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WO2025137391A1 - Bifunctional compounds containing pyrido[2,3-d]pyrimidin-7(8h)-one derivatives for degrading cyclin-dependent kinase 4 via ubiquitin proteasome pathway - Google Patents

Bifunctional compounds containing pyrido[2,3-d]pyrimidin-7(8h)-one derivatives for degrading cyclin-dependent kinase 4 via ubiquitin proteasome pathway Download PDF

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WO2025137391A1
WO2025137391A1 PCT/US2024/061180 US2024061180W WO2025137391A1 WO 2025137391 A1 WO2025137391 A1 WO 2025137391A1 US 2024061180 W US2024061180 W US 2024061180W WO 2025137391 A1 WO2025137391 A1 WO 2025137391A1
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compound
pharmaceutically acceptable
acceptable salt
hydrogen
alk
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Zhiyong Yu
Yan Lou
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Nikang Therapeutics Inc
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Nikang Therapeutics Inc
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K47/00Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
    • A61K47/50Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
    • A61K47/51Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
    • A61K47/54Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
    • A61K47/55Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound the modifying agent being also a pharmacologically or therapeutically active agent, i.e. the entire conjugate being a codrug, i.e. a dimer, oligomer or polymer of pharmacologically or therapeutically active compounds
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems

Definitions

  • the present disclosure provides certain bifunctional compounds containing pyrido[2,3-d]- pyrimidin-7(8h)-one derivatives that cause degradation of Cyclin-dependent kinase 4 (CDK4) via ubiquitin proteasome pathway and are therefore useful for the treatment of diseases mediated by CDK4. Also provided are pharmaceutical compositions containing such compounds and processes for preparing such compounds.
  • Cyclin-dependent kinases are essential cellular serine/threonine kinases that play an important role in orchestrating signaling events, such as DNA replication and protein synthesis, to ensure faithful eukaryotic cell division and proliferation.
  • the regulation of CDK activity is tightly controlled by the fluctuating levels of various cyclins, which form heterodimeric complexes with CDKs to activate them.
  • CDKl/Cyclin B, CDK2/Cyclin E, CDK2/Cyclin A, CDK4/Cyclin D, CDK6/Cyclin D complexes are well known to be vital regulators of cell cycle progression.
  • CDKs are involved in regulating gene transcription, DNA repair, differentiation, and apoptosis (see Morgan, D. O. Annu. Rev. Cell. Dev. Biol. (1997) 13: 261-291).
  • mitogenic signaling upregulates D-type cyclins, which directly bind and activate CDK4/6.
  • Active CDK4/6-cyclin D complexes partially phosphorylate Rb, disrupting the Rb/E2F interaction and de-repressing E2F activity, leading to upregulation of cyclin E, a CDK2 activator.
  • Cdk2-cyclin E further hyperphosphorylates Rb, releasing E2F to transcribe genes required for S-phase entry.
  • CDKl-Cyclin A and CDKl-Cyclin B complexes are activated in late S and G2 phases to drive the transition into and completion of mitosis, respectively (Katsuno et al., 2009; Lindqvist et al., 2009; Lohka et al., 1988).
  • CDK-cyclin complexes Due to their crucial roles in regulating cell cycle and other essential cellular processes, increased activity or temporally abnormal activation of CDKs has been shown to promote tumorigenesis and disease progression (Cordon-Cardo C. Am. J. Pathol. (1995) 147:545-560; Karp JE, Broder S. Nat. Med. (1995) 1 :309-320; Hall M, Peters G. Adv. Cancer Res. (1996) 68:67-108). Genetic changes in CDK-cyclin complexes and the proteins that regulate them are widespread in various cancers and are often associated with poor clinical outcomes.
  • Common alterations include amplifications/overexpression of cyclin D, cyclin E, CDK4, and CDK6; loss of Rb; deficiency in CDK inhibitory regulators such as pl 6, p21, p27, and loss-of-function mutations in FBXW7, a component of SCF Fbw7 ubiquitin E3 ligase responsible for cyclin E degradation. (Smalley et al. Cancer Res. (2008) 68: 5743-52).
  • CDK inhibitors for therapeutic purposes.
  • selective reversible inhibitors of CDK4 and CDK6 e.g., palbociclib, riboci clib, and abemaciclib have revolutionized the therapeutic management for hormone receptor-positive (HR+) metastatic breast cancer (MBC).
  • HR+ hormone receptor-positive metastatic breast cancer
  • CDK4/6 inhibitors are also investigating these CDK4/6 inhibitors as single agents or in combination with other therapeutics for various cancers.
  • CDK4/6 inhibitors Despite their significant clinical efficacy in ER-positive metastatic breast cancer, CDK4/6 inhibitors have limitations. CDK4/6 inhibitors palbociclib and ribociclib exhibit relatively high hematological toxicity, primarily neutropenia. CDK6 is highly expressed in the blood system and plays a role in regulating the growth of hematopoietic cells. Therefore, it is generally believed that the inhibition of CDK6 leads to neutropenia as breast cancer cells mainly depend on CDK4 for proliferation. Abemaciclib exhibits weaker inhibition of CDK6 than CDK4, resulting in lower hematological toxicity.
  • PROTACs are bifunctional molecules comprised of target protein-recruitment moiety and a ligand for E3 ligase, connected by a biocompatible linker.
  • PROTACs bring the protein of interest and the E3 ligase into close proximity and induce ubiquitination and subsequent degradation of the target protein by proteasome.
  • PROTACs display several unique and attractive features that make them desirable drug candidates. For example, PROTACs have been shown to be more selective than their inhibitor counterparts, potentially reducing off-target toxicity.
  • PROTACs can perform multiple rounds of target ubiquitination and degradation.
  • PROTACs Due to this catalytic mode of action, PROTACs can function at sub-stoichiometric receptor occupancies.
  • the E3 ligases used in PROTACs mainly include cereblon (CRBN), Von Hippel-Lindau-containing complex (VHL), inhibitor of apoptosis protein (LAP), and mouse double minute 2 (MDM2).
  • PROTACs that could selectively recruit CDK4 to a ubiquitin ligase, and thereby causing ubiquitylation and proteasomal degradation CDK4 are desirable.
  • the present disclosure fulfills this and related needs.
  • R 1 is hydrogen, linear alkyl, deuterated alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, cycloalkylalkyl, arylalkyl, heteroarylalkyl, or heterocyclylalkyl;
  • R 2 is hydroxyalkyl, alkoxyalkyl, or haloalkoxyalkyl, provided that when R 2 is hydroxyalkyl, then R 1 is haloalkyl;
  • R 2a is hydrogen or deuterium
  • Hy is cycloalkylene, arylene, heteroarylene, heterocyclylene, bicyclic heterocyclylene, spiro heterocyclylene, bridged heterocyclylene, or fused heterocyclylene, where each of the aforementioned rings is substituted with R a , R b , and R c independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano;
  • Degron is an E3 ubiquitin ligase ligand selected from: (a) a group of formula (i):
  • Y a is CH or N
  • Z a is a bond, -CH2-, -NH-, -O-, or -NHC(O)- where NH of -NHC(O)- is attached to Y a ;
  • ring A is a group of formula (a) or (b): where:
  • M is -O- or -NR 6 -;
  • R 6 is hydrogen or alkyl
  • ring B is phenylene, cyclylaminylene, a 5- or 6-membered monocyclic heteroarylene, or a 9- or 10-membered fused bicyclic heteroarylene, wherein one to three ring atoms of each heteroarylene ring are heteroatoms independently selected from nitrogen, oxygen, or sulfur and further wherein the phenylene, cyclylaminylene, and each heteroarylene are independently substituted with R ee and R ff independently selected from hydrogen, alkyl, cycloalkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano; and Z is -0-, -NR 3 - (where R 3 is hydrogen or alkyl), cycloalkylene, phenylene, monocyclic heteroarylene, unsaturated heterocyclylene, heterocyclylene, bridged heterocyclylene, or spiro heterocyclylene and where each ring is substituted with R
  • Ar is phenylene, monocyclic heteroarylene, heterocyclylene, bridged heterocyclylene, or spiro heterocyclylene, where each of the aforementioned ring is substituted with R>, R k , and R m independently selected from hydrogen, deuterium, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano; or a pharmaceutically acceptable salt thereof.
  • a pharmaceutical composition comprising a compound of Formula (I) (or any of the embodiments thereof described herein), or a pharmaceutically acceptable salt thereof; and a pharmaceutically acceptable excipient.
  • a method of treating a disease mediated by CDK4 in a patient preferably the patient is in need of such treatment, which method comprises administering to the patient, preferably a patient in need of such treatment, a therapeutically effective amount of a compound of Formula (I) (or any of the embodiments thereof described herein below), or a pharmaceutically acceptable salt thereof; or a pharmaceutical composition thereof disclosed herein.
  • the disease is cancer.
  • the disease is cancer selected from lung cancer (e.g., adenocarcinoma, small cell lung cancer, non-small cell lung carcinomas, parvicellular and non-parvicellular carcinoma, bronchial carcinoma, bronchial adenoma, and/or pleuropulmonary blastoma), skin cancer (e.g., melanoma, squamous cell carcinoma, Kaposi sarcoma, and/or Merkel cell skin cancer), bladder cancer, breast cancer, cervical cancer, colorectal cancer, cancer of the small intestine, colon cancer, rectal cancer, cancer of the anus, endometrial cancer, gastric cancer, head and neck cancer (e.g., cancers of the larynx, hypopharynx, nasopharynx, oropharynx, lips, and/or mouth), liver cancer (e.g., hepatocellular carcinoma and/or cholangiocellular carcinoma), ovarian cancer, prostate cancer, testicular
  • the cancers are those that are resistant to CDK4/6 inhibitors through CDK4-mediated mechanisms e.g., breast cancer.
  • the disease is an autoimmune disease or a condition associated with an autoimmune disease, which method comprises administering to the patient, preferably a patient in need of such treatment, a therapeutically effective amount of a compound of Formula (I) (or any of the embodiments thereof described herein below), or a pharmaceutically acceptable salt thereof.
  • the autoimmune disease or condition associated with an autoimmune disease is selected from rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), primary Sjogren’s syndrome (pSS), multiple sclerosis (MS), Crohn’s disease (CD), uveitis, pemphigus vulgaris, and sepsis.
  • RA rheumatoid arthritis
  • SLE systemic lupus erythematosus
  • pSS primary Sjogren’s syndrome
  • MS multiple sclerosis
  • Crohn’s disease CD
  • uveitis pemphigus vulgaris
  • sepsis sepsis
  • a compound of Formula (I) (or any of the embodiments thereof described herein), or a pharmaceutically acceptable salt thereof for use in therapy.
  • the compound of Formula (I) (or any embodiments thereof disclosed herein), or a pharmaceutically acceptable salt thereof is for use in the treatment of one or more of diseases disclosed in the third aspect above.
  • a compound of Formula (I) (or any of the embodiments thereof described herein), or a pharmaceutically acceptable salt thereof, in the manufacture of a medicament for treating a disease in a patient in which the activity of CDK4 contributes to the pathology and/or symptoms of the disease.
  • the disease is one or more of diseases disclosed in the third aspect above.
  • a method of degrading CDK4 in a cell via ubiquitin proteasome pathway which method comprises contacting the cell with a compound of Formula (I) (or embodiments thereof as disclosed herein).
  • the CDK4 is degraded in the cell in vitro.
  • the CDK4 is degraded in the cell in vivo.
  • the CDK4 is degraded in a cell of a patient.
  • the compound of any one of embodiments Al and A10 to Al 6, or a pharmaceutically acceptable salt thereof is wherein R 1 is cyanomethyl, cyanoethyl, hydroxyethyl, methoxyethyl, cyclopropylmethyl, benzyl, 4-pyridylmethyl, or 4-piperidylmethyl.
  • Al 8 the compound of any one of embodiments Al and A10 to A17, or a pharmaceutically acceptable salt thereof, is wherein R 1 is cyanomethyl or methoxyethyl.
  • the compound of embodiment Al, A4, A6, or A7, or a pharmaceutically acceptable salt thereof is wherein R 2 is hydroxyalkyl.
  • the compound of any one of embodiments Al to Al 8, or a pharmaceutically acceptable salt thereof is wherein R 2 is alkoxyalkyl or haloalkoxy alkyl.
  • the compound of any one of embodiments Al to Al 8 and A20, or a pharmaceutically acceptable salt thereof, is wherein R 2 is haloalkoxyalkyl.
  • the compound of any one of embodiments Al to Al 8, and A20, or a pharmaceutically acceptable salt thereof, is wherein R 2 is alkoxyalkyl.
  • the compound of any one of embodiments Al to A22, or a pharmaceutically acceptable salt thereof is wherein R 2 is hydroxymethyl, hydroxy ethyl, methoxymethyl, methoxyethyl, methoxypropyl, ethoxymethyl, ethoxyethyl, difluoromethoxymethyl, trifluoromethoxymethyl, 2,2-difluoroethoxymethyl, or 2,2,2- tri fluoroethoxymethyl .
  • the compound of any one of embodiments Al to Al 8 and A20 to A22a, or a pharmaceutically acceptable salt thereof is wherein R 2 is ethoxyethyl, difluoromethoxymethyl, trifluoromethoxymethyl, 2,2-difluoroethoxymethyl, or 2,2,2- tri fluoroethoxymethyl .
  • the compound of any one of embodiments Al to A22b, or a pharmaceutically acceptable salt thereof, is wherein R 2a is hydrogen.
  • the compound of any one of embodiments Al to A22b, or a pharmaceutically acceptable salt thereof, is wherein R 2a is deuterium.
  • the compound of any one of embodiments Al to A24, or a pharmaceutically acceptable salt thereof is wherein Hy is heterocyclylene, phenylene, spiro heterocyclylene, bridged heterocyclylene, or cycloalkylene, wherein each of the aforementioned rings is substituted with R a , R b , and R c where R a and R b are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and R c is hydrogen.
  • Hy is heterocyclylene, phenylene, spiro heterocyclylene, bridged heterocyclylene, or cycloalkylene, wherein each of the aforementioned rings is substituted with R a , R b , and R c where R a and R b are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and R c is
  • the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof is wherein Hy is heterocyclylene substituted with R a , R b , and R c where R a and R b are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and R c is hydrogen.
  • the compound of any one of embodiments Al to A26, or a pharmaceutically acceptable salt thereof is wherein the heterocyclylene of Hy is pyrrolidin-1,3- diyl, or piperidin-l,4-diyl, each ring being substituted with R a , R b , and R c where R a and R b are independently hydrogen, deuterium, methyl, fluoro, methoxy, or hydroxy, R c is hydrogen, and -SO2- is attached to the nitrogen atom of the piperidin-l,4-diyl or pyrrolidin-l,3-diyl ring of
  • the compound of any one of embodiments Al to K 1 or a pharmaceutically acceptable salt thereof is wherein the heterocyclylene of Hy is: where the N atom of the pyrrolidin- 1,3 -diyl or piperidin-l,4-diyl rings is attached to -SO2-
  • the compound of any one of embodiments Al to A28, or a pharmaceutically acceptable salt thereof is wherein the heterocyclylene of Hy is: where the N atom of the pyrrolidin- 1,3 -diyl or piperidin-l,4-diyl rings is attached to -SO2-.
  • the compound of any one of embodiments Al to A29, or a pharmaceutically acceptable salt thereof is wherein the heterocyclylene of Hy is: where the N atom of the piperidin-l,4-diyl ring is attached to -SO2-.
  • the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof is wherein Hy is bridged heterocyclylene substituted with R a , R b , and R c where R c is hydrogen.
  • the compound of any one of embodiments Al to A25 and A30, or a pharmaceutically acceptable salt thereof is wherein the bridged heterocyclylene of Hy is a ring of formula: where each ring is substituted with R a , R b , and R c where R c is hydrogen, and the nitrogen atom of each ring is attached to -SO2-.
  • the compound of embodiment A30 or A31, or a pharmaceutically acceptable salt thereof is wherein R a and R b are independently hydrogen, deuterium, methyl, fluoro, methoxy, or hydroxy.
  • the compound of embodiment A30, A31 or A32, or a pharmaceutically acceptable salt thereof is wherein R b is hydrogen.
  • the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof is wherein Hy is cycloalkylene substituted with R a , R b , and R c where R a is deuterium, methyl, fluoro, methoxy, or hydroxy and R b and R c are hydrogen.
  • the compound of any one of embodiments Al to A25 and A34, or a pharmaceutically acceptable salt thereof is wherein the cycloalkylene of Hy is cyclohexylene.
  • the compound of any one of embodiments Al to A25, A34, and A35, or a pharmaceutically acceptable salt thereof is wherein the cycloalkylene of Hy is denotes bond of -SO2-.
  • the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof is wherein Hy is arylene wherein the arylene is phenylene substituted with R a , R b , and R c where R a and R b are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and R c is hydrogen.
  • the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof is wherein Hy is spiro heterocyclylene (preferably, 2-azaspiro[3.3]heptan-2-yl) substituted with R a , R b , and R c where R a and R b are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and R c is hydrogen.
  • Hy is spiro heterocyclylene (preferably, 2-azaspiro[3.3]heptan-2-yl) substituted with R a , R b , and R c where R a and R b are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and R c is hydrogen.
  • Hy is spiro heterocyclylene (preferably, 2-azaspiro[3.3]heptan-2-yl) substitute
  • the compound of embodiment A37, or a pharmaceutically acceptable salt thereof is wherein the phenylene of Hy is 1,4-phenylene according to structure denotes bond to -SCh-where R a is hydrogen, fluoro, methyl or methoxy and R b is hydrogen.
  • the compound of any one of embodiments Al to A24, or a pharmaceutically acceptable salt thereof is wherein Hy is fused heterocyclylene substituted with R a , R b , and R c where R a and R b are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and R c is hydrogen.
  • the compound of any one of embodiments Al to A24, or a pharmaceutically acceptable salt thereof is wherein Hy is bicyclic heterocyclylene substituted with R a , R b , and R c where R a and R b are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and R c is hydrogen.
  • the compound of any one of embodiments Al to A39b, or a pharmaceutically acceptable salt thereof is wherein the Degron is an E3 ubiquitin ligase ligand of formula (i):
  • the compound of any one of embodiments Al to A40, or a pharmaceutically acceptable salt thereof is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is a group of formula (a):
  • the compound of any one of embodiments Al to A41, or a pharmaceutically acceptable salt thereof is wherein R 4 and R 5 are independently hydrogen or alkyl.
  • R 4 and R 5 are independently hydrogen or alkyl.
  • the compound of any one of embodiments Al to 42, or a pharmaceutically acceptable salt thereof is wherein R 4 is hydrogen and R 5 is methyl.
  • R 4 and R 5 together with the carbon to which they are attached form >C 0.
  • the compound of embodiments Al to A40, or a pharmaceutically acceptable salt thereof is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is a group of formula (b):
  • the compound of any one of embodiments Al to A40 and A46a, or a pharmaceutically acceptable salt thereof is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is a group of formula (b):
  • the compound of any one of embodiments Al to A48, or a pharmaceutically acceptable salt thereof is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is: A50.
  • the compound of any one of embodiments Al to A49, or a pharmaceutically acceptable salt thereof is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is:
  • the compound of any one of embodiments Al to A54, and A58 to A60, or a pharmaceutically acceptable salt thereof is wherein R aa , R bb , R cc , and R dd are independently selected from hydrogen, trifluoromethyl, and difluoromethyl, unless stated otherwise.
  • the compound of any one of embodiments Al to A54, A58, and A60, or a pharmaceutically acceptable salt thereof is wherein R aa , R bb , R cc , and R dd are independently selected from hydrogen and trifluoromethoxy, unless stated otherwise.
  • the compound of any one of embodiments Al to A54, and A58 to A60, or a pharmaceutically acceptable salt thereof is wherein R aa , R bb , R cc , and R dd are independently selected from hydrogen, fluoro, and trifluoromethyl, unless stated otherwise.
  • the compound of any one of embodiments Al to A39b, or a pharmaceutically acceptable salt thereof is wherein the Degron is an E3 ubiquitin ligase ligand of formula (ii):
  • the compound of any one of embodiments Al to A39b and A41 to A67, or a pharmaceutically acceptable salt thereof, is wherein Y a is CH.
  • the compound of any one of embodiments Al to A39b and A41 to A67, or a pharmaceutically acceptable salt thereof, is wherein Y a is N.
  • the compound of any one of embodiments Al to A39b and A41 to A69, or a pharmaceutically acceptable salt thereof is wherein Z a is a bond, -NH-, -O-, or -NHC(O)-.
  • A71 the compound of any one of embodiments Al to A39b and A41 to A70, or a pharmaceutically acceptable salt thereof, is wherein Z a is a bond, -NH-, or -NHC(O)-.
  • the compound of any one of embodiments Al to A39b and A41 to A71, or a pharmaceutically acceptable salt thereof, is wherein Z a is a bond.
  • the compound of any one of embodiments Al to A39b and A41 to A71, or a pharmaceutically acceptable salt thereof, is wherein Z a is -NH-, or -NHC(O)-.
  • the compound of any one of embodiments Al to A39b, A41 to A71, and A73, or a pharmaceutically acceptable salt thereof, is wherein Z a is -NH-.
  • the compound of any one of embodiments Al to A39b, A41 to A71, and A73, or a pharmaceutically acceptable salt thereof, is wherein Z a is -NHC(O)-.
  • the compound of any one of embodiments Al to A39b and A41 to A74a, or a pharmaceutically acceptable salt thereof is wherein ring B is 5- or 6-membered monocyclic heteroarylene or a 9- or 10-membered fused bicyclic heteroarylene, wherein each heteroarylene ring contains one to three nitrogen ring atoms and each ring is substituted with R ee and R ff .
  • the compound of any one of embodiments Al to A39b, A41 to A74a, and A77, or a pharmaceutically acceptable salt thereof is wherein ring B is 5- or 6- membered monocyclic heteroarylene containing one or two nitrogen ring atoms substituted with R ee and R ff .
  • the compound of any one of embodiments Al to A39b, A41 to A74a, and A77, or a pharmaceutically acceptable salt thereof is wherein ring B is a 9- or 10-membered fused bicyclic heteroarylene containing one to three nitrogen ring atoms and substituted with R ee and R ff .
  • the compound of any one of embodiments Al to A39b, A41 to A74a, A77, and A79, or a pharmaceutically acceptable salt thereof is wherein ring B is a 9- or 10-membered fused bicyclic heteroarylene containing one or two nitrogen ring atoms and substituted with R ee and R ff .
  • the compound of any one of embodiments Al to A39b and A41 to A80, or a pharmaceutically acceptable salt thereof, is wherein the E3 ubiquitin ligase ligand of formula (ii) is:
  • the compound of any one of embodiments Al to A39b and A41 to A81, or a pharmaceutically acceptable salt thereof is wherein the E3 ubiquitin ligase ligand of formula (ii) is: where ring B is cyclylaminylene.
  • the compound of any one of embodiments Al to A39b and A41 to A82, or a pharmaceutically acceptable salt thereof is wherein the E3 ubiquitin ligase ligand of formula A83.
  • the compound of any one of embodiments Al to A39b and A41 to A82, or a pharmaceutically acceptable salt thereof is wherein the E3 ubiquitin ligase ligand of formula (ii) is:
  • the compound of any one of embodiments Al to A39b and A41 to A83, or a pharmaceutically acceptable salt thereof, is wherein the E3 ubiquitin ligase ligand of formula
  • the compound of any one of embodiments Al to A39b and A41 to A83 A, or a pharmaceutically acceptable salt thereof is wherein each R ee and R ff are independently selected from hydrogen, alkyl, alkoxy, halo, cyano, haloalkyl, and haloalkoxy unless stated otherwise.
  • each R ee and R ff are independently selected from hydrogen, alkyl, alkoxy, halo, cyano, haloalkyl, and haloalkoxy unless stated otherwise.
  • the compound of any one of embodiments Al to A39b and A41 to A85, or a pharmaceutically acceptable salt thereof is wherein R ee and R ff are independently selected from hydrogen, methyl, ethyl, isopropyl, cyclopropyl, methoxy, ethoxy, fluoro, chloro, trifluoromethyl, 2,2,2-trifluoroethyl, difluoromethyl, difluoromethoxy, trifluoromethoxy, and cyano unless stated otherwise.
  • the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof is wherein R ee and R ff are independently selected from hydrogen and methoxy unless stated otherwise.
  • the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof is wherein R ee and R ff are independently selected from hydrogen, methyl, ethyl, isopropyl, chloro, and fluoro unless stated otherwise.
  • the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof is wherein one of R ee and R ff is hydrogen or fluoro and the other of R ee and R ff is selected from hydrogen, trifluoromethyl, 2,2,2-trifluoroethyl, and difluoromethyl unless stated otherwise.
  • the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof is wherein R ee and R ff are independently selected from hydrogen, difluoromethoxy, and trifluoromethoxy unless stated otherwise.
  • the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof is wherein R ee and R ff are independently selected from hydrogen, chloro, fluoro, and trifluoromethyl unless stated otherwise.
  • the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein R ee and R ff are hydrogen.
  • the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein R ee and R ff are chloro unless stated otherwise.
  • the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof is wherein R ee and R ff are fluoro unless stated otherwise.
  • A96 the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein R ee and R ff are independently trifluoromethyl or 2,2,2-trifluoroethyl unless stated otherwise.
  • the compound of any one of embodiments Al to A96, or a pharmaceutically acceptable salt thereof is wherein Ar is phenylene, monocyclic heteroarylene, bridged heterocyclylene, or heterocyclylene, where each ring is substituted with R 1 , R k , and R m where R m is hydrogen.
  • the compound of any one of embodiments Al to A97, or a pharmaceutically acceptable salt thereof is wherein Ar is phenylene of formula or phenylene where alk and SO2 are attached at meta position or para position of the phenylene ring) substituted with R>, R k , and R m where R 1 and R k are independently selected from hydrogen, alkyl, alkoxy, halo, cyano, haloalkyl, and haloalkoxy and R m is hydrogen.
  • the compound of any one of embodiments Al to A98, or a pharmaceutically acceptable salt thereof is wherein the phenylene of Ar is or substituted with R 1 , R k , and R m where R 1 and R k are independently selected from hydrogen, deuterium, methyl, methoxy, fluoro, chloro, cyano, difluoromethyl, trifluoromethyl, difluoromethoxy, and trifluoromethoxy and R m is hydrogen.
  • Al 00 the compound of any one of embodiments Al to A99, or a pharmaceutically acceptable salt thereof, is wherein the phenylene of Ar is or substituted with R 1 , R k , and R m where R 1 and R k independently selected from hydrogen, fluoro, cyano, or trifluoromethyl and R m is hydrogen.
  • R 1 and R k independently selected from hydrogen, fluoro, cyano, or trifluoromethyl and R m is hydrogen.
  • A101-1 the compound of any one of embodiments Al to
  • Al 00, or a pharmaceutically acceptable salt thereof, is wherein the phenylene of Ar is
  • Al 00, or a pharmaceutically acceptable salt thereof, is wherein the phenylene of Ar is
  • the compound of any one of embodiments Al to A97, or a pharmaceutically acceptable salt thereof is wherein Ar is monocyclic heteroarylene (such as imidazol-l,5-diyl, pyridin-2,4-diyl, pyridin-2,6-diyl, pyridin-2,5-diyl, or pyri din-3, 5 -diyl) substituted with R 1 , R k , and R m where R 1 and R k are independently selected from hydrogen, alkyl, alkoxy, halo, haloalkyl, cyano, and haloalkoxy and R m is hydrogen.
  • Ar is monocyclic heteroarylene (such as imidazol-l,5-diyl, pyridin-2,4-diyl, pyridin-2,6-diyl, pyridin-2,5-diyl, or pyri din-3, 5 -diyl) substituted with R
  • the compound of any one of embodiments Al to A97, A99 to A101, A103, A104, A106, and A107 or a pharmaceutically acceptable salt thereof, is wherein the bridged heterocyclylene of Ar is selected from:
  • Al 17 the compound of any one of embodiments Al to A108 and
  • A120, and A122, or a pharmaceutically acceptable salt thereof is wherein -Z-alk-Ar-SCh- is: wherein R d , R e , and R k are as defined therein.
  • the compound of any one of embodiments Al to A98, Al 14, A120, and A122, or a pharmaceutically acceptable salt thereof is wherein -Z-alk-Ar-SCh- is: wherein R d , R e , and R k are as defined therein.
  • A133 the compound of any one of embodiments Al to A98, Al 14, A120, A121, and A123 to A127, or a pharmaceutically acceptable salt thereof, is wherein
  • the compound of any one of embodiments Al to A98, Al 14, A120, A121, A123 to A127, and A133, or a pharmaceutically acceptable salt thereof is wherein A135.
  • the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof is wherein alk is C3 to Ce alkenylene substituted with R f where R f is hydrogen.
  • the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof is wherein alk is C3 to Ce alkenylene substituted with R f where R f is fluoro or cyano.
  • the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof is wherein alk is C3 to Ce alkylene substituted with R g , R h , and R 1 where R g , R h , and R 1 are hydrogen.
  • the compound of embodiment A138, or a pharmaceutically acceptable salt thereof is wherein the halo of the at least one of R g , R h , and R 1 is fluoro.
  • the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof is wherein alk is C3 to Ce alkylene substituted with R g , R h , and R 1 where R h is other than hydrogen and R 1 is hydrogen or when R g and R h are attached to the same carbon or to adjacent carbon atoms of the linear portion of the C3 to Ce alkylene, R g and R h together with the carbon atom(s) to which they are attached can form cycloalkylene or heterocyclylene where the cycloalkylene and heterocyclylene formed by R g and R h are substituted with R 9 and R 10 .
  • the compound of any one of embodiments A140, or a pharmaceutically acceptable salt thereof is wherein alk is C3 to Ce alkylene substituted with R g , R h , and R 1 where R h is other than hydrogen and R 1 is hydrogen.
  • the compound of any one of embodiments Al to 141, or a pharmaceutically acceptable salt thereof is wherein the C3 to Ce alkenylene and C3 to Ce alkylene of alk are linear C3 to Ce alkenylene and linear C3 to Ce alkylene, respectively, and substituted as defined therein.
  • R h is other than hydrogen and R 1 is hydrogen.
  • the compound of any one of embodiments Al to A134 and A140 to A143, or a pharmaceutically acceptable salt thereof is wherein the linear C3 to Ce alkylene of alk is -CH2CH(R h )CH2- where R h is other than hydrogen and R 1 is hydrogen.
  • the compound of any one of embodiments Al to A134 and A140 to A144, or a pharmaceutically acceptable salt thereof is wherein R g of linear C3 to Ce alkylene of alk is hydrogen, deuterium, or halo and R h of linear C3 to Ce alkylene of alk is halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, cyanoalkyloxy, phenyl, heteroaryl, heterocyclyl, or bridged heterocyclyl, each ring substituted as defined therein unless stated otherwise.
  • the compound of any one of embodiments Al to A134 and A140 to A145, or a pharmaceutically acceptable salt thereof is wherein R g of linear C3 to Ce alkylene of alk is hydrogen and R h of linear C3 to Ce alkylene of alk is halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, dialkylaminocarbonyl, alkylcarbonylamino, cyano, phenyl, heteroaryl, heterocyclyl, or bridged heterocyclyl, each ring substituted as defined therein.
  • the compound of any one of embodiments Al to A134 and A140 to A146, or a pharmaceutically acceptable salt thereof is wherein R g of linear C3 to Ce alkylene of alk is hydrogen and R h of linear C3 to Ce alkylene of alk is halo, haloalkoxy, alkoxy, hydroxy, dialkylaminocarbonyl, cyano, heterocyclyl, or heteroaryl, each ring substituted as defined therein.
  • the compound of any one of embodiments Al to A134 and A140 to A147, or a pharmaceutically acceptable salt thereof is wherein the heteroaryl, heterocyclyl, and bridged heterocyclyl of R h of linear C3 to Ce alkylene of alk, when present, are five or six membered ring and each ring is substituted as defined therein.
  • the compound of any one of embodiments Al to A134 and A140 to A148, or a pharmaceutically acceptable salt thereof is wherein R g of linear C3 to Ce alkylene of alk is hydrogen, deuterium, or fluoro unless stated otherwise and R h of linear C3 to Ce alkylene of alk is fluoro, cyclopropyl, cyclobutyl, cyclopropyloxy, cyclobutyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, aminocarbonyl, methylaminocarbonyl, dimethylaminocarbonyl, diethylaminocarbonyl, methylcarbonylamino, ethylcarbonylamino, phenyl, pyrazolyl, furanyl, thiazolyl, pyridinyl, pyrrolidinyl, 2-oxopyrrolidinyl, piperidinyl,
  • the compound of any one of embodiments Al to A134 and A140 to A149, or a pharmaceutically acceptable salt thereof is wherein R g of linear C3 to Ce alkylene of alk is hydrogen, deuterium, or fluoro, unless stated otherwise and R h of linear C3 to Ce alkylene of alk is fluoro, cyclopropyl, cyclopropyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, methylaminocarbonyl, dimethylaminocarbonyl, methylcarbonylamino, phenyl, pyrazol-l-yl, pyrrazol-4-yl, pyridin-4-yl, pyrrolidin-l-yl, 2-oxopyrrolidin-l-yl, where each ring of R h is substituted with R 7 and R 8 independently selected from hydrogen, deuterium, methyl, or fluor
  • the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof is wherein alk is branched C4 to Ce alkylene substituted with R g , R h , and R 1 .
  • the compound of any one of embodiments Al to A138 and Al 50, or a pharmaceutically acceptable salt thereof is wherein the C3 to Ce alkenylene and C3 to Ce alkylene of alk are branched C4 to Ce alkenylene and C4 to Ce alkylene, respectively, where the C4 to Ce alkylene is substituted with R g , R h , and R 1 as defined therein.
  • the compound of any one of embodiments Al to A138 and Al 50 to Al 53, or a pharmaceutically acceptable salt thereof is wherein the R g and R 1 of branched C4 to Ce alkylene of alk are independently hydrogen or halo (unless stated otherwise) and R h of branched C4 to Ce alkylene of alk is hydrogen, halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, cyanoalkyloxy, phenyl, heteroaryl, heterocyclyl, heterocyclyloxy, heterocyclylcarbonyl, or bridged heterocyclyl (unless stated otherwise), where each ring of R h is substituted as defined therein.
  • the compound of any one of embodiments Al to A138 and Al 50 to Al 54, or a pharmaceutically acceptable salt thereof is wherein the R g and R 1 of branched C4 to Ce alkylene of alk are hydrogen or fluoro (unless stated otherwise) and R h of branched C4 to Ce alkylene of alk is hydrogen, halo, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, phenyl, heteroaryl, heterocyclyl, heterocyclyloxy, heterocyclylcarbonyl, or bridged heterocyclyl (unless stated otherwise), where each ring of R h is substituted as defined therein.
  • the compound of any one of embodiments Al to A138 and Al 50 to Al 55, or a pharmaceutically acceptable salt thereof is wherein alk is branched C4 to Ce alkylene substituted as defined therein and the heteroaryl, heterocyclyl, by itself or as part of heterocyclyloxy, heterocyclylcarbonyl, and bridged heterocyclyl of R h of branched C4 to Ce alkylene of alk, when present, are five or six membered ring and each ring of R h is substituted as defined therein.
  • R g and R 1 of branched C4 to Ce alkylene of alk are independently hydrogen, deuterium, or fluoro (unless stated otherwise) and R h of branched C4 to Ce alkylene of alk, unless stated otherwise, is hydrogen, deuterium, fluoro, cyclopropyl, cyclobutyl, cyclopropyloxy, cyclobutyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, aminocarbonyl, methylaminocarbonyl, dimethylaminocarbonyl, diethylaminocarbonyl, methylcarbonylamino, ethylcarbonylamino, phenyl, pyrazolyl, thiazolyl, furanyl, pyridinyl, pyrrolidin
  • the compound of any one of embodiments Al to A134 and Al 66, or a pharmaceutically acceptable salt thereof is wherein the alk is C3 to Ce heteroalkylene substituted with R g , R h , and R 1 where R g , R h , and R 1 are hydrogen or halo, provided at least one of R g , R h , and R 1 is halo.
  • the compound of any one of embodiments Al to A134 and A166, or a pharmaceutically acceptable salt thereof is wherein alk is C3 to Ce heteroalkylene substituted with R g , R h , and R 1 where R h is other than hydrogen and R 1 is hydrogen, or when R g and R h are attached to the same carbon or to adjacent carbon atoms of the linear portion of the C3 to Ce heteroalkylene, R g and R h together with the carbon atom to which they are attached can form cycloalkylene or heterocyclylene where the cycloalkylene and heterocyclylene are substituted with R 9 and R 10 .
  • A169a the compound of any one of embodiments Al to A134 and Al 69, or a pharmaceutically acceptable salt thereof, is wherein R g and R h are attached to the same carbon atom of the linear portion of the C3 to Ce heteroalkylene and together with the carbon atom to which they are attached can form cycloalkylene of formula: or heterocyclylene of formula: where each ring is substituted with R 9 and R 10 , preferably R 9 is hydrogen, halo, methyl or ethyl and R 10 is hydrogen.
  • A169b the compound of any one of embodiments Al to A134 and Al 69, or a pharmaceutically acceptable salt thereof, is wherein R g and R h are attached to adjacent carbon atoms of the linear portion of the C3 to Ce heteroalkylene and together with the carbon atoms to which they are attached can form cycloalkylene of formula: or heterocyclylene of formula: where each ring is substituted with R 9 and R 10 , preferably R 9 is hydrogen, halo, methyl or ethyl and R 10 is hydrogen.
  • the compound of any one of embodiments Al to A134, Al 66, and Al 69, or a pharmaceutically acceptable salt thereof is wherein alk is C3 to Ce heteroalkylene substituted with R g , R h , and R 1 where R h is other than hydrogen and R 1 is hydrogen.
