WO2025206092A1 - Compound and pharmaceutical composition for regulating myoregulin expression - Google Patents
Compound and pharmaceutical composition for regulating myoregulin expressionInfo
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- WO2025206092A1 WO2025206092A1 PCT/JP2025/012308 JP2025012308W WO2025206092A1 WO 2025206092 A1 WO2025206092 A1 WO 2025206092A1 JP 2025012308 W JP2025012308 W JP 2025012308W WO 2025206092 A1 WO2025206092 A1 WO 2025206092A1
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- modified oligonucleotide
- base sequence
- pharmaceutically acceptable
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- acceptable salt
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
- A61K31/7115—Nucleic acids or oligonucleotides having modified bases, i.e. other than adenine, guanine, cytosine, uracil or thymine
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
- A61K31/712—Nucleic acids or oligonucleotides having modified sugars, i.e. other than ribose or 2'-deoxyribose
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K31/00—Medicinal preparations containing organic active ingredients
- A61K31/70—Carbohydrates; Sugars; Derivatives thereof
- A61K31/7088—Compounds having three or more nucleosides or nucleotides
- A61K31/7125—Nucleic acids or oligonucleotides having modified internucleoside linkage, i.e. other than 3'-5' phosphodiesters
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P21/00—Drugs for disorders of the muscular or neuromuscular system
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P21/00—Drugs for disorders of the muscular or neuromuscular system
- A61P21/04—Drugs for disorders of the muscular or neuromuscular system for myasthenia gravis
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
Definitions
- the present invention relates to a compound for reducing at least one of the pre-mRNA level, mRNA level, and protein level of Myoregulin (MRLN) in an animal, and a pharmaceutical composition containing the compound.
- MRLN Myoregulin
- MRLN Myoregulin
- DMD Duchenne muscular dystrophy
- MRLN siRNA which suppresses MRLN mRNA expression
- MRLN antisense oligonucleotides to DMD model mice (mdx mice) and sarcoglycanopathy model mice (sarcoglycan ⁇ knockout mice) to reduce MRLN gene expression resulted in a decrease in creatine kinase levels, a clinical indicator of muscular dystrophy and caused by muscle damage and muscle cell death, in both model mice (Patent Document 1).
- Sarcoglycanopathy is a general term for limb girdle muscular dystrophy (LGMD) types 2C to 2F.
- suppressing the expression level of MRLN can increase the amount of calcium uptake into the sarcoplasmic reticulum, making it effective in treating or preventing muscle diseases such as muscular dystrophy, which are accompanied by muscle damage, muscle cell death, and/or decreased muscle contractility due to abnormal calcium influx into the cytoplasm.
- MRLN antisense oligonucleotides that suppress the expression level of MRLN for the treatment of muscle diseases.
- the MRLN antisense oligonucleotides reported to date were designed based on the base sequence of the mouse MRLN gene (Patent Document 1), making their clinical application for the treatment or prevention of human muscle disease patients difficult.
- the present invention provides compounds for inhibiting MRLN expression.
- a modified oligonucleotide consisting of 12 to 30 linked nucleosides or a pharmaceutically acceptable salt thereof, which has an activity of inhibiting Myoregulin expression, wherein the modified oligonucleotide is located at positions 15 to 41, 62 to 108, 448 to 471, 649 to 666, 848 to 863, 1104 to 1119, 1232 to 1254, 1691 to 1719, 1735 to 1751, 2195 to 2211, 3195 to 3211, 3215 to 3215, 3216 to 3217, 3218 to 3219, 3220 to 3221, 3222 to 3222, 3223 to 3224, 3225 to 3225, 3226 to 3227, 3228 to 3229, 3230 to 3231, 3232 to 3232, 3233 to 3234, 3235 to 3235, 3236 to 3237, 3238 to 3239, 3240 to 3241, 3242 to 3243, 3244 to 3245, 3246 to 3248, 3248 to 3249,
- the modified oligonucleotide is selected from the group consisting of positions 1232 to 1254, 1691 to 1719, 1735 to 1751, 2195 to 2211, 2289 to 2308, 3431 to 3446, 4127 to 4142, 4156 to 4171, 4500 to 4515, 5522 to 5537, 5727 to 5742, 5772 to 5803, 5998 to 6013, 6272 to 6287, 6763 to 6778, 8013 to 8028, 98
- the modified oligonucleotide or a pharmaceutically acceptable salt thereof according to [1] comprising a base sequence that is 100% complementary to any 8 or more consecutive bases in any of the base sequences at positions 46 to 9864, 14963 to 14978, 16235 to 16254, 16256 to 16273, 16281 to 16306, or 16316 to 16331, and the full-length base sequence of the modified oligonucleotide is 85% or more complementary to an equal-length portion of the base sequence of SEQ ID
- a modified oligonucleotide consisting of 12 to 30 linked nucleosides, or a pharmaceutically acceptable salt thereof, which has activity of inhibiting Myoregulin expression, wherein the modified oligonucleotide comprises a base sequence that is 100% complementary to any 8 or more consecutive bases in any of the base sequences at positions 15 to 41, 62 to 91, 100 to 129, 160 to 225, 227 to 244, 252 to 277, 287 to 307, 485 to 507, 549 to 564, 581 to 608, or 695 to 710 from the 5' end of the base sequence of SEQ ID NO: 2 in the Sequence Listing, and the full-length base sequence of the modified oligonucleotide is 85% or more complementary to an equal-length portion of the base sequence of SEQ ID NO: 2 in the Sequence Listing.
- modified oligonucleotide or a pharmaceutically acceptable salt thereof according to [3], wherein the modified oligonucleotide comprises a base sequence that is 100% complementary to any 8 or more consecutive bases in any of the base sequences at positions 172 to 187, 201 to 225, 227 to 244, 252 to 277, or 287 to 302 from the 5' end of the base sequence of SEQ ID NO: 2 in the Sequence Listing, and the full-length base sequence of the modified oligonucleotide is 85% or more complementary to the equal-length portion of the base sequence of SEQ ID NO: 2 in the Sequence Listing.
- a modified oligonucleotide or a pharmaceutically acceptable salt thereof having an activity of suppressing Myoregulin expression wherein the base sequence of the modified oligonucleotide is CCAGAATTATCCCGCT (complementary sequence of positions 16238 to 16253 of SEQ ID NO: 1) (SEQ ID NO: 275 in the Sequence Listing), TCCAGAATTATCCCGC (complementary sequence of positions 16239 to 16254 of SEQ ID NO: 1) (SEQ ID NO: 276 in the Sequence Listing), AGTTTTTACCAGTCAT (complementary sequence of positions 16256 to 16271 of SEQ ID NO: 1) (SEQ ID NO: 277 in the Sequence Listing), CCAGTTTTACCAGTC (complementary sequence of positions 16258 to 16273 of SEQ ID NO: 1) (SEQ ID NO: 278 in the Sequence Listing), GACTTTTTGGGAGTAGT (complementary sequence of positions 16289 to 16304 of SEQ ID NO: 1) (SEQ ID NO:
- a modified oligonucleotide or a pharmaceutically acceptable salt thereof having an activity of suppressing Myoregulin expression wherein the base sequence of the modified oligonucleotide is TTATCCCGCTCCCTGA (complementary sequence of positions 203 to 218 of SEQ ID NO: 2) (SEQ ID NO: 273 in the Sequence Listing) or ATTATCCCGCTCCCTG (complementary sequence of positions 204 to 219 of SEQ ID NO: 2) (SEQ ID NO: 280 in the Sequence Listing)
- a modified oligonucleotide or a pharmaceutically acceptable salt thereof which is any of the base sequences shown below, or a base sequence consisting of 17 or 18 consecutive bases including said base sequence, and wherein the full-length base sequence of the modified oligonucleotide is a base sequence that is 100% complementary to the equal-length portion of the base sequence of SEQ ID NO: 2.
- modified oligonucleotide or a pharmaceutically acceptable salt thereof according to any one of [1] to [6], wherein the modified oligonucleotide is single-stranded.
- the bicyclic sugar is selected from the group consisting of LNA, ALNA[Ms], ALNA[mU], ALNA[ipU], ALNA[Oxz], and ALNA[Trz] sugar moieties.
- the modified oligonucleotide or a pharmaceutically acceptable salt thereof according to [9] or [10] wherein the bicyclic sugar is the sugar moiety of ALNA[Ms].
- the modified internucleoside bond is a phosphorothioate internucleoside bond.
- the modified oligonucleotide or a pharmaceutically acceptable salt thereof according to any one of [1] to [16], wherein all of the sugar moieties of the nucleosides constituting the 5' wing segment and the 3' wing segment are modified sugars.
- a pharmaceutical composition comprising the modified oligonucleotide according to any one of [1] to [17] or a pharmaceutically acceptable salt thereof.
- the pharmaceutical composition according to [20] wherein the muscle disease is muscular dystrophy.
- Base sequence means the order of consecutive bases.
- Nucleoside refers to a molecule consisting of a sugar and a base.
- Linked nucleosides means nucleosides that are linked by internucleoside linkages in a contiguous sequence.
- Nucleotide refers to a molecule in which a phosphate group is attached to the sugar portion of a nucleoside. Naturally occurring nucleotides have a ribose or deoxyribose sugar portion.
- Internucleoside bond refers to the chemical bond between nucleosides.
- Modified internucleoside linkage refers to a substitution or any change from a naturally occurring internucleoside linkage (i.e., a phosphodiester internucleoside linkage). For example, but not limited to, a phosphorothioate internucleoside linkage.
- Modified base refers to any base other than adenine, cytosine, guanine, thymidine, or uracil. For example, but not limited to, 5-methylcytosine.
- Modified nucleoside means a nucleoside having, independently, a modified sugar or modified base.
- Modified oligonucleotide means an oligonucleotide containing at least one modified nucleoside and/or modified internucleoside linkage.
- Substituted sugar means a furanosyl sugar other than the natural sugars of RNA or DNA, but does not include bicyclic sugars.
- Bicyclic sugar means a furanosyl modified by bridging two different carbon atoms among the four carbon atoms forming the furanosyl ring.
- “Isometric portion” refers to a portion of the base sequence of a second nucleic acid that has a length equal to the length of the base sequence of a first nucleic acid.
- the first nucleic acid is a modified oligonucleotide and the second nucleic acid is MRLN pre-mRNA or MRLN mRNA.
- “Complementary” refers to the capacity for pairing between the bases of a first nucleic acid and a second nucleic acid.
- adenine is complementary to thymidine or uracil.
- cytosine is complementary to guanine.
- 5-methylcytosine is complementary to guanine.
- 100% complementary means that the base sequence of a first nucleic acid is completely complementary to the base sequence of a second nucleic acid.
- the first nucleic acid is a modified oligonucleotide and the target nucleic acid is the second nucleic acid.
- mismatch refers to a case where a base in a first nucleic acid cannot pair with the corresponding base in a second nucleic acid or target nucleic acid.
- Target nucleic acid refers to a nucleic acid, RNA, and RNA transcript, respectively, that can be targeted by a modified oligonucleotide.
- the target nucleic acid comprises a region of MRLN mRNA or MRLN pre-mRNA.
- “Pharmaceutically acceptable salt” means a physiologically and pharmaceutically acceptable salt of the modified oligonucleotide of the present invention, including salts formed with inorganic ions such as metal ions on the phosphorothioate or phosphodiester, or on functional groups (e.g., amino groups) in the modified base.
- “Individual” means a human or non-human animal selected for treatment or therapy.
- the base sequence is a base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases, including the complementary base sequence consisting of 16 consecutive bases.
- the full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the base sequence of the same length portion in SEQ ID NO: 2.
- the base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases is a base sequence in which 1 to 4, preferably 1 and/or 2, nucleosides are linked by internucleoside bonds at the 5' or 3' end of the complementary base sequence consisting of 16 consecutive bases.
- the nucleosides and/or internucleoside bonds may be modified nucleosides and/or modified internucleoside bonds.
- the full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the base sequence of the same length portion in SEQ ID NO: 1.
- TTATCCCGCTCCCTGA complementary sequence of positions 203 to 218 of SEQ ID NO: 218 of SEQ ID NO: 2
- ATTATCCCGCTCCCTG complementary sequence of positions 204 to 219 of SEQ ID NO: 2
- SEQ ID NO: 280 in the Sequence Listing or a base sequence comprising 17, 18, 19, or 20, preferably 17 or 18, consecutive bases containing the base sequence.
- the full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the base sequence of the isolength portion of SEQ ID NO: 2.
- the full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the base sequence of the same length portion in SEQ ID NO: 1.
- the base sequence of such a modified oligonucleotide is more preferably: AGTTTTTACCAGTCAT (complementary sequence of positions 16256 to 16271 of SEQ ID NO: 1) (SEQ ID NO: 277 in the Sequence Listing), CCAGTTTTTTACCAGTC (complementary sequence of positions 16258 to 16273 of SEQ ID NO: 1) (SEQ ID NO: 278 in the Sequence Listing) or AGACTTTTGGGGAGTAG (complementary sequence of positions 16290 to 16305 of SEQ ID NO: 1) (SEQ ID NO: 229 in the Sequence Listing) or a base sequence comprising 17, 18, 19, or 20, preferably 17 or 18, consecutive bases containing the base sequence.
- the full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the equal-length portion of the base sequence of SEQ ID NO: 1.
- the full-length base sequence of the modified oligonucleotide is a base sequence that is 90% or more, preferably 95% or more, and more preferably 100% complementary to the base sequence of the isomeric portion in SEQ ID NO:1.
- the base sequence may be the base sequence set forth in SEQ ID NO:273 or SEQ ID NO:274, or a base sequence comprising said base sequence and consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases.
- the full-length base sequence of the s-modified oligonucleotide is 90% or more, preferably 95% or more, and more preferably 100% complementary to the base sequence of the isolength portion in SEQ ID NO: 2.
- the modified oligonucleotide is 90% or more, preferably 95% or more, and more preferably 100% complementary to the equal-length portion of the base sequence in SEQ ID NO: 1.
- the nucleoside containing a bicyclic sugar is a nucleoside having formula (I), as defined above in ALNA[mU], wherein: B is a base; R 1 , R 2 , R 3 and R 4 are each independently a hydrogen atom; R5 and R6 are each independently a hydrogen atom; m is 1; X is represented by the following formula (II-1): is a group represented by the formula: A nucleoside in which one of R7 and R8 is a hydrogen atom and the other is an unsubstituted isopropyl group (see, for example, WO 2020/100826).
- the bicyclic (sugar portion of ALNA[Trz]) containing nucleoside is a nucleoside having formula (I) as defined above in ALNA[mU], wherein: B is a base; R 1 , R 2 , R 3 and R 4 are each independently a hydrogen atom; R5 and R6 are each independently a hydrogen atom; m is 1; X is represented by the following formula (II-2): is a group represented by the formula: A is a nucleoside in which A is a 1,5-dimethyl-1,2,4-triazol-3-yl group (see, for example, WO 2020/100826).
- the nucleoside containing a bicyclic sugar is a nucleoside having formula (I), as defined above in ALNA[mU], wherein: B is a base; R 1 , R 2 , R 3 and R 4 are each independently a hydrogen atom; R5 and R6 are each independently a hydrogen atom; m is 1; X is represented by the following formula (II-2): is a group represented by the formula: A is a nucleoside in which A is a 5-methyl-1,2,4-oxadiazol-3-yl group (see, for example, WO 2020/100826).
- the modified oligonucleotide of the present invention is preferably one in which at least one of the internucleoside linkages comprising it contains a modified internucleoside linkage.
- Modified oligonucleotides having such modified internucleoside linkages have advantageous properties such as enhanced cellular uptake, enhanced affinity for target nucleic acids, and increased stability in the presence of nucleases.
- modified internucleoside linkages include phosphorothioate internucleoside linkages.
- a phosphorothioate internucleoside linkage refers to a linkage between nucleosides in which the phosphodiester bond is modified by replacing one of the non-bridging oxygen atoms with a sulfur atom.
- the modified oligonucleotides of the present invention can have a gapmer structure to achieve increased resistance to nuclease degradation, increased cellular uptake, increased binding affinity for target nucleic acids, and/or increased MRLN expression inhibitory activity.
- a gapmer structure refers to a structure in which an internal region having multiple nucleosides that supports RNase H cleavage is located between external regions having one or more nucleosides.
- the internal region can be referred to as a "gap segment.”
- the external region can be referred to as a "wing segment.”
- the wing segment located 5' from the gap segment can be referred to as a "5' wing segment.”
- the wing segment located 3' from the gap segment can be referred to as a "3' wing segment.”
- the sugar moieties of all nucleosides in the wing segment are modified sugars.
- the sugar moieties of the nucleosides adjacent to the wing segment are sugar moieties of natural DNA.
- the sugar moieties of nucleosides in the gap segment that are not adjacent to the wing segments may consist solely of natural DNA sugar moieties or may contain one or more modified sugars.
- the modified oligonucleotides of the present invention may exist in the form of their pharmaceutically acceptable salts.
- Pharmaceutically acceptable salts may be any salt that retains the desired biological activity of the modified oligonucleotides of the present invention without imparting any undesirable toxicological effects thereto, but salts formed with inorganic ions such as metal ions are preferred. Specific examples include sodium salts and potassium salts, with sodium salts being preferred.
- the modified oligonucleotides of the present invention may also exist in the form of ions.
- modified oligonucleotides or pharmaceutically acceptable salts thereof of the present invention can be synthesized by conventional methods, for example, by the phosphoramidite method using amidites that are commercially available or can be synthesized by known methods.
- the modified oligonucleotide or pharmaceutically acceptable salt thereof of the present invention may be conjugated to a conjugate group at one or more locations.
- conjugate groups include proteins having affinity for biological molecules such as fatty acids, cholesterol, carbohydrates, phospholipids, and antibodies, as well as biotin, phenazine, vitamins, peptides, folates, phenanthridine, anthraquinone, acridine, fluorescein, rhodamine, coumarin, and dyes.
- the conjugated modified oligonucleotides are produced by known methods, and those that enhance their activity, tissue distribution, cellular distribution, or cellular uptake can be selected.
- the conjugate group may be bound directly to the modified oligonucleotide or via a linker.
- the method for evaluating the compound of the present invention may be any method that can verify the suppression of the expression level of MRLN in cells by the compound of the present invention. Specifically, for example, the following in vitro and in vivo MRLN expression measurement methods can be used.
- MRLN-expressing cells any cells that express MRLN (hereinafter sometimes referred to as "MRLN-expressing cells"), such as RD cells (human rhabdomyosarcoma cells).
- the intracellular mRNA level of MRLN can be assayed using various methods known in the art, including, for example, Northern blot analysis, competitive polymerase chain reaction (PCR), or quantitative real-time PCR.
- PCR competitive polymerase chain reaction
- Intracellular protein levels of MRLN can be assayed using a variety of methods known in the art, including, for example, immunoprecipitation, Western blot analysis (immunoblotting), enzyme-linked immunosorbent assay (ELISA), quantitative protein assay, protein activity assay (e.g., caspase activity assay), immunohistochemistry, immunocytochemistry, or fluorescence-activated cell sorting (FACS).
- immunoprecipitation Western blot analysis (immunoblotting), enzyme-linked immunosorbent assay (ELISA), quantitative protein assay, protein activity assay (e.g., caspase activity assay), immunohistochemistry, immunocytochemistry, or fluorescence-activated cell sorting (FACS).
- An in vivo MRLN expression measurement method for evaluating the suppression of MRLN expression in cells by a compound of the present invention involves, for example, administering a compound of the present invention to an animal that expresses MRLN and analyzing the MRLN expression level in the cells.
- composition containing a modified oligonucleotide or a pharmaceutically acceptable salt thereof or a pharmaceutically acceptable salt thereof can be used as a pharmaceutical composition.
