WO2025228199A1 - Double-stranded oligonucleotide inhibiting urat1 gene expression, conjugate, pharmaceutical composition and use thereof - Google Patents
Double-stranded oligonucleotide inhibiting urat1 gene expression, conjugate, pharmaceutical composition and use thereofInfo
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- WO2025228199A1 WO2025228199A1 PCT/CN2025/090601 CN2025090601W WO2025228199A1 WO 2025228199 A1 WO2025228199 A1 WO 2025228199A1 CN 2025090601 W CN2025090601 W CN 2025090601W WO 2025228199 A1 WO2025228199 A1 WO 2025228199A1
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
- A61K31/713—Double-stranded nucleic acids or oligonucleotides
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P19/00—Drugs for skeletal disorders
- A61P19/06—Antigout agents, e.g. antihyperuricemic or uricosuric agents
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/85—Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
Definitions
- This disclosure belongs to the field of RNAi technology, specifically providing a double-stranded oligonucleotide, conjugate, pharmaceutical composition, and its use for inhibiting URAT1 gene expression.
- Urate transporter 1 is the main transporter protein controlling the reabsorption of urate in the kidneys and a key target in the pathogenesis of hyperuricemia.
- Existing drugs that treat hyperuricemia by inhibiting URAT1 typically reduce blood uric acid levels by decreasing reabsorption, thus treating hyperuricemia and gout.
- these inhibitors usually have strong hepatotoxicity and kidney damage.
- RNAi is one of the more mature treatment methods currently available. Reducing the expression of the gene encoding the URAT1 protein can decrease uric acid reabsorption and promote increased uric acid excretion, thereby lowering blood uric acid levels. However, there are currently no RNAi drugs specifically targeting URAT1 on the market.
- the present disclosure provides a double-stranded oligonucleotide, conjugate, pharmaceutical composition and use thereof for inhibiting URAT1 expression.
- a double-stranded oligonucleotide for inhibiting URAT1 gene expression comprising a sense strand and an antisense strand, the sense strand and the antisense strand being 17-30 nucleotides in length, and the sense strand and the antisense strand being at least partially complementary; wherein, starting from the 5' end, the antisense strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138, 287-296.
- this disclosure provides a conjugate comprising the double-stranded oligonucleotide described in the first aspect of this disclosure and one or more targeting ligand groups conjugated to the double-stranded oligonucleotide.
- a pharmaceutical composition comprising the double-stranded oligonucleotides described in the first aspect of this disclosure and/or the conjugates described in the second aspect of this disclosure.
- the present disclosure provides the use of the double-stranded oligonucleotide described in the first aspect of this disclosure, and/or the conjugate described in the second aspect of this disclosure, and/or the pharmaceutical composition described in the third aspect of this disclosure in the preparation of a medicament for inhibiting URAT1 gene expression.
- the present disclosure provides the use of the double-stranded oligonucleotides described in the first aspect of this disclosure, and/or the conjugates described in the second aspect of this disclosure, and/or the pharmaceutical compositions described in the third aspect of this disclosure in the preparation of a medicament for treating and/or preventing pathological conditions or diseases associated with URAT1 expression.
- this disclosure provides a method for inhibiting URAT1 gene expression, comprising administering to a subject an effective dose of the double-stranded oligonucleotide described in the first aspect of this disclosure, and/or the conjugate described in the second aspect of this disclosure, and/or the pharmaceutical composition described in the third aspect of this disclosure.
- this disclosure provides a method for preventing and/or treating hyperuricemia or gout, comprising administering to a subject an effective amount of the double-stranded oligonucleotide described in the first aspect of this disclosure, and/or the conjugate described in the second aspect of this disclosure, and/or the pharmaceutical composition described in the third aspect of this disclosure.
- the double-stranded oligonucleotides, conjugates, and pharmaceutical compositions disclosed herein can inhibit the expression of the URAT1 gene, reduce the URAT1 protein content, and significantly reduce blood uric acid, which can help treat and/or prevent pathological conditions or diseases related to URAT1 expression, including hyperuricemia or gout.
- the terms “optionally,” “optionally,” or “optionally” generally refer to an event or condition that may, but may not, occur, and the description includes both cases in which the event or condition occurs and cases in which the event or condition does not occur.
- small interfering RNA refers to a double-stranded RNA of 17 to 25 nucleotides in length, comprising a sense strand and an antisense strand.
- siRNA mediates targeted cleavage of RNA transcripts via the RISC pathway by forming an RNA-induced silencing complex (RISC).
- RISC RNA-induced silencing complex
- siRNA directs the specific degradation of mRNA sequences through known RNA interference (RNAi) processes, inhibiting the translation of mRNA into amino acids and its conversion into proteins.
- RNAi RNA interference
- siRNA can regulate (e.g., inhibit) the expression of URAT1 in cells.
- sequence refers to a sequence of nucleobases or nucleotides.
- base is a pyrimidine or purine compound that is a component of a nucleotide and includes purine bases adenine and guanine, and pyrimidine bases cytosine, thymine, and uracil. Nucleobases may be further modified. The synthesis of modified nucleobases (including phosphorous amide compounds of modified nucleobases) is known in the art.
- double-stranded oligonucleotide refers to a double-stranded structure formed by two oligonucleotides through partial or complete base pairing.
- the two oligonucleotides include a sense strand and an antisense strand, which may or may not be of the same length.
- the oligonucleotide having a double-stranded structure is considered a double-stranded oligonucleotide as described in this disclosure.
- the nucleotides constituting the double-stranded oligonucleotide in this disclosure can be modified or unmodified nucleotides.
- the modification does not specifically refer to the modified site.
- the linking bonds between the nucleotides in the double-stranded oligonucleotide in this disclosure may also be modified. Double-stranded oligonucleotides containing modified linking bonds between nucleotides are also considered double-stranded oligonucleotides as described in this invention.
- the double-stranded oligonucleotide in this disclosure may also contain compounds or modifiers acceptable in the art to improve the properties of the double-stranded oligonucleotide, such as linking ligands to form conjugates.
- the term “antisense strand (or guide strand)” includes a region substantially complementary to a target sequence.
- the term “sense strand (or follower strand)” refers to an iRNA strand containing an iRNA strand substantially complementary to the antisense strand.
- the term “substantially complementary” means completely complementary or at least partially complementary, for example, the antisense strand being completely complementary or at least partially complementary to the target sequence.
- mismatches may be present in the internal or terminal regions of the molecule, wherein the most tolerant mismatches are present in the terminal regions, for example, within 5, 4, 3, or 2 nucleotides at the 5'- and/or 3' ends of the iRNA.
- at least partially substantially complementary of the antisense strand to the mRNA means that the antisense strand has a polynucleotide substantially complementary to a continuous portion of the mRNA of interest.
- target sequence refers to a continuous portion of the nucleotide sequence of the mRNA molecule that forms during transcription of the URAT1 gene, including mRNA that is a product of RNA processing as a primary transcription product.
- URAT1 can be intracellular, for example, in the cells of a subject.
- first nucleobase or nucleotide sequence e.g., a positive/antisense strand of an RNAi agent or a targeting mRNA
- second nucleobase or nucleotide sequence refers to the ability of an oligonucleotide or polynucleotide comprising the first nucleotide sequence to hybridize with an oligonucleotide or polynucleotide comprising the second nucleotide sequence (forming base-pair hydrogen bonds under mammalian physiological conditions (or similar in vitro conditions)) and form a double-stranded or double-helical structure under certain standard conditions.
- the term "complete complementarity" means that in a hybridized nucleobase or nucleotide sequence pair, all (100%) bases of the sequential sequence of the first oligonucleotide will hybridize with the same number of bases in the sequential sequence of the second oligonucleotide.
- the sequential sequence may comprise all or part of the first or second nucleotide sequence.
- "Partial complementarity” means that in a hybridized nucleobase or nucleotide sequence pair, a majority, such as at least 70% (but not all), of the bases of the sequential sequence of the first oligonucleotide will hybridize with the same number of bases in the sequential sequence of the second oligonucleotide.
- the sequential sequence may comprise all or part of the first or second nucleotide sequence.
- the term "substantially complementary” means that in the hybridized nucleobase or nucleotide sequence pair, the vast majority, such as at least 85% or up to three nucleotide differences (but not all), of the sequential sequence of the first oligonucleotide will hybridize with the same number of bases in the sequential sequence of the second oligonucleotide.
- the sequential sequence may comprise all or part of the first or second nucleotide sequence.
- the terms “complementary,” “fully complementary,” “partially complementary,” and “substantially complementary” are used to refer to nucleobase or nucleotide matching between the sense and antisense strands of an RNAi agent, or between the antisense strand of an RNAi agent and the sequence of the target mRNA.
- complementarity refers to the ability of an oligonucleotide in the first sequence to hybridize with an oligonucleotide in the second sequence under certain conditions and form a double-stranded structure.
- At least partially complementary means that the two sequences can be completely complementary, or have no more than 5, 4, 3, or 2 mismatched base pairs in total, while retaining the ability to hybridize under the relevant conditions.
- overhangs should not be considered mismatches for determining complementarity.
- mismatch means that in the siRNA double-stranded molecule, the bases at corresponding positions are not paired in a complementary manner.
- nucleotide difference refers to a change in the type of bases of nucleotides at the same or corresponding positions compared to the original nucleotide sequence. For example, if a nucleotide base in the original nucleotide sequence is A, and the nucleotide base at the same or corresponding position is changed to U, C, G, or dT, dC, dG, etc., then a nucleotide sequence difference is considered to exist at that position. It should be noted that if, compared to the original nucleotide sequence, the nucleotides at the same or corresponding positions differ only in the presence or type of modification, then a nucleotide sequence difference is not considered to exist at that position.
- ligand refers to an atom or group of atoms that binds to an oligonucleotide or other oligomer.
- a conjugation group modifies one or more properties of the compound to which it is linked, including but not limited to pharmacodynamic, pharmacokinetic, binding, absorption, cellular distribution, cellular uptake, charge, and/or clearance properties.
- link means that the two molecules are directly or indirectly connected by a covalent bond, or that the two molecules are associated by a non-covalent bond (e.g., a hydrogen bond or an ionic bond).
- link refers to the connection between two compounds or molecules, meaning that the two molecules are linked by a covalent bond or associated via a non-covalent bond (e.g., a hydrogen bond or an ionic bond).
- a non-covalent bond e.g., a hydrogen bond or an ionic bond.
- link and association as used in this disclosure may refer to a link between a first compound and a second compound, with or without any inserted atoms or groups of atoms.
- a linking group is one or more atoms that connect one molecule or a portion of a molecule to another second molecule or a second portion of a molecule.
- a linking group can contain any number of atoms or functional groups. In some embodiments, the linking group is used solely to link two bioactive molecules.
- any symbol used in this disclosure refers to any group or groups that may be attached thereto, which is consistent with the scope of the invention as described in this disclosure.
- a peptide is a compound formed by the linkage of two or more amino acids via amide bonds.
- individual amino acids are linked in a specific sequence to form a chain.
- An amino acid is a compound carrying at least one amino group and at least one carboxyl group. This includes naturally occurring amino acids (amino acids that produce proteins in vivo), non-natural amino acids, or prepared amino acids that can be found in organisms.
- amino acid residues are present in the L-form.
- standard amino acid refers to the following twenty amino acids: alanine, arginine, asparagine, aspartic acid (aspartate), cysteine, glutamine, glutamic acid (glutamate), glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine.
- non-standard amino acid refers to an amino acid other than a “standard amino acid” as defined in this disclosure.
- Non-standard amino acids include, but are not limited to, N-formylmethionine, hydroxyproline, selenomethionine, isovaleine, citrulline (Cit), ornithine, ⁇ -methyl-aspartate ( ⁇ MeD), ⁇ -methyl-leucine ( ⁇ MeL), N-methylalanine, N-methyl-glycine (NMeG), N-methylleucine (NMeL), O-cyclohexyl-alanine (Cha), N-ethylalanine, N,N- ⁇ -dimethyllysine (K(Me) 2 ), methylarginine (Arg(Me)), dimethylarginine (R(Me) 2 ), n-alkylated L- ⁇ amino acids, and other amino acid analogs or amino acid mimics that function in a
- a polyethylene glycol (PEG) unit refers to a repeating unit of the formula ( CH2CH2O ). It should be understood that in the chemical structures disclosed in this disclosure, a PEG unit can be described as ( CH2CH2O ), ( OCH2CH2 ), or ( CH2OCH2 ). It should also be understood that the number representing the number of repeating PEG units can be placed on either side of the brackets representing the PEG unit. It should be further understood that terminal PEG units can be capped by atoms (e.g., hydrogen atoms) or some other part.
- cyclic peptide refers to a polypeptide chain in which two cysteine residues are linked by a disulfide bond to form a cyclic polypeptide chain.
- disulfide bond between the two cysteine residues in the "cyclic peptide” is... express.
- the 2'-OH and 2'-H of the ribose ring in the "2',2'-[halogen, halogen] disubstituted nucleotide" are both substituted with a halogen (e.g., F, Cl, Br or I, preferably F); for example, the structural formula of the 2',2'-[F,F] disubstituted nucleotide is as follows:
- the 2'-OH of the ribose ring in the "2',2'-[halogen, C1-6 alkyl] disubstituted nucleotide" is substituted with a halogen, and the 2'-H of the ribose ring is substituted with a C1-6 alkyl group; for example, the structural formula of the 2',2'-[F, CH3 ] disubstituted nucleotide is as follows: Wherein, Base represents a nucleoside base, which is selected from A, U, G, C or T.
- composition can refer to something used for the treatment of a disease or for use in in vitro cell culture experiments.
- pharmaceutical composition generally refers to a unit dose form and can be prepared by any method well known in the pharmaceutical industry. All methods involve the step of combining the active ingredient with excipients constituting one or more adjunct components. Typically, compositions are prepared by uniformly and adequately combining active siRNA with liquid excipients, finely pulverized solid excipients, or both.
- pharmaceutical acceptable means that a substance or composition must be chemically and/or toxicologically compatible with other components of the formulation and/or the mammals to which it is treated.
- pharmaceutical acceptable as used in this disclosure means approved by a federal regulatory agency or national government, or listed in the United States Pharmacopeia or other generally recognized pharmacopoeia for use in animals, particularly in humans.
- the term "pharmaceutically acceptable carrier or excipient” may include any solvent, solid excipient, diluent, or other liquid excipient, etc., suitable for a specific target dosage form.
- any conventional excipients that are incompatible with the siRNA of this disclosure, such as those that produce any adverse biological effects or interactions with any other component of the pharmaceutically acceptable composition in a harmful manner, is also within the scope of this disclosure.
- the term "subject” refers to any animal being examined, studied, or treated, and is not intended to limit this disclosure to any particular type of subject.
- humans are preferred subjects.
- non-human animals are preferred subjects, including but not limited to mice, monkeys, ferrets, cattle, sheep, goats, pigs, chickens, turkeys, dogs, cats, horses, and reptiles.
- cells are preferred subjects.
- treatment means the eradication or improvement of the underlying disorder being treated.
- a treatment benefit is achieved by eradicating or improving one or more physical symptoms associated with the underlying disorder, thereby observing improvement in the subject, although the subject may still be suffering from the underlying disorder.
- prevention and “avoidance” are used interchangeably to refer to methods for obtaining beneficial or desired results, including but not limited to preventive benefits.
- the conjugate, RNAi reagent, or composition may be given to a subject at risk of developing a specific disease, or to a subject who reports one or more physiological symptoms of a disease, even if a diagnosis of the disease may not have been made.
- the term "administration" generally refers to the introduction of a pharmaceutical preparation of this disclosure into the body of a subject by any route of introduction or delivery. Any method known to those skilled in the art for contacting cells, organs, or tissues with the drug may be employed. Administration may include, but is not limited to, intravenous, intra-arterial, intranasal, intraperitoneal, intramuscular, subcutaneous, or oral administration. A daily dose may be divided into one, two, or more doses in suitable forms to be administered at one, two, or more times during a period of time.
- the term “regulation of gene expression” means that the expression of a gene, or the level of an RNA molecule or equivalent RNA molecule encoding one or more proteins or protein subunits, is upregulated or downregulated such that the expression, level, or activity is greater or less than that observed in the absence of a regulator.
- the term “regulation” may mean “inhibition,” but the use of the word “regulation” is not limited to this definition.
- the term “inhibition” refers to the downregulation of target gene expression due to siRNA-mediated mRNA degradation.
- Downregulation means a decrease in target gene expression level of 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 99% or more compared to the absence of siRNA treatment.
- the term "inhibition of URAT1 gene expression” includes any level of inhibition of the URAT1 gene, such as at least partial inhibition of URAT1 gene expression, including inhibition of at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99%.
- URAT1 gene expression can be evaluated based on the level of any variable associated with URAT1 gene expression, such as the mRNA or protein level of URAT1. Inhibition can be evaluated by a decrease in the absolute or relative level of one or more of these variables compared to a control level.
- the control level can be any type of control level used in the art, such as baseline level before administration, or level measured in similar subjects, cells, or samples that have never been treated or have been treated with a control (e.g., a control with only buffer or a control without active agent).
- any range of siRNAs incompatible with the present disclosure such as any adverse biological effects produced or interactions with any other component of a pharmaceutically acceptable composition in a harmful manner, is also within the scope of this disclosure.
- Double-stranded oligonucleotides Double-stranded oligonucleotides:
- a double-stranded oligonucleotide for inhibiting URAT1 gene expression comprising a sense strand and an antisense strand, the sense strand and the antisense strand being 17-30 nucleotides in length, and the sense strand and the antisense strand being at least partially complementary.
- the antisense strand is 21-23 nucleotides long, and the sense strand is 19-21 nucleotides long.
- the antisense strand is 21 nucleotides long, and the sense strand is 19 nucleotides long.
- the antisense strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138 and 287-296.
- the antisense strand comprises no more than three nucleotides different from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138, 287-296.
- the antisense strand comprises no more than two nucleotides different from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138, 287-296.
- the antisense strand comprises no more than one nucleotide different from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138, 287-296.
- the antisense strand comprises nucleotides 1-19 of the nucleotide sequence shown in any of SEQ ID NO. 70-138, 287-296.
- the antisense strand is selected from any of the nucleotide sequences shown in SEQ ID NO.70-138 and 287-296.
- the positive strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotide sequences shown in any of SEQ ID NO. 1-69, 277-286.
- the positive strand comprises no more than three nucleotides different from the nucleotide sequences shown in any of SEQ ID NO. 1-69, 277-286.
- the positive strand comprises no more than two nucleotides different from the nucleotide sequences shown in any of SEQ ID NO. 1-69, 277-286.
- the positive strand comprises no more than one nucleotide different from the nucleotide sequences shown in any of SEQ ID NO. 1-69, 277-286.
- the positive strand is selected from any of the nucleotide sequences shown in SEQ ID NO. 1-69, 277-286.
- the sense strand and the antisense strand have a mismatch of no more than 3 nucleotides.
- the sense strand and the antisense strand have a mismatch of no more than 2 nucleotides.
- the sense strand and the antisense strand have a mismatch of no more than one nucleotide.
- the justice chain and the antisense chain are completely complementary.
- the double-stranded oligonucleotide comprises the sense strand sequence shown in any one of groups RN591001-RN591079, and the 1st to 19th nucleotide sequences of the antisense strand sequence shown in any one of groups RN591001-RN591079, starting from the 5' end:
- the double-stranded oligonucleotide is selected from any one of the groups RN591070-RN591079.
- the double-stranded oligonucleotide is selected from any one of RN591008, RN591017, RN591023, RN591047, RN591063, RN591066, RN591075, and RN591078.
- the double-stranded oligonucleotide contains at least one modified nucleotide. In other alternative embodiments, each nucleotide in the double-stranded oligonucleotide is selected from modified nucleotides.
- the modified nucleotide includes at least one of the following: 2'-halogenated nucleotides (e.g., 2'-F-modified nucleotides), 2'-deoxy-modified nucleotides, 2'- OC1-6alkyl -modified nucleotides (e.g., 2'-O- CH3- modified nucleotides), 2'-O-( CH2 ) n -O-Me-modified nucleotides (e.g., 2' -O- CH2CH2 -O- CH3- modified nucleotides), 2'-amino-modified nucleotides, nucleotides modified with 2',2'-[halogen, halogen] disubstituted or 2',2'-[halogen, C1-6alkyl ] disubstituted nucleotides, debased nucleotides, or nucleotide-like compounds; n is selected from 2'-halogen
- the modified nucleotide includes at least one of the following: a 2'-F modified nucleotide, a 2'- deoxy modified nucleotide, a 2'-O-CH3 modified nucleotide, a 2' -O- CH2CH2 -O- CH3 modified nucleotide, or a 2',2'-[F, CH3 ] disubstituted nucleotide.
- the modified nucleotide includes at least one of the following: a 2'-F modified nucleotide, a 2'-O- CH3 modified nucleotide, or a 2'-O- CH2CH2 - O - CH3 modified nucleotide.
- the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
- nucleotides at positions 2, 6, 9, 12, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F, and each nucleotide site other than those modified with 2'-F is independently selected from nucleotides modified with 2'-O-CH 3 or nucleotides modified with 2'-O-CH 2 CH 2 -O-CH 3 ; at least three nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and each nucleotide site other than those modified with 2'-F is selected from nucleotides modified with 2'-O-CH 3 .
- the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
- nucleotides at positions 2, 6, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F; either nucleotide at position 9 or 12 is selected from nucleotides modified with 2'-F, and the other nucleotide is selected from nucleotides modified with 2'-O-CH 3 ; the nucleotide at position 15 is selected from nucleotides modified with 2'-O-CH 2 CH 2 -O-CH 3 or nucleotides modified with 2'-O-CH 3 ; and the nucleotides at the remaining positions are nucleotides modified with 2'-O-CH 3 or other modified nucleotides besides those mentioned above.
- nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are selected from nucleotides modified with 2'-O-CH 3 or other modified nucleotides besides those mentioned above.