  • the compound of any one of embodiments Al to 134, A142 to A149A, A151 to A156, A158, A158A, and A166 to A170, or a pharmaceutically acceptable salt thereof is wherein the C3 to Ce heteroalkylene of alk is linear C3 to Ce heteroalkylene and for sake of clarity, since this embodiment is only characterizing that the C3 to Ce heteroalkylene of alk is linear in nature, it is understood the linear C3 to Ce heteroalkylene is substituted with R g , R h , and R 1 as provided in the referred to embodiments.
  • the compound of any one of embodiments Al to A134, A142 to A149A, A152 to A156, A158, A158A, A166 to A169, A170, and A171, or a pharmaceutically acceptable salt thereof is wherein the linear C3 to Ce heteroalkylene of alk is -CH2CH 2 X a CH2-, -CH2X a CH 2 CH2-, -CH 2 CH 2 CH 2 X a -, -X a CH2CH 2 CH2-, -X y CH 2 CH 2 X a -, -X y CH 2 CH 2 X a CH 2 -, -CH2CH2CH 2 X a CH2-, -CH 2 X a CH2-, -CH 2 CH 2 X a -, -CH 2 CONR q CH 2 -, -CH 2 SO 2 NR q CH 2 -, -CH 2 NR q COCH2-
  • the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, and A166 to A172, or a pharmaceutically acceptable salt thereof, is wherein R q is hydrogen, methyl, ethyl, methylcarbonyl, or methyl sulfonyl.
  • R q is hydrogen, methyl, ethyl, methylcarbonyl, or methyl sulfonyl.
  • the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A173, or a pharmaceutically acceptable salt thereof is wherein the linear C3 to Ce heteroalkylene of alk is -CH 2 X a CH2-, -X a CH 2 CH2-, -CH 2 CH 2 X a -, -CH 2 CH(R h )X a -, -X a CH(R h )CH 2 -, -CH 2 CONR q -, -CH2SO2NR -CH 2 NR q CO-, -CH 2 NR q SO 2 -, -CONR q CH 2 -, -SO 2 NR q CH 2 -, -NR q COCH 2 -, or -NR q SO 2 CH 2 - where X a is -S-, -SO2-, -O-
  • the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A174, or a pharmaceutically acceptable salt thereof is wherein the linear C3 to Ce heteroalkylene of alk is -CH 2 CH 2 CH 2 X a - or -CH 2 CH 2 X a
  • the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A175, or a pharmaceutically acceptable salt thereof is wherein R g of linear C3 to Ce heteroalkylene of alk is hydrogen or halo (unless stated otherwise) and R h of linear C3 to Ce heteroalkylene of alk is (unless stated otherwise) hydrogen, halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, cyanoalkyloxy, phenyl, heteroaryl, heterocyclyl, or bridged heterocyclyl, each ring substituted as defined therein and R 1 is hydrogen.
  • Al 77 the compound of any one of embodiments Al to Al 34, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A176, or a pharmaceutically acceptable salt thereof, is wherein R g of linear C3 to Ce heteroalkylene of alk is hydrogen or fluoro (unless stated otherwise) and R h of linear C3 to Ce heteroalkylene of alk (unless stated otherwise) is hydrogen halo, haloalkoxy, alkoxy, hydroxy, dialkylaminocarbonyl, cyano, or heteroaryl substituted as defined therein.
  • the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A177, or a pharmaceutically acceptable salt thereof is wherein the heteroaryl, heterocyclyl, and bridged heterocyclyl of R h of linear C3 to Ce heteroalkylene of alk, when present, are five or six membered ring and each ring is substituted as defined therein.
  • the compound of any one of embodiments Al to Al 34, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A178, or a pharmaceutically acceptable salt thereof is wherein R g of linear C3 to Ce heteroalkylene of alk, unless stated otherwise, is hydrogen, deuterium, or fluoro, and R h of linear C3 to Ce heteroalkylene of alk, unless stated otherwise, is hydrogen, deuterium, fluoro, cyclopropyl, cyclobutyl, cyclopropyloxy, cyclobutyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, aminocarbonyl, methylaminocarbonyl, dimethylaminocarbonyl, diethylaminocarbonyl, methylcarbonylamino, ethylcarbonylamino, phenyl,
  • the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170to A179, or a pharmaceutically acceptable salt thereof is wherein R g of linear C3 to Ce heteroalkylene of alk is hydrogen and R h of linear C3 to Ce heteroalkylene of alk is fluoro, cyclopropyl, cyclopropyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, methylaminocarbonyl, dimethylaminocarbonyl, methylcarbonylamino, phenyl, pyrazol-l-yl, pyrrazol-4-yl, pyridin-4-yl, pyrrolidin-l-yl, 2-oxopyrrolidin-l-yl, each ring substituted with R 7 and R 8 independently selected from hydrogen, deuter
  • the compound of any one of embodiments A172 to A180, or a pharmaceutically acceptable salt thereof is wherein X a is -NR q -, -O-, -S-, or -SO2-, preferably -NR q -, -O-, or -S-.
  • the compound of any one of embodiments A172 to A184, or a pharmaceutically acceptable salt thereof, is wherein X 7 is -NH- or -NCH3-.
  • uterine cancer e.g. endometrial cancer and uterine sarcoma
  • stomach cancer i.e. gastric cancer
  • lung cancer e.g., adenocarcinoma, small cell lung cancer and non-small cell lung carcinomas, parvicellular and non-parvicellular carcinoma, bronchial carcinoma, bronchial adenoma, pleuropulmonary blastoma
  • renal cancer e.g.
  • the cancer is breast cancer, including, e.g., ER-positive/HR- positive, HER2 -negative breast cancer; ER-positive/HR-positive, HER2-positive breast cancer; ER-negative/HR-negative, HER2-positive breast cancer, triple negative breast cancer (TNBC); or inflammatory breast cancer.
  • the breast cancer is endocrine resistant breast cancer, anti-HER2 therapy (e.g. trastuzumab) resistant breast cancer, or breast cancer demonstrating primary or acquired resistance to CDK4/CDK6 inhibition.
  • the breast cancer is advanced or metastatic breast cancer.
  • the breast cancer is characterized by amplification or overexpression of CCNDl and/or CDK4.
  • compounds of Formula (I) as described in the Summary as described in the first aspect (or any of the embodiments thereof herein above) are useful in treating autoimmune diseases autoimmune diseases e.g., rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), primary Sjogren’s syndrome (pSS), multiple sclerosis (MS), Crohn’s disease (CD), gout, uveitis, pemphigus vulgaris, and sepsis, and can also be used as a promising preventive treatment for noise-, cisplatin-, or antibiotic-induced or age-related hearing loss.
  • autoimmune diseases e.g., rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), primary Sjogren’s syndrome (pSS), multiple sclerosis (MS), Crohn’s disease (CD), gout, uveitis, pemphigus vulgaris, and sepsis, and can also be used as
  • Step 5 tert-Butyl (l-((3-(2-((4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol- 6-yl)piperidin-l-yl)methyl)butyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
  • Step 6 1 -(6-(l -(2-(3 -((4- Aminopiperidin- 1 -yl)sulfonyl)benzyl)butyl)piperidin-4-yl)- 1 -methyl- 1H- indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
  • HCI/H2O (60.0 mL/225.0 mL) was warmed to 90 °C until fully dissolved. The mixture was cooled to 0 ⁇ 5 °C. A solution of NaNCL (1.9 g, 27.54 mmol, 1.08 eq.) in H2O (5 mL) was added dropwise to above mixture then followed by addition of CuCl (0.2 g, 2.02 mmol, 0.08 eq.) in SOCI2/H2O (8.0 mL/50.0 mL) dropwise at 0 ⁇ 5 °C. The resulting mixture was stirred at 0 ⁇ 5 °C for 1 h. The mixture was diluted with water and extracted with EtOAc.
  • Step 2 tert-Butyl (l-((3-bromo-4-cyanophenyl)sulfonyl)piperidin-4-yl)carbamate
  • Step 3 tert-Butyl (l-((4-cyano-3-(2-methyl-3-oxopropyl)phenyl)sulfonyl)piperidin-4-yl)- carbamate
  • Step 4 4-((4-Aminopiperidin-l-yl)sulfonyl)-2-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)- l-methyl-lH-indazol-6-yl)piperidin-l-yl)-2-methylpropyl)benzonitrile hydrochloride
  • Step 2 tert-Butyl (l-((3-hydroxyphenyl)sulfonyl)piperidin-4-yl)carbamate
  • Step 1 tert-Butyl (l-((3-(2-methylallyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
  • Step 2 tert-Butyl (l-((3-((2-methyloxiran-2-yl)methyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
  • Step 3 tert-Butyl (l-((3-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol- 6-yl)piperidin-l-yl)-2-hydroxy-2-methylpropyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
  • Step 4 1 -(6-(l -(3 -(3 -((4- Aminopiperidin- 1 -yl)sulfonyl)phenyl)-2-hydroxy-2-methylpropyl)- piperidin-4-yl)-l-methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
  • Step 2 tert-Butyl (l-((4-(2-methyl-3-oxopropyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
  • Step 4 1 -(6-(l -(3 -(4-((4- Aminopiperidin- 1 -yl)sulfonyl)phenyl)-2-methylpropyl)piperidin-4-yl)- 1 - methyl- lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-di one hydrochloride
  • Step 1 6-(Ethoxymethyl)-2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one
  • Step 1 6-(Hydroxymethyl)-8-methyl-2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one
  • Step 3 6-((Difluoromethoxy)methyl)-8-methyl-2-(methylsulfonyl)pyrido[2,3-d]pyrimidin-7(8H)- one
  • Step 1 l-(6-(l-(3-(3-((4-((6-(Ethoxymethyl)-8-methyl-7-oxo-7,8-dihydropyrido[2,3-d]pyrimidin-
  • adherent cells such as 0VCAR3 (CDK2-dependent cell line) and T47D (CDK4-dependent) were seeded into 96-well tissue-culture treated plates at 20,000 cells/well in 200 pL media and incubated overnight at 37 °C in CO2 atmosphere.
  • the cells were treated with test compounds at concentrations from 0.3 to 3,000 nM using Tecan D300e digital dispenser (HP Inc., CA, USA).
  • Tecan D300e digital dispenser HP Inc., CA, USA.
  • THP1 Tecan D300e digital dispenser
  • cells were seeded into sterile 384- well plates at 12,000 cells/well in 30 pL media and treated with compounds immediately after plating. Twenty-four hours after compound treatment, cell culture media of the adherent cells is removed by flicking the plate and tapping the plate against clean paper towel.
  • 30 pL IX lysis buffer was supplemented from the kit was added to each well of adherent cells.
  • 10 pL 4X lysis buffer was added to 30 pL cells in 384-well plates. The plates were then incubated at room temperature on shaker for 30 min. After homogenization by pipetting up and down, 8 pL cell lysate from cell culture plate was transferred to 384-well small volume white detection plate. 2 pL premixed detection solution was added and the plate was covered with sealer. To prepare the detection solution, d2 conjugated-phospho-RB antibody and Eu-cryptate conjugated phosphor-RB antibody were diluted into detection buffer following manufacturer’s instruction.
  • AA indicates a IC50 of less than 1 nM
  • A indicates a IC50 of greater than or equal to 1 nM but less than or equal to 20 nM
  • B indicates a IC50 of greater than 20 nM but less than or equal to 100 nM
  • C indicates a IC50 of greater than 100 nM but less than or equal to 2.5 pM
  • D indicates a IC50 of greater than 2.5 pM but less than or equal to 5 pM
  • E indicates a IC50 of greater than 5 pM.
  • CDK1TPEG half maximal degradation concentration
  • Dmax maximum degradation level
  • adherent cells were seeded into 96-well tissue-culture treated plates at 20,000 cells/well in 200 pL media and incubated overnight at 37°C in CO2 atmosphere.
  • cells were treated with compounds at concentration ranging from 0.1 to 1,000 nM using Tecan D300e digital dispenser (HP Inc., CA, USA).
  • Tecan D300e digital dispenser HP Inc., CA, USA.
  • cell culture media was removed by flicking the plate and tapping the plate against clean paper towel.
  • 30 pL IX lysis buffer was supplemented from the kit and added to each well and the plate is incubated at room temperature on shaker for 30 min. After homogenization by pipetting up and down, 8 pL cell lysate from 96-well cell culture plate was transferred to 384-well small volume white detection plate.
  • Formulation Examples The following are representative pharmaceutical formulations containing a compound of the present disclosure.
  • a pharmaceutical ophthalmic solution composition 100 mg of a compound of Formula (I) is mixed with 0.9 g of NaCl in 100 mL of purified water and filtered using a 0.2 micron filter. The resulting isotonic solution is then incorporated into ophthalmic delivery units, such as eye drop containers, which are suitable for ophthalmic administration.
  • ophthalmic delivery units such as eye drop containers
  • a pharmaceutical nasal spray solution 10 g of a compound of Formula (I) is mixed with 30 mL of a 0.05M phosphate buffer solution (pH 4.4). The solution is placed in a nasal administrator designed to deliver 100 pL of spray for each application.
  • a 0.05M phosphate buffer solution pH 4.4

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Abstract

The present disclosure provides certain bifunctional compounds that cause degradation of Cyclin-dependent kinase 4 (CDK4)via ubiquitin proteasome pathway and are therefore useful for the treatment of diseases mediated by CDK4. Also provided are pharmaceutical compositions containing such compounds and processes for preparing such compounds.

Description

BIFUNCTIONAL COMPOUNDS CONTAINING PYRIDO[2,3-d]PYRIMIDIN-7(8H)-ONE DERIVATIVES FOR DEGRADING CYCLIN-DEPENDENT KINASE 4 VIA UBIQUITIN PROTEASOME PATHWAY
Cross-reference to Related Applications
This PCT International Patent Application claims the benefit of U.S. Provisional Application No. 63/613,020, filed on December 20, 2023; the entire contents of which are hereby incorporated by reference.
Field of the disclosure
The present disclosure provides certain bifunctional compounds containing pyrido[2,3-d]- pyrimidin-7(8h)-one derivatives that cause degradation of Cyclin-dependent kinase 4 (CDK4) via ubiquitin proteasome pathway and are therefore useful for the treatment of diseases mediated by CDK4. Also provided are pharmaceutical compositions containing such compounds and processes for preparing such compounds.
Background
Cyclin-dependent kinases (CDKs) are essential cellular serine/threonine kinases that play an important role in orchestrating signaling events, such as DNA replication and protein synthesis, to ensure faithful eukaryotic cell division and proliferation. The regulation of CDK activity is tightly controlled by the fluctuating levels of various cyclins, which form heterodimeric complexes with CDKs to activate them. Out of the 21 identified CDKs, CDKl/Cyclin B, CDK2/Cyclin E, CDK2/Cyclin A, CDK4/Cyclin D, CDK6/Cyclin D complexes are well known to be vital regulators of cell cycle progression. Other CDKs are involved in regulating gene transcription, DNA repair, differentiation, and apoptosis (see Morgan, D. O. Annu. Rev. Cell. Dev. Biol. (1997) 13: 261-291). In the canonical model of cell cycle, mitogenic signaling upregulates D-type cyclins, which directly bind and activate CDK4/6. Active CDK4/6-cyclin D complexes partially phosphorylate Rb, disrupting the Rb/E2F interaction and de-repressing E2F activity, leading to upregulation of cyclin E, a CDK2 activator. Cdk2-cyclin E further hyperphosphorylates Rb, releasing E2F to transcribe genes required for S-phase entry. During S-phase, cyclin E is degraded and CDK2 forms a complex with cyclin A to promote phosphorylation of substrates essential for DNA replication and inactivation of E2F, completing S-phase (Asghar et al. Nat. Rev. Drug. Discov. (2015) 14: 130-146). CDKl-Cyclin A and CDKl-Cyclin B complexes are activated in late S and G2 phases to drive the transition into and completion of mitosis, respectively (Katsuno et al., 2009; Lindqvist et al., 2009; Lohka et al., 1988).
Due to their crucial roles in regulating cell cycle and other essential cellular processes, increased activity or temporally abnormal activation of CDKs has been shown to promote tumorigenesis and disease progression (Cordon-Cardo C. Am. J. Pathol. (1995) 147:545-560; Karp JE, Broder S. Nat. Med. (1995) 1 :309-320; Hall M, Peters G. Adv. Cancer Res. (1996) 68:67-108). Genetic changes in CDK-cyclin complexes and the proteins that regulate them are widespread in various cancers and are often associated with poor clinical outcomes. Common alterations include amplifications/overexpression of cyclin D, cyclin E, CDK4, and CDK6; loss of Rb; deficiency in CDK inhibitory regulators such as pl 6, p21, p27, and loss-of-function mutations in FBXW7, a component of SCFFbw7ubiquitin E3 ligase responsible for cyclin E degradation. (Smalley et al. Cancer Res. (2008) 68: 5743-52).
Over the last two decades, there has been significant interest in developing CDK inhibitors for therapeutic purposes. In combination with endocrine therapies, selective reversible inhibitors of CDK4 and CDK6 e.g., palbociclib, riboci clib, and abemaciclib have revolutionized the therapeutic management for hormone receptor-positive (HR+) metastatic breast cancer (MBC). Ongoing clinical trials are also investigating these CDK4/6 inhibitors as single agents or in combination with other therapeutics for various cancers. (O'Leary et al. Nature Reviews (2016) 13:417-430).
Despite their significant clinical efficacy in ER-positive metastatic breast cancer, CDK4/6 inhibitors have limitations. CDK4/6 inhibitors palbociclib and ribociclib exhibit relatively high hematological toxicity, primarily neutropenia. CDK6 is highly expressed in the blood system and plays a role in regulating the growth of hematopoietic cells. Therefore, it is generally believed that the inhibition of CDK6 leads to neutropenia as breast cancer cells mainly depend on CDK4 for proliferation. Abemaciclib exhibits weaker inhibition of CDK6 than CDK4, resulting in lower hematological toxicity.
Considering these factors, developing a small molecule inhibitor or a proteolysis-targeting chimeric molecule (PROTAC) that selectively targets CDK4 could represent a therapeutic opportunity with reduced toxicity and improved overall therapeutic efficacy.
PROTACs are bifunctional molecules comprised of target protein-recruitment moiety and a ligand for E3 ligase, connected by a biocompatible linker. PROTACs bring the protein of interest and the E3 ligase into close proximity and induce ubiquitination and subsequent degradation of the target protein by proteasome. Compared to small molecule drugs that typically bind disease-relevant proteins and inhibit their function, PROTACs display several unique and attractive features that make them desirable drug candidates. For example, PROTACs have been shown to be more selective than their inhibitor counterparts, potentially reducing off-target toxicity. Moreover, PROTACs can perform multiple rounds of target ubiquitination and degradation. Due to this catalytic mode of action, PROTACs can function at sub-stoichiometric receptor occupancies. The E3 ligases used in PROTACs mainly include cereblon (CRBN), Von Hippel-Lindau-containing complex (VHL), inhibitor of apoptosis protein (LAP), and mouse double minute 2 (MDM2).
Therefore, PROTACs that could selectively recruit CDK4 to a ubiquitin ligase, and thereby causing ubiquitylation and proteasomal degradation CDK4 are desirable. The present disclosure fulfills this and related needs.
Summary
In a first aspect, provided is a compound of Formula (I):
Figure imgf000004_0001
wherein:
R1 is hydrogen, linear alkyl, deuterated alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, cycloalkylalkyl, arylalkyl, heteroarylalkyl, or heterocyclylalkyl;
R2 is hydroxyalkyl, alkoxyalkyl, or haloalkoxyalkyl, provided that when R2 is hydroxyalkyl, then R1 is haloalkyl;
R2a is hydrogen or deuterium;
Hy is cycloalkylene, arylene, heteroarylene, heterocyclylene, bicyclic heterocyclylene, spiro heterocyclylene, bridged heterocyclylene, or fused heterocyclylene, where each of the aforementioned rings is substituted with Ra, Rb, and Rc independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano; Degron is an E3 ubiquitin ligase ligand selected from: (a) a group of formula (i):
Figure imgf000005_0001
(b) a group of formula (ii):
Figure imgf000005_0002
Ya is CH or N;
Za is a bond, -CH2-, -NH-, -O-, or -NHC(O)- where NH of -NHC(O)- is attached to Ya; ring A is a group of formula (a) or (b):
Figure imgf000005_0003
where:
Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano;
R4 and R5 are independently hydrogen or alkyl; or R4 and R5 together with the carbon to which they are attached form >C=O;
M is -O- or -NR6-; and
R6 is hydrogen or alkyl; ring B is phenylene, cyclylaminylene, a 5- or 6-membered monocyclic heteroarylene, or a 9- or 10-membered fused bicyclic heteroarylene, wherein one to three ring atoms of each heteroarylene ring are heteroatoms independently selected from nitrogen, oxygen, or sulfur and further wherein the phenylene, cyclylaminylene, and each heteroarylene are independently substituted with Ree and Rff independently selected from hydrogen, alkyl, cycloalkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano; and Z is -0-, -NR3- (where R3 is hydrogen or alkyl), cycloalkylene, phenylene, monocyclic heteroarylene, unsaturated heterocyclylene, heterocyclylene, bridged heterocyclylene, or spiro heterocyclylene and where each ring is substituted with Rd and Re independently selected from hydrogen, deuterium, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano; alk is C3 to Ce alkenylene substituted with Rf selected from hydrogen, fluoro, and cyano; C3 to Ce alkylene or C3 to Ce heteroalkylene wherein the C3 to Ce alkylene and C3 to Ce heteroalkylene are substituted with Rg, Rh, and R1 where Rg is hydrogen, deuterium or halo, Rh is hydrogen, deuterium, cycloalkyl, cycloalkyloxy, bridged cycloalkyl, halo, haloalkoxy, alkoxy, hydroxy, cyano, cyanoalkyl, cyanoalkyloxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, phenyl, heteroaryl, heterocyclyl, heterocyclyloxy, heterocyclylcarbonyl, or bridged heterocyclyl (where cycloalkyl, either by itself or as part of cycloalkyloxy, bridged cycloalkyl, phenyl, heteroaryl, heterocyclyl, either by itself or as part of heterocyclyloxy or heterocyclylcarbonyl, and bridged heterocyclyl are substituted with R7 and R8 independently selected from hydrogen, deuterium, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, hydroxy, alkyl carbonyl, alkyloxycarbonyl, amino, alkylamino, dialkylamino, and cyano); or when Rg and Rh are attached to the same carbon or to adjacent carbon atoms of the linear portion of the C3 to Ce alkylene or C3 to Ce heteroalkylene, Rg and Rh together with the carbon atom(s) to which they are attached can form cycloalkylene or heterocyclylene (where the cycloalkylene and heterocyclylene formed by Rg and Rh are substituted with R9 and R10 independently selected from hydrogen, deuterium, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, hydroxy, alkylcarbonyl, alkyloxycarbonyl, amino, alkylamino, dialkylamino, and cyano), and R1 is hydrogen or halo; and the linear portion of C3 to Ce alkenylene, C3 to Ce alkylene, and C3 to Ce heteroalkylene, attaching Ar and Z, contains at least three atoms;
Ar is phenylene, monocyclic heteroarylene, heterocyclylene, bridged heterocyclylene, or spiro heterocyclylene, where each of the aforementioned ring is substituted with R>, Rk, and Rm independently selected from hydrogen, deuterium, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano; or a pharmaceutically acceptable salt thereof.
In a second aspect, provided is a pharmaceutical composition comprising a compound of Formula (I) (or any of the embodiments thereof described herein), or a pharmaceutically acceptable salt thereof; and a pharmaceutically acceptable excipient.
In a third aspect, provided is a method of treating a disease mediated by CDK4 in a patient, preferably the patient is in need of such treatment, which method comprises administering to the patient, preferably a patient in need of such treatment, a therapeutically effective amount of a compound of Formula (I) (or any of the embodiments thereof described herein below), or a pharmaceutically acceptable salt thereof; or a pharmaceutical composition thereof disclosed herein. In a first embodiment of the third aspect, the disease is cancer. In a second subembodiment of the third aspect the disease is cancer selected from lung cancer (e.g., adenocarcinoma, small cell lung cancer, non-small cell lung carcinomas, parvicellular and non-parvicellular carcinoma, bronchial carcinoma, bronchial adenoma, and/or pleuropulmonary blastoma), skin cancer (e.g., melanoma, squamous cell carcinoma, Kaposi sarcoma, and/or Merkel cell skin cancer), bladder cancer, breast cancer, cervical cancer, colorectal cancer, cancer of the small intestine, colon cancer, rectal cancer, cancer of the anus, endometrial cancer, gastric cancer, head and neck cancer (e.g., cancers of the larynx, hypopharynx, nasopharynx, oropharynx, lips, and/or mouth), liver cancer (e.g., hepatocellular carcinoma and/or cholangiocellular carcinoma), ovarian cancer, prostate cancer, testicular cancer, uterine cancer, esophageal cancer, gall bladder cancer, pancreatic cancer (e.g., exocrine pancreatic carcinoma), stomach cancer, thyroid cancer, parathyroid cancer, bone cancer, biliary tract cancer, vaginal cancer, astrocytoma, liposarcomas, glioblastoma, neuroblastoma and/or kidney cancer. In a third embodiment of the third aspect, the cancers are those that are resistant to CDK4/6 inhibitors through CDK4-mediated mechanisms e.g., breast cancer. In a fourth embodiment of the third aspect, the disease is an autoimmune disease or a condition associated with an autoimmune disease, which method comprises administering to the patient, preferably a patient in need of such treatment, a therapeutically effective amount of a compound of Formula (I) (or any of the embodiments thereof described herein below), or a pharmaceutically acceptable salt thereof. In some embodiments, the autoimmune disease or condition associated with an autoimmune disease is selected from rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), primary Sjogren’s syndrome (pSS), multiple sclerosis (MS), Crohn’s disease (CD), uveitis, pemphigus vulgaris, and sepsis. In a fifth embodiment of the third aspect, the disease is gout.
In a fourth aspect, provided is a compound of Formula (I) (or any of the embodiments thereof described herein), or a pharmaceutically acceptable salt thereof for use in therapy. In one embodiment of the fourth aspect, the compound of Formula (I) (or any embodiments thereof disclosed herein), or a pharmaceutically acceptable salt thereof, is for use in the treatment of one or more of diseases disclosed in the third aspect above.
In a fifth aspect, provided is the use of a compound of Formula (I) (or any of the embodiments thereof described herein), or a pharmaceutically acceptable salt thereof, in the manufacture of a medicament for treating a disease in a patient in which the activity of CDK4 contributes to the pathology and/or symptoms of the disease. In one embodiment of the sixth aspect, the disease is one or more of diseases disclosed in the third aspect above.
In a sixth aspect, provided is a method of degrading CDK4 in a cell via ubiquitin proteasome pathway which method comprises contacting the cell with a compound of Formula (I) (or embodiments thereof as disclosed herein). In one embodiment of the first and sixth aspects, the CDK4 is degraded in the cell in vitro. In another embodiment of the first and seventh aspects, the CDK4 is degraded in the cell in vivo. In yet another embodiment of the first and sixth aspects, the CDK4 is degraded in a cell of a patient.
It has been surprisingly discovered that PROTACS of Formula (I) containing the -Z-alk- Ar- linker degrade CDK4 selectively over CDK1, CDK2, and/or CDK6.
In the aforementioned aspects involving the treatment of cancer, further embodiments are provided comprising administering the compound of first aspect and of Formula (I), or a pharmaceutically acceptable salt thereof (or any embodiments thereof disclosed herein) or the pharmaceutical composition of the third aspect, in combination with at least one additional anticancer agent. When combination therapy is used, the agents can be administered simultaneously or sequentially.
Detailed Description
Definitions:
Unless otherwise stated, the following terms used in the specification and claims are defined for the purposes of this Application and have the following meaning:
“Alkyl” means a linear or branched saturated monovalent hydrocarbon radical of one to six carbon atoms, e.g., methyl, ethyl, propyl, 2-propyl, butyl, pentyl, and the like. Linear as in this Application means straight chain alkyl.
“Alkenyl” means a linear or branched monovalent hydrocarbon radical of two to six carbon atoms containing a double bond e.g., ethenyl, propenyl, 2-propenyl, butenyl, pentenyl, and the like.
“Alkylene” means a linear or branched saturated divalent hydrocarbon radical of one to six carbon atoms unless otherwise stated. When alkylene contains three to six carbon atoms it is also referred to herein as C3 to C6 alkylene. Examples include, but are not limited to, methylene, ethylene, propylene, 1 -methylpropylene, 2-methylpropylene, butylene, pentylene, and the like.
“Alkenylene” means a linear or branched divalent hydrocarbon radical of two to six carbon atoms containing a double bond, e.g., ethenylene, propenylene, and the like. “Alkoxy” means a -ORP radical where Rp is alkyl as defined above, e.g., methoxy, ethoxy, propoxy, or 2-propoxy, n-, iso-, or tert-butoxy, and the like.
“Alkoxyalkyl” means a linear or a branched monovalent hydrocarbon radical of one to six carbons substituted with an alkoxy group as defined above. Representative examples include, but are not limited to, methoxymethyl, methoxyethyl, ethoxymethyl, ethoxyethyl, methoxypropyl, and the like.
“Alkoxycarbonyl” or “alkyloxycarbonyl” means a -C(O)ORP radical where Rp is alkyl as defined above, e.g., methoxy carbonyl, ethoxy carbonyl, and the like.
“Alkylcarbonylamino” means a -NRP’C(O)RP radical where Rp is alkyl and Rp’ is H or alkyl, as defined above, e.g., methylcarbonylamino, ethylcarbonylamino, and the like.
“Alkylcarbonyl” means a -C(O)RP radical where Rp is as defined herein, e.g., methylcarbonyl, ethylcarbonyland the like.
“Amino” means -NH2.
“Aminocarbonyl” means -C(O)NH2.
“Alkylaminocarbonyl” means -C(O)NHRP radical where Rp is alkyl as defined above e.g., methylaminocarbonyl, ethylaminocarbonyl, propylaminocarbonyl, and the like.
“Alkylcarbonylamino” means -NHC(O)RP radical where Rp is alkyl as defined above e.g., methylcarbonylamino, ethylcarbonylamino, propylcarbonylamino, and the like.
“Alkyl sulfonyl” means -S(O)2RP radical where Rp is alkyl as defined above e.g., methylsulfonyl, ethylsulfonyl, and the like.
“Dialkylaminocarbonyl” means -C(O)NRplRp radical where Rp and Rpl are independently alkyl as defined above e.g., dimethylaminocarbonyl, diethylaminocarbonyl, dipropylaminocarbonyl, and the like.
“Alkylamino” means -NHRP radical where Rp is alkyl as defined above e.g., methylamino, ethylamino, propylamino, and the like.
“Aryl” means a monovalent monocyclic or bicyclic aromatic hydrocarbon radical of 6 to 10 ring atoms e.g., phenyl or naphthyl.
“Aralkyl” or “arylalkyl” means -(alkylene)-Rp radical where Rp is aryl as defined above e.g., benzyl, phenethyl, and the like.
“Arylene” means a divalent aryl (as defined above) radical e.g., phenylene or naphthylene.
“Bicyclic heterocyclylene” means a saturated divalent fused bicyclic group of 8 to 12 ring atoms in which one, two, or three ring atoms are heteroatoms independently selected from N, NH, O, and S(O)n, where n is an integer selected from 0 to 2, the remaining ring atoms being carbon, unless stated otherwise. Additionally, one or two ring carbon atoms of the bicyclic heterocyclylene ring can optionally be replaced by a -CO- group. More specifically the term bicyclic heterocyclylene includes, but is not limited to, isoindolin-diyl, decahydro-2, 6- naphthyridin-diyl, octahydrocyclopenta[c]pyrrol-diyl, octahydro-lH-pyrrolo[3,4-c]pyridin-diyl, hexahydrofuro[3,2-b]furan-3,6-diyl, and the like. When the heterocyclylene ring is unsaturated it can contain one or two ring double bonds provided that the ring is not aromatic.
“Bridged cycloalkyl” means a saturated monovalent bicyclic ring having 5 to 8 ring carbon ring atoms in which two non-adjacent ring atoms are linked by a (CRpRp’)n group where n is an integer selected from 1 to 3 and Rp and Rp’ are independently H or methyl (also may be referred to herein as “bridging” group). Examples include, but are not limited to, bicyclo[l. l.l]pent-l-yl, bicyclo[2.2.1]heptyl, preferably, bicyclo[2.2.1]hept-2-yl, and the like.
“Bridged heterocyclyl” means a saturated monovalent bicyclic ring having 5 to 9 ring carbon ring atoms in which two non-adjacent ring atoms are linked by a (CRpRp’)n group where n is an integer selected from 1 to 3 and Rp and Rp’ are independently H or methyl (also may be referred to herein as “bridging” group) and further wherein one or two ring carbon atoms, including an atom in the bridging group, is replaced by a heteroatom selected from N, NH, O, and S(O)n, where n is an integer selected from 0 to 2. Bridged heterocyclyl is optionally substituted with one or two substituents independently selected from alkyl, halo, alkoxy, hydroxy, and cyano unless stated otherwise. Examples include, but are not limited to, 3,8-diazabicyclo[3.2.1]octanyl,
7-oxabicyclo[2.2.1]heptanyl, 2,5-diazabicyclo[2.2.1]heptanyl, 3,6-diazabicyclo-[3.1.1]heptanyl, 2,5-diazabicyclo[2.2.2]octanyl, 3,8-diazabicyclo[3.2.1]octanyl, 6-azabicyclo[3.1.1]heptanyl,
8-azabicyclo[3.2.1]octanyl, and the like.
“Bridged heterocyclylene” means a saturated divalent bicyclic ring having 5 to 9 ring carbon ring atoms in which two non-adjacent ring atoms are linked by a (CRpRp’)n group where n is an integer selected from 1 to 3 and Rp and Rp’ are independently H or methyl (also may be referred to herein as “bridging” group) and further wherein one or two ring carbon atoms, including an atom in the bridging group, is replaced by a heteroatom selected from N, NH, O, and S(O)n, where n is an integer selected from 0 to 2. Bridged heterocyclylene is optionally substituted with one or two substituents independently selected from alkyl, halo, alkoxy, hydroxy, and cyano unless stated otherwise. Examples include, but are not limited to, 3,8-diazabicyclo[3.2.1]octa-3,8- diyl, 7-oxabicyclo[2.2.1]heptan-diyl, 2,5-diazabicyclo[2.2.1]heptan-diyl, 3,6-diazabicyclo- [3.1.1]heptan-diyl, 2,5-diazabicyclo[2.2.2]octan-diyl, 3,8-diazabicyclo[3.2.1]octan-diyl, 6-azabicyclo[3.1.1]heptan-diyl, 8-azabicyclo[3.2.1]octan-diyl, and the like. “Cycloalkyl” means a monocyclic saturated monovalent hydrocarbon radical of three to ten carbon atoms. Examples include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, and the like.
“Cycloalkylalkyl” means an alkyl group, as defined above, substituted with a cycloalkyl as defined above. Examples include, but are not limited to, cyclopropylmethyl, cyclopropylethyl, cyclobutylmethyl, cyclobutylethyl, cyclopentylmethyl, cyclopentylethyl, cyclohexylmethyl, cyclohexylethyl, and the like.
“Cycloalkyloxy or cycloalkoxy” means a -ORP radical where Rp is cycloalkyl as defined above. Examples include, but are not limited to, cyclopropyloxy, cyclobutyloxy, cyclopentyloxy, cyclohexyloxy, and the like.
“Cycloalkylene” means a divalent saturated hydrocarbon radical of three to six carbon atoms, otherwise e.g., 1,1 -cyclopropylene, 1,1 -cyclobutylene, 1,4-cyclohexylene, and the like.
“Carbonyl” means -C(O)-.
“Carboxy” means -COOH.
“Cyclylaminylene” means a saturated divalent monocyclic ring of 4 to 8 ring atoms in which one or two ring atoms are nitrogen, the remaining ring atoms being carbon. More specifically, the term cyclylaminylene includes, but is not limited to, pyrrolidinylene, piperidinylene, homopiperidinylene, piperazinylene, and the like.
“Cyanoalkyl” means alkyl as defined above that is substituted with a cyano e.g., cyanomethyl, cyanoethyl, and the like.
“Cyanoalkyloxy” means an -ORP radical where Rp is cyanoalkyl as defined above, e.g., cyanomethyloxy, cyanoethyloxy, and the like.
“Deuterium” means refers to 2H or D.
“Deuteroalkyl” means a linear or branched saturated monovalent hydrocarbon radical of one to six carbon atoms in which one, two, or three hydrogen atoms are replaced by deuterium, e.g., methyl-d2, methyl-d3, and the like.
“Dialkylamino” means a -NRPRP radical where each Rp is alkyl as defined above and are independently selected, e.g., dimethylamino, methylethylamino, n-propylmethylamino, 2-propylmethylamino, n-, iso-, or /c/V-butylmethylamino, and the like.
“Fused heterocyclyl” means a monovalent bicyclic ring in which two adjacent ring atoms of a saturated monocyclic ring of 4 to 7 ring atoms having one or two heteroatoms independently selected from N, NH, O, and S(O)n (where n is 0, 1, or 2) and the remaining ring atoms being carbon, are fused to two adjacent ring members of a phenyl, or a five or six membered heteroaryl, each as defined herein, unless stated otherwise. The nitrogen atom is optionally oxidized and further wherein one of the carbon ring atoms of the saturated monocyclic ring is optionally replaced by a -C(=O)- group. Representative examples include, but are not limited to, 1, 2,3,4- tetrahydroquinolinyl, 3,4-dihydro-2H-benzo[b][l,4]oxazinyl, 3,4-dihydro-2H-pyrido[3,2- b][l,4]oxazinyl, 4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazinyl, and the like.