- the modified oligonucleotide of the present invention conjugated with a conjugate group or a pharmaceutically acceptable salt thereof can be used as a pharmaceutical composition.
- the pharmaceutical composition may further contain a pharmaceutically acceptable carrier. That is, the pharmaceutical composition may contain the modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof and a pharmaceutically acceptable carrier.
- Pharmaceutically acceptable carriers are selected appropriately depending on the dosage form of the pharmaceutical composition, but include, for example, excipients, lubricants, binders, and disintegrants in solid preparations, and solvents, solubilizers, suspending agents, isotonicity agents, buffers, and soothing agents in liquid preparations. Furthermore, conventional additives such as preservatives, antioxidants, colorants, sweeteners, adsorbents, and wetting agents can also be used as needed in appropriate amounts.
- Dosage forms of pharmaceutical compositions for parenteral administration include injectable preparations (e.g., drip infusions, intravenous injections, intramuscular injections, subcutaneous injections, intradermal injections, intracerebral administration preparations, and intraspinal administration preparations), topical preparations (e.g., ointments, poultices, lotions), suppositories, inhalants, eye preparations, eye ointments, nasal drops, ear drops, and liposomes.
- injectable preparations e.g., drip infusions, intravenous injections, intramuscular injections, subcutaneous injections, intradermal injections, intracerebral administration preparations, and intraspinal administration preparations
- topical preparations e.g., ointments, poultices, lotions
- suppositories e.g., inhalants, eye preparations, eye ointments, nasal drops, ear drops, and liposomes
- an injectable formulation can be prepared by dissolving the modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof in a sterile aqueous solution.
- sterile aqueous solutions include sterile saline, sterile water, and sterile phosphate-buffered saline.
- solubilizers, buffers, pH adjusters, isotonicity agents, soothing agents, preservatives, stabilizers, etc. can be added as needed. It can also be made into a lyophilized formulation for preparation immediately before use.
- Dosage forms for oral administration of pharmaceutical compositions include solid or liquid dosage forms, specifically tablets, coated tablets, pills, fine granules, granules, powders, capsules, syrups, emulsions, suspensions, injections, and lozenges. Methods for preparing dosage forms for oral administration are well known to those skilled in the art.
- the modified oligonucleotides of the present invention or pharmaceutically acceptable salts thereof, or pharmaceutical compositions containing them can be used for the treatment or prevention of muscle diseases. It has been reported that suppressing the expression level of MRLN in muscle diseases increases calcium uptake in the sarcoplasmic reticulum, thereby reducing the amount of calcium in the cytoplasm and increasing muscle contractility. Therefore, the modified oligonucleotides of the present invention or pharmaceutically acceptable salts thereof, or pharmaceutical compositions containing them, are effective in treating or preventing muscle disorders caused by abnormal calcium influx into the cytoplasm, muscle cell death, and/or muscle contractility reduction.
- modified oligonucleotides or pharmaceutically acceptable salts thereof, or pharmaceutical compositions containing them, of the present invention reduce the amount of calcium in the cytoplasm and increase calcium uptake into the sarcoplasmic reticulum, thereby preventing muscle damage and muscle cell death in muscular dystrophies and/or maintaining or restoring muscle contractility.
- the dosage of the modified oligonucleotide or pharmaceutically acceptable salt thereof of the present invention, or a pharmaceutical composition containing the same can be systemically administered, for example, orally, intravenously, or intra-arterially.
- the dosage of the modified oligonucleotide or pharmaceutically acceptable salt thereof of the present invention, or a pharmaceutical composition containing the same can be varied as appropriate depending on the purpose of use, severity of the disease, and the age, weight, and sex of the patient, but can be, for example, 0.1 ng to 100 mg/kg/day of the modified oligonucleotide.
- Example 1 Preparation of Modified Oligonucleotides
- Modified oligonucleotides were synthesized and purified by Nippon Gene Co., Ltd./Nippon Gene Material Co., Ltd. using ALNA[Ms] amidite (synthesized by the method described in International Publication WO 2020/100826) according to a general solid-phase synthesis method for oligonucleotides.
- the compounds were identified using a high-performance liquid chromatograph mass spectrometer.
- the synthesized modified oligonucleotide compounds are shown in Tables 1-1 to 1-6 (16-residue modified oligonucleotides). Each nucleoside is represented by a single letter, and the internucleoside bond is a phosphorothioate bond.
- the mature target start position indicates the MRLN mRNA 5' target site of the modified oligonucleotide (the position of SEQ ID NO: 2 in the Sequence Listing corresponding to the 3' end of the modified oligonucleotide), and the mature target end position indicates the MRLN mRNA 3' target site of the modified oligonucleotide (the position of SEQ ID NO: 2 in the Sequence Listing corresponding to the 5' end of the modified oligonucleotide).
- Example 2 In vitro MRLN expression ratio test (Lipofection method) The modified oligonucleotides synthesized in Example 1 were mixed with lipofection reagent and added to a 384-well plate at 5 ⁇ L/well. RD cells suspended in 10% serum-containing medium were seeded on top of the mixture at 5 x 10 3 cells/45 ⁇ L/well and cultured in a CO 2 incubator. After 48 hours, the modified oligonucleotide-containing medium was removed from the cells and washed with phosphate-buffered saline (PBS).
- PBS phosphate-buffered saline
- a SuperPrep Cell Lysis & RT Kit for qPCR (Toyobo) was used to prepare a cell lysate containing RNA, and an RT reaction was performed from the lysate to synthesize template cDNA.
- Real-time PCR was performed using this cDNA to quantify MRLN mRNA expression levels.
- the MRLN expression ratio was calculated as a percentage by comparing the MRLN mRNA level in cells to which the modified oligonucleotide was added at a final concentration of 100 nmol/L with the MRLN mRNA level in cells to which the modified oligonucleotide was not added, and is shown in Tables 1-1 to 1-6.
- Example 3 In vitro MRLN expression ratio test (Gymnosis method) RD cells suspended in 2% serum-containing medium were seeded at 5 x 10 cells/45 ⁇ L/well in a 384-well plate and cultured in a CO2 incubator. After 72 hours, the medium was replaced with the same medium, and the modified oligonucleotides synthesized in Example 1 were added at 5 ⁇ L/well, followed by culture in a CO2 incubator. After 72 hours, the modified oligonucleotide-containing medium was removed from the cells and washed with phosphate-buffered saline (PBS).
- PBS phosphate-buffered saline
- a SuperPrep Cell Lysis & RT Kit for qPCR (Toyobo) was used to prepare a cell lysate containing RNA, and an RT reaction was performed from the lysate to synthesize template cDNA.
- Real-time PCR was performed using this cDNA to quantify MRLN mRNA expression levels.
- the MRLN expression ratio was calculated as a percentage by comparing the MRLN mRNA level in cells to which the modified oligonucleotide was added at a final concentration of 1000 nmol/L with the MRLN mRNA level in cells to which the modified oligonucleotide was not added, and is shown in Tables 1-1 to 1-6.
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Abstract
Description
本発明は、動物におけるMyoregulin(MRLN)のpre-mRNAレベル、mRNAレベル及びタンパク質レベルのうち、少なくとも一つを低減するための化合物及び該化合物を含有する医薬組成物に関する。 The present invention relates to a compound for reducing at least one of the pre-mRNA level, mRNA level, and protein level of Myoregulin (MRLN) in an animal, and a pharmaceutical composition containing the compound.
Myoregulin(MRLN)は、Long noncoding RNAによってコードされ、骨格筋特異的に発現し、筋小胞体内カルシウム量を調節するマイクロペプチドとして発見された(非特許文献1)。デュシェンヌ型筋ジストロフィー(DMD)患者由来の細胞において、MRLNのmRNA発現量を抑制するMRLN siRNAを処理すると、筋小胞体内へのカルシウム取り込み量が増加したことが報告されている(特許文献1)。また、DMDのモデルマウス(mdxマウス)およびサルコグリカノパチーのモデルマウス(サルコグリカンβ(sarcoglycan β)ノックアウトマウス)に、それぞれMRLNアンチセンスオリゴヌクレオチドを投与し、MRLN遺伝子発現を低下させると、どちらのモデルマウスにおいても筋ジストロフィーの臨床指標であり、筋障害や筋細胞死によって漏出するクレアチンキナーゼが低下したことが報告されている(特許文献1)。サルコグリカノパチーとは、肢体型筋ジストロフィー(limb girdle muscular dystrophy: LGMD)2C~2F型の総称である。 Myoregulin (MRLN) is encoded by long noncoding RNA and is specifically expressed in skeletal muscle. It was discovered as a micropeptide that regulates calcium levels within the sarcoplasmic reticulum (Non-Patent Document 1). It has been reported that treatment of cells derived from Duchenne muscular dystrophy (DMD) patients with MRLN siRNA, which suppresses MRLN mRNA expression, increased calcium uptake into the sarcoplasmic reticulum (Patent Document 1). Furthermore, administration of MRLN antisense oligonucleotides to DMD model mice (mdx mice) and sarcoglycanopathy model mice (sarcoglycan β knockout mice) to reduce MRLN gene expression resulted in a decrease in creatine kinase levels, a clinical indicator of muscular dystrophy and caused by muscle damage and muscle cell death, in both model mice (Patent Document 1). Sarcoglycanopathy is a general term for limb girdle muscular dystrophy (LGMD) types 2C to 2F.
このように、MRLNの発現量を抑制すると、筋小胞体内へのカルシウム取り込み量を増加させることができるため、細胞質内へのカルシウム異常流入による筋障害や筋細胞死を伴うおよび/または筋収縮力低下を伴う、筋ジストロフィーなどの筋疾患の治療または予防に有効である。 In this way, suppressing the expression level of MRLN can increase the amount of calcium uptake into the sarcoplasmic reticulum, making it effective in treating or preventing muscle diseases such as muscular dystrophy, which are accompanied by muscle damage, muscle cell death, and/or decreased muscle contractility due to abnormal calcium influx into the cytoplasm.
このような状況の下、筋疾患治療のために、MRLNの発現量を抑制する優れたアンチセンスオリゴヌクレオチドが望まれている。これまでに報告されているMRLNアンチセンスオリゴヌクレオチドはマウスMRLN遺伝子の塩基配列をもとに設計されており(特許文献1)、ヒトの筋疾患患者への治療または予防のために臨床応用することは困難である。 Under these circumstances, there is a need for superior antisense oligonucleotides that suppress the expression level of MRLN for the treatment of muscle diseases. The MRLN antisense oligonucleotides reported to date were designed based on the base sequence of the mouse MRLN gene (Patent Document 1), making their clinical application for the treatment or prevention of human muscle disease patients difficult.
本発明は、MRLN発現を抑制するための化合物を提供する。 The present invention provides compounds for inhibiting MRLN expression.
本発明者らは鋭意検討を行い、MRLN発現を抑制する修飾オリゴヌクレオチドを見出し、本発明を完成させるに至った。 The inventors conducted extensive research and discovered modified oligonucleotides that suppress MRLN expression, leading to the completion of the present invention.
本発明は以下の態様を含む。
[1]Myoregulin発現を抑制する活性を有する、12~30個の連結したヌクレオシドからなる修飾オリゴヌクレオチド又はその医薬的に許容可能な塩であって、前記修飾オリゴヌクレオチドは配列表の配列番号1の塩基配列の5’末端から15~41位、62~108位、448~471位、649~666位、848~863位、1104~1119位、1232~1254位、1691~1719位、1735~1751位、2195~2211位、2289~2310位、2479~2512位、2616~2631位、2692~2716位、2751~2766位、2893~2909位、2979~2995位、3431~3447位、3564~3585位、3601~3617位、3721~3736位、4074~4089位、4127~4142位、4156~4171位、4277~4292位、4305~4322位、4500~4515位、4613~4628位、5039~5055位、5063~5079位、5103~5119位、5522~5540位、5727~5742位、5772~5803位、5998~6013位、6272~6288位、6695~6711位、6763~6778位、7224~7247位、8013~8028位、9844~9864位、14649~14665位、14903~14920位、14951~14995位、16113~16129位、16235~16254位、16256~16273位、16281~16306位、16316~16336位、16514~16536位、16578~16593位、16610~16637位または16724~16739位のいずれかの塩基配列におけるいずれかの8個以上の連続する塩基と100%相補的な塩基配列を含み、前記修飾オリゴヌクレオチドの全長の塩基配列が、配列表の配列番号1の塩基配列における等長部分に対して85%以上相補性を有する、修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[2]前記修飾オリゴヌクレオチドが、配列表の配列番号1の塩基配列の5’末端から1232~1254位、1691~1719位、1735~1751位、2195~2211位、2289~2308位、3431~3446位、4127~4142位、4156~4171位、4500~4515位、5522~5537位、5727~5742位、5772~5803位、5998~6013位、6272~6287位、6763~6778位、8013~8028位、9846~9864位、14963~14978位、16235~16254位、16256~16273位、16281~16306位または16316~16331位のいずれかの塩基配列におけるいずれかの8個以上の連続する塩基と100%相補的な塩基配列を含み、前記修飾オリゴヌクレオチドの全長の塩基配列が、配列表の配列番号1の塩基配列における等長部分に対して85%以上相補性を有する、[1]に記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[3]Myoregulin発現を抑制する活性を有する、12~30個の連結したヌクレオシドからなる修飾オリゴヌクレオチド又はその医薬的に許容可能な塩であって、前記修飾オリゴヌクレオチドは配列表の配列番号2の塩基配列の5’末端から15~41位、62~91位、100~129位、160~225位、227~244位、252~277位、287~307位、485~507位、549~564位、581~608位または695~710位のいずれかの塩基配列におけるいずれかの8個以上の連続する塩基と100%相補的な塩基配列を含み、前記修飾オリゴヌクレオチドの全長の塩基配列が、配列表の配列番号2の塩基配列における等長部分に対して85%以上相補性を有する、修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[4]前記修飾オリゴヌクレオチドが、配列表の配列番号2の塩基配列の5’末端から172~187位、201~225位、227~244位、252~277位または287~302位のいずれかの塩基配列におけるいずれかの8個以上の連続する塩基と100%相補的な塩基配列を含み、前記修飾オリゴヌクレオチドの全長の塩基配列が、配列表の配列番号2の塩基配列における等長部分に対して85%以上相補性を有する、[3]に記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[5]Myoregulin発現を抑制する活性を有する修飾オリゴヌクレオチド又はその医薬的に許容可能な塩であり、前記修飾オリゴヌクレオチドの塩基配列が、
CCAGAATTATCCCGCT(配列番号1の16238~16253位の相補配列)(配列表の配列番号275)、
TCCAGAATTATCCCGC(配列番号1の16239~16254位の相補配列)(配列表の配列番号276)、
AGTTTTTACCAGTCAT(配列番号1の16256~16271位の相補配列)(配列表の配列番号277)、
CCAGTTTTTACCAGTC(配列番号1の16258~16273位の相補配列)(配列表の配列番号278)、
GACTTTTGGGAGTAGT(配列番号1の16289~16304位の相補配列)(配列表の配列番号279)、
AGACTTTTGGGAGTAG(配列番号1の16290~16305位の相補配列)(配列表の配列番号229)および
GAAGTCTTCCCACAAT(配列番号1の16316~16331位の相補配列)(配列表の配列番号231)
からなる群より選択されるいずれかの塩基配列、または、該塩基配列を含む17もしくは18個の連続する塩基から構成される塩基配列であり、前記修飾オリゴヌクレオチドの全長の塩基配列が、配列番号1の塩基配列における等長部分に対して100%相補的な塩基配列からなる、修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[6]Myoregulin発現を抑制する活性を有する修飾オリゴヌクレオチド又はその医薬的に許容可能な塩であり、前記修飾オリゴヌクレオチドの塩基配列が、
TTATCCCGCTCCCTGA(配列番号2の203~218位の相補配列)(配列表の配列番号273)または
ATTATCCCGCTCCCTG(配列番号2の204~219位の相補配列)(配列表の配列番号280)
のいずれかの塩基配列、または、該塩基配列を含む17もしくは18個の連続する塩基から構成される塩基配列であり、前記修飾オリゴヌクレオチドの全長の塩基配列が、配列番号2の塩基配列における等長部分に対して100%相補的な塩基配列からなる、修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[7]前記修飾オリゴヌクレオチドが1本鎖である、[1]~[6]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[8]前記修飾オリゴヌクレオチドを構成する少なくとも1つのヌクレオシドが修飾糖を含む、[1]~[7]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[9]前記修飾糖が二環式糖である、[8]に記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[10]前記二環式糖が、LNA、ALNA[Ms]、ALNA[mU]、ALNA[ipU]、ALNA[Oxz]およびALNA[Trz]の糖部分からなる群から選択される、
[9]に記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[11]前記二環式糖がALNA[Ms]の糖部分である、[9]または[10]に記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[12]前記修飾糖が、置換糖である、[8]に記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[13]前記修飾オリゴヌクレオチドを構成する少なくとも1つのヌクレオシドが修飾塩基を含む、[1]~[12]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[14]前記修飾塩基が、5-メチルシトシンである、[13]に記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[15]前記修飾オリゴヌクレオチドを構成する少なくとも1つのヌクレオシド間結合が修飾ヌクレオシド間結合である、[1]~[14]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[16]前記修飾ヌクレオシド間結合がホスホロチオエートヌクレオシド間結合である、
[15]に記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[17]前記修飾オリゴヌクレオチドが、
1)ギャップセグメント、
2)5’ウイングセグメント及び
3)3’ウイングセグメント、を含み、
前記ギャップセグメントが、前記5’ウイングセグメントと前記3’ウイングセグメントとの間に位置付けられ、
前記5’ウイングセグメント及び3’ウイングセグメントを構成するヌクレオシドの糖部分が全て修飾糖である、[1]~[16]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。
[18][1]~[17]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩を含む医薬組成物。
[19]筋疾患の治療または予防のための、[18]に記載の医薬組成物。
[20]前記筋疾患が、筋ジストロフィー、封入体筋炎、筋委縮性側索硬化症、廃用性筋萎縮およびサルコペニアからなる群から選択される、[19]に記載の医薬組成物。
[21]前記筋疾患が、筋ジストロフィーである、[20]に記載の医薬組成物。
[22]前記筋ジストロフィーが、デュシェンヌ型筋ジストロフィー、ベッカー型筋ジストロフィー、およびサルコグリカノパチーからなる群から選択される、[21]に記載の医薬組成物。
[23]前記筋疾患が、デュシェンヌ型筋ジストロフィーである、[19]に記載の医薬組成物。
[24]前記筋疾患が、ベッカー型筋ジストロフィーである、[19]に記載の医薬組成物。
[25]前記筋疾患が、サルコグリカノパチーである、[19]に記載の医薬組成物。
[26][1]~[17]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩の有効量を対象に投与することを工程に含む、筋疾患の治療または予防方法。
[27]筋疾患の治療または予防のための、[1]~[17]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩の使用。
[28]筋疾患の治療または予防のための医薬組成物の製造における、[1]~[17]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩の使用。
[29]筋疾患の治療または予防のための医薬組成物の製造に使用するための、[1]~[17]のいずれかに記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩
The present invention includes the following aspects.
