WO2025153084A1 - Rna inhibitor for inhibiting expression of insulin-like growth factor 1 receptor - Google Patents
Rna inhibitor for inhibiting expression of insulin-like growth factor 1 receptorInfo
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- WO2025153084A1 WO2025153084A1 PCT/CN2025/073153 CN2025073153W WO2025153084A1 WO 2025153084 A1 WO2025153084 A1 WO 2025153084A1 CN 2025073153 W CN2025073153 W CN 2025073153W WO 2025153084 A1 WO2025153084 A1 WO 2025153084A1
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P25/00—Drugs for disorders of the nervous system
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P27/00—Drugs for disorders of the senses
- A61P27/02—Ophthalmic agents
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/115—Aptamers, i.e. nucleic acids binding a target molecule specifically and with high affinity without hybridising therewith ; Nucleic acids binding to non-nucleic acids, e.g. aptamers
Definitions
- the present application relates to the field of biomedicine, and specifically to an RNA inhibitor and a conjugate thereof for inhibiting the expression of insulin-like growth factor 1 receptor gene.
- RNA interference (RNAi) technology refers to the phenomenon of highly conserved, highly efficient and specific degradation of homologous mRNA induced by double-stranded RNA (dsRNA) during evolution. It is a biological process in which RNA molecules inhibit the expression of a certain gene by destroying specific mRNA. Since RNAi technology can specifically eliminate or shut down the expression of specific genes, it has quickly become one of the most popular research tools in the field of gene function research and gene therapy research, and has been widely used to explore gene function, metabolic diseases, infectious diseases and the treatment of malignant tumors.
- dsRNA double-stranded RNA
- Thyroid eye disease is an autoimmune disease caused by hyperthyroidism. It is caused by the body's own immune system attacking the tissues around and behind the eyes due to the activation of the IGF-1R-mediated signaling complex on the cells in the orbit by self-antigens.
- the disease is characterized by the increase in the volume of the extraocular muscles, adipose tissue and connective tissue, and produces symptoms such as dry eyes, bulging eyes, retraction of eyelids, diplopia, strabismus, tingling with a sense of gravel, easy tearing, redness and swelling, and difficulty in eye movement. Severe cases can lead to changes in appearance and impaired vision.
- IGF-1R Insulin-like growth factor 1 receptor
- IGF-1R hormone insulin-like growth factor 1 receptor
- Tepezza Teprotumumab
- TED chronic thyroid eye disease
- the drug is a fully human monoclonal antibody (mAb) and IGF-1R targeted inhibitor.
- mAb monoclonal antibody
- IGF-1R targeted inhibitor IGF-1R targeted inhibitor.
- Tepezza can effectively reduce eye bulging in addition to eliminating inflammation.
- Patients treated with Tepezza experienced an unprecedented reduction in proptosis, which previously could only be treated surgically after active disease had ended.
- Tepezza also had serious safety issues, with the most common adverse reactions including muscle spasms, hearing loss and hyperglycemia. These adverse reactions may be caused by systemic administration of the drug.
- siRNA targeting IGF-1R also has a wide range of potential applications in the field of tumor treatment.
- the present application provides an RNA inhibitor that inhibits the expression of the IGF-1R gene, providing an effective new therapy for thyroid eye disease, osteoarthritis, and neuropathic pain.
- IGF-1R is a tetrameric transmembrane receptor tyrosine kinase found on the surface of human cells and is a cell surface receptor for IGF-1.
- the RNA inhibitor of IGF-1R gene expression provided in the present application can destroy the function of IGF-1R mRNA as a translation template, inhibit the expression of IGF-1R protein, and alleviate and improve the symptoms of thyroid eye disease, osteoarthritis, and neuropathic pain.
- siRNA drug provided in the present application has one or more of the following therapeutic advantages: strong efficacy, small side effects, long duration of efficacy, low dosage, small injection reaction, and good expected patient compliance.
- siRNA drugs can improve drug accessibility and drug delivery efficiency through reasonable formulations.
- the antisense strand and the mRNA encoding IGF-1R form a complementary region starting from any of the following positions counting from the 5' end:
- nucleotide No. 5246 Nucleotide No. 5392, Nucleotide No. 5393, Nucleotide No. 6329, Nucleotide No. 6332, Nucleotide No. 6333, Nucleotide No. 6334 nucleotide No. 4, nucleotide No. 10215, nucleotide No. 10738, nucleotide No. 10740, nucleotide No. 10770, nucleotide No. 10772, nucleotide No. 10773, nucleotide No. 10946, nucleotide No. 10956, nucleotide No. 10957, nucleotide No.
