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WO2025160338A1 - Dispositifs, kits et procédés de traitement d'échantillons - Google Patents

Dispositifs, kits et procédés de traitement d'échantillons

Info

Publication number
WO2025160338A1
WO2025160338A1 PCT/US2025/012863 US2025012863W WO2025160338A1 WO 2025160338 A1 WO2025160338 A1 WO 2025160338A1 US 2025012863 W US2025012863 W US 2025012863W WO 2025160338 A1 WO2025160338 A1 WO 2025160338A1
Authority
WO
WIPO (PCT)
Prior art keywords
sample
substrate
fluid
patterned template
template layer
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
PCT/US2025/012863
Other languages
English (en)
Inventor
Kevin Matthew BYRD
Theresa M. WEAVER
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Ada Science And Research Institute LLC
Original Assignee
Ada Science And Research Institute LLC
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Ada Science And Research Institute LLC filed Critical Ada Science And Research Institute LLC
Publication of WO2025160338A1 publication Critical patent/WO2025160338A1/fr
Pending legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
    • G01N35/00029—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor provided with flat sample substrates, e.g. slides
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L3/00—Containers or dishes for laboratory use, e.g. laboratory glassware; Droppers
    • B01L3/50—Containers for the purpose of retaining a material to be analysed, e.g. test tubes
    • B01L3/502—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures
    • B01L3/5025—Containers for the purpose of retaining a material to be analysed, e.g. test tubes with fluid transport, e.g. in multi-compartment structures for parallel transport of multiple samples
    • B01L3/50255—Multi-well filtration
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2200/00—Solutions for specific problems relating to chemical or physical laboratory apparatus
    • B01L2200/02—Adapting objects or devices to another
    • B01L2200/025—Align devices or objects to ensure defined positions relative to each other
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/06—Auxiliary integrated devices, integrated components
    • B01L2300/0681—Filter
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/06—Auxiliary integrated devices, integrated components
    • B01L2300/069—Absorbents; Gels to retain a fluid
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/08—Geometry, shape and general structure
    • B01L2300/0809—Geometry, shape and general structure rectangular shaped
    • B01L2300/0816—Cards, e.g. flat sample carriers usually with flow in two horizontal directions
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/08—Geometry, shape and general structure
    • B01L2300/0887—Laminated structure
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/16—Surface properties and coatings
    • B01L2300/161—Control and use of surface tension forces, e.g. hydrophobic, hydrophilic
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2300/00—Additional constructional details
    • B01L2300/16—Surface properties and coatings
    • B01L2300/161—Control and use of surface tension forces, e.g. hydrophobic, hydrophilic
    • B01L2300/163—Biocompatibility
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2400/00—Moving or stopping fluids
    • B01L2400/04—Moving fluids with specific forces or mechanical means
    • B01L2400/0403—Moving fluids with specific forces or mechanical means specific forces
    • B01L2400/0406—Moving fluids with specific forces or mechanical means specific forces capillary forces
    • B—PERFORMING OPERATIONS; TRANSPORTING
    • B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01L—CHEMICAL OR PHYSICAL LABORATORY APPARATUS FOR GENERAL USE
    • B01L2400/00—Moving or stopping fluids
    • B01L2400/04—Moving fluids with specific forces or mechanical means
    • B01L2400/0403—Moving fluids with specific forces or mechanical means specific forces
    • B01L2400/0409—Moving fluids with specific forces or mechanical means specific forces centrifugal forces
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
    • G01N35/00029—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor provided with flat sample substrates, e.g. slides
    • G01N2035/00099—Characterised by type of test elements
    • G01N2035/00138—Slides
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N35/00—Automatic analysis not limited to methods or materials provided for in any single one of groups G01N1/00 - G01N33/00; Handling materials therefor
    • G01N2035/00465—Separating and mixing arrangements
    • G01N2035/00475—Filters

Definitions

  • fluid samples In certain scientific applications, it is sometimes desirable to subdivide and physically deposit fluid samples into an array of small volume samples. Doing so allows for high throughput assaying of these fluid samples in, for example diagnostic/prognostic tests, biological analyses, biochemical analyses, and/or chemical analyses.
  • Another benefit of simultaneously analyzing samples is the reduction of technical replicate issues (e.g., batch effects) by performing the same assay on the same substrate in parallel.
  • the present invention is directed to the following non-limiting embodiments:
  • the present invention is directed to a device.
  • the device comprises a substrate.
  • the device further comprises a sample restraining module.
  • the sample restraining module is above the substrate.
  • the sample restraining module has an upper opening and a lower opening in fluid communication with each other via a passage. In some embodiments, the sample restraining module is arranged and disposed to direct a fluid introduced into the upper opening to an upper surface of the substrate, such that the fluid settles on the upper surface and forms a fluid droplet.
  • a lower surface of the sample restraining module is in direct contact with the upper surface of the substrate to substantially seal a gap between the substrate and the sample restraining module and allow a region near the lower opening of the sample restraining module and the substrate to form a void to accommodate the formation of the fluid droplet.
  • the lower surface of the sample restraining module is adhered to or fused with the upper surface of the substrate.
  • the upper surface of the substrate is coated with a poly-L- lysine coating, a fibronectin coating, or a collagen coating.
  • the sample restraining module is made from a thermoplastic material.
  • the device further comprises a first patterned template layer.
  • the first patterned template layer has a window region for hosting a plurality of sample restraining modules.
  • the first patterned template layer has one or more openings, each of which hosts one sample restraining module.
  • the device further comprises a second patterned template layer.
  • the second patterned template layer has a window region for hosting a plurality of sample restraining modules.
  • the second patterned template layer has one or more openings, each of which hosts one sample restraining module.
  • the device further comprises a wick above the substrate and having an opening.
  • the sample restraining module passes through the opening of the wick to be in direct contact with the substrate.
  • the wick absorbs a liquid in the fluid droplet and leaves a substance of interest in the fluid droplet on the upper surface of the substrate.
  • sample restraining module comprises a filter such that a sample moving from the upper opening of the sample restraining module to the lower opening of the sample restraining module is filtered.
  • the filter layer removes a debris in the fluid, but does not remove a liquid and a substance of interest in the fluid.
  • the filter is capable of holding droplets of fluid on an upper surface thereof by surface tension prior to an application of a centrifugal force.
  • the device further comprises a lid above the sample restraining module that seals or covers the upper opening of the sample restraining module.
  • the present invention is directed to a method of processing a fluid sample.
  • the method processes the fluid sample with the device herein.
  • the method comprises forming a droplet of the fluid sample on the upper surface of the substrate by introducing the fluid sample into the upper opening of the sample restraining module.
  • forming the droplet of the fluid sample on the upper surface of the substrate comprises subjecting the device holding the fluid sample to a centrifugal force.
  • the method further comprises removing a liquid from the droplet of the fluid sample and leaving a substance of interest on a spot of the droplet.
  • the liquid is removed from the droplet of the fluid sample by subjecting the substrate to an air flow or an elevated temperature.
  • the device further comprises a wick between the substrate and the first patterned template layer, the wick has an opening corresponding to the aperture in the first patterned template, and the wick absorbs the liquid from the droplet of the fluid sample.
  • the present invention is directed to a kit.
  • the kit comprises a substrate.
  • the kit further comprises a sample restraining module.
  • the sample restraining module is for being mounted on an upper surface of the substrate.
  • the sample restraining module has an upper opening and a lower opening in fluid communication with each other via a passage. In some embodiments, when the sample restraining module is mounted on the upper surface of the substrate, a fluid introduced into the upper opening of the sample restraining module is able to settle on the upper surface of the substrate and form a fluid droplet.
  • a lower surface of the sample restraining module is in direct contact with the upper surface of the substrate to substantially seal a gap between the substrate and the sample restraining module and allow a region near the lower opening of the sample restraining module and the substrate to form a void to accommodate the formation of the fluid droplet.
  • the sample restraining module and the substrate are configured such that the lower surface of the sample restraining module is able to be adhered to or fused with the upper surface of the substrate.
