WO2025168424A1 - Piperidinylpyridinylcarbonitrile derivatives as inhibitors of glutaminyl-peptide cyclotransferase and glutaminyl-peptide cyclotransferase like protein - Google Patents
Piperidinylpyridinylcarbonitrile derivatives as inhibitors of glutaminyl-peptide cyclotransferase and glutaminyl-peptide cyclotransferase like proteinInfo
- Publication number
- WO2025168424A1 WO2025168424A1 PCT/EP2025/052310 EP2025052310W WO2025168424A1 WO 2025168424 A1 WO2025168424 A1 WO 2025168424A1 EP 2025052310 W EP2025052310 W EP 2025052310W WO 2025168424 A1 WO2025168424 A1 WO 2025168424A1
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- Prior art keywords
- cancer
- compound
- compounds
- diseases
- glutaminyl
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D401/00—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom
- C07D401/14—Heterocyclic compounds containing two or more hetero rings, having nitrogen atoms as the only ring hetero atoms, at least one ring being a six-membered ring with only one nitrogen atom containing three or more hetero rings
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K45/00—Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
- A61K45/06—Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D413/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D413/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D417/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00
- C07D417/14—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and sulfur atoms as the only ring hetero atoms, not provided for by group C07D415/00 containing three or more hetero rings
Definitions
- the present disclosure provides certain piperidinylpyridinylcarbonitrile derivatives, and pharmaceutically acceptable salts thereof, that are inhibitors of Glutaminyl-peptide cy- clotransferase (QPCT) and glutaminyl-peptide cyclotransferase-like protein (QPCTL), and are therefore useful for the treatment of diseases treatable by inhibition of QPCT/L. Also provided are pharmaceutical compositions containing the same, and processes for preparing said compounds.
- Glutaminyl-peptide cyclotransferase and glutaminyl-peptide cyclotransferase-like protein (QPCTL) catalyze the intramolecular cyclization of N-terminal glutamine (Q) resi- dues into pyroglutamic acid (pE) liberating ammonia
- Q N-terminal glutamine
- pE pyroglutamic acid
- QPCT is a secreted protein
- QPCTL is retained within the Golgi complex.
- Both enzymes share a high homology in the active site and similar catalytic specificity. Because of the high homology in the active site, inhibition of the active site- blocks the enzymatic activity of both enzymes: QPCT and QPCTL.
- QPCT/L describes both enzymes at once. Due to their different cellular localisation, differences in their relevance for modification of biological substrates have been reported.
- Known substrates of the intracellular QPCTL and/or extracellular QPCT are CD47 [Meike E. W.
- CD47 is expressed on the cell surface of virtually all cells of the body, including apoptotic cells, senescent cells or cancer cells. [Meike E.W. Logtenberg, Ferenc A. Scheeren, and Ton N. Schumacher, “The CD47-SIRPa Immune Checkpoint,” Immunity 52, no. 5 (2020): 742-52, https://doi.Org/10.1016/j.immuni.2020.04.011].
- the main ligand for CD47 is signal-regula- tory protein alpha (SIRPa), an inhibitory transmembrane receptor present on myeloid cells, such as macrophages, monocytes, neutrophils, dendritic cells and others.
- SIRPa signal-regula- tory protein alpha
- QPCTL mediated N-terminal pyroglutamate modification on CD47 is required for SIRPa binding [Deborah Hatherley et al., “Paired Receptor Specificity Explained by Structures of Signal Regulatory Proteins Alone and Complexed with CD47,” Molecular Cell 31, no. 2 (2008): 266-77, https://doi.Org/10.1016/j.molcel.2008.05.026; Meike E. W.
- QPCT and QPCTL inhibition could be a suitable mechanism as a treatment in lung fibrosis such as IPF or SSC-ILD [Lerbs et al., “CD47 Prevents the Elimination of Diseased Fibroblasts in Scleroderma.”], alone or together with current standard of care in pulmonary fibrosis like Nintedanib [Luca Richeldi et al., “Effi- cacy and Safety of Nintedanib in Idiopathic Pulmonary Fibrosis,” The New England Journal of Medicine 370, no.
- cancer cells can evade destruction by the immune system or evade immune surveillance, e.g. by evading phagocytosis by immune cells [Stephen B. Willingham et al., “The CD47-Signal Regulatory Protein Alpha (SIRPa) Interaction Is a Therapeutic Target for Human Solid Tumors,” Proceedings of the National Academy of Sciences 109, no. 17 (2012): 6662-67, https://doi.org/10.1073/pnas.1121623109].
- SIRPa CD47-Signal Regulatory Protein Alpha
- chemokines such as CCL2 and CX3CL1
- QPCTL and/or QPCT substrates [Holger Cynis et al., “The Isoenzyme of Glutaminyl Cyclase Is an Important Regulator of Monocyte Infiltration under Inflammatory Condi- tions,” EMBO Molecular Medicine 3, no. 9 (2011): 545-58, https://doi.org/10.1002/emmm.201100158]
- the formation of the N-terminal pGlu was shown to increase in vivo activity, both by conferring resistance to aminopeptidases and by increasing its capacity to induce chemokine receptor signaling.
- WO 2023/205173 discloses QPCTL modulators of the general formula: which includes compound 14:
- Compound 14 in WO 2023/205173 is disclosed therein [00470] as having inhibitory activ- ity on isolated QPCTL of IC 50 ⁇ I ⁇ M and cellular activity in A549 cells of EC 50 ⁇ 1 ⁇ M. Yu, L., Zhao, P., Sun, Y. et al. Sig Transduct Target Ther 8, 454 (2023) (herein “STTT 2023”) disclose compounds QP5020 and QP5038 as potent benzonitrile-based inhibitors of glutaminyl-peptide cyclotransferase-like protein (QPCTL) with antitumor efficacy:
- Compound QP5020 is disclosed therein as having QPCTL inhibition activity of IC 50 15.0 +/- 5.5 nM and QP5038 as having QPCTL inhibition activity of IC 50 3.8 +/- 0.7 nM.
- WO 2024/020517 discloses inhibitors of general formula: which includes compound (1):
- Compound (1) in WO 2024/020517 is disclosed therein [00698] as having inhibitory activ- ity on isolated QPCTL of IC 50 ⁇ 0.1 ⁇ M and cellular activity in Ramos cells of IC 50 ⁇ 0.1 ⁇ M.
- Compound (1) in WO 2024/020517 and QP5020 are identical.
- the present invention discloses novel piperidinylpyridinylcarbonitrile derivatives of for- mula (I)
- QPCT Glutaminyl-peptide cyclotransferase
- QPCTL glutaminyl-peptide cyclotransferase-like protein
- the compounds of the present invention may provide several advantages, such as enhanced potency, cellular potency, high metabolic and/or chemical stability, high selectivity, safety and tolerability, enhanced solubility, enhanced permeability, desirable plasma protein bind- ing, enhanced bioavailability, suitable pharmacokinetic profiles, and the possibility to form stable salts.
- the present invention provides novel piperidinylpyridinylcarbonitrile derivatives that sur- prisingly, are potent inhibitors of QPCT and QPCTL (Assay A), as well as potent inhibi- tors of QPCT/L in cells relevant for, but not limited to, lung diseases or cancer, (Assay B). Furthermore, the present novel piperidinylpyridinylcarbonitrile derivatives have appropri- ate membrane permeability and a low in vitro efflux (Assay C).
- the compounds of the present invention have a favorable CYP induction pro- file as indicated by a low n-fold induction of CYP3 A4 mRNA after incubation with the compound at 10 ⁇ M concentration (Assay D).
- the compounds of the present invention show improved stability in murine hepatocytes that facilitates preclinical compound evaluation (Assay E).
- Compounds of the present invention bear a fluoro substituent attached to the 4-position of the piperidyl ring (noted herein below as “4-fluoropiperidyl” in the tables), which show surprisingly higher permeability in CACO2-Cells and reduced efflux, (Assay C). This ef- fect is demonstrated with the following comparisons with the analogous non-fluoro com- pound:
- Compounds of the present invention differ structurally from Compound 14 in WO 2023/205173 in that the triazolyl ring in the 4-position of the piperidyl ring does not contain an amino substituent. Furthermore, the 4-position of the piperidyl ring is further substituted with fluoro. Still furthermore, the ring attached to the 1 -position of the piperidyl ring is pyridyl, and said pyridyl ring has four substituents.
- Compounds of the present invention differ structurally from the compounds in WO 2024/020517 including QP5020/Compound (1) in that the 4-position of the piperidyl ring is substituted with fluoro in addition to the triazolyl ring. Furthermore, the pyridyl ring attached to the 1 -position of the piperidyl ring has four substituents, with one substituent at the para- position relative to the piperidyl ring. This differs to compounds disclosed in WO 2024/020517 which have three substituents or a fourth substituent at the meta-position rela- tive to the piperidyl ring, such as Compound 133, Compound 138 and Compound 139.
- the present invention provides novel compounds according to formula (I) wherein
- A is selected from the group consisting of
- R 1 is selected from the group consisting of or a salt thereof, particularly a pharmaceutically acceptable salt thereof.
- Another embodiment of the present invention relates to a compound of formula (I), wherein R 1 is H; and substituent A is defined as in any of the preceding embodiments.
- Another embodiment of the present invention relates to a compound of formula (I) above, having formula (I-a)
- substituent A is defined as in any of the preceding embodiments. Particularly preferred is the compound according to formula (I) selected from the group consisting of
- the compound according to formula (I) selected from the group consisting of example 1, example 2, example 3, example 4, example 5, example 6, example 7, example 8, example 9, example 10, example 11, example 12, example 13 and example 14 as described hereinafter in EXAMPLES.
- the compound according to formula (I) selected from the group consisting of example 1, example 5, example 6, example 11 and example 14 as described hereinafter in EXAMPLES.
- the present invention provides novel piperidinylpyridinylcarbonitrile derivatives of for- mula (I) that are surprisingly potent QPCT/L inhibitors.
- Another aspect of the invention refers to compounds according to formula (I) as surpris- ingly having potent inhibition of QPCT/L in cells relevant for, but not limited to, lung dis- eases or cancer.
- Another aspect of the invention refers to compounds according to formula (I) as surpris- ingly cellular potent QPCT/L inhibitors having appropriate membrane permeability and low in vitro efflux.
- compositions containing at least one compound according to formula (I) optionally together with one or more inert carriers and/or diluents.
- a further aspect of the present invention refers to compounds according to formula (I), for the use in the prevention and/or treatment of disorders associated with QPCT/L inhibition.
- Another aspect of the invention refers to processes of manufacture of the compounds of the present invention.
- Ci-6-alkyl means an alkyl group or radical hav- ing 1 to 6 carbon atoms.
- groups like HO, H 2 N, (O)S, (O) 2 S, NC (cyano), HOOC, F 3 C or the like the skilled artisan can see the radical attachment point(s) to the molecule from the free valences of the group itself.
- aryl-C 1-3 -alkylene means an aryl group which is bound to a C 1-3 -alkyl- group, the latter of which is bound to the core or to the group to which the substituent is at- tached.
- the numeration of the atoms of a substituent starts with the atom which is closest to the core or to the group to which the substituent is attached.
- 3 -carb oxy propyl -group represents the following substituent: wherein the carboxy group is attached to the third carbon atom of the propyl group.
- the terms "1 -methylpropyl-", “2,2-dimethylpropyl-” or “cyclopropylmethyl-” group represent the following groups:
- the asterisk may be used in sub-formulas to indicate the bond which is connected to the core molecule as defined.
- substituted means that one or more hydrogens on the designated atom are replaced by a group selected from a defined group of substituents, provided that the designated atom's normal valence is not exceeded, and that the substitution results in a stable compound.
- substituted may be used in connection with a chemical moiety instead of a single atom, e.g. “substituted alkyl”, “substituted aryl” or the like.
- a given chemical formula or name shall encompass tautomers and all stereo, optical and geo- metrical isomers (e.g. enantiomers, diastereomers, E/Z isomers etc%) and racemates thereof as well as mixtures in different proportions of the separate enantiomers, mixtures of diastereomers, or mixtures of any of the foregoing forms where such isomers and enantio- mers exist, as well as solvates thereof such as for instance hydrates.
- optical and geo- metrical isomers e.g. enantiomers, diastereomers, E/Z isomers etc.
- Enantiomerically pure compounds of this invention or intermediates may be prepared via asymmetric synthesis, for example by preparation and subsequent separation of appropriate diastereomeric compounds or intermediates which can be separated by known methods (e.g. by chromatographic separation or crystallization) and/or by using chiral reagents, such as chiral starting materials, chiral catalysts or chiral auxiliaries. Further, it is known to the person skilled in the art how to prepare enantiomerically pure compounds from the corresponding racemic mixtures, such as by chromatographic separa- tion of the corresponding racemic mixtures on chiral stationary phases; or by resolution of a racemic mixture using an appropriate resolving agent, e.g.
- phrases "pharmaceutically acceptable” is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings without excessive toxicity, irritation, allergic response, or other problem or complication, and commensurate with a reasonable benefit/risk ratio.
- pharmaceutically acceptable salt refers to derivatives of the disclosed compounds wherein the parent compound is modified by making acid or base salts thereof.
- pharmaceutically acceptable salts include, but are not limited to, mineral or organic acid salts of basic residues such as amines; alkali or organic salts of acidic residues such as carboxylic acids; and the like.
- such salts include salts from benzenesulfonic acid, benzoic acid, citric acid, ethanesulfonic acid, fumaric acid, gentisic acid, hydrobromic acid, hydrochloric acid, ma- leic acid, malic acid, malonic acid, mandelic acid, methanesulfonic acid, 4-methyl-ben- zenesulfonic acid, phosphoric acid, salicylic acid, succinic acid, sulfuric acid and tartaric acid.
- compositions can be formed with cations from ammonia, L-arginine, calcium, 2,2’-iminobisethanol, L-lysine, magnesium, A-methyl-D-glucamine , potassium, sodium and tris(hydroxymethyl)-aminomethane.
- the pharmaceutically acceptable salts of the present invention can be synthesized from the parent compound which contains a basic or acidic moiety by conventional chemical meth- ods.
- such salts can be prepared by reacting the free acid or base forms of these compounds with a sufficient amount of the appropriate base or acid in water or in an or- ganic diluent such as ether, ethyl acetate, ethanol, isopropanol, or acetonitrile, or a mixture thereof.
- an or- ganic diluent such as ether, ethyl acetate, ethanol, isopropanol, or acetonitrile, or a mixture thereof.
- Salts of other acids than those mentioned above which for example are useful for purifying or isolating the compounds of the present invention e.g. trifluoro acetate salts, also com- prise a part of the invention.
- n is an integer selected from 2, 3, 4, 5 or 6, preferably 4, 5, or 6, either alone or in combination with another radical, denotes an acyclic, saturated, branched or linear hydrocarbon radical with 1 to n C atoms.
- C 1-5 -al- kyl embraces the radicals H 3 C-, H 3 C-CH 2 -, H 3 C-CH 2 -CH 2 -, H 3 C-CH(CH 3 )-, H 3 C-CH 2 -CH 2 -CH 2 -, H 3 C-CH 2 -CH(CH 3 )-, H 3 C-CH(CH 3 )-CH 2 -, H 3 C-C(CH 3 )2-, H 3 C-CH 2 -CH 2 -CH 2 -CH 2 -, H 3 C-CH 2 -CH 2 -CH(CH 3 )-, H 3 C-CH 2 -CH(CH 3 )-CH 2 -, H 3 C-CH(CH 3 )-CH 2 -, H 3 C-CH(CH 3 )-CH 2 -CH 2 -, H 3 C-CH 2 -C(CH 3 )2-, H 3 C-C(CH 3 )2-CH 2 -, H 3 C-CH(C H 3
- C3-k-cycloalkyl wherein k is an integer selected from 3, 4, 5, 7 or 8, preferably 4, 5 or 6, either alone or in combination with another radical, denotes a cyclic, saturated, unbranched hydrocarbon radical with 3 to k C atoms.
- C 3-7 -cycloalkyl includes cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl and cycloheptyl.
- halo added to an "alkyl", “alkylene” or “cycloalkyl” group (saturated or unsatu- rated) defines an alkyl, alkylene or cycloalkyl group wherein one or more hydrogen atoms are replaced by a halogen atom selected from among fluorine, chlorine or bromine, prefer- ably fluorine and chlorine, particularly preferred is fluorine. Examples include: H2FC-, HF 2 C-, F 3 C-.
- mono-heteroaryl ring means a monocyclic aromatic ring system, containing one or more heteroatoms selected from N, O or S, consisting of 5 to 6 ring atoms.
- the term "mono-heteroaryl ring” includes the following exemplary structures (not de- picted as radicals as each form is optionally attached through a covalent bond to any atom so long as appropriate valences are maintained):
- fused bicyclic-heteroaryl ring means a bicyclic aromatic ring system, contain- ing one or more heteroatoms selected from N, O or S, consisting of 9 to 10 ring atoms.
- fused bicyclic-heteroaryl ring is intended to include all the possible isomeric forms.
- bicyclic-heteroaryl ring includes the following exemplary structures (not depicted as radicals as each form is optionally attached through a covalent bond to any atom so long as appropriate valences are maintained):
- phenyl refers to the radical of the following ring:
- pyridyl refers to the radical of the following ring:
- pyridazinyl refers to the radical of the following ring:
- pyrimidyl refers to the radical of the following ring:
- pyrazolyl refers to the radical of the following ring:
- thiazolyl refers to the radical of the following ring:
- oxazolyl refers to the radical of the following ring:
- the activity of the compounds of the invention may be demonstrated using the following biochemical enzyme activity assay:
- the plates were incubated for 10 min in a humidified incubator at 24°C. Subsequently, 2.5 pL of CD47 peptide substrate surro- gate ( 19 QLLFNKTKSVEFTFC 33 ) was added to each well (final concentration: 10 ⁇ M for QPCTL / 20 ⁇ M for QPCT). The plates were mixed for 30 sec at 1,000 rpm and subse- quently incubated for 40 min in a humidified incubator at 24°C.