“Fused heterocyclylene” means a divalent bicyclic ring in which two adjacent ring atoms of a saturated monocyclic ring of 4 to 7 ring atoms having one or two heteroatoms independently selected from N, NH, O, and S(O)n (where n is 0, 1, or 2) and the remaining ring atoms being carbon, are fused to two adjacent ring members of a phenyl, or a five or six membered heteroaryl, each as defined herein, unless stated otherwise. The nitrogen atom is optionally oxidized and further wherein one of the carbon ring atoms of the saturated monocyclic ring is optionally replaced by a -C(=O)- group. The fused heterocyclylene can be attached at any two atoms of the ring. Representative examples include, but are not limited to, l,2,3,4-tetrahydroquinolin-l,4-diyl, 3,4-dihydro-2H-benzo[b][l,4]oxazin-5,8-diyl, 3,4-dihydro-2H-pyrido[3,2-b][l,4]oxazin-diyl, 4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazin-diyl, and the like.
“Halo” means fluoro, chloro, bromo, or iodo, e.g., fluoro or chloro.
“Haloalkyl” means alkyl radical as defined above, which is substituted with one or more halogen atoms, e.g., one to five halogen atoms, such as fluorine or chlorine, including those substituted with different halogens, e.g., -CH2CI, -CF3, -CHF2, -CH2CF3, -CF2CF3, -CF(CH3)2, and the like. When the alkyl is substituted with only fluoro, it can be referred to in this Application as fluoroalkyl.
“Haloalkoxy” means an -ORP radical where Rp is haloalkyl as defined above e.g., -OCF3, -OCHF2, and the like. When Rp is haloalkyl where the alkyl is substituted with only fluoro (in some examples, one or more fluoro), it is referred to in this Application as fluoroalkoxy.
“Haloalkoxyalkyl” means alkyl as defined above that is substituted with a haloalkoxy as defined above e.g., difluoromethoxymethyl, difluoromethoxyethyl, 2,2-difluoroethoxymethyl, 2,2,2-trifluoroethoxymethyl, and the like.
“Hydroxyalkyl” means a linear or a branched monovalent hydrocarbon radical of one to six carbons substituted with a hydroxy group. Representative examples include, but are not limited to, hydroxymethyl, 2-hydroxy-ethyl, 2-hydroxypropyl, 3 -hydroxypropyl, l-(hydroxymethyl)-2- methylpropyl, 2-hydroxybutyl, 3 -hydroxybutyl, 4-hydroxybutyl, and the like.
“Heteroaryl” means a monovalent monocyclic or fused bicyclic aromatic radical of 5 to 10 ring atoms where one or more, (in one embodiment, one, two, or three), ring atoms are heteroatom selected from N, NH, O, and S, the remaining ring atoms being carbon, unless otherwise stated. Representative examples include, but are not limited to, pyrrolyl, thienyl, thiazolyl, imidazolyl, furanyl, indolyl, isoindolyl, indazolyl, imidazo[l,2-a]pyridinyl, imidazo[l,2-a]pyrazinyl, oxazolyl, isoxazolyl, oxadiazolyl, benzothiazolyl, benzoxazolyl, quinolinyl, isoquinolinyl, pyridinyl, pyrimidinyl, pyrazinyl, pyridazinyl, triazolyl, tetrazolyl, and the like. As defined herein, the terms “heteroaryl” and “aryl” are mutually exclusive. When the heteroaryl ring contains 5- or 6 ring atoms and is a monocyclic ring, it is also referred to herein as “five or six” or “5-or 6”-membered monocyclic heteroaryl. When the heteroaryl ring contains 9- or 10 ring atoms, it is also referred to herein as 9-or 10-membered fused bicyclic heteroaryl.
“Heteroarylene” means a divalent heteroaryl radical as defined above, unless stated otherwise. Representative examples include, but are not limited to, benzimidazoldiyl e.g., benzimidazole-l,5-diyl, and the like. When the heteroarylene ring contains 5- or 6 ring atoms and is a monocyclic ring, it is also referred to herein as monocyclic heteroarylene or as 5-or 6-membered monocyclic heteroarylene e.g., pyrazolyl-diyl (pyrazolyl-1.3-diyl, pyrazolyl-1.4- diyl, pyrazolyl-1.5-diyl and the like) and imidazol-diyl (imidazol-l,2-diyl, imidazol-l,4-diyl, imidazol-l,5-diyl). When the heteroarylene ring contains 9- or 10 ring atoms and is a fused bicyclic ring, it is also referred to herein as 9-or 10-membered fused bicyclic heteroarylene.
“Heterocyclyl” means a saturated, monovalent, monocyclic group of 4 to 8 ring atoms in which one or two ring atoms are heteroatom independently selected from N, NH, O, and S(O)n, where n is an integer selected from 0 to 2, the remaining ring atoms being C, unless stated otherwise. Additionally, one or two ring carbon atoms in the heterocyclylene ring can optionally be replaced by a -C(=O)- group. More specifically, the term heterocyclyl includes, but is not limited to, oxetanyl, piperidinyl, piperazinyl, pyrrolidinyl, azetidinyl, and the like.
“Heterocyclylalkyl” means -(alkylene)-Rp radical where Rp is heterocyclyl as defined above e.g., piperidinylmethyl, pyrrolidinylmethyl, and the like.
“Heterocyclylcarbonyl” means a -C(O)R group where R is heterocyclyl as defined herein. More specifically, the term heterocyclyl includes, but is not limited to, piperidinylcarbonyl, piperazinylcarbonyl, pyrrolidinylcarbonyl, azetidinyl carbonyl, and the like.
“Heterocyclyloxy” means an -OR group where R is heterocyclyl as defined herein. More specifically, the term heterocyclyl includes, but is not limited to, piperidinyloxy, piperazinyloxy, pyrrolidinyloxy, azetidinyloxy, and the like.
“Heterocyclylene” means a saturated, divalent, monocyclic group of 4 to 8 ring atoms in which one or two ring atoms are heteroatom independently selected from N, NH, O, and S(O)n, where n is an integer selected from 0 to 2, the remaining ring atoms being C, unless stated otherwise. Additionally, one or two ring carbon atoms in the heterocyclylene ring can optionally be replaced by a -C(=O)- group. More specifically, the term heterocyclylene includes, but is not limited to,
Figure imgf000014_0001
, piperidin-l,4-diyl, azeti din- 1,3 -diyl, and the like.
“Cs to Ce heteroalkylene” means a linear or branched saturated divalent hydrocarbon radical of three to six carbon atoms where (a) one carbon atom of the linear portion of the divalent hydrocarbon radical is replaced by Xa where Xa is -O-, -S-, -SO-, -SO2-, -CO-, or -NRq- or (b) two adjacent carbon atoms of the linear portion of the divalent hydrocarbon radical are replaced by Xal where Xal is -NRqCO-, -CONRq-, -NRqSO-, -SONRq-, -NRqSO2-, or -SO2NRq- (where each Rq is hydrogen, alkyl, alkyl carbonyl, or alkyl sulfonyl) and furthermore an additional carbon atom, that is not adjacent to Xaor Xal, in the linear portion of the divalent hydrocarbon radical of (a) and (b) above can be replaced by X7 where X7 is -O- or -NRql- (where Rql is hydrogen, alkyl, alkylcarbonyl, or alkyl sulfonyl), provided that the linear portion of C3 to Ce heteroalkylene attaching Z and Ar contains at least three atoms. For sake of clarity, as used in this definition, the linear portion of the C3 to Ce heteroalkylene means the consecutive atoms of the C3 to Ce heteroalkylene connecting Z and Ar e.g., in the structure
Figure imgf000014_0002
, the atoms with * form the linear portion of C5 heteroalkylene. When the C3 to Ce heteroalkylene contains only one or two -O-, it can be referred to herein as “oxoalkylene.” When the C3 to Ce heteroalkylene contains only one or two -NRq- and/or -NRq1-, it can be referred to herein as “aminylalkylene.” When the C3 to Ce heteroalkylene contains only -S-, it can be referred to herein as “sulfanylalkylene.” When the C3 to Ce heteroalkylene contains only -SO-, it can be referred to herein as “sulfinylalkylene.” When the C3 to Ce heteroalkylene contains only -SO2-, it can be referred to herein as “sulfonylalkylene.” Representative examples, of C3 to Ce heteroalkylene include, e.g.,
Figure imgf000015_0001
and the like.
“Phenylene” means divalent phenyl.
The phrase “optionally” or “optional” as used herein means that the subsequently described event or circumstance may but need not occur, and that the description includes instances where the event or circumstance occurs and instances in which it does not. For example, the phrase “alkylene optionally substituted with halo” is intended to cover alkylene that is unsubstituted and alkylene that is substituted with halo.
“Spirocycloalkyl” means a saturated bicyclic monovalent hydrocarbon radical of three to ten carbon atoms where the rings are connected through only one carbon atom, and where the connecting atom is also called the spiroatom, most often a quaternary carbon (“spiro carbon”). Representative examples include, but are not limited to, spiro[2.2]pentanyl, spiro[2.5]octanyl, spiro[4.5]decanyl, spiro[5.5]undecanyl, and the like.
“Spiroheterocyclyl” means a saturated bicyclic monovalent ring having 6 to 10 ring atoms in which one, two, or three ring atoms are heteroatom selected from N, O, and S(O)n, where n is an integer selected from 0 to 2, the remaining ring atoms being C and the rings are connected through only one atom, the connecting atom is also called the spiroatom, most often a quaternary carbon (“spiro carbon”). Spiro heterocyclyl is optionally substituted with one or two substituents independently selected from alkyl, halo, alkoxy, hydroxy, and cyano, unless stated otherwise. Representative examples include, but are not limited to, 2-azaspiro[3.3]heptanyl, 2,6-diazaspiro[3.3]heptanyl, l,7-diazaspiro[3.5]nonanyl, 2,7-diazaspiro[3.5]nonanyl, 3,9-diazaspiro[5.5]undecanyl, and the like.
“Spiro heterocyclylene" means a saturated bicyclic divalent ring having 6 to 10 ring atoms in which one, two, or three ring atoms are heteroatom selected from N, O, and S(O)n, where n is an integer selected from 0 to 2, the remaining ring atoms being C and the rings are connected through only one atom, the connecting atom is also called the spiroatom, most often a quaternary carbon (“spiro carbon”). Spiro heterocyclylene is optionally substituted with one or two substituents independently selected from alkyl, halo, alkoxy, hydroxy, and cyano, unless stated otherwise. Representative examples include, but are not limited to, 2-azaspiro[3.3]heptan-diyl, 2,6-diazaspiro[3.3]heptan-diyl, l,7-diazaspiro[3.5]nonan-diyl, 2,7-diazaspiro[3.5]nonan-diyl, 3,9-diazaspiro[5.5]undecan-diyl, and the like.
“Unsaturated heterocyclylene” means divalent, monocyclic nonaromatic group of 6 to 8 ring atoms having one or two double bonds and in which one or two ring atoms are heteroatom independently selected from N, O, and S(O)n, where n is an integer selected from 0 to 2, the remaining ring atoms being C, unless stated otherwise. Additionally, one or two ring carbon atoms in the heterocyclylene ring can optionally be replaced by a -C(=O)- group.
The present disclosure also includes protected derivatives of compounds of Formula (I) (or any embodiments thereof disclosed herein), or a pharmaceutically acceptable salt thereof. For example, when compounds of Formula (I) contain groups such as hydroxy, carboxy, or any group containing a nitrogen atom(s), these groups can be protected with suitable protecting groups. A comprehensive list of suitable protective groups can be found in T.W. Greene, Protective Groups in Organic Synthesis, 5th Ed., John Wiley & Sons, Inc. (2014), the disclosure of which is incorporated herein by reference in its entirety. The protected derivatives of compounds of the present disclosure can be prepared by methods well known in the art.
The present disclosure also includes polymorphic forms and deuterated forms of the compound of Formula (I) (or any embodiments thereof disclosed herein), or a pharmaceutically acceptable salt thereof.
Certain compounds of the present disclosure can exist as tautomers and/or geometric isomers. All possible tautomers and cis and trans isomers, as individual forms and mixtures thereof are within the scope of this disclosure. For example, a compound of (I) having a hydroxy substituted pyridyl ring can exist as a tautomer as shown below:
Figure imgf000016_0001
The term “prodrug” refers to a compound that is made more active in vivo. Certain compounds Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may also exist as prodrugs, as described in Hydrolysis in Drug and Prodrug Metabolism: Chemistry, Biochemistry, and Enzymology (Testa, Bernard and Mayer, Joachim M. Wiley-VHCA, Zurich, Switzerland 2003). Prodrugs of the compounds described herein are structurally modified forms of the compound that readily undergo chemical changes under physiological conditions to provide the active compound. Prodrugs are often useful because, in some situations, they may be easier to administer than the compound, or parent drug. They may, for instance, be bioavailable by oral administration whereas the parent drug is not. A wide variety of prodrug derivatives are known in the art, such as those that rely on hydrolytic cleavage or oxidative activation of the prodrug. An example, without limitation, of a prodrug would be a compound which is administered as an ester (the “prodrug”), but then is metabolically hydrolyzed to the carboxylic acid, the active entity. Additional examples include peptidyl derivatives of a compound.
A “pharmaceutically acceptable salt” of a compound means a salt that is pharmaceutically acceptable and that possesses the desired pharmacological activity of the parent compound. Such salts include: acid addition salts, formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like; or formed with organic acids such as formic acid, acetic acid, propionic acid, hexanoic acid, cyclopentanepropionic acid, glycolic acid, pyruvic acid, lactic acid, malonic acid, succinic acid, malic acid, maleic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, 3-(4-hydroxybenzoyl)benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, 1,2-ethanedisulfonic acid, 2-hydroxy ethanesulfonic acid, benzenesulfonic acid, 4-chlorobenzenesulfonic acid, 2-naphthalenesulfonic acid, 4-toluenesulfonic acid, camphorsulfonic acid, glucoheptonic acid, 4,4’-methylenebis-(3-hydroxy- 2-ene-l -carboxylic acid), 3 -phenylpropionic acid, trimethylacetic acid, tertiary butylacetic acid, lauryl sulfuric acid, gluconic acid, glutamic acid, hydroxynaphthoic acid, salicylic acid, stearic acid, muconic acid, and the like; or salts formed when an acidic proton present in the parent compound either is replaced by a metal ion, e.g., an alkali metal ion, an alkaline earth ion, or an aluminum ion; or coordinates with an organic base such as ethanolamine, diethanolamine, triethanolamine, tromethamine, A-methylglucamine, and the like. It is understood that the pharmaceutically acceptable salts are non-toxic. Additional information on suitable pharmaceutically acceptable salts can be found in Remington ’s Pharmaceutical Sciences, 17th ed., Mack Publishing Company, Easton, PA, 1985, which is incorporated herein by reference in its entirety.
The compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may have asymmetric centers. Compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) containing an asymmetrically substituted atom may be isolated in optically active or racemic forms. Individual stereoisomers of compounds can be prepared synthetically from commercially available starting materials which contain chiral centers or by preparation of mixtures of enantiomeric products followed by separation such as conversion to a mixture of diastereomers followed by separation or recrystallization, chromatographic techniques, direct separation of enantiomers on chiral chromatographic columns, or any other appropriate method known in the art. All chiral, diastereomeric, all mixtures of chiral or diastereomeric forms, and racemic forms are within the scope of this disclosure, unless the specific stereochemistry or isomeric form is specifically indicated. It will also be understood by a person of ordinary skill in the art that when a compound is denoted as (R) stereoisomer, it may contain the corresponding (S) stereoisomer as an impurity and vice versa.
Certain compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) can exist as tautomers and/or geometric isomers. All possible tautomers and cis and trans isomers, as individual forms and mixtures thereof are within the scope of this disclosure. Additionally, as used herein the term alkyl includes all the possible isomeric forms of said alkyl group albeit only a few examples are set forth. Furthermore, when the cyclic groups such as aryl is substituted, it includes all the positional isomers albeit only a few examples are set forth. Furthermore, all hydrates of a compound of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) are within the scope of this disclosure.
The compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may also contain unnatural amounts of isotopes at one or more of the atoms that constitute such compounds. Unnatural amounts of an isotope may be defined as ranging from the amount found in nature to an amount 100% of the atom in question that differ only in the presence of one or more isotopically enriched atoms. Exemplary isotopes that can be incorporated into compounds of the present disclosure, such as a compound of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, sulfur, fluorine, chlorine, and iodine, such as 2H, 3H, nC, 13C, 14C, 13N, 15N, 150, 17O, 18O, 32P, 33P, 35S, 18F, 36C1, 123I, and 1251, respectively. Isotopically labeled compounds (e.g., those labeled with 3H and 14C) can be useful in compound or substrate tissue distribution assays. Tritiated (i.e., 3H) and carbon-14 (i.e., 14C) isotopes can be useful for their ease of preparation and detectability. Further, substitution with (or isotopically enriched for) heavier isotopes such as deuterium (i.e., 2H) may afford certain therapeutic advantages resulting from greater metabolic stability (e.g., increased in vivo half-life or reduced dosage requirements). In some embodiments, in compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds, including in Table 1 below, one or more hydrogen atoms are replaced by 2H or 3H, or one or more carbon atoms are replaced by 13C- or 14C-enriched carbon. Positron emitting isotopes such as 15O, 13N, nC, and 15F are useful for positron emission tomography (PET) studies to examine substrate receptor occupancy. Isotopically labeled compounds can generally be prepared by following procedures analogous to those disclosed in the Schemes or in the Examples herein, by substituting an isotopically labeled reagent for a non-isotopically labeled reagent.
A “pharmaceutically acceptable carrier or excipient” means a carrier or an excipient that is useful in preparing a pharmaceutical composition that is generally safe, non-toxic and neither biologically nor otherwise undesirable, and includes a carrier or an excipient that is acceptable for veterinary use as well as human pharmaceutical use.
“A pharmaceutically acceptable carrier/excipienf ’ as used in the specification and claims includes both one and more than one such excipient. The term “about,” as used herein, is intended to qualify the numerical values which it modifies, denoting such a value as variable within a margin of error. When no particular margin of error, such as a standard deviation to a mean value given in a chart or table of data, is recited, the term “about” should be understood to mean that range which would encompass ± 10%, preferably ± 5%, the recited value and the range is included.
Certain structures provided herein are drawn with one or more floating substituents. Unless provided otherwise or otherwise clear from the context, the substituent(s) may be present on any atom of the ring to which it is attached, where chemically feasible and valency rules permitting.
For example, in the structure:
Figure imgf000019_0001
, the Raa substituent, and similarly the Rbb substituent, can replace hydrogen of any CH that is part of the benzo portion of the bicyclic ring that is not already substituted with Rbb (in the case of Raa), and similarly with Raa (in the case of Rbb).
Additionally, as used throughout the application, including in the embodiments, when a group is drawn out as divalent, the left bond of the divalent group is attached to the group which is to its left in the remainder of the molecule, and the right bond of the divalent group is attached to the group which is to its right in the remainder of the molecule. For example, in, in the following divalent groups:
Figure imgf000020_0001
of E3 ubiquitin ligase ligand group of formula (i) the
Figure imgf000020_0002
bond on the left of (a) and (b) is attached to the following ring:
Figure imgf000020_0003
and the on the right side of (a) and (b) is attached to Z of the Formula (I) structure:
Figure imgf000020_0004
. Similarly, for -Z-alk-Ar-, the bond on left side (i.e., Z) is attached to the group on its left side i.e., ring A of formula (i) or ring B of formula (ii) and the bond on right side (i.e., Ar is attached to -SO2- that is attached to an atom of Hy. For example, when -Z-alk-Ar- a group of formula:
Figure imgf000020_0005
and ring A of Degron of formula (i) is a group of formula
Figure imgf000020_0006
bond of
Figure imgf000020_0007
piperidinyl is attached to benzo portion of ring (a) and the bond of phenyl is attached to -SO2- that is attached to Hy.
The term “disease” as used herein is intended to be generally synonymous, and is used interchangeably with, the terms “disorder,” “syndrome,” and “condition” (as in medical condition), in that all reflect an abnormal condition of the human or animal body or of one of its parts that impairs normal functioning, is typically manifested by distinguishing signs and symptoms, and causes the human or animal to have a reduced duration or quality of life.
The term “combination therapy” means the administration of two or more therapeutic agents to treat a disease or disorder described in the present disclosure. Such administration encompasses co-administration of these therapeutic agents in a substantially simultaneous manner, such as in a single capsule having a fixed ratio of active ingredients or in multiple, separate capsules for each active ingredient. In addition, such administration also encompasses use of each type of therapeutic agent in a sequential manner. In either case, the treatment regimen will provide beneficial effects of the drug combination in treating the conditions or disorders described herein.
The term “patient” is generally synonymous with the term “subject” and includes all mammals including humans. Examples of patients include humans, livestock, such as cows, goats, sheep, pigs, and rabbits, and companion animals such as dogs, cats, rabbits, and horses. Preferably, the patient is a human.
“Treating” or “treatment” of a disease includes:
(1) preventing the disease, i.e., causing the clinical symptoms of the disease not to develop in a mammal that may be exposed to or predisposed to the disease but does not yet experience or display symptoms of the disease;
(2) inhibiting the disease, i.e., delaying, arresting (stabilizing), or reducing the development or severity of the disease or its clinical symptoms; or
(3) relieving the disease, i.e., causing regression of the disease or its clinical symptoms.
In one embodiment, treating or treatment of a disease includes inhibiting the disease, i.e., delaying, arresting or reducing the development or severity of the disease or its clinical symptoms; or relieving the disease, i.e., causing regression of the disease or its clinical symptoms.
A “therapeutically effective amount” means the amount of a compound of the present disclosure and/or a pharmaceutically acceptable salt thereof that, when administered to a patient for treating a disease, is sufficient to affect such treatment for the disease. The “therapeutically effective amount” will vary depending on the compound, the disease and its severity and the age, weight, etc., of the mammal to be treated.
A “condition associated with an autoimmune disease” means a condition that a patient with an autoimmune disease is susceptible to, e.g., sepsis, or a condition that is caused by the autoimmune disease, e.g., uveitis. The term “degrading” and “degrade,” or any variation of these terms in relation to CDK2, CDK4, CDK6, and CDK1, means any measurable decrease in the concentration of CDK2, CDK4, CDK6, and CDK1, respectively, in a sample over time. For example, there may be a decrease of about 5%, 10%, 15%, 20%, 25%, 30%, 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 95%, 99%, or more, or any range derivable therein, in CDK4 concentration in a sample containing CDK4, respectively, and a compound disclosed herein in the Summary, Embodiments, and Compound Table 1 disclosed herein as compared to an equivalent sample comprising CDK4, in the absence of said compound. The % degradation can be determined as described in Biological Example 2 below.
A given degrader is considered to be selective for CDK4 if its inhibitory activity, IC50, for CDK4 is at least 10-fold, 20-fold, 30-fold, 40-fold, 50-fold, at least 60-fold, at least 70-fold, at least 80-fold, at least 90-fold, or at least 100-fold more than its inhibitory activity, IC50, for a CDK that is other than CDK4, e.g., one, two, or all of CDK6, CDK2 and CDK1. The IC50 activity of a compound of Formula (I) in CDK1, CDK2, CDK4, and CDK6 can be determined as described in Biological Example 1 below using KYSE520, OVCAR3, T47D, and THP1 cell lines, respectively.
“E3 ubiquitin ligase” refers to a family of proteins that operate in conjunction with El ubiquitin-activating enzyme and E2 ubiquitin-conjugating enzyme, assist or directly catalyze the covalent ligation of ubiquitin to a lysine residue of a substrate protein. E3 ubiquitin ligases directly bind to substrate proteins and thus confer substrate specificity for the ubiquitination process. Ubiquitination can serve as a versatile signal mark for substrate proteins, which are targeted to degradation by proteasome or other regulations ranging from translocation to transcription. The cereblon (CRBN) and von Hippel-Lindau (VHL) proteins are substrate recognition subunits of two ubiquitously expressed and biologically important Cullin RING E3 ubiquitin ligase complexes. Cereblon forms an E3 ubiquitin ligase complex with damaged DNA binding protein 1 (DDB1), Cullin-4A (CUL4A), and regulator of cullins 1 (ROC1). VHL is part of the E3 ligase complex VCB, which also consists of elongins B and C, Cul2 and Rbxl.
Embodiments:
Embodiment A
In embodiments Al to A207, the present disclosure includes:
Al. In embodiment Al, provided is a compound of Formula (I), or a pharmaceutically acceptable salt thereof, as described in the second aspect of the Summary.
A2. In embodiment A2, the compound of embodiment Al, or a pharmaceutically acceptable salt thereof, is wherein R1 is hydrogen, linear alkyl, or deuterated linear alkyl. A3. In embodiment A3, the compound of embodiment Al or A2, or a pharmaceutically acceptable salt thereof, is wherein R1 is linear alkyl.
A4. In embodiment A4, the compound of embodiment Al, or a pharmaceutically acceptable salt thereof, is wherein R1 is linear haloalkyl.
A5. In embodiment A5, the compound of embodiment Al or A2, or a pharmaceutically acceptable salt thereof, is wherein R1 is hydrogen.
A6. In embodiment A6, the compound of any one of embodiments Al to A5, or a pharmaceutically acceptable salt thereof, is wherein R1 is hydrogen, methyl, ethyl, propyl, methyl- ds, difluoromethyl, trifluoromethyl, 2,2-difluoroethyl, or 2,2,2-trifluoroethyl, unless stated otherwise.
A7. In embodiment A7, the compound of any one of embodiments Al to A6, or a pharmaceutically acceptable salt thereof, is wherein R1 is hydrogen, methyl, methyl-ds, difluoromethyl, or 2,2,2-trifluoroethyl, unless stated otherwise.
A8. In embodiment A8, the compound of any one of embodiments Al, A2, A3, A6 and A7, or a pharmaceutically acceptable salt thereof, is wherein R1 is methyl.
A9. In embodiment A9, the compound of any one of embodiments Al, A4, A6, and A7, or a pharmaceutically acceptable salt thereof, is wherein R1 is 2,2,2-trifluoroethyl.
A10. In embodiment A10, the compound of embodiment Al, or a pharmaceutically acceptable salt thereof, is wherein R1 is cyanoalkyl, hydroxyalkyl, alkoxyalkyl, cycloalkylalkyl, arylalkyl, or heterocyclylalkyl.
Al l. In embodiment Al l, the compound of embodiment Al or A10, or a pharmaceutically acceptable salt thereof, is wherein R1 is linear cyanoalkyl.
A12. In embodiment A12, the compound of embodiment Al or A10, or a pharmaceutically acceptable salt thereof, is wherein R1 is linear hydroxyalkyl.
A13. In embodiment A13, the compound of embodiment Al or A10, or a pharmaceutically acceptable salt thereof, is wherein R1 is cycloalkylalkyl where the alkyl of cycloalkylalkyl is linear.
A14. In embodiment A14, the compound of embodiment Al or A10, or a pharmaceutically acceptable salt thereof, is wherein R1 is arylalkyl where the alkyl of arylalkyl is linear.
A15. In embodiment A15, the compound of embodiment Al, or a pharmaceutically acceptable salt thereof, is wherein R1 is heteroaryl alkyl where the alkyl of heteroaryl alkyl is linear. A16. In embodiment A16, the compound of embodiment Al or A10, or a pharmaceutically acceptable salt thereof, is wherein R1 is heterocyclylalkyl where the alkyl of heterocyclylalkyl is linear.
A17. In embodiment A17, the compound of any one of embodiments Al and A10 to Al 6, or a pharmaceutically acceptable salt thereof, is wherein R1 is cyanomethyl, cyanoethyl, hydroxyethyl, methoxyethyl, cyclopropylmethyl, benzyl, 4-pyridylmethyl, or 4-piperidylmethyl.
Al 8. In embodiment Al 8, the compound of any one of embodiments Al and A10 to A17, or a pharmaceutically acceptable salt thereof, is wherein R1 is cyanomethyl or methoxyethyl.
A19. In embodiment A19, the compound of embodiment Al, A4, A6, or A7, or a pharmaceutically acceptable salt thereof, is wherein R2 is hydroxyalkyl.
A20. In embodiment A20, the compound of any one of embodiments Al to Al 8, or a pharmaceutically acceptable salt thereof, is wherein R2 is alkoxyalkyl or haloalkoxy alkyl.
A21. In embodiment A21, the compound of any one of embodiments Al to Al 8 and A20, or a pharmaceutically acceptable salt thereof, is wherein R2 is haloalkoxyalkyl.
A22. In embodiment A22, the compound of any one of embodiments Al to Al 8, and A20, or a pharmaceutically acceptable salt thereof, is wherein R2 is alkoxyalkyl.
A22a. In embodiment A22a, the compound of any one of embodiments Al to A22, or a pharmaceutically acceptable salt thereof, is wherein R2 is hydroxymethyl, hydroxy ethyl, methoxymethyl, methoxyethyl, methoxypropyl, ethoxymethyl, ethoxyethyl, difluoromethoxymethyl, trifluoromethoxymethyl, 2,2-difluoroethoxymethyl, or 2,2,2- tri fluoroethoxymethyl .
A22b. In embodiment A22b, the compound of any one of embodiments Al to Al 8 and A20 to A22a, or a pharmaceutically acceptable salt thereof, is wherein R2 is ethoxyethyl, difluoromethoxymethyl, trifluoromethoxymethyl, 2,2-difluoroethoxymethyl, or 2,2,2- tri fluoroethoxymethyl .
A23. In embodiment A23, the compound of any one of embodiments Al to A22b, or a pharmaceutically acceptable salt thereof, is wherein R2a is hydrogen.
A24. In embodiment A24, the compound of any one of embodiments Al to A22b, or a pharmaceutically acceptable salt thereof, is wherein R2a is deuterium.
A25. In embodiment A25, the compound of any one of embodiments Al to A24, or a pharmaceutically acceptable salt thereof, is wherein Hy is heterocyclylene, phenylene, spiro heterocyclylene, bridged heterocyclylene, or cycloalkylene, wherein each of the aforementioned rings is substituted with Ra, Rb, and Rc where Ra and Rb are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and Rc is hydrogen. A26. In embodiment A26, the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof, is wherein Hy is heterocyclylene substituted with Ra, Rb, and Rc where Ra and Rb are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and Rc is hydrogen.
A27. In embodiment A27 , the compound of any one of embodiments Al to A26, or a pharmaceutically acceptable salt thereof, is wherein the heterocyclylene of Hy is pyrrolidin-1,3- diyl, or piperidin-l,4-diyl, each ring being substituted with Ra, Rb, and Rc where Ra and Rb are independently hydrogen, deuterium, methyl, fluoro, methoxy, or hydroxy, Rc is hydrogen, and -SO2- is attached to the nitrogen atom of the piperidin-l,4-diyl or pyrrolidin-l,3-diyl ring of
Hy.
A28. In embodiment A28, the compound of any one of embodiments Al to K 1 or a pharmaceutically acceptable salt thereof, is wherein the heterocyclylene of Hy is:
Figure imgf000025_0001
where the N atom of the pyrrolidin- 1,3 -diyl or piperidin-l,4-diyl rings is attached to -SO2-
A29. In embodiment A29, the compound of any one of embodiments Al to A28, or a pharmaceutically acceptable salt thereof, is wherein the heterocyclylene of Hy is:
Figure imgf000025_0002
where the N atom of the pyrrolidin- 1,3 -diyl or piperidin-l,4-diyl rings is attached to -SO2-.
A29a. In embodiment A29a, the compound of any one of embodiments Al to A29, or a pharmaceutically acceptable salt thereof, is wherein the heterocyclylene of Hy is:
Figure imgf000025_0003
where the N atom of the piperidin-l,4-diyl ring is attached to -SO2-.
A30. In embodiment A30, the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof, is wherein Hy is bridged heterocyclylene substituted with Ra, Rb, and Rc where Rc is hydrogen. A31. In embodiment A31, the compound of any one of embodiments Al to A25 and A30, or a pharmaceutically acceptable salt thereof, is wherein the bridged heterocyclylene of Hy is a ring of formula:
Figure imgf000026_0001
where each ring is substituted with Ra, Rb, and Rc where Rc is hydrogen, and the nitrogen atom of each ring is attached to -SO2-.
A32. In embodiment A32, the compound of embodiment A30 or A31, or a pharmaceutically acceptable salt thereof, is wherein Ra and Rb are independently hydrogen, deuterium, methyl, fluoro, methoxy, or hydroxy.
A33. In embodiment A33, the compound of embodiment A30, A31 or A32, or a pharmaceutically acceptable salt thereof, is wherein Rb is hydrogen.
A34. In embodiment A34, the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof, is wherein Hy is cycloalkylene substituted with Ra, Rb, and Rc where Ra is deuterium, methyl, fluoro, methoxy, or hydroxy and Rb and Rc are hydrogen.
A35. In embodiment A35, the compound of any one of embodiments Al to A25 and A34, or a pharmaceutically acceptable salt thereof, is wherein the cycloalkylene of Hy is cyclohexylene.
A36. In embodiment A36, the compound of any one of embodiments Al to A25, A34, and A35, or a pharmaceutically acceptable salt thereof, is wherein the cycloalkylene of Hy is
Figure imgf000026_0002
denotes bond of -SO2-.
A37. In embodiment A37, the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof, is wherein Hy is arylene wherein the arylene is phenylene substituted with Ra, Rb, and Rc where Ra and Rb are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and Rc is hydrogen.
A38. In embodiment A38, the compound of any one of embodiments Al to A25, or a pharmaceutically acceptable salt thereof, is wherein Hy is spiro heterocyclylene (preferably, 2-azaspiro[3.3]heptan-2-yl) substituted with Ra, Rb, and Rc where Ra and Rb are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and Rc is hydrogen. A39. In embodiment A39, the compound of embodiment A37, or a pharmaceutically acceptable salt thereof, is wherein the phenylene of Hy is 1,4-phenylene according to structure
Figure imgf000027_0001
denotes bond to -SCh-where Ra is hydrogen, fluoro, methyl or methoxy and Rb is hydrogen.
A39a. In embodiment A39a, the compound of any one of embodiments Al to A24, or a pharmaceutically acceptable salt thereof, is wherein Hy is fused heterocyclylene substituted with Ra, Rb, and Rc where Ra and Rb are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and Rc is hydrogen.
A39b. In embodiment A39b, the compound of any one of embodiments Al to A24, or a pharmaceutically acceptable salt thereof, is wherein Hy is bicyclic heterocyclylene substituted with Ra, Rb, and Rc where Ra and Rb are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and Rc is hydrogen.
A40. In embodiment A40, the compound of any one of embodiments Al to A39b, or a pharmaceutically acceptable salt thereof, is wherein the Degron is an E3 ubiquitin ligase ligand of formula (i):
Figure imgf000027_0002
A41. In embodiment A41, the compound of any one of embodiments Al to A40, or a pharmaceutically acceptable salt thereof, is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is a group of formula (a):
Figure imgf000027_0003
A42. In embodiment A42, the compound of any one of embodiments Al to A41, or a pharmaceutically acceptable salt thereof, is wherein R4 and R5 are independently hydrogen or alkyl. A43. In embodiment A43, the compound of any one of embodiments Al to A42, or a pharmaceutically acceptable salt thereof, is wherein R4 and R5 are hydrogen.
A44. In embodiment A44, the compound of any one of embodiments Al to 42, or a pharmaceutically acceptable salt thereof, is wherein R4 is hydrogen and R5 is methyl. A45. In embodiment A45, the compound of any one of embodiments Al to A41, or a pharmaceutically acceptable salt thereof, is wherein R4 and R5 together with the carbon to which they are attached form >C =0.
A46a. In embodiment A46a, the compound of embodiments Al to A40, or a pharmaceutically acceptable salt thereof, is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is a group of formula (b):
Figure imgf000028_0001
A46. In embodiment A46, the compound of any one of embodiments Al to A40 and A46a, or a pharmaceutically acceptable salt thereof, is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is a group of formula (b):
Figure imgf000028_0002
A47. In embodiment A47, the compound of any one of embodiments Al to A40, A46a, and A46, or a pharmaceutically acceptable salt thereof, is wherein R6 is hydrogen.
A48. In embodiment A48, the compound of any one of embodiments Al to A40, A46a, and A46, or a pharmaceutically acceptable salt thereof, wherein R6 is alkyl, preferably methyl.
A49. In embodiment A49, the compound of any one of embodiments Al to A48, or a pharmaceutically acceptable salt thereof, is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000029_0001
A50. In embodiment A50, the compound of any one of embodiments Al to A49, or a pharmaceutically acceptable salt thereof, is wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000029_0002
A51. In embodiment A51, the compound of any one of embodiments Al to A50, or a pharmaceutically acceptable salt thereof, is wherein ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000029_0003
A52. In embodiment A52, the compound of any one of embodiments Al to A51, or a pharmaceutically acceptable salt thereof, is wherein ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000030_0001
i.e., where Rbb, Rcc, and Rdd are hydrogen.
A52a. In embodiment A52a, the compound of any one of embodiments Al to A52, or a pharmaceutically acceptable salt thereof, is wherein ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000030_0002
i.e., where Rbb is hydrogen.
A53. In embodiment A53, the compound of any one of embodiments Al A52, or a pharmaceutically acceptable salt thereof, is wherein ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000030_0003
i.e., where Rbb is hydrogen.
A54. In embodiment A54, the compound of any one of embodiments Al to A52, or a pharmaceutically acceptable salt thereof, is wherein ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000030_0004
i.e., where Rbb is hydrogen. A55. In embodiment A55, the compound of any one of embodiments Al to A52, or a pharmaceutically acceptable salt thereof, is wherein ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000031_0001
i.e., where Raa and Rbb are hydrogen.
A56. In embodiment A56, the compound of any one of embodiments Al to A52, or a pharmaceutically acceptable salt thereof, is wherein ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000031_0002
i.e., where Rcc and Rdd are hydrogen.
A57. In embodiment A57, the compound of any one of embodiments Al to A52, or a pharmaceutically acceptable salt thereof, is wherein ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000031_0003
i.e., where Rcc and Rdd are hydrogen.