  • the upper surface of the substrate is coated with a poly-L- lysine coating, a fibronectin coating, or a collagen coating.
  • the sample restraining module is made from a thermoplastic material.
  • the kit further comprises a first patterned template layer.
  • the first patterned template layer has a window region for hosting a plurality of sample restraining modules.
  • the first patterned template layer has one or more openings, each of which hosts one sample restraining module.
  • the kit further comprises a second patterned template layer.
  • the second patterned template layer has a window region for hosting a plurality of sample restraining modules.
  • the second patterned template layer has one or more openings, each of which hosts one sample restraining module.
  • the kit further comprises a wick for being mounted above the substrate.
  • the wick has an opening.
  • the opening allowing the sample restraining module to pass through the wick and directly contact the substrate.
  • the wick absorbs a liquid in the fluid droplet and leaves a substance of interest in the fluid droplet on the upper surface of the substrate.
  • the sample restraining module comprises a filter such that a sample moving from the upper opening of the sample restraining module to the lower opening of the sample restraining module is filtered.
  • the filter layer removes a debris in the fluid, but does not remove a liquid and a substance of interest in the fluid;
  • the filter is capable of holding droplets of fluid on an upper surface thereof by surface tension prior to an application of a centrifugal force.
  • the kit further comprises a lid for being mounted above the sample restraining module to seal or cover the upper opening of the sample restraining module.
  • Figs. 1A-1B illustrate some elements of the device herein, in accordance with some embodiments.
  • Figs. 2A-2B, 3 A-3B, 4A-4B, 5A-5B, and 6-9 illustrate the first patterned template layer of the device herein, in accordance with some embodiments.
  • Figs. 10A-10B and 11 illustrate the second patterned template layer of the device herein, in accordance with some embodiments.
  • Fig. 12 illustrates the second patterned template layer of the device herein, in accordance with some embodiments.
  • Figs. 13 and 14A-14B are cross-sectional illustrations of the first patterned template layer having funnel-shaped apertures, in accordance with some embodiments.
  • Fig. 15 shows two examples of the first patterned template layers, which were printed with poly-lactic acid, in accordance with some embodiments.
  • the thicknesses of the two first patterned template layers are both 3 mm.
  • the nominal diameters of the apertures on the two examples are 3mm and 6mm, respectively.
  • the alignment marks are nominally 3.75 mm thick.
  • Fig. 16 shows two examples of the second patterned template layers, which were printed using poly-lactic acid, in accordance with some embodiments.
  • the thicknesses of the two second patterned template layers are both 3 mm.
  • Figs. 17A-17C show certain aspects of an example of a sample process using an exemplary device in accordance with some embodiments disclosed herein.
  • Fig. 17A the first patterned template layer of the device, holding fluid droplets by surface tension.
  • Fig. 17B the substrate of the device, after the fluid droplets were transferred thereon.
  • Fig. 17C the substrate of the device, after the fluid droplets thereon have been dried.
  • Figs. 18A-18F show certain aspects of an example of a sample process using an exemplary device in accordance with some embodiments disclosed herein.
  • Fig. 18 A the exemplary device before assembly, which includes a substrate, a wick, a first patterned template layer having 10 apertures, a filter, a second patterned template layer having a window region which allows the apertures in the first patterned template layer to be accessed, and a lid.
  • Fig. 18B the exemplary device, after assembly (without the lid).
  • Fig. 18C fluid droplets loaded on the filter of the device.
  • Fig. 18D the exemplary device, with fluid droplets loaded and completed with the lid.
  • Fig. 18E the exemplary device, secured with a clip.
  • Fig. 18F the exemplary device, loaded with fluid droplets, completed, and placed in a centrifuge.
  • Fig. 19 illustrate a non-limiting example of a lid, in accordance with some embodiments.
  • Figs. 20A-20B illustrate several non-limiting examples of a sample restraining module, in accordance with some embodiments.
  • Fig. 21 illustrates some elements of a non-limiting example of the device herein, in accordance with some embodiments.
  • Figs. 22A-22B illustrate several non-limiting examples of a first/second patterned template layer, in accordance with some embodiments.
  • Fig. 23 illustrates certain aspects of a method of forming a fluid droplet pattern using the device herein, in accordance with some embodiments.
  • first and second features are formed in direct contact
  • additional features may be formed between the first and second features, such that the first and second features may not be in direct contact
  • present disclosure may repeat reference numerals and/or letters in the various examples. This repetition is for the purpose of simplicity and clarity and does not in itself dictate a relationship between the various embodiments and/or configurations discussed.
  • the ability to affix multiple samples on a single substrate could greatly reduce the cost of performing experiments (e.g., through reduction of the volume of reagents required for carrying out multiple single runs) as well as provides significant time savings.
  • Another benefit of simultaneously analyzing samples would be the reduction of technical replicate issues (i.e., batch effects) by performing the same assay on the same substrate in parallel.
  • Existing devices for preparing arrays of small volume fluid samples have certain shortcomings. For example, some existing devices require a significant amount of manual labor to produce the array. Some have sample bleeding issues. Some produce arrays of spots with an inconsistent fluid distribution. Some leave residue on the slide/substrate around areas where the fluid spots are produced, which impedes reagent flow. Some devices include slides patterned with hydrophobic and hydrophilic regions, which affect the flow of fluids. These shortcomings limit the utility of these devices in newer technologies, such as those utilizing fluidics, robotics, or other automation workflows.
  • the present disclosure describes an adaptable device, as well as a method using the same, which can be customized to arrange fluid spots/droplets in arrays of any pattern, on any sized substrate.
  • the device and method herein allow the accommodation of layering such that processing steps (e.g., micro-, ultra-, nanofiltration; heated or cooled wells, etc.) can be added or subtracted, as needed.
  • the device herein (a) allows good adherence between the fluid sample and the substrate on which the array is formed, (b) allows for high throughput assays that can be customized in size, number, and dimension (e.g, fiducial framing), (c) provides improved consistency in fluid distribution within a spot and between spots (patterning), (d) leaves the substrate free from debris or other contaminants, (e) offers flexibility for use in a wide variety of instrumentation systems, (f) allows for increased flexibility for the materials to be used (e.g., allows materials under test or observation to remain in suspension as opposed to directly being deposited from vessel to substrate without observation or other processing), and (g) provides a flexible framework for assembling layers of materials to customize and stage assays in order to allow for “lab-in-suspension” approach before depositing processed fluids to be deposited on a substrate.
  • fiducial framing e.g, fiducial framing
  • c) provides improved consistency in fluid distribution within a spot and between spots (patterning)
  • the device and method herein allow the formation of arrays of fluid droplets/spots using common laboratory systems such as pipettes and centrifuges, and is compatible with automation such as robotics, liquid or bioprinting, or other lab-in-suspension assays.
  • an element or component is said to be included in and/or selected from a list of recited elements or components, it should be understood that the element or component can be any one of the recited elements or components and can be selected from a group consisting of two or more of the recited elements or components.
  • the acts can be carried out in any order, except when a temporal or operational sequence is explicitly recited. Furthermore, specified acts can be carried out concurrently unless explicit claim language recites that they be carried out separately. For example, a claimed act of doing X and a claimed act of doing Y can be conducted simultaneously within a single operation, and the resulting process will fall within the literal scope of the claimed process.
  • “About” as used herein when referring to a measurable value such as an amount, a temporal duration, and the like, is meant to encompass variations of ⁇ 20% or ⁇ 10%, in certain embodiments ⁇ 5%, in certain embodiments ⁇ 1%, in certain embodiments ⁇ 0.1% from the specified value, as such variations are appropriate to perform the disclosed methods.
  • the term “top,” “bottom,” “upper,” “lower,” “above,” “below,” “upward,” “downward,” etc. when referring to positions of elements, surfaces of elements herein or directions, do not indicate the absolute positions/directions in the real world. Rather, these terms should be interpreted based on the drawings herein.