[1] A modified oligonucleotide consisting of 12 to 30 linked nucleosides or a pharmaceutically acceptable salt thereof, which has an activity of inhibiting Myoregulin expression, wherein the modified oligonucleotide is located at positions 15 to 41, 62 to 108, 448 to 471, 649 to 666, 848 to 863, 1104 to 1119, 1232 to 1254, 1691 to 1719, 1735 to 1751, 2195 to 2211, 3195 to 3211, 3215 to 3215, 3216 to 3217, 3218 to 3219, 3220 to 3221, 3222 to 3222, 3223 to 3224, 3225 to 3225, 3226 to 3227, 3228 to 3229, 3230 to 3231, 3232 to 3232, 3233 to 3234, 3235 to 3235, 3236 to 3237, 3238 to 3239, 3240 to 3241, 3242 to 3243, 3244 to 3245, 3246 to 3248, 3248 to 3249, 3249 to 3251, 3249 to 3252, 3249 to 3253, 3249 to 3254, 3255 to 3255, 3256 to 3256, 3257 to 3258, 3259 to 3261, 325 2289-2310, 2479-2512, 2616-2631, 2692-2716, 2751-2766, 2893-2909, 2979-2995, 3431-3447, 3564-3585, 3601-3 617th, 3721-3736, 4074-4089, 4127-4142, 4156-4171, 4277-4292, 4305-4322, 4500-4515, 4613-4628, 5039-5055, 50 63-5079th, 5103-5119, 5522-5540, 5727-5742, 5772-5803, 5998-6013, 6272-6288, 6695-6711, 6763-6778, 7224-724 7th, 8013-8028, 9844-9864, 14649-14665, 14903-14920, 14951-14995, 16113-16129, 16235-16254, 16256-16273, 162 A modified oligonucleotide or a pharmaceutically acceptable salt thereof, comprising a base sequence that is 100% complementary to any 8 or more consecutive bases in any of the base sequences at positions 81 to 16306, 16316 to 16336, 16514 to 16536, 16578 to 16593, 16610 to 16637, or 16724 to 16739, and the full-length base sequence of the modified oligonucleotide is 85% or more complementary to an equal-length portion of the base sequence of SEQ ID NO: 1 in the Sequence Listing.
[2] The modified oligonucleotide is selected from the group consisting of positions 1232 to 1254, 1691 to 1719, 1735 to 1751, 2195 to 2211, 2289 to 2308, 3431 to 3446, 4127 to 4142, 4156 to 4171, 4500 to 4515, 5522 to 5537, 5727 to 5742, 5772 to 5803, 5998 to 6013, 6272 to 6287, 6763 to 6778, 8013 to 8028, 98 The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to [1], comprising a base sequence that is 100% complementary to any 8 or more consecutive bases in any of the base sequences at positions 46 to 9864, 14963 to 14978, 16235 to 16254, 16256 to 16273, 16281 to 16306, or 16316 to 16331, and the full-length base sequence of the modified oligonucleotide is 85% or more complementary to an equal-length portion of the base sequence of SEQ ID NO: 1 in the Sequence Listing.
[3] A modified oligonucleotide consisting of 12 to 30 linked nucleosides, or a pharmaceutically acceptable salt thereof, which has activity of inhibiting Myoregulin expression, wherein the modified oligonucleotide comprises a base sequence that is 100% complementary to any 8 or more consecutive bases in any of the base sequences at positions 15 to 41, 62 to 91, 100 to 129, 160 to 225, 227 to 244, 252 to 277, 287 to 307, 485 to 507, 549 to 564, 581 to 608, or 695 to 710 from the 5' end of the base sequence of SEQ ID NO: 2 in the Sequence Listing, and the full-length base sequence of the modified oligonucleotide is 85% or more complementary to an equal-length portion of the base sequence of SEQ ID NO: 2 in the Sequence Listing.
[4] The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to [3], wherein the modified oligonucleotide comprises a base sequence that is 100% complementary to any 8 or more consecutive bases in any of the base sequences at positions 172 to 187, 201 to 225, 227 to 244, 252 to 277, or 287 to 302 from the 5' end of the base sequence of SEQ ID NO: 2 in the Sequence Listing, and the full-length base sequence of the modified oligonucleotide is 85% or more complementary to the equal-length portion of the base sequence of SEQ ID NO: 2 in the Sequence Listing.
[5] A modified oligonucleotide or a pharmaceutically acceptable salt thereof having an activity of suppressing Myoregulin expression, wherein the base sequence of the modified oligonucleotide is
CCAGAATTATCCCGCT (complementary sequence of positions 16238 to 16253 of SEQ ID NO: 1) (SEQ ID NO: 275 in the Sequence Listing),
TCCAGAATTATCCCGC (complementary sequence of positions 16239 to 16254 of SEQ ID NO: 1) (SEQ ID NO: 276 in the Sequence Listing),
AGTTTTTACCAGTCAT (complementary sequence of positions 16256 to 16271 of SEQ ID NO: 1) (SEQ ID NO: 277 in the Sequence Listing),
CCAGTTTTACCAGTC (complementary sequence of positions 16258 to 16273 of SEQ ID NO: 1) (SEQ ID NO: 278 in the Sequence Listing),
GACTTTTTGGGAGTAGT (complementary sequence of positions 16289 to 16304 of SEQ ID NO: 1) (SEQ ID NO: 279 in the Sequence Listing),
AGACTTTTTGGGAGTAG (complementary sequence of positions 16290 to 16305 of SEQ ID NO: 1) (SEQ ID NO: 229 in the Sequence Listing) and GAAGTCTTCCCCACAAT (complementary sequence of positions 16316 to 16331 of SEQ ID NO: 1) (SEQ ID NO: 231 in the Sequence Listing)
A modified oligonucleotide or a pharmaceutically acceptable salt thereof, which is a base sequence selected from the group consisting of: or a base sequence consisting of 17 or 18 consecutive bases including said base sequence, and the full-length base sequence of the modified oligonucleotide is a base sequence that is 100% complementary to the isotopic portion of the base sequence of SEQ ID NO: 1.
[6] A modified oligonucleotide or a pharmaceutically acceptable salt thereof having an activity of suppressing Myoregulin expression, wherein the base sequence of the modified oligonucleotide is
TTATCCCGCTCCCTGA (complementary sequence of positions 203 to 218 of SEQ ID NO: 2) (SEQ ID NO: 273 in the Sequence Listing) or ATTATCCCGCTCCCTG (complementary sequence of positions 204 to 219 of SEQ ID NO: 2) (SEQ ID NO: 280 in the Sequence Listing)
A modified oligonucleotide or a pharmaceutically acceptable salt thereof, which is any of the base sequences shown below, or a base sequence consisting of 17 or 18 consecutive bases including said base sequence, and wherein the full-length base sequence of the modified oligonucleotide is a base sequence that is 100% complementary to the equal-length portion of the base sequence of SEQ ID NO: 2.
[7] The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to any one of [1] to [6], wherein the modified oligonucleotide is single-stranded.
[8] The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to any one of [1] to [7], wherein at least one nucleoside constituting the modified oligonucleotide contains a modified sugar.
[9] The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to [8], wherein the modified sugar is a bicyclic sugar.
[10] The bicyclic sugar is selected from the group consisting of LNA, ALNA[Ms], ALNA[mU], ALNA[ipU], ALNA[Oxz], and ALNA[Trz] sugar moieties.
The modified oligonucleotide according to [9] or a pharmaceutically acceptable salt thereof.
[11] The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to [9] or [10], wherein the bicyclic sugar is the sugar moiety of ALNA[Ms].
[12] The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to [8], wherein the modified sugar is a substituted sugar.
[13] The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to any one of [1] to [12], wherein at least one nucleoside constituting the modified oligonucleotide contains a modified base.
[14] The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to [13], wherein the modified base is 5-methylcytosine.
[15] The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to any one of [1] to [14], wherein at least one internucleoside bond constituting the modified oligonucleotide is a modified internucleoside bond.
[16] The modified internucleoside bond is a phosphorothioate internucleoside bond.
The modified oligonucleotide according to [15] or a pharmaceutically acceptable salt thereof.
[17] The modified oligonucleotide,
1) gap segments,
2) a 5' wing segment and 3) a 3' wing segment;
the gap segment is positioned between the 5' wing segment and the 3' wing segment;
The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to any one of [1] to [16], wherein all of the sugar moieties of the nucleosides constituting the 5' wing segment and the 3' wing segment are modified sugars.
[18] A pharmaceutical composition comprising the modified oligonucleotide according to any one of [1] to [17] or a pharmaceutically acceptable salt thereof.
[19] The pharmaceutical composition according to [18] for treating or preventing a muscle disease.
[20] The pharmaceutical composition described in [19], wherein the muscle disease is selected from the group consisting of muscular dystrophy, inclusion body myositis, amyotrophic lateral sclerosis, disuse muscle atrophy, and sarcopenia.
[21] The pharmaceutical composition according to [20], wherein the muscle disease is muscular dystrophy.
[22] The pharmaceutical composition according to [21], wherein the muscular dystrophy is selected from the group consisting of Duchenne muscular dystrophy, Becker muscular dystrophy, and sarcoglycanopathy.
[23] The pharmaceutical composition described in [19], wherein the muscle disease is Duchenne muscular dystrophy.
[24] The pharmaceutical composition described in [19], wherein the muscle disease is Becker muscular dystrophy.
[25] The pharmaceutical composition described in [19], wherein the muscle disease is sarcoglycanopathy.
[26] A method for treating or preventing a muscular disease, comprising administering to a subject an effective amount of the modified oligonucleotide according to any one of [1] to [17] or a pharmaceutically acceptable salt thereof.
[27] Use of the modified oligonucleotide according to any one of [1] to [17] or a pharmaceutically acceptable salt thereof for the treatment or prevention of a muscular disease.
[28] Use of the modified oligonucleotide according to any one of [1] to [17] or a pharmaceutically acceptable salt thereof in the manufacture of a pharmaceutical composition for treating or preventing a muscular disease.
[29] The modified oligonucleotide according to any one of [1] to [17] or a pharmaceutically acceptable salt thereof for use in producing a pharmaceutical composition for treating or preventing a muscular disease.
本発明の修飾オリゴヌクレオチドは、MRLN発現に対する優れた抑制活性を有する。 The modified oligonucleotides of the present invention have excellent inhibitory activity against MRLN expression.
前述の概要及び以下の詳細な説明の両方とも例示的且つ説明的なものに過ぎず、請求される本発明を制限するものではないことを理解されたい。本明細書では、別段の記載がない限り、単数形の使用は複数形を含む。本明細書では、用語「含むこと(including)」並びに他の形態、例えば「含む(includes)」及び「含まれる(included)」の使用は、限定的なものではない。 It is to be understood that both the foregoing general description and the following detailed description are exemplary and explanatory only and are not restrictive of the invention as claimed. As used herein, the use of the singular includes the plural unless expressly stated otherwise. As used herein, the use of the term "including" as well as other forms such as "includes" and "included" is not limiting.
本明細書で使用されるセクションの見出しは、構成上の目的のためだけであり、記載される主題を制限するものとして解釈されるべきでない。これらに限定されないが、特許、特許出願、記事、書籍及び論文を含めた、本出願で引用されるすべての文書又は文書の一部分は、本明細書で論じる文書の一部分に関して、及びその全体が、参照により本明細書に明確に組み込まれる。 The section headings used herein are for organizational purposes only and should not be construed as limiting the subject matter described. All documents or portions of documents cited in this application, including, but not limited to, patents, patent applications, articles, books, and treatises, are expressly incorporated herein by reference in their entirety and with respect to the portions of the documents discussed herein.
(定義)
具体的な定義が与えられない限り、本明細書に記載の分析化学、有機合成化学、並びに医化学及び薬化学に関連して利用される命名法、及びそれらの手順及び技法は、当技術分野で周知であり、一般に使用されるものである。標準的な技法を、本明細書中で使用する化学合成及び化学分析に使用することができる。許容される場合、本明細書の開示の全体を通して言及される、すべての特許、出願、公開出願及び他の刊行物、国立バイオテクノロジー情報センター(NCBI)などのデータベースを通して入手可能なGenBank受託番号及び関連する配列情報並びに他のデータは、本明細書に論じる文書の一部分に関して、及びその全体が、参照により組み込まれる。
また、本明細書は、電子フォーマットの配列表と共に出願するが、当該電子フォーマット中に記載する配列表の情報は、参照によりその全体が本明細書中に組み込まれる。
(definition)
Unless specific definitions are provided, the nomenclature utilized in connection with, and the procedures and techniques of, analytical chemistry, organic synthetic chemistry, and medicinal and pharmaceutical chemistry described herein are those well known and commonly used in the art. Standard techniques can be used for the chemical syntheses and chemical analyses used herein. Where permitted, all patents, applications, published applications, and other publications referred to throughout this disclosure, GenBank accession numbers and associated sequence information and other data available through databases such as the National Center for Biotechnology Information (NCBI), are incorporated by reference in their entirety and with respect to portions of the documents discussed herein.
This specification is also filed together with a Sequence Listing in electronic format, the information in the Sequence Listing set forth in said electronic format being incorporated herein by reference in its entirety.
別段の指示がない限り、以下の用語は以下の意味を有する。 Unless otherwise specified, the following terms have the following meanings:
「塩基」は、別の核酸の塩基と対形成することができる複素環部分を意味する。 "Base" means a heterocyclic moiety capable of pairing with a base of another nucleic acid.
「連続する塩基」は、互いに隣接する塩基を意味する。 "Contiguous bases" means bases that are adjacent to each other.
「塩基配列」は、連続的な塩基の順序を意味する。 "Base sequence" means the order of consecutive bases.
「ヌクレオシド」は、糖と塩基が連結した分子を意味する。 "Nucleoside" refers to a molecule consisting of a sugar and a base.
「連結したヌクレオシド」は、連続した配列においてヌクレオシド間結合によって連結されるヌクレオシドを意味する。 "Linked nucleosides" means nucleosides that are linked by internucleoside linkages in a contiguous sequence.
「ヌクレオチド」は、ヌクレオシドの糖部分にリン酸基が結合した分子を意味する。天然に存在するヌクレオチドは糖部分がリボース又はデオキシリボースである。 "Nucleotide" refers to a molecule in which a phosphate group is attached to the sugar portion of a nucleoside. Naturally occurring nucleotides have a ribose or deoxyribose sugar portion.
「オリゴヌクレオチド」は、各ヌクレオシドが、ヌクレオシド間結合によって連結したヌクレオシドのポリマーを意味する。 "Oligonucleotide" means a polymer of nucleosides in which each nucleoside is linked by an internucleoside bond.
「ヌクレオシド間結合」は、ヌクレオシド間の化学結合を指す。 "Internucleoside bond" refers to the chemical bond between nucleosides.
「修飾ヌクレオシド間結合」は、天然に存在するヌクレオシド間結合(すなわち、ホスホジエステルヌクレオシド間結合)からの置換又は任意の変化を指す。例えば、ホスホロチオエートヌクレオシド間結合があるが、これに限定されない。 "Modified internucleoside linkage" refers to a substitution or any change from a naturally occurring internucleoside linkage (i.e., a phosphodiester internucleoside linkage). For example, but not limited to, a phosphorothioate internucleoside linkage.
「修飾塩基」は、アデニン、シトシン、グアニン、チミジン又はウラシル以外の任意の塩基を指す。例えば、5-メチルシトシンがあるが、これに限定されない。 "Modified base" refers to any base other than adenine, cytosine, guanine, thymidine, or uracil. For example, but not limited to, 5-methylcytosine.
「修飾ヌクレオシド」は、独立に、修飾糖または修飾塩基を有するヌクレオシドを意味する。 "Modified nucleoside" means a nucleoside having, independently, a modified sugar or modified base.
「修飾オリゴヌクレオチド」は、少なくとも1つの修飾ヌクレオシド及び/又は修飾ヌクレオシド間結合を含むオリゴヌクレオチドを意味する。 "Modified oligonucleotide" means an oligonucleotide containing at least one modified nucleoside and/or modified internucleoside linkage.
「糖」または「糖部分」は、天然糖部分または修飾糖部分を意味する。 "Sugar" or "sugar moiety" means a natural sugar moiety or a modified sugar moiety.
「修飾糖」は、天然糖からの置換又は変化を意味する。修飾糖としては、例えば、置換糖または二環式糖が挙げられる。 "Modified sugar" refers to a substitution or change from a natural sugar. Modified sugars include, for example, substituted sugars or bicyclic sugars.
「置換糖」は、RNAまたはDNAの天然糖以外のフラノシルを意味する。但し、二環式糖を含まない。 "Substituted sugar" means a furanosyl sugar other than the natural sugars of RNA or DNA, but does not include bicyclic sugars.
「二環式糖」は、フラノシル環を形成する4つの炭素原子のうち、2つの異なる炭素原子の架橋によって修飾されるフラノシルを意味する。 "Bicyclic sugar" means a furanosyl modified by bridging two different carbon atoms among the four carbon atoms forming the furanosyl ring.
「1本鎖オリゴヌクレオチド」は、相補鎖とハイブリダイズしていないオリゴヌクレオチドを意味する。 "Single-stranded oligonucleotide" means an oligonucleotide that is not hybridized to a complementary strand.
「等長部分」とは、第一の核酸の塩基配列の長さと等しい長さを有する、第二の核酸の塩基配列における部分を言う。ある種の実施態様では、第一の核酸は修飾オリゴヌクレオチドで、第二の核酸はMRLN pre-mRNAまたはMRLN mRNAである。 "Isometric portion" refers to a portion of the base sequence of a second nucleic acid that has a length equal to the length of the base sequence of a first nucleic acid. In certain embodiments, the first nucleic acid is a modified oligonucleotide and the second nucleic acid is MRLN pre-mRNA or MRLN mRNA.
「相補的(相補性)」は、第一の核酸と第二の核酸の塩基間の対形成に対する能力を意味する。ある種の実施態様では、アデニンはチミジン又はウラシルと相補的である。ある種の実施態様では、シトシンはグアニンと相補的である。ある種の実施態様では5-メチルシトシンは、グアニンと相補的である。 "Complementary" refers to the capacity for pairing between the bases of a first nucleic acid and a second nucleic acid. In certain embodiments, adenine is complementary to thymidine or uracil. In certain embodiments, cytosine is complementary to guanine. In certain embodiments, 5-methylcytosine is complementary to guanine.
「100%相補的(100%相補性ともいう)」は、第一の核酸の塩基配列が完全に第二の核酸の塩基配列と相補的であることを意味する。ある種の実施態様では、第一の核酸は修飾オリゴヌクレオチドであり、標的核酸が第二の核酸である。 "100% complementary" (also referred to as 100% complementarity) means that the base sequence of a first nucleic acid is completely complementary to the base sequence of a second nucleic acid. In certain embodiments, the first nucleic acid is a modified oligonucleotide and the target nucleic acid is the second nucleic acid.
「ミスマッチ」は、第一の核酸の塩基が、第二の核酸又は標的核酸の対応する塩基と対形成できない場合を指す。 "Mismatch" refers to a case where a base in a first nucleic acid cannot pair with the corresponding base in a second nucleic acid or target nucleic acid.
「標的核酸」、「標的RNA」及び「標的RNA転写産物」はそれぞれ、修飾オリゴヌクレオチドが標的とすることができる核酸、RNA、RNA転写産物を指す。ある種の実施態様では、標的核酸はMRLN mRNA又はMRLN pre-mRNAの領域を含む。 "Target nucleic acid," "target RNA," and "target RNA transcript" refer to a nucleic acid, RNA, and RNA transcript, respectively, that can be targeted by a modified oligonucleotide. In certain embodiments, the target nucleic acid comprises a region of MRLN mRNA or MRLN pre-mRNA.
「医薬的に許容可能な塩」は、本発明の修飾オリゴヌクレオチドの生理学的及び医薬的に許容可能な塩を意味し、ホスホロチオエート、もしくはホスホジエステル上、又は修飾塩基内の官能基(例えば、アミノ基)上で、金属イオンなどの無機物イオンと形成される塩があげられる。 "Pharmaceutically acceptable salt" means a physiologically and pharmaceutically acceptable salt of the modified oligonucleotide of the present invention, including salts formed with inorganic ions such as metal ions on the phosphorothioate or phosphodiester, or on functional groups (e.g., amino groups) in the modified base.
