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Jaap Heringa
Jaap Heringa
Professor of Bioinformatics, Vrije Universiteit Amsterdam
Verified email at vu.nl
Title
Cited by
Cited by
Year
The FAIR Guiding Principles for scientific data management and stewardship
MD Wilkinson, M Dumontier, IJJ Aalbersberg, G Appleton, M Axton, ...
Scientific data 3 (1), 1-9, 2016
204042016
T-Coffee: A novel method for fast and accurate multiple sequence alignment
C Notredame, DG Higgins, J Heringa
Journal of molecular biology 302 (1), 205-217, 2000
91982000
PRALINE: a multiple sequence alignment toolbox that integrates homology-extended and secondary structure information
VA Simossis, J Heringa
Nucleic acids research 33 (suppl_2), W289-W294, 2005
6072005
An analysis of protein domain linkers: their classification and role in protein folding
RA George, J Heringa
Protein engineering 15 (11), 871-879, 2002
5862002
FAIR principles: interpretations and implementation considerations
A Jacobsen, R de Miranda Azevedo, N Juty, D Batista, S Coles, R Cornet, ...
Data intelligence 2 (1-2), 10-29, 2020
5012020
A simple and fast secondary structure prediction method using hidden neural networks
K Lin, VA Simossis, WR Taylor, J Heringa
Bioinformatics 21 (2), 152-159, 2005
3782005
The KH domain occurs in a diverse set of RNA‐binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid
TJ Gibson, JD Thompson, J Heringa
FEBS letters 324 (3), 361-366, 1993
2701993
General secretion signal for the mycobacterial type VII secretion pathway
MH Daleke, R Ummels, P Bawono, J Heringa, ...
Proceedings of the National Academy of Sciences 109 (28), 11342-11347, 2012
2482012
The FAIR Guiding Principles for scientific data management and stewardship. Sci Data 3, 160018 (2016)
M Wilkinson, M Dumontier, I Aalbersberg, G Appleton, M Axton, A Baak, ...
2352016
Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment
J Heringa
Computers & chemistry 23 (3-4), 341-364, 1999
2081999
Interaction of transmembrane helices by a knobs‐into‐holes packing characteristic of soluble coiled coils
D Langosch, J Heringa
Proteins: Structure, Function, and Bioinformatics 31 (2), 150-159, 1998
1911998
Tracking repeats using significance and transitivty.
R Szklarczyk, J Heringa
Bioinformatics 20 (Suppl 1), i311-i317, 2004
1732004
Protein secondary structure prediction
W Pirovano, J Heringa
Data Mining Techniques for the Life Sciences, 327-348, 2009
1712009
The FAIR Guiding Principles for scientific data management and stewardship, Scientific Data 3 (2016) 160018
MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ...
URL: https://doi. org/10.1038/sdata, 2016
1632016
The ontogeny of a dominance hierarchy in colonies of the BumblebeeBombus terrestris (Hymenoptera, Apidae)
A Van Doorn, J Heringa
Insectes sociaux 33 (1), 3-25, 1986
1471986
PRALINE™: a strategy for improved multiple alignment of transmembrane proteins
W Pirovano, KA Feenstra, J Heringa
Bioinformatics 24 (4), 492-497, 2008
1462008
PhyloPars: estimation of missing parameter values using phylogeny
J Bruggeman, J Heringa, BW Brandt
Nucleic acids research 37 (suppl_2), W179-W184, 2009
1452009
Homology-extended sequence alignment
VA Simossis, J Kleinjung, J Heringa
Nucleic acids research 33 (3), 816-824, 2005
1442005
Side-chain clusters in protein structures and their role in protein folding
J Heringa, P Argos
Journal of molecular biology 220 (1), 151-171, 1991
1321991
Comment: The FAIR Guiding Principles for scientific data management and stewardship, Sci. Data, 3, 1–9
MD Wilkinson, M Dumontier, IJ Aalbersberg, G Appleton, M Axton, A Baak, ...
128*2016
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