  • the an “upper surface” of an element is the surface which is higher than the “lower surface” of the same element in the direction of the vertical axis (z-axis) as shown in the figures.
  • the term “downward” means a direction opposite to the direction of the z- axis.
  • the present invention is directed to a device.
  • the device arranges a plurality of fluid droplets according to a predetermined pattern, such as on a substrate of the device.
  • some or all of the fluid droplets of the plurality of fluid droplets include a substance to be collected and a liquid.
  • the device collects the substance from the plurality of fluid droplets and/or according to the predetermined pattern.
  • the substance may be collected from the plurality of fluid droplets in the predetermined pattern on the substrate thereof.
  • the device is configured to be centrifuged. In some embodiments, during the centrifugation, a centrifugal force is applied to the fluid droplets in a direction pointing roughly downwardly of the device.
  • the device 100 includes a substrate 110, and a first patterned template layer 130 on and above the substrate 110.
  • the substrate 110 holds the plurality of fluid droplets, and/or the substance collected from the fluid droplets, and the first patterned template layer 130 arranges the fluid droplets (and thereby the collected substance) according to the predetermined pattern.
  • the substrate 110 is configured to hold the substance, such as a liquid, a cell, or the like, that is being collected from the plurality of fluid droplets.
  • the substrate 110 is a slide, such as a microscope slide.
  • the slide is charged and/or coated.
  • the slide is a FisherbrandTM SuperfrostTM Plus Microscope Slide (catalog no. 12-550-15) (which has a width of 25 mm and a length of 75 mm in accordance with some embodiments).
  • the substrate 110 is coated. In some embodiments, the coating on the substrate 110 is hydrophilic, hydrophobic, and/or charged. In some embodiments, the coating on the substrate 110 functionalizes the coated area. In some embodiments, the entirety of the upper surface of the substrate 110 is coated. In some embodiments, only a portion of the upper surface of the substrate 110 is coated. In some embodiments, the substrate 110 is coated with more than one type of material having different properties (e.g., two or more of hydrophilic, hydrophobic, positively charged, or negatively charged). In some embodiments, the coating has a pattern. For example, in some embodiments, the substrate 110 is coated with a first material that retains the fluid droplets in areas in which the fluid droplets stay, and with a second material that expels the fluid in areas in which the fluid droplets are not supposed to be.
  • the substrate 110 is coated with a poly-l-lysine.
  • the substrate 110 is coated with a poly-l-lysine solution (e.g., a 0.1 % (w/v) poly-l-lysine aqueous solution, such as that commercially available from Sigma Aldrich with product number P8920-100mL).
  • the charging and/or coating promotes adhesion between the plurality of fluid droplets and the substrate 100, thereby retaining the deposited droplets in specific areas of the substrate 110.
  • the coating on the substrate 110 has a pattern. In some embodiments, the patterned coating allows the substrate 110 to retain the deposited fluid droplets at specific spatial locations. In some embodiments, the patterned coating creates channels for fluid to flow between spots.
  • the first patterned template layer 130 is on and in direct contact with the substrate 110.
  • the device 110 further comprises a wick 120 (described elsewhere herein) sandwiched between and in direct contact with the substrate 110 and the first patterned template layer 130.
  • the first patterned template layer 130 has a plurality of apertures 132.
  • the plurality of apertures 132 are arranged according to the predetermined pattern such that the plurality of fluid droplets can be arranged on the substrate 110 with the same pattern.
  • the apertures 132 extend through the thickness of the first patterned template layer 130. In some embodiments, the apertures 132 define regions through which the fluid can be introduced onto the substrate 110, thereby allowing the patterned array of fluid droplets to be formed. In some embodiments, a volume of the apertures 132 is calculated based on the thickness thereof in the z-direction and the lateral dimensions in the xy plane.
  • a diameter (or an equivalent diameter in the case that the aperture 132 is not round along the xy plane) of the aperture 132 in the xy plane is about 1 mm, such as about 1.5 mm, about 2 mm, about 2.5 mm, about 3 mm, about 5 mm, about 8 mm, about 10 mm, about 15 mm, about 20 mm, or any ranges therebetween.
  • the aperture 132 is sized to provide a droplet volume between about 0.5 pl and about 100 pl, such as between about 5 pl and about 50 pl, between about 8 pl and about 25 pl, or between 10 pl and 20 pl. In some embodiments, the aperture 132 is sized to provide a droplet volume of about 0.5 pl, about 1 pl, about 2 pl, about 5 pl, about 8 pl, about 10 pl, about 15 pl, about 20 pl, about 25 pl, about 50 pl, about 80 pl, about 100 pl, or any ranges therebetween.
  • all or some of the apertures 132 are within a window area 134, which remains accessible when a second patterned template layer 150 (described elsewhere herein) is attached.
  • the first patterned template layer 130 provides a template for holding the plurality of fluid droplets in place, such as before, during and after a centrifugation. In some embodiments, the first patterned template layer 130 provides an opening through which fluid flows, such as when the fluid is being collected or removed from the device via, e.g., a filter.
  • the device 100 further comprises the wick 120 between the substrate 110 and the first patterned template layer 130.
  • the wick 120 is in direct contact with the substrate 110, the first patterned template layer 130, or both.
  • the wick 120 has a plurality of openings 122.
  • the openings 122 in the wick 120 allow the fluid droplets in the first patterned template layer 120 to access the substrate 110.
  • the sizes, shapes and/or patterns for openings 122 can be used/formed according to the design of the first patterned template layer 130.
  • the locations of the openings 122 in the wick 120 correspond to the locations of the apertures 132 in the first patterned template layer 130. In some embodiments, each corresponding opening 122 and aperture 132 are concentric with each other.
  • the wick openings 122 are of about same size as the apertures 132 on first patterned template 130. In some embodiments, the holes 122 are slightly larger than the apertures 132, such as about 1% larger, about 2% larger, about 5% larger, about 10% larger, about 20% larger, or about 50% larger in diameter. In some embodiments, the slightly larger holes 122 provide the space for capillary action, such as capillary action to remove the liquid from the fluid droplet.
  • the wick 120 absorbs the liquid in the fluid droplets, thereby separating the liquid from the substance of interest on the substrate 110. In some embodiments, the wick 120 soaks up fluids between samples (fluid droplets) so that samples do not cross-contaminate. In some examples, the inclusion of the wick 120 allows the elimination of the coating/modification on the top surface of the substrate 110. In some embodiments, the wick 120 works in conjunction with the first template layer 130 to prevent the dispersion or spreading of fluids on the substrate 110.
  • the choice of material for the wick 120 is not limited.
  • Non-limiting examples of materials for the wick 120 include filter paper or blotting paper, sponge, cloth, and the like.
  • the wick 120 is made from Whatman filter paper Grade 1 (with 0.30 mm thickness) or VWR® Blotting Paper, Grade 703 (catalog number 28298-028).
  • Other materials, including but not limited to sponge, cloth, or the like, with different thicknesses can be used.
  • the device 100 further comprises a filter layer 140 on and above the first template layer 130. In some embodiments, the filter layer 140 is in direct contact with the first template layer 130.
  • the filter 140 holds the fluid droplets on an upper surface thereof when a centrifugal force is not applied. In some embodiments, the filter 140 sorts the substance in the fluid droplets according to a size of a mesh of the filter. In some embodiments, the filter 140 filters the fluid, removing large debris from the fluid and allowing liquid and smaller particles to pass through, land on the substrate 110, and form fluid droplets inside the apertures 132 or on substrate 110.
  • the material of the filter 140 is not limited. Non-limiting examples of materials of the filter 140 include nylon, polyester, polypropylene, poly ether ether ketone (PEEK), stainless steel, combinations thereof, or the like. In some embodiments, the material of the filter 140 is hydrophobic. In some embodiments, the material of the filter 140 is hydrophilic. In some embodiments, the material of the filter 140 is charged.
  • the thickness and mesh size of the filter 140 is not limited and can be chosen according to, e.g., the nature of the sample, the material and/or coatings of the substrate 110, the size and/or shapes of the apertures 132, the thickness of the second patterned template layer 150 (described elsewhere herein), and the like.