- the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
- nucleotides at positions 2, 6, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F; either nucleotide at position 9 or 12 is selected from nucleotides modified with 2'-F, and the other nucleotide is selected from nucleotides modified with 2'-O-CH 3 ; the nucleotide at position 15 is selected from nucleotides modified with 2'-O-CH 2 CH 2 -O-CH 3 or nucleotides modified with 2'-O-CH 3 ; and the nucleotides at the remaining positions are nucleotides modified with 2'-O-CH 3.
- the nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are selected from nucleotides modified with 2'-O-CH 3 .
- the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
- nucleotides at positions 2, 6, 9, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F
- nucleotide at position 15 is selected from nucleotides modified with 2' -O- CH2CH2 -O- CH3 or nucleotides modified with 2'-O- CH3
- nucleotides at the remaining positions are nucleotides modified with 2'-O- CH3 or other modified nucleotides besides the above modifications
- nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F
- nucleotides at the remaining positions are nucleotides modified with 2' -O-CH3 or other modified nucleotides besides the above modifications.
- the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
- nucleotides at positions 2, 6, 9, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F
- nucleotide at position 15 is selected from nucleotides modified with 2' -O- CH2CH2 -O- CH3
- nucleotides at the remaining positions are nucleotides modified with 2'-O- CH3
- nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F
- nucleotides at the remaining positions are selected from nucleotides modified with 2'-O- CH3 .
- the double-stranded oligonucleotide contains at least one modified internucleotide bond selected from phosphate thioester internucleotide bonds, and the phosphate thioester internucleotide bond is present at at least one of the following positions 1)-5):
- each nucleotide in the double-stranded oligonucleotide is a modified nucleotide.
- At least four nucleotides at positions 2, 6, 9, 12, 14, and 16 of the antisense strand, in the direction from the 5' end to the 3' end, are selected from nucleotides modified with 2'-F, and the other nucleotide sites are each independently selected from nucleotides modified with 2'-O- CH3 or nucleotides modified with 2' -O- CH2CH2 -O- CH3 ; at least three nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the other nucleotide sites are selected from nucleotides modified with 2'-O- CH3 .
- the nucleotides at positions 2, 6, 14, and 16 of the antisense strand are selected from 2'-F modified nucleotides; one of the nucleotides at positions 9 and 12 is selected from a 2'-F modified nucleotide, and the other nucleotide is selected from a 2'-O-CH 3 modified nucleotide; the nucleotide at position 15 is selected from a 2'-O-CH 2 CH 2 -O-CH 3 modified nucleotide or a 2'-O-CH 3 modified nucleotide; and the nucleotides at the remaining positions are 2'-O-CH 3 modified nucleotides.
- the nucleotides at positions 7-10 of the sense strand are selected from 2'-F modified nucleotides, and the nucleotides at the remaining positions are selected from 2'-O-CH 3 modified nucleotides.
- the nucleotides at positions 2, 6, 14, and 16 of the antisense strand are selected from 2'-F modified nucleotides, one of the nucleotides at positions 9 and 12 is selected from a 2'-F modified nucleotide, the other nucleotide is selected from a 2'-O- CH3 modified nucleotide, and the remaining nucleotides are 2'-O- CH3 modified nucleotides; the nucleotides at positions 7-10 of the sense strand are selected from 2'-F modified nucleotides, and the remaining nucleotides are selected from 2'-O- CH3 modified nucleotides.
- the nucleotides at positions 2, 6, 9, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are nucleotides modified with 2'-O-CH 3 , in the direction from the 5' end to the 3'end; the nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are selected from nucleotides modified with 2'-O-CH 3 .
- the nucleotides at positions 2, 6, 12, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F, and the remaining nucleotides are nucleotides modified with 2'-O- CH3 ; the nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the remaining nucleotides are selected from nucleotides modified with 2'-O- CH3 .
- the double-stranded oligonucleotide further comprises at least one modified nucleotide internucleotide bond (e.g., 1, 2, 3, 4, 5, 6, 7, or 8, etc.), wherein the modified nucleotide internucleotide bond includes at least one of a thiophosphate nucleotide internucleotide bond or a dithiophosphate nucleotide internucleotide bond, and at least one of the modified nucleotide internucleotide bonds is independently selected between the first and second nucleotides of the positive strand starting at the 5' end, and between the second and third nucleotides of the positive strand starting at the 5' end.
- modified nucleotide internucleotide bond e.g., 1, 2, 3, 4, 5, 6, 7, or 8, etc.
- nucleotides between the first and second nucleotides of the sense strand starting at the 3' end, between the first and second nucleotides of the antisense strand starting at the 5' end, between the second and third nucleotides of the antisense strand starting at the 5' end, between the tenth and eleventh nucleotides of the antisense strand starting at the 5' end, between the first and second nucleotides of the antisense strand starting at the 3' end, or between the second and third nucleotides of the antisense strand starting at the 3' end.
- the modified nucleoside inter-bond is selected from phosphate thioside inter-bonds.
- the double-stranded oligonucleotide has at least six modified nucleoside internucleotides (e.g., phosphate thioside internucleotides), wherein the six modified nucleoside internucleotides are selected from any six positions of the following: between the first and second nucleotides of the sense strand starting from the 5' end; between the second and third nucleotides of the sense strand starting from the 5' end; between the first and second nucleotides of the sense strand starting from the 3' end; between the first and second nucleotides of the antisense strand starting from the 5' end; between the second and third nucleotides of the antisense strand starting from the 5' end; between the tenth and eleventh nucleotides of the antisense strand starting from the 5' end; between the first and second nucleotides of the antisense strand starting from the 3' end; or between the second and third nucleotides
- the double-stranded oligonucleotide contains at least six modified nucleoside internucleotides (e.g., phosphate thioside internucleotides), wherein the six sulfur-modified nucleoside internucleotides are respectively located between the first and second nucleotides of the sense strand starting from the 5' end, between the second and third nucleotides of the sense strand starting from the 5' end, between the first and second nucleotides of the antisense strand starting from the 5' end, between the second and third nucleotides of the antisense strand starting from the 5' end, between the first and second nucleotides of the antisense strand starting from the 3' end, and between the second and third nucleotides of the antisense strand starting from the 3' end.
- modified nucleoside internucleotides e.g., phosphate thioside internucleotides
- the internucleotide bond between the 10th and 11th nucleotides of the antisense strand, starting at the 5' end is selected from modified internucleotide bonds (e.g., phosphate thioester internucleotide bonds), and the internucleotide bond between the nucleotide in the sense strand that is base-complementarily paired with the 10th nucleotide of the antisense strand and the nucleotide that is base-complementarily paired with the 11th nucleotide of the antisense strand is selected from phosphate ester internucleotide bonds.
- modified internucleotide bonds e.g., phosphate thioester internucleotide bonds
- the double-stranded oligonucleotide contains a dithiophosphate nucleoside bond, which is located between the first and second nucleotides of the sense strand starting from the 5' end, or between the second and third nucleotides of the sense strand starting from the 5' end, or between the first and second nucleotides of the sense strand starting from the 3' end, or between the first and second nucleotides of the antisense strand starting from the 5' end, or between the second and third nucleotides of the antisense strand starting from the 5' end, or between the tenth and eleventh nucleotides of the antisense strand starting from the 5' end, or between the first and second nucleotides of the antisense strand starting from the 3' end, or between the second and third nucleotides of the antisense strand starting from the 3' end.
- a dithiophosphate nucleoside bond which is located between the first and second nucleotides
- the first nucleotide of the antisense strand starting from the 5' end, is selected from... Or a nucleotide modified with a 5'-phosphate analog; said nucleotide is selected from any nucleotide with the following structure:
- Base represents a nucleoside base, which is selected from A, U, G, C or T; R represents -H, -OH, -CH3 , -OCH3 , -F.
- the 5'-phosphate analog-modified nucleotide is selected from nucleotides modified with 5'-(E)-vinylphosphonate (5'-(E)-VP).
- the first nucleotide of the antisense strand, starting from the 5' end is selected from...
- the first nucleotide of the antisense strand, starting from the 5' end may be selected from a nucleotide modified with 5'-(E)-VP.
- the first nucleotide of the antisense strand, starting from the 5' end may be selected from...
- the first nucleotide of the antisense strand, starting from the 5' end is selected from a nucleotide modified with 5'-(E)-VP.
- the antisense strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotide sequences 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 208-276, 307-316.
- the antisense strand comprises no more than three nucleotides different from the nucleotides at positions 1-19 of the nucleotide sequences shown in any of SEQ ID NO. 208-276, 307-316.
- the antisense strand contains no more than two nucleotides differing from the nucleotide sequences shown in any of SEQ ID NO. 208-276, 307-316 at positions 1-19.
- the antisense strand contains no more than one nucleotide from positions 1 to 19 that differ from the nucleotide sequences shown in any of SEQ ID NO. 208-276, 307-316.
- the antisense strand comprises nucleotides 1-19 of the nucleotide sequence shown in any of SEQ ID NO. 208-276 and 307-316;
- the antisense strand is selected from any of the nucleotide sequences shown in SEQ ID NO. 208-276 and 307-316.
- the positive strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotide sequences shown in any of SEQ ID NO. 139-207, 297-306.
- the positive strand comprises no more than three nucleotides different from the nucleotide sequences shown in any of SEQ ID NO. 139-207, 297-306.
- the positive strand contains no more than two nucleotides different from the nucleotide sequences shown in any of SEQ ID NO. 139-207, 297-306.
- the positive strand comprises no more than one nucleotide different from the nucleotide sequences shown in any of SEQ ID NO. 139-207, 297-306.
- the positive strand is selected from any of the nucleotide sequences shown in SEQ ID NO. 139-207 and 297-306.
- the double-stranded oligonucleotide is selected from the sense strand sequence shown in any one of groups RX591070-RX591079, and the 1st to 19th nucleotide sequences of the antisense strand sequence shown in any one of groups RX591070-RX591079, starting from the 5' end:
- the double-stranded oligonucleotide is selected from any one of RX591001-RX591079.
- the double-stranded oligonucleotide is selected from any one of RX591008, RX591017, RX591023, RX591047, RX591063, RX591066, RX591075, and RX591078.
- this disclosure provides a conjugate comprising the double-stranded oligonucleotide described in the first aspect of this disclosure and one or more targeting ligand groups conjugated to the double-stranded oligonucleotide.
- the targeting ligand group targets the renal megalin receptor or the renal natriuretic peptide receptor.
- the targeting ligand group is selected from polypeptide fragments containing at least four amino acids.
- the targeting ligand group comprises any of the polypeptide fragments shown in 1)-6) below:
- the targeting ligand group is selected from polypeptides comprising any of the amino acid sequence segments shown in a)-g).
- the targeting ligand group is linked to the double-stranded oligonucleotide via a linker
- the structural unit of the targeting ligand group-connector in the conjugate is selected from any of the structures shown in 1)-7) below:
- La-CYFQNCPRG-Laa preferably cyclic peptide form.
- Lb or Laa is a linker, and the other is a terminal blocking group
- the connector is a linker group containing at least one of the following groups: triazole group, PEG unit, or acyl group.
- La is a linker, Laa is a terminal blocking group, and La is selected from linking groups including -PEG2- CH2CH2CO- or -triazolyl - PEG2- ; Laa is selected from amino or alkyl-substituted amino groups, such as -NHCH3 .
- Lb is a linker and Laa is a terminal closing group.
- Lb is selected from a linker group containing a 6-10 membered aromatic ring or a heteroaromatic ring;
- Laa is selected from an amino or alkyl-substituted amino group, such as -NHCH3 .
- the targeting ligand group is connected via a linker to the ends of the sense and/or antisense strands of the double-stranded oligonucleotide (e.g., the 3' end of the sense strand, and/or the 5' end of the sense strand, and/or the 3' end of the sense strand).
- the structure of the targeting ligand group-connector in the conjugate is selected from any of the structures shown in a)-j), or a pharmaceutically acceptable salt thereof:
- La is a linker, which is independently selected from any bond, -NH-, amide group or linking group containing at least one PEG unit; Lc is a terminal blocking group.
- La is a linking group containing at least two PEG units.
- La is selected from amide groups, or n is 1-3 (e.g., 1, 2, 3), m is 0 or 1, and Z is -CO- (carbonyl) or -NH-.
- * represents a site covalently linked to a double-stranded oligonucleotide, and * represents a site covalently linked to a polypeptide fragment.
- Lc is a blocking group at the C-terminus of the polypeptide fragment.
- the Lc is selected from amino or alkyl-substituted amino groups (e.g., -NHCH3 ).
- a pharmaceutical composition comprising the double-stranded oligonucleotide described in the first aspect of this disclosure and/or the conjugate described in the second aspect of this disclosure.
- the pharmaceutical composition may further include one or more pharmaceutically acceptable carriers or excipients.
- the present disclosure provides the use of the double-stranded oligonucleotides described in the first aspect of this disclosure, and/or the conjugates described in the second aspect of this disclosure, and/or the pharmaceutical compositions described in the third aspect of this disclosure in the preparation of a medicament for inhibiting URAT1 gene expression.
- this disclosure provides the use of the double-stranded oligonucleotides described in the first aspect of this disclosure, and/or the conjugates described in the second aspect of this disclosure, and/or the pharmaceutical compositions described in the third aspect of this disclosure, in a medicament for treating and/or preventing pathological conditions or diseases associated with URAT1 expression.
- the pathological condition or disease is hyperuricemia or gout.
- this disclosure provides a method for inhibiting URAT1 gene expression, comprising administering to a subject an effective dose of the double-stranded oligonucleotide of the first aspect of this disclosure, and/or the conjugate of the second aspect of this disclosure, and/or the pharmaceutical composition of the third aspect of this disclosure.
- the subject is a human being.
- the subject is a cell, such as Vero cells or HuH1 cells.
- this disclosure provides a method for preventing and/or treating hyperuricemia or gout, comprising administering to a subject an effective dose of the double-stranded oligonucleotide of the first aspect of this disclosure, and/or the conjugate of the second aspect of this disclosure, and/or the pharmaceutical composition of the third aspect of this disclosure.
- the subject is a human being.
- the effective amount of the double-stranded oligonucleotides, double-stranded oligonucleotide conjugates, or pharmaceutical compositions described in this disclosure may vary depending on the administration method and the severity of the disease to be treated. Specifically, the effective amount can be determined by those skilled in the art based on various factors (e.g., through clinical trials). These factors include, but are not limited to: pharmacokinetic parameters of the active ingredient, such as bioavailability, metabolism, and half-life; the severity of the disease to be treated, the patient's weight, the patient's immune status, and the route of administration.
- the medication may be administered to the subject via any suitable route known in the art, including but not limited to: oral or parenteral routes, including intravenous administration, intramuscular administration, subcutaneous administration, transdermal administration, airway administration (aerosol), pulmonary administration, nasal administration, rectal administration, and local administration (including oral and sublingual administration), such as intravenous administration.
- oral or parenteral routes including intravenous administration, intramuscular administration, subcutaneous administration, transdermal administration, airway administration (aerosol), pulmonary administration, nasal administration, rectal administration, and local administration (including oral and sublingual administration), such as intravenous administration.
- the double-stranded oligonucleotides, double-stranded oligonucleotide conjugates, and pharmaceutical compositions disclosed herein can effectively inhibit URAT1 gene expression, which can help treat and/or prevent pathological conditions or diseases related to URAT1 expression.
- the disclosed siRNA sequences target all transcripts and predicted transcripts of the URAT1 gene (NM_144585.4, NM_153378.3, NM_001276326.2, NM_001276327.2, XM_006718430.5, XM_006718431.5, XM_054367604.1, XM_054367605.1).
- the URAT1 gene sequence information is obtained from the NCBI gene database (https://www.ncbi.nlm.nih.gov/gene/).
- the phosphoramidol solid-phase synthesis method for nucleic acids involves starting a cycle using the aforementioned compound (e.g., CPG carrier, PS carrier) linked to a solid-phase support, and then linking nucleoside monomers one by one in the direction from the 3' end to the 5' end of the nucleotide sequence.
- aforementioned compound e.g., CPG carrier, PS carrier
- connection of a nucleoside monomer involves four steps: deprotection, coupling, capping, and oxidation or sulfidation.
- the synthetic conditions are given below:
- the nucleoside monomer was prepared into an acetonitrile solution with a concentration of 0.1 M.
- the deprotection reaction conditions were the same for each step.
- the deprotection reaction conditions were: temperature 25°C, reaction time 70 seconds, and the deprotection reagent was a 3% (v/v) dichloroacetic acid solution in dichloromethane.
- the molar ratio of dichloroacetic acid to the 4,4'-dimethoxytriphenylmethyl protecting group on the solid support was 5:1.
- the conditions for each coupling reaction were identical.
- the coupling reaction conditions were as follows: temperature 25°C, molar ratio of nucleic acid sequence to nucleoside monomer on the solid-phase support 1:10, molar ratio of nucleic acid sequence to coupling reagent on the solid-phase support 1:65, reaction time 600 seconds, coupling reagent 0.5M acetonitrile solution of 5-ethylthio-1H-tetrazole, and thioreagent 0.2mol/L acetonitrile/pyridine mixed solution of hydrogenated xanthanin (acetonitrile and pyridine volume ratio 1:1).
- Cap1 was a 20% (v/v) N-methylimidazole pyridine/acetonitrile mixture, with a volume ratio of pyridine to acetonitrile of 3:5.
- Cap2 was a 20% (v/v) acetic anhydride acetonitrile solution.
- the molar ratio of N-methylimidazole in Cap1 and acetic anhydride in Cap2 to the nucleic acid sequence linked on the solid-phase support was 1:1:1.
- the conditions for each oxidation reaction were identical.
- the oxidation reaction conditions were: temperature 25°C; reaction time 3 seconds; oxidizing agent concentration of 0.05M iodine solution, with a molar ratio of iodine to the nucleic acid sequence linked on the solid support in the coupling reaction of 30:1; the oxidation reaction was carried out in a water/pyridine mixed solvent (water to pyridine volume ratio 1:9).
- the sulfidation reaction conditions were: temperature 25°C; reaction time 360 seconds; thioreagent concentration of 0.2M hydroflavin in pyridine solution, with a molar ratio of thioreagent to the nucleic acid sequence linked on the solid support in the coupling reaction of 4:1; the thioreagent reaction was carried out in a water/pyridine mixed solvent (water to pyridine volume ratio 1:9).
- nucleic acid sequence ligated on the solid-phase support was sequentially cut, deprotected, purified, and desalted, and then freeze-dried to obtain the positive strand, wherein:
- the cleavage and deprotection conditions were as follows: The synthesized nucleotide sequence linked to a solid-phase support was added to 25 wt% ammonia solution at a concentration of 0.5 mL/ ⁇ mol. The reaction was carried out at 55 °C for 16 hours. The solvent was removed, and the solution was concentrated to dryness under vacuum. After ammonia treatment, the product was dissolved in 0.4 mL/ ⁇ mol N-methylpyrrolidone relative to the amount of single-stranded nucleic acid. Subsequently, 0.3 mL/ ⁇ mol triethylamine and 0.6 mL/ ⁇ mol triethylamine trifluoride were added to deprotect the 2'-O-TBDMS protection on the ribose.
- Detection Purity was determined using ion exchange chromatography (IEX-HPLC); molecular weight was determined using liquid chromatography-mass spectrometry (LC-MS). The measured molecular weight was compared with the theoretical value. If the measured value and the theoretical value were consistent, it indicated that the target sense and antisense strands were obtained.
- IEX-HPLC ion exchange chromatography
- LC-MS liquid chromatography-mass spectrometry
- step (1-1) The sense and antisense strands synthesized in step (1-1) were mixed in an equimolar ratio, dissolved in water for injection, and heated to 95°C. The mixture was then slowly cooled to room temperature and kept at room temperature for 10 minutes to allow the sense and antisense strands to form a double-stranded structure through hydrogen bonds, thereby obtaining the siRNA shown in Tables 4a and 4b.
- uppercase letters A, U, G, C, and T represent the base composition of nucleotides
- lowercase letter m indicates that the nucleotide represented by the uppercase letter to the left of m is modified with 2'-O-CH 3
- lowercase letter f indicates that the nucleotide represented by the uppercase letter to the left of f is modified with 2'-F
- (moe) indicates that the nucleotide represented by the uppercase letter to the left of (moe) is modified with 2'-O-CH 2 CH 2 -O-CH 3
- lowercase letter s indicates that the nucleoside bond between the two nucleotides to the left and right of s is a phosphate thioester nucleoside bond.
- Base represents a nucleoside base, which is selected from A, U, G, C, or T.
- Q represents -OH, -O- , -SH, or -S- .
- siRNA sequences (modifications) used in this disclosure were synthesized by Suzhou Xuanjing Biotechnology Co., Ltd.
- the ⁇ Ct method is used to calculate the relative quantitative levels and inhibition rates of target gene mRNA in each test group.
- ⁇ Ct (mean of the blank control group) is the arithmetic mean of the ⁇ Ct values of several culture wells in the blank control group. Therefore, each sample in both the test group and the blank control group corresponds to a ⁇ Ct value.
- the relative expression level of the target gene mRNA in the test group 2 - ⁇ Ct(test group) ⁇ 100%
- the relative expression level of the target gene mRNA in the test group was normalized, and the relative expression level of the target gene mRNA in the blank control group was defined as 100%.
- the inhibition rate of target gene mRNA expression in the test group 100% - the relative expression level of target gene mRNA in the test group
- Example 1 Evaluation of the inhibitory activity of siRNA sequences on the target gene urate transporter 1 (URAT1) in Vero cells :
- an in vitro cell transfection method was used to evaluate the inhibitory activity of siRNA sequences on the target gene URAT1 in Vero cells.
- Vero cells giftsed by Beijing Institute of Technology
- complete medium DMEM medium containing 10% fetal bovine serum and 1% penicillin-dextrose antibiotics
- the cells were digested with trypsin and resuspended.
- the resuspended cells were then adjusted to a density of 0.6 ⁇ 105 cells /well in complete medium and seeded into 24-well plates. After 24 hours of culture, transfection was performed.