A58. In embodiment A58, the compound of any one of embodiments Al to A54, or a pharmaceutically acceptable salt thereof, is wherein Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen, alkyl, alkoxy, halo, haloalkyl, and haloalkoxy, unless stated otherwise i.e., in embodiments A52 to A54, Rbb, Rcc, and Rdd are hydrogen.
A59. In embodiment A59, the compound of any one of embodiments Alto A54, or a pharmaceutically acceptable salt thereof, is wherein Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen, alkyl, alkoxy, halo, haloalkyl, and cyano, unless stated otherwise.
A60. In embodiment A60, the compound of any one of embodiments Al to A54, A58, and A59, or a pharmaceutically acceptable salt thereof, is wherein Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen, methyl, methoxy, ethoxy, fluoro, trifluoromethyl, difluoromethyl, and trifluoromethoxy, unless stated otherwise. A61. In embodiment A61, the compound of any one of embodiments Al to A54, and A58 to A60, or a pharmaceutically acceptable salt thereof, is wherein Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen and methyl, unless stated otherwise.
A62. In embodiment A62, the compound of any one of embodiments Al to A54, and A58 to A60, or a pharmaceutically acceptable salt thereof, is wherein Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen and methoxy, unless stated otherwise.
A63. In embodiment A63, the compound of any one of embodiments Al to A54, and A58 to A60, or a pharmaceutically acceptable salt thereof, is wherein Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen and fluoro, unless stated otherwise.
A64. In embodiment A64, the compound of any one of embodiments Al to A54, and A58 to A60, or a pharmaceutically acceptable salt thereof, is wherein Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen, trifluoromethyl, and difluoromethyl, unless stated otherwise.
A65. In embodiment A65, the compound of any one of embodiments Al to A54, A58, and A60, or a pharmaceutically acceptable salt thereof, is wherein Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen and trifluoromethoxy, unless stated otherwise.
A66. In embodiment A66, the compound of any one of embodiments Al to A54, and A58 to A60, or a pharmaceutically acceptable salt thereof, is wherein Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen, fluoro, and trifluoromethyl, unless stated otherwise.
A67. In embodiment A67, the compound of any one of embodiments Al to A39b, or a pharmaceutically acceptable salt thereof, is wherein the Degron is an E3 ubiquitin ligase ligand of formula (ii):
Figure imgf000032_0001
(ii).
A68. In embodiment A68, the compound of any one of embodiments Al to A39b and A41 to A67, or a pharmaceutically acceptable salt thereof, is wherein Ya is CH.
A69. In embodiment A69, the compound of any one of embodiments Al to A39b and A41 to A67, or a pharmaceutically acceptable salt thereof, is wherein Ya is N.
A70. In embodiment A70, the compound of any one of embodiments Al to A39b and A41 to A69, or a pharmaceutically acceptable salt thereof, is wherein Za is a bond, -NH-, -O-, or -NHC(O)-. A71. In embodiment A71, the compound of any one of embodiments Al to A39b and A41 to A70, or a pharmaceutically acceptable salt thereof, is wherein Za is a bond, -NH-, or -NHC(O)-.
A72. In embodiment A72, the compound of any one of embodiments Al to A39b and A41 to A71, or a pharmaceutically acceptable salt thereof, is wherein Za is a bond.
A73. In embodiment A73, the compound of any one of embodiments Al to A39b and A41 to A71, or a pharmaceutically acceptable salt thereof, is wherein Za is -NH-, or -NHC(O)-.
A74. In embodiment A74, the compound of any one of embodiments Al to A39b, A41 to A71, and A73, or a pharmaceutically acceptable salt thereof, is wherein Za is -NH-.
A74a. In embodiment A74a, the compound of any one of embodiments Al to A39b, A41 to A71, and A73, or a pharmaceutically acceptable salt thereof, is wherein Za is -NHC(O)-.
A75. In embodiment A75, the compound of any one of embodiments Al to A39b and A41 to A74a, or a pharmaceutically acceptable salt thereof, is wherein ring B is phenylene substituted with Ree and Rff.
A76. In embodiment A76, the compound of any one of embodiments Al to A39b, and A41 to A74a, or a pharmaceutically acceptable salt thereof, is wherein ring B is cyclylaminylene substituted with Ree and Rff.
A77. In embodiment A77, the compound of any one of embodiments Al to A39b and A41 to A74a, or a pharmaceutically acceptable salt thereof, is wherein ring B is 5- or 6-membered monocyclic heteroarylene or a 9- or 10-membered fused bicyclic heteroarylene, wherein each heteroarylene ring contains one to three nitrogen ring atoms and each ring is substituted with Ree and Rff.
A78. In embodiment A78, the compound of any one of embodiments Al to A39b, A41 to A74a, and A77, or a pharmaceutically acceptable salt thereof, is wherein ring B is 5- or 6- membered monocyclic heteroarylene containing one or two nitrogen ring atoms substituted with Ree and Rff.
A79. In embodiment A79, the compound of any one of embodiments Al to A39b, A41 to A74a, and A77, or a pharmaceutically acceptable salt thereof, is wherein ring B is a 9- or 10-membered fused bicyclic heteroarylene containing one to three nitrogen ring atoms and substituted with Ree and Rff.
A80. In embodiment A80, the compound of any one of embodiments Al to A39b, A41 to A74a, A77, and A79, or a pharmaceutically acceptable salt thereof, is wherein ring B is a 9- or 10-membered fused bicyclic heteroarylene containing one or two nitrogen ring atoms and substituted with Ree and Rff.
A81. In embodiment A81, the compound of any one of embodiments Al to A39b and A41 to A80, or a pharmaceutically acceptable salt thereof, is wherein the E3 ubiquitin ligase ligand of formula (ii) is:
Figure imgf000034_0001
A82-1. In embodiment A82-1, the compound of any one of embodiments Al to A39b and A41 to A81, or a pharmaceutically acceptable salt thereof, is wherein the E3 ubiquitin ligase ligand of formula (ii) is:
Figure imgf000034_0002
where ring B is cyclylaminylene. For sake of clarity, it is to be understood that Ree and/or
Rff are/is hydrogen when they are/is not drawn out in a structure. A82. In embodiment A82, the compound of any one of embodiments Al to A39b and A41 to A82-1, or a pharmaceutically acceptable salt thereof, is wherein the E3 ubiquitin ligase ligand of formula (ii) is:
Figure imgf000035_0001
where ring B is cyclylaminylene.
A82A. In embodiment A82A, the compound of any one of embodiments Al to A39b and A41 to A82, or a pharmaceutically acceptable salt thereof, is wherein the E3 ubiquitin ligase ligand of formula
Figure imgf000035_0002
A83. In embodiment A83, the compound of any one of embodiments Al to A39b and A41 to A82, or a pharmaceutically acceptable salt thereof, is wherein the E3 ubiquitin ligase ligand of formula (ii) is:
Figure imgf000036_0001
A83A. In embodiment A83A, the compound of any one of embodiments Al to A39b and A41 to A83, or a pharmaceutically acceptable salt thereof, is wherein the E3 ubiquitin ligase ligand of formula
Figure imgf000036_0002
A84. In embodiment A84, the compound of any one of embodiments Al to A39b and A41 to A83 A, or a pharmaceutically acceptable salt thereof, is wherein each Ree and Rff are independently selected from hydrogen, alkyl, alkoxy, halo, cyano, haloalkyl, and haloalkoxy unless stated otherwise. A85. In embodiment A85, the compound of any one of embodiments Al to A39b and
A41 to A84, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are independently selected from hydrogen, alkyl, cycloalkyl, alkoxy, halo, haloalkyl, and cyano unless stated otherwise. A86. In embodiment A86, the compound of any one of embodiments Al to A39b and A41 to A85, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are independently selected from hydrogen, methyl, ethyl, isopropyl, cyclopropyl, methoxy, ethoxy, fluoro, chloro, trifluoromethyl, 2,2,2-trifluoroethyl, difluoromethyl, difluoromethoxy, trifluoromethoxy, and cyano unless stated otherwise.
A87. In embodiment A87, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are independently selected from hydrogen, methyl, ethyl, and isopropyl unless stated otherwise.
A88. In embodiment A88, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are independently selected from hydrogen and methoxy unless stated otherwise.
A89. In embodiment A89, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are independently selected from hydrogen, methyl, ethyl, isopropyl, chloro, and fluoro unless stated otherwise.
A90. In embodiment A90, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein one of Ree and Rff is hydrogen or fluoro and the other of Ree and Rff is selected from hydrogen, trifluoromethyl, 2,2,2-trifluoroethyl, and difluoromethyl unless stated otherwise.
A91. In embodiment A91, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are independently selected from hydrogen, difluoromethoxy, and trifluoromethoxy unless stated otherwise.
A92. In embodiment A92, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are independently selected from hydrogen, chloro, fluoro, and trifluoromethyl unless stated otherwise.
A93. In embodiment A93, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are hydrogen.
A94. In embodiment A94, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are chloro unless stated otherwise.
A95. In embodiment A95, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are fluoro unless stated otherwise. A96. In embodiment A96, the compound of any one of embodiments Al to A39b and A41 to A86, or a pharmaceutically acceptable salt thereof, is wherein Ree and Rff are independently trifluoromethyl or 2,2,2-trifluoroethyl unless stated otherwise.
A97. In embodiment A97, the compound of any one of embodiments Al to A96, or a pharmaceutically acceptable salt thereof, is wherein Ar is phenylene, monocyclic heteroarylene, bridged heterocyclylene, or heterocyclylene, where each ring is substituted with R1, Rk, and Rm where Rm is hydrogen.
A98. In embodiment A98, the compound of any one of embodiments Al to A97, or a pharmaceutically acceptable salt thereof, is wherein Ar is phenylene of formula
Figure imgf000038_0001
or
Figure imgf000038_0002
phenylene where alk and SO2 are attached at meta position or para position of the phenylene ring) substituted with R>, Rk, and Rm where R1 and Rk are independently selected from hydrogen, alkyl, alkoxy, halo, cyano, haloalkyl, and haloalkoxy and Rm is hydrogen.
A99. In embodiment A99, the compound of any one of embodiments Al to A98, or a pharmaceutically acceptable salt thereof, is wherein the phenylene of Ar is
Figure imgf000038_0003
or
Figure imgf000038_0004
substituted with R1, Rk, and Rm where R1 and Rk are independently selected from hydrogen, deuterium, methyl, methoxy, fluoro, chloro, cyano, difluoromethyl, trifluoromethyl, difluoromethoxy, and trifluoromethoxy and Rm is hydrogen.
Al 00. In embodiment Al 00, the compound of any one of embodiments Al to A99, or a pharmaceutically acceptable salt thereof, is wherein the phenylene of Ar is
Figure imgf000038_0005
or
Figure imgf000038_0006
substituted with R1, Rk, and Rm where R1 and Rk independently selected from hydrogen, fluoro, cyano, or trifluoromethyl and Rm is hydrogen. A101-1. In embodiment A101-1, the compound of any one of embodiments Al to
Al 00, or a pharmaceutically acceptable salt thereof, is wherein the phenylene of Ar is
Figure imgf000039_0001
A101. In embodiment A101, the compound of any one of embodiments Al to
Al 00, or a pharmaceutically acceptable salt thereof, is wherein the phenylene of Ar is
Figure imgf000039_0002
Al 02. In embodiment Al 02, the compound of any one of embodiments Al to A97, or a pharmaceutically acceptable salt thereof, is wherein Ar is monocyclic heteroarylene (such as imidazol-l,5-diyl, pyridin-2,4-diyl, pyridin-2,6-diyl, pyridin-2,5-diyl, or pyri din-3, 5 -diyl) substituted with R1, Rk, and Rm where R1 and Rk are independently selected from hydrogen, alkyl, alkoxy, halo, haloalkyl, cyano, and haloalkoxy and Rm is hydrogen.
A103. In embodiment A103, the compound of any one of embodiments Al to A97, and A99 to Al 02, or a pharmaceutically acceptable salt thereof, is wherein the monocyclic heteroarylene of Ar is imidazol-2,5-diyl, pyridin-2,4-diyl, pyridin-2,6-diyl, pyridin-2,5-diyl, or pyridin-3,5-diyl, each ring substituted with R1, Rk, and Rm where R1 and Rk are independently selected from hydrogen, methyl, methoxy, fluoro, chloro, difluoromethyl, trifluoromethyl, 2,2,2-trifluoroethyl, difluoromethoxy, and trifluoromethoxy and Rm is hydrogen.
Al 04. In embodiment Al 04, the compound of any one of embodiments Al to A97 and A99 to A103, or a pharmaceutically acceptable salt thereof, is wherein the monocyclic heteroarylene of Ar is imidazol-2,5-diyl, pyridin-2,4-diyl, pyridin-2,6-diyl, or pyridin-3,5-diyl, each ring substituted with R>, Rk, and Rm where R1 and Rk are independently selected from hydrogen, methyl, methoxy, fluoro, chloro, difluoromethyl, trifluoromethyl, difluoromethoxy, and trifluoromethoxy and Rm is hydrogen.
Al 05. In embodiment Al 05, the compound of any one of embodiments Al to A97, or a pharmaceutically acceptable salt thereof, is wherein Ar is heterocyclylene substituted with R1, Rk, and Rm where R1 and Rk are independently selected from hydrogen, methyl, methoxy, fluoro, chloro, difluoromethyl, trifluoromethyl, 2,2,2-trifluoroethyl, difluoromethoxy, and trifluoromethoxy and Rm is hydrogen. Al 06. In embodiment Al 06, the compound of any one of embodiments Al to A97, A99 to A101, and A103 to A105, or a pharmaceutically acceptable salt thereof, is wherein the heterocyclylene of Ar is divalent azetidinyl, pyrrolidinyl, piperazinyl, or piperidinyl.
A107. In embodiment A107, the compound of any one of embodiments Al to A97, or a pharmaceutically acceptable salt thereof, is wherein Ar is bridged heterocyclylene.
A108. In embodiment A108, the compound of any one of embodiments Al to A97, A99 to A101, A103, A104, A106, and A107 or a pharmaceutically acceptable salt thereof, is wherein the bridged heterocyclylene of Ar is selected from:
Figure imgf000040_0001
Al 09. In embodiment Al 09, the compound of any one of embodiments Al to Al 08, or a pharmaceutically acceptable salt thereof, is wherein Z is cycloalkylene selected from cyclopropylene, cyclobutylene, cyclopentylene, and cyclohexylene and substituted as defined therein.
A110. In embodiment Al 10, the compound of any one of embodiments Al to Al 09, or a pharmaceutically acceptable salt thereof, is wherein the cycloalkylene of Z is independently selected from 1,3-cyclopentylene, 1,3-cyclohexylene, and 1,4-cyclohexylene.
Al l i. In embodiment Al l i, the compound of any one of embodiments Al to Al 08 and A110, or a pharmaceutically acceptable salt thereof, is wherein Z is phenylene or monocyclic heteroarylene (such as imidazoldiyl, pyridindiyl and pyrimidindiyl) and substituted with Rd and Re as defined therein.
Al 12. In embodiment Al 12, the compound of any one of embodiments Al to A108 and Al 11, or a pharmaceutically acceptable salt thereof, is wherein Z is monocyclic heteroarylene selected from imidazol-2,5-diyl, pyridin-2,4-diyl, pyridin-2,6-diyl, and pyri din-3, 5 -diyl.
Al 13. In embodiment Al 13, the compound of any one of embodiments Al to A108 and Al 11, or a pharmaceutically acceptable salt thereof, is wherein Z is 1,3-phenylene or 1,4-phenylene.
Al 14. In embodiment Al 14, the compound of any one of embodiments Al to A108, or a pharmaceutically acceptable salt thereof, is wherein Z is heterocyclylene, bridged heterocyclylene, or spiro heterocyclylene, each ring substituted with Rd and Re as defined therein.
Al 15. In embodiment Al 15, the compound of any one of embodiments Al to A108 and Al 14, or a pharmaceutically acceptable salt thereof, is wherein the heterocyclylene, bridged heterocyclylene, and spiro heterocyclylene of Z are selected from:
Figure imgf000041_0001
respectively, wherein each ring is substituted with Rd and Re independently selected from hydrogen, deuterium, alkyl, and halo.
Al 16. In embodiment Al 16, the compound of any one of embodiments Al to Al 08, Al 14, and Al 15, or a pharmaceutically acceptable salt thereof, is wherein the heterocyclylene, bridged heterocyclylene, and spiro heterocyclylene of Z are independently selected from:
Figure imgf000041_0002
respectively.
Al 17. In embodiment Al 17, the compound of any one of embodiments Al to A108 and
Al 14 to Al 16, or a pharmaceutically acceptable salt thereof, is wherein Z is heterocyclylene selected from:
Figure imgf000042_0001
Al 18. In embodiment Al 18, the compound of any one of embodiments Al to A108 and
Al 14 to Al 17, or a pharmaceutically acceptable salt thereof, is wherein Z is heterocyclylene,
Figure imgf000042_0002
Al 19. In embodiment Al 19, the compound of any one of embodiments Al to Al 08 or a pharmaceutically acceptable salt thereof, is wherein Z is -O-, -NH-, or -NCH3-. A120. In embodiment A120, the compound of any one of embodiments Al to A98 and
Al 14, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000042_0003
wherein each Rd, Re, and Rk are independently selected from hydrogen, alkyl, halo, haloalkyl, haloalkoxy, alkoxy, and cyano and R> is hydrogen. A121. In embodiment A121, the compound of any one of embodiments Al to A98, Al 14, and A120, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000043_0001
wherein each Rd, Re, and Rk are independently selected from hydrogen, alkyl, halo, haloalkyl, haloalkoxy, alkoxy, and cyano and R> is hydrogen.
A122. In embodiment A122, the compound of any one of embodiments Al to A98, Al 14, and A120, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000043_0002
wherein each Rd, Re, and Rk are independently selected from hydrogen, alkyl, halo, haloalkyl, haloalkoxy, alkoxy, and cyano and R> is hydrogen.
A123. In embodiment A123, the compound of any one of embodiments Al to A98, Al 14, A120, and A121, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000043_0003
wherein Rd, Re, and Rk are as defined therein. A124. In embodiment A124, the compound of any one of embodiments Al to A98, Al 14,
A120, and A121, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000043_0004
wherein Rd, Re, and Rk are as defined therein. A125. In embodiment A125, the compound of any one of embodiments Al to A98, Al 14, A120, and A121, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000044_0001
wherein Rd, Re, and Rk are as defined therein.
A126. In embodiment A126, the compound of any one of embodiments Al to A98, Al 14, A120, and A121, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000044_0002
wherein Rd, Re, and Rk are as defined therein.
A127. In embodiment A127, the compound of any one of embodiments Al to A98, Al 14, A120, and A121, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000044_0003
wherein Rd, Re, and Rk are as defined therein.
A128. In embodiment A128, the compound of any one of embodiments Al to A98, Al 14, A120, and A122, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000044_0004
wherein Rd, Re, and Rk are as defined therein.
A129. In embodiment A129, the compound of any one of embodiments Al to A98, Al 14, A120, and A122, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000044_0005
wherein Rd, Re, and Rk are as defined therein. A130. In embodiment A130, the compound of any one of embodiments Al to A98, Al 14,
A120, and A122, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000045_0001
wherein Rd, Re, and Rk are as defined therein. A131. In embodiment A131, the compound of any one of embodiments Al to A98, Al 14,
A120, and A122, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000045_0002
wherein Rd, Re, and Rk are as defined therein.
A132. In embodiment A132, the compound of any one of embodiments Al to A98, Al 14, A120, and A122, or a pharmaceutically acceptable salt thereof, is wherein -Z-alk-Ar-SCh- is:
Figure imgf000045_0003
wherein Rd, Re, and Rk are as defined therein.
A133. In embodiment A133, the compound of any one of embodiments Al to A98, Al 14, A120, A121, and A123 to A127, or a pharmaceutically acceptable salt thereof, is wherein
Figure imgf000045_0004
A134. In embodiment A134, the compound of any one of embodiments Al to A98, Al 14, A120, A121, A123 to A127, and A133, or a pharmaceutically acceptable salt thereof, is wherein
Figure imgf000045_0005
A135. In embodiment A135, the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkenylene substituted with Rf where Rf is hydrogen.
A136. In embodiment A136, the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkenylene substituted with Rf where Rf is fluoro or cyano.
A137. In embodiment A137, the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rg, Rh, and R1 are hydrogen.
A138. In embodiment A138, the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rg, Rh, and R1 are hydrogen or halo, provided at least one of Rg, Rh, and R1 is halo.
A139. In embodiment A139, the compound of embodiment A138, or a pharmaceutically acceptable salt thereof, is wherein the halo of the at least one of Rg, Rh, and R1 is fluoro.
A140. In embodiment A140, the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rh is other than hydrogen and R1 is hydrogen or when Rg and Rh are attached to the same carbon or to adjacent carbon atoms of the linear portion of the C3 to Ce alkylene, Rg and Rh together with the carbon atom(s) to which they are attached can form cycloalkylene or heterocyclylene where the cycloalkylene and heterocyclylene formed by Rg and Rh are substituted with R9 and R10.
A141. In embodiment A141, the compound of any one of embodiments A140, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rh is other than hydrogen and R1 is hydrogen.
A142. In embodiment A142, the compound of any one of embodiments Al to 141, or a pharmaceutically acceptable salt thereof, is wherein the C3 to Ce alkenylene and C3 to Ce alkylene of alk are linear C3 to Ce alkenylene and linear C3 to Ce alkylene, respectively, and substituted as defined therein.
A143. In embodiment A143, the compound of any one of embodiments Al to A136 and A140 to A142, or a pharmaceutically acceptable salt thereof, is wherein the linear C3 to Ce alkenylene of alk is -CH=C(Rf)CH2- and the linear C3 to Ce alkylene of alk is -CH2CH(Rh)CH2-, - CH2CH2CH(Rh)-, -CH2C(Rg)(Rh)CH2-, -CH2CH2C(Rg)(Rh)- where Rh is other than hydrogen and R1 is hydrogen. A144. In embodiment A144, the compound of any one of embodiments Al to A134 and A140 to A143, or a pharmaceutically acceptable salt thereof, is wherein the linear C3 to Ce alkylene of alk is -CH2CH(Rh)CH2- where Rh is other than hydrogen and R1 is hydrogen.
A145. In embodiment A145, the compound of any one of embodiments Al to A134 and A140 to A144, or a pharmaceutically acceptable salt thereof, is wherein Rg of linear C3 to Ce alkylene of alk is hydrogen, deuterium, or halo and Rh of linear C3 to Ce alkylene of alk is halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, cyanoalkyloxy, phenyl, heteroaryl, heterocyclyl, or bridged heterocyclyl, each ring substituted as defined therein unless stated otherwise.
A146. In embodiment A146, the compound of any one of embodiments Al to A134 and A140 to A145, or a pharmaceutically acceptable salt thereof, is wherein Rg of linear C3 to Ce alkylene of alk is hydrogen and Rh of linear C3 to Ce alkylene of alk is halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, dialkylaminocarbonyl, alkylcarbonylamino, cyano, phenyl, heteroaryl, heterocyclyl, or bridged heterocyclyl, each ring substituted as defined therein.
A147. In embodiment A147, the compound of any one of embodiments Al to A134 and A140 to A146, or a pharmaceutically acceptable salt thereof, is wherein Rg of linear C3 to Ce alkylene of alk is hydrogen and Rh of linear C3 to Ce alkylene of alk is halo, haloalkoxy, alkoxy, hydroxy, dialkylaminocarbonyl, cyano, heterocyclyl, or heteroaryl, each ring substituted as defined therein.
A148. In embodiment A148, the compound of any one of embodiments Al to A134 and A140 to A147, or a pharmaceutically acceptable salt thereof, is wherein the heteroaryl, heterocyclyl, and bridged heterocyclyl of Rh of linear C3 to Ce alkylene of alk, when present, are five or six membered ring and each ring is substituted as defined therein.
A149. In embodiment A149, the compound of any one of embodiments Al to A134 and A140 to A148, or a pharmaceutically acceptable salt thereof, is wherein Rg of linear C3 to Ce alkylene of alk is hydrogen, deuterium, or fluoro unless stated otherwise and Rh of linear C3 to Ce alkylene of alk is fluoro, cyclopropyl, cyclobutyl, cyclopropyloxy, cyclobutyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, aminocarbonyl, methylaminocarbonyl, dimethylaminocarbonyl, diethylaminocarbonyl, methylcarbonylamino, ethylcarbonylamino, phenyl, pyrazolyl, furanyl, thiazolyl, pyridinyl, pyrrolidinyl, 2-oxopyrrolidinyl, piperidinyl, piperazinyl, or tetrahydrofuranyl, where each ring of Rh is substituted with R7 and R8 independently selected from hydrogen, deuterium, methyl, methoxy, fluoro, difluoromethyl, trifluoromethyl, difluoromethoxy, trifluoromethyl, hydroxy, amino, methylamino, dimethylamino and cyano, unless stated otherwise.
A149A. In embodiment A149A, the compound of any one of embodiments Al to A134 and A140 to A149, or a pharmaceutically acceptable salt thereof, is wherein Rg of linear C3 to Ce alkylene of alk is hydrogen, deuterium, or fluoro, unless stated otherwise and Rh of linear C3 to Ce alkylene of alk is fluoro, cyclopropyl, cyclopropyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, methylaminocarbonyl, dimethylaminocarbonyl, methylcarbonylamino, phenyl, pyrazol-l-yl, pyrrazol-4-yl, pyridin-4-yl, pyrrolidin-l-yl, 2-oxopyrrolidin-l-yl, where each ring of Rh is substituted with R7 and R8 independently selected from hydrogen, deuterium, methyl, or fluoro, unless stated otherwise.
A150. In embodiment A150, the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof, is wherein alk is branched C4 to Ce alkylene substituted with Rg, Rh, and R1.
A151. In embodiment A151, the compound of any one of embodiments Al to A138 and Al 50, or a pharmaceutically acceptable salt thereof, is wherein the C3 to Ce alkenylene and C3 to Ce alkylene of alk are branched C4 to Ce alkenylene and C4 to Ce alkylene, respectively, where the C4 to Ce alkylene is substituted with Rg, Rh, and R1 as defined therein.
A152. In embodiment A152, the compound of any one of embodiments Al to A138, A150, and Al 51, or a pharmaceutically acceptable salt thereof, is wherein the branched C4 to Ce alkenylene of alk is -CH2CH2C(CH3)=C(Rf)-, -CH2C(CH3)=C(Rf)-, or -CH2C(=CH2)CH2- and the branched C4 to C6 alkylene of alk is -CH2C(CH3)(Rh)CH2-, -CH2C(C2H5)(Rh)CH2-, -CH2CH(CH2Rh)CH2-, -CH2CH(CH2CH2Rh)CH2-, -CH2C(CH3)(CH2Rh)CH2-, -CH2C(C2H5)(CH2Rh)CH2-, -CH2C(CH3)(CH2CH2Rh)CH2-, -CH2CH(CH3)CH(CH2Rh)-, -CH2CH2C(CH3)(CH2Rh)-, -CH2CH(CH3)C(Rg)(Rh)-, -CH2CH(C2H5)C(Rg)(Rh)-. -CH2CH(C(Rg)(Rh)(Ri))CH(CH3)-, -CH2C(CH3)(C(Rg)(Rh)(Ri))CH(CH3)-, -CH2CH(C(Rg)(Rh)(Ri))CH2-, -CH2CH2CH(C(Rg)(Rh)(Ri))-, -CH2CH2CH(C(Rg)(Rh)(Ri))CH2-, or -CH2CH2CH2CH(C(Rg)(Rh)(Ri))- where Rg, Rh, and R1 are as defined therein.
A153. In embodiment A153, the compound of any one of embodiments Al to A138 and Al 50 to 152, or a pharmaceutically acceptable salt thereof, is wherein the branched C4 to Ce alkenylene of alk is -CH2C(CH3)=C(Rf)- or -CH2C(=)CH2- and the branched C4 to Ce alkylene of alk is -CH2C(CH3)(Rh)CH2-, -CH2CH(CH2Rh)CH2-, -CH2CH(CH2CH2Rh)CH2-, -CH2CH(C(Rg)(Rh)(Ri))CH2-, -CH2CH2CH(C(Rg)(Rh)(Ri))CH2-, or -CH2CH2CH2CH(C(Rg)(Rh)(R1))- where Rg, Rh, and R1 are as defined therein. A154. In embodiment A154, the compound of any one of embodiments Al to A138 and Al 50 to Al 53, or a pharmaceutically acceptable salt thereof, is wherein the Rg and R1 of branched C4 to Ce alkylene of alk are independently hydrogen or halo (unless stated otherwise) and Rh of branched C4 to Ce alkylene of alk is hydrogen, halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, cyanoalkyloxy, phenyl, heteroaryl, heterocyclyl, heterocyclyloxy, heterocyclylcarbonyl, or bridged heterocyclyl (unless stated otherwise), where each ring of Rh is substituted as defined therein.
A155. In embodiment A155, the compound of any one of embodiments Al to A138 and Al 50 to Al 54, or a pharmaceutically acceptable salt thereof, is wherein the Rg and R1 of branched C4 to Ce alkylene of alk are hydrogen or fluoro (unless stated otherwise) and Rh of branched C4 to Ce alkylene of alk is hydrogen, halo, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, phenyl, heteroaryl, heterocyclyl, heterocyclyloxy, heterocyclylcarbonyl, or bridged heterocyclyl (unless stated otherwise), where each ring of Rh is substituted as defined therein.
A156. In embodiment A156, the compound of any one of embodiments Al to A138 and Al 50 to Al 55, or a pharmaceutically acceptable salt thereof, is wherein Rg and R1 of branched C4 to Ce alkylene of alk are hydrogen or fluoro (unless stated otherwise) and Rh of branched C4 to Ce alkylene of alk is hydrogen, halo, alkoxy, hydroxy, dialkylaminocarbonyl, cyano, or heteroaryl substituted as defined therein.
A157. In embodiment A157, the compound of any one of embodiments Al to A138 and Al 50 to Al 55, or a pharmaceutically acceptable salt thereof, is wherein alk is branched C4 to Ce alkylene substituted as defined therein and the heteroaryl, heterocyclyl, by itself or as part of heterocyclyloxy, heterocyclylcarbonyl, and bridged heterocyclyl of Rh of branched C4 to Ce alkylene of alk, when present, are five or six membered ring and each ring of Rh is substituted as defined therein.
A158. In embodiment A158, the compound of any one of embodiments Al to A138 and Al 50 to Al 57, or a pharmaceutically acceptable salt thereof, is Rg and R1 of branched C4 to Ce alkylene of alk are independently hydrogen, deuterium, or fluoro (unless stated otherwise) and Rh of branched C4 to Ce alkylene of alk, unless stated otherwise, is hydrogen, deuterium, fluoro, cyclopropyl, cyclobutyl, cyclopropyloxy, cyclobutyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, aminocarbonyl, methylaminocarbonyl, dimethylaminocarbonyl, diethylaminocarbonyl, methylcarbonylamino, ethylcarbonylamino, phenyl, pyrazolyl, thiazolyl, furanyl, pyridinyl, pyrrolidinyl, 2-oxopyrrolidinyl, piperidinyl, piperazinyl, or tetrahydrofuranyl, where each ring of Rh is substituted with R7 and R8 independently selected from hydrogen, deuterium, methyl, methoxy, fluoro, difluoromethyl, trifluoromethyl, difluoromethoxy, trifluoromethyl, hydroxy, amino, methylamino, dimethylamino and cyano, unless stated otherwise.
A158A. In embodiment A158A, the compound of any one of embodiments Al to A138 and A150 to A158, or a pharmaceutically acceptable salt thereof, is wherein Rg and R1 of branched C4 to Ce alkylene of alk, unless stated otherwise, is hydrogen or fluoro and Rh of branched C4 to Ce alkylene of alk, when present and unless stated otherwise, is hydrogen, fluoro, hydroxy, methoxy, cyano, pyrazolyl-l-yl, or methylaminocarbonyl.
A159. In embodiment A159, the compound of any one of embodiments Al to A134 and A140, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rg and Rh are attached to the same carbon or to adjacent carbon atoms of the linear portion of the C3 to Ce alkylene and Rg and Rh together with the carbon atom(s) to which they are attached can form cycloalkylene or heterocyclylene where the cycloalkylene and heterocyclylene formed by Rg and Rh are substituted with R9 and R10.
A160. In embodiment A160, the compound of any one of embodiments Al to A134, A140, and Al 59, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rg and Rh are attached to the same carbon atom of the linear portion of C3 to Ce alkylene and together with the carbon atom to which they are attached can form cycloalkylene substituted with R9 and R10.
A161. In embodiment A161, the compound of any one of embodiments Al to A134, A140, and Al 59, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rg and Rh are attached to the same carbon atom of the linear portion of the C3 to Ce alkylene and together with the carbon atom to which they are attached can form heterocyclylene substituted with R9 and R10.
A162. In embodiment A162, the compound of any one of embodiments Al to A134, A140, and Al 59, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rg and Rh are attached to adjacent carbon atoms of the linear portion of the C3 to Ce alkylene and together with the carbon atoms to which they are attached can form cycloalkylene substituted with R9 and R10.
A163. In embodiment A163, the compound of any one of embodiments Al to A134, A140, and Al 59, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rg and Rh are attached to adjacent same carbon atoms of the linear portion of the C3 to Ce alkylene and together with the carbon atoms to which they are attached can form heterocyclylene substituted with R9 and R10.
A164. In embodiment A164, the compound of any one of embodiments Al to A134, A140, and A159 to A161, or a pharmaceutically acceptable salt thereof, is wherein Rg and Rh are attached to the same carbon atom of the linear portion C3 to Ce alkylene and together with the carbon atom to which they are attached can form cycloalkylene of formula:
Figure imgf000051_0001
or heterocyclylene of formula:
Figure imgf000051_0002
where each ring is substituted with R9 and R10, preferably R9 is hydrogen, halo, methyl or ethyl and R10 is hydrogen.
A165. In embodiment A165, the compound of any one of embodiments Al to A134, A140, A159, A162, and A163, or a pharmaceutically acceptable salt thereof, is wherein Rg and Rh are attached to adjacent carbon atoms of the linear portion of the C3 to Ce alkylene and together with the carbon atoms to which they are attached can form cycloalkylene of formula:
Figure imgf000051_0003
or heterocyclylene of formula:
Figure imgf000051_0004
where each ring is substituted with R9 and R10, preferably R9 is hydrogen, halo, methyl or ethyl and R10 is hydrogen.
A166. In embodiment A166, the compound of any one of embodiments Al to A134, or a pharmaceutically acceptable salt thereof, is wherein the alk is C3 to Ce heteroalkylene substituted with Rg, Rh, and R1. Al 67. In embodiment Al 67, the compound of any one of embodiments Al to Al 34 and Al 66, or a pharmaceutically acceptable salt thereof, is wherein the alk is C3 to Ce heteroalkylene substituted with Rg, Rh, and R1 where Rg, Rh, and R1 are hydrogen.
A168. In embodiment A168, the compound of any one of embodiments Al to A134 and Al 66, or a pharmaceutically acceptable salt thereof, is wherein the alk is C3 to Ce heteroalkylene substituted with Rg, Rh, and R1 where Rg, Rh, and R1 are hydrogen or halo, provided at least one of Rg, Rh, and R1 is halo.
A169. In embodiment A169, the compound of any one of embodiments Al to A134 and A166, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce heteroalkylene substituted with Rg, Rh, and R1 where Rh is other than hydrogen and R1 is hydrogen, or when Rg and Rh are attached to the same carbon or to adjacent carbon atoms of the linear portion of the C3 to Ce heteroalkylene, Rg and Rh together with the carbon atom to which they are attached can form cycloalkylene or heterocyclylene where the cycloalkylene and heterocyclylene are substituted with R9 and R10.
A169a.In embodiment A169a, the compound of any one of embodiments Al to A134 and Al 69, or a pharmaceutically acceptable salt thereof, is wherein Rg and Rh are attached to the same carbon atom of the linear portion of the C3 to Ce heteroalkylene and together with the carbon atom to which they are attached can form cycloalkylene of formula:
Figure imgf000052_0001
or heterocyclylene of formula:
Figure imgf000052_0002
where each ring is substituted with R9 and R10, preferably R9 is hydrogen, halo, methyl or ethyl and R10 is hydrogen.
A169b.In embodiment A169b, the compound of any one of embodiments Al to A134 and Al 69, or a pharmaceutically acceptable salt thereof, is wherein Rg and Rh are attached to adjacent carbon atoms of the linear portion of the C3 to Ce heteroalkylene and together with the carbon atoms to which they are attached can form cycloalkylene of formula:
Figure imgf000053_0001
or heterocyclylene of formula:
Figure imgf000053_0002
where each ring is substituted with R9 and R10, preferably R9 is hydrogen, halo, methyl or ethyl and R10 is hydrogen.
A170. In embodiment A170, the compound of any one of embodiments Al to A134, Al 66, and Al 69, or a pharmaceutically acceptable salt thereof, is wherein alk is C3 to Ce heteroalkylene substituted with Rg, Rh, and R1 where Rh is other than hydrogen and R1 is hydrogen.
A171. In embodiment A171, the compound of any one of embodiments Al to 134, A142 to A149A, A151 to A156, A158, A158A, and A166 to A170, or a pharmaceutically acceptable salt thereof, is wherein the C3 to Ce heteroalkylene of alk is linear C3 to Ce heteroalkylene and for sake of clarity, since this embodiment is only characterizing that the C3 to Ce heteroalkylene of alk is linear in nature, it is understood the linear C3 to Ce heteroalkylene is substituted with Rg, Rh, and R1 as provided in the referred to embodiments.