「改善」は、関連する疾患、障害又は状態の少なくとも1つの指標、徴候又は症状を減らすことを指す。指標の重度は、当業者に既知の主観的又は客観的尺度によって決定することができる。 "Amelioration" refers to a reduction in at least one indicator, sign, or symptom of the associated disease, disorder, or condition. The severity of the indicator can be determined by subjective or objective measures known to those skilled in the art.
「動物」は、ヒト、又はこれらに限定されないが、マウス、ラット、ウサギ、イヌ、ネコ、ブタを含めた非ヒト動物、並びにこれらに限定されないが、サル及びチンパンジーを含めた非ヒト霊長類を指す。 "Animal" refers to humans or non-human animals, including, but not limited to, mice, rats, rabbits, dogs, cats, and pigs, and non-human primates, including, but not limited to, monkeys and chimpanzees.
「有効量」は、薬剤を必要としている個体において所望の生理的転帰を実現するのに十分である、本発明の修飾オリゴヌクレオチドの量を意味する。有効量は、処置される個体の健康及び身体状態、処置される個体の分類群、組成物の製剤、個体の医学的状態の評価並びに他の関連する因子に応じて、個体の間で変動し得る。 "Effective amount" refers to an amount of a modified oligonucleotide of the present invention that is sufficient to achieve a desired physiological outcome in an individual in need of the drug. The effective amount may vary from individual to individual, depending on the health and physical condition of the individual being treated, the taxonomic group of the individual being treated, the formulation of the composition, an evaluation of the individual's medical condition, and other relevant factors.
「個体」は、処置又は療法について選択されたヒト又は非ヒト動物を意味する。 "Individual" means a human or non-human animal selected for treatment or therapy.
「予防する」は、数分から無期限の期間にわたって、疾患、障害もしくは好ましくない健康状態、又は当該疾患、障害もしくは好ましくない健康状態に関連する1つ以上の症状の発症又は発生を遅延させるか又は未然に防ぐことを意味する。予防するは、疾患、障害又は好ましくない健康状態を発生する危険性を低減させることも意味する。 "Prevent" means to delay or forestall the onset or occurrence of a disease, disorder, or adverse health condition, or one or more symptoms associated with that disease, disorder, or adverse health condition, for a period ranging from a few minutes to an indefinite period. Prevent also means to reduce the risk of developing a disease, disorder, or adverse health condition.
「治療する」は、疾患、障害もしくは好ましくない健康状態、又は当該疾患、障害もしくは好ましくない健康状態に関連する1つ以上の症状、を軽減するか、もしくは排除するか、又は、当該疾患、障害、もしくは好ましくない健康状態自体の1つもしくはそれ以上の原因を部分的に解消するか又は根絶することを意味する。 "Treating" means alleviating or eliminating a disease, disorder or adverse health condition, or one or more symptoms associated with that disease, disorder or adverse health condition, or partially eliminating or eradicating one or more causes of the disease, disorder or adverse health condition itself.
(具体的実施態様)
すなわち、MRLNの発現を抑制するための化合物、該化合物を用いる方法、及び該化合物を含有する医薬組成物を提供する。
(Specific embodiment)
That is, the present invention provides compounds for suppressing the expression of MRLN, methods for using the compounds, and pharmaceutical compositions containing the compounds.
(1)修飾オリゴヌクレオチド
本発明の修飾オリゴヌクレオチド(以下、「本発明化合物」又は「本発明修飾オリゴヌクレオチド」と称することがある)は、MRLN発現を抑制する活性を有する修飾オリゴヌクレオチドである。本発明におけるMRLN発現(レベル)の抑制とは、MRLN遺伝子から転写されたpre-mRNAレベル、pre-mRNAからスプライシングを受けたmRNAレベル及びmRNAから翻訳されたMRLNタンパク質レベル(これらをまとめて「MRLN発現レベル」と称することがある)のうち、少なくとも1つを抑制することを意味する。MRLN pre-mRNAは、特に制限されず、配列バリエーションを含むものであってもよいが、例えば、GenBank受託番号NC_000010.11:c59753455-59736692に記載の配列(配列表の配列番号1)で示されるものが挙げられる。また、MRLN mRNAは、特に制限されず、配列バリエーションを含むものであってもよいが、例えば、GenBank受託番号NM_001304731.2に記載の配列(配列表の配列番号2)で示されるものがあげられる。なお、RNA配列は、配列番号1においてTをUに読み替えるものとする。また、MRLNのmRNAやpre-mRNAは、各種スプライシングバリアント、一塩基置換体(SNP)などの配列バリアントを含むものであってもよい。
(1) Modified Oligonucleotides The modified oligonucleotides of the present invention (hereinafter sometimes referred to as "compounds of the present invention" or "modified oligonucleotides of the present invention") are modified oligonucleotides having the activity of suppressing MRLN expression. In the present invention, suppression of MRLN expression (level) means suppression of at least one of the pre-mRNA level transcribed from the MRLN gene, the mRNA level spliced from the pre-mRNA, and the MRLN protein level translated from the mRNA (these levels may be collectively referred to as "MRLN expression level"). The MRLN pre-mRNA is not particularly limited and may include sequence variations, but examples include the sequence shown in GenBank Accession No. NC_000010.11:c59753455-59736692 (SEQ ID NO: 1 in the Sequence Listing). Furthermore, the MRLN mRNA is not particularly limited and may include sequence variations, such as the sequence set forth in GenBank Accession No. NM_001304731.2 (SEQ ID NO: 2 in the Sequence Listing). The RNA sequence is determined by replacing T with U in SEQ ID NO: 1. Furthermore, MRLN mRNA and pre-mRNA may include sequence variants such as various splicing variants and single nucleotide polymorphisms (SNPs).
本発明化合物が有するMRLN発現の抑制の程度は、MRLNのpre-mRNAレベル、mRNAレベル及びタンパク質レベルのうち、少なくとも1つが当該化合物を投与しない場合に比べて低下し、その結果として筋疾患に伴う症状の予防及び/又は改善が認められる程度であればいずれの程度でもよい。具体的には、例えば、後述するin vitro MRLN発現測定方法において、本発明化合物と細胞を接触させた後、MRLN発現レベルが、非接触時又は陰性コントロール物質接触時と比較して、70%以下、好ましくは50%以下、より好ましくは40%以下、さらに好ましくは30%以下、特に好ましくは20%以下に低下する程度である。例えば、RD細胞(ヒト横紋筋肉腫細胞)をリポフェクション法によって100nMの本発明化合物で処理した際に、MRLN発現レベルが50%以下に低下する程度であってもよい。また、RD細胞をリポフェクション法によって100nMの本発明化合物で処理またはGymnosis法によって1000nMの本発明化合物で処理した際に、そのいずれにおいてもMRLN発現レベルが50%以下に低下する程度であってもよい。 The degree of MRLN expression suppression by the compound of the present invention may be any degree that reduces at least one of MRLN pre-mRNA level, mRNA level, and protein level compared to when the compound is not administered, resulting in prevention and/or amelioration of symptoms associated with muscle diseases. Specifically, for example, in the in vitro MRLN expression measurement method described below, after contacting cells with the compound of the present invention, the MRLN expression level is reduced by 70% or less, preferably 50% or less, more preferably 40% or less, even more preferably 30% or less, and particularly preferably 20% or less, compared to when not contacted or when contacted with a negative control substance. For example, the degree of MRLN expression suppression may be such that when RD cells (human rhabdomyosarcoma cells) are treated with 100 nM of the compound of the present invention by lipofection, the MRLN expression level is reduced by 50% or less. Alternatively, when RD cells are treated with 100 nM of the compound of the present invention by lipofection or 1000 nM of the compound of the present invention by Gymnosis, the MRLN expression level may be reduced to 50% or less in either case.
本発明化合物の活性の検証方法としては、本発明化合物がMRLN発現を抑制することを検証できる方法であればいかなるものでもよく、後述の「本発明化合物の評価方法」に記載された方法が例示される。 The activity of the compounds of the present invention can be verified by any method that can verify that the compounds of the present invention suppress MRLN expression, and examples include the methods described below in the section "Methods for evaluating the compounds of the present invention."
本発明化合物は、MRLN発現を抑制する活性を有する、12~30個の連結したヌクレオシド、好ましくは16~20個の連結したヌクレオシド、さらに好ましくは16~18個の連結したヌクレオシド、特に好ましくは16、17または18個の連結したヌクレオシドからなる修飾オリゴヌクレオチドである。該修飾オリゴヌクレオチドは、配列表の配列番号1の塩基配列の5’末端から15~41位、62~108位、448~471位、649~666位、848~863位、1104~1119位、1232~1254位、1691~1719位、1735~1751位、2195~2211位、2289~2310位、2479~2512位、2616~2631位、2692~2716位、2751~2766位、2893~2909位、2979~2995位、3431~3447位、3564~3585位、3601~3617位、3721~3736位、4074~4089位、4127~4142位、4156~4171位、4277~4292位、4305~4322位、4500~4515位、4613~4628位、5039~5055位、5063~5079位、5103~5119位、5522~5540位、5727~5742位、5772~5803位、5998~6013位、6272~6288位、6695~6711位、6763~6778位、7224~7247位、8013~8028位、9844~9864位、14649~14665位、14903~14920位、14951~14995位、16113~16129位、16235~16254位、16256~16273位、16281~16306位、16316~16336位、16514~16536位、16578~16593位、16610~16637位または16724~16739位のいずれかの塩基配列におけるいずれかの8個以上、好ましくは12個以上、より好ましくは14個以上、さらに好ましくは16個以上および/または、20個以下、好ましくは18個以下、より好ましくは17個以下、さらに好ましくは16個以下、特に好ましくは16個の連続する塩基と100%相補的な塩基配列(以下「MRLN相補的塩基配列」と称することがある)を含むものであればいずれのものでもよい。 The compound of the present invention is a modified oligonucleotide consisting of 12 to 30 linked nucleosides, preferably 16 to 20 linked nucleosides, more preferably 16 to 18 linked nucleosides, and particularly preferably 16, 17, or 18 linked nucleosides, which has the activity of inhibiting MRLN expression. The modified oligonucleotides are selected from the group consisting of positions 15 to 41, 62 to 108, 448 to 471, 649 to 666, 848 to 863, 1104 to 1119, 1232 to 1254, 1691 to 1719, 1735 to 1751, 2195 to 2211, 2289 to 2310, 2479 to 2512, 2616 to 2631, 2692 to 2716, 2751 to 2766, 2893 to 2909, 2979 to 2980, 3000 to 3000, 3010 to 3012, 3013 to 3014, 3015 to 3016, 3017 to 3018, 3019 to 3020, 3021 to 3022, 3023 to 3024, 3025 to 3026, 3026 to 3028, 3029 to 3030, 3031 to 3032, 3033 to 3034, 3035 to 3036, 3037 to 3038, 3039 to 3040, 3041 to 3042, 3043 to 3044, 3045 to 3046, 3047 to 3048, 3048 to 3049, 3049 to 3050, 3051 to 3051, 3052 to 3052, 3053 to 3054, 3055 to 995th, 3431-3447, 3564-3585, 3601-3617, 3721-3736, 4074-4089, 4127-4142, 4156-4171, 4277-4292, 4305-4322 4500-4515, 4613-4628, 5039-5055, 5063-5079, 5103-5119, 5522-5540, 5727-5742, 5772-5803, 5998-6013, 62 72-6288th, 6695-6711, 6763-6778, 7224-7247, 8013-8028, 9844-9864, 14649-14665, 14903-14920, 14951-14995 , 16113-16129, 16235-16254, 16256-16273, 16281-16306, 16316-16336, 16514-16536, 16578-16593, 16610-16637 Any base sequence (hereinafter sometimes referred to as "MRLN complementary base sequence") that is 100% complementary to any 8 or more, preferably 12 or more, more preferably 14 or more, even more preferably 16 or more, and/or 20 or less, preferably 18 or less, more preferably 17 or less, even more preferably 16 or less, and particularly preferably 16 consecutive bases in the base sequence at positions 16724 to 16739 is acceptable.
本発明化合物は、MRLN発現を抑制する活性を有する、12~30個の連結したヌクレオシド、好ましくは16~20個の連結したヌクレオシド、さらに好ましくは16~18個の連結したヌクレオシド、特に好ましくは16、17または18個の連結したヌクレオシドからなる修飾オリゴヌクレオチドである。該修飾オリゴヌクレオチドは、配列表の配列番号1の塩基配列の5’末端から1232~1254位、1691~1719位、1735~1751位、2195~2211位、2289~2308位、3431~3446位、4127~4142位、4156~4171位、4500~4515位、5522~5537位、5727~5742位、5772~5803位、5998~6013位、6272~6287位、6763~6778位、8013~8028位、9846~9864位、14963~14978位、16235~16254位、16256~16273位、16281~16306位または16316~16331位のいずれかの塩基配列におけるいずれかの8個以上、好ましくは12個以上、より好ましくは14個以上、さらに好ましくは16個以上および/または、20個以下、好ましくは18個以下、より好ましくは17個以下、さらに好ましくは16個以下、特に好ましくは16個の連続する塩基と100%相補的な塩基配列を含むものであればいずれのものでもよい。 The compound of the present invention is a modified oligonucleotide consisting of 12 to 30 linked nucleosides, preferably 16 to 20 linked nucleosides, more preferably 16 to 18 linked nucleosides, and particularly preferably 16, 17, or 18 linked nucleosides, which has the activity of inhibiting MRLN expression. The modified oligonucleotides are selected from the following positions from the 5' end of the base sequence of SEQ ID NO: 1 in the Sequence Listing: 1232 to 1254, 1691 to 1719, 1735 to 1751, 2195 to 2211, 2289 to 2308, 3431 to 3446, 4127 to 4142, 4156 to 4171, 4500 to 4515, 5522 to 5537, 5727 to 5742, 5772 to 5803, 5998 to 6013, 6272 to 6287, 6763 to 6778, 8013 to 8028, 9846 to 9864, 1499 to 150 ...500 to 1500 Any base sequence that is 100% complementary to any 8 or more, preferably 12 or more, more preferably 14 or more, even more preferably 16 or more, and/or 20 or less, preferably 18 or less, more preferably 17 or less, even more preferably 16 or less, and particularly preferably 16 consecutive bases in any of the base sequences at positions 63 to 14978, 16235 to 16254, 16256 to 16273, 16281 to 16306, or 16316 to 16331 is acceptable.
本発明化合物は、MRLN発現を抑制する活性を有する、12~30個の連結したヌクレオシド、好ましくは16~20個の連結したヌクレオシド、より好ましくは16~18個の連結したヌクレオシド、特に好ましくは16、17または18個の連結したヌクレオシドからなる修飾オリゴヌクレオチドである。該修飾オリゴヌクレオチドは、配列表の配列番号1の塩基配列の5’末端から16256~16273位の塩基配列におけるいずれかの8個以上、好ましくは12個以上、より好ましくは14個以上、さらに好ましくは16個以上および/または、20個以下、好ましくは18個以下、より好ましくは17個以下、さらに好ましくは16個以下、特に好ましくは16個の連続する塩基と100%相補的な塩基配列を含むものであればいずれのものでもよい。 The compound of the present invention is a modified oligonucleotide consisting of 12 to 30 linked nucleosides, preferably 16 to 20 linked nucleosides, more preferably 16 to 18 linked nucleosides, and particularly preferably 16, 17, or 18 linked nucleosides, and has the activity of inhibiting MRLN expression. The modified oligonucleotide may be any oligonucleotide containing a base sequence that is 100% complementary to any 8 or more, preferably 12 or more, more preferably 14 or more, even more preferably 16 or more, and/or 20 or less, preferably 18 or less, more preferably 17 or less, even more preferably 16 or less, and particularly preferably 16 consecutive bases in the base sequence from positions 16256 to 16273 from the 5' end of the base sequence of SEQ ID NO: 1 in the Sequence Listing.
本発明化合物は、MRLN発現を抑制する活性を有する、12~30個の連結したヌクレオシド、好ましくは16~20個の連結したヌクレオシド、より好ましくは16~18個の連結したヌクレオシド、特に好ましくは16、17または18個の連結したヌクレオシドからなる修飾オリゴヌクレオチドである。該修飾オリゴヌクレオチドは、かつ配列表の配列番号2の塩基配列の5’末端から15~41位、62~91位、100~129位、160~225位、227~244位、252~277位、287~307位、485~507位、549~564位、581~608位または695~710位のいずれかの塩基配列におけるいずれかの8個以上、好ましくは12個以上、より好ましくは14個以上、さらに好ましくは16個以上および/または、20個以下、好ましくは18個以下、より好ましくは17個以下、さらに好ましくは16個以下、特に好ましくは16個の連続する塩基と100%相補的な塩基配列を含むものであればいずれのものでもよい。 The compound of the present invention is a modified oligonucleotide consisting of 12 to 30 linked nucleosides, preferably 16 to 20 linked nucleosides, more preferably 16 to 18 linked nucleosides, and particularly preferably 16, 17, or 18 linked nucleosides, which has the activity of inhibiting MRLN expression. The modified oligonucleotide may be any, as long as it contains a base sequence that is 100% complementary to any 8 or more, preferably 12 or more, more preferably 14 or more, even more preferably 16 or more, and/or 20 or less, preferably 18 or less, more preferably 17 or less, even more preferably 16 or less, and particularly preferably 16 consecutive bases in the base sequence of any of positions 15 to 41, 62 to 91, 100 to 129, 160 to 225, 227 to 244, 252 to 277, 287 to 307, 485 to 507, 549 to 564, 581 to 608, or 695 to 710 from the 5' end of the base sequence of SEQ ID NO: 2 in the Sequence Listing.
本発明化合物は、MRLN発現を抑制する活性を有する、12~30個の連結したヌクレオシド、好ましくは16~20個の連結したヌクレオシド、より好ましくは16~18個の連結したヌクレオシド、特に好ましくは16、17または18個の連結したヌクレオシドからなる修飾オリゴヌクレオチドである。該修飾オリゴヌクレオチドは、配列表の配列番号2の塩基配列の5’末端から172~187位、201~225位、227~244位、252~277位または287~302位のいずれかの塩基配列におけるいずれかの8個以上、好ましくは12個以上、より好ましくは14個以上、さらに好ましくは16個以上および/または、20個以下、好ましくは18個以下、より好ましくは17個以下、さらに好ましくは16個以下、特に好ましくは16個の連続する塩基と100%相補的な塩基配列を含むものであればいずれのものでもよい。 The compound of the present invention is a modified oligonucleotide having the activity of inhibiting MRLN expression, and consisting of 12 to 30 linked nucleosides, preferably 16 to 20 linked nucleosides, more preferably 16 to 18 linked nucleosides, and particularly preferably 16, 17, or 18 linked nucleosides. The modified oligonucleotide may be any oligonucleotide containing a base sequence 100% complementary to any of 8 or more, preferably 12 or more, more preferably 14 or more, even more preferably 16 or more, and/or 20 or less, preferably 18 or less, more preferably 17 or less, even more preferably 16 or less, and particularly preferably 16 consecutive bases in any of the base sequences at positions 172 to 187, 201 to 225, 227 to 244, 252 to 277, or 287 to 302 from the 5' end of the base sequence of SEQ ID NO: 2 in the Sequence Listing.