  • the thickness and/or mesh size of the filter 140 are chosen such that the fluid sample is retained on the upper surface of the filter 140 prior to the application of centrifugal force, and is allowed to pass through the mesh of the filter 140 to reach the lower side of the filter 140, such as to reach the apertures 132 and/or the upper surface of the substrate 110 during the application of the centrifugal force.
  • a thickness of the filter 140 ranges from about 2 pm to 2000 pm, such as from about 5 pm to 1000 pm, from about 10 pm to 500 pm, from about 20 pm to 200 pm, or from about 50 pm to 100 pm. In some embodiments, the thickness of the filter 140 is about 2 pm, about 5 pm, about 10 pm, about 20 pm, about 50 pm, about 100 pm, about 200 pm, about 500 pm, about 1000 pm, about 2000 pm, or any ranges therebetween.
  • a mesh size of the filter 140 ranges from about 2 pm to 2000 pm, such as from about 5 pm to 1000 pm, from about 10 pm to 500 pm, from about 20 pm to 200 pm, or from about 50 pm to 100 pm. In some embodiments, the mesh size of the filter 140 is about 2 pm, about 5 pm, about 10 pm, about 20 pm, about 50 pm, about 100 pm, about 200 pm, about 500 pm, about 1000 pm, about 2000 pm, or any ranges therebetween. In some embodiments, the filter 140 is a nylon mesh filter having a thickness of about 70 gm and a mesh size of about 70 gm (e.g., Spectrum Laboratories product no. 145801).
  • the filter 140 absorbs the liquid in the fluid sample. In some embodiments, the filter 140 does not absorb the liquid, or does not substantially absorb the liquid.
  • the filter 140 is constructed from a material having resistance against corrosives, alkalis, organics, and/or acids. In some embodiments, the filter 140 has a pH resistance between pH values of about 2 and 14 or between about 3 and 10. In some embodiments, the filter 140 is considered to have pH resistance at a given pH value if the filter 140 is able to perform its intended function (e.g., retaining fluid at either side thereof, filtering fluid, or the like) for 1 hour or more.
  • its intended function e.g., retaining fluid at either side thereof, filtering fluid, or the like
  • the filter 140 has a thermal stability at about 130 °C or higher, such as about 150 °C or higher, about 160 °C or higher, about 180 °C or higher, about 200 °C or higher, about 230 °C or higher, or about 250 °C or higher, for 1 hour or more.
  • the filter 140 is sterilizable by irradiation sterilization or autoclaving, without causing substantial damage to its intended function.
  • the device 100 further comprises a second patterned template layer 150 on and above the first patterned template 130.
  • the second patterned template layer 150 is in direct contact with the first patterned template 130.
  • the second patterned template layer 150 is above and in direct contact with the filter 140.
  • the second patterned template layer 150 has a window area 154.
  • the window area allows the visual inspection and/or access of some or all of the apertures 132 in the first patterned template 130.
  • the second patterned template layer 150 provides a thickness to the stack of layers in device 100 without touching or interfering with the fluid samples. In some embodiments, a thickness of the second patterned template layer 150 is equal to or larger than a height of the fluid droplets formed on either the optional filter 140 or a height of a portion of the fluid droplets in the apertures 132 that is above the upper surface of the first patterned template layer 130, such that the stacking of any subsequent layer, if any, does not interact with the fluid droplets.
  • the second patterned template layer 150 stabilizes the stack so that the sections fit together without bulges or gaps. In some embodiments, the second pattern template layer 150 facilitates the introduction of the fluid into the lower (underlying) layers, such as the substrate 110, the first patterned template layer 130, the wick 120, and the filter 140.
  • the second patterned template layer 150 comprises features on a lower surface thereof that can retain the optional filter 140 layer in place.
  • the device further comprises a lid 160 on and above the first patterned template layer 130.
  • the lid 160 is in direct contact with the second patterned template layer 150 (if present), in direct contact with the filter 140 (if present and the second patterned template layer 150 is not present), or in direct contact with the first pattern template layer 130 (if both the filter 140 and the second patterned template layer 150 are absent).
  • the lid 160 tops off the stack of layers of the device 100, and prevents fluid loss. In some embodiments, the lid 160 provides a surface for screws, clips, and/or clamps to attach to the device 100 without disrupting the sample collection area as defined by the substrate 110, the aperture 132, the optional openings 122, and the optional window area 154. In some embodiments, the lid 160 provides a mechanical structure that allow the device 100 to be placed into a centrifuge.
  • the material for making the lid 160 is not limited.
  • the lid 160 is a glass lid, a metal lid, a plastic lid, a polymer lid, or the like.
  • the lid 160 is a glass microscope slide with the same size as the microscope slide used for substrate 110.
  • lid 160 is formed using the same materials as the patterned template layers 130 and/or 150.
  • the device 100 further comprises a stretch film (such as a polyolefin-based film like parafilm), a screw, a clip, and/or a clamp for securing the layers of the device 100 together and keeping the proper alignment of the layers.
  • a stretch film such as a polyolefin-based film like parafilm
  • all the layers of the device 100 are mechanically clipped together using a stretch film, a screw, a clip (e.g., a glass clip), a clamp, and the like.
  • a clip e.g., a glass clip
  • a clamp e.g., a clamp
  • the glass clip is those made by the Guangzhou Open Find Electronic Commerce Co, LTD, with the catalog number A170826WQ001.
  • This clip is a zinc alloy rectangle adjustable clip clamp, with an internal bracket holder to support a device between 6- 10mm thickness.
  • elements for securing and aligning the layers of the device 100 are built into the first patterned template 130, the second patterned template 150, and/or the lid 160. In some embodiments, elements for securing and aligning the layers of the device 100 are built into the lid 160.
  • the lid 160 comprises features that allow lid 160 to mechanically combine with the substrate 110, thereby securing all the layers sandwiched between the lid 160 and the substrate 110, without the need for a screw/clip/clamp.
  • the lid 160 is mechanically combinable with the first patterned template layer 130, the second patterned template layer 150, the wick 120 and/or the filter 140 (provided that these layers are part of the device 100).
  • the lid 1900 comprises a base 1902, sidewalls 1904, and retaining features 1906.
  • the lid 1902 slides over the previously-combined structure (e.g., the substrate, the patterned template layer(s), the wick, and the filter), and secures all the layers in a properly aligned state.
  • the device 100 comprises the substrate 110, the wick 120 (optional), the first patterned template layer 130, the filter 140 (optional), the second patterned template layer 150 (optional), and the lid 160 (optional) from bottom to top in this order, and each of the layers is in direct contact with the adjacent layer(s).
  • the substrate 110 at the bottom is in direct contact with the first patterned template layer 130 in the middle
  • the first patterned template layer 130 in the middle is also in direct contact with the lid 160 on the top.
  • the device 100’ further comprises a funnel 170’ inserted into the aperture 132’ of the first patterned template layer 130’.
  • the funnel 170’ extends beyond an upper surface (relative to the direction of the z-axis) of the first patterned template layer 130’ or a lower surface (relative to the direction of the z-axis) of the first patterned template layer 130’
  • the funnel 170’ is fabricated as a part of the first patterned template layer 130’. In some embodiments, the funnel 170’ is a separate element from the first patterned template layer 130’ and aligns with the apertures 132’.
  • the maximum volume the funnel 170’ is able to hold is about 10 pl, about 20 pl, about 50 pl, about 100 pl, about 200 pl, about 500 pl, or about 1000 pl. In some embodiments, the inclusion of the funnel 170’ allows the first patterned template layer 130’ to hold larger volume of fluid than in the case where the funnel 170’ is absent. First patterned template layer
  • the first patterned template layer 200 has an upper surface 202, and a lower surface 204.
  • a thickness of the first patterned template layer 200 in the z direction is Z200.
  • the first patterned template layer 200 has a first dimension X202 and a second dimension y202.