A172. In embodiment A172, the compound of any one of embodiments Al to A134, A142 to A149A, A152 to A156, A158, A158A, A166 to A169, A170, and A171, or a pharmaceutically acceptable salt thereof, is wherein the linear C3 to Ce heteroalkylene of alk is -CH2CH2XaCH2-, -CH2XaCH2CH2-, -CH2CH2CH2Xa-, -XaCH2CH2CH2-, -XyCH2CH2Xa-, -XyCH2CH2XaCH2-, -CH2CH2CH2XaCH2-, -CH2XaCH2-, -XaCH2CH2-, -CH2CH2Xa-, -CH2CONRqCH2-, -CH2SO2NRqCH2-, -CH2NRqCOCH2-, -CH2NRqSO2CH2-, -CH2CH2CH2NRqCO-, -CH2CONRq-, -CH2SO2NRq-, -CH2NRqCO-, -CH2NRqSO2-, -CONRqCH2-, -SO2NRqCH2-, -NRqCOCH2-, or -NRqSO2CH2- substituted with Rg, Rh, and R‘ as defined therein and Xa is -NRq-, -O-, -S-, -SO-, -SO2-, or -CO-.
A173. In embodiment A173, the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, and A166 to A172, or a pharmaceutically acceptable salt thereof, is wherein Rq is hydrogen, methyl, ethyl, methylcarbonyl, or methyl sulfonyl. A174. In embodiment A174, the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A173, or a pharmaceutically acceptable salt thereof, is wherein the linear C3 to Ce heteroalkylene of alk is -CH2XaCH2-, -XaCH2CH2-, -CH2CH2Xa-, -CH2CH(Rh)Xa-, -XaCH(Rh)CH2-, -CH2CONRq-, -CH2SO2NR -CH2NRqCO-, -CH2NRqSO2-, -CONRqCH2-, -SO2NRqCH2-, -NRqCOCH2-, or -NRqSO2CH2- where Xa is -S-, -SO2-, -O-, or -NRq-.
A175. In embodiment A175, the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A174, or a pharmaceutically acceptable salt thereof, is wherein the linear C3 to Ce heteroalkylene of alk is -CH2CH2CH2Xa- or -CH2CH2Xa
A176. In embodiment A176, the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A175, or a pharmaceutically acceptable salt thereof, is wherein Rg of linear C3 to Ce heteroalkylene of alk is hydrogen or halo (unless stated otherwise) and Rh of linear C3 to Ce heteroalkylene of alk is (unless stated otherwise) hydrogen, halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, cyanoalkyloxy, phenyl, heteroaryl, heterocyclyl, or bridged heterocyclyl, each ring substituted as defined therein and R1 is hydrogen.
Al 77. In embodiment Al 77, the compound of any one of embodiments Al to Al 34, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A176, or a pharmaceutically acceptable salt thereof, is wherein Rg of linear C3 to Ce heteroalkylene of alk is hydrogen or fluoro (unless stated otherwise) and Rh of linear C3 to Ce heteroalkylene of alk (unless stated otherwise) is hydrogen halo, haloalkoxy, alkoxy, hydroxy, dialkylaminocarbonyl, cyano, or heteroaryl substituted as defined therein.
A178. In embodiment A178, the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A177, or a pharmaceutically acceptable salt thereof, is wherein the heteroaryl, heterocyclyl, and bridged heterocyclyl of Rh of linear C3 to Ce heteroalkylene of alk, when present, are five or six membered ring and each ring is substituted as defined therein.
Al 79. In embodiment Al 79, the compound of any one of embodiments Al to Al 34, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170 to A178, or a pharmaceutically acceptable salt thereof, is wherein Rg of linear C3 to Ce heteroalkylene of alk, unless stated otherwise, is hydrogen, deuterium, or fluoro, and Rh of linear C3 to Ce heteroalkylene of alk, unless stated otherwise, is hydrogen, deuterium, fluoro, cyclopropyl, cyclobutyl, cyclopropyloxy, cyclobutyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, aminocarbonyl, methylaminocarbonyl, dimethylaminocarbonyl, diethylaminocarbonyl, methylcarbonylamino, ethylcarbonylamino, phenyl, pyrazolyl, thiazolyl, furanyl, pyridinyl, pyrrolidinyl, 2-oxopyrrolidinyl, piperidinyl, piperazinyl, or tetrahydrofuranyl, where each ring substituted with R7 and R8 independently selected from hydrogen, deuterium, methyl, methoxy, fluoro, difluoromethyl, trifluoromethyl, difluoromethoxy, trifluoromethyl, hydroxy, amino, methylamino, dimethylamino, and cyano.
A180. In embodiment A180, the compound of any one of embodiments Al to A134, A142 to A149A, A151 to A156, A158, A158A, A166 to A169, and A170to A179, or a pharmaceutically acceptable salt thereof, is wherein Rg of linear C3 to Ce heteroalkylene of alk is hydrogen and Rh of linear C3 to Ce heteroalkylene of alk is fluoro, cyclopropyl, cyclopropyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, methylaminocarbonyl, dimethylaminocarbonyl, methylcarbonylamino, phenyl, pyrazol-l-yl, pyrrazol-4-yl, pyridin-4-yl, pyrrolidin-l-yl, 2-oxopyrrolidin-l-yl, each ring substituted with R7 and R8 independently selected from hydrogen, deuterium, methyl, or fluoro.
A181. In embodiment A181, the compound of any one of embodiments A172 to A180, or a pharmaceutically acceptable salt thereof, is wherein Xa is -NRq-, -O-, -S-, or -SO2-, preferably -NRq-, -O-, or -S-.
A182. In embodiment A182, the compound of any one of embodiments A172 to A181, or a pharmaceutically acceptable salt thereof, is wherein Xa is -NRq- where Rq is hydrogen or methyl.
A183. In embodiment A183, the compound of any one of embodiments A172 to A181, or a pharmaceutically acceptable salt thereof, is wherein Xa is -O-.
A184. In embodiment A184, the compound of any one of embodiments A172 to A181, or a pharmaceutically acceptable salt thereof, is wherein Xa is -S-.
A185. In embodiment A185, the compound of any one of embodiments A172 to A184, or a pharmaceutically acceptable salt thereof, is wherein X7 is -O-.
A186. In embodiment A186, the compound of any one of embodiments A172 to A184, or a pharmaceutically acceptable salt thereof, is wherein X7 is -NH- or -NCH3-.
Al 87. In embodiment Al 87, the compound of any one of embodiments Al to 134, Al 66 to Al 69, and Al 70, or a pharmaceutically acceptable salt thereof, is wherein the C3 to Ce heteroalkylene of alk is branched C4 to Ce heteroalkylene.
A188. In embodiment A188, the compound of any one of embodiments Al to A134, Al 66 to Al 69, Al 70, and Al 87, or a pharmaceutically acceptable salt thereof, is wherein the branched C4 to Ce heteroalkylene of alk is -CH2XaCH(CH3)CH2-, -CH2XyCH2CH(CH3)Xa-, -CH2CH2CH(CH3)Xa-, -XaCH(CH3)CH2CH2-, -XyCH2CH(CH3)Xa-, -XyCH(CH3)CH2Xa-, -CH2CH2CH2CH(CH3)Xa-, -XaCH(CH2Rh)CH2-, -CH2CH(CH2Rh)Xa-, -XaCH(CH2CH2Rh)CH2-, -CH2CH(CH2CH2Rh)Xa-, -CH2C(CH3)(CH3)Xa-, -XaC(CH3)(CH3)CH2-, -CH(CH3)CH(CH3)Xa-, -CONRqCH2CH(CH3)Xa-, -CH2NRqCOCH(CH3)CH2-, or -NRqCOCH(CH3)CH2- where Xa is -NRq-, -O-, -S-, -SO-, -SO2-, or -CO-.
A189. In embodiment A189, the compound of any one of embodiments Al to 134, A166 to Al 69, Al 70, Al 87, and Al 88, or a pharmaceutically acceptable salt thereof, is wherein the branched C4 to Ce heteroalkylene of alk is -CH2C(CH3)(CH3)Xa-, -CH(CH3)(CHCH3)Xa-, -XaCH(CH2CH2Rh)CH2-, -CH2CH(CH2CH2Rh)Xa-, -XaCH(CH2Rh)CH2-, or -CH2CH(CH2Rh)Xa-.
Al 90. In embodiment Al 90, the compound of any one of embodiments Al to 134, Al 66 to A169, A170,A173, and A187 to A189, or a pharmaceutically acceptable salt thereof, is wherein the Rg and R1 of branched C4 to Ce heteroalkylene of alk are hydrogen or halo (unless stated otherwise) and Rh of branched C4 to Ce heteroalkylene of alk is hydrogen, halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, cyanoalkyloxy, phenyl, heteroaryl, heterocyclyl, heterocyclyloxy, heterocyclylcarbonyl, or bridged heterocyclyl substituted as defined therein.
A191. In embodiment A191, the compound of any one of embodiments Al to 134, Al 66 to A169, A170, A173, and A187 to A190,or a pharmaceutically acceptable salt thereof, is wherein the Rg and R1 of branched C4 to Ce heteroalkylene of alk are hydrogen or fluoro (unless stated otherwise) and Rh (unless stated otherwise) is hydrogen, halo, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, phenyl, heteroaryl, heterocyclyl, heterocyclyloxy, heterocyclylcarbonyl, or bridged heterocyclyl, substituted as defined therein.
Al 92. In embodiment Al 92, the compound of any one of embodiments Al to 134, Al 66 to A169, A170, A173, and A187 to A191, or a pharmaceutically acceptable salt thereof, is wherein Rg and R1 are hydrogen and Rh is hydrogen, heteroaryl, alkylaminocarbonyl, or cyano.
A193. In embodiment A193, the compound of any one of embodiments Al to 134, A166 to A169, A170, A173, and A187 to A192, or a pharmaceutically acceptable salt thereof, is wherein the heteroaryl and heterocyclyl of branched C4 to Ce heteroalkylene of alk, by itself or as part of heterocyclyloxy, heterocyclylcarbonyl, and bridged heterocyclyl, when present, are five or six membered ring and each ring is substituted as defined therein.
Al 94. In embodiment Al 94, the compound of any one of embodiments Al to 134, Al 66 to A169, A170, A173, and A187 to A193, or a pharmaceutically acceptable salt thereof, is wherein Rh of branched C4 to Ce heteroalkylene of alk, unless stated otherwise, is hydrogen, deuterium, fluoro, cyclopropyl, cyclobutyl, cyclopropyloxy, cyclobutyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, aminocarbonyl, methylaminocarbonyl, dimethylaminocarbonyl, diethylaminocarbonyl, methylcarbonylamino, ethylcarbonylamino, phenyl, pyrazolyl, thiazolyl, furanyl, pyrrolidinyl, pyridinyl, piperidinyl, piperazinyl, or tetrahydrofuranyl, where each ring substituted with R7 and R8 independently selected from hydrogen, deuterium, methyl, methoxy, fluoro, difluoromethyl, trifluoromethyl, difluoromethoxy, trifluoromethyl, hydroxy, amino, methylamino, dimethylamino and cyano.
A195. In embodiment A195, the compound of any one of embodiments A188 to A194, or a pharmaceutically acceptable salt thereof, is wherein Xa is -NRq-, -O-, -S-, or -SO2-, preferably -NRq- or -O-.
A196. In embodiment A196, the compound of any one of embodiments A188 to A195, or a pharmaceutically acceptable salt thereof, is wherein Xa is -NRq- where Rq is hydrogen or methyl.
A197. In embodiment A197, the compound of any one of embodiments A188 to A195, or a pharmaceutically acceptable salt thereof, is wherein Xa is -O-.
A198. In embodiment A198, the compound of any one of embodiments A188 to A195, or a pharmaceutically acceptable salt thereof, is wherein Xa is -S-.
A199. In embodiment A199, the compound of any one of embodiments A188 to A198, or a pharmaceutically acceptable salt thereof, is wherein X7 is -O-.
A200. In embodiment A200, the compound of any one of embodiments Al 88 to Al 98, or a pharmaceutically acceptable salt thereof, is wherein X7 is -NH- or -NCH3-.
A201. In embodiment A201, the compound of any one of embodiments Al to A200, or a pharmaceutically acceptable salt thereof, is wherein alk is:
Figure imgf000057_0001
Figure imgf000058_0001
A202. In embodiment A202, the compound of any one of embodiments Al to A201, or a pharmaceutically acceptable salt thereof, is wherein alk is:
Figure imgf000059_0001
A203. In embodiment A203, the compound of any one of embodiments Al to A202, or a pharmaceutically acceptable salt thereof, is wherein alk is:
Figure imgf000060_0001
A204. In embodiment A204, the compound of any one of embodiments Al to A203, or a pharmaceutically acceptable salt thereof, is wherein Degron is the E3 ubiquitin ligase ligand selected from:
Figure imgf000060_0002
Figure imgf000061_0001
where Ree is hydrogen, methyl, ethyl, cyclopropyl, or 2,2,2-trifluoroethyl and Rff is hydrogen, methyl, cyclopropyl, fluoro, cyano, methoxy, difluoromethoxy, trifluoromethoxy, or trifluoromethyl.
A205. In embodiment A205, the compound of any one of embodiments Al to A204, or a pharmaceutically acceptable salt thereof, is wherein Degron is the E3 ubiquitin ligase ligand selected from:
Figure imgf000061_0002
where Ree is hydrogen, methyl, ethyl, cyclopropyl, or 2,2,2-trifluoroethyl and Rff is hydrogen, methyl, cyclopropyl, fluoro, cyano, methoxy, difluoromethoxy, trifluoromethoxy, or trifluoromethyl. A206. In embodiment A206, the compound of any one of embodiments Al to A205, or a pharmaceutically acceptable salt thereof, is wherein Degron is the E3 ligase ligand selected from:
Figure imgf000062_0001
A207. In embodiment A207, the compound of any one of embodiments Al to A39b, A67, A69 to A72, A77, A79 to A82, and A83 to A205, or a pharmaceutically acceptable salt thereof, is wherein Degron is the E3 ubiquitin ligase ligand
Figure imgf000062_0002
hydrogen, methyl, ethyl, cyclopropyl, or 2,2,2-trifluoroethyl, preferably methyl and optionally where Rff is hydrogen, methyl, cyclopropyl, fluoro, cyano, methoxy, difluoromethoxy, trifluoromethoxy, or trifluoromethyl.
“Unless stated otherwise” as used in the embodiments means that when an embodiment refers to more than one preceding embodiment of varying scopes, only those groups that fall within the scope of group(s) recited in a preceding embodiment s) should be selected from the embodiment referring thereto. For example, of the R1 groups recited in embodiment A6, while all the R1 recited groups in A6 should be selected for embodiment Al, only R1 = difluoromethyl, trifluoromethyl, 2,2-difluoroethyl, and 2,2,2-trifluoroethyl from the list of groups recited in embodiment A6 should be selected for embodiment A4 as scope of A4 is limited to haloalkyl; and only R1 = hydrogen from the list of groups recited in embodiment A6 should be selected for embodiment A5. Representative compounds of first aspect and Formula (I) are shown in Compound Table 1 below:
Figure imgf000063_0001
Figure imgf000064_0001
Figure imgf000065_0001
General Synthetic Scheme
Compounds Formula (I) (and any embodiment thereof disclosed herein including specific compounds) can be made by the methods depicted in the reaction schemes shown below. The starting materials and reagents used in preparing these compounds are either available from commercial suppliers such as Aldrich Chemical Co., (Milwaukee, Wis.), Bachem (Torrance, Calif.), or Sigma (St. Louis, Mo.) or are prepared by methods known to those skilled in the art following procedures set forth in references such as Fieser and Fieser’s Reagents for Organic Synthesis, Volumes 1-17 (John Wiley and Sons, 1991); Rodd’s Chemistry of Carbon Compounds, Volumes 1-5 and Suppiementals (Elsevier Science Publishers, 1989); Organic Reactions, Volumes 1-40 (John Wiley and Sons, 1991), March’s Advanced Organic Chemistry, (John Wiley and Sons, 4th Edition) and Larock’s Comprehensive Organic Transformations (VCH Publishers Inc., 1989). These schemes are merely illustrative of some methods by which the compounds Formula (I) (and any embodiment thereof disclosed herein including specific compounds) can be synthesized, and various modifications to these schemes can be made and will be suggested to one skilled in the art reading this disclosure. The starting materials and the intermediates, and the final products of the reaction may be isolated and purified if desired using conventional techniques, including but not limited to filtration, distillation, crystallization, chromatography and the like. Such materials may be characterized using conventional means, including physical constants and spectral data.
Unless specified to the contrary, the reactions described herein take place at atmospheric pressure over a temperature range from about -78 °C to about 150 °C, such as from about 0 °C to about 125 °C and further such as at about room (or ambient) temperature, e.g., about 20 °C.
Compounds of Formula (I), where Degron is an E3 ligase ligand of formula (i) and (ii) and Hy, R1, R2, R2a, Ar, alk, and Z are as defined in the Summary (or an embodiment thereof hereinabove), can be prepared as described in Scheme 1.
Scheme 1
Figure imgf000066_0001
Treatment of a compound of formula 1-2 where A1 is a leaving group, such as halogen (e.g. chlorine, or bromine) or methylsulfonyl, with an amine of formula 1-1 where Degron, Hy, R1, R2, R2a, Ar, alk, and Z are as defined in the Summary or an embodiment thereof hereinabove, under suitable conditions such as acidic, basic or transition metal catalyzed reaction conditions well known in the art, provides a compound of Formula (I).
Alternatively, a compound of Formula (I) such as where R1, R2, Ar, and alk are as defined in the Summary or an embodiment thereof, R2a is hydrogen, Hy is 1,4-piperidindiyl, Degron is a group of formula (i) and Z is heterocyclylene, bridged heterocyclylene, or spiro heterocyclylene, each ring containing at least one nitrogen atom, can be synthesized as illustrated and described in Scheme 2.
Scheme 2
Figure imgf000067_0001
Treatment of a compound of formula 2-1 where A1 is a halogen such as chlorine or bromine and R1 and R2 are defined in the Summary (or an embodiment thereof herein above), with a piperidine amine of formula 2-2 under conditions well known in the art, such as in the presence of DIPEA in tert-butanol at elevated temperature, provides a compound of formula 2-3. An amine compound of formula 2-4, prepared by removal of the Boc protecting group of 2-3 in the presence of an acid, such as TFA, is converted to a sulfonamide compound of formula 2-6 by treating it with a sulfonyl halide of formula 2-5 where A2 is halogen such as chlorine and LG is a suitable leaving group such as halo or methylsulfonyl and Ar and alk are as defined in the Summary (or an embodiment thereof hereinabove). Treatment of a compound of formula 2-6 with an amine compound of formula 2-7 where
Figure imgf000067_0002
is heterocyclyl, bridged heterocyclyl, or spiro heterocyclyl, each ring containing at least one nitrogen atom and ring A is defined as in the Summary or an embodiment thereof hereinabove , under basic conditions such as in the presence of DIPEA, provides a compound of Formula (I) where Degron is a group of formula (i).
Proceeding as described in Scheme 2 above, but replacing a compound of formula 2-7 with a compound of formula
Figure imgf000067_0003
ring B are as defined
( Z ki |_| in the Summary and is as defined above for compound 2-7, will provide a compound of Formula (I) where the Degron is a group of formula (ii) or any embodiment thereof.
Compounds of formula 2-1, 2-5, 2-7, and 2-8 are either commercially available or they can be prepared by methods known in the art. Alternatively, a compound of Formula (I) such as where R1, R2, Ar, and alk are as defined in the Summary or an embodiment thereof, R2a is hydrogen, Degron is a group of formula (i) and Z is heterocyclylene containing at least one nitrogen atom such as 4-piperidin-l-yl, can be synthesized as illustrated and described in Scheme 3.
Scheme 3
Figure imgf000068_0001
Cross coupling of a compound of formula 3-1, where A1 is a halogen and ring A as defined in the Summary or an embodiment thereof hereinabove, with a tetrahydropiperidinyl of formula 3- 2 where M is a metal, such as boronic ester or zinc, provides a compound of formula 3-3. The reaction typically proceeds in the presence of a palladium catalyst; for example, when M is a boronic ester, a Suzuki reaction is conducted in the presence of Pd(dppf)C12 and Na2COs, in 1,4- di oxane and water.
Reduction of the double bond in compound 3-3 under conditions well known in the art, such as in the presence of a palladium catalyst and under hydrogen atmosphere, provides compound of formula 3-4. Removal of the Boc protection group of 3-4 under acidic conditions provides an amine compound of formula 3-5. Reaction of 3-5 with an aldehyde of formula 3-6 where Ar and -CH2-[alk1]n-i is alk, each as defined in the Summary or an embodiment thereof hereinabove, under conditions well known in the art in the presence of a reducing agent, such as NaBH(0Ac)3, in a suitable solvent, such as DCM, where Hy is as defined in the Summary or an embodiment thereof hereinabove and -CH2-(alk1)n-i is alk as defined in the Summary or an embodiment thereof hereinabove, provides compound of formula 3-7. Removal of the Boc protecting group in compound 3-7 using an acid like TFA provides an amine compound of formula 3-8. Treatment of compound 3-8 with a compound of formula 2-1 under suitable conditions such as acidic, basic or transition metal catalyzed reaction conditions well known in the art, provides a compound of Formula (I) where Degron is a group of formula (i).
Proceeding as described in Scheme 3 above, but replacing a compound of formula 3-5 with a compound of formula 2-8 above, will provide a compound of formula
Figure imgf000069_0001
which can then be converted into a compound of Formula (I) where the Degron is a group of formula (ii) or any embodiment thereof.
Utility
The compound of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) could cause degradation of CDK4 protein and hence is useful in the treatment of diseases mediated by CDK4.
Increasing evidence suggests that overactivated CDK4 leads to abnormal cell cycle regulation and proliferation in cancer cells. While CDK4 mutations are rarely found, the kinase activity of CDK4/Cyclin D complex is elevated via several mechanisms in human cancers. Aberrations of CDK4/cyclin D regulation have been identified in many human cancers. For example, amplification or overexpression of cyclin DI has been found in many cancers, including breast invasive ductal carcinoma, invasive breast carcinoma, bladder urothelial carcinoma, breast invasive lobular carcinoma, and lung adenocarcinoma. Translocation of cyclin DI Amplification of CDK4 is common in liposarcoma. CDK4 amplification has also been observed at lower frequency in other solid tumors and hematologic malignancies. Loss of the CDK4 inhibitor pl6 (CDKN2A) is also a common event in many cancers, including glioblastoma multiforme, head and neck squamous cell carcinoma, pancreatic adenocarcinoma, esophageal adenocarcinoma, mesothelioma, lung squamous cell carcinoma, bladder urothelial carcinoma, skin cutaneous melanoma, diffuse large B-cell lymphoma, cholangiocarcinoma, lung adenocarcinoma, and stomach adenocarcinoma.
Therefore, a compound of this disclosure may be useful for treating tumors characterized by 1) overexpression of CDK4; 2) amplification /overexpression of cyclin D; 3) hyperphosphorylation of CDK4 (Thrl72); 4) loss-of-function of mutation in FBXW7, depletion of AMBRA1, overexpression of USP28, or amplification/overexpression of CDC25A or/and CDC25B; 6) dysregulation of pl6, p21 or p27 and 6) hyperactive MYC/RAS; 7) Aneuploid cancers, and 8) CDK4 and/or CDK6 inhibitor refractory cancers. In some embodiments, the cancer is ovarian cancer (e.g. serous, clear cell, endometrioid, and mucinous ovarian carcinomas), uterine cancer (e.g. endometrial cancer and uterine sarcoma), stomach cancer (i.e. gastric cancer), lung cancer (e.g., adenocarcinoma, small cell lung cancer and non-small cell lung carcinomas, parvicellular and non-parvicellular carcinoma, bronchial carcinoma, bronchial adenoma, pleuropulmonary blastoma), renal cancer (e.g. clear cell renal cell carcinomas, papillary renal cell carcinomas, and chromophobe renal cell carcinomas), brain cancer (including astrocytoma, meningioma and glioblastoma), neuroblastoma, paraganglioma, pheochromocytoma, pancreatic neuroendocrine tumors, somatostatinomas, hemangioblastomas, gastrointestinal stromal tumors, pituitary tumors, leiomyomas, leiomyosarcomas, polycythaemia, retinal cancers, hereditary leiomyomatosis, renal cell cancer, astrocytoma, skin cancer (e.g. melanoma, squamous cell carcinoma, Kaposi sarcoma, Merkel cell skin cancer), bladder cancer (including bladder urothelial carcinoma), cervical cancer, colorectal cancer (e.g., cancer of the small intestine, colon cancer, rectal cancer, cancer of the anus), head and neck cancer (e.g., cancers of the larynx, hypopharynx, nasopharynx, oropharynx, lips, tongue and mouth), liver cancer (e.g., hepatocellular carcinoma and cholangiocellular carcinoma), prostate cancer, testicular cancer, gall bladder cancer, pancreatic cancer (e.g. exocrine pancreatic carcinoma and neuroendocrine pancreatic cancer), thyroid cancer, and parathyroid cancer, fallopian tube cancer, peritoneal cancer, vaginal cancer, biliary tract cancer, esophageal cancer (e.g. esophageal squamous cell carcinoma and esophageal adenocarcinoma), sarcoma (e.g. liposarcoma and osteosarcoma), bone cancer, chondrosarcoma, leukemia (including acute myeloid leukemia, acute lymphocytic leukemia, chronic myelogenous leukemia, and chronic lymphocytic leukemia), lymphoma (e.g. non-Hodgkin lymphoma NHL including mantel cell lymphoma, MCL and Hodgkin lymphoma) and multiple myeloma.
In other embodiments, the cancer is breast cancer, including, e.g., ER-positive/HR- positive, HER2 -negative breast cancer; ER-positive/HR-positive, HER2-positive breast cancer; ER-negative/HR-negative, HER2-positive breast cancer, triple negative breast cancer (TNBC); or inflammatory breast cancer. In some embodiments, the breast cancer is endocrine resistant breast cancer, anti-HER2 therapy (e.g. trastuzumab) resistant breast cancer, or breast cancer demonstrating primary or acquired resistance to CDK4/CDK6 inhibition. In some embodiments, the breast cancer is advanced or metastatic breast cancer. In some embodiments of each of the foregoing, the breast cancer is characterized by amplification or overexpression of CCNDl and/or CDK4.
Besides cancer, compounds of Formula (I) as described in the Summary as described in the first aspect (or any of the embodiments thereof herein above) are useful in treating autoimmune diseases autoimmune diseases e.g., rheumatoid arthritis (RA), systemic lupus erythematosus (SLE), primary Sjogren’s syndrome (pSS), multiple sclerosis (MS), Crohn’s disease (CD), gout, uveitis, pemphigus vulgaris, and sepsis, and can also be used as a promising preventive treatment for noise-, cisplatin-, or antibiotic-induced or age-related hearing loss.
Testing
CDK4 degradation activities of the compounds of the present disclosure can be tested using the in vitro assays described in Biological Examples below.
Pharmaceutical Compositions
In general, the compounds Formula (I) (unless stated otherwise, reference to compound/compounds of Formula (I) wherein includes any embodiments thereof described herein and/or a pharmaceutically acceptable salt thereof) will be administered in a therapeutically effective amount by any of the accepted modes of administration for agents that serve similar utilities. Therapeutically effective amounts of compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may range from about 0.01 to about 500 mg per kg patient body weight per day, which can be administered in single or multiple doses. A suitable dosage level may be from about 0.1 to about 250 mg/kg per day; about 0.5 to about 100 mg/kg per day. A suitable dosage level may be about 0.01 to about 250 mg/kg per day, about 0.05 to about 100 mg/kg per day, or about 0.1 to about 50 mg/kg per day. Within this range the dosage can be about 0.05 to about 0.5, about 0.5 to about 5 or about 5 to about 50 mg/kg per day. For oral administration, the compositions can be provided in the form of tablets containing about 1.0 to about 1000 milligrams of the active ingredient, particularly about 1, 5, 10, 15, 20, 25, 50, 75, 100, 150, 200, 250, 300, 400, 500, 600, 750, 800, 900, and 1000 milligrams of the active ingredient. The actual amount of the compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds), i.e., the active ingredient, will depend upon numerous factors such as the severity of the disease to be treated, the age and relative health of the patient, the potency of the compound being utilized, the route and form of administration, and other factors.
In general, compounds Formula (I) (and any embodiment thereof disclosed herein including specific compounds) will be administered as pharmaceutical compositions by any one of the following routes: oral, systemic (e.g., transdermal, intranasal or by suppository), or parenteral (e.g., intramuscular, intravenous or subcutaneous) administration. The preferred manner of administration is oral using a convenient daily dosage regimen, which can be adjusted according to the degree of affliction. Compositions can take the form of tablets, pills, capsules, semisolids, powders, sustained release formulations, solutions, suspensions, elixirs, aerosols, or any other appropriate compositions.
The choice of formulation depends on various factors such as the mode of drug administration (e.g., for oral administration, formulations in the form of tablets, pills or capsules, including enteric coated or delayed release tablets, pills or capsules are preferred) and the bioavailability of the drug substance.
The compositions are comprised of in general, a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) in combination with at least one pharmaceutically acceptable excipient. Acceptable excipients are generally non-toxic, aid administration, and do not adversely affect the therapeutic benefit of the compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds). Such excipient may be any solid, liquid, semi-solid or, in the case of an aerosol composition, gaseous excipient that is generally available to one of skill in the art.
Solid pharmaceutical excipients include starch, cellulose, talc, glucose, lactose, sucrose, gelatin, malt, rice, flour, chalk, silica gel, magnesium stearate, sodium stearate, glycerol monostearate, sodium chloride, dried skim milk and the like. Liquid and semisolid excipients may be selected from glycerol, propylene glycol, water, ethanol and various oils, including those of petroleum, animal, vegetable or synthetic origin, e.g., peanut oil, soybean oil, mineral oil, sesame oil, etc. Preferred liquid carriers, particularly for injectable solutions, include water, saline, aqueous dextrose, and glycols.
The compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may be formulated for parenteral administration by injection, e.g., by bolus injection or continuous infusion. Formulations for injection may be presented in unit dosage form, e.g., in ampoules or in multi -dose containers, with an added preservative. The compositions may take such forms as suspensions, solutions or emulsions in oily or aqueous vehicles, and may contain formulatory agents such as suspending, stabilizing and/or dispersing agents. The formulations may be presented in unit-dose or multi-dose containers, for example sealed ampoules and vials, and may be stored in powder form or in a freeze-dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example, saline or sterile pyrogen-free water, immediately prior to use. Extemporaneous injection solutions and suspensions may be prepared from sterile powders, granules and tablets of the kind previously described.
Formulations for parenteral administration include aqueous and non-aqueous (oily) sterile injection solutions of the active compounds which may contain antioxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non-aqueous sterile suspensions which may include suspending agents and thickening agents. Suitable lipophilic solvents or vehicles include fatty oils such as sesame oil, or synthetic fatty acid esters, such as ethyl oleate or triglycerides, or liposomes. Aqueous injection suspensions may contain substances which increase the viscosity of the suspension, such as sodium carboxymethyl cellulose, sorbitol, or dextran. Optionally, the suspension may also contain suitable stabilizers or agents which increase the solubility of the compounds to allow for the preparation of highly concentrated solutions.
In addition to the formulations described previously, the compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may also be formulated as a depot preparation. Such long -acting formulations may be administered by implantation (for example subcutaneously or intramuscularly) or by intramuscular injection. Thus, for example, the compounds may be formulated with suitable polymeric or hydrophobic materials (for example as an emulsion in an acceptable oil) or ion exchange resins, or as sparingly soluble derivatives, for example, as a sparingly soluble salt.
For buccal or sublingual administration, the compositions may take the form of tablets, lozenges, pastilles, or gels formulated in conventional manner. Such compositions may comprise the active ingredient in a flavored basis such as sucrose and acacia or tragacanth.
The compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may also be formulated in rectal compositions such as suppositories or retention enemas, e.g., containing conventional suppository bases such as cocoa butter, polyethylene glycol, or other glycerides.
Certain compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may be administered topically, that is by non-systemic administration. This includes the application of a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) externally to the epidermis or the buccal cavity and the instillation of such a compound into the ear, eye and nose, such that the compound does not significantly enter the blood stream. In contrast, systemic administration refers to oral, intravenous, intraperitoneal and intramuscular administration.
Formulations suitable for topical administration include liquid or semi-liquid preparations suitable for penetration through the skin to the site of inflammation such as gels, liniments, lotions, creams, ointments or pastes, and drops suitable for administration to the eye, ear or nose. The active ingredient for topical administration may comprise, for example, from 0.001% to 10% w/w (by weight) of the formulation. In certain embodiments, the active ingredient may comprise as much as 10% w/w. In other embodiments, it may comprise less than 5% w/w. In certain embodiments, the active ingredient may comprise from 2% w/w to 5% w/w. In other embodiments, it may comprise from 0.1% to 1% w/w of the formulation.
For administration by inhalation, compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may be conveniently delivered from an insufflator, nebulizer pressurized packs or other convenient means of delivering an aerosol spray. Pressurized packs may comprise a suitable propellant such as dichlorodifluoromethane, trichlorofluoromethane, di chlorotetrafluoroethane, carbon dioxide or other suitable gas. In the case of a pressurized aerosol, the dosage unit may be determined by providing a valve to deliver a metered amount. Alternatively, for administration by inhalation or insufflation, the compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may take the form of a dry powder composition, for example a powder mix of the compound and a suitable powder base such as lactose or starch. The powder composition may be presented in unit dosage form, in for example, capsules, cartridges, gelatin or blister packs from which the powder may be administered with the aid of an inhalator or insufflator. Other suitable pharmaceutical excipients and their formulations are described in Remington’s Pharmaceutical Sciences, edited by E. W. Martin (Mack Publishing Company, 20th ed., 2000).
The level of the compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) in a formulation can vary within the full range employed by those skilled in the art. Typically, the formulation will contain, on a weight percent (wt. %) basis, from about 0.01-99.99 wt. % of a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) based on the total formulation, with the balance being one or more suitable pharmaceutical excipients. For example, the compound is present at a level of about 1-80 wt. %.
Combinations and Combination Therapies
The compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) may be used in combination with one or more other drugs in the treatment of diseases or conditions for which compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) or the other drugs may have utility. Such other drug(s) may be administered, by a route and in an amount commonly used therefore, contemporaneously or sequentially with a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds). When a compound of Formula (I)(or any embodiment thereof disclosed herein including specific compounds) is used contemporaneously with one or more other drugs, a pharmaceutical composition in unit dosage form containing such other drugs and the compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) is preferred. However, the combination therapy may also include therapies in which the compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) and one or more other drugs are administered on different overlapping schedules. It is also contemplated that when used in combination with one or more other active ingredients, the compounds of Formula (I)(and any embodiment thereof disclosed herein including specific compounds) and the other active ingredients may be used in lower doses than when each is used singly.
Accordingly, the pharmaceutical compositions of the present disclosure also include those that contain one or more other drugs, in addition to a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds).
The above combinations include combinations of a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) not only with one other drug, but also with two or more other active drugs. Likewise, a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) may be used in combination with other drugs that are used in the prevention, treatment, control, amelioration, or reduction of risk of the diseases or conditions for which a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) is useful. Such other drugs may be administered, by a route and in an amount commonly used therefore, contemporaneously or sequentially with a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds). When a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) is used contemporaneously with one or more other drugs, a pharmaceutical composition containing such other drugs in addition to the compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) can be used. Accordingly, the pharmaceutical compositions of the present disclosure also include those that also contain one or more other active ingredients, in addition to a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds). The weight ratio of the compound of this disclosure to the second active ingredient may be varied and will depend upon the effective dose of each ingredient. Generally, an effective dose of each will be used.