- MALDI target plates were prepared as described previously.1 Mass spectra were acquired with a rapifleX MALDI-TOF/TOF instrument tracking the signals of the product ( 19 [Pyr]LLFNKTKSVEFTFC 33 , m/z 1,787.9037) as well as internal standard ( 19 [Pyr]LLFN(K)TKSVEFTFC 33 , m/z 1,795.9179) peptide. QPCT or QPCTL activity was monitored by calculating the ratio between product and internal standard signals followed by normalization to high (100% activity) and low (0% activity) controls. Determination of compound potencies was obtained by fitting the dose-response data to a four-parameter lo- gistical equation.
- Table 2 Biological data for compounds of the invention as obtained in Assay A.
- Table 3 Biological data for prior art compounds as obtained in Assay A.
- Assay B SIRPa signalling assay (using either Raji or A549 cells)
- the activity of the compounds of the invention may be demonstrated using the following SIRPa signalling assay that measures SIRPa engagement induced by CD47 presented via cell-cell interaction.
- SIRPa signalling assay measures SIRPa engagement induced by CD47 presented via cell-cell interaction.
- Two cell types are independently used: the Raji cell line (lymphoblast- like human cell line derived from B lymphocytes from a Burkitt’s lymphoma patient in 1963) and A549 cells (adenocarcinomic human alveolar basal epithelial cells).
- Test compounds were dissolved in 100 % DMSO and serially diluted into a white 384-well microtiter cell culture plate (PerkinElmer #60076780 in case of Raji assay; PDL-coated plates Greiner #781945 in case of A549 assay). 5000 Raji cells (ATCC #CC86) or 5000 A549 cells (ATCC #CCL-185) in Assay Complete Cell Plating reagent 30 (DiscoverX 93- 0563R30B) were added per well. The assay plate was incubated for 48 h at 37 °C, 95% humidity and 5 % CO2.
- Bioassay reagent 1 of the PathHunter Bioassay detection kit (Dis- coverX 93-0001) was added to each well of the plate using a multichannel pipette followed by a 15 min incubation at room temperature. Afterwards bioassay reagent 2 was added fol- lowed by 60 min incubation at room temperature (incubation in the dark).
- Caco-2 cells (1 - 2 x 10 5 cells/1 cm 2 area) are seeded on filter inserts (Costar transwell pol- ycarbonate or PET filters, 0.4 ⁇ m pore size) and cultured (DMEM) for 10 to 25 days.
- filter inserts Costar transwell pol- ycarbonate or PET filters, 0.4 ⁇ m pore size
- DMEM cultured
- the transport solution (TL) is applied to the apical or basolateral donor side for measuring A-B or B-A permeability (3 filter replicates), respectively. Samples are collected at the start and end of experiment from the donor and at various time intervals for up to 2 hours also from the receiver side for concentration measurement by HPLC-MS/MS or scintillation counting. Sampled receiver volumes are replaced with fresh receiver solution.
- Efflux ratio (ER) permeability B-A / permeability A-B
- Table 7 Biological data for compounds of the invention as obtained in Assay C.
- Table 8 Biological data for prior art compounds as obtained in Assay C.
- Assay D CYP induction screening assay in primary human hepatocytes
- Cryopreserved plateable human hepatocytes (single donor, BioIVT) were thawed and plated in Collagen-I coated 96-well-plates at a cell density of 0.07 million cells per well. After a 6h attachment period, the seeding medium was replaced by serum-free William’s medium E supplemented with Matrigel (0.25 mg/ml) and allowed to recover overnight. 24h post-seeding, serum-free Williams E medium containing the test compound at a final concentration of 10 ⁇ M and a final DMSO content of 0.1% and 0.1% DMSO (solvent- treated control), respectively, was added to predefined wells. Exposure solutions were re- newed after 24h.
- RNA quantification was conducted using a customized QuantiGene Plex Panel to ana- lyse CYP3A4 and the housekeeper genes RPL32, EIF4E2 and GUSB according to the instructions of the manufacturer and measured on a LuminexTM instrument. Signal was re- ported as median fluorescence intensity (MFI), which is proportional to the number of tar- get RNA molecules present in the sample.
- MFI median fluorescence intensity
- n-fold induction (MFI CYP3 A4 (treated) / Xgeo MFI (RPL32,EIF4E2,GUSB)) /(MFI
- Table 9 Biological data for compounds of the invention as obtained in Assay D.
- Table 10 Biological data for prior art compounds as obtained in Assay D.
- Assay E Stability in murine hepatocytes
- the metabolic degradation of the test compound is assayed in a murine hepatocyte suspen- sion.
- Murine hepatocytes are incubated in an appropriate buffer system (e.g. Dulbecco's modified eagle medium plus 3.5pg glucagon/500mL, 2.5mg insu- lin/500mL and 3.75mg/500mL hydrocorti son) containing 5% species serum.
- an appropriate buffer system e.g. Dulbecco's modified eagle medium plus 3.5pg glucagon/500mL, 2.5mg insu- lin/500mL and 3.75mg/500mL hydrocorti son
- test compound solution 80 ⁇ M; from 2mM in DMSO stock solution diluted 1 :25 with me- dium
- 395 pl hepatocyte suspension cell density in the range 0.25-5 Mio cells/mL, typically 1 Mio cells/mL; final concentration of test compound I ⁇ M, final DMSO concentration 0.05%).
- the cells are incubated for six hours (incubator, orbital shaker) and samples (25 pl) are taken at 0, 0.5, 1, 2, 4 and 6 hours. Samples are transferred into acetonitrile and pelleted by centrifugation (5 min). The supernatant is transferred to a new 96-deepwell plate, evapo- rated under nitrogen and resuspended.
- CO initial concentration in the incubation [ ⁇ M]
- CD cell density of vital cells [10e6cells/mL]
- AUD area under the data [ ⁇ M x h]
- clast concentration of last data point [ ⁇ M]
- k slope of the regression line for parent decline [h-1 ] .
- the calculated in vitro hepatic intrinsic clearance can be scaled up to the intrinsic in vivo hepatic Clearance and used to predict hepatic in vivo blood clearance (CL) by the use of a liver model (well stirred model).
- CL INTRINSIC INVIVO [ml/min/kg] (CL INTRINSIC [pL/min/10e6cells] x hepato- cellularity [10e6 cells/g liver] x liver factor [g/kg bodyweight]) / 1000
- CL [ml/min/kg] CL INTRINSIC INVIVO [ml/min/kg] x hepatic blood flow [ml/min/kg] / (CL INTRINSIC INVIVO [ml/min/kg] + hepatic blood flow [ml/min/kg])
- QH [%] CL [ml/min/kg] / hepatic blood flow [ml/min/kg])
- Table 12 Biological data for compounds of the invention as obtained in Assay E.
- the metabolic degradation of the test compound was assayed at 37 °C with pooled liver microsomes from various species.
- the final incubation volume of 60 pl per time point con- tains TRIS buffer pH 7.6 at room temperature (0.1 M), magnesium chloride (5 mM), micro- somal protein (1 mg/mL for human and dog, 0.5 mg/mL for other species) and the test com- pound at a final concentration of 1 ⁇ M.
- the reactions were initiated by addition of betanicotinamide adenine dinucleotide phosphate, re- Jerusalem form (NADPH, 1 mM), and terminated by transferring an aliquot into solvent after different time points.
- Liver factor, human 25.7 g / kg bodyweight
- the metabolic degradation of a test compound is assayed in a human hepatocyte suspen- sion.
- human hepatocytes are diluted in Dulbecco's modified eagle medium (supplemented with 3.5 pg glucagon/500 mL, 2.5 mg insulin/500 mL, 3.75 mg hydrocorti sone/500 mL, 5% human serum) to obtain a final cell density of LOxlO 6 cells/mL.
- test compound solution is spiked into the hepatocyte suspension, resulting in a final test com- pound concentration of 1 ⁇ M and a final DMSO concentration of 0.05 %.
- the cell suspension is incubated at 37 °C (cell culture incubator, horizontal shaker) and samples are removed from the incubation after 0, 0.5, 1, 2, 4 and 6 hours. Samples are quenched with acetonitrile (containing internal standard) and pelleted by centrifugation. The supernatant is transferred to a 96-deepwell plate, and prepared for analysis of decline of parent compound by HPLC-MS/MS.
- test compound/internal standard The log-transformed data are plotted versus incubation time, and the absolute value of the slope obtained by linear regression analysis is used to estimate in vitro half- life (T 1/2).
- in vitro intrinsic clearance (CLint) is calculated from in vitro Tl/2 and scaled to whole liver using a hepatocellularity of 120x106 cells/g liver, a human liver per body weight of 25.7 g liver/kg as well as in vitro incubation parameters, applying the following equation:
- CL INTRINSIC IN VIVO [mL/min/kg] (CL INTRINSIC [pL/min/106 cells] x hepato- cellularity [106 cells/g liver] x liver factor [g/kg body weight]) / 1000
- Hepatic in vivo blood clearance is predicted according to the well-stirred liver model considering an average liver blood flow (QH) of 20.7 mL/min/kg:
- CL [mL/min/kg] CL INTRINSIC IN VIVO [mL/min/kg] x hepatic blood flow [mL/min/kg] / (CL_INTRINSIC_IN VIVO [mL/min/kg] + hepatic blood flow [mL/min/kg])
- Results are expressed as percentage of hepatic blood flow:
- Equilibrium dialysis technique is used to determine the approximate in vitro fractional binding of test compounds to plasma proteins applying Dianorm Teflon dialysis cells (micro 0.2).
- Each dialysis cell consists of a donor and an acceptor chamber, separated by an ultrathin semipermeable membrane with a 5 kDa molecular weight cutoff.
- Stock solutions for each test compound are prepared in DMSO at 1 mM and serially diluted to obtain a final test concentration of 1 ⁇ M.
- the subsequent dialysis solutions are prepared in plasma (supplemented with NaEDTA as anticoagulant), and aliquots of 200 pl test compound dialysis solution in plasma are dispensed into the donor (plasma) chambers.
- %bound (plasma concentration - buffer concentration/ plasma concentration) X 100
- Saturated solutions are prepared in well plates (format depends on robot) by adding an ap- basementte volume of selected aqueous media (typically in the range of 0.25 - 1.5 ml) into each well which contains a known quantity of solid drug substance (typically in the range 0.5 - 5.0 mg).
- the wells are shaken or stirred for a predefined time period (typically in a range of 2 - 24 h) and then filtered using appropriate filter membranes (typically PTFE-fil- ters with 0.45 ⁇ m pore size). Filter absorption is avoided by discarding the first few drops of filtrate.
- the amount of dissolved drug substance is determined by UV spectroscopy.
- the pH of the aqueous saturated solution is measured using a glass-electrode pH meter.
- the metabolic pathway of a test compound is investigated using primary human hepatocytes in suspension. After recovery from cryopreservation, human hepatocytes are incubated in Dulbecco's modified eagle medium containing 5% human serum and supplemented with 3.5 pg glucagon/500ml, 2.5mg insulin/500ml and 3.75mg/500ml hydrocortisone.
- test com- pound solution is spiked into the hepatocyte suspension to obtain a final cell density of 1.0* 10 6 to 4.0* 10 6 cells/ml (depending on the metabolic turnover rate of the compound ob- served with primary human hepatocytes), a final test compound concentration of 10 ⁇ M, and a final DMSO concentration of 0.05%.
- the cells are incubated for six hours in a cell culture incubator on a horizontal shaker, and samples are removed from the incubation after 0, 0.5, 1, 2, 4 or 6 hours, depending on the metabolic turnover rate. Samples are quenched with acetonitrile and pelleted by centrifuga- tion. The supernatant is transferred to a 96-deepwell plate, evaporated under nitrogen and resuspended prior to bioanalysis by liquid chromatography-high resolution mass spectrom- etry for identification of putative metabolites. The structures are assigned tentatively based on Fourier-Transform-MS n data. Metabolites are reported as percentage of the parent in human hepatocyte incubation with a threshold of > 4%.
- test compound is administered either intravenously or orally to the respective test spe- cies. Blood samples are taken at several time points post application of the test compound, anticoagulated and centrifuged.
- the concentration of analytes - the administered compound and/or metabolites - are quanti- fied in the plasma samples.
- PK parameters are calculated using non compartment methods. AUC and Cmax are normalized to a dose of 1 ⁇ mol/kg.
- the present invention is directed to compounds of general formula (I) which are useful in the prevention and/or treatment of a disease and/or condition associated with or modulated by QPCT/L activity, including but not limited to the treatment and/or prevention of cancer, fibrotic diseases, neurodegenerative diseases, atherosclerosis, infectious diseases, chronic kidney diseases.
- Pulmonary fibrotic diseases such as pneumonitis or interstitial pneumonitis associated with collagenosis, e g. lupus erythematodes, systemic scleroderma, rheumatoid arthritis, polymyositis and dermatomysitis, idiopathic interstitial pneumonias, such as pulmonary lung fibrosis (IPF), non-specific interstitial pneumonia, respiratory bronchiolitis associated interstitial lung disease, desquamative interstitial pneumonia, cryptogenic orgainizing pneumonia, acute interstitial pneumonia and lymphocytic interstitial pneumonia, lymangi- oleiomyomatosis, pulmonary alveolar proteinosis, Langerhan's cell histiocytosis, pleural parenchymal fibroelastosis, interstitial lung diseases of known cause, such as interstitial pneumonitis as a result of occupational exposures
- idiopathic interstitial pneumonias such as pulmonary lung fibro
- fibrotic diseases such as hepatic bridging fibrosis, liver cirrhosis, non-alcoholic steatohepatitis (NASH), atrial fibrosis, endomyocardial fibrosis, old myocardial infarction, glial scar, arterial stiffness, arthrofibrosis, Dupuytren's contracture, keloid, scleroderma/ systemic sclerosis, mediastinal fibrosis, myelotibrosis, Peyronie's disease, nephrogenic systemic fibrosis, retroperitoneal fibrosis, adhesive capsulitis; spontaneous acute exacerba- tions in pulmonary fibrosis and progressive pulmonary fibrosis or induced by infection, microaspiration, surgical lung biopsy, surgical resection, bronchoscopy (BAL, cryobi- opsy), air pollution, prior exacerbation and medications.
- NASH non-alcoholic steatohepatitis
- Leukemia acute myeloid leukemia (AML), acute promyelocytic leukemia (APL), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), T-cell acute lym- phoblastic leukemia (T-ALL), lymphoma, B-cell lymphoma, T-cell lymphoma, Hodgkin’s disease, non-Hodgkin’s lymphoma (NHL), hairy cell lymphoma, Burkett’s lymphoma, multiple myeloma (MM), myelodysplastic syndrome, solid cancer, lung cancer, adenocar- cinoma, small cell lung cancer (SCLC), non-small cell lung cancer (NSCLC), mediastinum cancer, peritoneal cancer, mesothelioma, gastrointestinal cancer, gastric cancer, stomach cancer, bowel cancer, small bowel cancer, large bowel cancer, colon cancer, colon adeno- carcinoma, colon adenoma, rectal cancer,
- Inflammatory, auto-immune or allergic diseases and conditions such as asthma, pediat- ric asthma, allergic bronchitis, alveolitis, hyperreactive airways, allergic conjunctivitis, bronchiectasis, adult respiratory distress syndrome, bronchial and pulmonary edema, bron- chitis or pneumonitis, non-allergic asthma, chronic obstructive pulmonary disease (COPD), acute bronchitis, chronic bronchitis, pulmonary emphysema; autoimmune diseases, such as rheumatoid arthritis, Graves’ disease, Sjogren's syndrome psoriatic arthritis, multiple scle- rosis, systemic lupus Erythematosus, inflammatory bowel diseases, such as Crohn's disease and ulcerative colitis, scleroderma; psoriasis (including T-cell mediated psoriasis) and in- flammatory dermatoses such as
- Neurodegenerative disorders such as amyotrophic lateral sclerosis, multiple sclerosis, Parkinson's disease, Alzheimer's disease, Huntington's disease, multiple system atrophy, or prion diseases.
- the present invention relates to a compound of general formula (I) or a phar- maceutically acceptable salt thereof for use as a medicament.
- the present invention relates to the use of a compound of general formula (I) for the treatment and/or prevention of a disease and/or condition associated with or modu- lated by QPCT/L activity.
- the present invention relates to the use of a compound of general formula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof for the treatment and/or prevention of cancer, fibrotic diseases, neurodegenerative diseases, atherosclerosis, infectious diseases, chronic kidney diseases. Furthermore, the present invention relates to the use of a compound of general formula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof for the treatment and/or prevention of: (1) Pulmonary fibrotic diseases such as pneumonitis or interstitial pneumonitis associated with collagenosis, e g.
- interstitial pneumonias such as pulmonary lung fibrosis (IPF), non-specific interstitial pneumonia, respiratory bronchiolitis associated interstitial lung disease, desquamative interstitial pneu- monia, cryptogenic orgainizing pneumonia, acute interstitial pneumonia and lymphocytic interstitial pneumonia, lymangioleiomyomatosis, pulmonary alveolar proteinosis, Langer- han's cell histiocytosis, pleural parenchymal fibroelastosis, interstitial lung diseases of known cause, such as interstitial pneumonitis as a result of occupational exposures such as asbestosis, silicosis, miners lung (coal dust), farmers lung (hay and mould), Pidgeon fanci- ers lung (birds) or other occupational airbourne triggers such as metal dust
- fibrotic diseases such as hepatic bridging fibrosis, liver cirrhosis, non-alcoholic steatohepatitis (NASH), atrial fibrosis, endomyocardial fibrosis, old myocardial infarction, glial scar, arterial stiffness, arthrofibrosis, Dupuytren's contracture, keloid, scleroderma/ systemic sclerosis, mediastinal fibrosis, myelotibrosis, Peyronie's disease, nephrogenic systemic fibrosis, retroperitoneal fibrosis, adhesive capsulitis; spontaneous acute exacerba- tions in pulmonary fibrosis and progressive pulmonary fibrosis or induced by infection, microaspiration, surgical lung biopsy, surgical resection, bronchoscopy (BAL, cryobi- opsy), air pollution, prior exacerbation and medications.