  • first patterned template layer 200 has a plurality of apertures 206 that extend through the thickness of the substrate.
  • the apertures 206 have a dimension X206 and y206 in the plane of the upper and lower surfaces.
  • the plurality of apertures 206 is in a window region 208, which has dimensions dimension X208 and y208.
  • the first patterned template layer 200, the window region 208, and the plurality of apertures 206 can have any dimension and/or shape.
  • the location as well as the dimensions in the x-y plane of the window region 208 is configured depending on the imaging tool that is to be used.
  • Figs. 3 A and 3B illustrate another configuration of the first patterned template layer 300, which is similar to that of the first patterned template layer 200, but with the addition of alignment features 310a, 310b, 310c, and 3 lOd to assist in the alignment of the template with layers above or below the first patterned template layer 300 (e.g., substrate, wick, filter, lid, etc.).
  • alignment features 310a, 310b, 310c, and 3 lOd to assist in the alignment of the template with layers above or below the first patterned template layer 300 (e.g., substrate, wick, filter, lid, etc.).
  • the alignment features 310a and 310c are along one of the longitudinal edges of the template 300, and the alignment features 310b and 3 lOd are along the two lateral edges.
  • the alignment features 310a-3 lOd have a thickness t2io greater than the thickness tioo of the first patterned template layer 300, to facilitate the alignment of the first patterned template layer 300 with other layers of the device herein.
  • FIGs. 4A and 4B illustrate another configuration of the first patterned template layer 400, with a set of alignment features 401a, 401b and 401c.
  • Figs. 5A and 5B illustrate yet another configuration of the first patterned template layer 500 having yet another set of alignment features 510a and 510b.
  • the first patterned template layer can be made of any suitable material.
  • the first patterned template layer is made from glass, stainless steel, polytetrafluoroethylene (Teflon), nylon, a plastic or a polymeric material, a poly-lactic acid (PLA), a PEEK, or combinations thereof.
  • the first patterned template layer is formed using an additive manufacturing (such as a 3D printing), which is able to create the apertures in the manufacturing process.
  • the apertures are made by machining an unpatterned sheet of material.
  • the first patterned template layer is formed using injection molding.
  • a combination of the material type and the thickness of the material provides sufficient rigidity to the first patterned template layer, such as allowing the upper and lower surfaces thereof to remain flat during production and/or use.
  • the first patterned template layer may be of any shape, size, and/or dimensions.
  • the first patterned template layer is sized to match the other layers of the device, such as the substrate, the lid, etc, in the xy plane.
  • the first patterned template layer has dimensions in the xy plane that match a rectangular microscope slide, which can be used as the substrate and/or the lid. For example, if a FisherbrandTM SuperfrostTM Plus Microscope Slide (catalog no. 12-550-15) with a width of 25 mm and a length of 75 mm is used as the substrate and/or lid, the width and length of the first patterned template layer can be 25 mm and 75 mm, respectively.
  • the first patterned template layer is square or circular in the xy plane.
  • the window region which is defined by the instrumentation with which the substrate-to-be-pattemed will be used, takes any shape that fits within the area of the substrate surface. As shown in Figs. 2A, 2B, 3 A, 3B, 4A, 4B, 5A, 5B, 6, 7, and 8, the window region (indicated by a dashed line) can be rectangular, square, or circular, though other shapes may be used according to the instrumentation used to analyze the droplets on the slide.
  • the apertures of the first patterned template layer do not have to be round in the xy plane, and that the window region does not have to be rectangular; rather, they can take any shape.
  • the first patterned template layer 800 has square apertures 806 that fit within a circular window 808.
  • the alignment features can extend beyond one or both of the surfaces of the first patterned template.
  • the alignment features extend above one of the two surfaces of the first patterned template only.
  • the alignment features 910 extends beyond both the lower surface 904 and the upper surface 902 (t9io > t9oo).
  • the first patterned template layer has features on the upper surface thereof that allows the retention of the optional filter layer in place. In some embodiments, these features could include internal clamps within the layer, interlocking pieces between layers, protrusions, designs that support a taut filter layer, or the like.
  • the xy plane cross-sections of an aperture in the first patterned template layer do not have the same size and/or shape along the vertical direction (the z-axis) (i.e., having an “irregular shape”).
  • the first patterned template layer, in the regions near the apertures comprises guide structures that extend beyond one or both of the surfaces of the first patterned template layer.
  • the irregular shape of the aperture and/or the guide structures provides better confinement of fluid droplets as they are formed on the substrate below. In some embodiments, the irregular shape of the aperture and/or the guide structures provides better confinement of the fluid in the aperture that extends beyond a level of the upper surface of the first patterned template layer and prevents leakage and/or spreading of fluid across separating regions between the apertures.
  • a cross-section of an embodiment of the first patterned template layer 1300 is shown.
  • a plurality of apertures 1306 are arranged inside a window region 1308, which has a dimension of XBOS in the x-direction.
  • Each of the apertures 1306 has a first dimension xi306a at an upper surface 1302 of the first patterned template layer 1300, and a second dimension xi306b at the lower surface 1304.
  • the first dimension xi306a is larger than the second dimension xi306b.
  • the apertures 1306 have a funnel shape, such as a circular conical funnel shape.
  • the funnel shape allows the fluid to be held at a top side of the aperture 1306 by surface tension before application of the centrifugal force, while also allowing the fluid to move to the bottom side of the aperture 1306 when the centrifugal force is applied.
  • the funnel design allows for more fluid to be deposited within the layer. Any shape of the funnel in both the xy plane and in the z direction may be chosen to control the fluid delivery.
  • the cross-section of the aperture at the xy plane may have a circular shape, a square shape, a rectangular shape, an elliptical shape or any other shape.
  • the lateral or longitudinal dimension changes linearly (e.g., a conical funnel shape in the xz or yz plane) or non-linearly (e.g., an hourglass shape in the xz or yz plane).
  • the apertures 1306 have regions where the lateral/longitudinal dimension is varying in the z- direction, and regions where the lateral/longitudinal dimension is fixed in the z-direction. Referring to Fig.
  • the first patterned template layer 1400 comprises, near the apertures 1406 (such as funnel shaped aperture 1406), retaining protrusions 1412 above an upper surface 1402.
  • the retaining protrusions 1414 confine a deposited fluid in apertures 1406 above a level of the lower surface 1404, such that the fluid does not spread between adjacent apertures 1406.
  • the first patterned template layer 1400’ comprises, near the apertures 1406’ (such as funnel shaped aperture 1406’), protrusions 1414’ below surface 1404’.
  • the protrusions 1414’ confine deposited fluid on the underlying substrate directly under aperture 1406, preventing spreading.
  • first patterned template layers 1600 and 1650 are shown.
  • the exemplary first patterned template layers are 3D printed using PLA.
  • Each first patterned template layer is approximately 3mm thick.
  • the apertures in 1600 are approximately 3 mm in diameter, and the apertures in 1650 are approximately 6 mm in diameter. Alignment marks are nominally 3.75 mm thick.
  • the apertures fit within the window region of the second template layer (1700, shown in Fig. 16).
  • Openings in an underlying (optional) wick layer are concentric with the apertures in the first patterned template layers.
  • the openings are the same size as, or larger than the aperture sizes in the first patterned template layer. Where the aperture dimension varies in the z-direction, the opening is the same as or larger than the dimension of the aperture where it is in contact with the wick layer.
  • the second patterned template layer 1000 is sized identically with the first patterned template layer, so that the two patterned temple layers can be aligned.
  • the two patterned template layers are aligned using alignment marks.
  • the two patterned template layers are aligned through alignment features incorporated into at least one of the first and second patterned template layers to facilitate their alignment and integration.
  • the alignment features include a clip or a “runner” that allows one layer to slide over or under the other.
  • the second patterned template layer 1000 has a window region 1008, which is sized the same as or larger than the window region of the first patterned template layer (such as the window region 134 of the first patterned template layer 130 as shown in Fig. 1 A).