Where the subject in need is suffering from or at risk of suffering from cancer, the subject can be treated with a compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) in any combination with one or more other anti -cancer agents including but not limited to: MAP kinase pathway (RAS/RAF/MEK/ERK) inhibitors including but not limited to: Vemurafanib (PLX4032), Dabrafenib, Encorafenib (LGX818), TQ-B3233, XL- 518 (Cas No. 1029872-29-4, available from ACC Corp); trametinib, selumetinib (AZD6244), TQ- B3234, PD184352, PD325901, TAK-733, pimasertinib, binimetinib, refametinib, cobimetinib (GDC-0973), AZD8330, BVD-523, LTT462, Ulixertinib, AMG510, ARS853, and any RAS inhibitors disclosed in patents WO2016049565, WO2016164675, WO2016168540, WO2017015562, WO2017058728, WO2017058768, WO2017058792, W02017058805,W02017058807, W02017058902, WO2017058915, W02017070256, WO20 17087528, WO2017100546, WO2017172979, W02017201161, WO2018064510, W02018068017, WO2018119183;
CSF1R inhibitors (PLX3397, LY3022855, etc.) and CSF1R antibodies (IMC-054, RG7155) TGF beta receptor kinase inhibitor such as LY2157299;
BTK inhibitor such as ibrutinib; BCR-ABL inhibitors: Imatinib (Gleevec®); Inilotinib hydrochloride; Nilotinib (Tasigna®); Dasatinib (BMS-345825); Bosutinib (SKI-606); Ponatinib (AP24534); Bafetinib (INNO406); Danusertib (PHA-739358), AT9283 (CAS 1133385-83-7); Saracatinib (AZD0530); and N-[2-[(lS,4R)-6-[[4-cyclobutylarmno)-5-(trifluoromethyl)-2- pyrimidinyl]amino]-l, 2,3,4-tetrahydronaphthalen-l,4-imin-9-yl]-2-oxoethyl]-acetamide (PF- 03814735, CAS 942487-16-3);
ALK inhibitors: PF-2341066 (XALKOPJ ®; crizotinib); 5-chloro-N4-(2- (isopropyl- sulfonyl)phenyl)-N2-(2-methoxy-4-(4-(4-methylpiper azin-l-yl)piperi din-1- yl)phenyl)pyrimidine- 2,4-diamine; GSK1838705 A; CH5424802; Ceritinib (ZYKADIA); TQ-B3139, TQ-B3101 PI3K inhibitors: 4-[2-(lH-indazol-4-yl)-6-[[4-(methylsulfonyl)piperazin-l- yl]methyl]thieno[3,2-d]- pyrimidin-4-yl]morholine (also known as GDC 0941 and described in PCT Publication Nos. WO 09/036082 and WO 09/055730), 2-methyl-2-[4-[3-methyl-2-oxo-8- (quinolin-3-yl)-2,3-dihydro- imidazo[4,5-c]quinolin-l-yl]phenyl]propionitrile (also known as BEZ 235 or NVP-BEZ 235, and described in PCT Publication No. WO 06/122806);
Vascular Endothelial Growth Factor (VEGF) receptor inhibitors: Bevacizumab (sold under the trademark Avastin® by Genentech/Roche), axitinib, (N-methyl-2-[[3-[(E)-2-pyridin-2- ylethenyl]-lH-indazol-6-yl]sulfanyl]benzamide, also known as AG013736, and described in PCT Publication No. WO 01/002369), Brivanib Alaninate ((S)-((R)-l-(4-(4-fluoro-2-methyl-lH-indol- 5-yloxy)-5-methylpyrrolo[2,l-f][l,2,4]triazin-6-yloxy)propan-2-yl)2-aminopropanoate, also known as BMS-582664), motesanib (N-(2,3-dihydro-3,3-dimethyl-lH-indol-6-yl)-2-[(4- pyridinyl- methyl)amino]-3-pyridinecarboxamide, and described in PCT Publication No. WO 02/066470), pasireotide (also known as SOM230, and described in PCT Publication No. WO 02/010192), sorafenib (sold under the tradename Nexavar®); AL-2846 MET inhibitor such as foretinib, carbozantinib, or crizotinib; FLT3 inhibitors - sunitinib malate (sold under the tradename Sutent® by Pfizer); PKC412 (midostaurin); tanutinib, sorafenib, lestaurtinib, KW-2449, quizartinib (AC220) and crenolanib;
Epidermal growth factor receptor (EGFR) inhibitors: Gefitnib (sold under the tradename Iressa®), N-[4-[(3-chloro-4-fluorophenyl)amino]-7-[[(3"S")-tetrahydro-3-furanyl]oxy]-6- quinazolinyl]-4(dimethylamino)-2-butenamide, sold under the tradename Tovok® by Boehringer Ingelheim), cetuximab (sold under the tradename Erbitux® by Bristol-Myers Squibb), panitumumab (sold under the tradename Vectibix® by Amgen);
HER2 receptor inhibitors: Trastuzumab (sold under the trademark Herceptin® by Genentech/Roche), neratinib (also known as HKI-272, (2E)-N-[4-[[3-chloro-4-[(pyridin-2- yl)methoxy]phenyl]amino]-3-cyano-7-ethoxyquinolin-6-yl]-4-(dimethylamino)but-2-enamide, and described PCT Publication No. WO 05/028443), lapatinib or lapatinib ditosylate (sold under the trademark Tykerb® by GlaxoSmithKline); Trastuzumab emtansine (in the United States, ado- trastuzumab emtansine, trade name Kadcyla) - an antibody-drug conjugate consisting of the monoclonal antibody trastuzumab (Herceptin) linked to the cytotoxic agent mertansine (DM1); Trastuzumab deruxtecan (trade name Enhertu);
HER dimerization inhibitors: Pertuzumab (sold under the trademark Omnitarg®, by Genentech);
CD20 antibodies: Rituximab (sold under the trademarks Riuxan® and Mab Thera® by Genentech/Roche), tositumomab (sold under the trademarks Bexxar® by GlaxoSmithKline), ofatumumab (sold under the trademark Arzerra® by GlaxoSmithKline);
Tyrosine kinase inhibitors: Erlotinib hydrochloride (sold under the trademark Tarceva® by Genentech/Roche), Linifanib (N-[4-(3-amino-lH-indazol-4-yl)phenyl]-N'-(2-fluoro-5- methylphenyl)urea, also known as ABT 869, available from Genentech), sunitinib malate (sold under the tradename Sutent® by Pfizer), bosutinib (4-[(2,4-dichloro-5-methoxyphenyl)amino]-6- methoxy-7-[3-(4-methylpiperazin-l-yl)propoxy]quinoline-3-carbonitrile, also known as SKI-606, and described in US Patent No. 6,780,996), dasatinib (sold under the tradename Sprycel® by Bristol-Myers Squibb), armala (also known as pazopanib, sold under the tradename Votrient® by GlaxoSmithKline), imatinib and imatinib mesylate (sold under the tradenames Gilvec® and Gleevec® by Novartis);
DNA Synthesis inhibitors: Capecitabine (sold under the trademark Xeloda® by Roche), gemcitabine hydrochloride (sold under the trademark Gemzar® by Eli Lilly and Company), nelarabine ((2R3S,4R,5R)-2-(2-amino-6-methoxy-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol, sold under the tradenames Arranon® and Atriance® by GlaxoSmithKline); Antineoplastic agents: oxaliplatin (sold under the tradename Eloxatin® ay Sanofi -Aventis and described in US Patent No. 4,169,846);
Human Granulocyte colony-stimulating factor (G-CSF) modulators: Filgrastim (sold under the tradename Neupogen® by Amgen);
Immunomodulators: Afutuzumab (available from Roche®), pegfilgrastim (sold under the tradename Neulasta® by Amgen), lenalidomide (also known as CC-5013, sold under the tradename Revlimid®), thalidomide (sold under the tradename Thalomid®);
CD40 inhibitors: Dacetuzumab (also known as SGN-40 or huS2C6, available from Seattle Genetics, Inc); Pro-apoptotic receptor agonists (PARAs): Dulanermin (also known as AMG-951, available from Amgen/Genentech);
Hedgehog antagonists: 2-chloro-N-[4-chloro-3-(2-pyridinyl)phenyl]-4-(methylsulfonyl)- benzamide (also known as GDC-0449, and described in PCT Publication No. WO 06/028958);
Phospholipase A2 inhibitors: Anagrelide (sold under the tradename Agrylin®);
BCL-2 inhibitors: 4-[4-[[2-(4-chlorophenyl)-5,5-dimethyl-l-cyclohexen-l-yl]methyl]-l- piperazinyl]-N-[[4-[[(lR)-3-(4-morpholinyl)-l-[(phenylthio)m ethyl]propyl]amino]-3- [(trifluoromethyl)sulfonyl]phenyl]sulfonyl]benzamide (also known as ABT-263 and described in PCT Publication No. WO 09/155386);
MC1-1 inhibitors: MIK665, S64315, AMG 397, and AZD5991;
Aromatase inhibitors: Exemestane (sold under the trademark Aromasin® by Pfizer), letrozole (sold under the tradename Femara® by Novartis), anastrozole (sold under the tradename Arimidex®);
Topoisomerase I inhibitors: Irinotecan (sold under the trademark Camptosar® by Pfizer), topotecan hydrochloride (sold under the tradename Hycamtin® by GlaxoSmithKline);
Topoisomerase II inhibitors: etoposide (also known as VP-16 and Etoposide phosphate, sold under the tradenames Toposar®, VePesid® and Etopophos®), teniposide (also known as VM-26, sold under the tradename Vumon®); mTOR inhibitors: Temsirolimus (sold under the tradename Torisel® by Pfizer), ridaforolimus (formally known as deferolimus, (lR,2R,4S)-4-[(2R)-2[(lR,9S,12S,15R,16E, 18R,19R,21R, 23S,24E,26E,28Z,30S,32S,35R)-l,18-dihydroxy-19,30- dimethoxy-15, 17, 21, 23, 29, 35-hexamethyl-2,3, 10, 14,20-pentaoxo-l 1, 36-dioxa-4- azatri cyclo[30.3.1.0 4 ' 9] hexatriaconta-16,24,26,28-tetraen-12-yl]propyl]-2-methoxycyclohexyl dimethylphosphinate, also known as AP23573 and MK8669, and described in PCT Publication No. WO 03/064383), everolimus (sold under the tradename Afinitor® by Novartis);
Proteasome inhibitor such as carfilzomib, MLN9708, delanzomib, or bortezomib; BET inhibitors such as INCB054329, OTX015, and CPI-0610;
LSD1 inhibitors such as GSK2979552, and INCB059872;
HIF-2a inhibitors such as PT2977 and PT2385;
Osteoclastic bone resorption inhibitors: l-Hydroxy-2-imidazol-l-yl-phosphonoethyl) phosphonic acid monohydrate (sold under the tradename Zometa® by Novartis); CD33 Antibody Drug Conjugates: Gemtuzumab ozogamicin (sold under the tradename Mylotarg® by Pfizer/Wyeth);
CD22 Antibody Drug Conjugates: Inotuzumab ozogamicin (also referred to as CMC-544 and WAY-207294, available from Hangzhou Sage Chemical Co., Ltd.);
CD20 Antibody Drug Conjugates: Ibritumomab tiuxetan (sold under the tradename Zevalin®);
Somatostain analogs: octreotide (also known as octreotide acetate, sold under the tradenames Sandostatin® and Sandostatin LAR®);
Synthetic Interleukin- 11 (IL-11): oprelvekin (sold under the tradename Neumega® by Pfizer/Wyeth);
Synthetic erythropoietin: Darbepoetin alfa (sold under the tradename Aranesp® by Amgen);
Receptor Activator for Nuclear Factor K B (RANK) inhibitors: Denosumab (sold under the tradename Prolia® by Amgen);
Thrombopoietin mimetic peptibodies: Romiplostim (sold under the tradename Nplate® by Amgen);
Cell growth stimulators: Palifermin (sold under the tradename Kepivance® by Amgen);
Anti-Insulin-like Growth Factor-1 receptor (IGF-1R) antibodies: Figitumumab (also known as CP-751,871, available from ACC Corp), robatumumab (CAS No. 934235-44-6);
Anti-CSl antibodies: Elotuzumab (HuLuc63, CAS No. 915296-00-3);
CD52 antibodies: Alemtuzumab (sold under the tradename Campath®);
Histone deacetylase inhibitors (HDI): Voninostat (sold under the tradename Zolinza® by Merck);
Alkylating agents: Temozolomide (sold under the tradenames Temodar® and Temodal® by Schering-Plough/Merck), dactinomycin (also known as actinomycin-D and sold under the tradename Cosmegen®), melphalan (also known as L-PAM, L-sarcolysin, and phenylalanine mustard, sold under the tradename Alkeran®), altretamine (also known as hexamethylmelamine (HMM), sold under the tradename Hexal en®), carmustine (sold under the tradename BiCNU®), bendamustine (sold under the tradename Treanda®), busulfan (sold under the tradenames Busulfex® and Myleran®), carboplatin (sold under the tradename Paraplatin®), lomustine (also known as CCNU, sold under the tradename CeeNU®), cisplatin (also known as CDDP, sold under the tradenames Platinol® and Platinol®-AQ), chlorambucil (sold under the tradename Leukeran®), cyclophosphamide (sold under the tradenames Cytoxan® and Neosar®), dacarbazine (also known as DTIC, DIC and imidazole carboxamide, sold under the tradename DTIC-Dome®), altretamine (also known as hexamethylmelamine (HMM) sold under the tradename Hexal en®), ifosfamide (sold under the tradename Ifex®), procarbazine (sold under the tradename Matulane®), mechlorethamine (also known as nitrogen mustard, mustine and mechloroethamine hydrochloride, sold under the tradename Mustargen®), streptozocin (sold under the tradename Zanosar®), thiotepa (also known as thiophosphoamide, TESPA and TSP A, sold under the tradename Thioplex®; Biologic response modifiers: bacillus calmette-guerin (sold under the tradenames theraCys® and TICE® BCG), denileukin diftitox (sold under the tradename Ontak®);
Anti-tumor antibiotics: doxorubicin (sold under the tradenames Adriamycin® and Rubex®), bleomycin (sold under the tradename lenoxane®), daunorubicin (also known as dauorubicin hydrochloride, daunomycin, and rubidomycin hydrochloride, sold under the tradename Cerubidine®), daunorubicin liposomal (daunorubicin citrate liposome, sold under the tradename DaunoXome®), mitoxantrone (also known as DHAD, sold under the tradename Novantrone®), epirubicin (sold under the tradename Ellence™), idarubicin (sold under the tradenames Idamycin®, Idamycin PFS®), mitomycin C (sold under the tradename Mutamycin®);
Anti -microtubule agents: Estramustine (sold under the tradename Emcyl®);
Cathepsin K inhibitors: Odanacatib (also known as MK-0822, N-(l-cyanocyclopropyl)-4- fluoro-N-2-{(lS)-2,2,2-trifluoro-l-[4'-(methylsulfonyl)biphenyl-4-yl]ethyl}-L-leucinamide, available from Lanzhou Chon Chemicals, ACC Corp., and ChemieTek, and described in PCT Publication no. WO 03/075836); Epothilone B analogs: Ixabepilone (sold under the tradename Lxempra® by Bristol-Myers Squibb);
Heat Shock Protein (HSP) inhibitors: Tanespimycin (17-allylamino-17- demethoxy- geldanamycin, also known as KOS-953 and 17-AAG, available from SIGMA, and described in US Patent No. 4,261,989), NVP-HSP990, AUY922, AT13387, STA-9090, Debio 0932, KW-2478, XL888, CNF2024, TAS-116
TpoR agonists: Eltrombopag (sold under the tradenames Promacta® and Revolade® by GlaxoSmithKline);
Anti-mitotic agents: Docetaxel (sold under the tradename Taxotere® by Sanofi -Aventis); Adrenal steroid inhibitors: aminoglutethimide (sold under the tradename Cytadren®); Anti-androgens: Nilutamide (sold under the tradenames Nilandron® and Anandron®), bicalutamide (sold under tradename Casodex®), flutamide (sold under the tradename Fulexin™);
Androgens: Fluoxymesterone (sold under the tradename Halotestin®);
CDK (CDK1, CDK2, CDK3, CDK5, CDK7, CDK8, CDK9, CDK11/12, or CDK16) inhibitors including but not limited to Alvocidib (pan-CDK inhibitor, also known as flovopirdol or HMR-1275, 2-(2-chlorophenyl)-5,7-dihydroxy-8-[(3S,4R)-3-hydroxy-l-methyl-4-piperidinyl]-4- chromenone, and described in US Patent No. 5,621,002);
CDK4/6 inhibitors pabociclib, ribociclib, abemaciclib, and Trilaciclib; CDK9 inhibitors AZD 4573, P276-00, AT7519M, TP-1287; CDK2/4/6 inhibitor such as PF-06873600;
SHP-2 inhibitor such as TNO155;
MDM2/MDMX, MDM2/p53 and/or MDMX/p53 modulators;
Gonadotropin-releasing hormone (GnRH) receptor agonists: Leuprolide or leuprolide acetate (sold under the tradenames Viadure® by Bayer AG, Eligard® by Sanofi -Aventis and Lupron® by Abbott Lab);
Taxane anti -neoplastic agents: Cabazitaxel (l-hydroxy-7, 10 -dimethoxy-9-oxo-5,20- epoxytax-1 l-ene-2a,4,13a-triyl-4-acetate-2-benzoate-13-[(2R,3S)-3-{ [(tert- butoxy)carbonyl]amino}-2-hydroxy-3-phenylpropanoate), larotaxel ((2a,3^,4a,5p,7a,10p,13a)- 4, 10-bis(acetyloxy)-13-({(2R,3 S)-3-[(tert-butoxy carbonyl) amino] -2-hydroxy-3- phenylpropanoyl}oxy)-l-hydroxy-9-oxo-5,20-epoxy-7, 19-cyclotax-l l-en-2-yl benzoate);
5HTla receptor agonists: Xaliproden (also known as SR57746, l-[2-(2-naphthyl)ethyl]-4- [3-(trifluoromethyl)phenyl]-l,2,3,6-tetrahydropyridine, and described in US Patent No. 5,266,573); HPC vaccines: Cervarix® sold by GlaxoSmithKline, Gardasil® sold by Merck; Iron Chelating agents: Deferasinox (sold under the tradename Exjade® by Novartis);
Anti-metabolites: Claribine (2-chlorodeoxyadenosine, sold under the tradename leustatin®), 5 -fluorouracil (sold under the tradename Adrucil®), 6-thioguanine (sold under the tradename Purinethol®), pemetrexed (sold under the tradename Alimta®), cytarabine (also known as arabinosylcytosine (Ara-C), sold under the tradename Cytosar-U®), cytarabine liposomal (also known as Liposomal Ara-C, sold under the tradename DepoCyt™), decitabine (sold under the tradename Dacogen®), hydroxyurea (sold under the tradenames Hydrea®, Droxia™ and Mylocel™), fludarabine (sold under the tradename Fludara®), floxuridine (sold under the tradename FUDR®), cladribine (also known as 2-chlorodeoxyadenosine (2-CdA) sold under the tradename Leustatin™), methotrexate (also known as amethopterin, methotrexate sodium (MTX), sold under the tradenames Rheumatrex® and Trexall™), pentostatin (sold under the tradename Nipent®); Bisphosphonates: Pamidronate (sold under the tradename Aredia®), zoledronic acid (sold under the tradename Zometa®); Demethylating agents: 5-azacitidine (sold under the tradename Vidaza®), decitabine (sold under the tradename Dacogen®);
Plant Alkaloids: Paclitaxel protein-bound (sold under the tradename Abraxane®), vinblastine (also known as vinblastine sulfate, vincaleukoblastine and VLB, sold under the tradenames Alkaban-AQ® and Velban®), vincristine (also known as vincristine sulfate, LCR, and VCR, sold under the tradenames Oncovin® and Vincasar Pfs®), vinorelbine (sold under the tradename Navelbine®), paclitaxel (sold under the tradenames Taxol and Onxal™);
Retinoids: Ali tretinoin (sold under the tradename Panretin®), tretinoin (all -trans retinoic acid, also known as ATRA, sold under the tradename Vesanoid®), Isotretinoin (13-cis-retinoic acid, sold under the tradenames Accutane®, Amnesteem®, Claravis®, Clarus®, Decutan®, Isotane®, Izotech®, Oratane®, Isotret®, and Sotret®), bexarotene (sold under the tradename Targretin®);
Glucocorticosteroids: Hydrocortisone (also known as cortisone, hydrocortisone sodium succinate, hydrocortisone sodium phosphate, and sold under the tradenames Ala-Cort®, Hydrocortisone Phosphate, Solu-Cortef®, Hydrocort Acetate® and Lanacort®), dexamethazone ((8S,9R,10S,l lS,13S,14S,16R,17R)-9-fhroro-l l,17-dihydroxy-17-(2-hydroxyacetyl)-10,13,16- trimethyl-6,7,8,9,10,1 l,12,13,14,15,16,17-dodecahydro-3H-cyclopenta[a]phenanthren-3-one), prednisolone (sold under the tradenames Delta-Cortel®, Orapred®, Pediapred® and Prelone®), prednisone (sold under the tradenames Deltasone®, Liquid Red®, Meticorten® and Orasone®), methylprednisolone (also known as 6-Methylprednisolone, Methylprednisolone Acetate, Methylprednisolone Sodium Succinate, sold under the tradenames Duralone®, Medralone®, Medrol®, M-Prednisol® and Solu-Medrol®);
Cytokines: interleukin-2 (also known as aldesleukin and IL-2, sold under the tradename Proleukin®), interleukin- 11 (also known as oprevelkin, sold under the tradename Neumega®), alpha interferon alfa (also known as IFN-alpha, sold under the tradenames Intron® A, and Roferon-A®); [00209] Estrogen receptor downregulators: Fulvestrant (sold under the tradename Faslodex®);
Anti-estrogens: tamoxifen (sold under the tradename Novaldex®); Toremifene (sold under the tradename Fareston®);
Selective estrogen receptor modulators (SERMs): Raloxifene (sold under the tradename Evista®); Leutinizing hormone releasing hormone (LHRH) agonists: Goserelin (sold under the tradename Zoladex®); Progesterones: megestrol (also known as megestrol acetate, sold under the tradename Megace®);
Miscellaneous cytotoxic agents: Arsenic trioxide (sold under the tradename Trisenox®), asparaginase (also known as L-asparaginase, Erwinia L-asparaginase, sold under the tradenames Elspar® and Kidrolase®);
One or more immune checkpoint inhibitors CD27, CD28, CD40, CD 122, CD96, CD73, CD39, CD47, 0X40, GITR, CSF1R, JAK, PI3K delta, PI3K gamma, TAM kinase, arginase, CD137 (also known as 4-1BB), ICOS, A2AR, A2BR, HIF-2a, B7-H3, B7-H4, BTLA, CTLA-4, LAG3, TIM3, VISTA, CD96, TIGIT, PD-1, PD-L1 and PD-L2. In some embodiments, the immune checkpoint molecule is a stimulatory checkpoint molecule selected from CD27, CD28, CD40, ICOS, 0X40, GITR, CD137 and STING. In some embodiments, the immune checkpoint molecule is an inhibitory checkpoint molecule selected from B7-H3, B7-H4, BTLA, CTLA-4, IDO, TDO, Arginase, KIR, LAG3, PD-1, TIM3, CD96, TIGIT and VISTA. In some embodiments, the compounds provided herein can be used in combination with one or more agents selected from KIR inhibitors, TIGIT inhibitors, LAIR1 inhibitors, CD 160 inhibitors, 2B4 inhibitors and TGFR beta inhibitors.
In some embodiments, the inhibitor of an immune checkpoint molecule is an inhibitor of PD-1, e.g., an anti-PD-1 monoclonal antibody. In some embodiments, the anti-PD-1 monoclonal antibody is nivolumab, pembrolizumab (also known as MK-3475), pidilizumab, SHR-1210, PDR001, or AMP-224. In some embodiments, the anti-PD-1 monoclonal antibody is nivolumab, or pembrolizumab or PDR001. In some embodiments, the anti-PDl antibody is pembrolizumab.
In some embodiments, the inhibitor of an immune checkpoint molecule is an inhibitor of PD-L1, e.g., an anti-PD-Ll monoclonal antibody. In some embodiments, the anti-PD-Ll monoclonal antibody is BMS-935559, MEDI4736, MPDL3280A (also known as RG7446), or MSB0010718C. In some embodiments, the anti-PD-Ll monoclonal antibody is MPDL3280A (atezolizumab) or MEDI4736 (durvalumab).
In some embodiments, the inhibitor of an immune checkpoint molecule is an inhibitor of CTLA-4, e.g., an anti-CTLA-4 antibody. In some embodiments, the anti -CTLA-4 antibody is ipilimumab or tremelimumab. In some embodiments, the inhibitor of an immune checkpoint molecule is an inhibitor of LAG3, e.g., an anti-LAG3 antibody. In some embodiments, the anti- LAG3 antibody is BMS-986016 or LAG525. In some embodiments, the inhibitor of an immune checkpoint molecule is an inhibitor of GITR, e.g., an anti-GITR antibody. In some embodiments, the anti-GITR antibody is TRX518 or, MK-4166, INCAGN01876 or MK-1248. In some embodiments, the inhibitor of an immune checkpoint molecule is an inhibitor of 0X40, e.g., an anti-OX40 antibody or OX40L fusion protein. In some embodiments, the anti-OX40 antibody is MEDI0562 or, INCAGNO 1949, GSK2831781, GSK-3174998, MOXR-0916, PF-04518600 or LAG525. In some embodiments, the OX40L fusion protein is MED 16383
Compounds of Formula (I) (and any embodiment thereof disclosed herein including specific compounds) can also be used to increase or enhance an immune response, including increasing the immune response to an antigen; to improve immunization, including increasing vaccine efficacy; and to increase inflammation. In some embodiments, the compounds of the invention can be sued to enhance the immune response to vaccines including, but not limited, Listeria vaccines, oncolytic viral vaccines, and cancer vaccines such as GV AX® (granulocytemacrophage colony-stimulating factor (GM-CF) gene-transfected tumor cell vaccine). Anti-cancer vaccines include dendritic cells, synthetic peptides, DNA vaccines and recombinant viruses. Other immune-modulatory agents also include those that block immune cell migration such as antagonists to chemokine receptors, including CCR2 and CCR4; Sting agonists and Toll receptor agonists.
Other anti-cancer agents also include those that augment the immune system such as adjuvants or adoptive T cell transfer. Compounds of this application may be effective in combination with CAR (Chimeric antigen receptor) T cell treatment as a booster for T cell activation.
A compound of Formula (I) (or any embodiment thereof disclosed herein including specific compounds) can also be used in combination with the following adjunct therapies: antinausea drugs: NK-1 receptor antagonists: Casopitant (sold under the tradenames Rezonic® and Zunrisa® by GlaxoSmithKline); and
Cytoprotective agents: Amifostine (sold under the tradename Ethyol®), leucovorin (also known as calcium leucovorin, citrovorum factor and folinic acid).
Examples
The following preparations of Intermediates (References) and compounds of Formula (I) (Examples) are given to enable those skilled in the art to more clearly understand and to practice the present disclosure. They should not be considered as limiting the scope of the disclosure, but merely as being illustrative and representative thereof. Reference 1
Synthesis of 3-(5-(azetidin-3-yl)-l-oxoisoindolin-2-yl)piperidine-2, 6-dione 2,2,2-trifluoroacetate
Figure imgf000085_0001
Step 1 : ( l-(tert-Butoxycarbonyl)azeti din-3 -yl)zinc(II) iodide
Figure imgf000085_0002
To a mixture of Zn dust (300 mg, 4.59 mmol, 1.30 eq.) in DMA (3.0 mL) was added 1,2-dibromoethene (66 mg, 0.35 mmol, 0.10 eq.) and the mixture was stirred at 65 °C under N2 for 30 min. The mixture was allowed to cool to rt and TMSC1 (38 mg, 0.35 mmol, 0.10 eq.) was added. After stirring the mixture for 30 min, a solution of tert-butyl 3 -iodoazetidine- 1 -carboxylate (1.00 g, 3.53 mmol, 1.00 eq.) in DMA (1.0 mL) was added dropwise. The mixture was stirred at 65 °C under N2 for 2 h, and then cooled to rt. The solution was used in next step without further purification.
Step 2: tert-Butyl 3-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-5-yl)azetidine-l-carboxylate
Figure imgf000085_0003
A solution of (l-(tert-butoxycarbonyl)azetidin-3-yl)zinc(II) iodide (600 mg, 1.72 mmol,
3.00 eq.) in DMA was slowly added to a mixture of 3-(5-bromo-l-oxoisoindolin-2-yl)piperidine- 2, 6-dione (185 mg, 0.57 mmol, 1.00 eq.), Cui (12 mg, 0.06 mmol, 0.10 eq.), Pd(dppf)C12 (44 mg, 0.06 mmol, 0.10 eq.) in DMA (2.0 mL). The mixture was stirred at 90 °C under N2 overnight. The mixture was concentrated and purified by column chromatography on silica gel (EtOAc) to give the title compound as a brown solid.
Step 3: 3-(5-(Azetidin-3-yl)-l-oxoisoindolin-2-yl)piperidine-2, 6-dione 2,2,2-trifluoroacetate
Figure imgf000085_0004
To a solution of tert-butyl 3-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-5-yl)azetidine-l- carboxylate (44 mg, 0.11 mmol, 1.00 eq.) in DCM (1.0 mL) was added TFA (0.2 mL) dropwise and the solution was stirred for 3 h. The resulting mixture was concentrated to give the title product as a brown oil.
Reference 2
Synthesis of 3-(4-(azetidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l- yl)piperidine-2, 6-dione 2,2,2-trifluoroacetate
Figure imgf000086_0001
Step 1 : tert-Butyl 3-(l-(2,6-dioxopiperidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]- imidazol-4-yl)azetidine- 1 -carboxylate
Figure imgf000086_0002
A solution of (l-(tert-butoxycarbonyl)azetidin-3-yl)zinc (II) iodide (600 mg, 1.72 mmol, 3.00 eq.) in DMA was slowly added to a mixture of 3-(4-bromo-3-methyl-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-l-yl)piperidine-2, 6-dione (193 mg, 0.57 mmol, 1.00 eq.) in DMA (2.0 mL) Cui (12 mg, 0.06 mmol, 0.10 eq.) and Pd(dppf)C12 (44 mg, 0.06 mmol, 0.10 eq.). The mixture was stirred at 90 °C under N2 overnight. The mixture was concentrated and purified by column chromatography on silica gel (EtOAc) to afford the title compound as a yellow solid. Step 2: 3-(4-(Azetidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine- 2,6-dione 2,2,2-trifluoroacetate
Figure imgf000086_0003
To a solution of tert-butyl 3-(l-(2,6-dioxopiperidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-4-yl)azetidine-l -carboxylate (23 mg, 0.055 mmol, 1.00 eq.) in DCM (1.0 mL) was added TFA (0.2 mL) dropwise and the solution was stirred at rt for 3 h. The resulting mixture was concentrated to give the title compound as a brown oil. Reference 3
Synthesis of 3-(l-Oxo-5-(piperazin-l-yl)isoindolin-2-yl)piperidine-2, 6-dione 2,2,2- tri fluoroacetate
Figure imgf000087_0001
Step 1 : tert-Butyl 4-(3-cyano-4-(methoxycarbonyl)phenyl)piperazine-l -carboxylate
Figure imgf000087_0002
To a stirred solution of methyl 2-cyano-4-fluorobenzoate (10.00 g, 55.80 mmol, 1.00 eq.) in DMSO (150.0 mL) was added tert-butyl piperazine- 1 -carboxylate (11.40 g, 61.38 mmol, 1.10 eq.) and DIEA (34.70 g, 268.96 mmol, 4.80 eq.), and the resulting mixture was stirred at 110 °C for 12 h. The mixture was diluted with water and extracted with EtOAc, and the combined organic layers were washed with brine, dried over Na2SO4. After filtration, the filtrate was concentrated and purified by silica gel column chromatography eluting with PEZEtOAc (3 : 1) to give the title compound as yellow solid.
Step 2: tert-Butyl 4-(3-formyl-4-(m ethoxy carbonyl)phenyl)piperazine-l -carboxylate
Figure imgf000087_0003
A mixture of tert-butyl 4-(3-cyano-4-(methoxycarbonyl)phenyl)piperazine-l -carboxylate (8.00 g, 23.20 mmol, 1.00 eq.), NaJEPCh.JhO (5.20 g, 48.70 mmol, 2.10 eq.) and Raney-Ni (5.10 g) in pyridine:H2O:AcOH=2:l : l (80.0 mL) was stirred at 70 °C for 12 h. The mixture was adjusted pH=7~8 with aq.NaHCCh, and the mixture was filtered, and extracted with EtOAc. The organic layer was washed with brine, dried over Na2SO4. After filtration, the filtrate was concentrated and the residue was purified by silica gel column chromatography eluting with PE/EtOAc (3 : 1) to give the title compound as yellow solid.
Step 3: tert-Butyl 4-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-5-yl)piperazine-l-carboxylate
Figure imgf000087_0004
A mixture of 3 -aminopiperidine-2, 6-dione hydrochloride (2.60 g, 15.50 mmol, 1.20 eq.) DIEA (4.03 g, 31.22 mmol, 2.42 eq.), AcOH (10.63 g, 188.76 mmol, 13.78 eq.) and tert-butyl 4-(3-formyl-4-(methoxycarbonyl)phenyl)piperazine-l -carboxylate (4.50 g, 12.90 mmol, 1.00 eq.) in DCM (50.0 mL) was stirred at 35 °C for 4 h. Then NaBH(OAc)3 (8.20 g, 38.70 mmol, 3.00 eq.) was added the above mixture, and the mixture was stirred at 40 °C for 12 h. The mixture was diluted with water and extracted with EtOAc. The organic layer was washed with brine, dried over Na2SO4. After filtration, the filtrate was concentrated, and the residue was purified by silica gel column chromatography eluting with PE/EtOAc (1 :2) to give the title compound as white solid.
Step 4: 3-(l-Oxo-5-(piperazin-l-yl)isoindolin-2-yl)piperidine-2, 6-dione 2,2,2-trifluoroacetate
Figure imgf000088_0001
To a solution of tert-butyl 4-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-5-yl)piperazine- 1-carboxylate (72 mg, 0.17 mmol, 1.00 eq.) in DCM (4.0 mL) was added TFA (1.0 mL). The resulting mixture was stirred at rt for 2 h and then concentrated to give the title compound as yellow oil.
The following reference compounds were synthesized by proceeding analogously as described in Reference 3.
Figure imgf000088_0003
Reference 5
Synthesis of l-(l-methyl-6-(piperidin-4-yl)-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione 2, 2, 2-2, 2, 2-tri fluoroacetate
Figure imgf000088_0002
Step 1 : 6-Bromo-l-methyl-lH-indazol-3-amine
Figure imgf000089_0001
To a stirred solution of 4-bromo-2-fluorobenzonitrile (10 g, 0.05 mol, 1.00 eq.) in EtOH (50.0 mL) was added methylhydrazine (57 g, 0.50 mol, 10.00 eq.) and the mixture was stirred at 100°C 30 h in sealed tube. Then the mixture was concentrated, and diluted water. The mixture was filtered to give the title compound as pale yellow solid.
Step 2: Methyl 3-((6-bromo-l-methyl-lH-indazol-3-yl)amino)propanoate
Figure imgf000089_0002
Methyl acrylate (209.00 g, 2.43 mol, 10.00 eq.) was added to a solution of 6-bromo-l- methyl-lH-indazol-3-amine (55.00 g, 0.24 mol, 1.00 eq.), DBU (55.00 g, 0.36 mol, 1.50 eq.), lactic acid (33.00 g, 0.36 mol, 1.50 eq.) at 0 °C, and the mixture was stirred at 90 °C 20 h under N2. The mixture was concentrated under reduced pressure and the residue was purified by column chromatography on silica gel (EtOAc:PE = 0 to 100%) to give the title compound as yellow solid. Step 3: Methyl 3-(l-(6-bromo-l-methyl-lH-indazol-3-yl)ureido)propanoate
Figure imgf000089_0003
NaOCN (26.00 g, 0.32 mol, 2.00 eq.) was added to a solution of methyl 3-((6-bromo-l- methyl-lH-indazol-3-yl)amino)propanoate (50.00 g, 0.16 mol, 1.00 eq.) in AcOH (500.0 mL), and the mixture was stirred at 80 °C 20 h under N2. The mixture was diluted with water and extracted with EtOAc. The organic layer was washed with brine, dried over ISfeSC After filtration, the filtrate was concentrated to give the title compound as yellow solid.
Step 4: l-(6-Bromo-l -methyl- lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-di one
Figure imgf000089_0004
To a solution of methyl 3-(l-(6-bromo-l-methyl-lH-indazol-3-yl)ureido)propanoate (56.00 g, 0.16 mol, 1.00 eq.) in MeCN (500.0 mL) was added Tirton-B (7.90 g, 0.05 mol, 0.30 eq.) and stirred at rt for 20 h under N2. The mixture was concentrated, then diluted with water. The mixture was filtered and solid was washed with water, air dried to give the title compound as pale yellow solid.
Step 5: tert-Butyl 4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)-5,6- dihydropyridine- 1 (2H)-carboxylate
Figure imgf000090_0001
To a mixture of l-(6-bromo-l-methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)- dione (1.10 g, 3.41 mmol, 1.00 eq.) in l,4-dioxane/H2O (10 mL/1 mL) was added tert-butyl 4- (4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate (1.60 g, 5.11 mmol, 1.50 eq.), K3PO4 (2.20 g, 10.22 mmol, 3.00 eq.) and X-Phos-Pd G3 (289 mg, 0.34 mmol, 0.10 eq. ), and the mixture was stirred at 60 °C under N2 for 3 h. The mixture was diluted with DCM, and the organic layer was washed with brine, dried over ISfeSC After filtration, the filtrate was concentrated, and the residue was purified by column chromatography on silica gel (DCM:MeOH = 20 : 1) to give the title compound as yellow solid.
Step 6: tert-Butyl 4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6- yl)piperidine- 1 -carboxylate
Figure imgf000090_0002
A mixture of tert-butyl 4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH- indazol-6-yl)-5,6-dihydropyridine-l(2H)-carboxylate (300 mg, 0.71 mmol, 1.00 eq.), Pd/C (150 mg, 50% wt) and Pd(OH)2 (150 mg, 50% wt) in THF (20.0 mL) was stirred under H2 at 50 °C and 50 psi overnight. The mixture was filtered and the filtrate was concentrated and purified by column chromatography on silica gel (PE:EtOAc = 1 : 1) to give the title compound as yellow solid. Step 7: l-(l-Methyl-6-(piperidin-4-yl)-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione 2, 2, 2-2, 2, 2-tri fluoroacetate
Figure imgf000091_0001
A mixture of tert-butyl 4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH- indazol-6-yl)piperi dine- 1 -carboxylate (100 mg, 0.25 mmol, 1.00 eq.) in TFA/DCM (0.5 mL/2.0 mL) was stirred at rt for 2 h. The mixture was concentrated to give the title compound as brown oil.
The following Reference compounds were synthesized by proceeding analogously as described in Reference 5.
Figure imgf000091_0004
Reference 8
Synthesis of 3-((4-(Piperidin-4-yl)phenyl)amino)piperidine-2, 6-dione 2,2,2-trifluoroacetate
Figure imgf000091_0002
Step 1 : tert-Butyl 4-(4-nitrophenyl)-5,6-dihydropyridine-l(2H)-carboxylate
Figure imgf000091_0003
A mixture of l-bromo-4-nitrobenzene (1.0 g, 4.95 mmol, 1.00 eq), tert-butyl 4-(4, 4,5,5- tetramethyl-l,3,2-dioxaborolan-2-yl)-5,6-dihydropyridine-l(2H)-carboxylate (2.30 g, 7.43 mmol, 1.50 eq.), K2CO3 (1.37 g, 9.90 mmol, 2.00 eq.), and Pd(dppf)C12 (724 mg, 0.99 mmol, 0.20 eq) in dioxane/EEO (15 mL, 5/1 ) was stirred at 100 °C for 4 h. The mixture was filtered and extracted with EtOAc. The combined organic layers were dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated. The residue was purified by silica flash column PEZEtOAc (10: 1) to give the title compound as yellow solid.