- siRNA transfection mixture Prepare a 20 ⁇ M stock solution of siRNA with PBS. Then, add 1.5 ⁇ L of the siRNA stock solution to each well and dilute it with 48.5 ⁇ L of Opti-MEM medium to prepare 50 ⁇ L of siRNA working solution. Add 3 ⁇ L of the stock solution to each well.
- the RNAiMAX transfection reagent was diluted in 47 ⁇ l of Opti-MEM medium and incubated at room temperature for 5 minutes to prepare a 50 ⁇ l working solution for transfection. Then, 50 ⁇ l of siRNA working solution was mixed with the 50 ⁇ l working solution of the transfection reagent to prepare the siRNA transfection mixture. For the MOCK group, 50 ⁇ l of Opti-MEM medium was mixed with 50 ⁇ l of the working solution of the transfection reagent.
- siRNA transfection mixture On the day of transfection, replace 500 ⁇ l of Opti-MEM medium per well in each 24-well plate, and add 100 ⁇ l of the corresponding siRNA transfection mixture or MOCK group transfection mixture to each well. The final concentration of siRNA is 50 nM per well.
- the tube was then centrifuged at 12000 rpm for 10 min at 4 °C, and the supernatant was discarded. 1 mL of 75% ethanol was added, and the centrifuge tube was inverted to wash the precipitate. The tube was then centrifuged at 12000 rpm for 5 min at 4 °C, the supernatant was discarded, and the cells were air-dried at room temperature to obtain total RNA.
- RNA Take 1 ⁇ g of total RNA, and use a reverse transcription kit (Promega, Reverse Transcription System, A3500) with Oligo(dT)15 reverse transcription primers. Prepare a 20 ⁇ L reverse transcription system according to the instructions and complete the reverse transcription reaction. After the reaction, add 80 ⁇ L of RNase-free water to the reverse transcription system to obtain a cDNA solution. Then, use a real-time quantitative PCR kit (ABI, SYBR TM Select Master Mix, Catalog number: 4472908) to detect the expression level of the target gene mRNA in Vero cells. In this real-time quantitative PCR method, primers targeting the target gene and primers targeting the internal reference gene were used to detect the target gene and the internal reference gene, respectively.
- a reverse transcription kit Promega, Reverse Transcription System, A3500
- Oligo(dT)15 Oligo(dT)15 reverse transcription primers.
- Each reaction system contains 5 ⁇ L of cDNA solution obtained from the above reverse transcription reaction, 10 ⁇ L of SYBR TM Select Master Mix, 0.5 ⁇ L of 10 ⁇ M upstream primer, 0.5 ⁇ L of 10 ⁇ M downstream primer, and 4 ⁇ L of RNase-Free H2O. Place the prepared reaction system on a Real-time PCR instrument (ABI, StepOnePlus TM ) and perform Real-time PCR amplification using a three-step method.
- a Real-time PCR instrument (ABI, StepOnePlus TM ) and perform Real-time PCR amplification using a three-step method.
- the amplification program is as follows: 95°C pre-denaturation for 10 min, then 95°C denaturation for 30 s, 60°C annealing for 30 s, and 72°C extension for 30 s. Repeat the denaturation, annealing, and extension process for 40 cycles.
- Example 1 show that all designed sequences can effectively reduce the expression of URAT1 mRNA, among which RX591008, RX591011, RX591013, RX591014, RX591017, RX591018, RX591019, RX591022 and RX591024 sequences have relatively better gene repression levels (Table 6).
- Table 6 shows the inhibitory activity of Vero cells on the target genes after administration of the siRNA conjugate described in this embodiment.
- Example 2 Evaluation of the inhibitory activity of siRNA sequence on the target gene URAT1 in HuH1 cells:
- an in vitro cell transfection method was used to evaluate the inhibitory activity of siRNA sequences on the target gene URAT1 in HuH1 cells.
- HuH1 cells (Wuhan Pronosai Biotechnology Co., Ltd.) were cultured in complete medium (DMEM medium containing 10% fetal bovine serum and 1% penicillin-dextrose antibiotics) at 5% CO2 and 37°C. Once the cell density reached 80%, the cells were digested with trypsin and resuspended. The resuspended cells were then adjusted to a density of 0.6 ⁇ 105 cells/well in complete medium and seeded into 24-well plates. After 24 hours of culture, transfection was performed.
- complete medium DMEM medium containing 10% fetal bovine serum and 1% penicillin-dextrose antibiotics
- siRNA transfection mixture Prepare stock solutions of siRNA with PBS buffer at concentrations of 20 ⁇ M, 0.4 ⁇ M, and 0.2 ⁇ M, respectively. Then, take 1.5 ⁇ l of the siRNA stock solution from each well and dilute it with 48.5 ⁇ l of Opti-MEM medium to prepare 50 ⁇ l of siRNA working solution; add 3 ⁇ l of the stock solution to each well.
- the RNAiMAX transfection reagent was diluted in 47 ⁇ l of Opti-MEM medium and incubated at room temperature for 5 minutes to prepare a 50 ⁇ l working solution for transfection. Then, 50 ⁇ l of siRNA working solution was mixed with the 50 ⁇ l working solution of the transfection reagent to prepare the siRNA transfection mixture. For the MOCK group, 50 ⁇ l of Opti-MEM medium was mixed with 50 ⁇ l of the working solution of the transfection reagent.
- siRNA transfection mixture On the day of transfection, replace 500 ⁇ l of Opti-MEM medium per well in each 24-well plate, and add 100 ⁇ l of the corresponding siRNA transfection mixture or MOCK group transfection mixture to each well.
- the final siRNA concentrations are 50 nM/well, 1 nM/well, and 0.5 nM/well, respectively.
- the tube was then centrifuged at 12000 rpm for 10 min at 4 °C, and the supernatant was discarded. 1 mL of 75% ethanol was added, and the centrifuge tube was inverted to wash the precipitate. The tube was then centrifuged at 12000 rpm for 5 min at 4 °C, the supernatant was discarded, and the cells were air-dried at room temperature to obtain total RNA.
- each reaction well contains 20 ⁇ L of real-time PCR reaction system, and each reaction system contains 5 ⁇ L of cDNA solution obtained from the above reverse transcription reaction, 10 ⁇ L of TaqMan Fast Advanced Master Mix, 0.4 ⁇ L of 10 ⁇ M upstream primer, 0.4 ⁇ L of 10 ⁇ M downstream primer, 0.2 ⁇ L of 10 ⁇ M probe, and 3 ⁇ L of RNase-free H2O .
- the prepared reaction system was placed on a real-time quantitative PCR instrument (ABI, StepOnePlus TM /7500) and amplified using a two-step method.
- the amplification program was 50°C pre-denaturation for 2 min, 95°C pre-denaturation for 20 s, then 95°C denaturation for 3 s, and 60°C annealing for 30 s. The denaturation and annealing process was repeated for 40 cycles.
- Example 2 shows that all designed sequences can effectively reduce the expression of URAT1 mRNA, among which the sequences RX591008, RX591017, RX591023, RX591047, RX591063, RX591066, RX591075, and RX591078 have relatively better gene repression levels.
- Table 8 shows the inhibitory activity of the target gene URAT1 in HuH1 cells at a final siRNA sequence transfection concentration of 50 nM/well in Example 2:
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Abstract
Description
相关申请的交叉引用Cross-references to related applications
本公开要求于2024年4月30日提交中国国家知识产权局的申请号为202410537237.7、发明名称为“抑制URAT1表达的表达的寡核苷酸缀合物及其用途”的中国专利申请的优先权,以及要求于2025年4月8日提交中国国家知识产权局的申请号为202510436069.7、发明名称为“抑制URAT1表达的双链寡核苷酸、缀合物、药物组合物及其用途”的中国专利申请的优先权,其全部内容通过引用结合在本公开中。This disclosure claims priority to Chinese Patent Application No. 202410537237.7, filed on April 30, 2024, entitled "Oligonucleotide conjugate for inhibiting URAT1 expression and its use thereof", and to Chinese Patent Application No. 202510436069.7, filed on April 8, 2025, entitled "Double-stranded oligonucleotide, conjugate, pharmaceutical composition for inhibiting URAT1 expression and its use thereof", the entire contents of which are incorporated herein by reference.
本公开属于RNAi技术领域,具体提供一种抑制URAT1基因表达的双链寡核苷酸、缀合物、药物组合物及其用途。This disclosure belongs to the field of RNAi technology, specifically providing a double-stranded oligonucleotide, conjugate, pharmaceutical composition, and its use for inhibiting URAT1 gene expression.
尿酸盐转运蛋白1(Urate Transporter1,URAT1)是控制肾脏尿酸盐重吸收过程的主要转运蛋白,也是高尿酸血症发病的一个关键靶点。现有的通过抑制URAT1从而治疗高尿酸血症的药物,通常是通过降低重吸收的方式,减少血液尿酸水平以治疗高尿酸血症与痛风。但是,这类抑制剂通常具有较强的肝毒性和肾脏损伤。Urate transporter 1 (URAT1) is the main transporter protein controlling the reabsorption of urate in the kidneys and a key target in the pathogenesis of hyperuricemia. Existing drugs that treat hyperuricemia by inhibiting URAT1 typically reduce blood uric acid levels by decreasing reabsorption, thus treating hyperuricemia and gout. However, these inhibitors usually have strong hepatotoxicity and kidney damage.
RNAi是目前比较成熟的治疗手段之一。降低编码URAT1蛋白的基因表达,可以减少尿酸重吸收,促进尿酸排出增加,从而使血尿酸降低。但是,目前尚未有针对URAT1的RNAi药物上市。RNAi is one of the more mature treatment methods currently available. Reducing the expression of the gene encoding the URAT1 protein can decrease uric acid reabsorption and promote increased uric acid excretion, thereby lowering blood uric acid levels. However, there are currently no RNAi drugs specifically targeting URAT1 on the market.
鉴于此,本公开提供一种抑制URAT1表达的双链寡核苷酸、缀合物、药物组合物及其用途。In view of this, the present disclosure provides a double-stranded oligonucleotide, conjugate, pharmaceutical composition and use thereof for inhibiting URAT1 expression.
在本公开的第一方面,本公开提供一种用于抑制URAT1基因表达的双链寡核苷酸,所述双链寡核苷酸包括正义链和反义链,所述正义链和所述反义链的长度分别为17-30个核苷酸,且正义链与反义链至少部分地互补;其中,以5’末端起始计,所述反义链包含与SEQ ID NO.70-138、287-296任一所示核苷酸序列的第1-19位核苷酸中差异不多于3个核苷酸的至少17个连续核苷酸。In a first aspect of this disclosure, a double-stranded oligonucleotide for inhibiting URAT1 gene expression is provided, the double-stranded oligonucleotide comprising a sense strand and an antisense strand, the sense strand and the antisense strand being 17-30 nucleotides in length, and the sense strand and the antisense strand being at least partially complementary; wherein, starting from the 5' end, the antisense strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138, 287-296.
在本公开的第二方面,本公开提供一种缀合物,所述缀合物包含本公开第一方面所述的双链寡核苷酸以及缀合连接到双链寡核苷酸上的一个或多个靶向配体基团。In a second aspect of this disclosure, this disclosure provides a conjugate comprising the double-stranded oligonucleotide described in the first aspect of this disclosure and one or more targeting ligand groups conjugated to the double-stranded oligonucleotide.
在本公开的第三方面,本公开提供一种药物组合物,所述组合物包含本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的缀合物。In a third aspect of this disclosure, a pharmaceutical composition is provided comprising the double-stranded oligonucleotides described in the first aspect of this disclosure and/or the conjugates described in the second aspect of this disclosure.
在本公开的第四方面,本公开提供一种本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的缀合物、和/或本公开第三方面所述的药物组合物在制备抑制URAT1基因表达的药物中的用途。In a fourth aspect of this disclosure, the present disclosure provides the use of the double-stranded oligonucleotide described in the first aspect of this disclosure, and/or the conjugate described in the second aspect of this disclosure, and/or the pharmaceutical composition described in the third aspect of this disclosure in the preparation of a medicament for inhibiting URAT1 gene expression.
在本公开的第五方面,本公开提供一种本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的缀合物、和/或本公开第三方面所述的药物组合物在制备用于治疗和/或预防与URAT1表达相关的病理状况或疾病的药物中的用途。In a fifth aspect of this disclosure, the present disclosure provides the use of the double-stranded oligonucleotides described in the first aspect of this disclosure, and/or the conjugates described in the second aspect of this disclosure, and/or the pharmaceutical compositions described in the third aspect of this disclosure in the preparation of a medicament for treating and/or preventing pathological conditions or diseases associated with URAT1 expression.
在本公开的第六方面,本公开提供一种抑制URAT1基因表达的方法,其包括向受试者施用有效剂量的本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的缀合物和/或本公开第三方面所述的药物组合物。In a sixth aspect of this disclosure, this disclosure provides a method for inhibiting URAT1 gene expression, comprising administering to a subject an effective dose of the double-stranded oligonucleotide described in the first aspect of this disclosure, and/or the conjugate described in the second aspect of this disclosure, and/or the pharmaceutical composition described in the third aspect of this disclosure.
在本公开的第七方面,本公开提供一种预防和/或治疗高尿酸血症或痛风的方法其包括向受试者施用有效量的本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的缀合物、和/或本公开第三方面所述的药物组合物。In a seventh aspect of this disclosure, this disclosure provides a method for preventing and/or treating hyperuricemia or gout, comprising administering to a subject an effective amount of the double-stranded oligonucleotide described in the first aspect of this disclosure, and/or the conjugate described in the second aspect of this disclosure, and/or the pharmaceutical composition described in the third aspect of this disclosure.
本公开提供的双链寡核苷酸、缀合物及药物组合物能够抑制URAT1基因的表达,降低URAT1蛋白含量,并明显降低血尿酸,有助于治疗和/或预防与URAT1表达相关的病理状况或疾病,包括高尿酸血症或痛风。The double-stranded oligonucleotides, conjugates, and pharmaceutical compositions disclosed herein can inhibit the expression of the URAT1 gene, reduce the URAT1 protein content, and significantly reduce blood uric acid, which can help treat and/or prevent pathological conditions or diseases related to URAT1 expression, including hyperuricemia or gout.
下面将对本发明实施例中的技术方案进行清楚、完整地描述,本领域技术人员可以借鉴本文内容,适当改进工艺参数实现。The technical solutions in the embodiments of the present invention will be clearly and completely described below. Those skilled in the art can refer to the content of this article and appropriately improve the process parameters to achieve the desired results.
一般定义和术语:General definitions and terminology:
除非另有定义,如本公开所用的所有技术和科学术语具有与本领域普通技术人员通常理解的相同的含义。尽管与本文所述的那些类似或等同的方法和材料可以用于本发明的实践或测试,在下文描述合适的方法和材料。本文涉及的出版物、专利申请、专利和其它参考文献均通过引用以其整体并入本文。在冲突的情况下,以本说明书(包括定义)为准。此外,材料、方法和实施例仅是说明性的而非旨在限制。Unless otherwise defined, all technical and scientific terms used in this disclosure have the same meaning as commonly understood by one of ordinary skill in the art. While similar or equivalent methods and materials to those described herein may be used in the practice or testing of this invention, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated herein by reference in their entirety. In case of conflict, this specification (including definitions) shall prevail. Furthermore, materials, methods, and examples are illustrative only and not intended to be limiting.
在本公开中,术语“包含”或“包括”为开放式表达,在本公开中用于表示短语“包括但不限于”,并且与之可互换使用,指即包括本公开所指明的内容,但并不排除其他方面的内容。In this disclosure, the terms “comprising” or “including” are open-ended expressions used to refer to the phrase “including but not limited to” and are used interchangeably with it, meaning that they include the contents specified in this disclosure but do not exclude other contents.
在本公开中,术语“任选地”、“任选的”或“任选”通常是指随后所述的事件或状况可以但未必发生,并且该描述包括其中发生该事件或状况的情况,以及其中未发生该事件或状况的情况。In this disclosure, the terms “optionally,” “optionally,” or “optionally” generally refer to an event or condition that may, but may not, occur, and the description includes both cases in which the event or condition occurs and cases in which the event or condition does not occur.
在本公开中,术语“小干扰RNA(Small interfering RNA,siRNA)”是一个长17到25个核苷酸的双链RNA,包含正义链和反义链。siRNA通过形成沉默复合体(RNA-induced silencing complex,RISC),介导RISC途径的RNA转录物靶向切割。具体地,siRNA通过已知的RNA干扰(RNAi)过程指导mRNA序列的特异性降解,抑制mRNA翻译成氨基酸和转化为蛋白质。例如,siRNA可调节(例如抑制)URAT1在细胞中的表达。In this disclosure, the term "small interfering RNA (siRNA)" refers to a double-stranded RNA of 17 to 25 nucleotides in length, comprising a sense strand and an antisense strand. siRNA mediates targeted cleavage of RNA transcripts via the RISC pathway by forming an RNA-induced silencing complex (RISC). Specifically, siRNA directs the specific degradation of mRNA sequences through known RNA interference (RNAi) processes, inhibiting the translation of mRNA into amino acids and its conversion into proteins. For example, siRNA can regulate (e.g., inhibit) the expression of URAT1 in cells.
在本公开中,术语“序列”和“核苷酸序列”是指一系列核碱基或核苷酸。如本公开所用,“碱基”、“核苷酸碱基”或“核碱基”是嘧啶或嘌呤化合物,其是核苷酸的组分,并且包括嘌呤碱基腺嘌呤和鸟嘌呤,以及嘧啶碱基胞嘧啶、胸腺嘧啶和尿嘧啶。核碱基可以进一步被修饰。修饰的核碱基(包括修饰的核碱基的亚磷酰胺化合物)的合成是本领域已知的。In this disclosure, the terms "sequence" and "nucleotide sequence" refer to a sequence of nucleobases or nucleotides. As used herein, "base," "nucleotide base," or "nucleobase" is a pyrimidine or purine compound that is a component of a nucleotide and includes purine bases adenine and guanine, and pyrimidine bases cytosine, thymine, and uracil. Nucleobases may be further modified. The synthesis of modified nucleobases (including phosphorous amide compounds of modified nucleobases) is known in the art.
在本公开中,术语“双链寡核苷酸”指的是两条寡核苷酸通过其中部分或全部碱基互补配对形成的双链结构,两条寡核苷酸包括正义链和反义链,正义链和反义链的长度可以相同也可以不相同,只要至少存在部分碱基互补配对区域以形成双链体区域,具有双链结构的寡核苷酸即属于本公开所述的双链寡核苷酸。本公开中构成双链寡核苷酸中的核苷酸可以为经修饰或未经修饰的核苷酸,当指经修饰的核苷酸时,除非另有说明,本公开所述的修饰不特指修饰的位点。本公开中双链寡核苷酸除去核苷酸经修饰,连接核苷酸之间的连接键也可经修饰,含有经修饰的核苷酸之间的连接键的双链寡核苷酸也属于本发明所述的双链寡核苷酸。本公开中双链寡核苷酸除去核苷酸部分,还可以含有本领域可接受的化合物分子或修饰物,以改善双链寡核苷酸的性质,例如连接配体形成缀合物。In this disclosure, the term "double-stranded oligonucleotide" refers to a double-stranded structure formed by two oligonucleotides through partial or complete base pairing. The two oligonucleotides include a sense strand and an antisense strand, which may or may not be of the same length. As long as at least some base-pairing regions exist to form a double-stranded region, the oligonucleotide having a double-stranded structure is considered a double-stranded oligonucleotide as described in this disclosure. The nucleotides constituting the double-stranded oligonucleotide in this disclosure can be modified or unmodified nucleotides. When referring to modified nucleotides, unless otherwise specified, the modification does not specifically refer to the modified site. In addition to the modification of the nucleotides, the linking bonds between the nucleotides in the double-stranded oligonucleotide in this disclosure may also be modified. Double-stranded oligonucleotides containing modified linking bonds between nucleotides are also considered double-stranded oligonucleotides as described in this invention. Besides the nucleotide portion, the double-stranded oligonucleotide in this disclosure may also contain compounds or modifiers acceptable in the art to improve the properties of the double-stranded oligonucleotide, such as linking ligands to form conjugates.
在本公开中,术语“反义链(或称引导链)”包括与一个靶序列基本上互补的区域。术语“正义链(或称随从链)”是指含有与在反义链基本上互补的iRNA链。术语“基本上互补”是指完全互补或至少部分互补,例如该反义链与靶序列完全互补或至少部分互补。部分互补的情况下,错配可以存在于分子的内部或末端区域内,其中,最耐受的错配存在于末端区域内,例如在iRNA的5’-和/或3'末端的5、4、3或2个核苷酸内部。需要说明的是,反义链与mRNA的“至少部分基本上互补”是指反义链具有与感兴趣的mRNA的一个连续部分基本互补的多核苷酸。In this disclosure, the term "antisense strand (or guide strand)" includes a region substantially complementary to a target sequence. The term "sense strand (or follower strand)" refers to an iRNA strand containing an iRNA strand substantially complementary to the antisense strand. The term "substantially complementary" means completely complementary or at least partially complementary, for example, the antisense strand being completely complementary or at least partially complementary to the target sequence. In the case of partial complementarity, mismatches may be present in the internal or terminal regions of the molecule, wherein the most tolerant mismatches are present in the terminal regions, for example, within 5, 4, 3, or 2 nucleotides at the 5'- and/or 3' ends of the iRNA. It should be noted that "at least partially substantially complementary" of the antisense strand to the mRNA means that the antisense strand has a polynucleotide substantially complementary to a continuous portion of the mRNA of interest.
在本文中,术语“靶序列”是指在编码URAT1基因的转录期间形成的mRNA分子的核苷酸序列的连续部分,包括为初级转录产物的RNA加工产物的mRNA。URAT1可以在细胞内,例如,受试者体内的细胞。In this paper, the term "target sequence" refers to a continuous portion of the nucleotide sequence of the mRNA molecule that forms during transcription of the URAT1 gene, including mRNA that is a product of RNA processing as a primary transcription product. URAT1 can be intracellular, for example, in the cells of a subject.
