| QIIME allows analysis of high-throughput community sequencing data JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ... Nature methods 7 (5), 335-336, 2010 | 38179 | 2010 |
| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 22752 | 2019 |
| An obesity-associated gut microbiome with increased capacity for energy harvest PJ Turnbaugh, RE Ley, MA Mahowald, V Magrini, ER Mardis, JI Gordon nature 444 (7122), 1027-1031, 2006 | 15560 | 2006 |
| Diet rapidly and reproducibly alters the human gut microbiome LA David, CF Maurice, RN Carmody, DB Gootenberg, JE Button, ... Nature 505 (7484), 559-563, 2014 | 11981 | 2014 |
| Human gut microbes associated with obesity RE Ley, PJ Turnbaugh, S Klein, JI Gordon nature 444 (7122), 1022-1023, 2006 | 11702 | 2006 |
| Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample JG Caporaso, CL Lauber, WA Walters, D Berg-Lyons, CA Lozupone, ... Proceedings of the national academy of sciences 108 (supplement_1), 4516-4522, 2011 | 10571 | 2011 |
| A core gut microbiome in obese and lean twins PJ Turnbaugh, M Hamady, T Yatsunenko, BL Cantarel, A Duncan, RE Ley, ... nature 457 (7228), 480-484, 2009 | 10041 | 2009 |
| The human microbiome project PJ Turnbaugh, RE Ley, M Hamady, CM Fraser-Liggett, R Knight, ... Nature 449 (7164), 804-810, 2007 | 8196 | 2007 |
| Obesity alters gut microbial ecology RE Ley, F Bäckhed, P Turnbaugh, CA Lozupone, RD Knight, JI Gordon Proceedings of the national academy of sciences 102 (31), 11070-11075, 2005 | 7964 | 2005 |
| Metagenomic analysis of the human distal gut microbiome SR Gill, M Pop, RT DeBoy, PB Eckburg, PJ Turnbaugh, BS Samuel, ... science 312 (5778), 1355-1359, 2006 | 6304 | 2006 |
| Evolution of mammals and their gut microbes RE Ley, M Hamady, C Lozupone, PJ Turnbaugh, RR Ramey, JS Bircher, ... science 320 (5883), 1647-1651, 2008 | 4432 | 2008 |
| Detecting novel associations in large data sets DN Reshef, YA Reshef, HK Finucane, SR Grossman, G McVean, ... science 334 (6062), 1518-1524, 2011 | 3799 | 2011 |
| The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice PJ Turnbaugh, VK Ridaura, JJ Faith, FE Rey, R Knight, JI Gordon Science translational medicine 1 (6), 6ra14-6ra14, 2009 | 3794 | 2009 |
| Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome PJ Turnbaugh, F Bäckhed, L Fulton, JI Gordon Cell host & microbe 3 (4), 213-223, 2008 | 3634 | 2008 |
| Removing noise from pyrosequenced amplicons C Quince, A Lanzen, RJ Davenport, PJ Turnbaugh BMC bioinformatics 12 (1), 38, 2011 | 1826 | 2011 |
| Energy-balance studies reveal associations between gut microbes, caloric load, and nutrient absorption in humans R Jumpertz, DS Le, PJ Turnbaugh, C Trinidad, C Bogardus, JI Gordon, ... The American journal of clinical nutrition 94 (1), 58-65, 2011 | 1614 | 2011 |
| The core gut microbiome, energy balance and obesity PJ Turnbaugh, JI Gordon The Journal of physiology 587 (17), 4153-4158, 2009 | 1285 | 2009 |
| Diet dominates host genotype in shaping the murine gut microbiota RN Carmody, GK Gerber, JM Luevano, DM Gatti, L Somes, KL Svenson, ... Cell host & microbe 17 (1), 72-84, 2015 | 1281 | 2015 |
| Conserved shifts in the gut microbiota due to gastric bypass reduce host weight and adiposity AP Liou, M Paziuk, JM Luevano Jr, S Machineni, PJ Turnbaugh, ... Science translational medicine 5 (178), 178ra41-178ra41, 2013 | 1269 | 2013 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1098 | 2018 |
Ruth E. LeyDepartment of Microbiome Science, Max Planck Institute for Biology, TübingenVerified email at tuebingen.mpg.de