- NASH non-alcoholic steatohepatitis
- Leukemia acute myeloid leukemia (AML), acute promyelocytic leukemia (APL), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), T-cell acute lym- phoblastic leukemia (T-ALL), lymphoma, B-cell lymphoma, T-cell lymphoma, Hodgkin’s disease, non-Hodgkin’s lymphoma (NHL), hairy cell lymphoma, Burkett’s lymphoma, multiple myeloma (MM), myelodysplastic syndrome, solid cancer, lung cancer, adenocarcinoma, small cell lung cancer (SCLC), non-small cell lung cancer (NSCLC), me- diastinum cancer, peritoneal cancer, mesothelioma, gastrointestinal cancer, gastric cancer, stomach cancer, bowel cancer, small bowel cancer, large bowel cancer, colon cancer, colon adenocarcinoma, colon adenoma, rec
- Inflammatory, auto-immune or allergic diseases and conditions such as asthma, pediat- ric asthma, allergic bronchitis, alveolitis, hyperreactive airways, allergic conjunctivitis, bronchiectasis, adult respiratory distress syndrome, bronchial and pulmonary edema, bron- chitis or pneumonitis, non-allergic asthma, chronic obstructive pulmonary disease (COPD), acute bronchitis, chronic bronchitis, pulmonary emphysema; autoimmune diseases, such as rheumatoid arthritis, Graves’ disease, Sjogren's syndrome psoriatic arthritis, multiple scle- rosis, systemic lupus Erythematosus, inflammatory bowel diseases, such as Crohn's disease and ulcerative colitis, scleroderma; psoriasis (including T-cell mediated psoriasis) and in- flammatory dermatoses such as
- Neurodegenerative disorders such as amyotrophic lateral sclerosis, multiple sclerosis, Parkinson's disease, Alzheimer's disease, Huntington's disease, multiple system atrophy, or prion diseases.
- the present invention relates to a compound of general formula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof for use in the treatment and/or prevention of above-mentioned diseases and conditions.
- the present invention relates to the use of a compound of general for- mula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof for the preparation of a medicament for the treatment and/or prevention of above- mentioned diseases and conditions.
- the present invention relates to methods for the treatment or prevention of above-mentioned diseases and conditions, which method com- prises the administration of an effective amount of a compound of general formula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof to a hu- man being.
- the compounds of the invention may further be combined with one or more, preferably one additional therapeutic agent.
- the additional therapeutic agent is selected from the group of therapeutic agents useful in the treatment of diseases or conditions described hereinbefore, in particular associated with cancer, fibrotic diseases, Alzheimer’s diseases, atherosclerosis, infectious diseases, chronic kidney diseases and auto-immune disease.
- Additional therapeutic agents that are suitable for such combinations include in particular those, which, for example, potentiate the therapeutic effect of one or more active sub- stances with respect to one of the indications mentioned and/or allow the dosage of one or more active substances to be reduced.
- a compound of the invention may be combined with one or more additional therapeutic agents selected from the group consisting of chemotherapy, targeted cancer therapy, cancer immunotherapy, irradiation, antifibrotic agents, anti-tussive agents, anti- inflammatory agents, anti-atopic dermatitis, and broncho dilators.
- Chemotherapy is a type of cancer therapy that uses one or more chemical anti-cancer drugs, such as cytostatic or cytotoxic substances, cell proliferation inhibitors, anti-angio- genic substances and the like.
- Examples include folic acid (Leucovorin), 5-Fluorouracil, Irinotecan, Oxaliplatin, cis-platin Azacytidine, gemcitabine, alkylation agents, antimitotic agents, taxanes and further state-of-the-art or standard-of-care compounds.
- Targeted therapy is a type of cancer treatment that uses drugs to target specific genes and proteins that help cancer cells survive and grow.
- Targeted therapy includes agents such as inhibitors of growth factors (e.g. platelet derived growth factor (PDGF), fibroblast growth factor (FGF), vascular endothelial growth factor (VEGF), epidermal growth factor (EGF), insulin-like growth factors (IGF), human epidermal growth factor (HER, e.g. HER2, HER3, HER4) and hepatocyte growth factor), tyrosine-kinases, KRAS, BRAF, BCR-ABL, mTOR, cyclin-dependent kinases, or MDM2.
- growth factors e.g. platelet derived growth factor (PDGF), fibroblast growth factor (FGF), vascular endothelial growth factor (VEGF), epidermal growth factor (EGF), insulin-like growth factors (IGF), human epidermal growth factor (HER, e.g. HER2, HER3, HER4 and
- Cancer immunotherapy is a type of therapy that uses substances to stimulate or suppress the immune system to help the body fight cancer.
- Cancer immunotherapy includes a thera-plastic antibody, such as: anti-Her2 antibody, an anti-EGFR antibody, and an anti-PDGFR antibody; an anti-GD2 (Ganglioside G2) antibody.
- thera-collated antibody such as: anti-Her2 antibody, an anti-EGFR antibody, and an anti-PDGFR antibody; an anti-GD2 (Ganglioside G2) antibody.
- Examples include Dinutuximab, Olara- tumab, Trastuzumab, Pertuzumab, Ertumaxomab, Cetuximab, Necitumumab, Nimotuzumab, Panitumumab, or rituximab.
- Cancer immunotherapy also includes a thera- Commission TiA4 antibody which is a checkpoint inhibitor, such as an anti PD1, anti PD-L1 antibody or CTLA4 inhibitor.
- a checkpoint inhibitor such as an anti PD1, anti PD-L1 antibody or CTLA4 inhibitor.
- examples include Atezolizumab, Avelumab, and Durvalumab, Ipili- mumab, nivolumab, or pembrolizumab.
- Cancer immunotherapy also includes agents which target (inhibit) the CD47-SIRPa signaling axis, such as agents which bind to CD47 or SIRPa.
- Non-limiting examples include antibodies such as anti-CD47 antibodies and anti- SIRPa antibodies, and recombinant Fc-fusion proteins such as CD47-Fc and SIRPa-Fc.
- Cancer immunotherapy also includes STING-targeting agent, or T cell engagers, such as blinatumomab.
- Antifibrotic agents are for example nintedanib, pirfenidone, phosphodiesterase-IV (PDE4) inhibitors such as roflumilast or specific PDE4b inhibitors like BI 1015550, autotaxin in- hibitors such as GLPG-1690 or BBT-877; connective tissue growth factor (CTGF) block- ing antibodies such as Pamrevlumab; B-cell activating factor receptor (BAFF-R) blocking antibodies such as Lanalumab, alpha-V/beta-6 blocking inhibitors such as BG-00011/STX- 100, recombinant pentraxin-2 (PTX-2) such as PRM-151; c-Jun-N-terminal kinase (JNK) inhibitors such as CC-90001; galectin-3 inhibitors such as TD-139; G-protein coupled re- ceptor 84 (GPR84) inhibitors ; G-protein coupled receptor 84/ G-protein coupled receptor 40 dual inhibitors such as
- Lysyl Oxidase Like 2 (LOXL2) inhibitors such as PAT-1251, PXS-5382/PXS-5338; phosphoinositide 3-kinases (PI3K)/ mammalian target of rapamycin (mTOR) dual inhibi- tors such as EEC-68498; calpain inhibitors such as BLD-2660; mitogen-activated protein kinase kinase kinase (MAP3K19) inhibitors such as MG-S-2525; chitinase inhibitors such as OATD-01, mitogen-activated protein kinase-activated protein kinase 2 (MAPKAPK2) inhibitors such as MMI0100; transforming growth factor beta I (TGF-beta I) small inter- fering RNA such as TRKZSO/BNC-1021; or lysophosphatidic acid receptor antagonists such as BMS986278.
- LXL2 Lysyl Oxidase Like 2
- the dosage for the combination partners mentioned above is usually 1/5 of the lowest dose normally recommended up to 1/1 of the normally recommended dose.
- this invention relates to the use of a compound according to the invention in combination with one or more additional therapeutic agents described hereinbefore and hereinafter for the treatment of diseases or conditions which may be af- fected or which are mediated by QPCT/L, in particular diseases or conditions as described hereinbefore and hereinafter.
- this invention relates to a method for treating a disease or condition which can be influenced by the inhibition of QPCT/L in a patient that includes the step of administering to the patient in need of such treatment a therapeutically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof in combination with a therapeutically effective amount of one or more additional therapeutic agents.
- this invention relates to the use of a compound of formula (I) or a phar- maceutically acceptable salt thereof in combination with one or more additional therapeutic agents for the treatment of diseases or conditions which can be influenced by the inhibition of QPCT/L in a patient in need thereof.
- the present invention relates to a method for the treatment of a disease or condition mediated by QPCT/L activity in a patient that includes the step of administer- ing to the patient, preferably a human, in need of such treatment a therapeutically effective amount of a compound of the present invention in combination with a therapeutically ef- fective amount of one or more additional therapeutic agents described in hereinbefore and hereinafter.
- the compound according to the invention and the one or more additional therapeutic agents may both be present together in one formulation, for example a tablet or capsule, or separately in two identical or different formulations, for example as a so-called kit-of-parts.
- this invention relates to a pharmaceutical composition that comprises a compound according to the invention and one or more additional thera- Treatmentic agents described hereinbefore and hereinafter, optionally together with one or more inert carriers and/or diluents.
- the compounds according to the present invention and their intermediates may be obtained using methods of synthesis which are known to the one skilled in the art and described in the literature of organic synthesis.
- the compounds are obtained in analogous fashion to the methods of preparation explained more fully hereinafter, in particular as de- scribed in the experimental section.
- the order in carrying out the reaction steps may be varied. Variants of the reaction methods that are known to the one skilled in the art but not described in detail here may also be used.
- the compounds according to the invention are prepared by the methods of synthesis de- scribed hereinafter in which the substituents of the general formulae have the meanings given herein before. These methods are intended as an illustration of the invention without restricting its subject matter and the scope of the compounds claimed to these examples. Where the preparation of starting compounds is not described, they are commercially ob- tainable or may be prepared analogously to known compounds or methods described herein. Substances described in the literature are prepared according to the published meth- ods of synthesis. Abbreviations are as defined in the Examples section.
- the reaction can typically be run at ambient temperature or at elevated temperature (up to 110 °C) in the presence of a base (e.g. diiso- propylethylamine).
- the intermediate (C) is then subjected to a Suzuki-cross coupling with a hetero-aryl boronic acid derivative in the presence of a suitable catalyst (e.g. Pd(dppf)C12) and a suitable base at elevated temperature (e.g. 100 °C) to afford compounds of general formula (I).
- the heteroaryl boronic acid derivatives are either commercially available or can be prepared by the corresponding heteroaryl bromides as described.
- Compounds (D) can be prepared by reaction of piperidines (A) with fluoro-pyridonitriles (B) in the presence of a suitable base (e.g. diisopropylethylamine).
- a suitable base e.g. diisopropylethylamine
- the reaction can typi- cally be run at ambient temperature or at elevated temperature (up to 110 °C) in the pres- ence of a base (e.g. diisopropylethylamine).
- the intermediate (D) is then subjected to a Su- zuki-cross coupling with a hetero-aryl boronic acid derivative in the presence of a suitable catalyst (e.g. Pd(dtbpf)C12) and a suitable base at elevated temperature (e.g.
- Examples 1-9, 13 and 14 can be obtained by Su- zuki-cross coupling with a fluoro-pyridine boronic acid derivative in the presence of a suitable catalyst (e.g. Pd(dppf)C12) and a suitable base at elevated temperature (e.g. 100 °C) to afford examples 1-9, 13 and 14.
- a suitable catalyst e.g. Pd(dppf)C12
- a suitable base e.g. 100 °C
- Compounds of formula (A) can be prepared from the corresponding piperidinyl esters (F) equipped with a suitable protecting group (PG, e.g. BOC) by treatment with a suitable hy- drazine source (e.g. N 2 H 4 *H 2 O) at elevated temperature (e.g. 50 °C).
- PG e.g. BOC
- a suitable hy- drazine source e.g. N 2 H 4 *H 2 O
- the obtained hydra- zide (G) is then activated with DMF/DMA at elevated temperature (e.g. 50 °C) and subse- quently treated with methyl amine at elevated temperature (e.g. 90 °C) to yield the triazole derivative (H).
- Compounds of formula (A) can be obtained by cleaving the protecting group under suitable conditions (e.g. TFA).
- the compounds according to the invention and their intermediates may be obtained using methods of synthesis which are known to the one skilled in the art and described in the lit- erature of organic synthesis for example using methods described in “Comprehensive Or- ganic Transformations”, 2nd Edition, Richard C. Larock, John Wiley & Sons, 2010, and “March’s Advanced Organic Chemistry”, 7th Edition, Michael B. Smith, John Wiley & Sons, 2013.
- the compounds are obtained analogously to the methods of prepara- tion explained more fully hereinafter, in particular as described in the experimental section.
- the sequence adopted in carrying out the reaction schemes may be varied. Variants of these reactions that are known to the skilled artisan but are not described in de- tail herein may also be used.
- the hydrochloride salt (13.5 g) is added to a solution of ammonia in methanol (7 M, 150 mL) and purified by column chromatography (Biotage SNAP Cartridge KP-NH 110 g, gra- pro DCM/MeOH 4:1 to 7:3) to afford the title compound.
- 6-bromo-2-chloro-3-fluoropyridine (6.80 g, 30.7 mmol) is added to THF (30 mL), and the resulting mixture is cooled to -75 °C.
- a solution of lithium diisopropylamide (1 M in THF, 30.7 mL, 30.7 mmol) is added dropwise, and the mixture is stirred for 1 h at -75 °C.
- DMF (2.83 mL, 36.8 mmol) is added dropwise. The mixture is stirred for additional 2 h at -78 °C.
- the reaction is quenched by addition of acetic acid (2.64 mL) and diluted with water/brine 1/1 and ethyl acetate and allowed to warm to ambient temperature.
- the organic phase is separated, dried over Na 2 SO4, and concentrated.
- the residue is purified by column chromatography (SiO 2 , CyH/EtOAc gradient 1 :0 to 1 : 1) to yield 6-bromo-2-chl oro-3 -fluoropyridine-4-carbaldehyde.
- 6-Bromo-2-chloro-3-fluoropyridine-4-carboxamide (510 mg, 2.01 mmol) is suspended in dichloromethane (10 mL), and Burgess reagent (CAS: 29684-56-8, 742 mg, 3.02 mmol) is added at ambient temperature. The resulting reaction mixture is stirred for 16 h and then directly purified by column chromatography (SiO 2 , CyH/EtOAc gradient 1 :0 to 9: 1) to yield the title compound.
- 2-chloro-3-fluoro-6-(trifluoromethyl)pyridine (14.2 g, 69.7 mmol) is added to THF (330 mL), and the resulting mixture is cooled to -75 °C.
- a solution of lithium diisopropylamide (1 M in THF, 77.0 mL, 77.0 mmol) is added dropwise in a period of 90 min, and the mixture is stirred for 60 min at -75 °C.
- DMF (6.44 mL, 83.7 mmol) is added dropwise. The mixture is stirred for additional 30 min at -75 °C.
- the reaction is quenched by addition of a half concentrated acetic acid (40 mL) and diluted with water and EtOAc.
- the organic phase is separated, washed with brine, dried, and concentrated.
- the residue is purified by column chromatography (SiCL, CyH/EtOAc gradient 100:0 to 85: 15) to yield the desired compound.
- Int. II.2 (1.00 g, 4.25 mmol) is suspended in DMSO (4.0 mL) and DIPEA (1.47 mL, 8.50 mmol). At 15 °C, Int. 1.1 (900 mg, 4.89 mmol) is added, and the resulting mixture is stirred at 15 °C for 2 h. The mixture is diluted with ACN/water and purified by preparative HPLC (Sunfire C18, acetonitrile/water gradient containing 0.1% TFA) to afford the desired compound.
- Example 1 To a mixture of Int. V.2 (12.0 mg, 28.9 ⁇ mol) and 2-fhroro-5-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)pyridine (9.9 mg, 43.4 ⁇ mol) in 1,4-dioxane (0.5 mL) is added potassium carbonate (2 M in water, 50.6 pL, 0.101 mmol). The resulting mixture is purged by passing an argon stream through the mixture. Pd(dppf)C12 (2.1 mg, 2.9 ⁇ mol) is added, and the mixture is further purged with argon for 5 min. The reaction mixture is stirred at 95 °C for 16 h.
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Abstract
The present disclosure provides certain piperidinyIpyridinylcarbonitrile derivatives, and pharmaceutically acceptable salts thereof, that are inhibitors of Glutaminyl -peptide cyclotransferase (QPCT) and glutaminyl-peptide cyclotransferase-like protein (QPCTL), and are therefore useful for the treatment of diseases treatable by inhibition of QPCT/L. Also provided are pharmaceutical compositions containing the same, and processes for preparing said compounds.
Description
PIPERIDINYLPYRIDINYLCARBONITRILE DERIVATIVES AS INHIBITORS OF GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE AND GLUTAMINYL- PEPTIDE CYCLOTRANSFERASE LIKE PROTEIN
TECHNICAL FIELD
The present disclosure provides certain piperidinylpyridinylcarbonitrile derivatives, and pharmaceutically acceptable salts thereof, that are inhibitors of Glutaminyl-peptide cy- clotransferase (QPCT) and glutaminyl-peptide cyclotransferase-like protein (QPCTL), and are therefore useful for the treatment of diseases treatable by inhibition of QPCT/L. Also provided are pharmaceutical compositions containing the same, and processes for preparing said compounds.