在本公开中,术语“互补”当用于描述第一核碱基或核苷酸序列(例如,RNAi剂正/反义链或靶向mRNA)相对于第二核碱基或核苷酸序列时,是指包括第一核苷酸序列的寡核苷酸或多核苷酸与包括第二核苷酸序列的寡核苷酸或多核苷酸杂交(在哺乳动物生理条件(或体外类似条件)下形成碱基对氢键)并在某些标准条件下形成双链体或双螺旋结构的能力。In this disclosure, the term “complementary” when used to describe a first nucleobase or nucleotide sequence (e.g., a positive/antisense strand of an RNAi agent or a targeting mRNA) relative to a second nucleobase or nucleotide sequence refers to the ability of an oligonucleotide or polynucleotide comprising the first nucleotide sequence to hybridize with an oligonucleotide or polynucleotide comprising the second nucleotide sequence (forming base-pair hydrogen bonds under mammalian physiological conditions (or similar in vitro conditions)) and form a double-stranded or double-helical structure under certain standard conditions.
在本公开中,术语“完全互补”是指在杂交的核碱基或核苷酸序列分子对中,第一寡核苷酸的连续序列中的所有(100%)碱基将与第二寡核苷酸的连续序列中的相同数目的碱基杂交。连续序列可以包含第一或第二核苷酸序列的全部或部分。“部分互补”是指在杂交的核碱基或核苷酸序列分子对中,第一寡核苷酸的连续序列中的大部分例如至少70%(但不是全部)的碱基将与第二寡核苷酸的连续序列中的相同数目的碱基杂交。连续序列可以包含第一或第二核苷酸序列的全部或部分。In this disclosure, the term "complete complementarity" means that in a hybridized nucleobase or nucleotide sequence pair, all (100%) bases of the sequential sequence of the first oligonucleotide will hybridize with the same number of bases in the sequential sequence of the second oligonucleotide. The sequential sequence may comprise all or part of the first or second nucleotide sequence. "Partial complementarity" means that in a hybridized nucleobase or nucleotide sequence pair, a majority, such as at least 70% (but not all), of the bases of the sequential sequence of the first oligonucleotide will hybridize with the same number of bases in the sequential sequence of the second oligonucleotide. The sequential sequence may comprise all or part of the first or second nucleotide sequence.
在本公开中,术语“基本上互补”是指在杂交的核碱基或核苷酸序列分子对中,第一寡核苷酸的连续序列中的绝大部分例如至少85%或3个以内的核苷酸差异(但不是全部)的碱基将与第二寡核苷酸的连续序列中的相同数目的碱基杂交。连续序列可以包含第一或第二核苷酸序列的全部或部分。In this disclosure, the term "substantially complementary" means that in the hybridized nucleobase or nucleotide sequence pair, the vast majority, such as at least 85% or up to three nucleotide differences (but not all), of the sequential sequence of the first oligonucleotide will hybridize with the same number of bases in the sequential sequence of the second oligonucleotide. The sequential sequence may comprise all or part of the first or second nucleotide sequence.
在本公开中,术语“互补”、“完全互补”、“部分互补”和“基本上互补”是关于RNAi剂的正义链和反义链之间,或RNAi剂的反义链和靶mRNA的序列之间的核碱基或核苷酸匹配而使用的。In this disclosure, the terms “complementary,” “fully complementary,” “partially complementary,” and “substantially complementary” are used to refer to nucleobase or nucleotide matching between the sense and antisense strands of an RNAi agent, or between the antisense strand of an RNAi agent and the sequence of the target mRNA.
如无特别说明,术语“互补”是指第一序列的寡核苷酸在一定条件下和第二序列的寡核苷酸杂交并形成双链结构的能力。“至少部分互补”是指两条序列可以是完全互补的,或者总体上不多于5个、4个、3个或2个错配碱基配对,同时保留了在相关条件下杂交的能力。另外在两个寡核苷酸设计成杂交时形成一个或多个单链突出端的情况下,就确定互补性而言,这类突出端不应当视作错配。对应地,在本发明中,如无特别说明,“错配”是指在siRNA双链体分子中,对应位置的碱基并未以互补的形式配对存在。Unless otherwise specified, the term "complementarity" refers to the ability of an oligonucleotide in the first sequence to hybridize with an oligonucleotide in the second sequence under certain conditions and form a double-stranded structure. "At least partially complementary" means that the two sequences can be completely complementary, or have no more than 5, 4, 3, or 2 mismatched base pairs in total, while retaining the ability to hybridize under the relevant conditions. Furthermore, in cases where two oligonucleotides are designed to form one or more single-stranded overhangs upon hybridization, such overhangs should not be considered mismatches for determining complementarity. Correspondingly, in this invention, unless otherwise specified, "mismatch" means that in the siRNA double-stranded molecule, the bases at corresponding positions are not paired in a complementary manner.
在本公开中,术语“核苷酸差异”和术语“核苷酸碱基差异”和术语“核苷酸序列的差异”可以互换使用。是指相比于原核苷酸序列,在相同或相对应位置处的核苷酸的碱基种类发生了改变。例如,在原核苷酸序列中的一个核苷酸碱基为A时,在相同或相对应位置处的核苷酸碱基改变为U、C、G或dT、dC、dG等的情况下,认为该位置处存在核苷酸序列的差异。此处需要说明的是,在相比于原核苷酸序列,在相同或相对应位置处的核苷酸仅在是否存在修饰或修饰类型方面存在区别的情况下,不认为该位置处存在核苷酸序列的差异。In this disclosure, the terms "nucleotide difference," "nucleotide base difference," and "nucleotide sequence difference" are used interchangeably. A nucleotide difference refers to a change in the type of bases of nucleotides at the same or corresponding positions compared to the original nucleotide sequence. For example, if a nucleotide base in the original nucleotide sequence is A, and the nucleotide base at the same or corresponding position is changed to U, C, G, or dT, dC, dG, etc., then a nucleotide sequence difference is considered to exist at that position. It should be noted that if, compared to the original nucleotide sequence, the nucleotides at the same or corresponding positions differ only in the presence or type of modification, then a nucleotide sequence difference is not considered to exist at that position.
在本公开中,术语“配体”或“缀合基团”是指与寡核苷酸或其他寡聚体结合的原子或原子团。一般而言,缀合基团修饰与其所连接的化合物的一种或更多种特性,包括但不限于药效学、药代动力学、结合、吸收、细胞分布、细胞摄取、电荷和/或清除特性。当涉及两个分子之间的连接时,本文中使用的术语“连接”指两个分子通过共价键直接或间接连接,或者两个分子通过非共价键(例如,氢键或离子键)缔合。In this disclosure, the terms "ligand" or "conjugation group" refer to an atom or group of atoms that binds to an oligonucleotide or other oligomer. Generally, a conjugation group modifies one or more properties of the compound to which it is linked, including but not limited to pharmacodynamic, pharmacokinetic, binding, absorption, cellular distribution, cellular uptake, charge, and/or clearance properties. When referring to a link between two molecules, the term "link" as used herein means that the two molecules are directly or indirectly connected by a covalent bond, or that the two molecules are associated by a non-covalent bond (e.g., a hydrogen bond or an ionic bond).
在本公开中,术语“连接”或“缀合”在涉及两个化合物或分子之间的连接时是指两个分子通过共价键连接或经由非共价键(例如,氢键或离子键)缔合。除非另有说明,如本公开所用的术语“连接”和“缀合”可以指第一化合物和第二化合物之间的连接,其中具有或不具有任何插入的原子或原子团。In this disclosure, the terms “link” or “association” refer to the connection between two compounds or molecules, meaning that the two molecules are linked by a covalent bond or associated via a non-covalent bond (e.g., a hydrogen bond or an ionic bond). Unless otherwise stated, the terms “link” and “association” as used in this disclosure may refer to a link between a first compound and a second compound, with or without any inserted atoms or groups of atoms.
在本公开中,连接基团是将一个分子或分子的一部分与另一个第二分子或分子的第二部分连接的一个或多个原子。连接基团可以包含任何数目的原子或官能团。在一些实施方案中,连接基团仅用于连接两个生物活性分子。In this disclosure, a linking group is one or more atoms that connect one molecule or a portion of a molecule to another second molecule or a second portion of a molecule. A linking group can contain any number of atoms or functional groups. In some embodiments, the linking group is used solely to link two bioactive molecules.
除非另有说明,如本公开所用的符号是指任何基团或多个基团可以与其连接,这与本公开所述的本发明的范围一致。Unless otherwise stated, any symbol used in this disclosure refers to any group or groups that may be attached thereto, which is consistent with the scope of the invention as described in this disclosure.
根据本领域普通知识,肽为这样的化合物,其由两个或多个氨基酸通过酰胺键的连结而产生。在此,单个的氨基酸以一定的顺序(序列)连结成一条链。氨基酸是携带至少一个氨基基团和至少一个羧基基团的化合物。包括天然的(体内生成蛋白质的氨基酸)、非天然的氨基酸或可在生物中存在的制备氨基酸。According to common knowledge in the art, a peptide is a compound formed by the linkage of two or more amino acids via amide bonds. Here, individual amino acids are linked in a specific sequence to form a chain. An amino acid is a compound carrying at least one amino group and at least one carboxyl group. This includes naturally occurring amino acids (amino acids that produce proteins in vivo), non-natural amino acids, or prepared amino acids that can be found in organisms.
在本公开中,除非另有说明,氨基酸残基以L-型存在。In this disclosure, unless otherwise stated, amino acid residues are present in the L-form.
如本公开所用,术语“标准氨基酸”是指以下二十种氨基酸:丙氨酸、精氨酸、天冬酰胺、天冬氨酸(天冬氨酸盐)、半胱氨酸、谷氨酰胺、谷氨酸(谷氨酸盐)、甘氨酸、组氨酸、异亮氨酸、亮氨酸、赖氨酸、甲硫氨酸、苯丙氨酸、脯氨酸、丝氨酸、苏氨酸、色氨酸、酪氨酸和缬氨酸。As used in this disclosure, the term "standard amino acid" refers to the following twenty amino acids: alanine, arginine, asparagine, aspartic acid (aspartate), cysteine, glutamine, glutamic acid (glutamate), glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine.
如本公开所用,术语“非标准氨基酸”是指除如本公开定义的“标准氨基酸”以外的氨基酸。“非标准氨基酸”包括但不限于N甲酰基甲硫氨酸、羟基脯氨酸、硒代甲硫氨酸、异缬氨酸、瓜氨酸(Cit)、鸟氨酸、α-甲基-天冬氨酸盐(αMeD)、α-甲基-亮氨酸(αMeL)、N-甲基丙氨酸、N-甲基-甘氨酸(NMe G)、N-甲基亮氨酸(NMe L)、O-环己基-丙氨酸(Cha)、N-乙基丙氨酸、N,N-ε-二甲基赖氨酸(K(Me)2)、甲基精氨酸(Arg(Me))、二甲基精氨酸(R(Me)2)、n-烷基化的L-α氨基酸和以与天然存在的氨基酸类似的方式起作用的其它氨基酸类似物或氨基酸模仿物。As used in this disclosure, the term "non-standard amino acid" refers to an amino acid other than a "standard amino acid" as defined in this disclosure. "Non-standard amino acids" include, but are not limited to, N-formylmethionine, hydroxyproline, selenomethionine, isovaleine, citrulline (Cit), ornithine, α-methyl-aspartate (αMeD), α-methyl-leucine (αMeL), N-methylalanine, N-methyl-glycine (NMeG), N-methylleucine (NMeL), O-cyclohexyl-alanine (Cha), N-ethylalanine, N,N-ε-dimethyllysine (K(Me) 2 ), methylarginine (Arg(Me)), dimethylarginine (R(Me) 2 ), n-alkylated L-α amino acids, and other amino acid analogs or amino acid mimics that function in a manner similar to naturally occurring amino acids.
如本公开所用并且如本领域技术人员所理解的,聚乙二醇(PEG)单元是指式(CH2CH2O)的重复单元。应当理解,在本公开公开的化学结构中,PEG单元可以描述为(CH2CH2O)、(OCH2CH2)或(CH2OCH2)。还应理解,表示重复PEG单元数目的数字可以放置在表示PEG单元的括号的任一侧。应进一步理解,末端PEG单元可以被原子(例如氢原子)或一些其它部分封端。As used in this disclosure and as understood by those skilled in the art, a polyethylene glycol (PEG) unit refers to a repeating unit of the formula ( CH₂CH₂O ). It should be understood that in the chemical structures disclosed in this disclosure, a PEG unit can be described as ( CH₂CH₂O ), ( OCH₂CH₂ ), or ( CH₂OCH₂ ). It should also be understood that the number representing the number of repeating PEG units can be placed on either side of the brackets representing the PEG unit. It should be further understood that terminal PEG units can be capped by atoms (e.g., hydrogen atoms) or some other part.
在本公开中,术语“环肽”表示多肽链中的两个半胱氨酸通过二硫键连接形成环状多肽链。在本公开中,所述“环肽”中两个半胱氨酸之间的二硫键用表示。In this disclosure, the term "cyclic peptide" refers to a polypeptide chain in which two cysteine residues are linked by a disulfide bond to form a cyclic polypeptide chain. In this disclosure, the disulfide bond between the two cysteine residues in the "cyclic peptide" is... express.
在本公开中,“2',2'-[卤素,卤素]双取代修饰的核苷酸”中核糖环的2'-OH和2'-H均被卤素(例如F、Cl、Br或I,优选为F)取代;例如2',2'-[F,F]双取代修饰的核苷酸的结构式为 In this disclosure, the 2'-OH and 2'-H of the ribose ring in the "2',2'-[halogen, halogen] disubstituted nucleotide" are both substituted with a halogen (e.g., F, Cl, Br or I, preferably F); for example, the structural formula of the 2',2'-[F,F] disubstituted nucleotide is as follows:
在本公开中,“2',2'-[卤素,C1-6烷基]双取代基修饰的核苷酸”中核糖环的2'-OH被卤素取代、核糖环的2'-H被C1-6烷基取代;例如2',2'-[F,CH3]双取代修饰的核苷酸的结构式为其中,Base代表核苷碱基,所述核苷碱基选自A、U、G、C或T。In this disclosure, the 2'-OH of the ribose ring in the "2',2'-[halogen, C1-6 alkyl] disubstituted nucleotide" is substituted with a halogen, and the 2'-H of the ribose ring is substituted with a C1-6 alkyl group; for example, the structural formula of the 2',2'-[F, CH3 ] disubstituted nucleotide is as follows: Wherein, Base represents a nucleoside base, which is selected from A, U, G, C or T.
在本公开中,“硫代磷酸酯核苷间键”的结构式为“二硫代磷酸酯核苷间键”的结构式为 In this disclosure, the structural formula of the "thiophosphate nucleoside inter-bond" is as follows: The structural formula of the "dithiophosphate nucleoside inter-bond" is:
在本公开中,术语“药物组合物”或“组合物”可指用于疾病的治疗,也可用于细胞的体外培养实验。用于疾病的治疗时,术语“药物组合物”通常是指单位剂量形式,并且可以通过制药领域中熟知的方法的任何一种进行制备。所有的方法包括使活性成分与构成一种或多种附属成分的辅料相结合的步骤。通常,通过均匀并充分地使活性siRNA与液体辅料、细碎固体辅料或这两者相结合,制备组合物。In this disclosure, the term "pharmaceutical composition" or "composition" can refer to something used for the treatment of a disease or for use in in vitro cell culture experiments. When used for the treatment of a disease, the term "pharmaceutical composition" generally refers to a unit dose form and can be prepared by any method well known in the pharmaceutical industry. All methods involve the step of combining the active ingredient with excipients constituting one or more adjunct components. Typically, compositions are prepared by uniformly and adequately combining active siRNA with liquid excipients, finely pulverized solid excipients, or both.
在本公开中,术语“药学上可接受的”是指物质或组合物必须与包含制剂的其它成分和/或用其治疗的哺乳动物化学上和/或毒理学上相容。优选地,本公开所述的“药学上可接受的”是指联邦监管机构或国家政府批准的或美国药典或其他一般认可药典上列举的在动物中、特别是人体中使用的。In this disclosure, the term "pharmaceutical acceptable" means that a substance or composition must be chemically and/or toxicologically compatible with other components of the formulation and/or the mammals to which it is treated. Preferably, "pharmaceutical acceptable" as used in this disclosure means approved by a federal regulatory agency or national government, or listed in the United States Pharmacopeia or other generally recognized pharmacopoeia for use in animals, particularly in humans.
在本公开中,术语“药学上可接受的载体或辅料”均可包括任何溶剂、固体赋形剂、稀释剂或其他液体赋形剂等等,适合于特有的目标剂型。除了任何常规的辅料与本公开的siRNA不兼容的范围,例如所产生的任何不良的生物效应或与药学上可接受的组合物的任何其他组分以有害的方式产生的相互作用,它们的用途也是本公开所考虑的范围。In this disclosure, the term "pharmaceutically acceptable carrier or excipient" may include any solvent, solid excipient, diluent, or other liquid excipient, etc., suitable for a specific target dosage form. The use of any conventional excipients that are incompatible with the siRNA of this disclosure, such as those that produce any adverse biological effects or interactions with any other component of the pharmaceutically acceptable composition in a harmful manner, is also within the scope of this disclosure.
在本文中,术语“受试者”是指任何被检查、研究或治疗的动物,并非意在本公开受任何特定类型的受试者的限制。在一些实施方案中,人是优选的受试者。而在其他实施方案中,非人动物是优选的受试者,包括但不限于小鼠、猴、雪貂、牛、绵羊、山羊、猪、鸡、火鸡、狗、猫、马和爬行动物。在另一些实施方案中,细胞是优选的受试者。In this document, the term "subject" refers to any animal being examined, studied, or treated, and is not intended to limit this disclosure to any particular type of subject. In some embodiments, humans are preferred subjects. In other embodiments, non-human animals are preferred subjects, including but not limited to mice, monkeys, ferrets, cattle, sheep, goats, pigs, chickens, turkeys, dogs, cats, horses, and reptiles. In still other embodiments, cells are preferred subjects.
本公开中,术语“治疗”、“减轻”或“改善”可在此处互换使用。这些术语指的是获得有益的或期望的结果的方法,包括但不限于治疗益处。“治疗益处”意味着根除或改善被治疗的潜在障碍。此处,治疗益处通过根除或改善与潜在障碍相关的一个或多个生理症状,从而在受试者中观察到改善而获得,尽管受试者可能仍然受到潜在障碍的折磨。In this disclosure, the terms “treatment,” “relief,” or “improvement” are used interchangeably. These terms refer to methods of achieving beneficial or desired outcomes, including, but not limited to, treatment benefits. A “treatment benefit” means the eradication or improvement of the underlying disorder being treated. Here, a treatment benefit is achieved by eradicating or improving one or more physical symptoms associated with the underlying disorder, thereby observing improvement in the subject, although the subject may still be suffering from the underlying disorder.
本公开中,术语“预防”和“防止”可互换使用,即指获得有益的或期望的结果的方法,包括但不限于预防性益处。为了获得“预防性益处”,可将缀合物、RNAi试剂或组合物给予有罹患特定疾病风险的受试者,或给予报告疾病的一种或多种生理症状的受试者,即使可能该疾病的诊断尚未作出。In this disclosure, the terms “prevention” and “avoidance” are used interchangeably to refer to methods for obtaining beneficial or desired results, including but not limited to preventive benefits. To obtain a “preventive benefit,” the conjugate, RNAi reagent, or composition may be given to a subject at risk of developing a specific disease, or to a subject who reports one or more physiological symptoms of a disease, even if a diagnosis of the disease may not have been made.
在本公开中,术语“施用”通常是指通过任意引入或递送途径将本公开药物制剂引入受试者的身体中。可以采用本领域技术人员已知的用于使细胞、器官或组织与所述药物接触的任何方法。所述施用可以包括而不限于静脉内、动脉内、鼻内、腹内、肌内、皮下或口服。每日剂量可以划分成一个、两个或更多个合适形式的剂量以在某个时间段期间的一个、两个或更多个时间施用。In this disclosure, the term "administration" generally refers to the introduction of a pharmaceutical preparation of this disclosure into the body of a subject by any route of introduction or delivery. Any method known to those skilled in the art for contacting cells, organs, or tissues with the drug may be employed. Administration may include, but is not limited to, intravenous, intra-arterial, intranasal, intraperitoneal, intramuscular, subcutaneous, or oral administration. A daily dose may be divided into one, two, or more doses in suitable forms to be administered at one, two, or more times during a period of time.
如本公开中,术语“调节基因表达”意指基因的表达、或编码一种或多种蛋白质或蛋白质亚单元的RNA分子或等效RNA分子的水平被上调或下调,以使得表达、水平或活性大于或小于在调节剂不存在下所观察到的。例如,术语“调节”可意指“抑制”,但词语“调节”的使用不限于此定义。As in this disclosure, the term "regulation of gene expression" means that the expression of a gene, or the level of an RNA molecule or equivalent RNA molecule encoding one or more proteins or protein subunits, is upregulated or downregulated such that the expression, level, or activity is greater or less than that observed in the absence of a regulator. For example, the term "regulation" may mean "inhibition," but the use of the word "regulation" is not limited to this definition.
在本发明中,如无特别说明,术语“抑制”是指由于siRNA介导的靶基因的mRNA降解而使靶基因表达得以下调(down regulation)的情况。所述“下调”是指相对于无siRNA处理时,靶基因表达水平下降5%、10%、15%、20%、25%、30%、35%、40%、45%、50%、55%、60%、65%、70%、75%、80%、85%、90%、95%或99%以上的情况。In this invention, unless otherwise specified, the term "inhibition" refers to the downregulation of target gene expression due to siRNA-mediated mRNA degradation. "Downregulation" means a decrease in target gene expression level of 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, or 99% or more compared to the absence of siRNA treatment.