  • the window region 1008 allows the access of some or all of the apertures of the first patterned template layer.
  • the second template layer 1000 comprising additional alignment features is shown.
  • the location of the alignment features on the second patterned template layer 1000 is not limited and is the same as or similar to those as described for the first patterned template layer in some embodiments.
  • the second patterned template layer 1200 of Fig. 12 is patterned with an array of holes 1206 that fit within window area 1208.
  • the size (e.g., diameter or equivalent diameter) of the apertures 1206, dnoe is chosen to be equal to or greater than the size (diameter or equivalent diameter) of the apertures 606 (d606) in the first patterned template layer 600 shown in Fig. 6.
  • the apertures 1206 of Fig. 12 and the apertures 606 of Fig. 6 are concentric when the two patterned template layers are properly aligned, and the size of the apertures 1206 in the second patterned template layer 1200 is equal to or larger than the size of the apertures 606 in the first patterned template layer 600.
  • the shapes and profiles of the apertures in the second patterned template layer are not limited, as long as they are compatible with the apertures in the first patterned template layer.
  • the thickness of the second patterned template layer is not limited, as long as such a thickness is sufficient to provide rigidity.
  • One of ordinary skill in the art would be able to determine the thickness based on the material used for constructing the second patterned template layer, as well as the shape, size, number and arrangement of cut-out sections, such as the window region or the aperture in the second patterned template layer.
  • the manufacture of the second patterned template layer is similar to that of the first patterned template layer, which is described elsewhere herein.
  • the two second patterned template layers 1700 and 1750 are 3D printed using PLA.
  • Each second patterned template layer is approximately 3mm in thickness.
  • the window size in the second patterned template layer 1700 is approximately 18 mm by 34.9 mm, which corresponds to an optical measurement area of a particular analysis tool (this analysis tool is not considered part of the device herein), and the window size in the second patterned template layer 1750 is approximately 21 mm by 37 mm.
  • the present invention is directed to a method of processing a sample with the device herein.
  • the method comprises loading a fluid sample onto the device.
  • the device does not comprise the filter, and the fluid is loaded directly into the apertures of the first patterned template layer.
  • the device comprises the filter, and the fluid is loaded on an upper side of the filter opposite to the first patterned template layer.
  • the fluid passes through the filter and enters the aperture in the first patterned template layer without the application of a centrifugal force.
  • surface tension holds the fluid droplets on the filter and a centrifugal force is applied before the fluid droplets pass through the filter and enter the aperture in the first patterned template layer.
  • the fluid droplets on the filter or in the apertures of the first patterned template layer are settled on an upper surface of the substrate, via gravity, charge- charge/hydrophilic/hydrophobic interaction between the fluid droplet and the substrate, and/or the application of a centrifugal force.
  • the method further comprises drying the fluid droplets transferred to the substrate.
  • the method of drying the fluid droplets is not limited.
  • the substrate is subjected to a flow of air or a temperature at least 20 degrees Celsius above room temperature.
  • the wick between the substrate and the first patterned template layer removes all or a part of the liquid in the fluid droplet.
  • Figs. 17A-17C illustrate a non-limiting example of the method herein.
  • fluid droplets were applied on a non-limiting first patterned template layer having a 5 x 8 array of apertures by pipetting, and were held in the apertures by the surface tension alone.
  • the fluid droplets were transferred onto the surface of the substrate (a microscope slide having a frosted region) by stacking the first patterned template layer of Fig. 17 on top of the substrate, and applying a centrifugal force downwardly. As shown in Fig. 17B, the fluid droplets were confined to the substrate in regions under the apertures, with no observable spreading or cross-contamination.
  • the array of fluid droplets shown in Fig. 17B were dried by placing the substrate on a slide warmer of about 65 °C for about one hour. After drying, an array of solid substance spots was formed on the substrate, which can be subjected to further analysis.
  • the solid substance spots can be stained with antibodies or dyes for specific types of immune cells, enabling the identification and counting of the immune cells present in the saliva samples.
  • Figs. 18A-18F illustrate another non-limiting example of the method herein.
  • a non-limiting device comprises a substrate, a wick, a first patterned template layer with apertures, a filter, a second patterned template layer with a window region, and a lid.
  • the layers of the non-limiting device, apart from the lid, were assembled using parafilm as a fastening mean.
  • droplets of fluid samples were introduced onto the filter at locations corresponding to the apertures in the first patterned template layer with a pipette, which accessed the filter through the window region of the second patterned template. Due to surface tension, the fluid droplets are held on the filter.
  • a clip with screws was used to secure the layers together.
  • Fig. 18F the assembly of Fig. 18E was place in a centrifuge, which can apply a centrifugal force to the assembly and settle the fluid droplets on the bottom substrate layer.
  • sample restraining modules such as sample restraining modules 190 or 195 shown in Figs. 20A and 20B, respectively.
  • the sample restraining module 190 has an upper opening 191, a lower opening 192, and a passage 193 connecting the two openings.
  • Such configuration allows the sample to be loaded into the upper opening 191, move downward along the passage 193 either by gravity or the application of a centrifugal force, and settle at the lower opening 192, which is in proximity with the substrate.
  • the sample loaded into the sample restraining module 190 can settle on the substrate and form a fluid droplet in a size/shape similar to the lower opening 192.
  • the sample restraining module 190 can be made much smaller than the first patterned template layer.
  • the sample restraining module 190 can be configured such that they can be adhered or fused to the substrate temporarily before the samples are being loaded, remain one piece with the substrate when the device is being subjected to a centrifugal force, and be removed with relatively easy when the centrifugation is complete. This way, leakage along the xy plane on the upper surface of the substrate can be substantially reduced or even entirely eliminated.
  • the use of the sample restraining module 190 eliminates the direct contact between the sample and the first patterned template layer. As such, the first patterned template layer does not need to contact the sample and become contaminated. This way, the first patterned template layer can be reused without thorough cleaning procedures.
  • the sample restraining module 190 is a hollow columnar structure, such as a hollow cylinder. It is worth noting that the sample restraining module 190 does not have to be cylindrical as suggested by Fig. 20A. Rather, as long as the sample restraining module 190 has the top opening 191 for sample loading, the bottom opening 192 for the loaded sample to settle on the substrate (such as the substrate 110” of Fig. 21) without substantial leakage during the application of a downward centrifugal force, and a passage 193 fluidly connecting the two openings, the configuration of the sample restraining module 190 is considered to be within the scope of the instant specification.
  • the sample restraining module 190 includes an adhesive on a bottom surface thereof. According to this embodiment, the sample restraining module 190 can adhere to the substrate, thereby sealing off any gaps between the lower opening 192 and the substrate and preventing leakage of sample during the centrifugation.
  • the materials for constructing the sample restraining module 190 are not limited. Virtually all materials that do not affect the sample (such as do not react with or contaminate the sample) and can hold the sample within without leaking can be used.
  • the sample restraining module 190 is constructed from a thermoplastic. Thermoplastics, such as low-density polyethylene (food-grade plastic), become softened and sticky when subjected to an elevated temperature, and fuse with the substrate at the lower opening 192 and seal off any gaps to prevent leakage during centrifugation. As such, construction of the sample restraining module 190 using thermoplastics allows the elimination of the adhesive.
  • Fig. 20B shows an alternative embodiment of the sample restraining module 195, which is similar to the sample restraining module 190 of Fig. 20A but further includes a filter 198. According to this embodiment, the sample loaded into the sample restraining module 195 would move downwardly during the application of the centrifugal force, passing through the filter 198, and settle on the substrate in a spot defined by the lower opening of the sample restraining module 195.
  • the sample restraining module 195 includes an upper portion
  • one or both of the upper portion 196 and the lower portion 197 are the same as or similar to the sample restraining module 190 shown in Fig. 20A.
  • a lower opening of the upper portion 196 is aligned with an upper opening of the lower portion 197 such that the internal passages of the upper portion 196 and the lower portion 197 are continuous.
