisal, OK Silander Biology Methods and Protocols 5 (1), bpaa014, 2020 | 302 | 2020 |
| A Genome-Wide Analysis of Promoter-Mediated Phenotypic Noise in Escherichia coli OK Silander, N Nikolic, A Zaslaver, A Bren, U Kikoin, Ilya, Alon, ... PLoS Genetics, 2012 | 225 | 2012 |
| Understanding the evolutionary fate of finite populations: the dynamics of mutational effects OK Silander, O Tenaillon, L Chao PLoS biology 5 (4), e94, 2007 | 225 | 2007 |
| Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch Á O'Toole, V Hill, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ... Wellcome Open Research 6, 121, 2021 | 216 | 2021 |
| Epistasis between deleterious mutations and the evolution of recombination RD Kouyos, OK Silander, S Bonhoeffer Trends in ecology & evolution 22 (6), 308-315, 2007 | 181 | 2007 |
| Monitoring single-cell gene regulation under dynamically controllable conditions with integrated microfluidics and software M Kaiser, F Jug, T Julou, S Deshpande, T Pfohl, OK Silander, G Myers, ... Nature communications 9 (1), 212, 2018 | 155 | 2018 |
| Testing the advantages and disadvantages of short-and long-read eukaryotic metagenomics using simulated reads WS Pearman, NE Freed, OK Silander BMC Bioinformatics 21, 1-15, 2020 | 148 | 2020 |
| Expression noise facilitates the evolution of gene regulation L Wolf, OK Silander, E van Nimwegen eLife 4, e05856, 2015 | 146 | 2015 |
| Alterations of the X-linked lymphoproliferative disease geneSH2D1A in common variable immunodeficiency syndrome M Morra, O Silander, S Calpe, M Choi, H Oettgen, L Myers, A Etzioni, ... Blood, The Journal of the American Society of Hematology 98 (5), 1321-1325, 2001 | 143 | 2001 |
| Characterization of SH2D1A missense mutations identified in X-linked lymphoproliferative disease patients M Morra, M Simarro-Grande, M Martin, ASI Chen, A Lanyi, O Silander, ... Journal of Biological Chemistry 276 (39), 36809-36816, 2001 | 111 | 2001 |
| A simple screen to identify promoters conferring high levels of phenotypic noise NE Freed, OK Silander, B Stecher, A Böhm, WD Hardt, M Ackermann PLoS genetics 4 (12), e1000307, 2008 | 106 | 2008 |
| Patterns of evolutionary conservation of essential genes correlate with their compensability T Bergmiller, M Ackermann, OK Silander PLoS genetics 8 (6), e1002803, 2012 | 104 | 2012 |
| Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli N Hofsteenge, E van Nimwegen, OK Silander BMC microbiology 13 (1), 25, 2013 | 100 | 2013 |
| The predictability of molecular evolution during functional innovation D Blank, L Wolf, M Ackermann, OK Silander Proceedings of the National Academy of Sciences 111 (8), 3044-3049, 2014 | 92 | 2014 |
| Quantifying organismal complexity using a population genetic approach O Tenaillon, OK Silander, JP Uzan, L Chao PloS one 2 (2), e217, 2007 | 90 | 2007 |
| Widespread genetic exchange among terrestrial bacteriophages OK Silander, DM Weinreich, KM Wright, KJ O'Keefe, CU Rang, PE Turner, ... Proceedings of the National Academy of Sciences 102 (52), 19009-19014, 2005 | 76 | 2005 |
| Opposite effects of KCTD subunit domains on GABAB receptor-mediated desensitization R Seddik, SP Jungblut, OK Silander, M Rajalu, T Fritzius, V Besseyrias, ... Journal of Biological Chemistry 287 (47), 39869-39877, 2012 | 63 | 2012 |
| Use of genomics to track coronavirus disease outbreaks, New Zealand JL Geoghegan, J Douglas, X Ren, M Storey, J Hadfield, OK Silander, ... Emerging Infectious Diseases 27 (5), 1317, 2021 | 49 | 2021 |
| Bacterial lipopolysaccharide modulates immune response in the colorectal tumor microenvironment AK Sulit, M Daigneault, E Allen-Vercoe, OK Silander, B Hock, J McKenzie, ... NPJ biofilms and microbiomes 9 (1), 59, 2023 | 36 | 2023 |
Nikki E. FreedUniversity of Auckland, New ZealandVerified email at auckland.ac.nz