在本文中,术语“抑制URAT1基因的表达”包括任何水平的URAT1基因的抑制,例如,URAT1基因表达的至少部分抑制,如抑制至少约20%、至少约25%、至少约30%、至少约35%、至少约40%、至少约45%、至少约50%、至少约55%、至少约60%、至少约65%、至少约70%、至少约75%、至少约80%、至少约85%、至少约90%、至少约91%、至少约92%、至少约93%、至少约94%、至少约95%、至少约96%、至少约97%、至少约98%或至少约99%。其中,可以基于与URAT1基因表达相关的任何变量的水平来评价URAT1基因的表达,例如,URAT1的mRNA水平或蛋白水平。可以通过与对照水平相比,这些变量中一个或多个的绝对或相对水平的降低来评价抑制。对照水平可以是本领域中利用的任何类型的对照水平,例如,给药前的基线水平,或从未处理或用对照(如,仅用缓冲剂的对照或无活性剂对照)处理的相似受试者、细胞或样品测定的水平。In this document, the term "inhibition of URAT1 gene expression" includes any level of inhibition of the URAT1 gene, such as at least partial inhibition of URAT1 gene expression, including inhibition of at least about 20%, at least about 25%, at least about 30%, at least about 35%, at least about 40%, at least about 45%, at least about 50%, at least about 55%, at least about 60%, at least about 65%, at least about 70%, at least about 75%, at least about 80%, at least about 85%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, or at least about 99%. URAT1 gene expression can be evaluated based on the level of any variable associated with URAT1 gene expression, such as the mRNA or protein level of URAT1. Inhibition can be evaluated by a decrease in the absolute or relative level of one or more of these variables compared to a control level. The control level can be any type of control level used in the art, such as baseline level before administration, or level measured in similar subjects, cells, or samples that have never been treated or have been treated with a control (e.g., a control with only buffer or a control without active agent).
除了任何常规的辅料外,与本公开的siRNA不兼容的范围,例如所产生的任何不良的生物效应或与药学上可接受的组合物的任何其他组分以有害的方式产生的相互作用,它们的用途也是本公开所考虑的范围。In addition to any conventional excipients, the use of any range of siRNAs incompatible with the present disclosure, such as any adverse biological effects produced or interactions with any other component of a pharmaceutically acceptable composition in a harmful manner, is also within the scope of this disclosure.
在本公开中,除非另有说明,本公开所用试剂的比例均按体积比(v/v)计算。In this disclosure, unless otherwise stated, all proportions of reagents used are calculated on a volume ratio (v/v).
为使本申请的目的、技术方案和优点更加清楚,下面将结合实施例对本申请实施方案作进一步地详细描述。To make the objectives, technical solutions, and advantages of this application clearer, the implementation schemes of this application will be further described in detail below with reference to the embodiments.
双链寡核苷酸:Double-stranded oligonucleotides:
在本公开的第一方面,本公开提供一种用于抑制URAT1基因表达的双链寡核苷酸,所述双链寡核苷酸包括正义链和反义链,所述正义链和所述反义链的长度分别为17-30个核苷酸,且正义链与反义链至少部分地互补。In a first aspect of this disclosure, a double-stranded oligonucleotide for inhibiting URAT1 gene expression is provided, the double-stranded oligonucleotide comprising a sense strand and an antisense strand, the sense strand and the antisense strand being 17-30 nucleotides in length, and the sense strand and the antisense strand being at least partially complementary.
在一些实施方案中,所述反义链长度为21-23个核苷酸;所述正义链长度为19-21个核苷酸。例如所述反义链长度为21个核苷酸,所述正义链长度为19个核苷酸。In some embodiments, the antisense strand is 21-23 nucleotides long, and the sense strand is 19-21 nucleotides long. For example, the antisense strand is 21 nucleotides long, and the sense strand is 19 nucleotides long.
其中,以5’末端起始计,所述反义链包含与SEQ ID NO.70-138、287-296任一所示核苷酸序列的第1-19位核苷酸中差异不多于3个核苷酸的至少17个连续核苷酸。Starting from the 5' end, the antisense strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138 and 287-296.
在一些可选实施方案中,以5’末端起始计,所述反义链包含与SEQ ID NO.70-138、287-296中任一所示的核苷酸序列的第1-19位核苷酸中差异不多于3个核苷酸。In some alternative embodiments, starting from the 5' end, the antisense strand comprises no more than three nucleotides different from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138, 287-296.
在一些可选实施方案中,以5’末端起始计,所述反义链包含与SEQ ID NO.70-138、287-296中任一所示的核苷酸序列的第1-19位核苷酸中差异不多于2个核苷酸。In some alternative embodiments, starting from the 5' end, the antisense strand comprises no more than two nucleotides different from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138, 287-296.
在一些可选实施方案中,以5’末端起始计,所述反义链包含与SEQ ID NO.70-138、287-296中任一所示的核苷酸序列的第1-19位核苷酸中差异不多于1个核苷酸。In some alternative embodiments, starting from the 5' end, the antisense strand comprises no more than one nucleotide different from the nucleotides at positions 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 70-138, 287-296.
在一些可选实施方案中,以5’末端起始计,所述反义链包含选自SEQ ID NO.70-138、287-296中任一所示的核苷酸序列的第1-19位核苷酸。In some alternative embodiments, starting from the 5' end, the antisense strand comprises nucleotides 1-19 of the nucleotide sequence shown in any of SEQ ID NO. 70-138, 287-296.
在一些具体实施方案中,所述反义链选自SEQ ID NO.70-138、287-296中任一所示的核苷酸序列。In some specific embodiments, the antisense strand is selected from any of the nucleotide sequences shown in SEQ ID NO.70-138 and 287-296.
在一些可选实施方案中,所述正义链包含与SEQ ID NO.1-69、277-286中任一所示的核苷酸序列中差异不多于3个核苷酸的至少17个连续核苷酸。In some alternative embodiments, the positive strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotide sequences shown in any of SEQ ID NO. 1-69, 277-286.
在一些可选实施方案中,所述正义链包含与SEQ ID NO.1-69、277-286中任一所示的核苷酸序列中差异不多于3个核苷酸。In some alternative embodiments, the positive strand comprises no more than three nucleotides different from the nucleotide sequences shown in any of SEQ ID NO. 1-69, 277-286.
在一些可选实施方案中,所述正义链包含与SEQ ID NO.1-69、277-286中任一所示的核苷酸序列中差异不多于2个核苷酸。In some alternative embodiments, the positive strand comprises no more than two nucleotides different from the nucleotide sequences shown in any of SEQ ID NO. 1-69, 277-286.
在一些可选实施方案中,所述正义链包含与SEQ ID NO.1-69、277-286中任一所示的核苷酸序列中差异不多于1个核苷酸。In some alternative embodiments, the positive strand comprises no more than one nucleotide different from the nucleotide sequences shown in any of SEQ ID NO. 1-69, 277-286.
在一些具体实施方案中,所述正义链选自与SEQ ID NO.1-69、277-286中任一所示的核苷酸序列。In some specific embodiments, the positive strand is selected from any of the nucleotide sequences shown in SEQ ID NO. 1-69, 277-286.
在一些可选实施方案中,所述正义链与反义链存在不超过3个核苷酸的错配。In some alternative implementations, the sense strand and the antisense strand have a mismatch of no more than 3 nucleotides.
在一些可选实施方案中,所述正义链与反义链存在不超过2个核苷酸的错配。In some alternative implementations, the sense strand and the antisense strand have a mismatch of no more than 2 nucleotides.
在一些可选实施方案中,所述正义链与反义链存在不超过1个核苷酸的错配。In some alternative implementations, the sense strand and the antisense strand have a mismatch of no more than one nucleotide.
在一些具体实施方案中,所述正义链与反义链完全互补。In some specific implementations, the justice chain and the antisense chain are completely complementary.
在一些可选实施方案中,所述双链寡核苷酸包含组RN591001-RN591079中任一组所示的正义链序列、以及组RN591001-RN591079中任一组所示的反义链序列中以5’末端起始计的第1-19个核苷酸序列:
In some alternative embodiments, the double-stranded oligonucleotide comprises the sense strand sequence shown in any one of groups RN591001-RN591079, and the 1st to 19th nucleotide sequences of the antisense strand sequence shown in any one of groups RN591001-RN591079, starting from the 5' end:
在一些具体实施方案中,所述双链寡核苷酸选自组RN591070-RN591079中的任一组。In some specific embodiments, the double-stranded oligonucleotide is selected from any one of the groups RN591070-RN591079.
在另一些具体实施方案中,所述双链寡核苷酸选自RN591008、RN591017、RN591023、RN591047、RN591063、RN591066、RN591075、RN591078中任一组。In some other specific embodiments, the double-stranded oligonucleotide is selected from any one of RN591008, RN591017, RN591023, RN591047, RN591063, RN591066, RN591075, and RN591078.
在一些可选实施方案中,所述双链寡核苷酸至少含有一个经修饰的核苷酸。在另一些可选实施方案中,所述双链寡核苷酸中的每个核苷酸均选自经修饰的核苷酸。In some alternative embodiments, the double-stranded oligonucleotide contains at least one modified nucleotide. In other alternative embodiments, each nucleotide in the double-stranded oligonucleotide is selected from modified nucleotides.
在一些可选实施方案中,所述经修饰的核苷酸包括2'-卤代修饰的核苷酸(例如2'-F修饰的核苷酸)、2'-脱氧修饰的核苷酸、2'-O-C1-6烷基修饰的核苷酸(例如2'-O-CH3修饰的核苷酸)、2'-O-(CH2)n-O-Me修饰的核苷酸(例如2'-O-CH2CH2-O-CH3修饰的核苷酸)、2'-氨基修饰的核苷酸、2',2'-[卤素,卤素]双取代或2',2'-[卤素,C1-6烷基]双取代基修饰的核苷酸、脱碱基核苷酸、或类核苷酸中的至少一种;n选自1或2;所述类核苷酸包括肽核酸(peptide nucleic acid,PNA)、吗啉(Morpholino,MNA)、桥核酸(bridged nucleic acid,BNA)、锁核酸(locked nucleic acid,LNA)、乙二醇核酸/甘油核酸(glycol nucleic acid,GNA)、苏阿糖核酸(threose nucleic acid,TNA)、或非锁定核酸(unlocked nucleic acid,UNA)中的至少一种。In some alternative embodiments, the modified nucleotide includes at least one of the following: 2'-halogenated nucleotides (e.g., 2'-F-modified nucleotides), 2'-deoxy-modified nucleotides, 2'- OC1-6alkyl -modified nucleotides (e.g., 2'-O- CH3- modified nucleotides), 2'-O-( CH2 ) n -O-Me-modified nucleotides (e.g., 2' -O- CH2CH2 -O- CH3- modified nucleotides), 2'-amino-modified nucleotides, nucleotides modified with 2',2'-[halogen, halogen] disubstituted or 2',2'-[halogen, C1-6alkyl ] disubstituted nucleotides, debased nucleotides, or nucleotide-like compounds; n is selected from 1 or 2; the nucleotide-like compounds include peptide nucleic acid (PNA), morpholino (MNA), bridged nucleic acid (BNA), locked nucleic acid (LNA), glycol nucleic acid/glycerol nucleic acid (GNA), and threose nucleic acid. At least one of the following: TNA (tranquil nucleic acid) or unlocked nucleic acid (UNA).
在一些可选实施方案中,所述经修饰的核苷酸包括2'-F修饰的核苷酸、2'-脱氧修饰的核苷酸、2'-O-CH3修饰的核苷酸、2'-O-CH2CH2-O-CH3修饰的核苷酸、或2',2'-[F,CH3]双取代基修饰的核苷酸中的至少一种。在另一些可选实施方案中,所述经修饰的核苷酸包括2'-F修饰的核苷酸、2'-O-CH3修饰的核苷酸或2'-O-CH2CH2-O-CH3修饰的核苷酸中的至少一种。In some alternative embodiments, the modified nucleotide includes at least one of the following: a 2'-F modified nucleotide, a 2'- deoxy modified nucleotide, a 2'-O-CH3 modified nucleotide, a 2' -O- CH2CH2 -O- CH3 modified nucleotide, or a 2',2'-[F, CH3 ] disubstituted nucleotide. In other alternative embodiments, the modified nucleotide includes at least one of the following: a 2'-F modified nucleotide, a 2'-O- CH3 modified nucleotide, or a 2'-O- CH2CH2 - O - CH3 modified nucleotide.
在一些可选实施方案中,所述双链寡核苷酸的反义链长度为21个核苷酸,所述正义链长度为19个核苷酸,且所述双链寡核苷酸中的每个核苷酸均是经过修饰的核苷酸;其中:In some alternative embodiments, the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
按照5'末端到3'末端的方向,所述反义链第2、6、9、12、14、16位中的至少四个核苷酸选自2'-F修饰的核苷酸,除选自2'-F修饰的核苷酸之外的核苷酸位点各自独立地选自2'-O-CH3修饰的核苷酸或2'-O-CH2CH2-O-CH3修饰的核苷酸;所述正义链第7-10位中的至少三个核苷酸选自2'-F修饰的核苷酸,除选自2'-F修饰的核苷酸之外的核苷酸位点选自2'-O-CH3修饰的核苷酸。In the direction from the 5' end to the 3' end, at least four nucleotides at positions 2, 6, 9, 12, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F, and each nucleotide site other than those modified with 2'-F is independently selected from nucleotides modified with 2'-O-CH 3 or nucleotides modified with 2'-O-CH 2 CH 2 -O-CH 3 ; at least three nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and each nucleotide site other than those modified with 2'-F is selected from nucleotides modified with 2'-O-CH 3 .
在一些可选实施方案中,所述双链寡核苷酸的反义链长度为21个核苷酸,所述正义链长度为19个核苷酸,且所述双链寡核苷酸中的每个核苷酸均是经过修饰的核苷酸;其中:In some alternative embodiments, the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
按照5'末端到3'末端的方向,所述反义链第2、6、14、16位核苷酸选自2'-F修饰的核苷酸,第9和12位中的任一核苷酸选自2'-F修饰的核苷酸、另一个核苷酸选自2'-O-CH3修饰的核苷酸,第15位的核苷酸选自2'-O-CH2CH2-O-CH3修饰的核苷酸或2'-O-CH3修饰的核苷酸,其余位置的核苷酸为2'-O-CH3修饰的核苷酸或上述修饰之外的其他修饰核苷酸;所述正义链第7-10位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸选自2'-O-CH3修饰的核苷酸或上述修饰之外的其他修饰核苷酸。In the direction from the 5' end to the 3' end, the nucleotides at positions 2, 6, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F; either nucleotide at position 9 or 12 is selected from nucleotides modified with 2'-F, and the other nucleotide is selected from nucleotides modified with 2'-O-CH 3 ; the nucleotide at position 15 is selected from nucleotides modified with 2'-O-CH 2 CH 2 -O-CH 3 or nucleotides modified with 2'-O-CH 3 ; and the nucleotides at the remaining positions are nucleotides modified with 2'-O-CH 3 or other modified nucleotides besides those mentioned above. The nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are selected from nucleotides modified with 2'-O-CH 3 or other modified nucleotides besides those mentioned above.
在一些可选实施方案中,所述双链寡核苷酸的反义链长度为21个核苷酸,所述正义链长度为19个核苷酸,且所述双链寡核苷酸中的每个核苷酸均是经过修饰的核苷酸;其中:In some alternative embodiments, the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
按照5'末端到3'末端的方向,所述反义链第2、6、14、16位核苷酸选自2'-F修饰的核苷酸,第9和12位中的任一核苷酸选自2'-F修饰的核苷酸、另一个核苷酸选自2'-O-CH3修饰的核苷酸,第15位的核苷酸选自2'-O-CH2CH2-O-CH3修饰的核苷酸或2'-O-CH3修饰的核苷酸,其余位置的核苷酸为2'-O-CH3修饰的核苷酸;所述正义链第7-10位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸选自2'-O-CH3修饰的核苷酸。In the direction from the 5' end to the 3' end, the nucleotides at positions 2, 6, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F; either nucleotide at position 9 or 12 is selected from nucleotides modified with 2'-F, and the other nucleotide is selected from nucleotides modified with 2'-O-CH 3 ; the nucleotide at position 15 is selected from nucleotides modified with 2'-O-CH 2 CH 2 -O-CH 3 or nucleotides modified with 2'-O-CH 3 ; and the nucleotides at the remaining positions are nucleotides modified with 2'-O-CH 3. The nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are selected from nucleotides modified with 2'-O-CH 3 .
在一些可选实施方案中,所述双链寡核苷酸的反义链长度为21个核苷酸,所述正义链长度为19个核苷酸,且所述双链寡核苷酸中的每个核苷酸均是经过修饰的核苷酸;其中:In some alternative embodiments, the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
按照5'末端到3'末端的方向,所述反义链第2、6、9、14、16位核苷酸选自2'-F修饰的核苷酸,第15位的核苷酸选自2'-O-CH2CH2-O-CH3修饰的核苷酸或2'-O-CH3修饰的核苷酸,其余位置的核苷酸为2'-O-CH3修饰的核苷酸或上述修饰之外的其他修饰核苷酸;所述正义链第7-10位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸选自2'-O-CH3修饰的核苷酸或上述修饰之外的其他修饰核苷酸。Following the direction from the 5' end to the 3' end, the nucleotides at positions 2, 6, 9, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F, the nucleotide at position 15 is selected from nucleotides modified with 2' -O- CH2CH2 -O- CH3 or nucleotides modified with 2'-O- CH3 , and the nucleotides at the remaining positions are nucleotides modified with 2'-O- CH3 or other modified nucleotides besides the above modifications; the nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are nucleotides modified with 2' -O-CH3 or other modified nucleotides besides the above modifications.
在一些具体实施方案中,所述双链寡核苷酸的反义链长度为21个核苷酸,所述正义链长度为19个核苷酸,且所述双链寡核苷酸中的每个核苷酸均是经过修饰的核苷酸;其中:In some specific embodiments, the antisense strand of the double-stranded oligonucleotide is 21 nucleotides long, the sense strand is 19 nucleotides long, and each nucleotide in the double-stranded oligonucleotide is a modified nucleotide; wherein:
按照5'末端到3'末端的方向,所述反义链第2、6、9、14、16位核苷酸选自2'-F修饰的核苷酸,第15位的核苷酸选自2'-O-CH2CH2-O-CH3修饰的核苷酸,其余位置的核苷酸为2'-O-CH3修饰的核苷酸;所述正义链第7-10位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸选自2'-O-CH3修饰的核苷酸。Following the direction from the 5' end to the 3' end, the nucleotides at positions 2, 6, 9, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F, the nucleotide at position 15 is selected from nucleotides modified with 2' -O- CH2CH2 -O- CH3 , and the nucleotides at the remaining positions are nucleotides modified with 2'-O- CH3 ; the nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are selected from nucleotides modified with 2'-O- CH3 .
在一些可选实施方案中,所述双链寡核苷酸存在至少一个经修饰的核苷间键,所述经修饰的核苷间键选自硫代磷酸酯核苷间键,且所述硫代磷酸酯核苷间键存在于以下位置1)-5)的至少一处:In some alternative embodiments, the double-stranded oligonucleotide contains at least one modified internucleotide bond selected from phosphate thioester internucleotide bonds, and the phosphate thioester internucleotide bond is present at at least one of the following positions 1)-5):
1)所述正义链以5'末端起始计的第1个核苷酸和第2个核苷酸之间,和/或第2个核苷酸和第3个核苷酸之间;1) Between the first and second nucleotides, and/or between the second and third nucleotides, starting from the 5' end of the positive strand;
2)所述正义链以3'末端起始计的第1个核苷酸和第2个核苷酸之间,和/或第2个核苷酸和第3个核苷酸之间;2) Between the first and second nucleotides of the positive strand, starting from the 3' end, and/or between the second and third nucleotides;
3)所述反义链以5'末端起始的第1个核苷酸和第2个核苷酸之间,和/或第2个核苷酸和第3个核苷酸之间;3) Between the first and second nucleotides, and/or between the second and third nucleotides, starting at the 5' end of the antisense strand;
4)所述反义链以3'末端起始计的第1个核苷酸和第2个核苷酸之间,和/或第2个核苷酸和第3个核苷酸之间,和/或第3个核苷酸和第4个核苷酸之间;4) Between the first and second nucleotides of the antisense strand, starting from the 3' end, and/or between the second and third nucleotides, and/or between the third and fourth nucleotides;
5)所述反义链以5'末端起始计的第10个核苷酸和第11个核苷酸之间。5) Between the 10th and 11th nucleotides of the antisense strand, starting from the 5' end.
在一些可选实施方案中,所述双链寡核苷酸中的每个核苷酸均是经过修饰的核苷酸。In some alternative embodiments, each nucleotide in the double-stranded oligonucleotide is a modified nucleotide.
在一些可选实施方案中,按照5'末端到3'末端的方向,所述反义链第2、6、9、12、14、16位中的至少四个核苷酸选自2'-F修饰的核苷酸,除选自2'-F修饰的核苷酸之外的其它核苷酸位点各自独立地选自2'-O-CH3修饰的核苷酸或2'-O-CH2CH2-O-CH3修饰的核苷酸;所述正义链第7-10位中的至少三个核苷酸选自2'-F修饰的核苷酸,除选自2'-F修饰的核苷酸之外的其它核苷酸位点选自2'-O-CH3修饰的核苷酸。In some alternative embodiments, at least four nucleotides at positions 2, 6, 9, 12, 14, and 16 of the antisense strand, in the direction from the 5' end to the 3' end, are selected from nucleotides modified with 2'-F, and the other nucleotide sites are each independently selected from nucleotides modified with 2'-O- CH3 or nucleotides modified with 2' -O- CH2CH2 -O- CH3 ; at least three nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the other nucleotide sites are selected from nucleotides modified with 2'-O- CH3 .