Step 2: tert-Butyl 4-(4-aminophenyl)piperidine-l -carboxylate
Figure imgf000092_0001
A mixture of tert-butyl 4-(4-nitrophenyl)-5,6-dihydropyridine-l(2H)-carboxylate (1.20 g, 3.95 mmol, 1.00 eq.), Pd/C (360 mg, 10% w/w) in MeOH/THF (30 mL, 1 : 1) was stirred at 45 °C under EE overnight. The mixture was filtered, and the filtrate was concentrated. The residue was purified by silica flash column PE/EtOAc (3:1) to give the title compound as yellow solid.
Step 3: tert-Butyl 4-(4-((2,6-dioxopiperidin-3-yl)amino)phenyl)piperidine-l-carboxylate
Figure imgf000092_0002
A mixture of tert-butyl 4-(4-aminophenyl)piperidine-l -carboxylate (332 mg, 1.20 mmol, 1.00 eq.), 3 -brom opiperidine-2, 6-dione (242 mg, 1.26 mmol, 1.05 eq.) and NaHCCh (302 mg, 3.60 mmol, 3.00 eq.) in DMF (4.0 mL) was stirred at 70 °C overnight. The mixture was diluted with water and extracted with EtOAc. The combined organic layers were dried over anhydrous Na2SO4, filtered, and then concentrated. The residue was purified by silica flash column PE/EtOAc (1 : 1) to give the title compound as yellow solid.
Step 4: 3 -((4-(Piperidin-4-yl)phenyl)amino)piperidine-2, 6-dione 2,2,2-trifluoroacetate
Figure imgf000092_0003
TFA (0.5 mL) was added to a mixture of tert-butyl 4-(4-((2, 6-dioxopiperi din-3 - yl)amino)phenyl)piperidine-l -carboxylate (100 mg, 0.26 mmol, 1.00 eq.) in DCM (2.0 mL) and the mixture was stirred at rt for 2 h. The mixture was concentrated to give the title compound as a yellow solid. Reference 9
Synthesis of 3-(4-(piperazin-l-yl)phenyl)piperidine-2, 6-dione 2,2,2-trifluoroacetate
Figure imgf000093_0001
Step 1 : 2,6-Bis(benzyloxy)-3-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)pyridine
Figure imgf000093_0002
A mixture of 2,6-bis(benzyloxy)-3-bromopyridine (19.00 g, 0.05 mol, 1.00 eq.), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(l,3,2-dioxaborolane) (19.60 g, 0.08 mol, 1.50 eq.), KO Ac (10.00 g, 0.10 mol, 2.00 eq.), and Pd(dppf)C12 (3.7 g, 5.00 mmol, 0.10 eq.) in 1,4-dioxane (200.0 mL) was stirred at 100 °C for 25 h under N2. The mixture was diluted with water and extracted with EtOAc, and the combined organic layer was washed with brine, dried over Na2SO4. After filtration, the filtrate was concentrated and the residue was purified by silica gel column chromatography eluting with EtOAc:PE= 0 to 100% to give the title compound as yellow solid. Step 4: 2,6-Bis(benzyloxy)-3-(4-bromophenyl)pyridine
Figure imgf000093_0003
A mixture of 2,6-bis(benzyloxy)-3-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)pyridine (4.42 g, 10.60 mmol, 1.20 eq.), l-bromo-4-iodobenzene (2.50 g, 8.83 mol, 1.00 eq.), K3PO4 (5.63 g, 26.50 mmol, 3.00 eq.), and Pd(PPhs)4 (510 mg, 0.44 mmol, 0.05 eq.) in l,4-dioxane/H2O=10: l (40.0 mL) was stirred at 100 °C for 16 h under N2. The mixture was diluted with water and extracted with EtOAc, and the combined organic layer was washed with brine, dried over Na2SO4. After filtration, the filtrate was concentrated and the residue was purified by silica gel column chromatography eluting with EtOAc:PE= 0 to 100% to give the title compound as yellow solid. Step 5: tert-Butyl 4-(4-(2,6-bis(benzyloxy)pyridin-3-yl)phenyl)piperazine-l-carboxylate
Figure imgf000094_0001
A mixture of 2,6-bis(benzyloxy)-3-(4-bromophenyl)pyridine (500 mg, 1.12 mmol, 1.00 eq.), tert-butyl piperazine- 1 -carboxylate (417 mg, 2.24 mmol, 2.00 eq.), CS2CO3 (730 mg, 2.24 mmol, 2.00 eq.), Pd2(dba)s (51 mg, 0.06 mmol, 0.05 eq.), and RuPhos (52 mg, 0.11 mmol, 0.10 eq.) in toluene (15.0 mL) was stirred at 110 °C for 20 h under N2. The mixture was diluted with water and extracted with EtOAc, and the combined organic layer was washed with brine, dried over Na2SO4. After filtration, the filtrate was concentrated and the residue was purified by silica gel column chromatography eluting with EtOAc:PE= 0 to 100% to give the title compound as yellow solid.
Step 6: tert-Butyl 4-(4-(2,6-dioxopiperidin-3-yl)phenyl)piperazine-l -carboxylate
Figure imgf000094_0002
A mixture of tert-butyl 4-(4-(2,6-bis(benzyloxy)pyridin-3-yl)phenyl)piperazine-l- carboxylate (260 mg, 0.47 mmol, 1.00 eq.), 10% Pd/C (260 mg) in EtOAc (5.0 mL) and 1,4- dioxane (5.0 mL) was stirred at rt for 20 h under H2. The mixture was filtered and the filtrate was concentrated to give the title compound as yellow oil.
Step 7: 3-(4-(Piperazin-l-yl)phenyl)piperidine-2, 6-dione 2,2,2-trifluoroacetate
Figure imgf000094_0003
TFA (0.5 mL) was added to a stirred solution of tert-butyl 4-(4-(2, 6-dioxopiperi din-3 - yl)phenyl)piperazine-l -carboxylate (160 mg, 0.43 mmol, 1.00 eq.) in DCM (2.0 mL) and the mixture was stirred at rt for 2 h under N2. The mixture was concentrated to give the title compound as yellow oil. Reference 10
Synthesis of l-(6-(piperidin-4-yl)-l-(2,2,2-trifluoroethyl)-lH-indazol-3-yl)dihydropyrimidine- 2,4(lH,3H)-dione 2,2,2-trifluoroacetate
Figure imgf000095_0001
Step 1 : 6-Bromo-l-(2,2,2-trifluoroethyl)-lH-indazol-3-amine
Figure imgf000095_0002
NaH (2.10 g, 52.83 mmol, 2.00 eq.) was added to a stirred solution of 6-bromo-lH- indazol-3 -amine (5.60 g, 26.42 mmol, 1.00 eq.) in DMF (20.0 mL) at 0 °C and the mixture was stirred at 0 °C for Ih. 2,2,2-Trifluoroethyl trifluoromethanesulfonate (6.7 g, 29.06 mmol, 1.10 eq.) was added and the mixture was stirred at rt for 3 h under N2. The mixture was poured into cold water and filtered. The solid was washed with water and dried to give the title compound as yellow solid.
Step 2: l-(6-(Piperidin-4-yl)-l-(2,2,2-trifluoroethyl)-lH-indazol-3-yl)dihydropyrimidine-
2,4(lH,3H)-dione 2,2,2-trifluoroacetate
Figure imgf000095_0003
The title compound was synthesized by proceeding analogously as described in Reference 5, Steps 2-7. Reference 11
Synthesis of 1 -(1 -methyl-6-(piperazin- 1 -yl)- lH-indazol-3 -yl)dihydropyrimidine-2,4( 1H,3H)- dione
Figure imgf000096_0001
Step 1 : Benzyl 4-(4-cyano-3-fluorophenyl)piperazine-l -carboxylate
Figure imgf000096_0002
A mixture of 2,4-difluorobenzonitrile (18.95 g, 136.20 mmol, 1.50 eq.), benzyl piperazine- 1-carboxylate (20 g, 90.80 mmol, 1.00 eq.) and potassium carbonate (25.10 g, 181.6 mmol, 2.00 eq.) in ACN (200.0 mL) was stirred at 80 °C under N2 for 16 h. The mixture was filtered, and the filtrate was concentrated. The residue was purified by silica gel column chromatography eluting with PE/EtOAc (3 : 1) to give the title compound as white solid.
Step 2: Benzyl 4-(3-amino-lH-indazol-6-yl)piperazine-l-carboxylate
Figure imgf000096_0003
A mixture of benzyl 4-(4-cyano-3-fluorophenyl)piperazine-l -carboxylate (11.00 g, 32.40 mmol, 1.00 eq.) and ^JL/LEO (10.14g, 161.99 mmol, 5.00 eq) in BuOH (100.0 mL) was stirred at 100 °C under N2 for 16 h. The mixture was concentrated and purified by flash chromatography to give the title compound as yellow solid.
Step 3: Benzyl 4-(3-amino-l-methyl-lH-indazol-6-yl)piperazine-l-carboxylate
Figure imgf000096_0004
To a solution of benzyl 4-(3-amino-lH-indazol-6-yl)piperazine-l-carboxylate (4.00 g, 11.40 mmol, 1.00 eq.) in dry DMF (50.0 mL) at 0 °C was added NaH (0.91 g, 22.80 mmol, 2.00 eq.) under N2, and the mixture was stirred at rt for 30 min. The mixture was cooled to 0 °C, CH3I (1.78 g, 12.54 mmol, 1.10 eq.) in dry DMF (10.0 mL) was added dropwise, and the mixture was stirred for 3 h. The mixture was quenched with water, extracted with EtOAc. The combined organic layers were washed with brine, dried with Na2SO4. After filtration, the filtrate was concentrated and the residue was purified by silica gel column chromatography eluting with DCM/MeOH = (50: 1) to give the title compound as yellow solid.
Step 4: Benzyl 4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)- piperazine- 1 -carboxylate
Figure imgf000097_0001
The title compound was synthesized by proceeding analogously as described in Reference 5, Steps 2-4.
Step 5: l-(l-Methyl-6-(piperazin-l-yl)-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione
Figure imgf000097_0002
A mixture of benzyl 4-[3-(2,4-dioxo-l,3-diazinan-l-yl)-l-methylindazol-6-yl]piperazine- 1-carboxylate (500 mg, 1.08 mmol, 1.00 eq.), 10% Pd/C (400 mg) and ammonium formate (682 mg, 10.81 mmol, 10.00 eq.) in MeOH (20.0 mL) was stirred at 60 °C under N2 for 16 h. The mixture was filtered and the filtrate was concentrated to give the title compound as white solid.
The following Reference compound was synthesized by proceeding analogously as described in Reference 11.
Figure imgf000097_0003
Reference 13
Synthesis of l-(6-(3,3-difluoropiperidin-4-yl)-l-methyl-lH-indazol-3-yl)dihydropyrimidine- 2,4(lH,3H)-dione 2,2,2-2,2,2-trifluoroacetate
Figure imgf000098_0001
Step 1 : l-(l-Methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-lH-indazol-3- yl)dihydropyrimidine-2,4(lH,3H)-dione
Figure imgf000098_0002
A mixture of l-(6-bromo-l-methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione
(626 mg, 2.00 mmol, 1.00 eq.), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(l,3,2-dioxaborolane) (762 mg, 3.00 mmol, 1.50 eq.), KO Ac (589 mg, 6.00 mmol, 3.00 eq.) and Pd(dppf)C12 (146 mg, 0.20 mmol, 0.10 eq.) in 1,4-dioxane (10 mL) was stirred at 85 °C under N2 overnight. The mixture was filtered and the filtrated was concentrated. The residue was purified by column chromatography on silica gel (DCM:MeOH = 100 : 1) to give the title compound as a yellow solid.
Step 2: tert-Butyl 4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)-3,3- difluoro-3,6-dihydropyridine-l(2H)-carboxylate
Figure imgf000098_0003
A mixture of l-(l-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-lH-indazol-3- yl)dihydropyrimidine-2,4(lH,3H)-dione (800 mg, 2.00 mmol, 1.00 eq.), tert-butyl 3,3-difluoro-4- (((trifluoromethyl)sulfonyl)oxy)-3,6-dihydropyridine-l(2H)-carboxylate (1.10 g, 3.00 mmol, 1.50 eq.), Na2CC>3 (636 mg, 6.00 mmol, 3.00 eq.), Pd(dppf)C12 (146 mg, 0.20 mmol, 0.1 eq.) and H2O (2.5 mL) in 1,4-dioxane (10.0 mL) was stirred at 55 °C under N2 overnight. The mixture was filtered and the filtrated was concentrated. The residue was purified by column chromatography on silica gel (DCM:MeOH = 120 : 1) to give the title compound as a yellow solid. Step 3: tert-Butyl 4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)-3,3- difluoropiperidine-1 -carboxylate
Figure imgf000099_0001
A mixture of tert-butyl 4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH- indazol-6-yl)-3,3-difluoro-3,6-dihydropyridine-l(2H)-carboxylate (940 mg, 2.00 mmol, 1.00 eq.), 10% Pd/C (900mg) and Pd(OH)2 (900mg) in MeOH (10.0 mL) was stirred at 50 °C under H2 (50 PSI) overnight. The mixture was filtered, and the filtrate was concentrated. The residue was purified by column chromatography on silica gel (DCM:MeOH = 1 : 1) to give the title as yellow solid.
Step 4: l-(6-(3,3-Difluoropiperidin-4-yl)-l-methyl-lH-indazol-3-yl)dihydropyrimidine- 2,4(lH,3H)-dione 2,2,2-2,2,2-trifluoroacetate
Figure imgf000099_0002
A mixture of tert-butyl 4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH- indazol-6-yl)-3,3-difluoropiperidine-l-carboxylate (102 mg, 0.22 mmol, 1.00 eq.) in TFA/DCM (0.5 mL/2.0 mL) was stirred at rt for 2h. The mixture was concentrated to give the title compound as brown oil.
Reference 14
Synthesis of tert-butyl 6-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)- 2,6-diazaspiro[3 ,3]heptane-2-carboxylate 2,2,2-trifluoroacetate
Figure imgf000099_0003
Step 1: tert-Butyl 6-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)-2,6- di azaspiro [3.3 ]heptane-2 -carb oxy 1 ate
Figure imgf000099_0004
A mixture of l-(6-bromo-l-methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione (300 mg, 0.93 mmol, 1.00 eq.), tert-butyl 2,6-diazaspiro[3.3]heptane-2-carboxylate (570 mg, 2.32 mmol, 2.50 eq.), t-BuOK(627 mg, 5.6 mmol, 6.00 eq.), t-BuBrettphos Pd G3 (81mg, 0.093 mmol, 0.10 eq.) and t-BuXphos (76mg, 0.186 mmol, 0.20 eq.) in 1,4-dioxane (6 mL) was stirred at 100 °C under N2 for 3 h. The mixture was diluted with DCM and the organic layer was washed with water and brine, dried over ISfeSC After filtration, the filtrate was concentrated, and the residue was purified by column chromatography on silica gel (DCM:MeOH = 20 : 1) to give the title compound as yellow solid.
Step 2: l-(l-Methyl-6-(2,6-diazaspiro[3.3]heptan-2-yl)-lH-indazol-3-yl)dihydropyrimidine- 2,4(lH,3H)-dione 2,2,2-2,2,2-trifluoroacetate
Figure imgf000100_0001
A mixture of tert-butyl 6-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH- indazol-6-yl)-2,6-diazaspiro[3.3]heptane-2-carboxylate (90 mg, 0.204 mmol, 1.00 eq.) in TFA/DCM (0.5 mL/2 mL) was stirred at rt for 2 h. The mixture was concentrated to give the title compound as brown oil.
Reference 15
Synthesi s of 1 -(6-( 1 -(3 -(3 -((4-aminopiperidin- 1 -y l)sulfonyl)phenyl)-2,2-dimethylpropyl) piperidin-4-yl)-l -methyl- lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
Figure imgf000100_0002
Step 1 : tert-Butyl (l-((3-(2,2-dimethyl-3-oxopropyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000100_0003
A mixture of tert-butyl N-[l-[3-(bromomethyl)phenyl]sulfonyl-4-piperidyl]carbamate (1.0 g, 2.31 mmol), 2-methylpropanal (416 mg, 5.77 mmol), tetrabutylammonium iodide (85.24 mg, 0.23 mmol) and sodium hydroxide (323.06 mg, 8.08 mmol) in 1,4-dioxane (10 mL) was heated to 70 °C and stirred for 3 h under argon atmosphere. After cooling, the mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with water, brine, and dried over anhydrous sodium sulfate. After filtration, the filtrate was concentrated and the residue was purified by silica gel chromatography, eluted with ethyl acetate/petroleum ether (0-20% with 5% dichloromethane) to afford the title compound as a white solid.
Step 2: tert-Butyl (l-((3-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol- 6-yl)piperidin-l-yl)-2,2-dimethylpropyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000101_0001
Titanium tetraisopropanolate (1.24 g, 4.37 mmol) was added to a mixture of tert-butyl (1- ((3-(2,2-dimethyl-3-oxopropyl)phenyl)sulfonyl) piperidin-4-yl)carbamate (530 mg, 1.25 mmol) and l-(l-methyl-6-(piperidin-4-yl)-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride (408.7 mg, 1.25 mmol) in anhydrous N-methyl-2-pyrrolidone (5.3 mL), and the mixture was heated to 90 °C for 3 h under argon atmosphere. The mixture was cooled to rt and sodium cyanoborohydride (274.56 mg, 4.37 mmol) was added, and the mixture was stirred at 25 °C for 1 h. The mixture was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with water, brine, dried over anhydrous sodium sulfate. After filtration, the filtrate was concentrated and the residue was purified by silica gel chromatography, eluted with methanol/dichloromethane (0-5%) to afford the title compound as a white solid. Step 3: l-(6-(l-(3-(3-((4-Aminopiperidin-l-yl)sulfonyl)phenyl)-2,2-dimethylpropyl) piperidin-4- yl)-l-methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
Figure imgf000101_0002
To a stirred solution of tert-butyl (l-((3-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)- l-methyl-lH-indazol-6-yl)piperidin-l-yl)-2,2-dimethylpropyl)phenyl) sulfonyl)piperidin-4- yl)carbamate (280 mg, 0.38 mmol) in dichloromethane (3 mL) was added 4 M hydrogen chloride in dioxane (1.5 mL) at 0 °C and stirred for 1 h. The mixture was concentrated under reduced pressure to afford the title compound as a white solid. Reference 16
Synthesis of 1 -(6-(l -(2-(3 -((4-aminopiperidin- 1 -yl)sulfonyl)benzyl)butyl)piperidin-4-yl)- 1 - methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
Figure imgf000102_0001
Step 1 : Ethyl (E)-2-(3-((4-((tert-butoxycarbonyl)amino)piperidin-l-yl)sulfonyl)benzylidene)- butanoate
Figure imgf000102_0002
Ethyl 2-(diethoxyphosphoryl)butanoate (412 mg, 1.63 mmol, 1.20 eq.) was added to a stirred solution of NaH (60 % in mineral oil, 82 mg, 2.04 mmol, 1.50 eq.) in THF (10.0 mL) at 0 °C and this mixture was stirred at 0 °C for 30 min. tert-Butyl (l-((3-formylphenyl)- sulfonyl)piperidin-4-yl)carbamate (500 mg, 1.36 mmol, 1.00 eq.) in THF (10.0 mL) was added. The mixture was stirred at 0 °C for 30 min, and then slowly warmed to rt and stirred for 12 h. The mixture was quenched with H2O at 0 °C, and extracted with EtOAc. The combined organic layers were washed with brine, and dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure, and the residue was purified by column chromatography on silica gel, eluting with DCM:MeOH (0~5 %), to afford the title compound as a white solid. Step 2: Ethyl 2-(3-((4-((tert-butoxycarbonyl)amino)piperidin-l-yl)sulfonyl)benzyl)butanoate
Figure imgf000102_0003
A mixture of ethyl (E)-2-(3-((4-((tert-butoxycarbonyl)amino)piperidin-l-yl)- sulfonyl)benzylidene)butanoate (400 mg, 0.86 mmol, 1.00 eq.), 10% Pd/C (200 mg) in MeOH (10.0 mL) was stirred at rt under 1 atm H2 for 12 h. The mixture was filtered, and the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluting with DCM:MeOH (0~5 %) to afford the title compound as a pale yellow oil. Step 3: tert-Butyl (l-((3-(2-(hydroxymethyl)butyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000103_0001
LiAlEL (2.5 M in THF, 1.15 mL, 2.88 mmol, 3.00 eq.) was added to a stirred solution of ethyl 2-(3-((4-((tert-butoxycarbonyl)amino)piperidin-l-yl)sulfonyl)benzyl)- butanoate (450 mg, 0.96 mmol, 1.00 eq.) in THF (20.0 mL) at -10 °C, and the mixture was stirred for 3 h. The mixture was diluted with DCM, quenched with H2O, and the resulting mixture was stirred at rt for 30 min. The mixture was filtered, and the filtrate was concentrated under reduced pressure. The residue was purified by column chromatography on silica gel, eluting with DCM:MeOH (0~5 %), to afford the title compound as a pale yellow solid.
Step 4: tert-Butyl (l-((3-(2-formylbutyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000103_0002
To a stirred solution of tert-butyl (l-((3-(2-(hydroxymethyl)butyl)phenyl)sulfonyl)- piperidin-4-yl)carbamate (150 mg, 0.35 mmol, 1.00 eq.) in DCM (7.0 mL) was added Dess-Martin periodinane (223 mg, 0.53 mmol, 1.50 eq.) at 0 °C and the mixture was stirred under N2 for 2 h. The mixture was filtered and concentrated under reduced pressure. The residue was purified by column chromatography on silica gel, eluting with DCM: MeOH (0~2 %), to afford the title compound as a pale yellow solid.
Step 5: tert-Butyl (l-((3-(2-((4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol- 6-yl)piperidin-l-yl)methyl)butyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000103_0003
NaBH(OAc)3 (180 mg, 0.85 mmol, 2.5 eq.) in DMA (2.0 mL) was added to a mixture of l-(l-methyl-6-(piperidin-4-yl)-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)- dione hydrochloride (127 mg, 0.35 mmol, 1.00 eq.), TEA (106 mg, 1.05 mmol, 3.00 eq.) and tert-butyl (l-((3-(2-formylbutyl)phenyl)sulfonyl)piperidin-4-yl)carbamate (149 mg, 0.35 mmol, 1.00 eq.) in DMA (6.0 mL) at 0 °C, and the mixture was stirred at rt for 12h. The mixture was diluted with water and extracted with EtOAc. The combined organic layers were washed with brine, and dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure, and the residue was purified by column chromatography on silica gel, eluting with DCM:MeOH (0~5 %), to afford the title compound as a pale yellow solid. Step 6 : 1 -(6-(l -(2-(3 -((4- Aminopiperidin- 1 -yl)sulfonyl)benzyl)butyl)piperidin-4-yl)- 1 -methyl- 1H- indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
Figure imgf000104_0001
HC1 in EtOAc (2 M, 5.0 mL) was added to tert-butyl (l-((3-(2-((4-(3-(2,4- dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)piperidin-l-yl)methyl)- butyl)phenyl)sulfonyl)piperidin-4-yl)carbamate (170 mg, 0.23 mmol, 1.00 eq.) at rt and it was allowed to stir for 3h. The mixture was concentrated under reduced pressure to afford the title compound as a pale yellow solid.
Reference 17
Synthesis of 4-((4-aminopiperidin-l-yl)sulfonyl)-2-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)- yl)-l-methyl-lH-indazol-6-yl)piperidin-l-yl)-2-methylpropyl)benzonitrile hydrochloride
Figure imgf000104_0002
Step 1 : 3-Bromo-4-cyanobenzenesulfonyl chloride
Figure imgf000104_0003
A mixture of 4-amino-2-bromobenzonitrile (5.0 g, 25.38 mmol, 1.00 eq.) in cone.
HCI/H2O (60.0 mL/225.0 mL) was warmed to 90 °C until fully dissolved. The mixture was cooled to 0~5 °C. A solution of NaNCL (1.9 g, 27.54 mmol, 1.08 eq.) in H2O (5 mL) was added dropwise to above mixture then followed by addition of CuCl (0.2 g, 2.02 mmol, 0.08 eq.) in SOCI2/H2O (8.0 mL/50.0 mL) dropwise at 0~5 °C. The resulting mixture was stirred at 0~5 °C for 1 h. The mixture was diluted with water and extracted with EtOAc. The combined organic layers were washed with water, brine, and the organic layer was dried over anhydrous Na2SO4 and filtered. The filtrate was concentrated under reduced pressure and the residue was purified by silica gel column chromatography, eluting with PE:EtOAc = 4: 1 to afford the title compound as a white oil. Step 2: tert-Butyl (l-((3-bromo-4-cyanophenyl)sulfonyl)piperidin-4-yl)carbamate
D Brv ° C| YX 'O
NC
Figure imgf000105_0001
3-Bromo-4-cyanobenzenesulfonyl chloride (500 mg, 1.79 mmol, 1.00 eq.) in DCM (5.0 mL) was added to a stirred solution of tert-butyl piperidin-4-ylcarbamate (359.2 mg, 1.79 mmol, 1.00 eq.) and TEA (542.4 mg, 5.37 mmol, 3.00 eq.) in DCM (5.0 mL) dropwise at 0 °C. The mixture was stirred at rt for 2h. The mixture was poured into water and extracted with DCM. The combined organic layer was washed with water and brine, dried over Na2SO4. After filtration, the filtrate was concentrated and the residue was purified by flash chromatography to give the title compound as brown solid. Step 3: tert-Butyl (l-((4-cyano-3-(2-methyl-3-oxopropyl)phenyl)sulfonyl)piperidin-4-yl)- carbamate
Figure imgf000105_0002
To a stirred solution of tert-butyl (l-((3-bromo-4-cyanophenyl)sulfonyl)piperidin-4-yl)- carbamate (400 mg, 0.90 mmol, 1.00 eq.) in DMF (8.0 mL) was added 2-(di-tert-butyl- phosphaneyl)-l -phenyl- IH-indole (20 mg, 0.06 mmol, 0.06 eq.), N-cyclohexyl-N- methylcyclohexanamine (194.4 mg, 1.17 mmol, 1.1 eq.), 2-methylprop-2-en-l-ol (130 mg, 1.8 mmol, 2.00 eq.) and Pd2(dba)s (16.8 mg, 0.02 mmol, 0.02 eq.). The mixture was purged with N2 and stirred at 100 °C for 5h. The mixture was poured into water, extracted with EtOAc, and the combined organic layers were washed with water and brine, dried over Na2SO4. After filtration, the filtrate was concentrated and the residue was purified by flash chromatography to give the title compound as white solid.
Step 4: 4-((4-Aminopiperidin-l-yl)sulfonyl)-2-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)- l-methyl-lH-indazol-6-yl)piperidin-l-yl)-2-methylpropyl)benzonitrile hydrochloride
Figure imgf000106_0001
The title compound was synthesized by proceeding analogously as described in Reference
16, Steps 5-6.
Reference 18
Synthesis of (S)-l-(6-(l-(2-(3-((4-aminopiperidin-l-yl)sulfonyl)phenoxy)propyl)piperidin-4-yl)-l- methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
Figure imgf000106_0002
Step 1 : tert-Butyl(l-((3-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl)sulfonyl)piperidin-4- yl) carbamate
Figure imgf000106_0003
To a stirred solution of tert-butyl (l-((3-bromophenyl)sulfonyl)piperidin-4-yl)carbamate (5 g, 11.92 mmol, 1 eq.) and 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(l,3,2-dioxaborolane) (3.03 g, 11.92 mmol, 1 eq.) in 1,4-dioxane (50 mL) was added Pd(dppf)C12 (0.87 g, 1.19 mmol, 0.1 eq.) and AcOK (3.51 g, 35.77 mmol, 3 eq.) at rt under nitrogen atmosphere, and the resulting mixture was stirred for 2 h at 80 °C. The mixture was quenched with water and extracted with EtOAc. The combined organic layers were washed with water and brine, dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure to afford the title compound as a yellow solid.
Step 2: tert-Butyl (l-((3-hydroxyphenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000106_0004
To a stirred solution of tert-butyl(l-((3-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)- phenyl)sulfonyl)piperidin-4-yl) carbamate (9 g, 19.3 mmol, 1 eq.) in ACN (90 mL) was added H2O2 (30%, 45 mL) at rt. The resulting mixture was stirred for 10 min at room temperature. The mixture was quenched with sat. ISfeSCh solution at 0°C and the resulting mixture was extracted with EtOAc. The combined organic layers were washed with water and brine, dried over anhydrous ISfeSC After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluted with EtOAc/PE (0-50%) to afford the title compound as a white solid.
Step 3: Methyl (S)-2-(3-((4-((tert-butoxycarbonyl)amino)piperidin-l-yl)sulfonyl)phenoxy)- propanoate
Figure imgf000107_0001
To a stirred mixture of tert-butyl (l-((3-hydroxyphenyl)sulfonyl)piperidin-4-yl)carbamate (2 g, 5.6 mmol, 1.0 eq.), PPI13 (2.2 g, 8.4 mmol, 1.5 eq.) and methyl (2S)-2-hydroxypropanoate (600 mg, 5.78 mmol, 1.03 eq.) in THF (20 mL) was added DIAD (1.36 g, 6.73 mmol, 1.20 eq.) dropwise at 0 °C under nitrogen atmosphere. The mixture was stirred for 2 h at room temperature. The mixture was quenched with water and the resulting mixture was extracted with EtOAc. The combined organic layers were washed with water and brine, dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluted with EtOAc/PE (0-25%) to afford the title compound as a white solid.
Step 4: tert-Butyl (S)-(l-((3-((l-hydroxypropan-2-yl)oxy)phenyl)sulfonyl)piperidin-4-yl)- carbamate
Figure imgf000107_0002
To a stirred solution of methyl (S)-2-(3-((4-((tert-butoxycarbonyl)amino)piperidin-l- yl)sulfonyl)phenoxy)propanoate (1.6 g, 3.62 mmol, 1.0 eq.) in THF (16 mL) was added 2 M LiAlH4 in THF (3.6 mL, 7.2 mmol, 2 eq.) dropwise at 0 °C. The resulting mixture was stirred for 2 h at 0°C. The mixture was quenched with water and 15% NaOH aq. The resulting mixture was diluted with EtOAc, and filtered. The filtrate was concentrated under reduced pressure to give the title compound as a yellow solid. Step 5: (S)-l-(6-(l-(2-(3-((4-Aminopiperidin-l-yl)sulfonyl)phenoxy)propyl)piperidin-4-yl)-l- methyl- lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-di one hydrochloride
Figure imgf000108_0001
The title compound was synthesized by proceeding analogously as described in Reference 16, Steps 4-6.
Reference 19
Synthesi s of 1 -(6-( 1 -(3 -(3 -((4-aminopiperidin- 1 -yl)sulfonyl)phenyl)-2-methylpropyl)- piperidin-4-yl)-l -methyl- lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
Figure imgf000108_0002
Step 1 : tert-Butyl (l-((3-(2-methyl-3-oxopropyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000108_0003
A solution of tert-butyl (l-((3-bromophenyl)sulfonyl)piperidin-4-yl)carbamate(5.1 g, 12.2 mmol, 1.0 eq.), Pd(AcO)2 (0.27 g, 1.2 mmol, 0.1 eq.), 2-methylprop-2-en-l-ol (2.6 g, 36.5 mmol, 3.0 eq.), NaHCCh (2 g, 24.3 mmol, 2.0 eq.) and tetrabutylammonium bromide (19.6 g, 60.8 mmol, 5.0 eq.) in DMF (51 mL) was stirred for 3 h at 100°C under nitrogen atmosphere. The resulting mixture was diluted with EtOAc and the organic layer was washed with water and brine, dried over anhydrous ISfeSC After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluted with EtOAc/PE (0-25%) to afford the title compound as a light yellow solid. Step 2: tert-Butyl (l-((3-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-
6-yl)piperidin-l-yl)-2-methylpropyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
To a stirred solution of l-(l-methyl-6-(piperidin-4-yl)-lH-indazol-3-yl)dihydropyrimidine- 2,4(lH,3H)-dione hydrochloride (4.06 g, 11.2 mmol, 1.0 eq.) in DMAc (46 mL) was added TEA (5.7 g, 56 mmol, 5.0 eq.) at 0 °C. The resulting mixture was stirred for 5 min at rt. To the above mixture was added tert-butyl (l-((3-(2-methyl-3-oxopropyl)phenyl)sulfonyl)piperidin-4- yl)carbamate (4.6 g, 11.2 mmol, 1.0 eq.). The resulting mixture was stirred for 1 h at rt. Then NaBH(AcO)3 (5.3 g, 25.2 mmol, 2.25 eq.) was added in portions at 0 °C and stirred for 2 h at rt. The mixture was diluted with H2O and extracted with EtOAc. The combined organic layers were washed with brine and dried over anhydrous ISfeSC After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluted with EtOAc/PE (0-100%) to afford the title compound as a white solid.
Step 3 : 1 -(6-(l -(3 -(3 -((4- Aminopiperidin- 1 -yl)sulfonyl)phenyl)-2-methylpropyl)piperidin-4-yl)- 1 - methyl- lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-di one hydrochloride
To a stirred solution of tert-butyl (l-((3-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)- l-methyl-lH-indazol-6-yl)piperidin-l-yl)-2-methylpropyl)phenyl)sulfonyl)piperidin-4-yl)- carbamate (3.7 g, 5.1 mmol, 1.0 eq.) in DCM (37 mL) was added 4M HC1 in 1,4-dioxane (18 mL) dropwise at 0 °C. The resulting mixture was stirred for 1 h at rt. The mixture was concentrated under reduced pressure to give the title compound as a light yellow solid.
The following reference compounds were synthesized by proceeding analogously as described in Reference 19.
Figure imgf000109_0001
Figure imgf000110_0004
Reference 20
Synthesis of l-(6-(l-(3-(3-((4-aminopiperidin-l-yl)sulfonyl)phenyl)-2-hydroxy-2-methylpropyl)- piperidin-4-yl)-l -methyl- lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
Figure imgf000110_0001
Step 1 : tert-Butyl (l-((3-(2-methylallyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000110_0002
A mixture of tert-butyl (l-((3-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl)- sulfonyl)piperidin-4-yl)carbamate (3.3 g, 7.1 mmol, 1.0 eq.), 3-bromo-2-methylprop-l-ene (1.91 g, 14.2 mmol, 2.0 eq.), Pd(PPh3)2Ch (497 mg, 0.7 mmol, 0.1 eq.) and ISfeCCE (2.25 g, 21.2 mmol, 3.0 eq.) in THF (30 mL) and H2O (3 mL) was stirred for 4 h at 65 °C under nitrogen atmosphere. The resulting mixture was diluted with water and extracted with DCM. The combined organic layers were washed with water and brine and dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure and the residue was purified by silica gel column chromatography, eluted with EtOAc/PE (0-30%) to afford the title compound as a yellow solid. Step 2: tert-Butyl (l-((3-((2-methyloxiran-2-yl)methyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000110_0003
To a stirred solution of tert-butyl (l-((3-(2-methylallyl)phenyl)sulfonyl)piperidin-4- yl)carbamate (810 mg, 2.1 mmol, 1.0 eq.) in DCM (10 mL) was added m-CPBA (834 mg, 4.1 mmol, 2.0 eq., 85%) in portions at 0 °C. The resulting mixture was stirred for 4 h at rt. The reaction was quenched with aq NaHCOs at 0 °C, and the resulting mixture was extracted with EtOAc. The combined organic layers were washed with water and brine and dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluted with EtOAc/PE (0-100%) to afford the title compound as a light yellow solid.
Step 3: tert-Butyl (l-((3-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol- 6-yl)piperidin-l-yl)-2-hydroxy-2-methylpropyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000111_0001
To a stirred solution of tert-butyl (l-((3-((2-methyloxiran-2-yl)methyl)phenyl)sulfonyl)- piperidin-4-yl)carbamate (650 mg, 1.6 mmol, 1.0 eq.) and l-(l-methyl-6-(piperidin-4-yl)-lH- indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride (634 mg, 1.76 mmol, 1.1 eq.) in EtOH (6 mL) was added TEA (240 mg, 2.4 mmol, 1.5 eq.) and the mixture was stirred for 24 h at 80 °C. The mixture was diluted with water and extracted with EtOAc. The combined organic layers were washed with water and brine, and the organic layer was dried over anhydrous ISfeSC After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by trituration with EtOAc/PE (1 :3) to afford the title compound as a white solid.
