| Accurate prediction of protein structures and interactions using a three-track neural network M Baek, F DiMaio, I Anishchenko, J Dauparas, S Ovchinnikov, GR Lee, ... Science 373 (6557), 871-876, 2021 | 5901 | 2021 |
| Protein structure prediction and analysis using the Robetta server DE Kim, D Chivian, D Baker Nucleic acids research 32 (suppl_2), W526-W531, 2004 | 2503 | 2004 |
| Protein structure prediction and structural genomics D Baker, A Sali Science 294 (5540), 93-96, 2001 | 2348 | 2001 |
| Protein structure prediction using Rosetta CA Rohl, CEM Strauss, KMS Misura, D Baker Methods in enzymology 383, 66-93, 2004 | 2337 | 2004 |
| ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules A Leaver-Fay, M Tyka, SM Lewis, OF Lange, J Thompson, R Jacak, ... Methods in enzymology 487, 545-574, 2011 | 2305 | 2011 |
| Design of a novel globular protein fold with atomic-level accuracy B Kuhlman, G Dantas, GC Ireton, G Varani, BL Stoddard, D Baker science 302 (5649), 1364-1368, 2003 | 2261 | 2003 |
| De novo design of protein structure and function with RFdiffusion JL Watson, D Juergens, NR Bennett, BL Trippe, J Yim, HE Eisenach, ... Nature 620 (7976), 1089-1100, 2023 | 2163 | 2023 |
| Robust deep learning–based protein sequence design using ProteinMPNN J Dauparas, I Anishchenko, N Bennett, H Bai, RJ Ragotte, LF Milles, ... Science 378 (6615), 49-56, 2022 | 1983 | 2022 |
| Predicting protein structures with a multiplayer online game S Cooper, F Khatib, A Treuille, J Barbero, J Lee, M Beenen, A Leaver-Fay, ... Nature 466 (7307), 756-760, 2010 | 1976 | 2010 |
| Contact order, transition state placement and the refolding rates of single domain proteins KW Plaxco, KT Simons, D Baker Journal of molecular biology 277 (4), 985-994, 1998 | 1926 | 1998 |
| Quantitative reactivity profiling predicts functional cysteines in proteomes E Weerapana, C Wang, GM Simon, F Richter, S Khare, MBD Dillon, ... Nature 468 (7325), 790-795, 2010 | 1855 | 2010 |
| The Rosetta all-atom energy function for macromolecular modeling and design RF Alford, A Leaver-Fay, JR Jeliazkov, MJ O’Meara, FP DiMaio, H Park, ... Journal of chemical theory and computation 13 (6), 3031-3048, 2017 | 1805 | 2017 |
| Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions KT Simons, C Kooperberg, E Huang, D Baker Journal of molecular biology 268 (1), 209-225, 1997 | 1803 | 1997 |
| The coming of age of de novo protein design PS Huang, SE Boyken, D Baker Nature 537 (7620), 320-327, 2016 | 1741 | 2016 |
| Kemp elimination catalysts by computational enzyme design D Röthlisberger, O Khersonsky, AM Wollacott, L Jiang, J DeChancie, ... Nature 453 (7192), 190-195, 2008 | 1664 | 2008 |
| Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: four approaches that performed well in CASP8 E Krieger, K Joo, J Lee, J Lee, S Raman, J Thompson, M Tyka, D Baker, ... Proteins: Structure, Function, and Bioinformatics 77 (S9), 114-122, 2009 | 1633 | 2009 |
| Improved protein structure prediction using predicted interresidue orientations J Yang, I Anishchenko, H Park, Z Peng, S Ovchinnikov, D Baker Proceedings of the National Academy of Sciences 117 (3), 1496-1503, 2020 | 1609 | 2020 |
| The EAACI/GA2LEN/EDF/WAO Guideline for the definition, classification, diagnosis, and management of urticaria: the 2013 revision and update T Zuberbier, W Aberer, R Asero, C Bindslev‐Jensen, Z Brzoza, ... Allergy 69 (7), 868-887, 2014 | 1580 | 2014 |
| De novo computational design of retro-aldol enzymes L Jiang, EA Althoff, FR Clemente, L Doyle, D Rothlisberger, A Zanghellini, ... science 319 (5868), 1387-1391, 2008 | 1523 | 2008 |
| Protein–protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations JJ Gray, S Moughon, C Wang, O Schueler-Furman, B Kuhlman, CA Rohl, ... Journal of molecular biology 331 (1), 281-299, 2003 | 1435 | 2003 |
Will ShefflerUniversity of WashingtonVerified email at uw.edu