在一些可选实施方案中,按照5'末端到3'末端的方向,所述反义链第2、6、14、16位核苷酸选自2'-F修饰的核苷酸,第9和12位中的任意一核苷酸选自2'-F修饰的核苷酸、另一个核苷酸选自2'-O-CH3修饰的核苷酸,第15位的核苷酸选自2'-O-CH2CH2-O-CH3修饰的核苷酸或2'-O-CH3修饰的核苷酸,其余位置的核苷酸为2'-O-CH3修饰的核苷酸;所述正义链第7-10位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸选自2'-O-CH3修饰的核苷酸。In some alternative embodiments, in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 6, 14, and 16 of the antisense strand are selected from 2'-F modified nucleotides; one of the nucleotides at positions 9 and 12 is selected from a 2'-F modified nucleotide, and the other nucleotide is selected from a 2'-O-CH 3 modified nucleotide; the nucleotide at position 15 is selected from a 2'-O-CH 2 CH 2 -O-CH 3 modified nucleotide or a 2'-O-CH 3 modified nucleotide; and the nucleotides at the remaining positions are 2'-O-CH 3 modified nucleotides. The nucleotides at positions 7-10 of the sense strand are selected from 2'-F modified nucleotides, and the nucleotides at the remaining positions are selected from 2'-O-CH 3 modified nucleotides.
在一些可选实施方案中,按照5'末端到3'末端的方向,所述反义链第2、6、14、16位核苷酸选自2'-F修饰的核苷酸,第9和12位中的任意一核苷酸选自2'-F修饰的核苷酸、另一个核苷酸选自2'-O-CH3修饰的核苷酸,其余位置的核苷酸为2'-O-CH3修饰的核苷酸;所述正义链第7-10位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸选自2'-O-CH3修饰的核苷酸。In some alternative embodiments, the nucleotides at positions 2, 6, 14, and 16 of the antisense strand are selected from 2'-F modified nucleotides, one of the nucleotides at positions 9 and 12 is selected from a 2'-F modified nucleotide, the other nucleotide is selected from a 2'-O- CH3 modified nucleotide, and the remaining nucleotides are 2'-O- CH3 modified nucleotides; the nucleotides at positions 7-10 of the sense strand are selected from 2'-F modified nucleotides, and the remaining nucleotides are selected from 2'-O- CH3 modified nucleotides.
在一些可选实施方案中,按照5'末端到3'末端的方向,所述反义链第2、6、9、14、16位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸为2'-O-CH3修饰的核苷酸;所述正义链第7-10位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸选自2'-O-CH3修饰的核苷酸。In some alternative embodiments, the nucleotides at positions 2, 6, 9, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are nucleotides modified with 2'-O-CH 3 , in the direction from the 5' end to the 3'end; the nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the nucleotides at the remaining positions are selected from nucleotides modified with 2'-O-CH 3 .
在另一些可选实施方案中,按照5'末端到3'末端的方向,所述反义链第2、6、12、14、16位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸为2'-O-CH3修饰的核苷酸;所述正义链第7-10位核苷酸选自2'-F修饰的核苷酸,其余位置的核苷酸选自2'-O-CH3修饰的核苷酸。In some alternative embodiments, the nucleotides at positions 2, 6, 12, 14, and 16 of the antisense strand are selected from nucleotides modified with 2'-F, and the remaining nucleotides are nucleotides modified with 2'-O- CH3 ; the nucleotides at positions 7-10 of the sense strand are selected from nucleotides modified with 2'-F, and the remaining nucleotides are selected from nucleotides modified with 2'-O- CH3 .
在一些可选实施方案中,所述双链寡核苷酸还存在至少一个经修饰的核苷间键(例如1个、2个、3个、4个、5个、6个、7个或8个等),所述经修饰的核苷间键包括硫代磷酸酯核苷间键或二硫代磷酸酯核苷间键中的至少一种,且至少一个所述经修饰的核苷间键各自独立地选自位于正义链以5'末端起始计的第1个核苷酸和第2个核苷酸之间、正义链以5'末端起始计的第2个核苷酸和第3个核苷酸之间、正义链以3'末端起始计的第1个核苷酸和第2个核苷酸之间、反义链以5'末端起始的第1个核苷酸和第2个核苷酸之间、反义链以5'末端起始的第2个核苷酸和第3个核苷酸之间、反义链以5'末端起始计的第10个核苷酸和第11个核苷酸之间、反义链以3'末端起始计的第1个核苷酸和第2个核苷酸之间、或反义链以3'末端起始计的第2个核苷酸和第3个核苷酸之间。In some alternative embodiments, the double-stranded oligonucleotide further comprises at least one modified nucleotide internucleotide bond (e.g., 1, 2, 3, 4, 5, 6, 7, or 8, etc.), wherein the modified nucleotide internucleotide bond includes at least one of a thiophosphate nucleotide internucleotide bond or a dithiophosphate nucleotide internucleotide bond, and at least one of the modified nucleotide internucleotide bonds is independently selected between the first and second nucleotides of the positive strand starting at the 5' end, and between the second and third nucleotides of the positive strand starting at the 5' end. Between nucleotides, between the first and second nucleotides of the sense strand starting at the 3' end, between the first and second nucleotides of the antisense strand starting at the 5' end, between the second and third nucleotides of the antisense strand starting at the 5' end, between the tenth and eleventh nucleotides of the antisense strand starting at the 5' end, between the first and second nucleotides of the antisense strand starting at the 3' end, or between the second and third nucleotides of the antisense strand starting at the 3' end.
在一些可选实施方案中,所述经修饰的核苷间键选自硫代磷酸酯核苷间键。In some alternative embodiments, the modified nucleoside inter-bond is selected from phosphate thioside inter-bonds.
在一些可选实施方案中,所述双链寡核苷酸存在至少6个经修饰的的核苷间键(例如硫代磷酸酯核苷间键),其中的6个所述经修饰的的核苷间键选自正义链以5’末端起始计的第1位和第2位核苷酸之间,或位于正义链以5’末端起始计的第2位和第3位核苷酸之间,或位于正义链以3’末端起始计的第1位和第2位核苷酸之间,或位于反义链以5’末端起始计的第1位和第2位核苷酸之间,或位于反义链以5’末端起始计的第2位和第3位核苷酸之间,或位于反义链以5’末端起始计的第10位和第11位核苷酸之间,或位于反义链以3’末端起始计的第1位和第2位核苷酸之间,或位于反义链以3’末端起始计的第2位和第3位核苷酸之间中的任意6个位置。In some alternative embodiments, the double-stranded oligonucleotide has at least six modified nucleoside internucleotides (e.g., phosphate thioside internucleotides), wherein the six modified nucleoside internucleotides are selected from any six positions of the following: between the first and second nucleotides of the sense strand starting from the 5' end; between the second and third nucleotides of the sense strand starting from the 5' end; between the first and second nucleotides of the sense strand starting from the 3' end; between the first and second nucleotides of the antisense strand starting from the 5' end; between the second and third nucleotides of the antisense strand starting from the 5' end; between the tenth and eleventh nucleotides of the antisense strand starting from the 5' end; between the first and second nucleotides of the antisense strand starting from the 3' end; or between the second and third nucleotides of the antisense strand starting from the 3' end.
在一些具体实施方案中,所述双链寡核苷酸存在至少6个经修饰的的核苷间键(例如硫代磷酸酯核苷间键),其中6个所述含硫修饰的核苷间键分别位于正义链以5’末端起始计的第1位和第2位核苷酸之间,正义链以5’末端起始计的第2位和第3位核苷酸之间,反义链以5’末端起始计的第1位和第2位核苷酸之间,反义链以5’末端起始计的第2位和第3位核苷酸之间,反义链以3’末端起始计的第1位和第2位核苷酸之间,及反义链以3’末端起始计的第2位和第3位核苷酸之间。In some specific embodiments, the double-stranded oligonucleotide contains at least six modified nucleoside internucleotides (e.g., phosphate thioside internucleotides), wherein the six sulfur-modified nucleoside internucleotides are respectively located between the first and second nucleotides of the sense strand starting from the 5' end, between the second and third nucleotides of the sense strand starting from the 5' end, between the first and second nucleotides of the antisense strand starting from the 5' end, between the second and third nucleotides of the antisense strand starting from the 5' end, between the first and second nucleotides of the antisense strand starting from the 3' end, and between the second and third nucleotides of the antisense strand starting from the 3' end.
在另一些可选实施方案中,所述反义链以5'末端起始计的第10位核苷酸和第11位核苷酸之间的核苷间键选自经修饰的的核苷间键(例如硫代磷酸酯核苷间键),且所述正义链中与所述反义链第10位核苷酸通过碱基互补配对的核苷酸和与所述反义链第11位核苷酸通过碱基互补配对的核苷酸之间的核苷间键选自磷酸酯核苷间键。In some alternative embodiments, the internucleotide bond between the 10th and 11th nucleotides of the antisense strand, starting at the 5' end, is selected from modified internucleotide bonds (e.g., phosphate thioester internucleotide bonds), and the internucleotide bond between the nucleotide in the sense strand that is base-complementarily paired with the 10th nucleotide of the antisense strand and the nucleotide that is base-complementarily paired with the 11th nucleotide of the antisense strand is selected from phosphate ester internucleotide bonds.
在另一些可选实施方案中,所述双链寡核苷酸中存在1个二硫代磷酸酯核苷间键,且该二硫代磷酸酯核苷间键位于正义链以5’末端起始计的第1位和第2位核苷酸之间,或位于正义链以5’末端起始计的第2位和第3位核苷酸之间,或位于正义链以3’末端起始计的第1位和第2位核苷酸之间,或位于反义链以5’末端起始计的第1位和第2位核苷酸之间,或位于反义链以5’末端起始计的第2位和第3位核苷酸之间,或位于反义链以5’末端起始计的第10位和第11位核苷酸之间,或位于反义链以3’末端起始计的第1位和第2位核苷酸之间,或位于反义链以3’末端起始计的第2位和第3位核苷酸之间。In some alternative embodiments, the double-stranded oligonucleotide contains a dithiophosphate nucleoside bond, which is located between the first and second nucleotides of the sense strand starting from the 5' end, or between the second and third nucleotides of the sense strand starting from the 5' end, or between the first and second nucleotides of the sense strand starting from the 3' end, or between the first and second nucleotides of the antisense strand starting from the 5' end, or between the second and third nucleotides of the antisense strand starting from the 5' end, or between the tenth and eleventh nucleotides of the antisense strand starting from the 5' end, or between the first and second nucleotides of the antisense strand starting from the 3' end, or between the second and third nucleotides of the antisense strand starting from the 3' end.
在一些可选实施方案中,所述反义链以5'末端起始计的第1位核苷酸选自或5'-磷酸类似物修饰的核苷酸;所述5'-磷酸类似物修饰的核苷酸选自如下结构所示的任一核苷酸:In some alternative embodiments, the first nucleotide of the antisense strand, starting from the 5' end, is selected from... Or a nucleotide modified with a 5'-phosphate analog; said nucleotide is selected from any nucleotide with the following structure:
其中,Base代表核苷碱基,所述核苷碱基选自A、U、G、C或T;R代表-H、-OH、-CH3、-OCH3、-F。 Wherein, Base represents a nucleoside base, which is selected from A, U, G, C or T; R represents -H, -OH, -CH3 , -OCH3 , -F.
在一些可选实施方案中,所述5'-磷酸类似物修饰的核苷酸选自5'-(E)-乙烯基膦酸酯(5'-(E)-VP)修饰的核苷酸。In some alternative embodiments, the 5'-phosphate analog-modified nucleotide is selected from nucleotides modified with 5'-(E)-vinylphosphonate (5'-(E)-VP).
在一些可选实施方案中,所述反义链以5'末端起始计的第1位核苷酸选自或所述反义链以5'末端起始计的第1位核苷酸选自5'-(E)-VP修饰的核苷酸。在一些具体实施方案中,所述反义链以5'末端起始计的第1位核苷酸选自在另一些具体实施方案中,所述反义链以5'末端起始计的第1位核苷酸选自5'-(E)-VP修饰的核苷酸。In some alternative embodiments, the first nucleotide of the antisense strand, starting from the 5' end, is selected from... Alternatively, the first nucleotide of the antisense strand, starting from the 5' end, may be selected from a nucleotide modified with 5'-(E)-VP. In some specific embodiments, the first nucleotide of the antisense strand, starting from the 5' end, may be selected from... In some other specific embodiments, the first nucleotide of the antisense strand, starting from the 5' end, is selected from a nucleotide modified with 5'-(E)-VP.
在一些可选实施方案中,以5'末端起始计,所述反义链包含与SEQ ID NO.208-276、307-316任一所示的核苷酸序列的第1-19位核苷酸中差异不多于3个核苷酸的至少17个连续核苷酸。In some alternative embodiments, starting from the 5' end, the antisense strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotide sequences 1-19 of any of the nucleotide sequences shown in SEQ ID NO. 208-276, 307-316.
在一些可选实施方案中,以5'末端起始计,所述反义链包含与SEQ ID NO.208-276、307-316任一所示的核苷酸序列的第1-19位核苷酸中差异不多于3个核苷酸。In some alternative embodiments, starting from the 5' end, the antisense strand comprises no more than three nucleotides different from the nucleotides at positions 1-19 of the nucleotide sequences shown in any of SEQ ID NO. 208-276, 307-316.
在一些可选实施方案中,以5'末端起始计,所述反义链包含与SEQ ID NO.208-276、307-316中任一所示的核苷酸序列差异的第1-19位核苷酸不多于2个核苷酸。In some alternative embodiments, starting from the 5' end, the antisense strand contains no more than two nucleotides differing from the nucleotide sequences shown in any of SEQ ID NO. 208-276, 307-316 at positions 1-19.
在一些可选实施方案中,以5'末端起始计,所述反义链包含与SEQ ID NO.208-276、307-316中任一所示的核苷酸序列差异的第1-19位核苷酸不多于1个核苷酸。In some alternative embodiments, starting from the 5' end, the antisense strand contains no more than one nucleotide from positions 1 to 19 that differ from the nucleotide sequences shown in any of SEQ ID NO. 208-276, 307-316.
在一些可选实施方案中,以5'末端起始计,所述反义链包含选自SEQ ID NO.208-276、307-316中任一所示的核苷酸序列的第1-19位核苷酸;In some alternative embodiments, starting from the 5' end, the antisense strand comprises nucleotides 1-19 of the nucleotide sequence shown in any of SEQ ID NO. 208-276 and 307-316;
在一些具体实施方案中,所述反义链选自SEQ ID NO.208-276、307-316中任一所示的核苷酸序列。In some specific embodiments, the antisense strand is selected from any of the nucleotide sequences shown in SEQ ID NO. 208-276 and 307-316.
在一些可选实施方案中,所述正义链包含与SEQ ID NO.139-207、297-306任一所示的核苷酸序列中差异不多于3个核苷酸的至少17个连续核苷酸。In some alternative embodiments, the positive strand comprises at least 17 consecutive nucleotides that differ by no more than 3 nucleotides from the nucleotide sequences shown in any of SEQ ID NO. 139-207, 297-306.
在一些可选实施方案中,所述正义链包含与SEQ ID NO.139-207、297-306任一所示的核苷酸序列中差异不多于3个核苷酸。In some alternative embodiments, the positive strand comprises no more than three nucleotides different from the nucleotide sequences shown in any of SEQ ID NO. 139-207, 297-306.
在一些可选实施方案中,所述正义链包含与SEQ ID NO.139-207、297-306任一所示的核苷酸序列中差异不多于2个核苷酸。In some alternative embodiments, the positive strand contains no more than two nucleotides different from the nucleotide sequences shown in any of SEQ ID NO. 139-207, 297-306.
在一些可选实施方案中,所述正义链包含与SEQ ID NO.139-207、297-306任一所示的核苷酸序列中差异不多于1个核苷酸。In some alternative embodiments, the positive strand comprises no more than one nucleotide different from the nucleotide sequences shown in any of SEQ ID NO. 139-207, 297-306.
在一些具体实施方案中,所述正义链选自SEQ ID NO.139-207、297-306中任一所示的核苷酸序列。In some specific embodiments, the positive strand is selected from any of the nucleotide sequences shown in SEQ ID NO. 139-207 and 297-306.
在一些可选实施方案中,所述双链寡核苷酸选自组RX591070-RX591079中任一组所示的正义链序列、以及组RX591070-RX591079中任一组所示的反义链序列以5'末端起始计的第1-19个核苷酸序列:
In some alternative embodiments, the double-stranded oligonucleotide is selected from the sense strand sequence shown in any one of groups RX591070-RX591079, and the 1st to 19th nucleotide sequences of the antisense strand sequence shown in any one of groups RX591070-RX591079, starting from the 5' end:
在一些具体实施方案中,所述双链寡核苷酸选自RX591001-RX591079中任一组。In some specific embodiments, the double-stranded oligonucleotide is selected from any one of RX591001-RX591079.
在另一些具体实施方案中,所述双链寡核苷酸选自RX591008、RX591017、RX591023、RX591047、RX591063、RX591066、RX591075、RX591078中任一组。In some other specific embodiments, the double-stranded oligonucleotide is selected from any one of RX591008, RX591017, RX591023, RX591047, RX591063, RX591066, RX591075, and RX591078.
缀合物:Conjugates:
本公开的第二方面,本公开提供一种缀合物,其包含本公开第一方面所述的双链寡核苷酸以及缀合连接到双链寡核苷酸上的一个或多个靶向配体基团。In a second aspect, this disclosure provides a conjugate comprising the double-stranded oligonucleotide described in the first aspect of this disclosure and one or more targeting ligand groups conjugated to the double-stranded oligonucleotide.
在一些可选实施方案中,所述靶向配体基团靶向肾脏Megalin受体或肾脏利钠肽受体。In some alternative embodiments, the targeting ligand group targets the renal megalin receptor or the renal natriuretic peptide receptor.
在一些可选实施方案中,所述靶向配体基团选自包含至少4个氨基酸的多肽片段。In some alternative embodiments, the targeting ligand group is selected from polypeptide fragments containing at least four amino acids.
在一些可选实施方案中,所述靶向配体基团包括下列1)-6)所示的任一多肽片段:In some alternative embodiments, the targeting ligand group comprises any of the polypeptide fragments shown in 1)-6) below:
1)-X1(KKEEE)n-Km-,其中,n=1-5,m=0或1或2,X1选自除K、E之外的任意L-α氨基酸或L-β氨基酸);1) -X1 (KKEEE) n - Km- , where n=1-5, m=0 or 1 or 2, and X1 is selected from any L-α amino acid or L-β amino acid other than K and E;
2)-CLPVASC-,优选环肽形式 2)-CLPVASC-, preferably in cyclic peptide form
3)-CYFQNC-,优选环肽形式 3)-CYFQNC-, preferably in cyclic peptide form
4)-KIDRI-;4)-KIDRI-;
5)-IDRI-(Ile-Asp-Arg-Ile-);5)-IDRI-(Ile-Asp-Arg-Ile-);
6)-dXa-Ser-dXb-X2-dXc-Gly-Xd-Ile-Asp-Arg(Ak)-Ile-;其中,X2选自任意的非天然氨基酸;dXa,dXb,dXc选自任意的D型氨基酸;Arg(Ak)选自精氨酸或烷基化修饰的精氨酸;Xd选自Hyp或Pro。6)-dXa-Ser-dXb-X 2- dXc-Gly-Xd-Ile-Asp-Arg(Ak)-Ile-; where X 2 is selected from any non-natural amino acid; dXa, dXb, dXc are selected from any D-type amino acid; Arg(Ak) is selected from arginine or alkylated arginine; Xd is selected from Hyp or Pro.
在一些可选实施方案中,所述靶向配体基团选自包含a)-g)所示的任一氨基酸序列区段的多肽:In some alternative embodiments, the targeting ligand group is selected from polypeptides comprising any of the amino acid sequence segments shown in a)-g).
a)-KKEEE-KKEEE-KKEEE-K-;a)-KKEEE-KKEEE-KKEEE-K-;
b)-CKKEEE-KKEEE-KKEEE-K;b)-CKKEEE-KKEEE-KKEEE-K;
c)-CLPVASC-,优选环肽形式 c)-CLPVASC-, preferably in cyclic peptide form
d)-KIDRI-;d)-KIDRI-;
e)-CYFQNCPRG-,优选环肽形式 e)-CYFQNCPRG-, preferably in cyclic peptide form
f)-DPhe-Ser-DHyp-Cha-DAla-Gly-Hyp-Ile-Asp-Arg(Me)-Ile-;f)-DPhe-Ser-DHyp-Cha-DAla-Gly-Hyp-Ile-Asp-Arg(Me)-Ile-;
g)-DPhe-Ser-DPro-Cha-DAla-Gly-Pro-Ile-Asp-Arg-Ile-。g)-DPhe-Ser-DPro-Cha-DAla-Gly-Pro-Ile-Asp-Arg-Ile-.
在一些可选实施方案中,所述靶向配体基团通过接头连接所述双链寡核苷酸;In some alternative embodiments, the targeting ligand group is linked to the double-stranded oligonucleotide via a linker;
任选地,所述缀合物中靶向配体基团-接头的结构单元选自以下1)-7)所示的任一结构:Optionally, the structural unit of the targeting ligand group-connector in the conjugate is selected from any of the structures shown in 1)-7) below:
1)La-KKEEE-KKEEE-KKEEE-K-Laa;1)La-KKEEE-KKEEE-KKEEE-K-Laa;
2)La-CKKEEE-KKEEE-KKEEE-K-Laa;2)La-CKKEEE-KKEEE-KKEEE-K-Laa;
3)La-CLPVASC-Laa,优选为环肽形式 3) La-CLPVASC-Laa, preferably in cyclic peptide form.
4)La-DPhe-Ser-DHyp-Cha-DAla-Gly-Hyp-Ile-Asp-Arg(Me)-Ile-Laa;4)La-DPhe-Ser-DHyp-Cha-DAla-Gly-Hyp-Ile-Asp-Arg(Me)-Ile-Laa;
5)La-CYFQNCPRG-Laa;优选环肽形式 5) La-CYFQNCPRG-Laa; preferably cyclic peptide form.