本発明の修飾オリゴヌクレオチドは、その全長が12~30個の連結したヌクレオシド、好ましくは16~20個の連結したヌクレオシド、より好ましくは16~18個の連結したヌクレオシド、特に好ましくは16、17または18個の連結したヌクレオシドからなる範囲のものである。該修飾オリゴヌクレオチドは、その全長の塩基配列が、配列表の配列番号1または配列番号2の塩基配列における等長部分に対して85%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補性を有するものであれば、上記MRLN相補的塩基配列以外に、その5’末端側及び/又は3’末端側に付加配列を有してもよい。さらに、付加配列は、本発明の修飾オリゴヌクレオチドがMRLN発現を抑制する活性を有するものであれば、いかなるものでもよい。 The modified oligonucleotide of the present invention has a total length of 12 to 30 linked nucleosides, preferably 16 to 20 linked nucleosides, more preferably 16 to 18 linked nucleosides, and particularly preferably 16, 17, or 18 linked nucleosides. The modified oligonucleotide may have an additional sequence at the 5'-end and/or 3'-end in addition to the MRLN-complementary base sequence, so long as the base sequence of the modified oligonucleotide of the present invention is 85% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the same-length portion of the base sequence of SEQ ID NO: 1 or SEQ ID NO: 2 in the Sequence Listing. Furthermore, the additional sequence may be any sequence, as long as the modified oligonucleotide of the present invention has the activity of suppressing MRLN expression.
本発明の修飾オリゴヌクレオチドの全長の塩基配列は、配列表の配列番号1または配列番号2における等長部分に対して85%以上の相補性を有するものであるが、その相補性は好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%であるものである。つまり、本発明の修飾オリゴヌクレオチドの塩基配列は、MRLN pre-mRNA又はmRNAの塩基配列における、当該修飾オリゴヌクレオチドの塩基配列の等長部分に対して完全相補的であることが望ましいが、1つ又は複数のミスマッチ塩基を有していてもよく、85%以上、好ましくは90%以上、より好ましくは95%以上の相補性を有するものが用いられる。上記ミスマッチ塩基は、連続していてもよい。 The full-length base sequence of the modified oligonucleotide of the present invention has 85% or more complementarity to the equal-length portion of SEQ ID NO: 1 or 2 in the Sequence Listing, with this complementarity preferably being 90% or more, more preferably 95% or more, and even more preferably 100%. In other words, the base sequence of the modified oligonucleotide of the present invention is desirably completely complementary to the equal-length portion of the base sequence of the modified oligonucleotide in the base sequence of MRLN pre-mRNA or mRNA, but may contain one or more mismatched bases, and those having 85% or more, preferably 90% or more, and more preferably 95% or more complementarity are used. The mismatched bases may be consecutive.
MRLN pre-mRNA又はmRNAとの本発明の修飾オリゴヌクレオチドの相補性パーセントは、当技術分野で既知のBLASTプログラム(basic local alignment searchtools)及びPowerBLASTプログラム(Altschul et al.,J.Mol.Biol.,1990,215,403 410;Zhang and Madden,Genome Res.,1997,7,649 656)を使用して、慣例的に決定することができる。相同性パーセント、配列同一性又は相補性は、例えば、ギャッププログラム(Wisconsin SequenceAnalysis Package,Version 8 for Unix,Genetics Computer Group,University Research Park,Madison Wis.)によって、Smith and Waterman(Adv.Appl.Math.,1981,2,482 489)のアルゴリズムを使用するデフォルト設定を使用して決定することができる。 The percent complementarity of the modified oligonucleotides of the present invention with MRLN pre-mRNA or mRNA can be routinely determined using BLAST programs (basic local alignment search tools) and PowerBLAST programs known in the art (Altschul et al., J. Mol. Biol., 1990, 215, 403-410; Zhang and Madden, Genome Res., 1997, 7, 649-656). Percent homology, sequence identity or complementarity can be determined, for example, by the GAP program (Wisconsin Sequence Analysis Package, Version 8 for Unix, Genetics Computer Group, University Research Park, Madison, Wis.) using default settings that employ the algorithm of Smith and Waterman (Adv. Appl. Math., 1981, 2, 482-489).
本発明の修飾オリゴヌクレオチドの塩基配列は、具体的には、配列表の配列番号1の塩基配列の5’末端から15~30位、21~36位、22~37位、24~39位、26~41位、62~77位、69~84位、76~91位、91~106位、92~107位、93~108位、448~463位、449~464位、456~471位、649~664位、650~665位、651~666位、848~863位、1104~1119位、1232~1247位、1233~1248位、1239~1254位、1691~1706位、1704~1719位、1735~1750位、1736~1751位、2195~2210位、2196~2211位、2289~2304位、2290~2305位、2293~2308位、2295~2310位、2497~2512位、2616~2631位、2692~2707位、2700~2715位、2701~2716位、2751~2766位、2893~2908位、2894~2909位、2979~2994位、2980~2995位、3431~3446位、3432~3447位、3564~3579位、3569~3584位、3570~3585位、3601~3616位、3602~3617位、3721~3736位、4074~4089位、4127~4142位、4156~4171位、4277~4292位、4305~4320位、4306~4321位、4307~4322位、4500~4515位、4613~4628位、5039~5054位、5040~5055位、5063~5078位、5064~5079位、5103~5118位、5104~5119位、5522~5537位、5525~5540位、5727~5742位、5772~5787位、5773~5788位、5774~5789位、5775~5790位、5776~5791位、5780~5795位、5781~5796位、5782~5797位、5784~5799位、5785~5800位、5786~5801位、5788~5803位、5998~6013位、6272~6287位、6273~6288位、6695~6710位、6696~6711位、6763~6778位、7224~7239位、7232~7247位、8013~8028位、9844~9859位、9845~9860位、9846~9861位、9848~9863位、9849~9864位、14649~14664位、14650~14665位、14903~14918位、14904~14919位、14905~14920位、14951~14966位、14952~14967位、14953~14968位、14956~14971位、14957~14972位、14958~14973位、14959~14974位、14960~14975位、14961~14976位、14962~14977位、14963~14978位、14964~14979位、14965~14980位、14966~14981位、14967~14982位、14968~14983位、14980~14995位、16113~16128位、16114~16129位、16235~16250位、16236~16251位、16237~16252位、16238~16253位、16239~16254位、16256~16271位、16258~16273位、16281~16296位、16282~16297位、16283~16298位、16285~16300位、16287~16302位、16289~16304位、16290~16305位、16291~16306位、16316~16331位、16321~16336位、16514~16529位、16517~16532位、16521~16536位、16578~16593位、16610~16625位、16612~16627位、16614~16629位、16616~16631位、16622~16637位または16724~16739位のいずれかの塩基配列に85%以上、好ましくは90%以上、より好ましくは95%以上、特に好ましくは100%相補的な16個の連続する塩基から構成される塩基配列である。または、該相補的な16個の連続する塩基から構成される塩基配列を含む、17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列である。また前記修飾オリゴヌクレオチドの全長の塩基配列は、配列番号1の塩基配列における等長部分に対して85%以上、86%以上、87%以上、88%以上、89%以上、90%以上、91%以上、92%以上、93%以上、94%以上、95%以上、96%以上、97%以上、98%以上または99%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補的な塩基配列である。 Specifically, the base sequence of the modified oligonucleotide of the present invention is, from the 5' end of the base sequence of SEQ ID NO: 1 in the Sequence Listing, positions 15 to 30, 21 to 36, 22 to 37, 24 to 39, 26 to 41, 62 to 77, 69 to 84, 76 to 91, 91 to 106, 92 to 107, 93 to 108, 448 to 463, 449 to 464, 456 to 471, 649 to 664, 650 to 665, 651 to 666, 848 to 863, 1104 to 1119, 1232 to 1247, 1233 to 1248, 1249 to 1250, 1251 to 1252, 1253 to 1254, 1255 to 1256, 1257 to 1258, 1259 to 1260, 1261 to 1262, 1263 to 1264, 1265 to 1266, 1266 to 1268, 1269 to 1270, 1271 to 1272, 1273 to 1274, 1275 to 1276, 1277 to 1278, 1279 to 1280, 1281 to 1282, 1283 to 1284, 1285 to 1286, 1287 to 1288, 1289 to 1300, 1301 to 1302, 1303 to 248th, 1239-1254, 1691-1706, 1704-1719, 1735-1750, 1736-1751, 2195-2210, 2196-2211, 2289-2304, 2290-2305, 2293-23 08th, 2295-2310, 2497-2512, 2616-2631, 2692-2707, 2700-2715, 2701-2716, 2751-2766, 2893-2908, 2894-2909, 2979-299 4th place, 2980-2995th, 3431-3446th, 3432-3447th, 3564-3579th, 3569-3584th, 3570-3585th, 3601-3616th, 3602-3617th, 3721-3736th, 4074-4089 4127-4142, 4156-4171, 4277-4292, 4305-4320, 4306-4321, 4307-4322, 4500-4515, 4613-4628, 5039-5054, 5040-5055 , 5063-5078th, 5064-5079, 5103-5118, 5104-5119, 5522-5537, 5525-5540, 5727-5742, 5772-5787, 5773-5788, 5774-5789, 5775-5790, 5776-5791, 5780-5795, 5781-5796, 5782-5797, 5784-5799, 5785-5800, 5786-5801, 5788-5803, 5998-6013, 6 272-6287th, 6273-6288, 6695-6710, 6696-6711, 6763-6778, 7224-7239, 7232-7247, 8013-8028, 9844-9859, 9845-9860, 9 846-9861st, 9848-9863, 9849-9864, 14649-14664, 14650-14665, 14903-14918, 14904-14919, 14905-14920, 14951-14966, 1 4952-14967th, 14953-14968, 14956-14971, 14957-14972, 14958-14973, 14959-14974, 14960-14975, 14961-14976, 14962-14 977th, 14963-14978, 14964-14979, 14965-14980, 14966-14981, 14967-14982, 14968-14983, 14980-14995, 16113-16128, 16 114-16129, 16235-16250, 16236-16251, 16237-16252, 16238-16253, 16239-16254, 16256-16271, 16258-16273, 16281-162 96th, 16282-16297, 16283-16298, 16285-16300, 16287-16302, 16289-16304, 16290-16305, 16291-16306, 16316-16331, 163 It is a base sequence consisting of 16 consecutive bases that is 85% or more, preferably 90% or more, more preferably 95% or more, and particularly preferably 100% complementary to any of the base sequences at positions 21 to 16336, 16514 to 16529, 16517 to 16532, 16521 to 16536, 16578 to 16593, 16610 to 16625, 16612 to 16627, 16614 to 16629, 16616 to 16631, 16622 to 16637, or 16724 to 16739. Alternatively, it is a base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases that includes the complementary base sequence consisting of 16 consecutive bases. Furthermore, the full-length base sequence of the modified oligonucleotide is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the equal-length portion of the base sequence of SEQ ID NO: 1.
本発明の修飾オリゴヌクレオチドの塩基配列は、具体的には、配列表の配列番号1の塩基配列の5’末端から1232~1247位、1233~1248位、1239~1254位、1691~1706位、1704~1719位、1735~1750位、1736~1751位、2195~2210位、2196~2211位、2289~2304位、2290~2305位、2293~2308位、3431~3446位、4127~4142位、4156~4171位、4500~4515位、5522~5537位、5727~5742位、5772~5787位、5773~5788位、5774~5789位、5775~5790位、5776~5791位、5780~5795位、5781~5796位、5782~5797位、5784~5799位、5785~5800位、5786~5801位、5788~5803位、5998~6013位、6272~6287位、6763~6778位、8013~8028位、9846~9861位、9848~9863位、9849~9864位、14963~14978位、16235~16250位、16236~16251位、16237~16252位、16238~16253位、16239~16254位、16256~16271位、16258~16273位、16281~16296位、16282~16297位、16283~16298位、16289~16304位、16290~16305位、16291~16306位または16316~16331位のいずれかの塩基配列に85%以上、好ましくは90%以上、より好ましくは95%以上、特に好ましくは100%相補的な16個の連続する塩基から構成される塩基配列である。または、該相補的な16個の連続する塩基から構成される塩基配列を含む、17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列である。また、前記修飾オリゴヌクレオチドの全長の塩基配列は、配列番号1の塩基配列における等長部分に対して85%以上、86%以上、87%以上、88%以上、89%以上、90%以上、91%以上、92%以上、93%以上、94%以上、95%以上、96%以上、97%以上、98%以上または99%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補的な塩基配列である。 Specifically, the base sequence of the modified oligonucleotide of the present invention is, from the 5' end of the base sequence of SEQ ID NO: 1 in the Sequence Listing, positions 1232-1247, 1233-1248, 1239-1254, 1691-1706, 1704-1719, 1735-1750, 1736-1751, 2195-2210, 2196-2211, 2289-2304, 2290-2305, 2293-2308, 3 431st to 3446th, 4127th to 4142nd, 4156th to 4171st, 4500th to 4515th, 5522nd to 5537th, 5727th to 5742nd, 5772nd to 5787th, 5773rd to 5788th, 5774th to 5789th, 5775-5790, 5776-5791, 5780-5795, 5781-5796, 5782-5797, 5784-5799, 5785-5800, 5786-5801 5788-5803, 5998-6013, 6272-6287, 6763-6778, 8013-8028, 9846-9861, 9848-9863, 9849-9864, 1 4963-14978th, 16235-16250, 16236-16251, 16237-16252, 16238-16253, 16239-16254, 16256-16271, 16 It is a base sequence consisting of 16 consecutive bases that is 85% or more, preferably 90% or more, more preferably 95% or more, and particularly preferably 100% complementary to the base sequence of any of positions 258 to 16273, 16281 to 16296, 16282 to 16297, 16283 to 16298, 16289 to 16304, 16290 to 16305, 16291 to 16306, or 16316 to 16331. Alternatively, it is a base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases that includes the complementary base sequence consisting of 16 consecutive bases. Furthermore, the full-length base sequence of the modified oligonucleotide is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the equal-length portion of the base sequence of SEQ ID NO: 1.
本発明の修飾オリゴヌクレオチドの塩基配列は、具体的には、配列表の配列番号1の塩基配列の5’末端から16256~16271位または16258~16273位のいずれかの塩基配列に85%以上、好ましくは90%以上、より好ましくは95%以上、特に好ましくは100%相補的な16個の連続する塩基から構成される塩基配列である。または、該相補的な16個の連続する塩基から構成される塩基配列を含む、17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列である。また、前記修飾オリゴヌクレオチドの全長の塩基配列は、配列番号1における塩基配列の等長部分に対して85%以上、86%以上、87%以上、88%以上、89%以上、90%以上、91%以上、92%以上、93%以上、94%以上、95%以上、96%以上、97%以上、98%以上または99%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補的な塩基配列である。 Specifically, the base sequence of the modified oligonucleotide of the present invention is a base sequence consisting of 16 consecutive bases that is 85% or more, preferably 90% or more, more preferably 95% or more, and particularly preferably 100% complementary to the base sequence of either positions 16256 to 16271 or 16258 to 16273 from the 5' end of the base sequence of SEQ ID NO: 1 in the Sequence Listing. Alternatively, the base sequence is a base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases that includes the complementary base sequence consisting of 16 consecutive bases. Furthermore, the full-length base sequence of the modified oligonucleotide is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the equal-length portion of the base sequence in SEQ ID NO: 1.
本発明の修飾オリゴヌクレオチドの塩基配列は、具体的には、配列表の配列番号2の塩基配列の5’末端から15~30位、21~36位、22~37位、24~39位、26~41位、62~77位、69~84位、76~91位、100~115位、102~117位、112~127位、113~128位、114~129位、160~175位、161~176位、162~177位、165~180位、166~181位、167~182位、168~183位、169~184位、170~185位、171~186位、172~187位、173~188位、174~189位、175~190位、176~191位、177~192位、189~204位、199~214位、200~215位、201~216位、202~217位、203~218位、204~219位、206~221位、207~222位、208~223位、209~224位、210~225位、227~242位、229~244位、252~267位、253~268位、254~269位、256~271位、258~273位、260~275位、261~276位、262~277位、287~302位、292~307位、485~500位、488~503位、492~507位、549~564位、581~596位、583~598位、585~600位、587~602位、593~608位または695~710位のいずれかの塩基配列に85%以上、好ましくは90%以上、より好ましくは95%以上、特に好ましくは100%相補的な16個の連続する塩基から構成される塩基配列である。または、該相補的な16個の連続する塩基から構成される塩基配列を含む、17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列である。また、前記修飾オリゴヌクレオチドの全長の塩基配列は、配列番号2における等長部分の塩基配列に85%以上、86%以上、87%以上、88%以上、89%以上、90%以上、91%以上、92%以上、93%以上、94%以上、95%以上、96%以上、97%以上、98%以上または99%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補的な塩基配列である。 Specifically, the base sequence of the modified oligonucleotide of the present invention is, from the 5' end of the base sequence of SEQ ID NO: 2 in the Sequence Listing, positions 15 to 30, 21 to 36, 22 to 37, 24 to 39, 26 to 41, 62 to 77, 69 to 84, 76 to 91, 100 to 115, 102 to 117, 112 to 127, 113 to 128, 114 to 129, 160 to 175, 161 to 176, 162 to 177, 163 to 178, 164 to 179, 170 to 180, 171 to 182, 172 to 183, 173 to 184, 175 to 186, 176 to 187, 177 to 188, 189 to 200, 200 to 210, 201 to 211, 202 to 212, 203 to 213, 204 to 215, 205 to 216, 206 to 217, 207 to 218, 208 to 219, 219 to 220, 221 to 222, 222 to 223, 223 to 224, 224 to 225, 225 to 226, 226 to 227, 227 to 228, 228 to 230, 229 to 231, 232 to 233, 234 to 235, 236 to 237, 23 62nd to 177th, 165th to 180th, 166th to 181st, 167th to 182nd, 168th to 183rd, 169th to 184th, 170th to 185th, 171st to 186th, 172nd to 187th, 173rd to 1st 88th, 174-189, 175-190, 176-191, 177-192, 189-204, 199-214, 200-215, 201-216, 202-217, 2 03-218th, 204-219th, 206th-221st, 207th-222nd, 208th-223rd, 209th-224th, 210th-225th, 227th-242nd, 229th-244th, 252nd-2 67th, 253-268, 254-269, 256-271, 258-273, 260-275, 261-276, 262-277, 287-302, 292-307, 4 It is a base sequence consisting of 16 consecutive bases that is 85% or more, preferably 90% or more, more preferably 95% or more, and particularly preferably 100% complementary to the base sequence of any of positions 85 to 500, 488 to 503, 492 to 507, 549 to 564, 581 to 596, 583 to 598, 585 to 600, 587 to 602, 593 to 608, or 695 to 710. Alternatively, it is a base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases that includes the complementary base sequence consisting of 16 consecutive bases. Furthermore, the full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the base sequence of the same length portion in SEQ ID NO: 2.
本発明の修飾オリゴヌクレオチドの塩基配列は、具体的には、配列表の配列番号2の塩基配列の5’末端から172~187位、201~216位、203~218位、204~219位、206~221位、207~222位、208~223位、209~224位、210~225位、227~242位、229~244位、252~267位、253~268位、254~269位、260~275位、261~276位、262~277位または287~302位のいずれかの塩基配列に85%以上、好ましくは90%以上、より好ましくは95%以上、特に好ましくは100%相補的な16個の連続する塩基から構成される塩基配列である。または、該相補的な16個の連続する塩基から構成される塩基配列を含む、17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列である。また、前記修飾オリゴヌクレオチドの全長の塩基配列は、配列番号2における等長部分の塩基配列に85%以上、86%以上、87%以上、88%以上、89%以上、90%以上、91%以上、92%以上、93%以上、94%以上、95%以上、96%以上、97%以上、98%以上または99%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補的な塩基配列である。 Specifically, the base sequence of the modified oligonucleotide of the present invention is a base sequence consisting of 16 consecutive bases that is 85% or more, preferably 90% or more, more preferably 95% or more, and particularly preferably 100% complementary to any of the base sequences at positions 172 to 187, 201 to 216, 203 to 218, 204 to 219, 206 to 221, 207 to 222, 208 to 223, 209 to 224, 210 to 225, 227 to 242, 229 to 244, 252 to 267, 253 to 268, 254 to 269, 260 to 275, 261 to 276, 262 to 277, or 287 to 302 from the 5' end of the base sequence of SEQ ID NO: 2 in the Sequence Listing. Alternatively, the base sequence is a base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases, including the complementary base sequence consisting of 16 consecutive bases. Furthermore, the full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the base sequence of the same length portion in SEQ ID NO: 2.