BACKGROUND INFORMATION
Glutaminyl-peptide cyclotransferase (QPCT) and glutaminyl-peptide cyclotransferase-like protein (QPCTL) catalyze the intramolecular cyclization of N-terminal glutamine (Q) resi- dues into pyroglutamic acid (pE) liberating ammonia [Stephan Schilling et al., “Identifica- tion of Human Glutaminyl Cyclase as a Metalloenzyme POTENT INHIBITION BY IMID- AZOLE DERIVATIVES AND HETEROCYCLIC CHELATORS,” Journal of Biological Chemistry 278, no. 50 (2003): 49773-79, https://doi.org/10.1074/jbc.m309077200; Holger Cynis et al., “Isolation of an Isoenzyme of Human Glutaminyl Cyclase: Retention in the Golgi Complex Suggests Involvement in the Protein Maturation Machinery,” Journal of Molecular Biology 379, no. 5 (2008): 966-80, https://doi.org/10.1016/jjmb.2008.03.078; Anett Stephan et al., “Mammalian Glutaminyl Cyclases and Their Isoenzymes Have Identi- cal Enzymatic Characteristics,” FEBS Journal 276, no. 22 (2009): 6522-36, https://doi.Org/10.1111/j.1742-4658.2009.07337.x.]. While QPCT is a secreted protein, QPCTL is retained within the Golgi complex. Both enzymes share a high homology in the active site and similar catalytic specificity. Because of the high homology in the active site, inhibition of the active site- blocks the enzymatic activity of both enzymes: QPCT and QPCTL. Hence the term “QPCT/L” describes both enzymes at once. Due to their different cellular localisation, differences in their relevance for modification of biological substrates have been reported. Known substrates of the intracellular QPCTL and/or extracellular QPCT are CD47 [Meike E. W. Logtenberg et al., “Glutaminyl Cyclase Is an Enzymatic Modifier of the CD47- SIRPa Axis and a Target for Cancer Immunotherapy,” Nature Medicine 25,
no. 4 (2019): 612-19, https://doi.org/10.1038/s41591-019-0356-z.], different chemokines (like for example CCL2 and 7 or CX3CL1) [Rosa Barreira da Silva et al., “Loss of the In- tracellular Enzyme QPCTL Limits Chemokine Function and Reshapes Myeloid Infiltration to Augment Tumor Immunity,” Nature Immunology 23, no. 4 (2022): 568-80, https://doi.org/10.1038/s41590-022-01153-x; Astrid Kehlen et al., “N-Terminal Pyrogluta- mate Formation in CX3CL1 Is Essential for Its Full Biologic Activity,” Bioscience Reports 37, no. 4 (2017): BSR20170712, https://doi.org/10.1042/bsr20170712.], Amyloid-b pep- tides [Cynis et al., “Isolation of an Isoenzyme of Human Glutaminyl Cyclase: Retention in the Golgi Complex Suggests Involvement in the Protein Maturation Machinery.”] or hor- mones like TRH [Andreas Becker et al., “IsoQC (QPCTL) Knock-out Mice Suggest Differ- ential Substrate Conversion by Glutaminyl Cyclase Isoenzymes,” Biological Chemistry 397, no. 1 (2016): 45-55, https://doi.org/10.1515/hsz-2015-0192.]. The modification of N-termi- nal glutamine to pyroglutamate on the substrates has functional consequences for the pro- teins and could impact different pathomechanisms in several diseases. CD47 is expressed on the cell surface of virtually all cells of the body, including apoptotic cells, senescent cells or cancer cells. [Meike E.W. Logtenberg, Ferenc A. Scheeren, and Ton N. Schumacher, “The CD47-SIRPa Immune Checkpoint,” Immunity 52, no. 5 (2020): 742-52, https://doi.Org/10.1016/j.immuni.2020.04.011]. The main ligand for CD47 is signal-regula- tory protein alpha (SIRPa), an inhibitory transmembrane receptor present on myeloid cells, such as macrophages, monocytes, neutrophils, dendritic cells and others. QPCTL mediated N-terminal pyroglutamate modification on CD47 is required for SIRPa binding [Deborah Hatherley et al., “Paired Receptor Specificity Explained by Structures of Signal Regulatory Proteins Alone and Complexed with CD47,” Molecular Cell 31, no. 2 (2008): 266-77, https://doi.Org/10.1016/j.molcel.2008.05.026; Meike E. W. Logtenberg et al., “Glutaminyl Cyclase Is an Enzymatic Modifier of the CD47- SIRPa Axis and a Target for Cancer Immu- notherapy,” Nature Medicine 25, no. 4 (2019): 612-19, https://doi.org/10.1038/s41591-019- 0356-z.] This signaling axis induces a “Don’t Eat Me Signal”, preventing engulfment of CD47 expressing cells by macrophages. Thus, high expression of CD47 is connected to the pathogenesis of cancer [Logtenberg et al., “Glutaminyl Cyclase Is an Enzymatic Modifier of the CD47- SIRPa Axis and a Target for Cancer Immunotherapy,” 2019; Meike E.W. Log- tenberg, Ferenc A. Scheeren, and Ton N. Schumacher, “The CD47-SIRPa Immune Check- point,” Immunity 52, no. 5 (2020): 742-52, https://doi.Org/10.1016/j.immuni.2020.04.01 L], COVID-19 [Katie-May McLaughlin et al., “A Potential Role of the CD47/SIRPalpha Axis
in COVID-19 Pathogenesis,” Current Issues in Molecular Biology 43, no. 3 (2021): 1212— 25, https://doi.org/10.3390/cimb43030086.], lung fibrosis [Gerlinde Wernig et al., “Unify- ing Mechanism for Different Fibrotic Diseases,” Proceedings of the National Academy of Sciences 114, no. 18 (2017): 4757-62, https://doi.org/10.1073/pnas.1621375114; Lu Cui et al ., “Activation of JUN in Fibroblasts Promotes Pro-Fibrotic Programme and Modulates Pro- tective Immunity,” Nature Communications 11, no. 1 (2020): 2795, https://doi.org/10.1038/s41467-020-16466-4.], systemic sclerosis [Wernig et al., “Unifying Mechanism for Different Fibrotic Diseases”; Tristan Lerbs et al., “CD47 Prevents the Elim- ination of Diseased Fibroblasts in Scleroderma,” JCI Insight 5, no. 16 (2020): el40458, https://doi.org/10.1172/jci.insight.140458.] and liver fibrosis [Taesik Gwag et al., “Anti- CD47 Antibody Treatment Attenuates Liver Inflammation and Fibrosis in Experimental Non-alcoholic Steatohepatitis Models,” Liver International 42, no. 4 (2022): 829-41, https://doi.org/10. l l l l/liv.15182.]. Since enhanced CD47 expression blocks the clearance of apoptotic cells, there is an accrual of apoptotic lung epithelial cells, leading to a pro- fibrotic stimulus and accelerating lung inflammation and -scaring [Alexandra L. McCubbrey and Jeffrey L. Curtis, “Efferocytosis and Lung Disease,” Chest 143, no. 6 (2013): 1750-57, https://doi.org/10.1378/chest.12-2413; Brennan D. Gerlach et al., “Efferocytosis Induces Macrophage Proliferation to Help Resolve Tissue Injury,” Cell Metabolism, 2021, https://doi.Org/10.1016/j.cmet.2021.10.015.]. Since CD47 half-life and function is majorly dependent on QPCTL enzyme activity, QPCT and QPCTL inhibition could be a suitable mechanism as a treatment in lung fibrosis such as IPF or SSC-ILD [Lerbs et al., “CD47 Prevents the Elimination of Diseased Fibroblasts in Scleroderma.”], alone or together with current standard of care in pulmonary fibrosis like Nintedanib [Luca Richeldi et al., “Effi- cacy and Safety of Nintedanib in Idiopathic Pulmonary Fibrosis,” The New England Journal of Medicine 370, no. 22 (2014): 2071-82, https://doi.org/10.1056/nejmoal402584; Kevin R Flaherty et al., “Nintedanib in Progressive Fibrosing Interstitial Lung Diseases,” New England Journal of Medicine 381, no. 18 (2019): 1718-27, https://doi.org/10.1056/nejmoal90868L] or future treatments like a PDE4 inhibitor [Luca Richeldi et al., “Trial of a Preferential Phosphodiesterase 4B Inhibitor for Idiopathic Pulmo- nary Fibrosis,” New England Journal of Medicine 386, no. 23 (2022): 2178-87, https://doi.org/10.1056/nejmoa2201737].
By expression of CD47, cancer cells can evade destruction by the immune system or evade immune surveillance, e.g. by evading phagocytosis by immune cells [Stephen B. Willingham
et al., “The CD47-Signal Regulatory Protein Alpha (SIRPa) Interaction Is a Therapeutic Target for Human Solid Tumors,” Proceedings of the National Academy of Sciences 109, no. 17 (2012): 6662-67, https://doi.org/10.1073/pnas.1121623109].
In addition to CD47, chemokines, such as CCL2 and CX3CL1, have been identified as QPCTL and/or QPCT substrates [Holger Cynis et al., “The Isoenzyme of Glutaminyl Cyclase Is an Important Regulator of Monocyte Infiltration under Inflammatory Condi- tions,” EMBO Molecular Medicine 3, no. 9 (2011): 545-58, https://doi.org/10.1002/emmm.201100158], The formation of the N-terminal pGlu was shown to increase in vivo activity, both by conferring resistance to aminopeptidases and by increasing its capacity to induce chemokine receptor signaling. Two main monocyte chem- oattractants CCL2 and CCL7 are insensitive to DPP4-inactivation in vivo because of an in- tracellular mechanism of N-terminal cyclization mediated by the Golgi-associated enzyme QPCTL. It has been shown that QPCTL is a critical regulator of monocyte migration into solid tumors [Kaspar Bresser et al., “QPCTL Regulates Macrophage and Monocyte Abun- dance and Inflammatory Signatures in the Tumor Microenvironment,” Oncoimmunology 11, no. 1 (2022): 2049486, https://doi.org/10.1080/2162402x.2022.2049486; Rosa Barreira da Silva et al., “Loss of the Intracellular Enzyme QPCTL Limits Chemokine Function and Reshapes Myeloid Infiltration to Augment Tumor Immunity,” Nature Immunology, 2022, 1-13, https://doi.org/10.1038/s41590-022-01153-x]. Targeting of chemokines has long been pursued as a potential strategy for modulating cellular trafficking in different disease settings.
It is therefore desirable to provide potent QPCT/L inhibitors.
WO 2023/205173 discloses QPCTL modulators of the general formula:
which includes compound 14:
Compound
Compound 14 in WO 2023/205173 is disclosed therein [00470] as having inhibitory activ- ity on isolated QPCTL of IC50 < IμM and cellular activity in A549 cells of EC50 <1μM. Yu, L., Zhao, P., Sun, Y. et al. Sig Transduct Target Ther 8, 454 (2023) (herein “STTT 2023”) disclose compounds QP5020 and QP5038 as potent benzonitrile-based inhibitors of glutaminyl-peptide cyclotransferase-like protein (QPCTL) with antitumor efficacy:
Compound QP5020 is disclosed therein as having QPCTL inhibition activity of IC50 15.0 +/- 5.5 nM and QP5038 as having QPCTL inhibition activity of IC50 3.8 +/- 0.7 nM.
WO 2024/020517 discloses inhibitors of general formula:
which includes compound (1):
Compound (1) in WO 2024/020517 is disclosed therein [00698] as having inhibitory activ- ity on isolated QPCTL of IC50 < 0.1μM and cellular activity in Ramos cells of IC50 <0.1 μM. Compound (1) in WO 2024/020517 and QP5020 are identical.
Further selected examples in WO 2024/020517 are:
Compound 133.
Inhibitory activity on isolated QPCTL of IC50 < 0.1 μM; Inhibitory activity of DLD-1 cellular QPCTL activity in an imaging assay of <0.1 μM.
Compound 138.
Inhibitory activity on isolated QPCTL of IC50 >10 μM;
Compound 139.
Inhibitory activity on isolated QPCTL of IC50 >10 μM;
LEGEND TO THE FIGURES
Figure 1 - Introduction of the fluoro substituent on the piperidyl ring at the 4-position leads to increased permeability for QPCT/L inhibitors bearing a pyrido- or benzonitrile core.
Figure 2 - Introduction of the fluoro substituent on the piperidyl ring at the 4-position leads to decreased efflux ratio for QPCT/L inhibitors bearing a pyrido- or benzonitrile core.
DETAILED DESCRIPTION OF THE INVENTION
The present invention discloses novel piperidinylpyridinylcarbonitrile derivatives of for- mula (I)
that are inhibitors of Glutaminyl-peptide cyclotransferase (QPCT) and glutaminyl-peptide cyclotransferase-like protein (QPCTL), possessing appropriate pharmacological and phar- macokinetic properties enabling their use as medicaments for the treatment of conditions and/or diseases treatable by inhibition of QPCT/L.
The compounds of the present invention may provide several advantages, such as enhanced potency, cellular potency, high metabolic and/or chemical stability, high selectivity, safety and tolerability, enhanced solubility, enhanced permeability, desirable plasma protein bind- ing, enhanced bioavailability, suitable pharmacokinetic profiles, and the possibility to form stable salts.
Compounds of the invention
The present invention provides novel piperidinylpyridinylcarbonitrile derivatives that sur- prisingly, are potent inhibitors of QPCT and QPCTL (Assay A), as well as potent inhibi- tors of QPCT/L in cells relevant for, but not limited to, lung diseases or cancer, (Assay B). Furthermore, the present novel piperidinylpyridinylcarbonitrile derivatives have appropri- ate membrane permeability and a low in vitro efflux (Assay C).
Furthermore, the compounds of the present invention have a favorable CYP induction pro- file as indicated by a low n-fold induction of CYP3 A4 mRNA after incubation with the compound at 10 μM concentration (Assay D).
Furthermore, the compounds of the present invention show improved stability in murine hepatocytes that facilitates preclinical compound evaluation (Assay E).
Compounds of the present invention bear a fluoro substituent attached to the 4-position of the piperidyl ring (noted herein below as “4-fluoropiperidyl” in the tables), which show surprisingly higher permeability in CACO2-Cells and reduced efflux, (Assay C). This ef- fect is demonstrated with the following comparisons with the analogous non-fluoro com- pound:
The increase in permeability in CACO2-Cells between the compared pairs of compounds is depicted in Figure 1.
The decrease in efflux between the compared pairs of compounds is depicted in Figure 2.
Consequently, compounds of the present invention are more viable for human use.
Compounds of the present invention differ structurally from Compound 14 in WO 2023/205173 in that the triazolyl ring in the 4-position of the piperidyl ring does not contain an amino substituent. Furthermore, the 4-position of the piperidyl ring is further substituted with fluoro. Still furthermore, the ring attached to the 1 -position of the piperidyl ring is pyridyl, and said pyridyl ring has four substituents.
Compounds of the present invention differ structurally from the compounds in WO 2024/020517 including QP5020/Compound (1) in that the 4-position of the piperidyl ring is substituted with fluoro in addition to the triazolyl ring. Furthermore, the pyridyl ring attached to the 1 -position of the piperidyl ring has four substituents, with one substituent at the para- position relative to the piperidyl ring. This differs to compounds disclosed in WO 2024/020517 which have three substituents or a fourth substituent at the meta-position rela- tive to the piperidyl ring, such as Compound 133, Compound 138 and Compound 139.
These structural differences between compounds of the present invention and the prior art unexpectedly lead to a favourable combination of (i) potent inhibition of QPCT and QPCTL, (ii) potent inhibition of QPCT/L in cells relevant for, but not limited to, lung diseases or cancer, and (iii) appropriate membrane permeability and a low in vitro efflux, (iv) no or still acceptable induction of CYP3 A4 mRNA levels and (v) improved stability in murine hepato- cytes which facilitates preclinical compound evaluation and selection.
Compounds of the invention are thus superior to those disclosed in the prior art in terms of the combination of the following parameters:
• potent inhibition of QPCT and QPCTL (Assay A)
• potent inhibition of QPCT/L in cells relevant for, but not limited to, lung diseases or cancer (Assay B)
• appropriate membrane permeability and a low in vitro efflux (Assay C)
• no or still acceptable induction of CYP3 A4 mRNA levels (Assay D)
• improved stability in murine hepatocytes which facilitates preclinical compound evaluation and selection (Assay E)
The present invention provides novel compounds according to formula (I) wherein
A is selected from the group consisting of
R1 is selected from the group consisting of
or a salt thereof, particularly a pharmaceutically acceptable salt thereof.
Another embodiment of the present invention relates to a compound of formula (I), wherein R1 is H; and substituent A is defined as in any of the preceding embodiments.
Another embodiment of the present invention relates to a compound of formula (I) above, having formula (I-a)
wherein substituent A is defined as in any of the preceding embodiments. Particularly preferred is the compound according to formula (I) selected from the group consisting of
Particularly preferred is the compound according to formula (I) selected from the group consisting of example 1, example 2, example 3, example 4, example 5, example 6, example 7, example 8, example 9, example 10, example 11, example 12, example 13 and example 14 as described hereinafter in EXAMPLES.
Particularly preferred is the compound according to formula (I) selected from the group consisting of example 1, example 5, example 6, example 11 and example 14 as described hereinafter in EXAMPLES.
Particularly preferred is the compound according to formula (I) selected from the group consisting of example 1, example 3, example 5, example 7, example 13 and example 14 as described hereinafter in EXAMPLES.
The present invention provides novel piperidinylpyridinylcarbonitrile derivatives of for- mula (I) that are surprisingly potent QPCT/L inhibitors.
Another aspect of the invention refers to compounds according to formula (I) as surpris- ingly having potent inhibition of QPCT/L in cells relevant for, but not limited to, lung dis- eases or cancer.
Another aspect of the invention refers to compounds according to formula (I) as surpris- ingly cellular potent QPCT/L inhibitors having appropriate membrane permeability and low in vitro efflux.
Another aspect of the invention refers to pharmaceutical compositions, containing at least one compound according to formula (I) optionally together with one or more inert carriers and/or diluents.
A further aspect of the present invention refers to compounds according to formula (I), for the use in the prevention and/or treatment of disorders associated with QPCT/L inhibition.
Another aspect of the invention refers to processes of manufacture of the compounds of the present invention.
Further aspects of the present invention will become apparent to the skilled artisan directly from the foregoing and following description and the examples.
USED TERMS AND DEFINITIONS
General Definitions
Terms not specifically defined herein should be given the meanings that would be given to them by one of skill in the art in light of the disclosure and the context. As used in the specification, however, unless specified to the contrary, the following terms have the meaning indicated and the following conventions are adhered to.
In the groups, radicals, or moieties defined below, the number of carbon atoms is often specified preceding the group, for example, Ci-6-alkyl means an alkyl group or radical hav- ing 1 to 6 carbon atoms. In general in groups like HO, H2N, (O)S, (O)2S, NC (cyano), HOOC, F3C or the like, the skilled artisan can see the radical attachment point(s) to the molecule from the free valences of the group itself. For combined groups comprising two or more subgroups, the last named subgroup is the radical attachment point, for example, the substituent "aryl-C1-3-alkylene" means an aryl group which is bound to a C1-3-alkyl- group, the latter of which is bound to the core or to the group to which the substituent is at- tached.