  • the filter 198 of the sample restraining module 195 is the same as or similar to the filter described elsewhere herein, such as the filter 140 of Fig. 1 A, apart from having a smaller dimension on the xy plane to accommodate the smaller size of the sample restraining module 195.
  • the device 100 includes, from bottom to top, a substrate 110”, an optional wick 120” having one or more openings 122”, a first patterned template layer 130” having a window region 134”, one or more sample restraining modules 190” or sample restraining modules 195”, an optional second patterned template layer 150” having a window region 154”, and an optional lid 160”.
  • the substrate 110 is the same as or similar to the substrates described elsewhere herein, such as the substrate 110 of Fig. 1 A.
  • the substrate 110 is coated with a coating that allows the sample restraining modules 190” or 195” to both fuse or adhere to the substrate 110” and removed mechanically (such as by using a pair of tweezers).
  • the sample restraining modules 190” or 195 are sometimes made from thermoplastics and are fused to the substrate 110” by heating up the sample restraining modules 190” or 195”, in some embodiments, the substrate 110” is coated with poly-L-lysine, fibronectin, collagen, or other materials that promotes the adhesion.
  • the optional wick 120 is the same as or similar to the wicks described elsewhere herein, such as the wick 120 of Fig. 1 A.
  • the wick 120 has one or more openings 122” that align with the sample restraining modules 190” or 195” such that the bottom surface of the sample restraining modules can be in direct contact with the substrate 110” through the openings 122” to allow the adhesion/fusion between the sample restraining modules 190’7195” and the substrate 110”.
  • sample restraining modules 190” or 195 are the same as or similar to those described elsewhere herein, such as in Figs. 20A and 20B.
  • the first patterned template layer 130” and the optional second patterned template 150” are the same as or similar to those described elsewhere herein, such as the first/second patterned template layer described in Figs. 1 A, 2A-2B, 3A-3B, 4A-4B, 5A-5B, 6-9, 10A-10B, 11-13, 14A-14B, and 15-16. It is particularly worth noting that the first patterned template layer 130” can be the same as those for the second patterned template described elsewhere, and the second patterned template layer 150” can be the same as those for the first patterned template described elsewhere.
  • the sample restraining modules 190” or 195 are responsible for defining the regions for forming the fluid spots.
  • the functions of the first patterned template layer 130” and the optional patterned template layer 150” become, among others, holding the sample restraining modules 190” or 195” before and during the sample restraining modules 190” or 195” are being coupled to the substrate, and providing structural support in the device 100”, such as structural support for the sample restraining modules 190” or 195” during the centrifugation.
  • the shape and size of the openings/window regions 134” and 154” are chosen according to the size of the sample restraining modules 190” or 195”, and configurations previous described for various first/second patterned template layer are all applicable to the first patterned template layer 130” and the optional patterned template layer 150”.
  • Figs. 22A and 22B show two configurations for the first/second patterned template layers 2202 and 2202’.
  • the first/second patterned template layer 2202 has a window region 2208, which allows a plurality of sample restraining modules 2212 to fit in.
  • the first/second patterned template layer 2202’ has a plurality of openings 2206’ in a window region 2208’, each of which can accommodate one sample restraining module 2212’.
  • whether to include the second patterned template 150” in the device 100” depends on the height of the sample restraining modules 190” or 195”. If the height of the sample restraining modules 190” or 195” is larger than the thickness of the first patterned template layer 130”, the second patterned template layer 150” is required if the optional lid 160” is also required. In some embodiments, the height of the sample restraining modules 190” or 195” is larger than the sum of the thickness of the first patterned template layer 130” and the thickness of the second patterned template layer 150”, a one more similar patterned template layer(s) (not shown) can be included.
  • the sample restraining modules 190” or 195 is securely coupled to (such as fused with or adhered to) the substrate before the application of centrifugal force according to some embodiments, the first/second patterned template layer 130’7150”, as well as the lid 160” are optional during the centrifugation process. As such, in some embodiments, the device 100” herein does not include the first/second patterned template layer 130’7150” and/or the lid 160”.
  • the lid 160 is the same as or similar to the lids described elsewhere herein, such as the lid 160 of Fig. 1 A or the lid 1900 of Fig. 19.
  • the device 100 further includes one or more elements described elsewhere herein, which is not shown in Fig. 21.
  • Methods of using the device including the sample restraining module is generally the same as that of using the device which uses the first patterned template layer to define fluid spots described herein. The only difference is that the sample restraining module(s) needs to be mounted on and coupled to the substrate, the sample is loaded into the sample restraining module(s), and that the sample restraining module(s) is removed from the substrate after the formation of the fluid spots.
  • one or more sample restraining module(s) is mounted on the upper surface of the substrate in a void defined by the window region in the first/second patterned template layer(s).
  • sample restraining module(s) is then coupled to the substrate.
  • the assembly is subjected to three cycles of an elevated temperature of about 210 °C for 30 seconds plus cooling down to room temperature, thereby fusing the lower surface of the sample restraining module(s) with the upper surface of the substrate.
  • Samples in this case cells suspended by a cell adhesion medium or CAM, such as a saliva, an artificial saliva, or another medium containing mucins or other viscosity control agents to suspend the cells evenly
  • a cell adhesion medium or CAM such as a saliva, an artificial saliva, or another medium containing mucins or other viscosity control agents to suspend the cells evenly
  • the device is then centrifuged to settle the fluid spots of the samples on the substrate.
  • the sample restraining module(s) is then removed from the substrate, such as by a mechanical force, to expose the array of fluid spots.
  • Embodiment 1 A device, comprising: a substrate; and a sample restraining module above the substrate, the sample restraining module having an upper opening and a lower opening in fluid communication with each other via a passage; wherein the sample restraining module is arranged and disposed to direct a fluid introduced into the upper opening to an upper surface of the substrate, such that the fluid settles on the upper surface and forms a fluid droplet; and wherein a lower surface of the sample restraining module is in direct contact with the upper surface of the substrate to substantially seal a gap between the substrate and the sample restraining module and allow a region near the lower opening of the sample restraining module and the substrate to form a void to accommodate the formation of the fluid droplet.
  • Embodiment 2 The device of Embodiment 1, wherein the lower surface of the sample restraining module is adhered to or fused with the upper surface of the substrate.
  • Embodiment 3 The device of Embodiment 1, wherein the upper surface of the substrate is coated with a poly-L-lysine coating, a fibronectin coating, or a collagen coating.
  • Embodiment 4 The device of Embodiment 1, wherein the sample restraining module is made from a thermoplastic material.
  • Embodiment 5 The device of Embodiment 1, further comprising a first patterned template layer, wherein at least one of the following applies:
  • the first patterned template layer has a window region for hosting a plurality of sample restraining modules
  • the first patterned template layer has one or more openings, each of which hosts one sample restraining module.
  • Embodiment 6 The device of Embodiment 5, further comprising a second patterned template layer, wherein at least one of the following applies:
  • the second patterned template layer has a window region for hosting a plurality of sample restraining modules
  • the second patterned template layer has one or more openings, each of which hosts one sample restraining module.
  • Embodiment 7 The device of Embodiment 1, further comprising a wick above the substrate and having an opening, wherein the sample restraining module passes through the opening of the wick to be in direct contact with the substrate.
  • Embodiment 8 The device of Embodiment 7, wherein the wick absorbs a liquid in the fluid droplet and leaves a substance of interest in the fluid droplet on the upper surface of the substrate.
  • Embodiment 9 The device of Embodiment 1, wherein the sample restraining module comprises a filter such that a sample moving from the upper opening of the sample restraining module to the lower opening of the sample restraining module is filtered.
  • Embodiment 10 The device of Embodiment 9, wherein at least one of the following applies:
  • the filter layer removes a debris in the fluid, but does not remove a liquid and a substance of interest in the fluid;
  • the filter is capable of holding droplets of fluid on an upper surface thereof by surface tension prior to an application of a centrifugal force.
  • Embodiment 11 The device of claim 1, further comprising a lid above the sample restraining module that seals or covers the upper opening of the sample restraining module.
