| Human gut bacterial metabolism drives Th17 activation and colitis M Alexander, QY Ang, RR Nayak, AE Bustion, M Sandy, B Zhang, ... Cell host & microbe 30 (1), 17-30. e9, 2022 | 233 | 2022 |
| Polymorphic Cis- and Trans-Regulation of Human Gene Expression VG Cheung, RR Nayak, IX Wang, S Elwyn, SM Cousins, M Morley, ... PLoS biology 8 (9), e1000480, 2010 | 211 | 2010 |
| Dynamics of the male germline stem cell population during aging of Drosophila melanogaster MR Wallenfang, R Nayak, S DiNardo Aging cell 5 (4), 297-304, 2006 | 174 | 2006 |
| Phage-delivered CRISPR-Cas9 for strain-specific depletion and genomic deletions in the gut microbiome KN Lam, P Spanogiannopoulos, P Soto-Perez, M Alexander, MJ Nalley, ... Cell Reports 37 (5), 2021 | 163 | 2021 |
| Methotrexate impacts conserved pathways in diverse human gut bacteria leading to decreased host immune activation RR Nayak, M Alexander, I Deshpande, K Stapleton-Gray, B Rimal, ... Cell host & microbe 29 (3), 362-377. e11, 2021 | 154 | 2021 |
| Coexpression network based on natural variation in human gene expression reveals gene interactions and functions RR Nayak, M Kearns, RS Spielman, VG Cheung Genome research 19 (11), 1953-1962, 2009 | 152 | 2009 |
| The pretreatment gut microbiome is associated with lack of response to methotrexate in new‐onset rheumatoid arthritis A Artacho, S Isaac, R Nayak, A Flor‐Duro, M Alexander, I Koo, ... Arthritis & rheumatology 73 (6), 931-942, 2021 | 146 | 2021 |
| Gene expression and genetic variation in response to endoplasmic reticulum stress in human cells BA Dombroski, RR Nayak, KG Ewens, W Ankener, VG Cheung, ... The American Journal of Human Genetics 86 (5), 719-729, 2010 | 145 | 2010 |
| Pharmacomicrobiomics in inflammatory arthritis: gut microbiome as modulator of therapeutic response JU Scher, RR Nayak, C Ubeda, PJ Turnbaugh, SB Abramson Nature Reviews Rheumatology 16 (5), 282-292, 2020 | 130 | 2020 |
| Genome-wide profiling identifies associations between lupus nephritis and differential methylation of genes regulating tissue hypoxia and type 1 interferon responses A Mok, O Solomon, RR Nayak, P Coit, HL Quach, J Nititham, AH Sawalha, ... Lupus science & medicine 3 (1), 2016 | 66 | 2016 |
| Mirror, mirror on the wall: which microbiomes will help heal them all? RR Nayak, PJ Turnbaugh BMC medicine 14 (1), 72, 2016 | 46 | 2016 |
| Stress-induced changes in gene interactions in human cells RR Nayak, WE Bernal, JW Lee, MJ Kearns, VG Cheung Nucleic acids research 42 (3), 1757-1771, 2014 | 27 | 2014 |
| A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity M Alexander, V Upadhyay, R Rock, L Ramirez, K Trepka, P Puchalska, ... Cell reports 43 (11), 2024 | 26 | 2024 |
| SIMMER employs similarity algorithms to accurately identify human gut microbiome species and enzymes capable of known chemical transformations AE Bustion, RR Nayak, A Agrawal, PJ Turnbaugh, KS Pollard Elife 12, e82401, 2023 | 21 | 2023 |
| Simvastatin induces human gut bacterial cell surface genes V Escalante, RR Nayak, C Noecker, J Babdor, M Spitzer, ... Molecular Microbiology 122 (3), 372-386, 2024 | 17 | 2024 |
| Perturbation of the human gut microbiome by a non-antibiotic drug contributes to the resolution of autoimmune disease RR Nayak, M Alexander, K Stapleton-Grey, C Ubeda, JU Scher, ... Biorxiv, 600155, 2019 | 17 | 2019 |
| The impact of the human gut microbiome on the treatment of autoimmune disease RR Nayak, DA Orellana Immunological reviews 325 (1), 107-130, 2024 | 15 | 2024 |
| Microbiome research in autoimmune and immune-mediated inflammatory diseases: lessons, advances and unmet needs JU Scher, R Nayak, JC Clemente Annals of the rheumatic diseases, 2025 | 13 | 2025 |
| Western diet and psoriatic-like skin and joint diseases: A potential role for the gut microbiota RR Nayak Journal of Investigative Dermatology 141 (7), 1630-1632, 2021 | 13 | 2021 |
| Methotrexate is an antibacterial drug metabolized by human gut bacteria RR Nayak, K Stapleton-Gray, C O'Loughlin, M Fischbach, PJ Turnbaugh Arthritis & Rheumatology 69, 2017 | 11 | 2017 |