In case a compound of the present invention is depicted in the form of a chemical name and as a formula, in case of any discrepancy the formula shall prevail. An asterisk may be used in sub-formulas to indicate the bond which is connected to the core molecule as de- fined.
The numeration of the atoms of a substituent starts with the atom which is closest to the core or to the group to which the substituent is attached.
For example, the term "3 -carb oxy propyl -group" represents the following substituent:
wherein the carboxy group is attached to the third carbon atom of the propyl group. The terms "1 -methylpropyl-", "2,2-dimethylpropyl-" or "cyclopropylmethyl-" group represent the following groups:
The asterisk may be used in sub-formulas to indicate the bond which is connected to the core molecule as defined.
The term "substituted" as used herein, means that one or more hydrogens on the designated atom are replaced by a group selected from a defined group of substituents, provided that the designated atom's normal valence is not exceeded, and that the substitution results in a stable compound. Likewise, the term “substituted” may be used in connection with a chemical moiety instead of a single atom, e.g. “substituted alkyl”, “substituted aryl” or the like.
Unless specifically indicated, throughout the specification and the appended claims, a given chemical formula or name shall encompass tautomers and all stereo, optical and geo- metrical isomers (e.g. enantiomers, diastereomers, E/Z isomers etc...) and racemates thereof as well as mixtures in different proportions of the separate enantiomers, mixtures of diastereomers, or mixtures of any of the foregoing forms where such isomers and enantio- mers exist, as well as solvates thereof such as for instance hydrates.
Unless specifically indicated, also “pharmaceutically acceptable salts” as defined in more detail below shall encompass solvates thereof such as for instance hydrates.
In general, substantially pure stereoisomers can be obtained according to synthetic princi- ples known to a person skilled in the field, e.g. by separation of corresponding mixtures, by using stereochemically pure starting materials and/or by stereoselective synthesis. It is known in the art how to prepare optically active forms, such as by resolution of racemic forms or by synthesis, e.g. starting from optically active starting materials and/or by using chiral reagents.
Enantiomerically pure compounds of this invention or intermediates may be prepared via asymmetric synthesis, for example by preparation and subsequent separation of appropriate diastereomeric compounds or intermediates which can be separated by known methods (e.g. by chromatographic separation or crystallization) and/or by using chiral reagents, such as chiral starting materials, chiral catalysts or chiral auxiliaries.
Further, it is known to the person skilled in the art how to prepare enantiomerically pure compounds from the corresponding racemic mixtures, such as by chromatographic separa- tion of the corresponding racemic mixtures on chiral stationary phases; or by resolution of a racemic mixture using an appropriate resolving agent, e.g. by means of diastereomeric salt formation of the racemic compound with optically active acids or bases, subsequent resolution of the salts and release of the desired compound from the salt; or by derivatiza- tion of the corresponding racemic compounds with optically active chiral auxiliary rea- gents, subsequent diastereomer separation and removal of the chiral auxiliary group; or by kinetic resolution of a racemate (e.g. by enzymatic resolution); by enantioselective crystal- lization from a conglomerate of enantiomorphous crystals under suitable conditions; or by (fractional) crystallization from a suitable solvent in the presence of an optically active chi- ral auxiliary.
The phrase "pharmaceutically acceptable" is employed herein to refer to those compounds, materials, compositions, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings without excessive toxicity, irritation, allergic response, or other problem or complication, and commensurate with a reasonable benefit/risk ratio.
As used herein, "pharmaceutically acceptable salt" refers to derivatives of the disclosed compounds wherein the parent compound is modified by making acid or base salts thereof. Examples of pharmaceutically acceptable salts include, but are not limited to, mineral or organic acid salts of basic residues such as amines; alkali or organic salts of acidic residues such as carboxylic acids; and the like.
For example, such salts include salts from benzenesulfonic acid, benzoic acid, citric acid, ethanesulfonic acid, fumaric acid, gentisic acid, hydrobromic acid, hydrochloric acid, ma- leic acid, malic acid, malonic acid, mandelic acid, methanesulfonic acid, 4-methyl-ben- zenesulfonic acid, phosphoric acid, salicylic acid, succinic acid, sulfuric acid and tartaric acid. Further pharmaceutically acceptable salts can be formed with cations from ammonia, L-arginine, calcium, 2,2’-iminobisethanol, L-lysine, magnesium, A-methyl-D-glucamine , potassium, sodium and tris(hydroxymethyl)-aminomethane.
The pharmaceutically acceptable salts of the present invention can be synthesized from the parent compound which contains a basic or acidic moiety by conventional chemical meth- ods. Generally, such salts can be prepared by reacting the free acid or base forms of these compounds with a sufficient amount of the appropriate base or acid in water or in an or- ganic diluent such as ether, ethyl acetate, ethanol, isopropanol, or acetonitrile, or a mixture thereof.
Salts of other acids than those mentioned above which for example are useful for purifying or isolating the compounds of the present invention (e.g. trifluoro acetate salts,) also com- prise a part of the invention.
The term halogen denotes fluorine, chlorine, bromine and iodine.
The term "Ci-n-alkyl", wherein n is an integer selected from 2, 3, 4, 5 or 6, preferably 4, 5, or 6, either alone or in combination with another radical, denotes an acyclic, saturated, branched or linear hydrocarbon radical with 1 to n C atoms. For example the term C1-5-al- kyl embraces the radicals H3C-, H3C-CH2-, H3C-CH2-CH2-, H3C-CH(CH3)-, H3C-CH2-CH2-CH2-, H3C-CH2-CH(CH3)-, H3C-CH(CH3)-CH2-, H3C-C(CH3)2-, H3C-CH2-CH2-CH2-CH2-, H3C-CH2-CH2-CH(CH3)-, H3C-CH2-CH(CH3)-CH2-, H3C-CH(CH3)-CH2-CH2-, H3C-CH2-C(CH3)2-, H3C-C(CH3)2-CH2-, H3C-CH(C H3)-CH(CH3)- and H3C-CH2-CH(CH2CH3)-.
The term "C3-k-cycloalkyl", wherein k is an integer selected from 3, 4, 5, 7 or 8, preferably 4, 5 or 6, either alone or in combination with another radical, denotes a cyclic, saturated, unbranched hydrocarbon radical with 3 to k C atoms. For example the term C3-7-cycloalkyl includes cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl and cycloheptyl.
The term "halo" added to an "alkyl", "alkylene" or "cycloalkyl" group (saturated or unsatu- rated) defines an alkyl, alkylene or cycloalkyl group wherein one or more hydrogen atoms are replaced by a halogen atom selected from among fluorine, chlorine or bromine, prefer- ably fluorine and chlorine, particularly preferred is fluorine. Examples include: H2FC-, HF2C-, F3C-.
The term "mono-heteroaryl ring" means a monocyclic aromatic ring system, containing one or more heteroatoms selected from N, O or S, consisting of 5 to 6 ring atoms.
The term "mono-heteroaryl ring" is intended to include all the possible isomeric forms.
Thus, the term "mono-heteroaryl ring" includes the following exemplary structures (not de- picted as radicals as each form is optionally attached through a covalent bond to any atom so long as appropriate valences are maintained):
The term "fused bicyclic-heteroaryl ring" means a bicyclic aromatic ring system, contain- ing one or more heteroatoms selected from N, O or S, consisting of 9 to 10 ring atoms. The term "fused bicyclic-heteroaryl ring" is intended to include all the possible isomeric forms. Thus, the term "bicyclic-heteroaryl ring" includes the following exemplary structures (not depicted as radicals as each form is optionally attached through a covalent bond to any atom so long as appropriate valences are maintained):
The term phenyl refers to the radical of the following ring:
The term pyridyl refers to the radical of the following ring:
The term pyridazinyl refers to the radical of the following ring:
The term pyrimidyl refers to the radical of the following ring:
The term pyrazolyl refers to the radical of the following ring:
The term thiazolyl refers to the radical of the following ring:
The term oxazolyl refers to the radical of the following ring:
Many of the terms given above may be used repeatedly in the definition of a formula or group and in each case have one of the meanings given above, independently of one an- other.
BIOLOGICAL ASSAYS
Evaluation of inhibitory activity on QPCT and QPCTL
Assay A: Biochemical QPCT and QPCTL Activity Assay
The activity of the compounds of the invention may be demonstrated using the following biochemical enzyme activity assay:
QPCT or QPCTL dependent conversion of N-terminal glutamine to pyroglutamate of CD47 was monitored via MALDI-TOF MS. Test compounds were dissolved in 100 % DMSO and serially diluted into clear 1,536-well microtiter plates. Enzymatic reactions were set up in assay buffer containing 20 mM Tris pH 7.5, 0.1 mM TCEP, 0.01% BSA, and 0.001% Tween20. 2.5 pL of 2x concentrated QPCTL (in-house) or QPCT (Origine #TP700028) enzyme in assay buffer (0.5 nM final concentration, columns 1-23) or plain assay buffer (columns 24) were added to each well. The plates were incubated for 10 min in a humidified incubator at 24°C. Subsequently, 2.5 pL of CD47 peptide substrate surro- gate (19QLLFNKTKSVEFTFC33) was added to each well (final concentration: 10 μM for QPCTL / 20 μM for QPCT). The plates were mixed for 30 sec at 1,000 rpm and subse- quently incubated for 40 min in a humidified incubator at 24°C. After incubation, the enzy- matic reaction was stopped by adding 1 pL containing stable isotope labeled internal stand- ard peptide 19[Pyr]LLFN(K)TKSVEFTFC33 (final concentration 4.0 μM) as well as SEN177 (final concentration 10 μM). The plates were sealed with an adhesive foil, mixed for 30 s at 1,000 rpm and stored at room temperature until preparation of the MALDI tar- get plates. MALDI target plates were prepared as described previously.1 Mass spectra were acquired with a rapifleX MALDI-TOF/TOF instrument tracking the signals of the product (19[Pyr]LLFNKTKSVEFTFC33, m/z 1,787.9037) as well as internal standard (19[Pyr]LLFN(K)TKSVEFTFC33, m/z 1,795.9179) peptide. QPCT or QPCTL activity was
monitored by calculating the ratio between product and internal standard signals followed by normalization to high (100% activity) and low (0% activity) controls. Determination of compound potencies was obtained by fitting the dose-response data to a four-parameter lo- gistical equation.
Table 2: Biological data for compounds of the invention as obtained in Assay A.
Table 3: Biological data for prior art compounds as obtained in Assay A.
Assay B: SIRPa signalling assay (using either Raji or A549 cells)
The activity of the compounds of the invention may be demonstrated using the following SIRPa signalling assay that measures SIRPa engagement induced by CD47 presented via cell-cell interaction. Two cell types are independently used: the Raji cell line (lymphoblast- like human cell line derived from B lymphocytes from a Burkitt’s lymphoma patient in 1963) and A549 cells (adenocarcinomic human alveolar basal epithelial cells).
Test compounds were dissolved in 100 % DMSO and serially diluted into a white 384-well microtiter cell culture plate (PerkinElmer #60076780 in case of Raji assay; PDL-coated plates Greiner #781945 in case of A549 assay). 5000 Raji cells (ATCC #CC86) or 5000 A549 cells (ATCC #CCL-185) in Assay Complete Cell Plating reagent 30 (DiscoverX 93- 0563R30B) were added per well. The assay plate was incubated for 48 h at 37 °C, 95% humidity and 5 % CO2. 15000 reporter cells (Jurkat PathHunter SIRPaVl, DiscoverX #93- 1135C19) were added to each well, and the plate was incubated for 5 h at 37 °C, 95 % humidity and 5 % CO2. Bioassay reagent 1 of the PathHunter Bioassay detection kit (Dis- coverX 93-0001) was added to each well of the plate using a multichannel pipette followed by a 15 min incubation at room temperature. Afterwards bioassay reagent 2 was added fol- lowed by 60 min incubation at room temperature (incubation in the dark).
The analysis of the data was performed using the luminescence signal generated by beta- galactosidase in the PathHunter reporter cell line. The luminescence measurement was done using a Pherastar Multi-Mode Reader. Dose-response curves & IC50 data were calculated with 4-parameter sigmoidal dose response formula.
Table 4: Biological data for compounds of the invention as obtained in Assay B.
Table 5: Biological data for prior art compounds as obtained in Assay B.
Evaluation of permeability
Assay C: Permeability in CACO-2 cells
Caco-2 cells (1 - 2 x 105 cells/1 cm2 area) are seeded on filter inserts (Costar transwell pol- ycarbonate or PET filters, 0.4 μm pore size) and cultured (DMEM) for 10 to 25 days.
Compounds are dissolved in appropriate solvent (like DMSO, 1 - 20 mM stock solutions). Stock solutions are diluted with HTP-4 buffer (128.13 mM NaCl, 5.36 mM KC1, 1 mM MgSO4, 1.8 mM CaCl2, 4.17 mM NaHCO3, 1.19 mM Na2HPO4 x 7H2O, 0.41 mM NaH2PO4xH2O, 15 mM HEPES, 20 mM glucose, 0.25% BSA, pH 7.2) to prepare the transport solutions (0.1 - 300 μM compound, final DMSO <= 0.5 %). The transport solution (TL) is applied to the apical or basolateral donor side for measuring A-B or B-A permeability (3 filter replicates), respectively. Samples are collected at the start and end of experiment from the donor and at various time intervals for up to 2 hours also from the receiver side for concentration measurement by HPLC-MS/MS or scintillation counting. Sampled receiver volumes are replaced with fresh receiver solution.
Efflux ratio (ER) = permeability B-A / permeability A-B
Table 7: Biological data for compounds of the invention as obtained in Assay C.
Table 8: Biological data for prior art compounds as obtained in Assay C.
Evaluation of CYP3A4 induction
Assay D: CYP induction screening assay in primary human hepatocytes
Cryopreserved plateable human hepatocytes (single donor, BioIVT) were thawed and plated in Collagen-I coated 96-well-plates at a cell density of 0.07 million cells per well. After a 6h attachment period, the seeding medium was replaced by serum-free William’s medium E supplemented with Matrigel (0.25 mg/ml) and allowed to recover overnight. 24h post-seeding, serum-free Williams E medium containing the test compound at a final concentration of 10 μM and a final DMSO content of 0.1% and 0.1% DMSO (solvent- treated control), respectively, was added to predefined wells. Exposure solutions were re- newed after 24h.
After 48h of treatment in total, the effect of the test compounds on CYP3 A4 mRNA ex- pression was assessed using the QuantiGene Plex Gene Expression Assay. Hepatocytes were lysed and total RNA was extracted using the QuantiGene Sample Processing Kit ac- cording to the instructions of the manufacturer. mRNA quantification was conducted using a customized QuantiGene Plex Panel to ana- lyse CYP3A4 and the housekeeper genes RPL32, EIF4E2 and GUSB according to the
instructions of the manufacturer and measured on a Luminex™ instrument. Signal was re- ported as median fluorescence intensity (MFI), which is proportional to the number of tar- get RNA molecules present in the sample. For calculation of CYP3A4 mRNA induction, the signal for CYP3A4 was normalized against the geometric mean of the signal obtained for the housekeeper genes for hepato- cytes exposed to test compounds in relation to solvent-treated samples according to the fol- lowing equation: n-fold induction = (MFI CYP3 A4 (treated) / Xgeo MFI (RPL32,EIF4E2,GUSB)) /(MFI
CYP3 A4 (solvent control) / Xgeo MFI (RPL32,EIF4E2,GUSB))
Table 9: Biological data for compounds of the invention as obtained in Assay D.
Table 10: Biological data for prior art compounds as obtained in Assay D.
Evaluation of hepatic stability (mouse)
Assay E: Stability in murine hepatocytes
The metabolic degradation of the test compound is assayed in a murine hepatocyte suspen- sion.
Murine hepatocytes (typically cryopreserved) are incubated in an appropriate buffer system (e.g. Dulbecco's modified eagle medium plus 3.5pg glucagon/500mL, 2.5mg insu- lin/500mL and 3.75mg/500mL hydrocorti son) containing 5% species serum.
Following a (typically) 30 min preincubation in an incubator (37°C, 10% CO2) 5 pl of test compound solution (80 μM; from 2mM in DMSO stock solution diluted 1 :25 with me- dium) are added into 395 pl hepatocyte suspension (cell density in the range 0.25-5 Mio cells/mL, typically 1 Mio cells/mL; final concentration of test compound IμM, final DMSO concentration 0.05%).
The cells are incubated for six hours (incubator, orbital shaker) and samples (25 pl) are taken at 0, 0.5, 1, 2, 4 and 6 hours. Samples are transferred into acetonitrile and pelleted by centrifugation (5 min). The supernatant is transferred to a new 96-deepwell plate, evapo- rated under nitrogen and resuspended.
Decline of parent compound is analyzed by HPLC-MS/MS
CLint is calculated as follows CL INTRINSIC = Dose / AUC = (C0/CD) / (AUD + clast/k) x 1000/60. CO: initial concentration in the incubation [μM], CD: cell density of
vital cells [10e6cells/mL], AUD: area under the data [μM x h], clast: concentration of last data point [μM], k: slope of the regression line for parent decline [h-1 ] .
The calculated in vitro hepatic intrinsic clearance can be scaled up to the intrinsic in vivo hepatic Clearance and used to predict hepatic in vivo blood clearance (CL) by the use of a liver model (well stirred model).
CL INTRINSIC INVIVO [ml/min/kg] = (CL INTRINSIC [pL/min/10e6cells] x hepato- cellularity [10e6 cells/g liver] x liver factor [g/kg bodyweight]) / 1000
CL [ml/min/kg] = CL INTRINSIC INVIVO [ml/min/kg] x hepatic blood flow [ml/min/kg] / (CL INTRINSIC INVIVO [ml/min/kg] + hepatic blood flow [ml/min/kg]) QH [%] = CL [ml/min/kg] / hepatic blood flow [ml/min/kg])
Hepatocellularity, mouse: 120xl0e6 cells / g liver
Liver factor, mouse: 55 g / kg bodyweight
Blood flow, mouse: 90 ml/(min x kg)
Table 12: Biological data for compounds of the invention as obtained in Assay E.