- nucleotide No. 1541 nucleotide No. 2050, nucleotide No. 2055, nucleotide No. 2056, nucleotide No. 2233, nucleotide No. 2234, nucleotide No. 2456, nucleotide No. 2591, nucleotide No. 2603, nucleotide No. 2606, nucleotide No. 2609, nucleotide No. 2776, nucleotide No. 2890, nucleotide No. 2906 , nucleotide No. 2909, nucleotide No. 2957, nucleotide No. 2960, nucleotide No. 3008, nucleotide No.
- nucleotide No. 3398 nucleotide No. 3608, nucleotide No. 3609, nucleotide No. 3650, nucleotide No. 3660, nucleotide No. 3815, nucleotide No. 3882, nucleotide No. 3996, nucleotide No. 4067, nucleotide No. 4121, nucleotide No. 4122, nucleotide No. 4292, nucleotide No. 4293, nucleotide No. 4295, nucleotide No. 4516, nucleotide No. 4519, nucleotide No. 5163, nucleotide No. 5309, nucleotide No.
- the RNA inhibitor comprises a duplex selected from the group consisting of: ds-n1, ds-n2, ds-n3, ds-n4, ds-n5, ds-n6, ds-n7, ds-n8, ds-n9, ds-n10, ds-n11, ds-n12, ds-n13, ds-n14, ds-n15, ds-n16, ds-n17, ds-n18, ds-n19, ds-n20, ds-n21, ds-n22, ds-n23, ds-n24, ds-n25, ds-n26, ds-n27, ds-n28, ds-n29, ds-n30, ds-n31, ds-n32, ds-n33, ds-n34, ds-n31
- the RNA inhibitor comprises a duplex selected from the group consisting of ds-n17, ds-n23, ds-n31, ds-n39, ds-n45, ds-n58, ds-n60, ds-n64, ds-n67, ds-n68, ds-n73, ds-n74, ds-n76, ds-n77, ds-n80, ds-n81, ds-n83, ds-n84, ds-n86, ds-n88, ds-n89, ds-n98 , ds-n99, ds-n103, ds-n104, ds-n112, ds-n113, ds-n115, ds-n153, ds-n154, ds-n156, ds-n157, ds-n163, d
- the NA inhibitor comprises a duplex selected from the group consisting of ds-n17, ds-n23, ds-n31, ds-n39, ds-n45, ds-n58, ds-n60, ds-n64, ds-n67, ds-n68, ds-n73, ds-n74, ds-n76, ds-n77, ds-n80, ds-n81, ds-n83 , ds-n84, ds-n86, ds-n88, ds-n89, ds-n98, ds-n99, ds-n103, ds-n104, ds-n112, ds-n11 3. ds-n115, ds-n153, ds-n154, ds-n156, ds-n157, ds-n163, ds
- the RNA inhibitor is characterized in that the antisense strand further includes region B1 at the 3' end, and the sense strand further includes region A1 at the 5' end, wherein region A1 is 0-6 nucleotides and region B1 is 0-6 nucleotides.
- the RNA inhibitor is characterized in that the region B1 is 0, 1, 2, 3, 4, 5 or 6 nucleotides; preferably, the region B1 is 0 or 2 nucleotides.
- the RNA inhibitor is characterized in that the region A1 is 0, 1, 2, 3, 4, 5 or 6 nucleotides; preferably, the region A1 is 0 or 2 nucleotides.
- the RNA inhibitor is characterized in that the antisense strand comprises X2, Y, Z and N in sequence from 3' to 5' direction at the 5' end, wherein X2 and Y are independently A, U, modified A or modified U, respectively, the Z is G or modified G, and the N contains at least one nucleotide.
- the 3' or 5'-end of the antisense strand comprises a phosphate or a phosphate mimetic, or the 3' or 5'-end of the sense strand comprises a phosphate or a phosphate mimetic.
- the RNA inhibitor has an invAB modification at the 3' or 5' end of the antisense strand, or an invAB modification at the 3' or 5' end of the sense strand.
- the inverted abasic nucleotide or M06 is linked to the 3' or 5' end of the antisense strand or the 3' or 5' end of the sense strand via a phosphorothioate.
- the positive strand comprises a first sequence of 16-21 nt in length, wherein the first sequence comprises the following modifications: counting from the 5' end, nucleotides at positions 9, 10, and 11 have 2'-F modifications;
- the antisense strand comprises a second sequence of 16-21 nt in length, wherein the second sequence includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, a phosphorothioate linkage between the 2nd and 3rd nucleotides, and a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides.