Step 4 : 1 -(6-(l -(3 -(3 -((4- Aminopiperidin- 1 -yl)sulfonyl)phenyl)-2-hydroxy-2-methylpropyl)- piperidin-4-yl)-l-methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
Figure imgf000111_0002
To a stirred solution of tert-butyl (l-((3-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)- l-methyl-lH-indazol-6-yl)piperidin-l-yl)-2-hydroxy-2-methylpropyl)phenyl)sulfonyl)piperidin-4- yl)carbamate (700 mg, 1 mmol, 1.0 eq.) in DCM (3 mL) was added 4 M HC1 in 1,4-dioxane (3 mL) dropwise, and the mixture was stirred for 2 h. The resulting mixture was concentrated under vacuum to afford the title compound as a light yellow solid. Reference 21
Synthesis of l-(6-(l-(3-(4-((4-aminopiperidin-l-yl)sulfonyl)phenyl)-2-methylpropyl)piperidin-4- yl)-l-methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride
Figure imgf000112_0001
Step 1 : tert-Butyl (l-((4-bromophenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000112_0002
To a stirred solution of 4-bromobenzenesulfonyl chloride (10.0 g, 39.14 mmol, 1.00 eq.) in DCM (20.0 mL) was added tert-butyl piperidin-4-ylcarbamate (9.41 g, 46.96 mmol, 1.20 eq.) and TEA (7.92 g, 78.27 mmol, 2.00 eq.) at 0 °C, and the mixture was stirred at rt for 2h. The mixture was diluted with water and extracted with DCM. The combined organic layers were washed with water, brine, and the organic layer was dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure and the residue was purified by silica gel column chromatography, eluting with PE: EtOAc=4: 1, to afford the title compound as a white solid. Step 2: tert-Butyl (l-((4-(2-methyl-3-oxopropyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000112_0003
A mixture of tert-butyl (l-((4-bromophenyl)sulfonyl)piperidin-4-yl)carbamate (500 mg, 1.20 mmol, 1.00 eq.), NaHCCh (201 mg, 2.39 mmol, 2.00 eq.), tetrabutylammonium bromide (77.1 mg, 0.239 mmol, 0.2 eq.), 2-methylprop-2-en-l-ol (172.4 mg, 2.39 mmol, 2.00 eq.), and Pd(OAc)2 (6 mg, 0.0239 mmol, 0.02 eq.) in DMF (10.0 mL) was stirred at 100 °C for 12 h under N2. The mixture was poured into water, extracted with EtOAc. The combined organic layer was washed with water and brine, dried over Na2SO4. After filtration, the filtrate was concentrated and the residue was purified by flash chromatography to give the title compound as a white solid.
- I l l - Step 3: tert-Butyl (l-((4-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-
6-yl)piperidin-l-yl)-2-methylpropyl)phenyl)sulfonyl)piperidin-4-yl)carbamate
Figure imgf000113_0001
To a stirred solution of tert-butyl (l-((4-(2-methyl-3-oxopropyl)phenyl)sulfonyl)piperidin- 4-yl)carbamate (150 mg, 0.366 mmol, 1.00 eq.), l-(l-methyl-6-(piperidin-4-yl)-lH-indazol-3- yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride (133 mg, 0.366 mmol, 1.00 eq.) and TEA (110.9 mg, 1.1 mmol, 3.00 eq.) in DMA (2.0 ml) was added NaBH(OAc)3 (187.7 mg, 0.886 mmol, 2.5 eq.) at 0 °C and the mixture was stirred at 0 °C for 2 h. The mixture was poured into water and extracted with EtOAc. The combined organic layer was washed with water and brine, and dried over Na2SO4. After filtration, the filtrate was concentrated and the residue was purified by flash chromatography to give the title compound as white solid.
Step 4 : 1 -(6-(l -(3 -(4-((4- Aminopiperidin- 1 -yl)sulfonyl)phenyl)-2-methylpropyl)piperidin-4-yl)- 1 - methyl- lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-di one hydrochloride
Figure imgf000113_0002
HC1 in EtOAc (2 M, 2.0 mL) was added to tert-butyl (l-((4-(3-(4-(3-(2,4-dioxotetrahydro- pyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)piperidin-l-yl)-2-methylpropyl)phenyl)sulfonyl)- piperidin-4-yl)carbamate (110 mg, 0.15 mmol, 1.00 eq.) and the mixture was stirred at rt for 2h. The mixture was concentrated under reduced pressure to give the title compound as brown oil.
Reference 22
Synthesis of 6-(ethoxymethyl)-8-methyl-2-(methylsulfonyl)pyrido[2,3-d]pyrimidin-7(8H)-one
Figure imgf000113_0003
Step 1 : 6-(Ethoxymethyl)-8-methyl-2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one
Figure imgf000114_0001
To a stirred mixture of 4-(methylamino)-2-(methylthio)pyrimidine-5-carbaldehyde (500 mg, 2.73 mmol, 1.00 eq.) in THF(5.0 mL) was added methyl 3-ethoxypropanoate (721 mg, 5.46 mmol, 2.00 eq.) at -75 °C and the resulting mixture was stirred for 15 min. IM LiHMDS in THF (8.19 mL, 8.19 mmol, 3.00 eq.) was added to the mixture at -75 °C and the mixture was allowed to warm to rt and stirred for 4 h. The mixture was diluted with water and extracted with EtOAc. The combined organic layers were washed with water, brine, and the organic layer was dried over anhydrous ISfeSC After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluting with EtOAc:PE (0 to 100%), to afford the title compound as a white solid.
Step 2: 6-(Ethoxymethyl)-8-methyl-2-(methylsulfonyl)pyrido[2,3-d]pyrimidin-7(8H)-one
Figure imgf000114_0002
To a stirred solution of 6-(ethoxymethyl)-8-methyl-2-(methylthio)pyrido[2,3-d]pyrimidin- 7(8H)-one (100 mg, 0.38 mmol, 1.00 eq.) in DCM (3.0 mL) was added m-CPBA (123 mg, 0.61 mmol, 1.60 eq.) at 25 °C and the resulting mixture was stirred for 3 h. The mixture was diluted with water and extracted with DCM. The combined organic layers were washed with NH4CI (aq.), brine, and dried over anhydrous Na2SO4. It was filtered and the filtrate was concentrated to give the title compound as white solid.
The following reference compounds were synthesized by proceeding analogously as described in reference 22.
Figure imgf000114_0003
Reference 23
Synthesis of 6-(ethoxymethyl)-2-(methylsulfonyl)-8-(2,2,2-trifluoroethyl)pyrido[2,3-d]pyrimidin- 7(8H)-one
Figure imgf000115_0001
Step 1 : 6-(Ethoxymethyl)-2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one
Figure imgf000115_0002
To a stirred solution of 4-amino-2-(methylthio)pyrimidine-5-carbaldehyde (1.00 g, 5.92 mmol, 1.00 eq.) in THF (10.0 mL) was added methyl 3-ethoxypropanoate (1.73 g, 11.84 mmol, 2.00 eq.) at -78°C, then IM LiHMDS in THF (17.75 mL, 17.75 mmol, 3.00 eq.) was added to the mixture dropwise at -78°C. The mixture was allowed to warm to rt and stirred for 3h. The mixture was diluted with water and extracted with EtOAc. The combined organic layers was washed with water, brine, and the organic layer was dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluting with (PE:EtOAc=3: l), to afford the title compound as a white solid. Step 2: 6-(Ethoxymethyl)-2-(methylthio)-8-(2,2,2-trifluoroethyl)pyrido[2,3-d]pyrimidin-7(8H)- one
Figure imgf000115_0003
To a stirred mixture of 6-(ethoxymethyl)-2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one (250 mg, 1.00 mmol, 1.00 eq.) in DMF (5.0 mL) was added l,l,l-trifluoro-2-iodoethane (314 mg,
1.50 mmol, 1.50 eq.) and CS2CO3 (647 mg, 2.00 mmol, 2.00 eq.) and the resulting mixture was stirred at 70 °C for 16 h. The mixture was diluted with water and extracted with EtOAc. The combined organic layers was washed with water, brine, and the organic layer was dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluting with EtOAc:PE (0 to 100%), to afford the title compound as a white solid. Step 3 : 6-(Ethoxymethyl)-2-(methylsulfonyl)-8-(2,2,2-trifluoroethyl)pyrido[2,3-d]pyrimidin- 7(8H)-one
Figure imgf000116_0001
To a stirred solution of 6-(ethoxymethyl)-2-(methylthio)-8-(2,2,2- trifluoroethyl)pyrido[2,3-d]pyrimidin-7(8H)-one (224 mg, 0.67 mmol, 1.00 eq.) in DCM (2.0 mL) was added m-CPBA (218 mg, 1.08 mmol, 1.60 eq.) at 0 °C and the mixture was stirred for 3 h at rt. The mixture was diluted with water and extracted with DCM. The combined organic layers was washed with water, brine, and the organic layer was dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluting with (DCM:MeOH=30: l), to afford the title compound as a white solid.
Reference 24
Synthesis of 6-((difluoromethoxy)methyl)-8-methyl-2-(methylsulfonyl)pyrido[2,3-d]pyrimidin-
7(8H)-one
Figure imgf000116_0002
Step 1 : 6-(Hydroxymethyl)-8-methyl-2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one
Figure imgf000116_0003
To a stirred solution of ethyl 3-hydroxypropanoate (200 mg, 1.69 mmol, 2.00 eq.) in THF (5.0 mL) was added IM LiHMDS in THF (2.54 mL, 2.54 mmol, 3.00 eq.) dropwise at -78°C. After 30 min at -78 °C, 4-(methylamino)-2-(methylthio)pyrimidine-5-carbaldehyde (155 mg, 0.85 mmol, 1.00 eq.) in THF (1.0 mL) was added dropwise at -78°C. The resulting mixture was stirred for 12 h at rt. The mixture was diluted with water and extracted with EtOAc. The combined organic layers was washed with water, brine, and the organic layer was dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluting with (PE:EtOAc=3: l), to afford the title compound as a white solid. Step 2: 6-((Difluoromethoxy)methyl)-8-methyl-2-(methylthio)pyrido[2,3-d]pyrimidin-7(8H)-one
Figure imgf000117_0001
To a stirred solution of 6-(hydroxymethyl)-8-methyl-2-(methylthio)pyrido[2,3- d]pyrimidin-7(8H)-one (200 mg, 0.48 mmol, 1.00 eq.) in MeCN (2.0 mL) was added 2,2-difluoro- 2-(fluorosulfonyl)acetic acid (299 mg, 1.68 mmol, 2.00 eq.), Cui (32 mg, 0.03 mmol, 0.02 eq.), 2- (di-tert-butylphosphaneyl)-l -phenyl- IH-indole (27 mg, 0.17 mmol, 0.20 eq.), and the resulting mixture was stirred for 12 h at 50 °C under N2. The mixture was diluted with water and extracted with EtOAc. The combined organic layers was washed with water, brine, and the organic layer was dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluting with (PE:EtOAc= 3 : 1), to afford the title compound as a yellow solid.
Step 3 : 6-((Difluoromethoxy)methyl)-8-methyl-2-(methylsulfonyl)pyrido[2,3-d]pyrimidin-7(8H)- one
Figure imgf000117_0002
To a stirred solution of 6-((difluorom ethoxy )methyl)-8-methyl-2-(methylthio)pyrido[2, 3- d]pyrimidin-7(8H)-one (90 mg, 0.31 mmol, 1.00 eq.) in DCM (2.0 mL) was added m-CPBA (127 mg, 0.63 mmol, 2.00 eq.) at 0 °C and the mixture was stirred for 16 h at rt. The mixture was diluted with water and extracted with DCM. The combined organic layers was washed with water, brine, and the organic layer was dried over anhydrous ISfeSC After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography, eluting with (PE:EtOAc= 3 : 1), to afford the title compound as a yellow solid. Example 1
Synthesis of l-(6-(l-(3-(3-((4-((6-(ethoxymethyl)-8-methyl-7-oxo-7,8-dihydropyrido[2,3- d]pyrimidin-2-yl)amino)piperidin-l-yl)sulfonyl)phenyl)-2-methylpropyl)piperidin-4-yl)-l -methyl- lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione
Figure imgf000118_0001
Step 1 : l-(6-(l-(3-(3-((4-((6-(Ethoxymethyl)-8-methyl-7-oxo-7,8-dihydropyrido[2,3-d]pyrimidin-
2-yl)amino)piperidin- 1 -yl)sulfonyl)phenyl)-2-methylpropyl)piperidin-4-yl)- 1 -methyl- IH-indazol-
3-yl)dihydropyrimidine-2,4(lH,3H)-dione
Figure imgf000118_0002
To a solution of l-(6-(l-(3-(3-((4-aminopiperidin-l-yl)sulfonyl)phenyl)-2- methylpropyl)piperidin-4-yl)-l-methyl-lH-indazol-3-yl)dihydropyrimidine-2,4(lH,3H)-dione hydrochloride (100 mg, 0.16 mmol, 0.70 eq.) in DMSO (2.0 mL) was added DIEA (89 mg, 0.69 mmol, 3.00 eq.) and 6-(ethoxymethyl)-8-methyl-2-(methylsulfonyl)pyrido[2,3-d]pyrimidin-7(8H)- one (60 mg, 0.23 mmol, 1.00 eq.). The mixture was stirred at 65 °C under N2 for 16 h. The mixture was quenched with water and extracted with EtOAc. The combined organic layers was washed with brine and the organic layer was dried over anhydrous ISfeSC The organic layer was concentrated and the residue was purified by prep-TLC (DCM:MeOH = 14 : 1) to give the title compound as light brown solid. MS (ES, m/z): [M+l]+ = 839.4.
The following compound was synthesized by proceeding analogously as described in Example 1.
Figure imgf000118_0003
Example 3 Synthesis of 2-(3-(4-(3-(2,4-dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6- yl)piperidin-l-yl)-2-methylpropyl)-4-((4-((6-(ethoxymethyl)-7-oxo-8-(2,2,2-trifluoroethyl)-7,8- dihydropyrido[2,3-d]pyrimidin-2-yl)amino)piperidin-l-yl)sulfonyl)benzonitrile
Figure imgf000119_0001
Step 1 : 2-(3-(4-(3-(2,4-Dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)piperidin- l-yl)-2-methylpropyl)-4-((4-((6-(ethoxymethyl)-7-oxo-8-(2,2,2-trifluoroethyl)-7,8- dihydropyrido[2,3-d]pyrimidin-2-yl)amino)piperidin-l-yl)sulfonyl)benzonitrile
Figure imgf000119_0002
To a stirred solution of 4-((4-aminopiperidin-l-yl)sulfonyl)-2-(3-(4-(3-(2,4- dioxotetrahydropyrimidin-l(2H)-yl)-l-methyl-lH-indazol-6-yl)piperidin-l-yl)-2- methylpropyl)benzonitrile hydrochloride (130 mg, 0.20 mmol, 1.00 eq.) in DMSO (3.0 mL) was added 6-(ethoxymethyl)-2-(methylsulfonyl)-8-(2,2,2-trifluoroethyl)pyrido[2,3-d]pyrimidin-7(8H)- one (110 mg, 0.30 mmol, 1.50 eq.) and DIEA (52 mg, 0.40 mmol, 2.00 eq.), and the resulting mixture was stirred for 12 h at 65 °C. The mixture was diluted with water and extracted with EtOAc. The combined organic layers was washed with water, brine, and the organic layer was dried over anhydrous Na2SO4. After filtration, the filtrate was concentrated under reduced pressure. The residue was purified by prep-HPLC to afford the title compound as white solid. MS (ES, m/z): [M+l]+ = 932.3. The following compounds were synthesized by proceeding analogously as described in Example 3.
Figure imgf000120_0001
Biological Examples Biological Example 1
Phospho-Rb Measurement in Cells
Phosphorylation of RB protein at S807/811 were measured using HTRF phospho-RB cellular kits (Cat# 64RBS807PEG) from Cisbio/ Revvity.
On Day 1, adherent cells, such as 0VCAR3 (CDK2-dependent cell line) and T47D (CDK4-dependent) were seeded into 96-well tissue-culture treated plates at 20,000 cells/well in 200 pL media and incubated overnight at 37 °C in CO2 atmosphere. On Day 2, the cells were treated with test compounds at concentrations from 0.3 to 3,000 nM using Tecan D300e digital dispenser (HP Inc., CA, USA). For suspension cells like THP1, cells were seeded into sterile 384- well plates at 12,000 cells/well in 30 pL media and treated with compounds immediately after plating. Twenty-four hours after compound treatment, cell culture media of the adherent cells is removed by flicking the plate and tapping the plate against clean paper towel. 30 pL IX lysis buffer was supplemented from the kit was added to each well of adherent cells. For THP1 cells, 10 pL 4X lysis buffer was added to 30 pL cells in 384-well plates. The plates were then incubated at room temperature on shaker for 30 min. After homogenization by pipetting up and down, 8 pL cell lysate from cell culture plate was transferred to 384-well small volume white detection plate. 2 pL premixed detection solution was added and the plate was covered with sealer. To prepare the detection solution, d2 conjugated-phospho-RB antibody and Eu-cryptate conjugated phosphor-RB antibody were diluted into detection buffer following manufacturer’s instruction. Detection plates were incubated for 4 h at room temperature and read on ClarioStar (BMG Labtech) in TR-FRET mode (665 nM and 620 nM). The TR-FRET ratio (665 nM/620 nM) was plotted against the compound concentration and normalized to DMSO controls. Half maximal inhibition concentration (IC50) values were calculated with a four-parameter logistic fit using GraphPad Prism (version 9; La Jolla, CA).
In the table below, AA indicates a IC50 of less than 1 nM; A indicates a IC50 of greater than or equal to 1 nM but less than or equal to 20 nM; B indicates a IC50 of greater than 20 nM but less than or equal to 100 nM; C indicates a IC50 of greater than 100 nM but less than or equal to 2.5 pM; D indicates a IC50 of greater than 2.5 pM but less than or equal to 5 pM, and E indicates a IC50 of greater than 5 pM.
Figure imgf000121_0001
Biological Example 2
High-throughput Measurement of Cellular Endogenous CDK1/2/4/6
Effects of compounds on cellular CDK levels were monitored by a high-throughput HTRF assay.
To determine half maximal degradation concentration (DC50) and maximum degradation level (Dmax) values of compounds, cellular CDK level was measured in 96-well format using HTRF total CDK cellular kit (CDK1, Cat# 64CDK1TPEG; CDK2 Cat# 64CDK2TPEG; CDK4 Cat# 64CDK4TPEG; CDK6, Cat# 64CDK6TPEG) from Cisbio/Revvity.
On Day 1, adherent cells were seeded into 96-well tissue-culture treated plates at 20,000 cells/well in 200 pL media and incubated overnight at 37°C in CO2 atmosphere. On Day 2 cells were treated with compounds at concentration ranging from 0.1 to 1,000 nM using Tecan D300e digital dispenser (HP Inc., CA, USA). 6 or 24 hours after compound treatment, cell culture media was removed by flicking the plate and tapping the plate against clean paper towel. Immediately 30 pL IX lysis buffer was supplemented from the kit and added to each well and the plate is incubated at room temperature on shaker for 30 min. After homogenization by pipetting up and down, 8 pL cell lysate from 96-well cell culture plate was transferred to 384-well small volume white detection plate. 2 pL premixed detection solution was added and the plate is covered with sealer. To prepare the detection solution, d2 conjugated-CDK antibody and Eu-cryptate conjugated CDK antibody were diluted into detection buffer following manufacturer’s instruction. Detection plates were incubated overnight at room temperature and read on ClarioStar (BMG Labtech) in TR-FRET mode (665 nM and 620 nM). The TR-FRET ratio (665 nM/620 nM) was normalized to DMSO controls (100% CDK) and lysis buffer controls (0% CDK) to calculate the relative CDK level (%CDK relative to DMSO), which was then plotted against the compound concentration. Half maximal degradation concentration (DCso) and maximal degradation (Dmax) values were calculated with a four-parameter logistic fit using GraphPad Prism (version 9; La Jolla, CA).
Formulation Examples The following are representative pharmaceutical formulations containing a compound of the present disclosure.
Tablet Formulation
The following ingredients are mixed intimately and pressed into single scored tablets.
Ingredient Quantity per tablet (mg) compound Formula (I) 400 cornstarch 50 croscarmellose sodium 25 lactose 120 magnesium stearate 5
Capsule Formulation
The following ingredients are mixed intimately and loaded into a hard-shell gelatin capsule.
Ingredient Quantity per capsule (mg)
Compound Formula (I) 200 lactose spray dried 148 magnesium stearate 2 Injectable Formulation
Compound of Formula (I) in 2% HPMC, 1% Tween 80 in DI water, pH 2.2 with MSA, q.s. to at least 20 mg/mL
Inhalation Composition
To prepare a pharmaceutical composition for inhalation delivery, 20 mg of a compound of Formula (I) is mixed with 50 mg of anhydrous citric acid and 100 mL of 0.9% sodium chloride solution. The mixture is incorporated into an inhalation delivery unit, such as a nebulizer, which is suitable for inhalation administration.
Topical Gel Composition
To prepare a pharmaceutical topical gel composition, 100 mg of a compound of Formula (I) is mixed with 1.75 g of hydroxypropyl cellulose, 10 mL of propylene glycol, 10 mL of isopropyl myristate and 100 mL of purified alcohol USP. The resulting gel mixture is then incorporated into containers, such as tubes, which are suitable for topical administration.
Ophthalmic Solution Composition
To prepare a pharmaceutical ophthalmic solution composition, 100 mg of a compound of Formula (I) is mixed with 0.9 g of NaCl in 100 mL of purified water and filtered using a 0.2 micron filter. The resulting isotonic solution is then incorporated into ophthalmic delivery units, such as eye drop containers, which are suitable for ophthalmic administration.
Nasal spray solution
To prepare a pharmaceutical nasal spray solution, 10 g of a compound of Formula (I) is mixed with 30 mL of a 0.05M phosphate buffer solution (pH 4.4). The solution is placed in a nasal administrator designed to deliver 100 pL of spray for each application.

Claims

What is Claimed:
1. A compound of Formula (I):
Figure imgf000124_0001
wherein:
R1 is hydrogen, linear alkyl, deuterated alkyl, haloalkyl, hydroxyalkyl, alkoxyalkyl, cyanoalkyl, cycloalkylalkyl, arylalkyl, heteroarylalkyl, or heterocyclylalkyl;
R2 is hydroxyalkyl, alkoxyalkyl, or haloalkoxyalkyl, provided that when R2 is hydroxyalkyl, then R1 is haloalkyl;
R2a is hydrogen or deuterium;
Hy is cycloalkylene, arylene, heteroarylene, heterocyclylene, bicyclic heterocyclylene, spiro heterocyclylene, bridged heterocyclylene, or fused heterocyclylene, where each of the aforementioned rings is substituted with Ra, Rb, and Rc independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano;
Degron is an E3 ubiquitin ligase ligand selected from:
(a) a group of formula (i):
Figure imgf000124_0002
(b) a group of formula (ii):
Figure imgf000124_0003
Ya is CH or N;
Za is a bond, -CH2-, -NH-, -O-, or -NHC(O)- where NH of -NHC(O)- is attached to Ya; ring A is a group of formula (a) or (b):
Figure imgf000125_0001
where:
Raa, Rbb, Rcc, and Rdd are independently selected from hydrogen, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano;
R4 and R5 are independently hydrogen or alkyl; or R4 and R5 together with the carbon to which they are attached form >C=O;
M is -O- or -NR6-; and
R6 is hydrogen or alkyl; ring B is phenylene, cyclylaminylene, a 5- or 6-membered monocyclic heteroarylene, or a 9- or 10-membered fused bicyclic heteroarylene, wherein one to three ring atoms of each heteroarylene ring are heteroatoms independently selected from nitrogen, oxygen, or sulfur and further wherein the phenylene, cyclylaminylene, and each heteroarylene are independently substituted with Ree and Rff independently selected from hydrogen, alkyl, cycloalkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano; and
Z is -O-, -NR3- (where R3 is hydrogen or alkyl), cycloalkylene, phenylene, monocyclic heteroarylene, unsaturated heterocyclylene, heterocyclylene, bridged heterocyclylene, or spiro heterocyclylene and where each ring is substituted with Rd and Re independently selected from hydrogen, deuterium, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano; alk is C3 to Ce alkenylene substituted with Rf selected from hydrogen, fluoro, and cyano; C3 to Ce alkylene or C3 to Ce heteroalkylene wherein the C3 to Ce alkylene and C3 to Ce heteroalkylene are substituted with Rg, Rh, and R1 where Rg is hydrogen, deuterium or halo, Rh is hydrogen, deuterium, cycloalkyl, cycloalkyloxy, bridged cycloalkyl, halo, haloalkoxy, alkoxy, hydroxy, cyano, cyanoalkyl, cyanoalkyloxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, phenyl, heteroaryl, heterocyclyl, heterocyclyloxy, heterocyclylcarbonyl, or bridged heterocyclyl (where cycloalkyl, either by itself or as part of cycloalkyloxy, bridged cycloalkyl, phenyl, heteroaryl, heterocyclyl, either by itself or as part of heterocyclyloxy or heterocyclylcarbonyl, and bridged heterocyclyl are substituted with R7 and R8 independently selected from hydrogen, deuterium, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, hydroxy, alkyl carbonyl, alkyloxycarbonyl, amino, alkylamino, dialkylamino, and cyano); or when Rg and Rh are attached to the same carbon or to adjacent carbon atoms of the linear portion of the C3 to Ce alkylene or C3 to Ce heteroalkylene, Rg and Rh together with the carbon atom(s) to which they are attached can form cycloalkylene or heterocyclylene (where the cycloalkylene and heterocyclylene formed by Rg and Rh are substituted with R9 and R10 independently selected from hydrogen, deuterium, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, hydroxy, alkylcarbonyl, alkyloxycarbonyl, amino, alkylamino, dialkylamino, and cyano), and R1 is hydrogen or halo; and the linear portion of C3 to Ce alkenylene, C3 to Ce alkylene, and C3 to Ce heteroalkylene, attaching Ar and Z, contains at least three atoms;
Ar is phenylene, monocyclic heteroarylene, heterocyclylene, bridged heterocyclylene, or spiro heterocyclylene, where each of the aforementioned ring is substituted with R>, Rk, and Rm independently selected from hydrogen, deuterium, alkyl, alkoxy, halo, haloalkyl, haloalkoxy, and cyano; or a pharmaceutically acceptable salt thereof.
2. The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein R1 is hydrogen, linear alkyl, or deuterated linear alkyl.
3. The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein R1 is linear haloalkyl.
4. The compound of any one of claims 1 to 3, or a pharmaceutically acceptable salt thereof, wherein R1 is hydrogen, methyl, ethyl, propyl, methyl-ds, difluoromethyl, trifluoromethyl,
2.2-difluoroethyl, or 2,2,2-trifluoroethyl.
5. The compound of any one of claims 1 to 4, or a pharmaceutically acceptable salt thereof, wherein R2 is hydroxymethyl, hydroxyethyl, methoxymethyl, methoxyethyl, methoxypropyl, ethoxymethyl, ethoxyethyl, difluoromethoxymethyl, trifluoromethoxymethyl,
2.2-difluoroethoxymethyl, or 2,2,2-trifluoroethoxymethyl.
6. The compound of any one of claims 1 to 5, or a pharmaceutically acceptable salt thereof, wherein R2a is hydrogen.
7. The compound of any one of claims 1 to 6, or a pharmaceutically acceptable salt thereof, wherein Hy is heterocyclylene substituted with Ra, Rb, and Rc where Ra and Rb are independently selected from hydrogen, deuterium, alkyl, halo, haloalkyl, alkoxy, hydroxy, and cyano, and Rc is hydrogen.
8. The compound of any one of claims 1 to 7, or a pharmaceutically acceptable salt thereof, wherein the heterocyclylene of Hy is:
Figure imgf000127_0001
where the N atom of the piperidin-l,4-diyl ring is attached to -SO2-.
9. The compound of any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, wherein the Degron is an E3 ubiquitin ligase ligand of formula (i):
Figure imgf000127_0002
10. The compound of any one of claims 1 to 9, or a pharmaceutically acceptable salt thereof, wherein the ring A of the E3 ubiquitin ligase ligand of formula (i) is:
Figure imgf000127_0003
11. The compound of any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, wherein the Degron is an E3 ubiquitin ligase ligand of formula (ii):
Figure imgf000127_0004
12. The compound of any one of claims 1 to 8 and 11, or a pharmaceutically acceptable salt thereof, wherein the E3 ubiquitin ligase ligand of formula (ii) is:
Figure imgf000128_0001
where ring B is cyclylaminylene.
13. The compound of any one of claims 1 to 12, or a pharmaceutically acceptable salt thereof, wherein Ar is phenylene, monocyclic heteroarylene, bridged heterocyclylene, or heterocyclylene, where each ring of Ar is substituted with R>, Rk, and Rm where Rm is hydrogen.
14. The compound of any one of claims 1 to 13, or a pharmaceutically acceptable salt thereof, wherein -Ar- is phenylene of formula
Figure imgf000128_0002
substituted with R1,
Rk, and Rm where R1 and Rk are independently selected from hydrogen, alkyl, alkoxy, halo, cyano, haloalkyl, and haloalkoxy and Rm is hydrogen.
15. The compound of any one of claims 1 to 14, or a pharmaceutically acceptable salt thereof, wherein Z is heterocyclylene, bridged heterocyclylene, or spiro heterocyclylene, where each ring of Z is substituted with Rd and Re.
16. The compound of any one of claims 1 to 15, or a pharmaceutically acceptable salt thereof, wherein the heterocyclylene, bridged heterocyclylene, and spiro heterocyclylene of Z are selected from:
Figure imgf000129_0002
respectively, and wherein each of the above rings is substituted with Rd and Re independently selected from hydrogen, deuterium, alkyl, and halo.
17. The compound of any one of claims 1 to 16, or a pharmaceutically acceptable salt thereof, wherein -Z-alk-Ar-SCh- is:
Figure imgf000129_0001
wherein each Rd, Re, and Rk are independently selected from hydrogen, alkyl, halo, haloalkyl, haloalkoxy, alkoxy, and cyano and R> is hydrogen.
18. The compound of any one of claims 1 to 17, or a pharmaceutically acceptable salt thereof, wherein alk is C3 to Ce alkenylene substituted with Rf where Rf is hydrogen.
19. The compound of any one of claims 1 to 17, or a pharmaceutically acceptable salt thereof, wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rg, Rh, and R1 are hydrogen.
20. The compound of any one of claims 1 to 17, or a pharmaceutically acceptable salt thereof, wherein alk is C3 to Ce alkylene substituted with Rg, Rh, and R1 where Rh is other than hydrogen and R1 is hydrogen.
21. The compound of any one of claims 1 to 20, or a pharmaceutically acceptable salt thereof, wherein the C3 to Ce alkenylene and C3 to Ce alkylene of alk are linear C3 to Ce alkenylene and linear C3 to Ce alkylene, respectively, where alk is substituted with Rg, Rh, and R1.
22. The compound of any one of claims 1 to 21, or a pharmaceutically acceptable salt thereof, wherein the linear C3 to Ce alkenylene of alk is -CH=C(Rf)CH2- and the linear C3 to Ce alkylene of alk is -CH2CH(Rh)CH2-, -CH2CH2CH(Rh)-, -CH2C(Rg)(Rh)CH2-, -CH2CH2C(Rg)(Rh)- where Rh is other than hydrogen and R1 is hydrogen.
23. The compound of any one of claims 1 to 20, or a pharmaceutically acceptable salt thereof, wherein the C3 to Ce alkenylene and C3 to Ce alkylene of alk are branched C4 to Ce alkenylene and C4 to Ce alkylene, respectively.
24. The compound of any one of claims 1 to 20 and 23, or a pharmaceutically acceptable salt thereof, wherein the branched C4 to Ce alkenylene of alk is -CH2CH2C(CH3)=C(Rf)-, -CH2C(CH3)=C(Rf)-, or -CH2C(=CH2)CH2- and the branched C4 to C6 alkylene of alk is -CH2C(CH3)(Rh)CH2-, -CH2C(C2H5)(Rh)CH2-,
-CH2CH(CH2Rh)CH2-, -CH2CH(CH2CH2Rh)CH2-, -CH2C(CH3)(CH2Rh)CH2-, -CH2C(C2H5)(CH2Rh)CH2-, -CH2C(CH3)(CH2CH2Rh)CH2-, -CH2CH(CH3)CH(CH2Rh)-, -CH2CH2C(CH3)(CH2Rh)-, -CH2CH(CH3)C(Rg)(Rh)-, -CH2CH(C2H5)C(Rg)(Rh)-, -CH2CH(C(Rg)(Rh)(Ri))CH(CH3)-, -CH2C(CH3)(C(Rg)(Rh)(Ri))CH(CH3)-, -CH2CH(C(Rg)(Rh)(Ri))CH2-, -CH2CH2CH(C(Rg)(Rh)(Ri))-, -CH2CH2CH(C(Rg)(Rh)(Ri))CH2-, or -CH2CH2CH2CH(C(Rg)(Rh)(Ri))-.
25. The compound of any one of claims 1 to 20, 23, and 24, or a pharmaceutically acceptable salt thereof, wherein Rg and R1 of branched C4 to Ce alkylene of alk are (unless stated otherwise) hydrogen, deuterium, or fluoro and Rh of branched C4 to Ce alkylene of alk, unless stated otherwise, is hydrogen, deuterium, fluoro, cyclopropyl, cyclobutyl, cyclopropyloxy, cyclobutyloxy, difluoromethoxy, trifluoromethoxy, methoxy, ethoxy, hydroxy, cyano, aminocarbonyl, methylaminocarbonyl, dimethylaminocarbonyl, diethylaminocarbonyl, methylcarbonylamino, ethylcarbonylamino, phenyl, pyrazolyl, thiazolyl, furanyl, pyridinyl, pyrrolidinyl, 2-oxopyrrolidinyl, piperidinyl, piperazinyl, or tetrahydrofuranyl, where each ring of Rh is substituted with R7 and R8 independently selected from hydrogen, deuterium, methyl, methoxy, fluoro, difluoromethyl, trifluoromethyl, difluoromethoxy, trifluoromethyl, hydroxy, amino, methylamino, dimethylamino and cyano, unless stated otherwise.
26. The compound of any one of claims 1 to 17, or a pharmaceutically acceptable salt thereof, wherein the alk is C3 to Ce heteroalkylene substituted with Rg, Rh, and R1.
27. The compound of any one of claims 1 to 17 and 26, or a pharmaceutically acceptable salt thereof, wherein the C3 to Ce heteroalkylene of alk is linear C3 to Ce heteroalkylene.
28. The compound of any one of claims 1 to 17, 26, and 27, or a pharmaceutically acceptable salt thereof, wherein the linear C3 to Ce heteroalkylene of alk is -CH2CH2XaCH2-, -CH2XaCH2CH2-, -CH2CH2CH2Xa-, -XaCH2CH2CH2-, -XyCH2CH2Xa-, -XyCH2CH2XaCH2-, -CH2CH2CH2XaCH2-, -CH2XaCH2-, -XaCH2CH2-, -CH2CH2Xa-, -CH2CONRqCH2-, -CH2SO2NRqCH2-, -CH2NRqCOCH2-, -CH2NRqSO2CH2-, -CH2CH2CH2NRqCO-, -CH2CONRq-, -CH2SO2NR -CH2NRqCO-, -CH2NRqSO2-, -CONRqCH2-, -SO2NRqCH2-, -NRqCOCH2-, or -NRqSO2CH2 substituted with Rg, Rh, and R1 and Xa is -NRq-, -O-, -S-, -SO-, -SO2-, or -CO-.
29. The compound of any one of claims 1 to 17 and 26, or a pharmaceutically acceptable salt thereof, wherein the C3 to Ce heteroalkylene of alk is branched C4 to Ce heteroalkylene.
30. The compound of any one of claims 1 to 17, 26, and 29, or a pharmaceutically acceptable salt thereof, wherein the branched C4 to Ce heteroalkylene of alk is -CH2XaCH(CH3)CH2-, -CH2XyCH2CH(CH3)Xa-, -CH2CH2CH(CH3)Xa-, -XaCH(CH3)CH2CH2-, -XyCH2CH(CH3)Xa-, -XyCH(CH3)CH2Xa-, -CH2CH2CH2CH(CH3)Xa-, -XaCH(CH2Rh)CH2-, -CH2CH(CH2Rh)Xa-, -XaCH(CH2CH2Rh)CH2-, -CH2CH(CH2CH2Rh)Xa-, -CH2C(CH3)(CH3)Xa-, -XaC(CH3)(CH3)CH2-, -CH(CH3)CH(CH3)Xa-, -CONRzCH2CH(CH3)Xa-, -CH2NRqCOCH(CH3)CH2-, or -NRqCOCH(CH3)CH2- where Xa is -NRq-, -O-, -S-, -SO-, -SO2-, or -CO-.
31. The compound of any one of claims 1 to 17, 26, 29, and 30, or a pharmaceutically acceptable salt thereof, wherein the Rg and R1 of branched C4 to Ce heteroalkylene of alk are hydrogen or halo (unless stated otherwise) and Rh of branched C4 to Ce heteroalkylene of alk is hydrogen, halo, haloalkoxy, cycloalkyl, cycloalkyloxy, alkoxy, hydroxy, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylcarbonylamino, cyano, cyanoalkyloxy, phenyl, heteroaryl, heterocyclyl, heterocyclyloxy, heterocyclylcarbonyl, or bridged heterocyclyl where each ring of Rh is substituted with R7 and R8.
32. The compound of any one of claims 1 to 31, or a pharmaceutically acceptable salt thereof, wherein alk is:
Figure imgf000132_0001
Figure imgf000133_0001
33. The compound of any one of claims 1 to 32, or a pharmaceutically acceptable salt thereof, wherein Degron is the E3 ubiquitin ligase ligand selected from:
Figure imgf000133_0002
Figure imgf000134_0001
where Ree is hydrogen, methyl, ethyl, cyclopropyl, or 2,2,2-trifluoroethyl and Rff is hydrogen, methyl, cyclopropyl, fluoro, cyano, methoxy, difluoromethoxy, trifluoromethoxy, or trifluoromethyl.
34. A pharmaceutical composition comprising a compound of any one of claims 1 to
33, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.
35. A method of treating cancer in a patient which method comprises administering to the patient in need thereof, a therapeutically effective amount a compound of any one of claims 1 to 33, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition of claim 34.
PCT/US2024/061180 2023-12-20 2024-12-19 Bifunctional compounds containing pyrido[2,3-d]pyrimidin-7(8h)-one derivatives for degrading cyclin-dependent kinase 4 via ubiquitin proteasome pathway Pending WO2025137391A1 (en)

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