| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 4125 | 2005 |
| Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005 | 1652 | 2005 |
| Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes G Pavesi, P Mereghetti, G Mauri, G Pesole Nucleic acids research 32 (suppl_2), W199-W203, 2004 | 658 | 2004 |
| An algorithm for finding signals of unknown length in DNA sequences G Pavesi, G Mauri, G Pesole Bioinformatics 17 (suppl_1), S207-S214, 2001 | 492 | 2001 |
| Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes F Zambelli, G Pesole, G Pavesi Nucleic acids research 37 (suppl_2), W247-W252, 2009 | 467 | 2009 |
| UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs G Grillo, A Turi, F Licciulli, F Mignone, S Liuni, S Banfi, VA Gennarino, ... Nucleic acids research 38 (suppl_1), D75-D80, 2010 | 371 | 2010 |
| Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities M Chiara, AM D’Erchia, C Gissi, C Manzari, A Parisi, N Resta, F Zambelli, ... Briefings in Bioinformatics 22 (2), 616-630, 2021 | 278 | 2021 |
| Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing DS Horner, G Pavesi, T Castrignano, PDO De Meo, S Liuni, M Sammeth, ... Briefings in bioinformatics 11 (2), 181-197, 2010 | 267 | 2010 |
| Tissue-specific mtDNA abundance from exome data and its correlation with mitochondrial transcription, mass and respiratory activity AM D'Erchia, A Atlante, G Gadaleta, G Pavesi, M Chiara, C De Virgilio, ... Mitochondrion 20, 13-21, 2014 | 237 | 2014 |
| Motif discovery and transcription factor binding sites before and after the next-generation sequencing era F Zambelli, G Pesole, G Pavesi Briefings in bioinformatics 14 (2), 225-237, 2013 | 211 | 2013 |
| Identification of pathways directly regulated by SHORT VEGETATIVE PHASE during vegetative and reproductive development in Arabidopsis V Gregis, F Andrés, A Sessa, RF Guerra, S Simonini, JL Mateos, S Torti, ... Genome biology 14 (6), R56, 2013 | 180 | 2013 |
| A perspective of promoter architecture from the CCAAT box D Dolfini, F Zambelli, G Pavesi, R Mantovani Cell cycle 8 (24), 4127-4137, 2009 | 168 | 2009 |
| NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors JD Fleming, G Pavesi, P Benatti, C Imbriano, R Mantovani, K Struhl Genome research 23 (8), 1195-1209, 2013 | 157 | 2013 |
| SpliceAid-F: a database of human splicing factors and their RNA-binding sites M Giulietti, F Piva, M D’Antonio, P D’Onorio De Meo, D Paoletti, ... Nucleic acids research 41 (D1), D125-D131, 2013 | 155 | 2013 |
| The histone-like NF-Y is a bifunctional transcription factor M Ceribelli, D Dolfini, D Merico, R Gatta, AM Vigano, G Pavesi, ... Molecular and cellular biology 28 (6), 2047-2058, 2008 | 146 | 2008 |
| In silico representation and discovery of transcription factor binding sites G Pavesi, G Mauri, G Pesole Briefings in bioinformatics 5 (3), 217-236, 2004 | 135 | 2004 |
| miR-17-92 fine-tunes MYC expression and function to ensure optimal B cell lymphoma growth M Mihailovich, M Bremang, V Spadotto, D Musiani, E Vitale, G Varano, ... Nature communications 6 (1), 8725, 2015 | 121 | 2015 |
| On-line construction of compact directed acyclic word graphs S Inenaga, H Hoshino, A Shinohara, M Takeda, S Arikawa, G Mauri, ... Discrete Applied Mathematics 146 (2), 156-179, 2005 | 121 | 2005 |
| MeCP2 post-translational modifications: a mechanism to control its involvement in synaptic plasticity and homeostasis? E Bellini, G Pavesi, I Barbiero, A Bergo, C Chandola, MS Nawaz, ... Front Cell Neurosci. 8 (236), 110, 2014 | 110 | 2014 |
| PscanChIP: finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments F Zambelli, G Pesole, G Pavesi Nucleic acids research 41 (W1), W535-W543, 2013 | 103 | 2013 |
Graziano PesoleProfessor of Molecular Biology, Università degli Studi di Bari and National Research CouncilVerified email at uniba.it
