| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update Nucleic Acids Research 50 (W1), W345-W351, 2022 | 613 | 2022 |
| Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes F Zambelli, G Pesole, G Pavesi Nucleic acids research 37 (suppl_2), W247-W252, 2009 | 467 | 2009 |
| The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update Nucleic acids research 52 (W1), W83-W94, 2024 | 455 | 2024 |
| Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities M Chiara, AM D’Erchia, C Gissi, C Manzari, A Parisi, N Resta, F Zambelli, ... Briefings in Bioinformatics 22 (2), 616-630, 2021 | 278 | 2021 |
| DOME: recommendations for supervised machine learning validation in biology I Walsh, D Fishman, D Garcia-Gasulla, T Titma, G Pollastri, J Harrow, ... Nature methods 18 (10), 1122-1127, 2021 | 234 | 2021 |
| Motif discovery and transcription factor binding sites before and after the next-generation sequencing era F Zambelli, G Pesole, G Pavesi Briefings in bioinformatics 14 (2), 225-237, 2013 | 211 | 2013 |
| Tools and data services registry: a community effort to document bioinformatics resources J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ... Nucleic acids research 44 (D1), D38-D47, 2016 | 206 | 2016 |
| Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis V Gregis, F Andrés, A Sessa, RF Guerra, S Simonini, JL Mateos, S Torti, ... Genome biology 14 (6), R56, 2013 | 180 | 2013 |
| A perspective of promoter architecture from the CCAAT box D Dolfini, F Zambelli, G Pavesi, R Mantovani Cell cycle 8 (24), 4127-4137, 2009 | 167 | 2009 |
| SpliceAid-F: a database of human splicing factors and their RNA-binding sites M Giulietti, F Piva, M D’Antonio, P D’Onorio De Meo, D Paoletti, ... Nucleic acids research 41 (D1), D125-D131, 2013 | 155 | 2013 |
| miR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth M Mihailovich, M Bremang, V Spadotto, D Musiani, E Vitale, G Varano, ... Nature communications 6 (1), 8725, 2015 | 120 | 2015 |
| PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments F Zambelli, G Pesole, G Pavesi Nucleic acids research 41 (W1), W535-W543, 2013 | 103 | 2013 |
| Mapping the global chromatin connectivity network for Sox2 function in neural stem cell maintenance JA Bertolini, R Favaro, Y Zhu, M Pagin, CY Ngan, CH Wong, H Tjong, ... Cell stem cell 24 (3), 462-476. e6, 2019 | 101 | 2019 |
| Epigenetic signatures of stress adaptation and flowering regulation in response to extended drought and recovery in Zea mays C Forestan, S Farinati, F Zambelli, G Pavesi, V Rossi, S Varotto Plant, cell & environment 43 (1), 55-75, 2020 | 91 | 2020 |
| MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes G Pavesi, P Mereghetti, F Zambelli, M Stefani, G Mauri, G Pesole Nucleic acids research 34 (suppl_2), W566-W570, 2006 | 91 | 2006 |
| The bio.tools registry of software tools and data resources for the life sciences J Ison, H Ienasescu, P Chmura, E Rydza, H Ménager, M Kalaš, ... Genome biology 20 (1), 164, 2019 | 85 | 2019 |
| INDIGO-DataCloud: A data and computing platform to facilitate seamless access to e-infrastructures D Salomoni, I Campos, L Gaido, JM de Lucas, P Solagna, J Gomes, ... arXiv preprint arXiv:1711.01981, 2017 | 77 | 2017 |
| Resetting cancer stem cell regulatory nodes upon MYC inhibition S Galardi, M Savino, F Scagnoli, S Pellegatta, F Pisati, F Zambelli, B Illi, ... EMBO reports 17 (12), 1872-1889, 2016 | 70 | 2016 |
| WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences G Pavesi, F Zambelli, G Pesole BMC bioinformatics 8 (1), 46, 2007 | 67 | 2007 |
| ELIXIR-IT HPC@ CINECA: high performance computing resources for the bioinformatics community T Castrignanò, S Gioiosa, T Flati, M Cestari, E Picardi, M Chiara, M Fratelli, ... BMC bioinformatics 21 (Suppl 10), 352, 2020 | 64 | 2020 |
Giulio PavesiProfessor of Molecular Biology (Bioinformatics), University of Milano, ItalyVerified email at unimi.it