Table 13: Biological data for prior art compounds as obtained in Assay E.
Evaluation of Microsomal Clearance
Microsomal clearance:
The metabolic degradation of the test compound was assayed at 37 °C with pooled liver microsomes from various species. The final incubation volume of 60 pl per time point con- tains TRIS buffer pH 7.6 at room temperature (0.1 M), magnesium chloride (5 mM), micro- somal protein (1 mg/mL for human and dog, 0.5 mg/mL for other species) and the test com- pound at a final concentration of 1 μM. Following a short preincubation period at 37°C, the reactions were initiated by addition of betanicotinamide adenine dinucleotide phosphate, re- duced form (NADPH, 1 mM), and terminated by transferring an aliquot into solvent after different time points. After centrifugation (10000 g, 5 min), an aliquot of the supernatant was assayed by LC-MS/MS for the amount of parent compound. The half-life was deter- mined by the slope of the semi-logarithmic plot of the concentration-time profile.
The intrinsic clearance (CL INTRINSIC) is calculated by considering the amount of pro- tein in the incubation:
CL INTRINSIC [pl/min/mg protein] = (Ln 2 / (half-life [min] * protein content [mg/ml])) * 1000
CL INTRINSIC INVIVO [ml/min/kg] = (CL INTRINSIC [pL/min/mg protein] x MPPGL [mg protein/g liver] x liver factor [g/kg body weight]) / 1000 Qh [%] = CL [ml/min/kg] / hepatic blood flow [ml/min/kg]) Hepatocellularity, human: 120xl0e6 cells / g liver
Liver factor, human: 25.7 g / kg bodyweight
Blood flow, human: 21 ml/(min x kg)
Evaluation of Hepatocyte Clearance
Human Hepatocyte clearance
The metabolic degradation of a test compound is assayed in a human hepatocyte suspen- sion. After recovery from cry opreservation, human hepatocytes are diluted in Dulbecco's modified eagle medium (supplemented with 3.5 pg glucagon/500 mL, 2.5 mg insulin/500 mL, 3.75 mg hydrocorti sone/500 mL, 5% human serum) to obtain a final cell density of LOxlO6 cells/mL.
Following a 30 minutes preincubation in a cell culture incubator (37 °C, 10 % CO2), test compound solution is spiked into the hepatocyte suspension, resulting in a final test com- pound concentration of 1 μM and a final DMSO concentration of 0.05 %.
The cell suspension is incubated at 37 °C (cell culture incubator, horizontal shaker) and samples are removed from the incubation after 0, 0.5, 1, 2, 4 and 6 hours. Samples are quenched with acetonitrile (containing internal standard) and pelleted by centrifugation. The supernatant is transferred to a 96-deepwell plate, and prepared for analysis of decline of parent compound by HPLC-MS/MS.
The percentage of remaining test compound is calculated using the peak area ratio (test compound/internal standard) of each incubation time point relative to the time point 0 peak area ratio. The log-transformed data are plotted versus incubation time, and the absolute value of the slope obtained by linear regression analysis is used to estimate in vitro half- life (T 1/2).
In vitro intrinsic clearance (CLint) is calculated from in vitro Tl/2 and scaled to whole liver using a hepatocellularity of 120x106 cells/g liver, a human liver per body weight of 25.7 g liver/kg as well as in vitro incubation parameters, applying the following equation:
CL INTRINSIC IN VIVO [mL/min/kg] = (CL INTRINSIC [pL/min/106 cells] x hepato- cellularity [106 cells/g liver] x liver factor [g/kg body weight]) / 1000
Hepatic in vivo blood clearance (CL) is predicted according to the well-stirred liver model considering an average liver blood flow (QH) of 20.7 mL/min/kg:
CL [mL/min/kg] = CL INTRINSIC IN VIVO [mL/min/kg] x hepatic blood flow [mL/min/kg] / (CL_INTRINSIC_IN VIVO [mL/min/kg] + hepatic blood flow [mL/min/kg])
Results are expressed as percentage of hepatic blood flow:
QH [%] = CL [mL/min/kg] / hepatic blood flow [mL/min/kg])
Evaluation of plasma protein binding
Equilibrium dialysis technique is used to determine the approximate in vitro fractional binding of test compounds to plasma proteins applying Dianorm Teflon dialysis cells (micro 0.2). Each dialysis cell consists of a donor and an acceptor chamber, separated by an ultrathin semipermeable membrane with a 5 kDa molecular weight cutoff. Stock solutions for each test compound are prepared in DMSO at 1 mM and serially diluted to obtain a final test concentration of 1 μM. The subsequent dialysis solutions are prepared in plasma (supplemented with NaEDTA as anticoagulant), and aliquots of 200 pl test compound dialysis solution in plasma are dispensed into the donor (plasma) chambers. Aliquots of 200 pl dialysis buffer (100 mM potassium phosphate, pH 7.4, supplemented with up to 4.7 % Dextran) are dispensed into the buffer (acceptor) chamber. Incubation is carried out for 2 hours under rotation at 37°C for establishing equilibrium.
At the end of the dialysis period, aliquots obtained from donor and acceptor chambers, respectively, are transferred into reaction tubes and processed for HPLC-MS/MS analysis.
Analyte concentrations are quantified in aliquots of samples by HPLC-MS/MS against calibration curves.
Percent bound is calculated using the formula:
%bound = (plasma concentration - buffer concentration/ plasma concentration) X 100
Evaluation of solubility
Saturated solutions are prepared in well plates (format depends on robot) by adding an ap- propriate volume of selected aqueous media (typically in the range of 0.25 - 1.5 ml) into each well which contains a known quantity of solid drug substance (typically in the range 0.5 - 5.0 mg). The wells are shaken or stirred for a predefined time period (typically in a range of 2 - 24 h) and then filtered using appropriate filter membranes (typically PTFE-fil- ters with 0.45 μm pore size). Filter absorption is avoided by discarding the first few drops of filtrate. The amount of dissolved drug substance is determined by UV spectroscopy. In addition, the pH of the aqueous saturated solution is measured using a glass-electrode pH meter.
Evaluation of Metabolism in human hepatocytes in vitro
The metabolic pathway of a test compound is investigated using primary human hepatocytes in suspension. After recovery from cryopreservation, human hepatocytes are incubated in Dulbecco's modified eagle medium containing 5% human serum and supplemented with 3.5 pg glucagon/500ml, 2.5mg insulin/500ml and 3.75mg/500ml hydrocortisone.
Following a 30 min preincubation in a cell culture incubator (37°C, 10% CO2), test com- pound solution is spiked into the hepatocyte suspension to obtain a final cell density of 1.0* 106 to 4.0* 106 cells/ml (depending on the metabolic turnover rate of the compound ob- served with primary human hepatocytes), a final test compound concentration of 10 μM, and a final DMSO concentration of 0.05%.
The cells are incubated for six hours in a cell culture incubator on a horizontal shaker, and samples are removed from the incubation after 0, 0.5, 1, 2, 4 or 6 hours, depending on the metabolic turnover rate. Samples are quenched with acetonitrile and pelleted by centrifuga- tion. The supernatant is transferred to a 96-deepwell plate, evaporated under nitrogen and resuspended prior to bioanalysis by liquid chromatography-high resolution mass spectrom- etry for identification of putative metabolites.
The structures are assigned tentatively based on Fourier-Transform-MSn data. Metabolites are reported as percentage of the parent in human hepatocyte incubation with a threshold of > 4%.
Evaluation of pharmacokinetic characteristics
The test compound is administered either intravenously or orally to the respective test spe- cies. Blood samples are taken at several time points post application of the test compound, anticoagulated and centrifuged.
The concentration of analytes - the administered compound and/or metabolites - are quanti- fied in the plasma samples. PK parameters are calculated using non compartment methods. AUC and Cmax are normalized to a dose of 1 μmol/kg.
METHOD OF TREATMENT
The present invention is directed to compounds of general formula (I) which are useful in the prevention and/or treatment of a disease and/or condition associated with or modulated by QPCT/L activity, including but not limited to the treatment and/or prevention of cancer, fibrotic diseases, neurodegenerative diseases, atherosclerosis, infectious diseases, chronic kidney diseases.
The compounds of general formula (I) are useful for the prevention and/or treatment of: (1) Pulmonary fibrotic diseases such as pneumonitis or interstitial pneumonitis associated with collagenosis, e g. lupus erythematodes, systemic scleroderma, rheumatoid arthritis, polymyositis and dermatomysitis, idiopathic interstitial pneumonias, such as pulmonary lung fibrosis (IPF), non-specific interstitial pneumonia, respiratory bronchiolitis associated interstitial lung disease, desquamative interstitial pneumonia, cryptogenic orgainizing pneumonia, acute interstitial pneumonia and lymphocytic interstitial pneumonia, lymangi- oleiomyomatosis, pulmonary alveolar proteinosis, Langerhan's cell histiocytosis, pleural parenchymal fibroelastosis, interstitial lung diseases of known cause, such as interstitial pneumonitis as a result of occupational exposures such as asbestosis, silicosis, miners lung (coal dust), farmers lung (hay and mould), Pidgeon fanciers lung (birds) or other occupa- tional airbourne triggers such as metal dust or mycobacteria, or as a result of treatment such as radiation, methotrexate, amiodarone, nitrofurantoin or chemotherapeutics, or for
granulomatous disease, such as granulomatosis with polyangitis, Churg-Strauss syndrome, sarcoidosis, hypersensitivity pneumonitis, or interstitial pneumonitis caused by different origins, e g. aspiration, inhalation of toxic gases, vapors, bronchitis or pneumonitis or inter- stitial pneumonitis caused by heart failure, X-rays, radiation, chemotherapy, M. boeck or sarcoidosis, granulomatosis, cystic fibrosis or mucoviscidosis, or alpha-I-antitrypsin defi- ciency.
(2) Other fibrotic diseases such as hepatic bridging fibrosis, liver cirrhosis, non-alcoholic steatohepatitis (NASH), atrial fibrosis, endomyocardial fibrosis, old myocardial infarction, glial scar, arterial stiffness, arthrofibrosis, Dupuytren's contracture, keloid, scleroderma/ systemic sclerosis, mediastinal fibrosis, myelotibrosis, Peyronie's disease, nephrogenic systemic fibrosis, retroperitoneal fibrosis, adhesive capsulitis; spontaneous acute exacerba- tions in pulmonary fibrosis and progressive pulmonary fibrosis or induced by infection, microaspiration, surgical lung biopsy, surgical resection, bronchoscopy (BAL, cryobi- opsy), air pollution, prior exacerbation and medications.
(3) Leukemia, acute myeloid leukemia (AML), acute promyelocytic leukemia (APL), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), T-cell acute lym- phoblastic leukemia (T-ALL), lymphoma, B-cell lymphoma, T-cell lymphoma, Hodgkin’s disease, non-Hodgkin’s lymphoma (NHL), hairy cell lymphoma, Burkett’s lymphoma, multiple myeloma (MM), myelodysplastic syndrome, solid cancer, lung cancer, adenocar- cinoma, small cell lung cancer (SCLC), non-small cell lung cancer (NSCLC), mediastinum cancer, peritoneal cancer, mesothelioma, gastrointestinal cancer, gastric cancer, stomach cancer, bowel cancer, small bowel cancer, large bowel cancer, colon cancer, colon adeno- carcinoma, colon adenoma, rectal cancer, colorectal cancer, leiomyosarcoma, breast can- cer, gynaecological cancer, genito-urinary cancer, ovarian cancer, endometrial cancer, cer- vical cancer, prostate cancer, testicular cancer, seminoma, teratocarcinoma, liver cancer, kidney cancer, bladder cancer, urothelial cancer, biliary tract cancer, pancreatic cancer, ex- ocrine pancreatic carcinoma, esophageal cancer, nasopharyngeal cancer, head and neck squamous cell carcinoma (HNSCC), skin cancer, squamous cancer, squamous cell carci- noma, Kaposi's sarcoma, melanoma, malignant melanoma, xeroderma pigmentosum, kera- toacanthoma, bone cancer, bone sarcoma, osteosarcoma, rhabdomyosarcoma, fibrosar- coma, thyroid gland cancer, thyroid follicular cancer, adrenal gland cancer, nervous system cancer, brain cancer, astrocytoma, neuroblastoma, glioma, schwannoma, glioblastoma, or sarcoma, gastrointestinal cancer, gastric cancer, stomach cancer, esophageal cancer, head
and neck squamous cell carcinoma (HNSCC), breast cancer, colorectal cancer, bowel can- cer, large bowel cancer, colon cancer, colon adenocarcinoma, colon adenoma, rectal can- cer, ovarian cancer, pancreatic cancer, exocrine pancreatic carcinoma, leukemia, acute my- eloid leukemia (AML), myelodysplastic syndrome, lymphoma, B-cell lymphoma, non- Hodgkin’s lymphoma (NHL), urothelial cancer, or peritoneal cancer.
(4) Inflammatory, auto-immune or allergic diseases and conditions such as asthma, pediat- ric asthma, allergic bronchitis, alveolitis, hyperreactive airways, allergic conjunctivitis, bronchiectasis, adult respiratory distress syndrome, bronchial and pulmonary edema, bron- chitis or pneumonitis, non-allergic asthma, chronic obstructive pulmonary disease (COPD), acute bronchitis, chronic bronchitis, pulmonary emphysema; autoimmune diseases, such as rheumatoid arthritis, Graves’ disease, Sjogren's syndrome psoriatic arthritis, multiple scle- rosis, systemic lupus Erythematosus, inflammatory bowel diseases, such as Crohn's disease and ulcerative colitis, scleroderma; psoriasis (including T-cell mediated psoriasis) and in- flammatory dermatoses such as an dermatitis, eczema, atopic dermatitis, allergic contact dermatitis, urticaria; vasculitis (e g, necrotizing, cutaneous, and hypersensitivity vasculitis), or erythemanodosum.
(5) Neurodegenerative disorders such as amyotrophic lateral sclerosis, multiple sclerosis, Parkinson's disease, Alzheimer's disease, Huntington's disease, multiple system atrophy, or prion diseases.
Accordingly, the present invention relates to a compound of general formula (I) or a phar- maceutically acceptable salt thereof for use as a medicament.
Furthermore, the present invention relates to the use of a compound of general formula (I) for the treatment and/or prevention of a disease and/or condition associated with or modu- lated by QPCT/L activity.
Furthermore, the present invention relates to the use of a compound of general formula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof for the treatment and/or prevention of cancer, fibrotic diseases, neurodegenerative diseases, atherosclerosis, infectious diseases, chronic kidney diseases.
Furthermore, the present invention relates to the use of a compound of general formula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof for the treatment and/or prevention of: (1) Pulmonary fibrotic diseases such as pneumonitis or interstitial pneumonitis associated with collagenosis, e g. lupus erythematodes, systemic scleroderma, rheumatoid arthritis, polymyositis and dermatomy sitis, idiopathic interstitial pneumonias, such as pulmonary lung fibrosis (IPF), non-specific interstitial pneumonia, respiratory bronchiolitis associated interstitial lung disease, desquamative interstitial pneu- monia, cryptogenic orgainizing pneumonia, acute interstitial pneumonia and lymphocytic interstitial pneumonia, lymangioleiomyomatosis, pulmonary alveolar proteinosis, Langer- han's cell histiocytosis, pleural parenchymal fibroelastosis, interstitial lung diseases of known cause, such as interstitial pneumonitis as a result of occupational exposures such as asbestosis, silicosis, miners lung (coal dust), farmers lung (hay and mould), Pidgeon fanci- ers lung (birds) or other occupational airbourne triggers such as metal dust or mycobacte- ria, or as a result of treatment such as radiation, methotrexate, amiodarone, nitrofurantoin or chemotherapeutics, or for granulomatous disease, such as granulomatosis with polyangi- tis, Churg-Strauss syndrome, sarcoidosis, hypersensitivity pneumonitis, or interstitial pneu- monitis caused by different origins, e g. aspiration, inhalation of toxic gases, vapors, bron- chitis or pneumonitis or interstitial pneumonitis caused by heart failure, X-rays, radiation, chemotherapy, M. boeck or sarcoidosis, granulomatosis, cystic fibrosis or mucoviscidosis, or alpha-I-antitrypsin deficiency.
(2) Other fibrotic diseases such as hepatic bridging fibrosis, liver cirrhosis, non-alcoholic steatohepatitis (NASH), atrial fibrosis, endomyocardial fibrosis, old myocardial infarction, glial scar, arterial stiffness, arthrofibrosis, Dupuytren's contracture, keloid, scleroderma/ systemic sclerosis, mediastinal fibrosis, myelotibrosis, Peyronie's disease, nephrogenic systemic fibrosis, retroperitoneal fibrosis, adhesive capsulitis; spontaneous acute exacerba- tions in pulmonary fibrosis and progressive pulmonary fibrosis or induced by infection, microaspiration, surgical lung biopsy, surgical resection, bronchoscopy (BAL, cryobi- opsy), air pollution, prior exacerbation and medications.