6)La-DPhe-Ser-DPro-Cha-DAla-Gly-Pro-Ile-Asp-Arg-Ile-Laa;6)La-DPhe-Ser-DPro-Cha-DAla-Gly-Pro-Ile-Asp-Arg-Ile-Laa;
7)Lb-KIDRI-Laa;7) Lb-KIDRI-Laa;
在式1)-6)中,La和Laa中的任意一个为接头,另一个为末端封闭基团;In formulas 1)-6), either La or Laa is a linker and the other is a terminal blocking group;
在式7)中,Lb和Laa中的任意一个为接头,另一个为末端封闭基团;In formula 7), either Lb or Laa is a linker, and the other is a terminal blocking group;
所述接头为包含三氮唑基或PEG单元或酰基中的至少一个基团的连接基团。The connector is a linker group containing at least one of the following groups: triazole group, PEG unit, or acyl group.
在一些可选实施方案中,在式1)-6)中,La为接头,Laa为末端封闭基团,La选自包括-PEG2-CH2CH2CO-或-三氮唑基-PEG2-的连接基团;Laa选自氨基、或烷基取代的胺基,如-NHCH3。In some alternative embodiments, in formulas 1)-6), La is a linker, Laa is a terminal blocking group, and La is selected from linking groups including -PEG2- CH2CH2CO- or -triazolyl - PEG2- ; Laa is selected from amino or alkyl-substituted amino groups, such as -NHCH3 .
在一些可选实施方案中,在式7)中,Lb为接头,Laa为末端封闭基团,Lb选自包含6-10元芳环或杂芳环的连接基团;Laa选自氨基、或烷基取代的胺基,如-NHCH3。In some alternative embodiments, in Formula 7), Lb is a linker and Laa is a terminal closing group. Lb is selected from a linker group containing a 6-10 membered aromatic ring or a heteroaromatic ring; Laa is selected from an amino or alkyl-substituted amino group, such as -NHCH3 .
在一些可选实施方案中,所述靶向配体基团通过接头连接到所述双链寡核苷酸的正义链和或反义链的末端(例如所述正义链的3’末端、和/或所述正义链的5’末端、和/或所述正义链的3’末端)。In some alternative embodiments, the targeting ligand group is connected via a linker to the ends of the sense and/or antisense strands of the double-stranded oligonucleotide (e.g., the 3' end of the sense strand, and/or the 5' end of the sense strand, and/or the 3' end of the sense strand).
在一些可选实施方案中,所述缀合物中靶向配体基团-接头的结构选自a)-j)所示的任一结构、或其药学上可接受的盐:In some alternative embodiments, the structure of the targeting ligand group-connector in the conjugate is selected from any of the structures shown in a)-j), or a pharmaceutically acceptable salt thereof:
a)-La-KKEEE-KKEEE-KKEEE-K-Lc;a)-La-KKEEE-KKEEE-KKEEE-K-Lc;
b)-La-CKKEEE-KKEEE-KKEEE-K-Lc;b)-La-CKKEEE-KKEEE-KKEEE-K-Lc;
c)-La-CLPVASC-Lc;优选环肽形式 c)-La-CLPVASC-Lc; preferably cyclic peptide form
d)-La-DPhe-Ser-DHyp-Cha-DAla-Gly-Hyp-Ile-Asp-Arg(Me)-Ile-Lc;d)-La-DPhe-Ser-DHyp-Cha-DAla-Gly-Hyp-Ile-Asp-Arg(Me)-Ile-Lc;
e)-La-CYFQNCPRG-Lc;优选为环肽形式 e)-La-CYFQNCPRG-Lc; preferably in cyclic peptide form.
f)-La-DPhe-Ser-DPro-Cha-DAla-Gly-Pro-Ile-Asp-Arg-Ile-Lc;f)-La-DPhe-Ser-DPro-Cha-DAla-Gly-Pro-Ile-Asp-Arg-Ile-Lc;
g) g)
h) h)
i) i)
j) j)
其中,La为接头,其独立地选自任意键、-NH-、酰胺基或包含至少一个PEG单元的连接基团;Lc为末端封闭基团。Wherein, La is a linker, which is independently selected from any bond, -NH-, amide group or linking group containing at least one PEG unit; Lc is a terminal blocking group.
在一些可选实施方案中,La为包含至少2个PEG单元的连接基团。In some alternative embodiments, La is a linking group containing at least two PEG units.
在一些可选实施方案中,La选自酰胺基,或n为1-3(例如1、2、3),m为0或1,Z为-CO-(羰基)或-NH-;代表与双链寡核苷酸共价连接的位点,*代表与多肽片段共价连接的位点。In some alternative embodiments, La is selected from amide groups, or n is 1-3 (e.g., 1, 2, 3), m is 0 or 1, and Z is -CO- (carbonyl) or -NH-. * represents a site covalently linked to a double-stranded oligonucleotide, and * represents a site covalently linked to a polypeptide fragment.
在一些可选实施方案中,Lc为多肽片段中C端的封闭基团。在另一些可选实施方案中,所述Lc选自氨基或烷基取代的胺基(例如-NHCH3)。In some alternative embodiments, Lc is a blocking group at the C-terminus of the polypeptide fragment. In other alternative embodiments, the Lc is selected from amino or alkyl-substituted amino groups (e.g., -NHCH3 ).
药物组合物:Pharmaceutical composition:
在本公开的第三方面,本公开提供一种药物组合物,其包含本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的所述的缀合物。In a third aspect of this disclosure, a pharmaceutical composition is provided comprising the double-stranded oligonucleotide described in the first aspect of this disclosure and/or the conjugate described in the second aspect of this disclosure.
在一些可选实施方案中,所述药物组合物中还包括一种或多种药学上可接受的载体或辅料。In some alternative embodiments, the pharmaceutical composition may further include one or more pharmaceutically acceptable carriers or excipients.
在制备抑制URAT1基因表达的药物中的用途:Uses in the preparation of drugs that inhibit URAT1 gene expression:
在本公开的第四方面,本公开提供一种本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的缀合物和/或本公开第三方面所述的药物组合物在制备抑制URAT1基因表达的药物中的用途。In a fourth aspect of this disclosure, the present disclosure provides the use of the double-stranded oligonucleotides described in the first aspect of this disclosure, and/or the conjugates described in the second aspect of this disclosure, and/or the pharmaceutical compositions described in the third aspect of this disclosure in the preparation of a medicament for inhibiting URAT1 gene expression.
在制备用于治疗和/或预防与URAT1表达相关的病理状况或疾病的药物中的用途:Use in the preparation of medicaments for the treatment and/or prevention of pathological conditions or diseases associated with URAT1 expression:
在本公开的第五方面,本公开提供一种本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的缀合物和/或本公开第三方面所述的药物组合物用于治疗和/或预防与URAT1表达相关的病理状况或疾病的药物中的用途。In a fifth aspect of this disclosure, this disclosure provides the use of the double-stranded oligonucleotides described in the first aspect of this disclosure, and/or the conjugates described in the second aspect of this disclosure, and/or the pharmaceutical compositions described in the third aspect of this disclosure, in a medicament for treating and/or preventing pathological conditions or diseases associated with URAT1 expression.
在一些可选实施方案中,所述病理状况或疾病为高尿酸血症或痛风。In some alternative implementations, the pathological condition or disease is hyperuricemia or gout.
抑制URAT1基因表达的方法:Methods to suppress URAT1 gene expression:
在本公开的第六方面,本公开提供一种抑制URAT1基因表达的方法,其包括向受试者施用有效剂量的本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的缀合物和/或本公开第三方面所述的药物组合物权。In a sixth aspect of this disclosure, this disclosure provides a method for inhibiting URAT1 gene expression, comprising administering to a subject an effective dose of the double-stranded oligonucleotide of the first aspect of this disclosure, and/or the conjugate of the second aspect of this disclosure, and/or the pharmaceutical composition of the third aspect of this disclosure.
在一些可选实施方案中,所述受试者是人。在另一些可选实施方式中,所述受试者是细胞,例如Vero细胞或HuH1细胞。In some alternative embodiments, the subject is a human being. In other alternative embodiments, the subject is a cell, such as Vero cells or HuH1 cells.
预防和/或治疗高尿酸血症或痛风的方法:Methods for preventing and/or treating hyperuricemia or gout:
在本公开的第七方面,本公开提供一种预防和/或治疗高尿酸血症或痛风的方法,其包括向受试者施用有效剂量的本公开第一方面所述的双链寡核苷酸、和/或本公开第二方面所述的缀合物和/或本公开第三方面所述的药物组合物权。In a seventh aspect of this disclosure, this disclosure provides a method for preventing and/or treating hyperuricemia or gout, comprising administering to a subject an effective dose of the double-stranded oligonucleotide of the first aspect of this disclosure, and/or the conjugate of the second aspect of this disclosure, and/or the pharmaceutical composition of the third aspect of this disclosure.
在一些可选实施方案中,所述受试者是人。In some alternative implementations, the subject is a human being.
本公开所述的双链寡核苷酸、双链寡核苷酸缀合物或药物组合物的有效量可随给药的模式和待治疗的疾病的严重程度等而变化。具体的,有效量的选择可以由本领域普通技术人员根据各种因素来确定(例如通过临床试验)。所述的因素包括但不限于:所述的活性成分的药代动力学参数例如生物利用率、代谢、半衰期等;患者所要治疗的疾病的严重程度、患者的体重、患者的免疫状况、给药的途径等。The effective amount of the double-stranded oligonucleotides, double-stranded oligonucleotide conjugates, or pharmaceutical compositions described in this disclosure may vary depending on the administration method and the severity of the disease to be treated. Specifically, the effective amount can be determined by those skilled in the art based on various factors (e.g., through clinical trials). These factors include, but are not limited to: pharmacokinetic parameters of the active ingredient, such as bioavailability, metabolism, and half-life; the severity of the disease to be treated, the patient's weight, the patient's immune status, and the route of administration.
可通过本领域己知的任何合适途径向受试者给药,所述途径包括但不仅限于:口服或胃肠外途径,包括静脉内给药、肌肉内给药、皮下给药、经皮给药、气道给药(气雾剂)、肺部给药、鼻部给药、直肠给药和局部给药(包括口腔含化给药和舌下给药),如静脉注射内给药。The medication may be administered to the subject via any suitable route known in the art, including but not limited to: oral or parenteral routes, including intravenous administration, intramuscular administration, subcutaneous administration, transdermal administration, airway administration (aerosol), pulmonary administration, nasal administration, rectal administration, and local administration (including oral and sublingual administration), such as intravenous administration.
本公开提供的双链寡核苷酸、双链寡核苷酸缀合物及药物组合物能有效抑制URAT1基因表达,有助于治疗和/或预防与URAT1表达相关的病理状况或疾病。The double-stranded oligonucleotides, double-stranded oligonucleotide conjugates, and pharmaceutical compositions disclosed herein can effectively inhibit URAT1 gene expression, which can help treat and/or prevent pathological conditions or diseases related to URAT1 expression.
为使本公开的目的、技术方案和优点更加清楚,下面将结合实施例对本公开实施方案作进一步地详细描述。To make the objectives, technical solutions, and advantages of this disclosure clearer, the embodiments of this disclosure will be described in further detail below with reference to examples.
除非另有说明,本公开所用试剂、试剂耗材以及仪器设备均来源于市售。其中,主要试剂耗材如表1所示,主要仪器设备如表2所示。Unless otherwise stated, all reagents, reagent consumables, and instruments used in this disclosure are commercially available. The main reagents and consumables are shown in Table 1, and the main instruments and equipment are shown in Table 2.
表1主要试剂耗材
Table 1 Main Reagents and Consumables
表2主要仪器设备
Table 2 Main Instruments and Equipment
制备例1、siRNA的合成:Preparation Example 1: Synthesis of siRNA
siRNA序列设计:siRNA sequence design:
本公开的siRNA序列靶向URAT1基因的所有转录本及预测转录本(NM_144585.4、NM_153378.3、NM_001276326.2、NM_001276327.2、XM_006718430.5、XM_006718431.5、XM_054367604.1、XM_054367605.1),URAT1基因序列信息均来源于NCBI基因数据库(https://www.ncbi.nlm.nih.gov/gene/)。The disclosed siRNA sequences target all transcripts and predicted transcripts of the URAT1 gene (NM_144585.4, NM_153378.3, NM_001276326.2, NM_001276327.2, XM_006718430.5, XM_006718431.5, XM_054367604.1, XM_054367605.1). The URAT1 gene sequence information is obtained from the NCBI gene database (https://www.ncbi.nlm.nih.gov/gene/).
siRNA的合成:siRNA synthesis:
(1-1)正义链(SS)和反义链(AS)的合成:(1-1) Composition of the Justice Chain (SS) and Antisense Chain (AS):
通过亚磷酰胺核酸固相合成法的方法,利用上述连接至固相载体的化合物(例如CPG载体、PS载体)起始循环,按照核苷酸序列从3'端到5'端的方向逐一连接核苷单体。The phosphoramidol solid-phase synthesis method for nucleic acids involves starting a cycle using the aforementioned compound (e.g., CPG carrier, PS carrier) linked to a solid-phase support, and then linking nucleoside monomers one by one in the direction from the 3' end to the 5' end of the nucleotide sequence.
每连接一个核苷单体都包括脱保护、偶联、盖帽、氧化或硫化四步反应。合成条件给定如下:Each connection of a nucleoside monomer involves four steps: deprotection, coupling, capping, and oxidation or sulfidation. The synthetic conditions are given below:
将核苷单体配制成浓度为0.1M的核苷单体的乙腈溶液。The nucleoside monomer was prepared into an acetonitrile solution with a concentration of 0.1 M.
每一步的脱保护反应的条件相同。脱保护反应的条件:温度为25℃,反应时间为70秒,脱保护试剂为浓度为3%(v/v)的二氯乙酸的二氯甲烷溶液,二氯乙酸与固相载体上4,4'-二甲氧基三苯甲基保护基的摩尔比为5:1。The deprotection reaction conditions were the same for each step. The deprotection reaction conditions were: temperature 25℃, reaction time 70 seconds, and the deprotection reagent was a 3% (v/v) dichloroacetic acid solution in dichloromethane. The molar ratio of dichloroacetic acid to the 4,4'-dimethoxytriphenylmethyl protecting group on the solid support was 5:1.
每一步偶联反应的条件相同。偶联反应的条件为:温度为25℃,固相载体上连接的核酸序列与核苷单体的摩尔比为1:10,固相载体上连接的核酸序列和偶联试剂的摩尔比为1:65,反应时间为600秒,偶联试剂为浓度为0.5M的5-乙硫基-1H-四氮唑的乙腈溶液,硫代试剂为浓度为0.2mol/L的氢化黄原素的乙腈/吡啶混合溶液(乙腈和吡啶体积比为1:1)。The conditions for each coupling reaction were identical. The coupling reaction conditions were as follows: temperature 25℃, molar ratio of nucleic acid sequence to nucleoside monomer on the solid-phase support 1:10, molar ratio of nucleic acid sequence to coupling reagent on the solid-phase support 1:65, reaction time 600 seconds, coupling reagent 0.5M acetonitrile solution of 5-ethylthio-1H-tetrazole, and thioreagent 0.2mol/L acetonitrile/pyridine mixed solution of hydrogenated xanthanin (acetonitrile and pyridine volume ratio 1:1).
每一步盖帽反应的条件均相同。盖帽反应的条件为:温度为25℃;反应时间为2分钟;盖帽试剂溶液为Cap1和Cap2的混合溶液。Cap1为浓度为20%(v/v)的N-甲基咪唑的吡啶/乙腈混合溶液,吡啶与乙腈的体积比为3:5,Cap2为浓度为20%(v/v)的乙酸酐的乙腈溶液;Cap1盖帽试剂中的N-甲基咪唑、Cap2盖帽试剂中的乙酸酐与固相载体上连接的核酸序列的摩尔比为1:1:1。The conditions for each capping reaction were identical. The conditions for the capping reaction were: temperature 25℃; reaction time 2 minutes; and the capping reagent solution was a mixture of Cap1 and Cap2. Cap1 was a 20% (v/v) N-methylimidazole pyridine/acetonitrile mixture, with a volume ratio of pyridine to acetonitrile of 3:5. Cap2 was a 20% (v/v) acetic anhydride acetonitrile solution. The molar ratio of N-methylimidazole in Cap1 and acetic anhydride in Cap2 to the nucleic acid sequence linked on the solid-phase support was 1:1:1.
每一步氧化反应的条件相同。氧化反应的条件为:温度为25℃;反应时间为3秒;氧化试剂浓度为0.05M的碘水,碘与偶联反应中固相载体上连接的核酸序列的摩尔比为30:1;氧化反应在水/吡啶混和溶剂(水和吡啶的体积比为1:9)中进行。硫化反应的条件为:温度为25℃;反应时间为360秒;硫代试剂浓度为0.2M氢化黄原素的吡啶溶液,硫代试剂与偶联反应中固相载体上连接的核酸序列的摩尔比为4:1;硫代反应在在水/吡啶混和溶剂(水和吡啶的体积比为1:9)中进行。The conditions for each oxidation reaction were identical. The oxidation reaction conditions were: temperature 25°C; reaction time 3 seconds; oxidizing agent concentration of 0.05M iodine solution, with a molar ratio of iodine to the nucleic acid sequence linked on the solid support in the coupling reaction of 30:1; the oxidation reaction was carried out in a water/pyridine mixed solvent (water to pyridine volume ratio 1:9). The sulfidation reaction conditions were: temperature 25°C; reaction time 360 seconds; thioreagent concentration of 0.2M hydroflavin in pyridine solution, with a molar ratio of thioreagent to the nucleic acid sequence linked on the solid support in the coupling reaction of 4:1; the thioreagent reaction was carried out in a water/pyridine mixed solvent (water to pyridine volume ratio 1:9).
待最后一个核苷单体连接完成后,依次对固相载体上连接的核酸序列进行切割、脱保护、纯化、脱盐,随后冻干获得正义链,其中:After the last nucleoside monomer was ligated, the nucleic acid sequence ligated on the solid-phase support was sequentially cut, deprotected, purified, and desalted, and then freeze-dried to obtain the positive strand, wherein:
切割和脱保护条件如下:将合成的连接有固相载体的核苷酸序列加入到浓度为25wt%的氨水中,氨水用量为0.5ml/μmol,在55℃下反应16小时,除去溶剂,真空浓缩至干。在氨水处理后,相对于单链核酸的量,用0.4ml/μmol N-甲基吡咯烷酮溶解产品,随后加入0.3ml/μmol三乙胺和0.6ml/μmol三乙胺三氢氟酸盐,脱除核糖上的2'-O-TBDMS保护。The cleavage and deprotection conditions were as follows: The synthesized nucleotide sequence linked to a solid-phase support was added to 25 wt% ammonia solution at a concentration of 0.5 mL/μmol. The reaction was carried out at 55 °C for 16 hours. The solvent was removed, and the solution was concentrated to dryness under vacuum. After ammonia treatment, the product was dissolved in 0.4 mL/μmol N-methylpyrrolidone relative to the amount of single-stranded nucleic acid. Subsequently, 0.3 mL/μmol triethylamine and 0.6 mL/μmol triethylamine trifluoride were added to deprotect the 2'-O-TBDMS protection on the ribose.
纯化和脱盐的条件:利用制备型离子色谱纯化柱(Source 15Q)通过NaCl的梯度洗脱,完成核酸的纯化。具体而言为:洗脱剂1为20mM磷酸钠(pH=8.1),溶剂为水/乙腈混合溶液(水和乙腈的体积比为9:1);洗脱剂2为1.5M氯化钠,20mM磷酸钠(pH=8.1),溶剂为水/乙腈混合溶液(水和乙腈的体积比为9:1);洗脱梯度为洗脱剂1:洗脱剂2=(100:0)-(50:50)。收集产品洗脱液后合并,采用反向色谱纯化柱进行脱盐,脱盐条件包括采用葡聚糖凝胶柱进行脱盐,填料为葡聚糖凝胶G25,以去离子水洗脱。Purification and desalting conditions: Nucleic acid purification was performed using a preparative ion chromatography column (Source 15Q) with a NaCl gradient elution. Specifically: eluent 1 was 20 mM sodium phosphate (pH = 8.1), and the solvent was a water/acetonitrile mixture (water to acetonitrile volume ratio of 9:1); eluent 2 was 1.5 M sodium chloride, 20 mM sodium phosphate (pH = 8.1), and the solvent was a water/acetonitrile mixture (water to acetonitrile volume ratio of 9:1); the elution gradient was eluent 1: eluent 2 = (100:0) - (50:50). The product eluates were collected and combined, and desalting was performed using a reverse chromatographic purification column. Desalting conditions included using a dextran gel column (g25 packing material) and elution with deionized water.
检测:使用离子交换色谱(IEX-HPLC)进行纯度检测;使用液质联用(LC-MS)进行分子量检测,比较分子量的实测值与理论值,若实测值和理论值一致,表明得到目标正义链和反义链。Detection: Purity was determined using ion exchange chromatography (IEX-HPLC); molecular weight was determined using liquid chromatography-mass spectrometry (LC-MS). The measured molecular weight was compared with the theoretical value. If the measured value and the theoretical value were consistent, it indicated that the target sense and antisense strands were obtained.
(1-2)siRNA的合成:(1-2) Synthesis of siRNA:
将步骤(1-1)中合成的正义链和反义链以等摩尔比混合,溶于注射用水中并加热至95℃,缓慢冷却至室温并在室温下保持10分钟,使正义链和反义链通过氢键形成双链结构,从而得到表4a和4b所示的siRNA。The sense and antisense strands synthesized in step (1-1) were mixed in an equimolar ratio, dissolved in water for injection, and heated to 95°C. The mixture was then slowly cooled to room temperature and kept at room temperature for 10 minutes to allow the sense and antisense strands to form a double-stranded structure through hydrogen bonds, thereby obtaining the siRNA shown in Tables 4a and 4b.