  • Embodiment 12 A method of processing a fluid sample with the device of claim 1, the method comprising: forming a droplet of the fluid sample on the upper surface of the substrate by introducing the fluid sample into the upper opening of the sample restraining module.
  • Embodiment 13 The method of Embodiment 12, wherein forming the droplet of the fluid sample on the upper surface of the substrate comprises subjecting the device holding the fluid sample to a centrifugal force.
  • Embodiment 14 The method of Embodiment 12, further comprising removing a liquid from the droplet of the fluid sample and leaving a substance of interest on a spot of the droplet.
  • Embodiment 15 The method of Embodiment 14, wherein at least one of the following applies:
  • the device further comprises a wick between the substrate and the first patterned template layer, the wick has an opening corresponding to the aperture in the first patterned template, and the wick absorbs the liquid from the droplet of the fluid sample.
  • Embodiment 16 A kit, comprising: a substrate; and a sample restraining module for being mounted on an upper surface of the substrate; wherein the sample restraining module has an upper opening and a lower opening in fluid communication with each other via a passage; wherein, when the sample restraining module is mounted on the upper surface of the substrate, a fluid introduced into the upper opening of the sample restraining module is able to settle on the upper surface of the substrate and form a fluid droplet; and wherein, when the sample restraining module is mounted on the upper surface of the substrate, a lower surface of the sample restraining module is in direct contact with the upper surface of the substrate to substantially seal a gap between the substrate and the sample restraining module and allow a region near the lower opening of the sample re
  • Embodiment 17 The kit of Embodiment 16, wherein the sample restraining module and the substrate are configured such that the lower surface of the sample restraining module is able to be adhered to or fused with the upper surface of the substrate.
  • Embodiment 18 The kit of Embodiment 16, wherein the upper surface of the substrate is coated with a poly-L-lysine coating, a fibronectin coating, or a collagen coating.
  • Embodiment 19 The kit of Embodiment 16, wherein the sample restraining module is made from a thermoplastic material.
  • Embodiment 20 The kit of Embodiment 16, further comprising a first patterned template layer, wherein at least one of the following applies:
  • the first patterned template layer has a window region for hosting a plurality of sample restraining modules
  • the first patterned template layer has one or more openings, each of which hosts one sample restraining module.
  • Embodiment 21 The kit of Embodiment 20, further comprising a second patterned template layer, wherein at least one of the following applies:
  • the second patterned template layer has a window region for hosting a plurality of sample restraining modules
  • the second patterned template layer has one or more openings, each of which hosts one sample restraining module.
  • Embodiment 22 The kit of Embodiment 16, further comprising a wick for being mounted above the substrate, wherein the wick has an opening, the opening allowing the sample restraining module to pass through the wick and directly contact the substrate.
  • Embodiment 23 The kit of Embodiment 22, wherein the wick absorbs a liquid in the fluid droplet and leaves a substance of interest in the fluid droplet on the upper surface of the substrate.
  • Embodiment 24 The kit of Embodiment 16, wherein the sample restraining module comprises a filter such that a sample moving from the upper opening of the sample restraining module to the lower opening of the sample restraining module is filtered.
  • Embodiment 25 The kit of Embodiment 24, wherein at least one of the following applies:
  • the filter layer removes a debris in the fluid, but does not remove a liquid and a substance of interest in the fluid;
  • the filter is capable of holding droplets of fluid on an upper surface thereof by surface tension prior to an application of a centrifugal force.
  • Embodiment 26 The kit of Embodiment 16, further comprising a lid for being mounted above the sample restraining module to seal or cover the upper opening of the sample restraining module.
  • First patterned template layer 130, 130’, 130”, 200, 300, 400, 500, 550, 600, 700, 800, 900, 1200, 1300, 1400, 1400’, 1600, 1650, 2202, 2202’
  • Apertures in first patterned template layer 132, 132’, 206, 306, 406, 606, 706, 806, 906, 1206, 1306, 1406, 1406’, 2206’
  • Alignment feature(s) in first patterned template layer 310a, 310b, 310c, 3 lOd, 410a, 410b, 410c, 510a, 510b, 560a, 560b, 910
  • Second patterned template layer 150, 150”, 1000, 1100, 1700, 1750, 2202, 2202’
  • Sample restraining module 190, 190”, 195, 195”, 2212, 2212’
  • Filter of sample restraining module 198 x???: Dimension of ??? in the x axis (e.g., X206 is the dimension of 206 in the x axis) y???: Dimension of ??? in the y axis (e.g., y206 is the dimension of 206 in the y axis) z???: Dimension of ??? in the z axis (e.g., Z200 is the dimension of 200 in the z axis) d???: Dimension of ??? in the xy plane (e.g., diameter or equivalent diameter) (e.g., deoe is the dimension of 606 in the xy plane) id???: Inner dimension of ??? in the xy plane (e.g., diameter or equivalent diameter) (e.g., id2208 is the inner dimension of 2208 in the xy plane)

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  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Hematology (AREA)
  • Clinical Laboratory Science (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Biochemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Pathology (AREA)
  • Sampling And Sample Adjustment (AREA)

Abstract

L'invention concerne un dispositif comprenant un substrat ; et un module de retenue d'échantillon au-dessus du substrat. Le module de retenue d'échantillon présente une ouverture supérieure et une ouverture inférieure en communication fluidique l'une avec l'autre par l'intermédiaire d'un passage. Un fluide introduit dans l'ouverture supérieure du module de retenue d'échantillon se dépose sur une surface supérieure du substrat et forme une gouttelette de fluide. Une surface inférieure du module de retenue d'échantillon est en contact direct avec la surface supérieure du substrat afin de fermer sensiblement de manière étanche un espace entre le substrat et le module de retenue d'échantillon et de permettre à une région proche de l'ouverture inférieure du module de retenue d'échantillon et au substrat de former un vide pour recevoir la formation de la gouttelette de fluide. L'invention concerne également un procédé d'utilisation du dispositif pour traiter un échantillon de fluide, ainsi qu'un kit d'assemblage du dispositif.
PCT/US2025/012863 2024-01-24 2025-01-24 Dispositifs, kits et procédés de traitement d'échantillons Pending WO2025160338A1 (fr)

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US202463624538P 2024-01-24 2024-01-24
US63/624,538 2024-01-24

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Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20100282608A1 (en) * 2007-09-04 2010-11-11 Advanced Liquid Logic, Inc. Droplet Actuator with Improved Top Substrate
US20140323317A1 (en) * 2006-01-11 2014-10-30 Raindance Technologies, Inc. Microfluidic devices and methods of use in the formation and control of nanoreactors
US20180071425A1 (en) * 2015-04-10 2018-03-15 The Regents Of The University Of California Switchable digital scent generation and release, and vapor and liquid delivery methods and systems
US20180228418A1 (en) * 2012-01-25 2018-08-16 Tasso, Inc. Methods, Systems, And Devices Relating To Open Microfluidic Channels
WO2022134986A1 (fr) * 2020-12-24 2022-06-30 佛山奥素博新科技有限公司 Procédé de génération de micro-gouttelettes et système de génération de micro-gouttelettes

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20140323317A1 (en) * 2006-01-11 2014-10-30 Raindance Technologies, Inc. Microfluidic devices and methods of use in the formation and control of nanoreactors
US20100282608A1 (en) * 2007-09-04 2010-11-11 Advanced Liquid Logic, Inc. Droplet Actuator with Improved Top Substrate
US20180228418A1 (en) * 2012-01-25 2018-08-16 Tasso, Inc. Methods, Systems, And Devices Relating To Open Microfluidic Channels
US20180071425A1 (en) * 2015-04-10 2018-03-15 The Regents Of The University Of California Switchable digital scent generation and release, and vapor and liquid delivery methods and systems
WO2022134986A1 (fr) * 2020-12-24 2022-06-30 佛山奥素博新科技有限公司 Procédé de génération de micro-gouttelettes et système de génération de micro-gouttelettes

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