(3) Leukemia, acute myeloid leukemia (AML), acute promyelocytic leukemia (APL), chronic myeloid leukemia (CML), acute lymphoblastic leukemia (ALL), T-cell acute lym- phoblastic leukemia (T-ALL), lymphoma, B-cell lymphoma, T-cell lymphoma, Hodgkin’s disease, non-Hodgkin’s lymphoma (NHL), hairy cell lymphoma, Burkett’s lymphoma, multiple myeloma (MM), myelodysplastic syndrome, solid cancer, lung cancer,
adenocarcinoma, small cell lung cancer (SCLC), non-small cell lung cancer (NSCLC), me- diastinum cancer, peritoneal cancer, mesothelioma, gastrointestinal cancer, gastric cancer, stomach cancer, bowel cancer, small bowel cancer, large bowel cancer, colon cancer, colon adenocarcinoma, colon adenoma, rectal cancer, colorectal cancer, leiomyosarcoma, breast cancer, gynaecological cancer, genito-urinary cancer, ovarian cancer, endometrial cancer, cervical cancer, prostate cancer, testicular cancer, seminoma, teratocarcinoma, liver cancer, kidney cancer, bladder cancer, urothelial cancer, biliary tract cancer, pancreatic cancer, ex- ocrine pancreatic carcinoma, esophageal cancer, nasopharyngeal cancer, head and neck squamous cell carcinoma (HNSCC), skin cancer, squamous cancer, squamous cell carci- noma, Kaposi's sarcoma, melanoma, malignant melanoma, xeroderma pigmentosum, kera- toacanthoma, bone cancer, bone sarcoma, osteosarcoma, rhabdomyosarcoma, fibrosar- coma, thyroid gland cancer, thyroid follicular cancer, adrenal gland cancer, nervous system cancer, brain cancer, astrocytoma, neuroblastoma, glioma, schwannoma, glioblastoma, or sarcoma, gastrointestinal cancer, gastric cancer, stomach cancer, esophageal cancer, head and neck squamous cell carcinoma (HNSCC), breast cancer, colorectal cancer, bowel can- cer, large bowel cancer, colon cancer, colon adenocarcinoma, colon adenoma, rectal can- cer, ovarian cancer, pancreatic cancer, exocrine pancreatic carcinoma, leukemia, acute my- eloid leukemia (AML), myelodysplastic syndrome, lymphoma, B-cell lymphoma, non- Hodgkin’s lymphoma (NHL), urothelial cancer, or peritoneal cancer.
(4) Inflammatory, auto-immune or allergic diseases and conditions such as asthma, pediat- ric asthma, allergic bronchitis, alveolitis, hyperreactive airways, allergic conjunctivitis, bronchiectasis, adult respiratory distress syndrome, bronchial and pulmonary edema, bron- chitis or pneumonitis, non-allergic asthma, chronic obstructive pulmonary disease (COPD), acute bronchitis, chronic bronchitis, pulmonary emphysema; autoimmune diseases, such as rheumatoid arthritis, Graves’ disease, Sjogren's syndrome psoriatic arthritis, multiple scle- rosis, systemic lupus Erythematosus, inflammatory bowel diseases, such as Crohn's disease and ulcerative colitis, scleroderma; psoriasis (including T-cell mediated psoriasis) and in- flammatory dermatoses such as an dermatitis, eczema, atopic dermatitis, allergic contact dermatitis, urticaria; vasculitis (e g, necrotizing, cutaneous, and hypersensitivity vasculitis), or erythemanodosum.
(5) Neurodegenerative disorders such as amyotrophic lateral sclerosis, multiple sclerosis, Parkinson's disease, Alzheimer's disease, Huntington's disease, multiple system atrophy, or prion diseases.
In a further aspect the present invention relates to a compound of general formula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof for use in the treatment and/or prevention of above-mentioned diseases and conditions.
In a further aspect the present invention relates to the use of a compound of general for- mula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof for the preparation of a medicament for the treatment and/or prevention of above- mentioned diseases and conditions.
In a further aspect of the present invention the present invention relates to methods for the treatment or prevention of above-mentioned diseases and conditions, which method com- prises the administration of an effective amount of a compound of general formula (I) or a pharmaceutically acceptable salt thereof or a pharmaceutical composition thereof to a hu- man being.
COMBINATION THERAPY
The compounds of the invention may further be combined with one or more, preferably one additional therapeutic agent. According to one embodiment the additional therapeutic agent is selected from the group of therapeutic agents useful in the treatment of diseases or conditions described hereinbefore, in particular associated with cancer, fibrotic diseases, Alzheimer’s diseases, atherosclerosis, infectious diseases, chronic kidney diseases and auto-immune disease.
Additional therapeutic agents that are suitable for such combinations include in particular those, which, for example, potentiate the therapeutic effect of one or more active sub- stances with respect to one of the indications mentioned and/or allow the dosage of one or more active substances to be reduced.
Therefore, a compound of the invention may be combined with one or more additional therapeutic agents selected from the group consisting of chemotherapy, targeted cancer therapy, cancer immunotherapy, irradiation, antifibrotic agents, anti-tussive agents, anti- inflammatory agents, anti-atopic dermatitis, and broncho dilators.
Chemotherapy is a type of cancer therapy that uses one or more chemical anti-cancer drugs, such as cytostatic or cytotoxic substances, cell proliferation inhibitors, anti-angio- genic substances and the like. Examples include folic acid (Leucovorin), 5-Fluorouracil, Irinotecan, Oxaliplatin, cis-platin Azacytidine, gemcitabine, alkylation agents, antimitotic agents, taxanes and further state-of-the-art or standard-of-care compounds.
Targeted therapy is a type of cancer treatment that uses drugs to target specific genes and proteins that help cancer cells survive and grow. Targeted therapy includes agents such as inhibitors of growth factors (e.g. platelet derived growth factor (PDGF), fibroblast growth factor (FGF), vascular endothelial growth factor (VEGF), epidermal growth factor (EGF), insulin-like growth factors (IGF), human epidermal growth factor (HER, e.g. HER2, HER3, HER4) and hepatocyte growth factor), tyrosine-kinases, KRAS, BRAF, BCR-ABL, mTOR, cyclin-dependent kinases, or MDM2.
Cancer immunotherapy is a type of therapy that uses substances to stimulate or suppress the immune system to help the body fight cancer. Cancer immunotherapy includes a thera- peutic antibody, such as: anti-Her2 antibody, an anti-EGFR antibody, and an anti-PDGFR antibody; an anti-GD2 (Ganglioside G2) antibody. Examples include Dinutuximab, Olara- tumab, Trastuzumab, Pertuzumab, Ertumaxomab, Cetuximab, Necitumumab, Nimotuzumab, Panitumumab, or rituximab. Cancer immunotherapy also includes a thera- peutic antibody which is a checkpoint inhibitor, such as an anti PD1, anti PD-L1 antibody or CTLA4 inhibitor. Examples include Atezolizumab, Avelumab, and Durvalumab, Ipili- mumab, nivolumab, or pembrolizumab. Cancer immunotherapy also includes agents which target (inhibit) the CD47-SIRPa signaling axis, such as agents which bind to CD47 or SIRPa. Non-limiting examples include antibodies such as anti-CD47 antibodies and anti- SIRPa antibodies, and recombinant Fc-fusion proteins such as CD47-Fc and SIRPa-Fc. Cancer immunotherapy also includes STING-targeting agent, or T cell engagers, such as blinatumomab.
Antifibrotic agents are for example nintedanib, pirfenidone, phosphodiesterase-IV (PDE4) inhibitors such as roflumilast or specific PDE4b inhibitors like BI 1015550, autotaxin in- hibitors such as GLPG-1690 or BBT-877; connective tissue growth factor (CTGF) block- ing antibodies such as Pamrevlumab; B-cell activating factor receptor (BAFF-R) blocking antibodies such as Lanalumab, alpha-V/beta-6 blocking inhibitors such as BG-00011/STX- 100, recombinant pentraxin-2 (PTX-2) such as PRM-151; c-Jun-N-terminal kinase (JNK)
inhibitors such as CC-90001; galectin-3 inhibitors such as TD-139; G-protein coupled re- ceptor 84 (GPR84) inhibitors ; G-protein coupled receptor 84/ G-protein coupled receptor 40 dual inhibitors such asPBI-4050, Rho Associated Coiled-Coil Containing Protein Ki- nase 2 (ROCK2) inhibitors such as KD-025, heat shock protein 47 (HSP47) small interfer- ing RNA such as BMS-986263/ND-L02-s0201; Wnt pathway inhibitor such as SM-04646; LD4/ PDE3/4 inhibitors such as Tipelukast; recombinant immuno-modulatory domains of histidyl tRNA synthetase(HARS) such as ATYR-1923, prostaglandin synthase inhibitors such as ZL-2102 /SAR-191801; 15-hydroxy-eicosapentaenoic acid (15-HEPE e.g. DS- 102); Lysyl Oxidase Like 2 (LOXL2) inhibitors such as PAT-1251, PXS-5382/PXS-5338; phosphoinositide 3-kinases (PI3K)/ mammalian target of rapamycin (mTOR) dual inhibi- tors such as EEC-68498; calpain inhibitors such as BLD-2660; mitogen-activated protein kinase kinase kinase (MAP3K19) inhibitors such as MG-S-2525; chitinase inhibitors such as OATD-01, mitogen-activated protein kinase-activated protein kinase 2 (MAPKAPK2) inhibitors such as MMI0100; transforming growth factor beta I (TGF-beta I) small inter- fering RNA such as TRKZSO/BNC-1021; or lysophosphatidic acid receptor antagonists such as BMS986278.
The dosage for the combination partners mentioned above is usually 1/5 of the lowest dose normally recommended up to 1/1 of the normally recommended dose.
Therefore, in another aspect, this invention relates to the use of a compound according to the invention in combination with one or more additional therapeutic agents described hereinbefore and hereinafter for the treatment of diseases or conditions which may be af- fected or which are mediated by QPCT/L, in particular diseases or conditions as described hereinbefore and hereinafter.
In a further aspect this invention relates to a method for treating a disease or condition which can be influenced by the inhibition of QPCT/L in a patient that includes the step of administering to the patient in need of such treatment a therapeutically effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof in combination with a therapeutically effective amount of one or more additional therapeutic agents.
In a further aspect this invention relates to the use of a compound of formula (I) or a phar- maceutically acceptable salt thereof in combination with one or more additional
therapeutic agents for the treatment of diseases or conditions which can be influenced by the inhibition of QPCT/L in a patient in need thereof.
In yet another aspect the present invention relates to a method for the treatment of a disease or condition mediated by QPCT/L activity in a patient that includes the step of administer- ing to the patient, preferably a human, in need of such treatment a therapeutically effective amount of a compound of the present invention in combination with a therapeutically ef- fective amount of one or more additional therapeutic agents described in hereinbefore and hereinafter.
The use of the compound according to the invention in combination with the additional therapeutic agent may take place simultaneously or at staggered times.
The compound according to the invention and the one or more additional therapeutic agents may both be present together in one formulation, for example a tablet or capsule, or separately in two identical or different formulations, for example as a so-called kit-of-parts.
Consequently, in another aspect, this invention relates to a pharmaceutical composition that comprises a compound according to the invention and one or more additional thera- peutic agents described hereinbefore and hereinafter, optionally together with one or more inert carriers and/or diluents.
Other features and advantages of the present invention will become apparent from the fol- lowing more detailed examples which illustrate, by way of example, the principles of the invention.
PREPARATION
The compounds according to the present invention and their intermediates may be obtained using methods of synthesis which are known to the one skilled in the art and described in the literature of organic synthesis. Preferably, the compounds are obtained in analogous fashion to the methods of preparation explained more fully hereinafter, in particular as de- scribed in the experimental section. In some cases, the order in carrying out the reaction
steps may be varied. Variants of the reaction methods that are known to the one skilled in the art but not described in detail here may also be used.
The general processes for preparing the compounds according to the invention will become apparent to the one skilled in the art studying the following schemes. Any functional groups in the starting materials or intermediates may be protected using conventional pro- tecting groups. These protecting groups may be cleaved again at a suitable stage within the reaction sequence using methods familiar to the one skilled in the art.
The compounds according to the invention are prepared by the methods of synthesis de- scribed hereinafter in which the substituents of the general formulae have the meanings given herein before. These methods are intended as an illustration of the invention without restricting its subject matter and the scope of the compounds claimed to these examples. Where the preparation of starting compounds is not described, they are commercially ob- tainable or may be prepared analogously to known compounds or methods described herein. Substances described in the literature are prepared according to the published meth- ods of synthesis. Abbreviations are as defined in the Examples section.
Examples may be prepared as shown in Scheme I below.
Scheme I:
In scheme I, N-Methyl triazolyl piperidine (A) undergo a nucleophilic aromatic substitu- tion with heteroaryl fluoride (X= Cl, Br) (B). The reaction can typically be run at ambient temperature or at elevated temperature (up to 110 °C) in the presence of a base (e.g. diiso- propylethylamine). The intermediate (C) is then subjected to a Suzuki-cross coupling with a hetero-aryl boronic acid derivative in the presence of a suitable catalyst (e.g.
Pd(dppf)C12) and a suitable base at elevated temperature (e.g. 100 °C) to afford compounds of general formula (I). The heteroaryl boronic acid derivatives are either commercially available or can be prepared by the corresponding heteroaryl bromides as described.
Compounds (D) can be prepared by reaction of piperidines (A) with fluoro-pyridonitriles (B) in the presence of a suitable base (e.g. diisopropylethylamine). The reaction can typi- cally be run at ambient temperature or at elevated temperature (up to 110 °C) in the pres- ence of a base (e.g. diisopropylethylamine). The intermediate (D) is then subjected to a Su- zuki-cross coupling with a hetero-aryl boronic acid derivative in the presence of a suitable catalyst (e.g. Pd(dtbpf)C12) and a suitable base at elevated temperature (e.g. 100 °C) to af- ford compounds of general formula (E). Examples 1-9, 13 and 14 can be obtained by Su- zuki-cross coupling with a fluoro-pyridine boronic acid derivative in the presence of a
suitable catalyst (e.g. Pd(dppf)C12) and a suitable base at elevated temperature (e.g. 100 °C) to afford examples 1-9, 13 and 14. Intermediates A may be prepared as shown in Scheme III below:
Scheme III:
Compounds of formula (A) can be prepared from the corresponding piperidinyl esters (F) equipped with a suitable protecting group (PG, e.g. BOC) by treatment with a suitable hy- drazine source (e.g. N2H4*H2O) at elevated temperature (e.g. 50 °C). The obtained hydra- zide (G) is then activated with DMF/DMA at elevated temperature (e.g. 50 °C) and subse- quently treated with methyl amine at elevated temperature (e.g. 90 °C) to yield the triazole derivative (H). Compounds of formula (A) can be obtained by cleaving the protecting group under suitable conditions (e.g. TFA).
Intermediates B may be prepared as shown in Scheme IV below:
Scheme IV:
Deprotonation of commercially available pyridines (J) at low temperature (e.g. -65 °C) and quenching with DMF yields the corresponding aldehydes (K). In case of R = CF3 or R=Br, aldehyde (K) can be transformed into the amide (L) using a suitable reagent, e.g. phenyltri- methylammonium tribromide, at ambient temperature. Compounds of formula (B) are sub- sequently obtained by treatment of (H) with a suitable dehydrating agent, e.g. Burgess rea- gent at ambient temperature.
EXAMPLES
Preparation
The compounds according to the invention and their intermediates may be obtained using methods of synthesis which are known to the one skilled in the art and described in the lit- erature of organic synthesis for example using methods described in “Comprehensive Or- ganic Transformations”, 2nd Edition, Richard C. Larock, John Wiley & Sons, 2010, and “March’s Advanced Organic Chemistry”, 7th Edition, Michael B. Smith, John Wiley & Sons, 2013. Preferably the compounds are obtained analogously to the methods of prepara- tion explained more fully hereinafter, in particular as described in the experimental section. In some cases the sequence adopted in carrying out the reaction schemes may be varied. Variants of these reactions that are known to the skilled artisan but are not described in de- tail herein may also be used. The general processes for preparing the compounds according to the invention will become apparent to the skilled man on studying the schemes that fol- low. Starting compounds are commercially available or may be prepared by methods that are described in the literature or herein, or may be prepared in an analogous or similar manner. Before the reaction is carried out, any corresponding functional groups in the starting compounds may be protected using conventional protecting groups. These protect- ing groups may be cleaved again at a suitable stage within the reaction sequence using methods familiar to the skilled man and described in the literature for example in “Protect- ing Groups”, 3rd Edition, Philip J. Kocienski, Thieme, 2005, and “Protective Groups in Organic Synthesis”, 4th Edition, Peter G. M. Wuts, Theodora W. Greene, John Wiley & Sons, 2006. The terms "ambient temperature" and "room temperature" are used inter- changeably and designate a temperature of about 20 °C, e.g. between 19 and 24 °C.
Abbreviations:
Preparation of intermediates
Synthesis of Intermediate 1.1
tert-Butyl 4-fluoro-4-(hydrazinecarbonyl)piperidine-l-carboxylate l -tert-Butyl 4-ethyl 4-fluoropiperidine-l,4-dicarboxylate (160 g, 0.58 mol) is suspended in ethanol (640 mL) in a round-bottom flask. Hydrazine hydrate (70.6 mL, 1.16 mol) is added to the mixture at ambient temperature. The reaction mixture is heated to 50 °C and stirred for 12 h. After cooling to ambient temperature, the mixture is concentrated under reduced pressure to yield tert-butyl 4-fluoro-4-(hydrazinecarbonyl)piperidine-l -carboxylate in 80% purity.
C1 1H20FN3O3 (M = 261.3 g/mol)
ESI-MS: 284 [M+Na]+
Rt (HPLC): 0.62 min (method A) tert-Butyl 4-fluoro-4-(4-methyl-4H-l,2,4-triazol-3-yl)piperidine-l-carboxylate tert-Butyl 4-fluoro-4-(hydrazinecarbonyl)piperidine-l -carboxylate (135 g, 0.413 mol, 80% purity) is mixed with dioxane (945 mL) in a round-bottom-flask. A -Dimethyl form ami d- dimethylacetal (137 mL, 1.03 mol) is added to the mixture at ambient temperature. The re- action mixture is heated to 50 °C and stirred for 1 h. A solution of methylamine (299 g, 30% in EtOH, 2.89 mol) and acetic acid (165 mL, 2.89 mol) are added into the mixture. The resulting reaction mixture is heated to 90 °C and stirred for 11 h. After cooling to ambient temperature, the mixture is concentrated under reduced pressure. The residue is purified by column chromatography (SiCL, PE/EtOAc gradient 20:1 to 0:1) to obtain tert-butyl 4-fluoro- 4-(4-methyl-4H- 1 ,2,4-triazol-3 -yl)piperidine- 1 -carboxylate.