表3a、未修饰的siRNA核苷酸序列信息:
Table 3a. Nucleotide sequence information of unmodified siRNA:
表4a、修饰的siRNA序列信息:
Table 4a. Modified siRNA sequence information:
表3b、未修饰的siRNA序列信息:
Table 3b. Unmodified siRNA sequence information:
表4b、修饰的siRNA序列信息:
Table 4b. Modified siRNA sequence information:
如无特别说明,本公开所述的碱基组成及修饰含义如下:大写字母A、U、G、C、T表示核苷酸的碱基组成,小写字母m表示该字母m左侧相邻的一个大写字母所示核苷酸为2'-O-CH3修饰的核苷酸;小写字母f表示该字母f左侧相邻的一个大写字母所示核苷酸为2'-F修饰的核苷酸;(moe)表示(moe)左侧相邻的一个大写字母所示核苷酸为2'-O-CH2CH2-O-CH3修饰的核苷酸;小写字母s表示该字母s左右相邻的两个核苷酸之间的核苷间键为硫代磷酸酯键核苷间键。Unless otherwise specified, the base composition and modifications described in this disclosure have the following meanings: uppercase letters A, U, G, C, and T represent the base composition of nucleotides; lowercase letter m indicates that the nucleotide represented by the uppercase letter to the left of m is modified with 2'-O-CH 3 ; lowercase letter f indicates that the nucleotide represented by the uppercase letter to the left of f is modified with 2'-F; (moe) indicates that the nucleotide represented by the uppercase letter to the left of (moe) is modified with 2'-O-CH 2 CH 2 -O-CH 3 ; lowercase letter s indicates that the nucleoside bond between the two nucleotides to the left and right of s is a phosphate thioester nucleoside bond.
2'-O-CH3修饰的核苷酸的结构式为 The structural formula of the nucleotide modified with 2'-O- CH3 is as follows:
2'-F修饰的核苷酸的结构式为 The structural formula of the nucleotide modified by 2'-F is:
2'-O-CH2CH2-O-CH3修饰的核苷酸的结构式为 The structural formula of the nucleotide modified with 2'-O- CH2CH2 - O - CH3 is as follows:
其中,Base代表核苷碱基,所述核苷碱基选自A、U、G、C或T。Q代表-OH、-O-、-SH或-S-。Wherein, Base represents a nucleoside base, which is selected from A, U, G, C, or T. Q represents -OH, -O- , -SH, or -S- .
除非另有说明,本公开所用的siRNA序列(修饰)均由苏州炫景生物科技有限公司合成。Unless otherwise stated, all siRNA sequences (modifications) used in this disclosure were synthesized by Suzhou Xuanjing Biotechnology Co., Ltd.
生物学检测实验Biological testing experiments
除另有说明,本公开在生物学检测实验中所用序列均为修饰的siRNA。Unless otherwise stated, all sequences used in biological detection experiments in this disclosure are modified siRNAs.
除另有说明,本公开所用的PCR引物均委托北京擎科生物科技有限公司合成。Unless otherwise stated, all PCR primers used in this disclosure were synthesized by Beijing Qingke Biotechnology Co., Ltd.
除另有说明,在实时荧光定量PCR法中,采用ΔΔCt法对各测试组中目标基因mRNA的表达水平和抑制率进行相对定量计算,计算方法如下:
ΔCt(测试组)=Ct(测试组目标基因)-Ct(测试组内参基因)
ΔCt(空白对照组)=Ct(空白对照组目标基因)-Ct(空白对照组内参基因)
ΔΔCt(测试组)=ΔCt(测试组)-ΔCt(空白对照组平均)
ΔΔCt(空白对照组)=ΔCt(空白对照组)-ΔCt(空白对照组平均)Unless otherwise stated, in real-time quantitative PCR, the ΔΔCt method is used to calculate the relative quantitative levels and inhibition rates of target gene mRNA in each test group. The calculation method is as follows:
ΔCt(test group) = Ct(target gene in test group) - Ct(internal reference gene in test group)
ΔCt(blank control group) = Ct(target gene in blank control group) - Ct(internal reference gene in blank control group)
ΔCt(test group) = ΔCt(test group) - ΔCt(mean of blank control group)
ΔCt(blank control group) = ΔCt(blank control group) - ΔCt(blank control group average)
其中,在细胞实验中,ΔCt(空白对照组平均)是空白对照组中几个培养孔ΔCt(空白对照组)的算术平均值。因此,测试组和空白对照组的每个样本均对应一个ΔΔCt值。
测试组目标基因mRNA相对表达水平=2-ΔΔCt(测试组)×100%In cell experiments, ΔCt (mean of the blank control group) is the arithmetic mean of the ΔCt values of several culture wells in the blank control group. Therefore, each sample in both the test group and the blank control group corresponds to a ΔCt value.
The relative expression level of the target gene mRNA in the test group = 2 - ΔΔCt(test group) × 100%
以空白对照组为基准,测试组目标基因mRNA相对表达水平进行归一化,定义空白对照组目标基因mRNA相对表达水平为100%。Using the blank control group as a baseline, the relative expression level of the target gene mRNA in the test group was normalized, and the relative expression level of the target gene mRNA in the blank control group was defined as 100%.
测试组目标基因mRNA表达抑制率=100%-测试组目标基因mRNA相对表达水平The inhibition rate of target gene mRNA expression in the test group = 100% - the relative expression level of target gene mRNA in the test group
除非另有说明,抑制活性实验数据均以(X±STDEV)表示实验数据均采用GraphPad prism 8.0软件进行制图和分析。Unless otherwise stated, all data on inhibitory activity are presented in accordance with the experimental figures. (X±STDEV) indicates that all experimental data were plotted and analyzed using GraphPad Prism 8.0 software.
实施例1、评估siRNA序列在Vero细胞上对靶基因尿酸盐转运蛋白1(Urate transporter1;URAT1)的抑制活性: Example 1: Evaluation of the inhibitory activity of siRNA sequences on the target gene urate transporter 1 (URAT1) in Vero cells :
本实施例采用体外细胞转染的方法评估siRNA序列在Vero细胞上对目标靶基因URAT1的抑制活性。In this embodiment, an in vitro cell transfection method was used to evaluate the inhibitory activity of siRNA sequences on the target gene URAT1 in Vero cells.
Vero细胞(北京理工大学馈赠)用完全培养基(含10%胎牛血清和1%双抗的DMEM培养基)于5%CO2,37℃进行培养,在细胞生长密度达80%后,用胰酶消化并重悬。重悬的细胞用完全培养基调整密度并以0.6×105/孔接种至24孔板,培养24h后进行转染操作。Vero cells (gifted by Beijing Institute of Technology) were cultured in complete medium (DMEM medium containing 10% fetal bovine serum and 1% penicillin-dextrose antibiotics) at 5% CO2 and 37°C. After reaching 80% confluence, the cells were digested with trypsin and resuspended. The resuspended cells were then adjusted to a density of 0.6 × 10⁵ cells /well in complete medium and seeded into 24-well plates. After 24 hours of culture, transfection was performed.
siRNA转染混合物的配置:将siRNA用PBS配置成20μM浓度的母液,然后按每孔取1.5μl siRNA母液加入48.5μl Opti-MEM培养基稀释作为50μl siRNA工作液;每孔按3μlRNAiMAX转染试剂加入47μl Opti-MEM培养基稀释,室温条件下孵育5分钟,作为50μl转染试剂工作液;然后将50μl siRNA工作液与50μl转染试剂工作液混合,即配置为siRNA转染混合物。其中,MOCK组为50μl Opti-MEM培养基与50μl转染试剂工作液混合。Preparation of siRNA transfection mixture: Prepare a 20 μM stock solution of siRNA with PBS. Then, add 1.5 μL of the siRNA stock solution to each well and dilute it with 48.5 μL of Opti-MEM medium to prepare 50 μL of siRNA working solution. Add 3 μL of the stock solution to each well. The RNAiMAX transfection reagent was diluted in 47 μl of Opti-MEM medium and incubated at room temperature for 5 minutes to prepare a 50 μl working solution for transfection. Then, 50 μl of siRNA working solution was mixed with the 50 μl working solution of the transfection reagent to prepare the siRNA transfection mixture. For the MOCK group, 50 μl of Opti-MEM medium was mixed with 50 μl of the working solution of the transfection reagent.
转染当天24孔板每孔更换500μl/孔Opti-MEM培养基,每孔加入对应的100μl siRNA转染混合物或MOCK组转染混合物,siRNA终浓度为50nM/孔。On the day of transfection, replace 500 μl of Opti-MEM medium per well in each 24-well plate, and add 100 μl of the corresponding siRNA transfection mixture or MOCK group transfection mixture to each well. The final concentration of siRNA is 50 nM per well.
继续培养24h后按照化学提取方法提取总RNA提取。即每孔去除培养基后加入1mL Trizol溶液,吹打裂解细胞,将裂解液转移到1.5mL离心管中,加入200μL三氯甲烷,上下翻转振荡混匀后室温放置3min。4℃,12000rpm离心10min。吸取400μL上清加入400μL异丙醇的离心管中,混匀,室温放置10min。4℃,12000rpm离心10min,弃上清。加入1mL 75%乙醇,上下颠倒离心管,洗涤沉淀。4℃,12000rpm离心5min,去除上清,室温晾干,提取得到总RNA。After culturing for another 24 hours, total RNA was extracted using a chemical extraction method. Specifically, after removing the culture medium from each well, 1 mL of Trizol solution was added, and cells were lysed by pipetting. The lysate was transferred to a 1.5 mL centrifuge tube, and 200 μL of chloroform was added. The tube was vortexed and incubated at room temperature for 3 min. The cells were then centrifuged at 12000 rpm for 10 min at 4 °C. 400 μL of the supernatant was transferred to a centrifuge tube containing 400 μL of isopropanol, mixed, and incubated at room temperature for 10 min. The tube was then centrifuged at 12000 rpm for 10 min at 4 °C, and the supernatant was discarded. 1 mL of 75% ethanol was added, and the centrifuge tube was inverted to wash the precipitate. The tube was then centrifuged at 12000 rpm for 5 min at 4 °C, the supernatant was discarded, and the cells were air-dried at room temperature to obtain total RNA.
取上述1μg总RNA,使用反转录试剂盒(Promega公司,Reverse Transcription System,A3500)并选取Oligo(dT)15逆转录引物,按照反转录试剂盒说明书记载的方法配置20μL逆转录体系并完成逆转录反应。反应结束后,向逆转录体系中加入80μL RNase-Free水,得到cDNA溶液。接着使用实时荧光定量PCR试剂盒(ABI公司,SYBRTMSelect Master Mix,Catalog number:4472908)检测vero细胞中目标基因mRNA的表达量。在该实时荧光定量PCR法中,使用针对目标基因的引物和针对内参基因的引物分别对目标基因和内参基因进行检测。按照实时荧光定量PCR试剂盒说明书记载的方法配置每个PCR检测孔20μL Real-time PCR反应体系,每个反应体系中含有5μL上述逆转录反应得到的cDNA溶液、10μL SYBRTMSelect Master Mix、0.5μL 10μM上游引物、0.5μL 10μM下游引物、4μL RNase-Free H2O。将配置好的反应体系置于实时荧光定量PCR仪(ABI公司,StepOnePlusTM)上,使用三步法进行Real-time PCR扩增,扩增程序为95℃预变性10min,然后95℃变性30s,60℃退火30s,72℃延伸30s,重复变性、退火、延伸的过程40个循环。Take 1 μg of total RNA, and use a reverse transcription kit (Promega, Reverse Transcription System, A3500) with Oligo(dT)15 reverse transcription primers. Prepare a 20 μL reverse transcription system according to the instructions and complete the reverse transcription reaction. After the reaction, add 80 μL of RNase-free water to the reverse transcription system to obtain a cDNA solution. Then, use a real-time quantitative PCR kit (ABI, SYBR ™ Select Master Mix, Catalog number: 4472908) to detect the expression level of the target gene mRNA in Vero cells. In this real-time quantitative PCR method, primers targeting the target gene and primers targeting the internal reference gene were used to detect the target gene and the internal reference gene, respectively. Prepare a 20 μL Real-time PCR reaction system for each PCR detection well according to the instructions of the Real-time PCR kit. Each reaction system contains 5 μL of cDNA solution obtained from the above reverse transcription reaction, 10 μL of SYBR ™ Select Master Mix, 0.5 μL of 10 μM upstream primer, 0.5 μL of 10 μM downstream primer, and 4 μL of RNase-Free H2O. Place the prepared reaction system on a Real-time PCR instrument (ABI, StepOnePlus ™ ) and perform Real-time PCR amplification using a three-step method. The amplification program is as follows: 95℃ pre-denaturation for 10 min, then 95℃ denaturation for 30 s, 60℃ annealing for 30 s, and 72℃ extension for 30 s. Repeat the denaturation, annealing, and extension process for 40 cycles.
表5实施例1所用引物的序列表
Table 5. Sequence list of primers used in Example 1
实施例1的结果表明,所设计的序列均能有效降低URAT1 mRNA的表达,其中RX591008、RX591011、RX591013、RX591014、RX591017、RX591018、RX591019、RX591022和RX591024序列相对具有更好的基因抑制水平(表6)。The results of Example 1 show that all designed sequences can effectively reduce the expression of URAT1 mRNA, among which RX591008, RX591011, RX591013, RX591014, RX591017, RX591018, RX591019, RX591022 and RX591024 sequences have relatively better gene repression levels (Table 6).
表6给予本实施例所述siRNA缀合物后,Vero细胞目标靶基因的抑制活性
Table 6 shows the inhibitory activity of Vero cells on the target genes after administration of the siRNA conjugate described in this embodiment.
实施例2、评估siRNA序列在HuH1细胞中对靶基因URAT1的抑制活性:Example 2: Evaluation of the inhibitory activity of siRNA sequence on the target gene URAT1 in HuH1 cells:
本实施例采用体外细胞转染的方法评估siRNA序列在HuH1细胞上对目标靶基因URAT1的抑制活性。In this embodiment, an in vitro cell transfection method was used to evaluate the inhibitory activity of siRNA sequences on the target gene URAT1 in HuH1 cells.
HuH1细胞(武汉普诺赛生物科技有限公司)用完全培养基(含10%胎牛血清和1%双抗的DMEM培养基)于5%CO2,37℃进行培养,待细胞生长密度达80%后,用胰酶消化并重悬。重悬的细胞用完全培养基调整密度并以0.6×105/孔接种至24孔板,培养24h后进行转染操作。HuH1 cells (Wuhan Pronosai Biotechnology Co., Ltd.) were cultured in complete medium (DMEM medium containing 10% fetal bovine serum and 1% penicillin-dextrose antibiotics) at 5% CO2 and 37°C. Once the cell density reached 80%, the cells were digested with trypsin and resuspended. The resuspended cells were then adjusted to a density of 0.6 × 10⁵ cells/well in complete medium and seeded into 24-well plates. After 24 hours of culture, transfection was performed.
siRNA转染混合物的配置:将siRNA用PBS缓冲液分别配置20μM、0.4μM、0.2μM浓度的母液,然后按每孔取1.5μl siRNA母液加入48.5μl Opti-MEM培养基稀释作为50μl siRNA工作液;每孔按3μlRNAiMAX转染试剂加入47μl Opti-MEM培养基稀释,室温条件下孵育5分钟,作为50μl转染试剂工作液;然后将50μl siRNA工作液与50μl转染试剂工作液混合,即配置为siRNA转染混合物。其中,MOCK组为50μl Opti-MEM培养基与50μl转染试剂工作液混合。Preparation of siRNA transfection mixture: Prepare stock solutions of siRNA with PBS buffer at concentrations of 20 μM, 0.4 μM, and 0.2 μM, respectively. Then, take 1.5 μl of the siRNA stock solution from each well and dilute it with 48.5 μl of Opti-MEM medium to prepare 50 μl of siRNA working solution; add 3 μl of the stock solution to each well. The RNAiMAX transfection reagent was diluted in 47 μl of Opti-MEM medium and incubated at room temperature for 5 minutes to prepare a 50 μl working solution for transfection. Then, 50 μl of siRNA working solution was mixed with the 50 μl working solution of the transfection reagent to prepare the siRNA transfection mixture. For the MOCK group, 50 μl of Opti-MEM medium was mixed with 50 μl of the working solution of the transfection reagent.
转染当天24孔板每孔更换500μl/孔Opti-MEM培养基,每孔加入对应的100μl siRNA转染混合物或MOCK组转染混合物,siRNA终浓度分别为50nM/孔、1nM/孔及0.5nM/孔。On the day of transfection, replace 500 μl of Opti-MEM medium per well in each 24-well plate, and add 100 μl of the corresponding siRNA transfection mixture or MOCK group transfection mixture to each well. The final siRNA concentrations are 50 nM/well, 1 nM/well, and 0.5 nM/well, respectively.
继续培养24h后按照化学提取方法提取总RNA提取。即每孔去除培养基后加入1mL Trizol溶液,吹打裂解细胞,将裂解液转移到1.5mL离心管中,加入200μL三氯甲烷,上下翻转振荡混匀后室温放置3min。4℃,12000rpm离心10min。吸取400μL上清加入400μL异丙醇的离心管中,混匀,室温放置10min。4℃,12000rpm离心10min,弃上清。加入1mL 75%乙醇,上下颠倒离心管,洗涤沉淀。4℃,12000rpm离心5min,去除上清,室温晾干,提取得到总RNA。After culturing for another 24 hours, total RNA was extracted using a chemical extraction method. Specifically, after removing the culture medium from each well, 1 mL of Trizol solution was added, and cells were lysed by pipetting. The lysate was transferred to a 1.5 mL centrifuge tube, and 200 μL of chloroform was added. The tube was vortexed and incubated at room temperature for 3 min. The cells were then centrifuged at 12000 rpm for 10 min at 4 °C. 400 μL of the supernatant was transferred to a centrifuge tube containing 400 μL of isopropanol, mixed, and incubated at room temperature for 10 min. The tube was then centrifuged at 12000 rpm for 10 min at 4 °C, and the supernatant was discarded. 1 mL of 75% ethanol was added, and the centrifuge tube was inverted to wash the precipitate. The tube was then centrifuged at 12000 rpm for 5 min at 4 °C, the supernatant was discarded, and the cells were air-dried at room temperature to obtain total RNA.
检测目标基因mRNA表达水平:取上述总RNA(1μg),按照TaqMan Fast Advanced Master Mix(ABI公司,Catalog number:4444557)说明书记载的方法进行实时荧光定量PCR,即每个反应孔配置20μL Real-time PCR反应体系,每个反应体系中含有5μL上述逆转录反应得到的cDNA溶液、10μLTaqMan Fast Advanced Master Mix、0.4μL 10μM上游引物、0.4μL 10μM下游引物、0.2μL 10μM探针、3μL RNase-Free H2O。将配置好的反应体系置于实时荧光定量PCR仪(ABI公司,StepOnePlusTM/7500)上,使用两步法进行Real-time PCR扩增,扩增程序为50℃预变性2min,95℃预变性20s,然后95℃变性3s,60℃退火30s,重复变性、退火的过程40个循环。To detect the mRNA expression level of the target gene: Take the total RNA (1 μg) mentioned above and perform real-time quantitative PCR according to the method described in the TaqMan Fast Advanced Master Mix (ABI, Catalog number: 4444557) manual. That is, each reaction well contains 20 μL of real-time PCR reaction system, and each reaction system contains 5 μL of cDNA solution obtained from the above reverse transcription reaction, 10 μL of TaqMan Fast Advanced Master Mix, 0.4 μL of 10 μM upstream primer, 0.4 μL of 10 μM downstream primer, 0.2 μL of 10 μM probe, and 3 μL of RNase-free H2O . The prepared reaction system was placed on a real-time quantitative PCR instrument (ABI, StepOnePlus ™ /7500) and amplified using a two-step method. The amplification program was 50℃ pre-denaturation for 2 min, 95℃ pre-denaturation for 20 s, then 95℃ denaturation for 3 s, and 60℃ annealing for 30 s. The denaturation and annealing process was repeated for 40 cycles.
表7实施例2所用引物序列信息:
Table 7 Primer sequence information used in Example 2:
实施例2的结果表明(表8-9),所设计的序列均能有效降低URAT1 mRNA的表达,其中RX591008、RX591017、RX591023、RX591047、RX591063、RX591066、RX591075、RX591078序列相对具有更好的基因抑制水平。The results of Example 2 (Tables 8-9) show that all designed sequences can effectively reduce the expression of URAT1 mRNA, among which the sequences RX591008, RX591017, RX591023, RX591047, RX591063, RX591066, RX591075, and RX591078 have relatively better gene repression levels.
表8实施例2中在siRNA序列转染终浓度为50nM/孔时,HuH1细胞中对目标靶基因URAT1的抑制活性:
Table 8 shows the inhibitory activity of the target gene URAT1 in HuH1 cells at a final siRNA sequence transfection concentration of 50 nM/well in Example 2:
表9、实施例2中在siRNA序列转染终浓度为1nM/孔及0.5nM/孔时,HuH1细胞中对目标靶基因URAT1的抑制活性:
Table 9. Inhibitory activity of siRNA sequence transfection against the target gene URAT1 in HuH1 cells at final concentrations of 1 nM/well and 0.5 nM/well in Example 2:
以上具体实施方式只是对本发明内容的示意性说明,不代表本发明内容的限制。对于本领域内的普通技术人员而言,在不脱离本公开的精神和实质的情况下,可以做出各种变型和改进,这些变型和改进也视为本公开的保护范围。The above specific embodiments are merely illustrative of the present invention and do not represent a limitation thereof. For those skilled in the art, various modifications and improvements can be made without departing from the spirit and substance of this disclosure, and these modifications and improvements are also considered to be within the scope of protection of this disclosure.
Claims (19)
The double-stranded oligonucleotide according to any one of claims 1-4 is characterized in that: the double-stranded oligonucleotide comprises the sense strand sequence shown in any one of groups RN591001-RN591079, and the 1st to 19th nucleotide sequences of the antisense strand sequence shown in any one of groups RN591001-RN591079, starting from the 5' end:
Optionally, the double-stranded oligonucleotide is selected from the sense strand sequence shown in any one of the groups RX591001-RX591079 and the 1st to 19th nucleotide sequences of the antisense strand sequence shown in any one of the groups RX591001-RX591079, starting from the 5' end.
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