このような修飾オリゴヌクレオチドにおいて、17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列は、該相補的な16個の連続する塩基から構成される塩基配列の5‘末端または3’末端において、1~4個、好ましくは1および/または2個のヌクレオシドがヌクレオシド間結合により連結した塩基配列である。該ヌクレオシドおよび/またはヌクレオシド間結合は修飾ヌクレオシドおよび/または修飾ヌクレオシド間結合であってもよい。 In such modified oligonucleotides, the base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases is a base sequence in which 1 to 4, preferably 1 and/or 2, nucleosides are linked by internucleoside bonds at the 5' or 3' end of the complementary base sequence consisting of 16 consecutive bases. The nucleosides and/or internucleoside bonds may be modified nucleosides and/or modified internucleoside bonds.
本発明の修飾オリゴヌクレオチドの具体的な塩基配列の一例としては、
CCAGAATTATCCCGCT(配列番号1の16238~16253位の相補配列)(配列表の配列番号275)、
TCCAGAATTATCCCGC(配列番号1の16239~16254位の相補配列)(配列表の配列番号276)、
AGTTTTTACCAGTCAT(配列番号1の16256~16271位の相補配列)(配列表の配列番号277)、
CCAGTTTTTACCAGTC(配列番号1の16258~16273位の相補配列)(配列表の配列番号278)、
GACTTTTGGGAGTAGT(配列番号1の16289~16304位の相補配列)(配列表の配列番号279)、
AGACTTTTGGGAGTAG(配列番号1の16290~16305位の相補配列)(配列表の配列番号229)または
GAAGTCTTCCCACAAT(配列番号1の16316~16331位の相補配列)(配列表の配列番号231)
に記載される塩基配列があげられる。または、該塩基配列を含む17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列があげられる。また、前記修飾オリゴヌクレオチドの全長の塩基配列は、配列番号1における等長部分の塩基配列に85%以上、86%以上、87%以上、88%以上、89%以上、90%以上、91%以上、92%以上、93%以上、94%以上、95%以上、96%以上、97%以上、98%以上または99%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補的な塩基配列である。
An example of a specific base sequence of the modified oligonucleotide of the present invention is:
CCAGAATTATCCCGCT (complementary sequence of positions 16238 to 16253 of SEQ ID NO: 1) (SEQ ID NO: 275 in the Sequence Listing),
TCCAGAATTATCCCGC (complementary sequence of positions 16239 to 16254 of SEQ ID NO: 1) (SEQ ID NO: 276 in the Sequence Listing),
AGTTTTTACCAGTCAT (complementary sequence of positions 16256 to 16271 of SEQ ID NO: 1) (SEQ ID NO: 277 in the Sequence Listing),
CCAGTTTTACCAGTC (complementary sequence of positions 16258 to 16273 of SEQ ID NO: 1) (SEQ ID NO: 278 in the Sequence Listing),
GACTTTTTGGGAGTAGT (complementary sequence of positions 16289 to 16304 of SEQ ID NO: 1) (SEQ ID NO: 279 in the Sequence Listing),
AGACTTTTTGGGAGTAG (complementary sequence of positions 16290 to 16305 of SEQ ID NO: 1) (SEQ ID NO: 229 in the Sequence Listing) or GAAGTCTTCCCCACAAT (complementary sequence of positions 16316 to 16331 of SEQ ID NO: 1) (SEQ ID NO: 231 in the Sequence Listing)
or a base sequence comprising 17, 18, 19, or 20, preferably 17 or 18, consecutive bases containing the base sequence. The full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the base sequence of the same length portion in SEQ ID NO: 1.
本発明の修飾オリゴヌクレオチドの具体的な塩基配列の別の一例としては、
TTATCCCGCTCCCTGA(配列番号2の203~218位の相補配列)(配列表の配列番号273)または
ATTATCCCGCTCCCTG(配列番号2の204~219位の相補配列)(配列表の配列番号280)
に記載される塩基配列があげられる。または、該塩基配列を含む17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列があげられる。また、前記修飾オリゴヌクレオチドの全長の塩基配列は、配列番号2における等長部分の塩基配列に85%以上、86%以上、87%以上、88%以上、89%以上、90%以上、91%以上、92%以上、93%以上、94%以上、95%以上、96%以上、97%以上、98%以上または99%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補的な塩基配列である。
Another example of a specific base sequence of the modified oligonucleotide of the present invention is:
TTATCCCGCTCCCTGA (complementary sequence of positions 203 to 218 of SEQ ID NO: 2) (SEQ ID NO: 273 in the Sequence Listing) or ATTATCCCGCTCCCTG (complementary sequence of positions 204 to 219 of SEQ ID NO: 2) (SEQ ID NO: 280 in the Sequence Listing)
or a base sequence comprising 17, 18, 19, or 20, preferably 17 or 18, consecutive bases containing the base sequence. The full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the base sequence of the isolength portion of SEQ ID NO: 2.
このような修飾オリゴヌクレオチドの塩基配列として、好ましくは、
TCCAGAATTATCCCGC(配列番号1の16239~16254位の相補配列)(配列表の配列番号276)、
AGTTTTTACCAGTCAT(配列番号1の16256~16271位の相補配列)(配列表の配列番号277)、
CCAGTTTTTACCAGTC(配列番号1の16258~16273位の相補配列)(配列表の配列番号278)、
AGACTTTTGGGAGTAG(配列番号1の16290~16305位の相補配列)(配列表の配列番号229)または
GAAGTCTTCCCACAAT(配列番号1の16316~16331位の相補配列)(配列表の配列番号231)
に記載される塩基配列があげられる。または、該塩基配列を含む17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列があげられる。また、前記修飾オリゴヌクレオチドの全長の塩基配列は、配列番号1における等長部分の塩基配列に85%以上、86%以上、87%以上、88%以上、89%以上、90%以上、91%以上、92%以上、93%以上、94%以上、95%以上、96%以上、97%以上、98%以上または99%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補的な塩基配列である。
The base sequence of such a modified oligonucleotide is preferably:
TCCAGAATTATCCCGC (complementary sequence of positions 16239 to 16254 of SEQ ID NO: 1) (SEQ ID NO: 276 in the Sequence Listing),
AGTTTTTACCAGTCAT (complementary sequence of positions 16256 to 16271 of SEQ ID NO: 1) (SEQ ID NO: 277 in the Sequence Listing),
CCAGTTTTACCAGTC (complementary sequence of positions 16258 to 16273 of SEQ ID NO: 1) (SEQ ID NO: 278 in the Sequence Listing),
AGACTTTTTGGGAGTAG (complementary sequence of positions 16290 to 16305 of SEQ ID NO: 1) (SEQ ID NO: 229 in the Sequence Listing) or GAAGTCTTCCCCACAAT (complementary sequence of positions 16316 to 16331 of SEQ ID NO: 1) (SEQ ID NO: 231 in the Sequence Listing)
or a base sequence comprising 17, 18, 19, or 20, preferably 17 or 18, consecutive bases containing the base sequence. The full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the base sequence of the same length portion in SEQ ID NO: 1.
また、このような修飾オリゴヌクレオチドの塩基配列として、さらに好ましくは、
AGTTTTTACCAGTCAT(配列番号1の16256~16271位の相補配列)(配列表の配列番号277)、
CCAGTTTTTACCAGTC(配列番号1の16258~16273位の相補配列)(配列表の配列番号278)または
AGACTTTTGGGAGTAG(配列番号1の16290~16305位の相補配列)(配列表の配列番号229)
に記載される塩基配列があげられる。または、該塩基配列を含む17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列があげられる。。また、前記修飾オリゴヌクレオチドの全長の塩基配列は、配列番号1の塩基配列における等長部分に対して85%以上、86%以上、87%以上、88%以上、89%以上、90%以上、91%以上、92%以上、93%以上、94%以上、95%以上、96%以上、97%以上、98%以上または99%以上、好ましくは90%以上、より好ましくは95%以上、さらに好ましくは100%相補的な塩基配列である。
Furthermore, the base sequence of such a modified oligonucleotide is more preferably:
AGTTTTTACCAGTCAT (complementary sequence of positions 16256 to 16271 of SEQ ID NO: 1) (SEQ ID NO: 277 in the Sequence Listing),
CCAGTTTTTTACCAGTC (complementary sequence of positions 16258 to 16273 of SEQ ID NO: 1) (SEQ ID NO: 278 in the Sequence Listing) or AGACTTTTGGGGAGTAG (complementary sequence of positions 16290 to 16305 of SEQ ID NO: 1) (SEQ ID NO: 229 in the Sequence Listing)
or a base sequence comprising 17, 18, 19, or 20, preferably 17 or 18, consecutive bases containing the base sequence. Furthermore, the full-length base sequence of the modified oligonucleotide is a base sequence that is 85% or more, 86% or more, 87% or more, 88% or more, 89% or more, 90% or more, 91% or more, 92% or more, 93% or more, 94% or more, 95% or more, 96% or more, 97% or more, 98% or more, or 99% or more, preferably 90% or more, more preferably 95% or more, and even more preferably 100% complementary to the equal-length portion of the base sequence of SEQ ID NO: 1.
これらの修飾オリゴヌクレオチドの塩基配列に含まれる塩基のうち、1つ以上のシトシンは後述する修飾塩基の5-メチルシトシンでもよい。このような修飾オリゴヌクレオチドの塩基配列は、具体的には、例えば、配列番号213、配列番号214,配列番号218,配列番号219,配列番号228,配列番号229または配列番号231に示す塩基配列、または、該塩基配列を含む17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列である。また、該修飾オリゴヌクレオチドの全長の塩基配列は、配列番号1における等長部分の塩基配列に90%以上、好ましくは95%以上、より好ましくは100%相補的な塩基配列である。または、配列番号273または配列番号274に示す塩基配列、または、該塩基配列を含む17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列である。該s修飾オリゴヌクレオチドの全長の塩基配列は、配列番号2における等長部分の塩基配列に90%以上、好ましくは95%以上、より好ましくは100%相補的な塩基配列である。好ましくは、配列番号214,配列番号218,配列番号219,配列番号229または配列番号231に示す塩基配列、または、該塩基配列を含む17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列であり、修飾オリゴヌクレオチドの全長の塩基配列が、配列番号1における等長部分の塩基配列に90%以上、好ましくは95%以上、より好ましくは100%相補的な塩基配列があげられる。より好ましくは、配列番号218,配列番号219,または配列番号229に示す塩基配列、または、該塩基配列を含む17、18、19もしくは20個、好ましくは17もしくは18個の連続する塩基から構成される塩基配列であり、修飾オリゴヌクレオチドの全長の塩基配列が、配列番号1における塩基配列の等長部分に対して90%以上、好ましくは95%以上、より好ましくは100%相補的な塩基配列があげられる。 Among the bases contained in the base sequences of these modified oligonucleotides, one or more cytosines may be 5-methylcytosine, a modified base described below. Specific examples of the base sequences of such modified oligonucleotides include the base sequences set forth in SEQ ID NO:213, SEQ ID NO:214, SEQ ID NO:218, SEQ ID NO:219, SEQ ID NO:228, SEQ ID NO:229, and SEQ ID NO:231, or base sequences comprising said base sequence and consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases. Furthermore, the full-length base sequence of the modified oligonucleotide is a base sequence that is 90% or more, preferably 95% or more, and more preferably 100% complementary to the base sequence of the isomeric portion in SEQ ID NO:1. Alternatively, the base sequence may be the base sequence set forth in SEQ ID NO:273 or SEQ ID NO:274, or a base sequence comprising said base sequence and consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases. The full-length base sequence of the s-modified oligonucleotide is 90% or more, preferably 95% or more, and more preferably 100% complementary to the base sequence of the isolength portion in SEQ ID NO: 2. Preferred base sequences include the base sequence shown in SEQ ID NO: 214, SEQ ID NO: 218, SEQ ID NO: 219, SEQ ID NO: 229, and SEQ ID NO: 231, or a base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases containing the base sequence, and the full-length base sequence of the modified oligonucleotide is 90% or more, preferably 95% or more, and more preferably 100% complementary to the base sequence of the isolength portion in SEQ ID NO: 1. More preferably, it is a base sequence shown in SEQ ID NO: 218, SEQ ID NO: 219, or SEQ ID NO: 229, or a base sequence consisting of 17, 18, 19, or 20, preferably 17 or 18, consecutive bases including said base sequence, and the full-length base sequence of the modified oligonucleotide is 90% or more, preferably 95% or more, and more preferably 100% complementary to the equal-length portion of the base sequence in SEQ ID NO: 1.
本発明修飾オリゴヌクレオチドは、2本鎖修飾オリゴヌクレオチドであってもよいが、1本鎖修飾オリゴヌクレオチドが好ましく用いられる。 The modified oligonucleotide of the present invention may be a double-stranded modified oligonucleotide, but a single-stranded modified oligonucleotide is preferably used.
本発明修飾オリゴヌクレオチドは、オリゴヌクレオチドを構成する少なくとも1つのヌクレオシドが修飾塩基を含むものでもよいし、オリゴヌクレオチドを構成する少なくとも1つのヌクレオシドが修飾糖を含むものでもよい。また、修飾オリゴヌクレオチドを構成する少なくとも1つのヌクレオシド間結合が、修飾ヌクレオシド間結合を含むものでもよい。 The modified oligonucleotide of the present invention may be one in which at least one nucleoside constituting the oligonucleotide contains a modified base, or at least one nucleoside constituting the oligonucleotide contains a modified sugar. Furthermore, at least one internucleoside bond constituting the modified oligonucleotide may contain a modified internucleoside bond.
本発明修飾オリゴヌクレオチドは、それを構成する少なくとも1つのヌクレオシドが修飾糖を含むものが好ましく用いられる。修飾糖としては、例えば、置換糖または二環式糖があげられる。このような修飾糖を有する修飾オリゴヌクレオチドは、ヌクレアーゼ安定性の増強、標的核酸に対する結合親和性の増大等の有利な特性を有する。 The modified oligonucleotides of the present invention preferably contain at least one nucleoside that contains a modified sugar. Examples of modified sugars include substituted sugars and bicyclic sugars. Modified oligonucleotides containing such modified sugars have advantageous properties such as enhanced nuclease stability and increased binding affinity for target nucleic acids.
置換糖としては、具体的には、例えば、5’-ビニル、5’-メチル)、4’-S、2’-F、2’-OCH3(2’-OMe)、2’-OCH2CH3、2’-OCH2CH2Fまたは2’-O(CH2)2OCH3(2’-MOE)で修飾されたヌクレオシドの糖部分が挙げられる。 Specific examples of substituted sugars include the sugar moiety of a nucleoside modified with 5'-vinyl, 5'-methyl), 4'-S, 2'-F, 2'-OCH 3 (2'-OMe), 2'-OCH 2 CH 3 , 2'-OCH 2 CH 2 F, or 2'-O(CH 2 ) 2 OCH 3 (2'-MOE).
二環式糖としては、具体的には、例えば、4’と2’のリボシル環原子の間の架橋を含むヌクレオシドの糖部分があげられ、具体的には、例えば、架橋が以下の式の1つを含むヌクレオシドの糖部分があげられる:4’-(CH2)-O-2’(LNA);4’-(CH2)-S-2’;4’-(CH2)2-O-2’(ENA)。また、他の二環式糖の例としては、国際公開2020/100826号に開示された架橋型人工核酸ALNAの糖部分があげられ、具体的には、ALNA[Ms]、ALNA[mU]、ALNA[ipU]、ALNA[Oxz]、又はALNA[Trz]の糖部分があげられ、好ましくは、ALNA[Ms]の糖部分があげられる。 Specific examples of bicyclic sugars include sugar moieties of nucleosides containing a bridge between the 4' and 2' ribosyl ring atoms, such as sugar moieties of nucleosides in which the bridge comprises one of the following formulas: 4'-(CH 2 )-O-2'(LNA);4'-(CH 2 )-S-2';4'-(CH 2 ) 2 -O-2' (ENA). Other examples of bicyclic sugars include the sugar moieties of the bridged artificial nucleic acid ALNA disclosed in WO 2020/100826, such as the sugar moieties of ALNA[Ms], ALNA[mU], ALNA[ipU], ALNA[Oxz], or ALNA[Trz], preferably the sugar moiety of ALNA[Ms].
ある種の実施態様(ALNA[mU])では、二環式糖(ALNA[mU]の糖部分)を含むヌクレオシドは下記式(I):
[式中、
Bは、塩基であり;
R1、R2、R3及びR4は各々独立して、水素原子であり;
R5及びR6は各々独立して、水素原子であり;
mは、1であり;
Xは、下記式(II-1):
で示される基であり;
式(II-1)中に記載の記号:
は、2’-アミノ基との結合点を示し;
R7及びR8の一方が水素原子であり、他方が無置換のメチル基である。]
で表されるヌクレオシドである(例えば、国際公開2020/100826号を参照)。
In certain embodiments (ALNA[mU]), the nucleoside containing a bicyclic sugar (the sugar portion of ALNA[mU]) has the following formula (I):
[In the formula,
B is a base;
R 1 , R 2 , R 3 and R 4 are each independently a hydrogen atom;
R5 and R6 are each independently a hydrogen atom;
m is 1;
X is represented by the following formula (II-1):
is a group represented by the formula:
Symbols shown in formula (II-1):
indicates the point of attachment to the 2'-amino group;
One of R7 and R8 is a hydrogen atom, and the other is an unsubstituted methyl group.
It is a nucleoside represented by the formula (see, for example, WO 2020/100826).
ある種の実施態様(ALNA[ipU])では、二環式糖(ALNA[ipU]の糖部分)を含むヌクレオシドは、上記のALNA[mU]において定義する式(I)を有するヌクレオシドであって、該式中、
Bは、塩基であり;
R1、R2、R3及びR4は各々独立して、水素原子であり;
R5及びR6は各々独立して、水素原子であり;
mは、1であり;
Xが、下記式(II-1):
で示される基であり;
R7及びR8の一方が水素原子であり、他方が無置換のイソプロピル基である、ヌクレオシドである(例えば、国際公開2020/100826号を参照)。
In certain embodiments (ALNA[ipU]), the nucleoside containing a bicyclic sugar (the sugar portion of ALNA[ipU]) is a nucleoside having formula (I), as defined above in ALNA[mU], wherein:
B is a base;
R 1 , R 2 , R 3 and R 4 are each independently a hydrogen atom;
R5 and R6 are each independently a hydrogen atom;
m is 1;
X is represented by the following formula (II-1):
is a group represented by the formula:
A nucleoside in which one of R7 and R8 is a hydrogen atom and the other is an unsubstituted isopropyl group (see, for example, WO 2020/100826).