C13H21FN4O2 (M=284.3 g/mol)
ESI-MS: 285 [M+H]+
Rt (HPLC): 0.77 min (method A)
Intermediate 1.1: 4-fluoro-4-(4-methyl-4H-l,2,4-triazol-3-yl)piperidine tert-Butyl 4-fluoro-4-(4-methyl-4H-l, 2, 4-triazol-3-yl)piperi dine- 1 -carboxylate (90 g, 0.32 mol) is combined with methanol (90 mL) in a round-bottom flask. A solution of HC1 (4 m in MeOH, 450 mL, 1.8 mol) is added slowly at ambient temperature. The resulting reaction mixture is stirred at ambient temperature for 12 h. The desired product is collected by filtra- tion, washed with methanol, and dried to yield 4-fluoro-4-(4-methyl-4H-l,2,4-triazol-3- yl)piperidine hydrochloride salt.
The hydrochloride salt (13.5 g) is added to a solution of ammonia in methanol (7 M, 150 mL) and purified by column chromatography (Biotage SNAP Cartridge KP-NH 110 g, gra- dient DCM/MeOH 4:1 to 7:3) to afford the title compound.
C8H13FN4 (M= 184.2 g/mol)
ESLMS: 185 [M+H]+
Rt (HPLC): 0.20 min (method B)
4-(4-Methyl-4H-l,2,4-triazol-3-yl)piperidine (MFCD09055373, CAS: 297172-18-0) is obtained from a commercial vendor.
Synthesis of Intermediate II.2
6-Bromo-2-chloro-3-fluoropyridine-4-carbaldehyde
Under an argon atmosphere, 6-bromo-2-chloro-3-fluoropyridine (6.80 g, 30.7 mmol) is added to THF (30 mL), and the resulting mixture is cooled to -75 °C. A solution of lithium diisopropylamide (1 M in THF, 30.7 mL, 30.7 mmol) is added dropwise, and the mixture is stirred for 1 h at -75 °C. DMF (2.83 mL, 36.8 mmol) is added dropwise. The mixture is stirred for additional 2 h at -78 °C. The reaction is quenched by addition of acetic acid (2.64 mL) and diluted with water/brine 1/1 and ethyl acetate and allowed to warm to ambient temperature. The organic phase is separated, dried over Na2SO4, and concentrated. The residue is purified by column chromatography (SiO2, CyH/EtOAc gradient 1 :0 to 1 : 1) to yield 6-bromo-2-chl oro-3 -fluoropyridine-4-carbaldehyde.
C6H2BrClFNO (M=238.4 g/mol)
ESIMS: mass not detected
Rt (HPLC): 0.44 min (method B)
6-Bromo-2-chloro-3-fluoropyridine-4-carboxamide
Ammonium acetate (12.0 g, 15.5 mmol) and 6-Bromo-2-chloro-3-fluoropyridine-4- carbaldehyde (3.70 g, 15.5 mmol) are mixed, and acetonitrile (50 mL) is added. Phenyltrimethylammonium tribromide (12.0 g, 31.0 mmol) is added in small portions, and the resulting reaction mixture is stirred for 16 h at ambient temperature. The mixture is filtered, and the residue is washed with acetonitrile, purified by column chromatography (dry load, SiO2, CyH/EtOAc gradient 1 :0 to 1 : 1) to yield the desired product.
C6H3BrClFN2O (M=253.5 g/mol)
ESLMS: 251 / 253 [M-H]"
Rt (HPLC): 0.41 min (method B)
Intermediate II.2: 6-Bromo-2-chloro-3-fluoropyridine-4-carbonitrile
6-Bromo-2-chloro-3-fluoropyridine-4-carboxamide (510 mg, 2.01 mmol) is suspended in dichloromethane (10 mL), and Burgess reagent (CAS: 29684-56-8, 742 mg, 3.02 mmol) is added at ambient temperature. The resulting reaction mixture is stirred for 16 h and then directly purified by column chromatography (SiO2, CyH/EtOAc gradient 1 :0 to 9: 1) to yield the title compound.
C6HBrClFN2 (M=235.4 g/mol)
ESLMS: no mass detected
Rt (HPLC): 0.61 min (method B)
'H NMR (400 MHz, DMSO-d 6) δ ppm 8.45 (d, J=3.8 Hz, 1 H).
Synthesis of Intermediate II.5
2-Chloro-3-fluoro-6-(trifluoromethyl)pyridine-4-carbaldehyde
Under an argon atmosphere, 2-chloro-3-fluoro-6-(trifluoromethyl)pyridine (14.2 g, 69.7 mmol) is added to THF (330 mL), and the resulting mixture is cooled to -75 °C. A solution of lithium diisopropylamide (1 M in THF, 77.0 mL, 77.0 mmol) is added dropwise in a period of 90 min, and the mixture is stirred for 60 min at -75 °C. DMF (6.44 mL, 83.7 mmol) is added dropwise. The mixture is stirred for additional 30 min at -75 °C. The reaction is quenched by addition of a half concentrated acetic acid (40 mL) and diluted with water and EtOAc. The organic phase is separated, washed with brine, dried, and concentrated. The residue is purified by column chromatography (SiCL, CyH/EtOAc gradient 100:0 to 85: 15) to yield the desired compound.
C7H2CIF4NO (M=227.5 g/mol)
ELMS: 227 M*+
Rt (HPLC): 0.48 min (method B)
2-Chloro-3-fluoro-6-(trifluoromethyl)pyridine-4-carboxamide
Ammonium acetate (47.1 g, 611 mmol) and 2-chloro-3-fluoro-6-(trifluoromethyl)pyridine- 4-carbaldehyde (13.9 g, 61.1 mmol) are mixed, and acetonitrile (300 mL) is added. Phenyltrimethylammonium tribromide (47.4 g, 122 mmol) is added in small portions, and the resulting reaction mixture is stirred at ambient temperature for 16 h. The mixture is filtered through a pad of silica, and the residue is washed with acetonitrile, purified by column chromatography (SiCL, CyH/EtOAc gradient 1 :0 to 7:3) to yield the desired product. C7H3CIF4N2O (M=242.6 g/mol)
ESI-MS: 241 [M-H]’
Rt (HPLC): 0.47 min (method B)
Intermediate II.5: 2-chloro-3-fluoro-6-(trifluoromethyl)pyridine-4-carbonitrile
The product of the previous step, 2-chl oro-3 -fluoro-6-(trifluoromethyl)pyridine-4- carboxamide (5.10 g, 21.0 mmol) is suspended in dichloromethane (400 mL), and Burgess reagent (CAS: 29684-56-8, 8.75 g, 35.6 mmol) is added at ambient temperature. The resulting reaction mixture is stirred for 40 h and then directly purified by column chromatography (SiO2, CyH/EtOAc gradient 100:0 to 95:5) to yield the title compound. C7HCIF4N2 (M=224.5 g/mol)
ESI-MS: 225 [M+H]+
Rt (HPLC): 0.57 min (method F)
Intermediate III.3: 6-bromo-2-chloro-3-[4-fluoro-4-(4-methyl-4H-l,2,4-triazol-3- yl)piperidin-l-yl]pyridine-4-carbonitrile
Int. II.2 (1.00 g, 4.25 mmol) is suspended in DMSO (4.0 mL) and DIPEA (1.47 mL, 8.50 mmol). At 15 °C, Int. 1.1 (900 mg, 4.89 mmol) is added, and the resulting mixture is stirred at 15 °C for 2 h. The mixture is diluted with ACN/water and purified by preparative HPLC (Sunfire C18, acetonitrile/water gradient containing 0.1% TFA) to afford the desired compound.
C14H13BrClFN6 (M=399.6 g/mol)
ESIMS: 399 / 401 [M+H]+
Rt (HPLC): 0.75 min (method G)
Intermediates synthesized analogous to the procedure described for Int. III.3
Synthesis of Intermediate IV.l
Int. IV.l To a mixture of 4-(tributylstannyl)thiazole (149 mg, 398 μmol) in toluene (2 mL) is added 5-bromo-2-fluoro-3-iodo-pyridine (100 mg, 331 μmol) and Pd(dppf)Cl2*CH2Cl2 (27 mg, 33.1 μmol). An argon stream is passed through the mixture for 5 min. The reaction mixture is stirred at 110 °C for 5 h. After cooling to ambient temperature, the mixture is concentrated and purified by preparative HPLC (XBridge C18, acetonitrile/water containing 0.1% NH3) to yield intermediate IV.1.
C8H4BrFN2S (M=259.1 g/mol)
ESI-MS: 259 / 261 [M+H]+
Rt (HPLC): 0.57 min (method F)
Intermediates synthesized analogous to the procedure described for Int. IV.1
Synthesis of Intermediate V.l:
2-chloro-3-[4-fluoro-4-(4-methyl-4H-l,2,4-triazol-3-yl)piperidin-l-yl]-6-(l-methyl-lH- pyrazol-4-yl)pyridine-4-carbonitrile
To a mixture of Int. III.3 (30.0 mg, 58.4 μmol), l-methyl-lH-pyrazole-4-boronic acid (8.1 mg, 64.2 mmol) and potassium carbonate (32.3 mg, 234 μmol) water (100 pL) and toluene. The resulting mixture is purged by passing an argon stream through the mixture for 10 min. Pd(dtbpf)Cl2 (1.0 mg, 1.5 μmol) is added, and the mixture is further purged for 5 min. The reaction mixture is stirred at 75 °C overnight. After cooling to ambient temperature, the mixture is diluted with dichloromethane and extracted with water. The organic extract is concentrated and purified by preparative HPLC (XB ridge C18 column, ACN/water gradient containing 0.1% NH3) to yield the title compound.
C18H18ClFN8 (M=400.8 g/mol)
ESI-MS: 401 [M+H]+
Rt (HPLC): 0.52 min (method B)
Intermediates synthesized analogous to the procedure described for Int. V.l
Preparation of final compounds
Example 1
To a mixture of Int. V.2 (12.0 mg, 28.9 μmol) and 2-fhroro-5-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)pyridine (9.9 mg, 43.4 μmol) in 1,4-dioxane (0.5 mL) is added potassium carbonate (2 M in water, 50.6 pL, 0.101 mmol). The resulting mixture is purged by passing an argon stream through the mixture. Pd(dppf)C12 (2.1 mg, 2.9 μmol) is added, and the mixture is further purged with argon for 5 min. The reaction mixture is stirred at 95 °C for 16 h. After cooling to ambient temperature, the mixture is diluted with an ACN/water mixture, filtered, and purified by preparative HPLC (Sunfire C18 column, ACN/water gradient containing 0.1% TFA) and repurified by preparative HPLC (XBridge C18 column, ACN/water gradient containing 0.1% NH3) to yield the title compound.
Examples synthesized analogous to the procedure described for Example 1
Synthesis of Example 10:
A mixture of Intermediate IV.1 (54.0 mg, 198 μmol), bis(pinacolato)diboron (101 mg, 396 μmol) and potassium acetate (97.2 mg, 990 μmol) in dioxane (2 mL) is degassed by passing an Ar stream for 5 min. Pd(dppf)C12 (14.5 mg, 19.8 μmol) is added and the reaction mixture is stirred for 15 h at 100 °C. After cooling to ambient temperature, an aqueous solution of sodium carbonate (2 M, 231.5 pL, 463 μmol) and Intermediate III.9 (60.0 mg, 1554 μmol) is added. The mixture is degassed by passing an Ar stream for 5 min. Pd(dppf)C12 (11.3 mg, 15.4 μmol) is added and the reaction mixture is stirred for 3 h at 100 °C. After cooling to ambient temperature, the reaction mixture is diluted with MeCN containing 0.1% TFA, filtered and purified by preparative HPLC (XB ridge C18, MeCN/water gradient containing 0.1% TFA) to yield the desired product.
Examples synthesized analogous to the procedure described for Example 10
Synthesis of Example 13:
To a mixture of Int III.3 (30.0 mg, 75.0 μmol) and 2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)pyridine (18.0 mg, 75.0 μmol) in dioxane (2.0 mL) is added an aqueous
solution of CS2CO3 (2 M, 150 pL, 300 μmol). The mixture is degassed by passing an Ar stream for 2 min. Pd(dppf)Cl2*CH2Cl2 (3.06 mg, 3.75 μmol) is added and the reaction mixture is stirred for 1 h at 60 °C. After cooling to ambient temperature, 2-fluoro-5-(4, 4,5,5- tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine (25.9 mg, 112.5 μmol) is added. The mixture is degassed by passing an Ar stream for 1 min. XPhos Pd G3 (1.8 mg, 3.75 μmol) is added and the resulting reaction mixture is stirred for 1 h at 90 °C. After cooling to ambient temperature, the reaction mixture is stirred overnight open to air and filtered. The filtrate is purified by preparative HPLC (XBridge C18, MeCN/water gradient containing 0.1% NH3) to yield the desired product.
Examples synthesized analogous to the procedure described for Example 13
Synthesis of Example 14:
To a mixture of Int III.3 (200.0 mg, 500 μmol) and 2-fluoro-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)pyridine (291 mg, 1.25 mmol) in dioxane (8.0 mL) is added an aqueous solution of Na2CO3 (2 M, 150 pL, 300 μmol). The mixture is degassed by passing an Ar stream for 2 min. Pd(dppf)Cl2*CH2Cl2 (12.3 mg, 15.0 μmol) is added and the reaction mixture is stirred for 5 h at 100 °C. After cooling to ambient temperature, the mixture is diluted with MeCN, filtered and purified by preparative HPLC (X-B ridge C18, MeCN/water gradient containing 0.1% NH3) to yield the title compound.
Analytical data of synthesized examples
Analytical HPLC methods
Method A
Analytical column: Kinetex EVO C18 2.1 x 30 mm_5 μm; column temperature: 40°C
Method B
Device description: Waters Acquity; Analytical column: XBridge (Waters) BEH C18 2.1 x 30 mm_2.5μm; column temperature: 60°C
Method C
Device description: Agilent 1200; Analytical column: Sunfire C18_3.0 x 30 mm_2.5μm; column temperature: 60°C
Method F
Device description: Waters Acquity; Analytical column: Xbridge (Waters) BEH C18 2.1 x 30 mm_1.7μm; column temperature: 60°C
Method G
Device description: Waters Acquity; Analytical column: Sunfire (Waters) C18_3.0 x 30 mm_2.5 μm; column temperature: 60°C
Method L
Device description: Waters Acquity; Analytical column: Xbridge (Waters) C18_3.0 x 30 mm_2.5 μm; column temperature: 60°C
Method M
Device description: Waters Acquity; Analytical column: Sunfire (Waters) C18_3.0 x 30 mm_2.5 μm; column temperature: 60°C
Method O
Device description: Waters Acquity; Analytical column: XBridge (Waters) C18_3.0 x 30 mm_2.5 μm; column temperature: 60 °C
Method P
Device description: Waters Acquity; Analytical column: Sunfire (Waters) C18_3.0 x 30 mm_2.5 μm; column temperature: 60°C
Claims
1. A compound of formula (I)
wherein
A is selected from the group consisting of
R1 is selected from the group consisting of
or a salt thereof, particularly a pharmaceutically acceptable salt thereof.
2. The compound of formula (I) according to claim 1, wherein R1 is H; or a salt thereof.
3. The compound of formula (I) according to any of claim 1 having formula (1-a)
or a salt thereof.
4. The compound of formula (I) according to claim 1, selected from the group consisting of
or a salt thereof.
5. A pharmaceutically acceptable salt of a compound according to one or more of claims 1 to 4.
6. A pharmaceutical composition comprising one or more compounds according to one or more of claims 1 to 4, or pharmaceutically acceptable salts thereof, optionally together with one or more inert carriers and/or diluents.
7. A pharmaceutical composition comprising one or more compounds according to one or more of the claims 1 to 4, or pharmaceutically acceptable salts thereof, and one or more additional therapeutic agents, optionally together with one or more inert carriers and/or diluents.
8. The pharmaceutical composition according to claim 7 wherein the one or more additional therapeutic agents are selected from the group consisting of anticancer agents and antifibrotic agents.
9. The compound according to one or more of claims 1 to 4 or a pharmaceutically acceptable salt thereof for use as a medicament.
10. A method for the treatment of diseases, such as cancer or fibrotic diseases, and conditions associated with these diseases, in a patient in need thereof, the method being characterized in that one or more compounds according to one or more of claims 1 to 4 or pharmaceutically acceptable salts thereof are administered to the patient.
11. A compound according to one or more of claims 1 to 4 or a pharmaceutically acceptable salt thereof for use in a method for the treatment of cancer, fibrotic diseases, neurodegenerative diseases, atherosclerosis, infectious diseases, or chronic kidney diseases.
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| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP24156129 | 2024-02-06 | ||
| EP24156129.9 | 2024-02-06 |
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| WO2025168424A1 true WO2025168424A1 (en) | 2025-08-14 |
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Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2023205173A1 (en) | 2022-04-20 | 2023-10-26 | Blacksmith Medicines, Inc. | Substituted piperidines and substituted tetrahydropyridines as immune-modulating compounds |
| WO2024020517A1 (en) | 2022-07-22 | 2024-01-25 | 858 Therapeutics, Inc. | 3-(6-pyridin-3-yl)-2-[4-(4-methyl-4h-1,2,4-triazol-3-yl)piperidin-1-yl]benzonitrile derivatives and similar compounds as qpctl and qpct inhibitors for the treatment of cancer |
| WO2024028245A1 (en) * | 2022-08-03 | 2024-02-08 | Boehringer Ingelheim International Gmbh | Piperidinylpyridinylcarbonitrile derivatives as inhibitors of glutaminyl-peptide cyclotransferase and glutaminyl-peptide cyclotransferase like protein |
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Patent Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2023205173A1 (en) | 2022-04-20 | 2023-10-26 | Blacksmith Medicines, Inc. | Substituted piperidines and substituted tetrahydropyridines as immune-modulating compounds |
| WO2024020517A1 (en) | 2022-07-22 | 2024-01-25 | 858 Therapeutics, Inc. | 3-(6-pyridin-3-yl)-2-[4-(4-methyl-4h-1,2,4-triazol-3-yl)piperidin-1-yl]benzonitrile derivatives and similar compounds as qpctl and qpct inhibitors for the treatment of cancer |
| WO2024028245A1 (en) * | 2022-08-03 | 2024-02-08 | Boehringer Ingelheim International Gmbh | Piperidinylpyridinylcarbonitrile derivatives as inhibitors of glutaminyl-peptide cyclotransferase and glutaminyl-peptide cyclotransferase like protein |
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