| Methods included MR Crusoe, S Abeln, A Iosup, P Amstutz, J Chilton, N Tijanić, H Ménager, ... Communications of the ACM 65 (6), 54-63, 2022 | 243 | 2022 |
| The hydrophobic temperature dependence of amino acids directly calculated from protein structures E van Dijk, A Hoogeveen, S Abeln PLoS computational biology 11 (5), e1004277, 2015 | 188 | 2015 |
| Comparing clustering and pre-processing in taxonomy analysis MJ Bonder, S Abeln, E Zaura, BW Brandt Bioinformatics, 2012 | 113 | 2012 |
| A Simple Lattice Model That Captures Protein Folding, Aggregation and Amyloid Formation Abeln S., Vendruscolo M., Dobson C.M., Frenkel D. PLoS ONE 9 (1), e85185, 2014 | 83 | 2014 |
| Disordered flanks prevent peptide aggregation S Abeln, D Frenkel PLoS computational biology 4 (12), e1000241, 2008 | 82 | 2008 |
| How old is your fold? HF Winstanley, S Abeln, CM Deane Bioinformatics 21 (suppl_1), i449-i458, 2005 | 79 | 2005 |
| The potential use of big data in oncology SM Willems, S Abeln, KA Feenstra, R de Bree, EF van der Poel, ... Oral oncology 98, 8-12, 2019 | 74 | 2019 |
| Multiple Sequence Alignment P Bawono, M Dijkstra, W Pirovano, A Feenstra, S Abeln, J Heringa Bioinformatics: Volume I: Data, Sequence Analysis, and Evolution, 167-189, 2017 | 69 | 2017 |
| Integrating Candida albicans metabolism with biofilm heterogeneity by transcriptome mapping R Rajendran, A May, L Sherry, R Kean, C Williams, BL Jones, KV Burgess, ... Scientific reports 6, 35436, 2016 | 68 | 2016 |
| Aurora kinase A (AURKA) interaction with Wnt and Ras-MAPK signalling pathways in colorectal cancer A Jacobsen, LJW Bosch, SR Martens-de Kemp, B Carvalho, ... Scientific Reports 8 (1), 7522, 2018 | 65 | 2018 |
| Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins A May, R Pool, E van Dijk, J Bijlard, S Abeln, J Heringa, KA Feenstra Bioinformatics 30 (3), 326-334, 2014 | 64 | 2014 |
| The hydrophobic effect characterises the thermodynamic signature of amyloid fibril growth JHM van Gils, E van Dijk, A Peduzzo, A Hofmann, N Vettore, ... PLOS Computational Biology 16 (5), e1007767, 2020 | 60 | 2020 |
| Methods to discover and validate biofluid-based biomarkers in neurodegenerative dementias CE Teunissen, L Kimble, S Bayoumy, K Bolsewig, F Burtscher, ... Molecular & Cellular Proteomics 22 (10), 100629, 2023 | 50 | 2023 |
| Consistent Treatment of Hydrophobicity in Protein Lattice Models Accounts for Cold Denaturation. E van Dijk, P Varilly, T Knowles, D Frenkel, S Abeln Physical review letters 116 (7), 078101, 2016 | 46 | 2016 |
| Fold usage on genomes and protein fold evolution S Abeln, CM Deane Proteins: Structure, Function, and Bioinformatics 60 (4), 690-700, 2005 | 46 | 2005 |
| High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer E van den Broek, MJJ Dijkstra, O Krijgsman, D Sie, JC Haan, JJH Traets, ... PloS one 10 (9), e0138141, 2015 | 45 | 2015 |
| Exploring Fold Space Preferences of New-born and Ancient Protein Superfamilies H Edwards, S Abeln, CM Deane PLOS Computational Biology 9 (11), e1003325, 2013 | 43 | 2013 |
| Interplay between folding and assembly of fibril-forming polypeptides R Ni, S Abeln, M Schor, MAC Stuart, PG Bolhuis Physical Review Letters 111 (5), 058101, 2013 | 42 | 2013 |
| Unraveling the outcome of 16S rDNA-based taxonomy analysis through mock data and simulations A May, S Abeln, W Crielaard, J Heringa, BW Brandt Bioinformatics 30 (11), 1530-1538, 2014 | 38 | 2014 |
| SeRenDIP-CE: sequence-based interface prediction for conformational epitopes Q Hou, B Stringer, K Waury, H Capel, R Haydarlou, F Xue, S Abeln, ... Bioinformatics 37 (20), 3421-3427, 2021 | 32 | 2021 |
Jaap HeringaProfessor of Bioinformatics, Vrije Universiteit AmsterdamVerified email at vu.nl