ある種の実施態様(ALNA[Trz])では、二環式(ALNA[Trz]の糖部分)を含むヌクレオシドは、上記のALNA[mU]において定義する式(I)を有するヌクレオシドであって、該式中、
Bは、塩基であり;
R1、R2、R3及びR4は各々独立して、水素原子であり;
R5及びR6は各々独立して、水素原子であり;
mは、1であり;
Xが、下記式(II-2):
で示される基であり;
Aが、1,5-ジメチル-1,2,4-トリアゾール-3-イル基である、ヌクレオシドである(例えば、国際公開2020/100826号参照)。
In certain embodiments (ALNA[Trz]), the bicyclic (sugar portion of ALNA[Trz]) containing nucleoside is a nucleoside having formula (I) as defined above in ALNA[mU], wherein:
B is a base;
R 1 , R 2 , R 3 and R 4 are each independently a hydrogen atom;
R5 and R6 are each independently a hydrogen atom;
m is 1;
X is represented by the following formula (II-2):
is a group represented by the formula:
A is a nucleoside in which A is a 1,5-dimethyl-1,2,4-triazol-3-yl group (see, for example, WO 2020/100826).
ある種の実施態様(ALNA[Oxz])では、二環式糖(ALNA[Oxz]の糖部分)を含むヌクレオシドは、上記のALNA[mU]において定義する式(I)を有するヌクレオシドであって、該式中、
Bは、塩基であり;
R1、R2、R3及びR4は各々独立して、水素原子であり;
R5及びR6は各々独立して、水素原子であり;
mは、1であり;
Xが、下記式(II-2):
で示される基であり;
Aが、5-メチル-1,2,4-オキサジアゾール-3-イル基である、ヌクレオシドである(例えば、国際公開2020/100826号参照)。
In certain embodiments (ALNA[Oxz]), the nucleoside containing a bicyclic sugar (the sugar portion of ALNA[Oxz]) is a nucleoside having formula (I), as defined above in ALNA[mU], wherein:
B is a base;
R 1 , R 2 , R 3 and R 4 are each independently a hydrogen atom;
R5 and R6 are each independently a hydrogen atom;
m is 1;
X is represented by the following formula (II-2):
is a group represented by the formula:
A is a nucleoside in which A is a 5-methyl-1,2,4-oxadiazol-3-yl group (see, for example, WO 2020/100826).
ある種の実施態様(ALNA[Ms])では、二環式糖(ALNA[Ms])を含むヌクレオシドは、上記のALNA[mU]において定義する式(I)を有するヌクレオシドであって、該式中、
Bは、塩基であり;
R1、R2、R3及びR4は各々独立して、水素原子であり;
R5及びR6は各々独立して、水素原子であり;
mは、1であり;
Xが、下記式(II-3):
で示される基であり;
Mは、無置換のメチル基で置換されたスルホニル基である、ヌクレオシドである(例えば、国際公開2020/100826号参照)。
In certain embodiments (ALNA[Ms]), the nucleoside containing a bicyclic sugar (ALNA[Ms]) is a nucleoside having formula (I) as defined above in ALNA[mU], wherein:
B is a base;
R 1 , R 2 , R 3 and R 4 are each independently a hydrogen atom;
R5 and R6 are each independently a hydrogen atom;
m is 1;
X is represented by the following formula (II-3):
is a group represented by the formula:
M is a nucleoside that is a sulfonyl group substituted with an unsubstituted methyl group (see, for example, WO 2020/100826).
本発明修飾オリゴヌクレオチドは、それを構成する少なくとも1つのヌクレオシドが修飾塩基を含むものが好ましく用いられる。このような修飾塩基を有する修飾オリゴヌクレオチドは、ヌクレアーゼ安定性の増強、標的核酸に対する結合親和性の増大等の有利な特性を有する。
修飾塩基としては、具体的には、例えば、5-メチルシトシンがあげられる。5-メチルシトシンは、5位に結合したメチル基で修飾されたシトシンを意味する。
The modified oligonucleotide of the present invention preferably contains a modified base in at least one nucleoside constituting the oligonucleotide, and such modified oligonucleotides have advantageous properties such as enhanced nuclease stability and increased binding affinity to target nucleic acids.
A specific example of a modified base is 5-methylcytosine, which means a cytosine modified with a methyl group attached to the 5-position.
本発明修飾オリゴヌクレオチドは、それを構成する少なくとも1つのヌクレオシド間結合が修飾ヌクレオシド間結合を含むものが好ましく用いられる。このような修飾ヌクレオシド間結合を有する修飾オリゴヌクレオチドは、例えば、細胞取り込みの増強、標的核酸に対する親和性の増強及びヌクレアーゼの存在下での安定性の増大などの有利な特徴を有する。 The modified oligonucleotide of the present invention is preferably one in which at least one of the internucleoside linkages comprising it contains a modified internucleoside linkage. Modified oligonucleotides having such modified internucleoside linkages have advantageous properties such as enhanced cellular uptake, enhanced affinity for target nucleic acids, and increased stability in the presence of nucleases.
修飾ヌクレオシド間結合としては、具体的には、例えば、ホスホロチオエートヌクレオシド間結合があげられる。ホスホロチオエートヌクレオシド間結合は、非架橋酸素原子の1つを硫黄原子で置き換えることによってホスホジエステル結合が修飾される、ヌクレオシド間の結合を意味する。 Specific examples of modified internucleoside linkages include phosphorothioate internucleoside linkages. A phosphorothioate internucleoside linkage refers to a linkage between nucleosides in which the phosphodiester bond is modified by replacing one of the non-bridging oxygen atoms with a sulfur atom.
本発明の修飾オリゴヌクレオチドは、ヌクレアーゼによる分解に対する抵抗性の増大、細胞取り込みの増大、標的核酸に対する結合親和性の増大及び/又はMRLN発現抑制活性の増大を獲得するために、ギャップマー構造を有することができる。ギャップマー構造は、RNase Hによる切断を支援する複数のヌクレオシドを有する内部領域が、1つ又は複数のヌクレオシドを有する外部領域間に位置する構造を意味する。内部領域は、「ギャップセグメント」と言うことができる。また外部領域は「ウイングセグメント」と言うことができる。ギャップセグメントより5’側に存在するウイングセグメントを「5’ウイングセグメント」と言うことができる。またギャップセグメントより3’側に存在するウイングセグメントを「3’ウイングセグメント」と言うことができる。ギャップマーでは、ウイングセグメントの全てのヌクレオシドの糖部分は修飾糖である。ギャップセグメントのヌクレオシドのうち、ウイングセグメントへ隣接しているヌクレオシド(ギャップセグメントの最も5’側のヌクレオシド及び最も3’側のヌクレオシド)の糖部分は、天然のDNAの糖部分である。ギャップセグメントのヌクレオシドのうち、ウイングセグメントへ隣接していないヌクレオシドの糖部分は、天然のDNAの糖部分のみでもよいし、1またはそれ以上の修飾糖を含んでもよい。 The modified oligonucleotides of the present invention can have a gapmer structure to achieve increased resistance to nuclease degradation, increased cellular uptake, increased binding affinity for target nucleic acids, and/or increased MRLN expression inhibitory activity. A gapmer structure refers to a structure in which an internal region having multiple nucleosides that supports RNase H cleavage is located between external regions having one or more nucleosides. The internal region can be referred to as a "gap segment." The external region can be referred to as a "wing segment." The wing segment located 5' from the gap segment can be referred to as a "5' wing segment." The wing segment located 3' from the gap segment can be referred to as a "3' wing segment." In a gapmer, the sugar moieties of all nucleosides in the wing segment are modified sugars. The sugar moieties of the nucleosides adjacent to the wing segment (the 5'-most and 3'-most nucleosides of the gap segment) are sugar moieties of natural DNA. The sugar moieties of nucleosides in the gap segment that are not adjacent to the wing segments may consist solely of natural DNA sugar moieties or may contain one or more modified sugars.
このようなギャップマー構造を有する修飾オリゴヌクレオチドとして、例えば、1)ギャップセグメント、2)5’ウイングセグメント及び3)3’ウイングセグメント、を含み、前記ギャップセグメントが前記5’ウイングセグメントと前記3’ウイングセグメントとの間に位置付けられ、前記5’ウイングセグメント及び3’ウイングセグメントを構成するヌクレオシドの糖部分が全て修飾糖である、修飾オリゴヌクレオチドがあげられる。また修飾糖として、ALNA[Ms]の糖部分が好ましく用いられる。 An example of a modified oligonucleotide having such a gapmer structure is a modified oligonucleotide comprising 1) a gap segment, 2) a 5' wing segment, and 3) a 3' wing segment, where the gap segment is positioned between the 5' wing segment and the 3' wing segment, and the sugar moieties of the nucleosides comprising the 5' wing segment and the 3' wing segment are all modified sugars. Furthermore, the sugar moiety of ALNA[Ms] is preferably used as the modified sugar.
本発明の修飾オリゴヌクレオチドは、それらの医薬的に許容可能な塩の形態で存在し得る。医薬的に許容可能な塩としては、本発明修飾オリゴヌクレオチドの所望の生物学的活性を保持し、かつそれに望ましくない毒物学的影響を与えない塩であればよいが、金属イオンなどの無機物イオンと形成される塩が好ましい。具体的には、ナトリウム塩やカリウム塩があげられ、好ましくはナトリウム塩があげられる。また、本発明の修飾オリゴヌクレオチドは、イオンの形態で存在することもできる。 The modified oligonucleotides of the present invention may exist in the form of their pharmaceutically acceptable salts. Pharmaceutically acceptable salts may be any salt that retains the desired biological activity of the modified oligonucleotides of the present invention without imparting any undesirable toxicological effects thereto, but salts formed with inorganic ions such as metal ions are preferred. Specific examples include sodium salts and potassium salts, with sodium salts being preferred. The modified oligonucleotides of the present invention may also exist in the form of ions.
本発明の修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩は、常法によって合成することができ、例えば、市販または公知の方法で合成可能なアミダイトを使用してホスホロアミダイト法により合成することができる。 The modified oligonucleotides or pharmaceutically acceptable salts thereof of the present invention can be synthesized by conventional methods, for example, by the phosphoramidite method using amidites that are commercially available or can be synthesized by known methods.
本発明の修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩は、1つ又は複数の場所で、コンジュゲート基とコンジュゲートしたものであってもよい。コンジュゲート基としては、具体的には例えば、脂肪酸、コレステロール、糖質、リン脂質、抗体等の生体内分子に対して親和性を有するタンパク質、ビオチン、フェナジン、ビタミン、ペプチド、葉酸塩、フェナントリジン、アントラキノン、アクリジン、フルオレセイン、ローダミン、クマリン、色素などがあげられる。上記コンジュゲートした修飾オリゴヌクレオチドは公知の方法によって製造され、その活性、組織分布、細胞分布又は細胞取り込みを増強するものを選択することができる。コンジュゲート基は修飾オリゴヌクレオチドに直接結合していてもよく、リンカーを介していてもよい。 The modified oligonucleotide or pharmaceutically acceptable salt thereof of the present invention may be conjugated to a conjugate group at one or more locations. Specific examples of conjugate groups include proteins having affinity for biological molecules such as fatty acids, cholesterol, carbohydrates, phospholipids, and antibodies, as well as biotin, phenazine, vitamins, peptides, folates, phenanthridine, anthraquinone, acridine, fluorescein, rhodamine, coumarin, and dyes. The conjugated modified oligonucleotides are produced by known methods, and those that enhance their activity, tissue distribution, cellular distribution, or cellular uptake can be selected. The conjugate group may be bound directly to the modified oligonucleotide or via a linker.
(本発明化合物の評価方法)
本発明化合物の評価方法としては、本発明化合物がMRLNの細胞内における発現レベルの抑制を検証できる方法であればいかなるものでもよいが、具体的には、例えば、以下に示すin vitro及びin vivo MRLN発現測定方法が用いられる。
(Method for evaluating the compound of the present invention)
The method for evaluating the compound of the present invention may be any method that can verify the suppression of the expression level of MRLN in cells by the compound of the present invention. Specifically, for example, the following in vitro and in vivo MRLN expression measurement methods can be used.
本発明化合物の細胞内におけるMRLN発現の抑制を評価するための、in vitro MRLN発現測定方法は、MRLNが発現している細胞(以下、「MRLN発現細胞」と称することがある)であればいずれのものも用いることができるが、例えば、RD細胞(ヒト横紋筋肉腫細胞)があげられる。 In vitro MRLN expression measurement methods for evaluating the inhibition of MRLN expression in cells by the compounds of the present invention can be used in any cells that express MRLN (hereinafter sometimes referred to as "MRLN-expressing cells"), such as RD cells (human rhabdomyosarcoma cells).
本発明化合物をMRLN発現細胞に接触させる方法も特に制限はないが、一般的に核酸を細胞内へ導入するために用いられる方法が挙げられる。具体的には、例えば、リポフェクション法やエレクトロポレーション法、Gymnosis法等である。リポフェクション法またはGymnosis法では、本発明化合物は、例えば、終濃度3、10、30又は100nMで処理することができる。処理時間としては、例えば、48時間があげられる。 The method for contacting the compound of the present invention with MRLN-expressing cells is not particularly limited, and examples include methods commonly used for introducing nucleic acids into cells. Specific examples include lipofection, electroporation, and Gymnosis. In the lipofection or Gymnosis methods, the compound of the present invention can be used at a final concentration of, for example, 3, 10, 30, or 100 nM. The treatment time can be, for example, 48 hours.
MRLNの細胞内におけるmRNAレベルは、当技術分野で既知の様々な方法でアッセイすることができる。具体的には、例えば、ノーザンブロット解析、競合的ポリメラーゼ連鎖反応(PCR)又は定量的リアルタイムPCR等が挙げられる。 The intracellular mRNA level of MRLN can be assayed using various methods known in the art, including, for example, Northern blot analysis, competitive polymerase chain reaction (PCR), or quantitative real-time PCR.
MRLNの細胞内におけるタンパク質レベルは、当技術分野で既知の様々な方法でアッセイすることができる。具体的には、例えば、免疫沈降法、ウェスタンブロット解析(免疫ブロット法)、酵素結合免疫吸着測定法(ELISA)、定量的タンパク質アッセイ、タンパク質活性アッセイ(例えば、カスパーゼ活性アッセイ)、免疫組織化学法、免疫細胞化学法又は蛍光活性化セルソーティング(FACS)等があげられる。 Intracellular protein levels of MRLN can be assayed using a variety of methods known in the art, including, for example, immunoprecipitation, Western blot analysis (immunoblotting), enzyme-linked immunosorbent assay (ELISA), quantitative protein assay, protein activity assay (e.g., caspase activity assay), immunohistochemistry, immunocytochemistry, or fluorescence-activated cell sorting (FACS).
本発明化合物の細胞内におけるMRLN発現の抑制を評価するための、in vivo MRLN発現測定方法は、例えば、MRLNを発現する動物に対して、本発明化合物を投与し、当該細胞において上述のMRLN発現レベルの解析を行う方法が挙げられる。 An in vivo MRLN expression measurement method for evaluating the suppression of MRLN expression in cells by a compound of the present invention involves, for example, administering a compound of the present invention to an animal that expresses MRLN and analyzing the MRLN expression level in the cells.
(2)修飾オリゴヌクレオチドもしくはその医薬的に許容可能な塩またはその医薬的に許容可能な塩を含む医薬組成物
本発明の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩は、医薬組成物として用いることができる。また、コンジュゲート基とコンジュゲートした本発明の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩は、医薬組成物として用いることができる。医薬組成物は、さらに医薬的に許容可能な担体を含んでいてもよい。すなわち、医薬組成物は、本発明の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩と医薬的に許容可能な担体を含んでいてもよい。
(2) Pharmaceutical composition containing a modified oligonucleotide or a pharmaceutically acceptable salt thereof or a pharmaceutically acceptable salt thereof The modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof can be used as a pharmaceutical composition. Furthermore, the modified oligonucleotide of the present invention conjugated with a conjugate group or a pharmaceutically acceptable salt thereof can be used as a pharmaceutical composition. The pharmaceutical composition may further contain a pharmaceutically acceptable carrier. That is, the pharmaceutical composition may contain the modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof and a pharmaceutically acceptable carrier.
医薬的に許容可能な担体としては、医薬組成物の剤型によって適宜選択されるが、例えば、固形製剤における賦形剤、滑沢剤、結合剤及び崩壊剤、あるいは液状製剤における溶剤、溶解補助剤、懸濁化剤、等張化剤、緩衝剤及び無痛化剤等が挙げられる。更に必要に応じ、通常の防腐剤、抗酸化剤、着色剤、甘味剤、吸着剤、湿潤剤等の添加物を適宜、適量用いることもできる。 Pharmaceutically acceptable carriers are selected appropriately depending on the dosage form of the pharmaceutical composition, but include, for example, excipients, lubricants, binders, and disintegrants in solid preparations, and solvents, solubilizers, suspending agents, isotonicity agents, buffers, and soothing agents in liquid preparations. Furthermore, conventional additives such as preservatives, antioxidants, colorants, sweeteners, adsorbents, and wetting agents can also be used as needed in appropriate amounts.
医薬組成物の非経口投与のための剤型は、注射用製剤(例えば、点滴注射剤、静脈注射剤、筋肉注射剤、皮下注射剤、皮内注射剤、脳内投与製剤、脊髄内投与製剤)、外用剤(例えば、軟膏剤、パップ剤、ローション剤)、坐剤吸入剤、眼剤、眼軟膏剤、点鼻剤、点耳剤、リポソーム剤等が挙げられる。非経口投与のための剤型の調製方法は当業者に周知である。 Dosage forms of pharmaceutical compositions for parenteral administration include injectable preparations (e.g., drip infusions, intravenous injections, intramuscular injections, subcutaneous injections, intradermal injections, intracerebral administration preparations, and intraspinal administration preparations), topical preparations (e.g., ointments, poultices, lotions), suppositories, inhalants, eye preparations, eye ointments, nasal drops, ear drops, and liposomes. Methods for preparing dosage forms for parenteral administration are well known to those skilled in the art.
例えば、注射用製剤は、本発明修飾オリゴヌクレオチド又はその医薬的に許容可能な塩を、滅菌水溶液に溶解して調製することができる。滅菌水溶液としては、例えば、滅菌生理食塩水、滅菌水、滅菌リン酸緩衝生理食塩水などがあげられる。また、必要に応じて溶解補助剤、緩衝剤、pH調整剤、等張化剤、無痛化剤、保存剤、安定化剤等を添加することができる。また、用時調製用の凍結乾燥製剤とすることもできる。 For example, an injectable formulation can be prepared by dissolving the modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof in a sterile aqueous solution. Examples of sterile aqueous solutions include sterile saline, sterile water, and sterile phosphate-buffered saline. Furthermore, solubilizers, buffers, pH adjusters, isotonicity agents, soothing agents, preservatives, stabilizers, etc. can be added as needed. It can also be made into a lyophilized formulation for preparation immediately before use.
医薬組成物の経口投与のための剤型は、固体又は液体の剤型、具体的には錠剤、被覆錠剤、丸剤、細粒剤、顆粒剤、散剤、カプセル剤、シロップ剤、乳剤、懸濁剤、注射剤、トローチ剤等が挙げられる。経口投与のための剤型の調製方法は当業者に周知である。 Dosage forms for oral administration of pharmaceutical compositions include solid or liquid dosage forms, specifically tablets, coated tablets, pills, fine granules, granules, powders, capsules, syrups, emulsions, suspensions, injections, and lozenges. Methods for preparing dosage forms for oral administration are well known to those skilled in the art.
本発明の修飾オリゴヌクレオチドもしくはその医薬的に許容可能な塩、またはそれらを含む医薬組成物は、筋疾患の治療または予防のために使用することができる。
筋疾患において、MRLNの発現レベルを抑制することにより、筋小胞体におけるカルシウム取り込み量を増加させることが報告されており、それにより、細胞質におけるカルシウム量の低下および筋収縮力の増大をもたらすことができる。したがって、本発明の修飾オリゴヌクレオチドもしくはその医薬的に許容可能な塩、またはそれらを含む医薬組成物は、細胞質内へのカルシウム異常流入による筋障害や筋細胞死を伴うおよび/または筋収縮力低下を伴う筋疾患の治療または予防に有効である。
The modified oligonucleotides of the present invention or pharmaceutically acceptable salts thereof, or pharmaceutical compositions containing them can be used for the treatment or prevention of muscle diseases.
It has been reported that suppressing the expression level of MRLN in muscle diseases increases calcium uptake in the sarcoplasmic reticulum, thereby reducing the amount of calcium in the cytoplasm and increasing muscle contractility. Therefore, the modified oligonucleotides of the present invention or pharmaceutically acceptable salts thereof, or pharmaceutical compositions containing them, are effective in treating or preventing muscle disorders caused by abnormal calcium influx into the cytoplasm, muscle cell death, and/or muscle contractility reduction.
このような筋疾患としては、具体的には、例えば、筋ジストロフィー、封入体筋炎、筋委縮性側索硬化症、廃用性筋萎縮またはサルコペニアがあげられ、好ましくは筋ジストロフィーがあげられる。筋ジストロフィーとしては、具体的には、例えば、デュシェンヌ型筋ジストロフィー、ベッカー型筋ジストロフィーまたはサルコグリカノパチーがあげられ、好ましくはデュシェンヌ型筋ジストロフィーまたはサルコグリカノパチーがあげられ、より好ましくはデュシェンヌ型筋ジストロフィーがあげられる。なお、サルコグリカノパチーはLGMD2C、LGMD2D、LGMD2E、LGMD2Fを含む。 Specific examples of such muscle diseases include muscular dystrophy, inclusion body myositis, amyotrophic lateral sclerosis, disuse muscle atrophy, and sarcopenia, with muscular dystrophy being preferred. Specific examples of muscular dystrophy include Duchenne muscular dystrophy, Becker muscular dystrophy, and sarcoglycanopathy, with Duchenne muscular dystrophy and sarcoglycanopathy being preferred, and Duchenne muscular dystrophy being more preferred. Sarcoglycanopathy includes LGMD2C, LGMD2D, LGMD2E, and LGMD2F.
特に筋ジストロフィーにおいては、1)ジストロフィン-糖タンパク質複合体の欠損によって膜の透過性が亢進し、それによって細胞質内カルシウム量が増加し、筋障害や筋細胞死が起こる、2)ジストロフィン-糖タンパク質複合体の欠損によってnNOS(neuronal nitric oxide synthase)が減少して細胞質でiNOS(inducible nitric oxide synthase)が増加し、リアノジン受容体がニトロシル化され、筋小胞体内カルシウムが減少して筋収縮力が低下する、という2つのメカニズムが知られている。本発明の修飾オリゴヌクレオチドもしくはその医薬的に許容可能な塩、またはそれらを含む医薬組成物は、細胞質内カルシウム量を減少させ、かつ、筋小胞体内のカルシウム取り込みを増加させることで、筋ジストロフィーにおける筋障害や筋細胞死を抑制および/または筋収縮力を維持・回復させることができる。 In particular, in muscular dystrophies, two mechanisms are known: 1) deficiency of the dystrophin-glycoprotein complex increases membrane permeability, which in turn increases the amount of calcium in the cytoplasm, leading to muscle damage and muscle cell death; and 2) deficiency of the dystrophin-glycoprotein complex reduces nNOS (neuronal nitric oxide synthase), which increases iNOS (inducible nitric oxide synthase) in the cytoplasm, nitrosylation of ryanodine receptors, which reduces calcium in the sarcoplasmic reticulum, and reduces muscle contractility. The modified oligonucleotides or pharmaceutically acceptable salts thereof, or pharmaceutical compositions containing them, of the present invention reduce the amount of calcium in the cytoplasm and increase calcium uptake into the sarcoplasmic reticulum, thereby preventing muscle damage and muscle cell death in muscular dystrophies and/or maintaining or restoring muscle contractility.
したがって、本発明は、
本発明の修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩を含む、筋疾患の治療または予防のための医薬組成物;
有効量の本発明の修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩(又は、該修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩を含む医薬組成物)を対象に投与する工程を含む、筋疾患の治療または予防方法;
筋疾患の治療または予防用医薬組成物の製造における、本発明の修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩(又は、該修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩を含む医薬組成物)の使用;
筋疾患の治療または予防用医薬組成物の製造に使用するための、本発明の修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩(又は、該修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩を含む医薬組成物);
筋疾患の治療または予防のための、本発明の修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩(又は、該修飾オリゴヌクレオチドまたはその医薬的に許容可能な塩を含む医薬組成物)の使用である。
Therefore, the present invention provides
a pharmaceutical composition for treating or preventing a muscular disease, comprising the modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof;
A method for treating or preventing a muscular disease, comprising the step of administering to a subject an effective amount of the modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof (or a pharmaceutical composition comprising the modified oligonucleotide or a pharmaceutically acceptable salt thereof);
Use of a modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof (or a pharmaceutical composition comprising the modified oligonucleotide or a pharmaceutically acceptable salt thereof) in the manufacture of a pharmaceutical composition for treating or preventing a muscular disease;
A modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof for use in the manufacture of a pharmaceutical composition for treating or preventing a muscular disease (or a pharmaceutical composition comprising the modified oligonucleotide or a pharmaceutically acceptable salt thereof);
The present invention relates to use of a modified oligonucleotide of the present invention or a pharmaceutically acceptable salt thereof (or a pharmaceutical composition comprising the modified oligonucleotide or a pharmaceutically acceptable salt thereof) for the treatment or prevention of a muscle disease.
投与対象である「対象」は、ヒト、又はヒトを除く哺乳動物(例えば、マウス、モルモット、ハムスター、ラット、ネズミ、ウサギ、ブタ、ヒツジ、ヤギ、ウシ、ウマ、ネコ、イヌ、マーモセット、サル、又はチンパンジー等の1種以上)を含む。 The "subject" to which the drug is administered includes humans and non-human mammals (e.g., one or more of the following: mice, guinea pigs, hamsters, rats, mice, rabbits, pigs, sheep, goats, cows, horses, cats, dogs, marmosets, monkeys, chimpanzees, etc.).
本発明の修飾オリゴヌクレオチドもしくはその医薬的に許容可能な塩、またはそれらを含む医薬組成物の投与形態としては、例えば、経口投与、静脈内投与又は動脈内投与などの全身投与があげられる。本発明の修飾オリゴヌクレオチドもしくはその医薬的に許容可能な塩、またはそれらを含む医薬組成物の投与量は、使用目的、疾患の重篤度、患者の年齢、体重、性別等により適宜変更し得るが、例えば、修飾オリゴヌクレオチド量として、0.1ng~100mg/kg/日があげられる。 The dosage of the modified oligonucleotide or pharmaceutically acceptable salt thereof of the present invention, or a pharmaceutical composition containing the same, can be systemically administered, for example, orally, intravenously, or intra-arterially. The dosage of the modified oligonucleotide or pharmaceutically acceptable salt thereof of the present invention, or a pharmaceutical composition containing the same, can be varied as appropriate depending on the purpose of use, severity of the disease, and the age, weight, and sex of the patient, but can be, for example, 0.1 ng to 100 mg/kg/day of the modified oligonucleotide.
本発明の修飾オリゴヌクレオチドもしくはその医薬的に許容可能な塩、またはそれらを含む医薬組成物は、単独或いは1以上の他の薬剤と組合せて使用することができる。 The modified oligonucleotides of the present invention or pharmaceutically acceptable salts thereof, or pharmaceutical compositions containing them, can be used alone or in combination with one or more other drugs.
非限定開示及び参照による組み込み
本明細書に記載のある種の化合物、組成物及び方法は、ある種の実施態様に従って特異的に記載されているが、以下の実施例は、本明細書に記載の化合物を例示する役割を果たすにすぎず、これを限定することを意図しない。本出願に記載される参考文献のそれぞれは、参照によりその全体が本明細書に組み込まれる。
NON-LIMITING DISCLOSURE AND INCORPORATION BY REFERENCE While certain compounds, compositions, and methods described herein are specifically described according to certain embodiments, the following examples serve only to illustrate the compounds described herein and are not intended to be limiting thereof. Each of the references described in this application is incorporated herein by reference in its entirety.
実施例1
修飾オリゴヌクレオチドの調製
修飾オリゴヌクレオチドは、ALNA[Ms]アミダイト国際公開WO2020/100826号に記載された方法により合成)を用いて、一般的なオリゴ核酸の固相合成法に従い株式会社ニッポンジーン社/株式会社ニッポンジーンマテリアル社により合成および精製された。なお、化合物の同定は高速液体クロマト質量分析計により行った。
Example 1
Preparation of Modified Oligonucleotides Modified oligonucleotides were synthesized and purified by Nippon Gene Co., Ltd./Nippon Gene Material Co., Ltd. using ALNA[Ms] amidite (synthesized by the method described in International Publication WO 2020/100826) according to a general solid-phase synthesis method for oligonucleotides. The compounds were identified using a high-performance liquid chromatograph mass spectrometer.
合成した修飾オリゴヌクレオチド化合物を表1-1~1-6(16残基の修飾オリゴヌクレオチド)に示す。化合物の表記は各ヌクレオシドが1文字で表され、ヌクレオシド間結合はホスホロチオエート結合である。各ヌクレオシドは以下を示す:A=ALNA[Ms]の糖部分を修飾糖として含むアデノシン、T=ALNA[Ms]の糖部分を修飾糖として含むチミジン、G=ALNA[Ms]の糖部分を修飾糖として含むグアノシン、C=ALNA[Ms]の糖部分を修飾糖として含み、5-メチルシトシンを修飾塩基として含む5-メチルシチジン、a=2’-デオキシリボースアデノシン、t=2’-デオキシリボースチミジン、g=2’-デオキシリボースグアノシン、c=2’-デオキシリボースシチジン。
premature標的開始位置は、修飾オリゴヌクレオチドのMRLN pre-mRNA5’標的部位(修飾オリゴヌクレオチドの3’末端に対応する配列表の配列番号1の位置)を示し、premature標的終了位置は、修飾オリゴヌクレオチドのMRLNpre-mRNA3’標的部位(修飾オリゴヌクレオチドの5’末端に対応する配列表の配列番号1の位置)を示す。mature標的開始位置は、修飾オリゴヌクレオチドのMRLNmRNA5’標的部位(修飾オリゴヌクレオチドの3’末端に対応する配列表の配列番号2の位置)を示し、mature標的終了位置は、修飾オリゴヌクレオチドのMRLNmRNA3’標的部位(修飾オリゴヌクレオチドの5’末端に対応する配列表の配列番号2の位置)を示す。
The synthesized modified oligonucleotide compounds are shown in Tables 1-1 to 1-6 (16-residue modified oligonucleotides). Each nucleoside is represented by a single letter, and the internucleoside bond is a phosphorothioate bond. Each nucleoside is represented as follows: A = adenosine containing the sugar moiety of ALNA[Ms] as a modified sugar; T = thymidine containing the sugar moiety of ALNA[Ms] as a modified sugar; G = guanosine containing the sugar moiety of ALNA[Ms] as a modified sugar; C = 5-methylcytidine containing the sugar moiety of ALNA[Ms] as a modified sugar and 5-methylcytosine as a modified base; a = 2'-deoxyribose adenosine; t = 2'-deoxyribose thymidine; g = 2'-deoxyribose guanosine; c = 2'-deoxyribose cytidine.
The premature target start position indicates the MRLN pre-mRNA 5' target site of the modified oligonucleotide (the position of SEQ ID NO: 1 in the Sequence Listing corresponding to the 3' end of the modified oligonucleotide), and the premature target end position indicates the MRLN pre-mRNA 3' target site of the modified oligonucleotide (the position of SEQ ID NO: 1 in the Sequence Listing corresponding to the 5' end of the modified oligonucleotide). The mature target start position indicates the MRLN mRNA 5' target site of the modified oligonucleotide (the position of SEQ ID NO: 2 in the Sequence Listing corresponding to the 3' end of the modified oligonucleotide), and the mature target end position indicates the MRLN mRNA 3' target site of the modified oligonucleotide (the position of SEQ ID NO: 2 in the Sequence Listing corresponding to the 5' end of the modified oligonucleotide).
実施例2
In vitro MRLN発現比試験(Lipofection法)
実施例1で合成した修飾オリゴヌクレオチドをlipofection試薬と混合し、5μL/wellずつ384plateに添加した。その上から10%血清含有培地に懸濁したRD細胞を5×103cells/45μL/wellで播種し、CO2インキュベーターで培養した。48時間後、細胞から修飾オリゴヌクレオチド含有培地を除去し、リン酸緩衝生理食塩水(Phosphate-buffered saline: PBS)でWashを行った。その後、SuperPrep Cell Lysis & RT Kit for qPCR(Toyobo)を用い、RNAを含む細胞ライセートの調製と、ライセートからのRT反応を行い、鋳型cDNAの合成を行った。このcDNAを用いてリアルタイムPCRを行い、MRLNのmRNA発現量を定量した。MRLN発現比は、修飾オリゴヌクレオチドを終濃度100nmol/L添加した細胞におけるMRLN mRNAレベルを、修飾オリゴヌクレオチドを添加していない細胞におけるMRLN mRNAレベルと比較して百分率で算出し、表1-1~1-6に示した。
Example 2
In vitro MRLN expression ratio test (Lipofection method)
The modified oligonucleotides synthesized in Example 1 were mixed with lipofection reagent and added to a 384-well plate at 5 μL/well. RD cells suspended in 10% serum-containing medium were seeded on top of the mixture at 5 x 10 3 cells/45 μL/well and cultured in a CO 2 incubator. After 48 hours, the modified oligonucleotide-containing medium was removed from the cells and washed with phosphate-buffered saline (PBS). Subsequently, a SuperPrep Cell Lysis & RT Kit for qPCR (Toyobo) was used to prepare a cell lysate containing RNA, and an RT reaction was performed from the lysate to synthesize template cDNA. Real-time PCR was performed using this cDNA to quantify MRLN mRNA expression levels. The MRLN expression ratio was calculated as a percentage by comparing the MRLN mRNA level in cells to which the modified oligonucleotide was added at a final concentration of 100 nmol/L with the MRLN mRNA level in cells to which the modified oligonucleotide was not added, and is shown in Tables 1-1 to 1-6.
実施例3
In vitro MRLN発現比試験(Gymnosis法)
2%血清含有培地に懸濁したRD細胞を5×103cells/45μL/wellで384plateに播種し、CO2インキュベーターで培養した。72時間後、同培地で培地交換した後、実施例1で合成した修飾オリゴヌクレオチドを5μL/wellずつ添加し、CO2インキュベーターで培養した。72時間後、細胞から修飾オリゴヌクレオチド含有培地を除去し、リン酸緩衝生理食塩水(Phosphate-buffered saline: PBS)でWashを行った。その後、SuperPrep Cell Lysis & RT Kit for qPCR(Toyobo)を用い、RNAを含む細胞ライセートの調製と、ライセートからのRT反応を行い、鋳型cDNAの合成を行った。このcDNAを用いてリアルタイムPCRを行い、MRLNのmRNA発現量を定量した。MRLN発現比は、修飾オリゴヌクレオチドを終濃度1000nmol/L添加した細胞におけるMRLN mRNAレベルを、修飾オリゴヌクレオチドを添加していない細胞におけるMRLN mRNAレベルと比較して百分率で算出し、表1-1~1-6に示した。
Example 3
In vitro MRLN expression ratio test (Gymnosis method)
RD cells suspended in 2% serum-containing medium were seeded at 5 x 10 cells/45 μL/well in a 384-well plate and cultured in a CO2 incubator. After 72 hours, the medium was replaced with the same medium, and the modified oligonucleotides synthesized in Example 1 were added at 5 μL/well, followed by culture in a CO2 incubator. After 72 hours, the modified oligonucleotide-containing medium was removed from the cells and washed with phosphate-buffered saline (PBS). Subsequently, a SuperPrep Cell Lysis & RT Kit for qPCR (Toyobo) was used to prepare a cell lysate containing RNA, and an RT reaction was performed from the lysate to synthesize template cDNA. Real-time PCR was performed using this cDNA to quantify MRLN mRNA expression levels. The MRLN expression ratio was calculated as a percentage by comparing the MRLN mRNA level in cells to which the modified oligonucleotide was added at a final concentration of 1000 nmol/L with the MRLN mRNA level in cells to which the modified oligonucleotide was not added, and is shown in Tables 1-1 to 1-6.
Claims (25)
のいずれかの塩基配列、または、該塩基配列を含む17もしくは18個の連続する塩基から構成される塩基配列であり、前記修飾オリゴヌクレオチドの全長の塩基配列が、配列番号2の塩基配列における等長部分に対して100%相補的な塩基配列からなる、修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。 A modified oligonucleotide or a pharmaceutically acceptable salt thereof having an activity of suppressing Myoregulin expression, wherein the base sequence of the modified oligonucleotide is SEQ ID NO: 273 or 280 in the Sequence Listing.
A modified oligonucleotide or a pharmaceutically acceptable salt thereof, which is any of the base sequences shown below, or a base sequence consisting of 17 or 18 consecutive bases including said base sequence, and wherein the full-length base sequence of the modified oligonucleotide is a base sequence that is 100% complementary to the equal-length portion of the base sequence of SEQ ID NO: 2.
1)ギャップセグメント、
2)5’ウイングセグメント及び
3)3’ウイングセグメント、を含み、
前記ギャップセグメントが、前記5’ウイングセグメントと前記3’ウイングセグメントとの間に位置付けられ、
前記5’ウイングセグメント及び3’ウイングセグメントを構成するヌクレオシドの糖部分が全て修飾糖である、請求項1~6のいずれか1項に記載の修飾オリゴヌクレオチド又はその医薬的に許容可能な塩。 the modified oligonucleotide is
1) gap segments,
2) a 5' wing segment and 3) a 3' wing segment;
the gap segment is positioned between the 5' wing segment and the 3' wing segment;
The modified oligonucleotide or a pharmaceutically acceptable salt thereof according to any one of claims 1 to 6, wherein all of the sugar moieties of the nucleosides constituting the 5' wing segment and the 3' wing segment are modified sugars.
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| WO2017047816A1 (en) * | 2015-09-18 | 2017-03-23 | 田辺三菱製薬株式会社 | Crosslinked nucleic acid guna, method for producing same, and intermediate compound |
| JP2018511307A (en) * | 2015-04-03 | 2018-04-26 | アイオーニス ファーマシューティカルズ, インコーポレーテッドIonis Pharmaceuticals,Inc. | Compounds and methods for modulating TMPRSS6 expression |
| WO2020100826A1 (en) * | 2018-11-12 | 2020-05-22 | 田辺三菱製薬株式会社 | Crosslinked artificial nucleic acid alna |
| WO2022014703A1 (en) * | 2020-07-17 | 2022-01-20 | 田辺三菱製薬株式会社 | Agent for preventing or treating muscular disease |
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| JP2016530882A (en) * | 2013-08-09 | 2016-10-06 | アイオーニス ファーマシューティカルズ, インコーポレーテッドIonis Pharmaceuticals,Inc. | Compounds and methods for modulating the expression of myotonic dystrophy protein kinase (DMPK) |
| JP2018511307A (en) * | 2015-04-03 | 2018-04-26 | アイオーニス ファーマシューティカルズ, インコーポレーテッドIonis Pharmaceuticals,Inc. | Compounds and methods for modulating TMPRSS6 expression |
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| WO2022014703A1 (en) * | 2020-07-17 | 2022-01-20 | 田辺三菱製薬株式会社 | Agent for preventing or treating muscular disease |
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