- the RNA inhibitor has the following modified combinations:
- the positive strand comprises a first sequence of 16-21 nt in length, wherein the first sequence comprises the following modifications: counting from the 5' end, the 9th, 10th and 11th nucleotides are 2'-F modified, and the rest are 2'-Ome modified;
- the positive strand comprises a first sequence of 16-21 nt in length, wherein the first sequence comprises the following modifications: counting from the 5' end, nucleotides at positions 9, 10, and 11 have 2'-F modifications;
- the antisense strand comprises a second sequence of 16-21 nt in length, wherein the second sequence includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, a phosphorothioate linkage between the 2nd and 3rd nucleotides, and a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides.
- the antisense strand is 21 nt in length and includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, a phosphorothioate linkage between the 2nd and 3rd nucleotides, and a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides, and the rest are 2'-Ome modifications.
- the RNA inhibitor wherein the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:414-602.
- the sense strand comprises a third sequence of 18-21 nt in length, wherein the third sequence comprises the following modifications: counting from the 5' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the sense strand, there is a phosphorothioate connection between the 2nd and 3rd nucleotides, there is a 2'-F modification at the 9th, 10th, 11th, and 18th nucleotides of the sense strand, and the rest are 2'-OMe modified; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides;
- the antisense strand comprises a fourth sequence with a length of 19-26 nt, wherein the fourth sequence includes the following modifications: counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense strand are 2'-F modified, the rest are 2'-OMe modified, and there is a phosphorothioate connection between the 4th and 5th nucleotides; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides.
- the length of the third sequence is preferably 18nt, 19nt, 20nt, 21nt, 22nt, 21nt, preferably 21nt.
- the antisense chain is 26 nt in length. Counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense chain are modified with 2'-F, and the rest are modified with 2'-OMe. There is a phosphorothioate linkage between the 4th and 5th nucleotides. Counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
- the RNA inhibitor wherein the antisense strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:813-827.
- the RNA inhibitor wherein the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:603-617.
- the RNA inhibitor comprises a duplex selected from the following:
- the target tissue is eye tissue, joint tissue, central nervous tissue, peripheral nervous tissue, tumor, liver tissue, kidney tissue, muscle tissue, adipose tissue.
- the ocular tissue is retinal ganglion, endothelial cells, peripheral ocular muscle, or peripheral ocular fat.
- the internal position is on a nucleobase, a sugar ring, a methylphosphonate bond, a phosphorothioate diester bond, or a phosphodiester bond.
- the delivery system is a lipophilic structure
- the lipophilic structure comprises a lipophilic group and a linker
- the lipophilic group is connected to the double-stranded ribonucleic acid through the linker.
- the lipophilic structure is selected from aliphatic, alicyclic and polyaliphatic compounds.
- the lipophilic structure contains saturated or unsaturated C16 or C22.
- the linker is selected from a single bond, an ether, a thioether, a urea, a carbonate, an amine, an amide, a maleimide-thioether, a disulfide, a phosphodiester, a sulfonamide bond, a product of a click reaction, and a carbamate.
- the delivery system is conjugated to the 5' end and/or 3' end of the antisense strand or antisense nucleic acid fragment.
- the two ligands are the same or different.
- the two ligands are the same or different.
- the number of delivery systems is 1, 2, 3, 4, 5, or 6.
- the antisense strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:822-827.
- the present application provides a pharmaceutical composition
- a pharmaceutical composition comprising the RNA inhibitor, and/or a physiologically acceptable excipient and/or carrier and/or diluent.
- the pharmaceutically acceptable carrier includes or is selected from aqueous carriers, liposomes, high molecular polymers or polypeptides.
- the present application provides an RNA inhibitor targeting IGF-1R and a pharmaceutical composition thereof for use in the preparation of a drug for treating IGF-1R related diseases or pathologies; preferably, the RNA inhibitor is siRNA; more preferably, the siRNA is administered to a local or lesion area tissue of a subject in need.
- the IGF-1R-related disease or pathology comprises a disease or symptom associated with elevated IGF-1R levels.
- the IGF-1R-related disease or pathology comprises thyroid eye disease, osteoarthritis, and neuropathic pain.
- the present application provides a method for preventing or treating an IGF-1R-related disease or symptom, comprising administering an effective amount of an RNA inhibitor and a pharmaceutical composition thereof to a subject in need thereof.
- the RNA inhibitor and the pharmaceutical composition thereof are the RNA inhibitor or the pharmaceutical composition.
- the local or focal area tissue of the subject in need thereof includes eye tissue, joint tissue, central nervous tissue, peripheral nervous tissue, tumor, liver tissue, kidney tissue, muscle tissue, or adipose tissue.
- the eye tissue is the optic nerve, trabecular meshwork, proximal canal tissue, ganglion, episcleral vein, Schlemm's canal or peripheral eye tissue.
- the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue; preferably, the central nervous tissue comprises spinal cord tissue and brain tissue; preferably, the peripheral nervous tissue comprises intra-articular nervous tissue and muscle nervous tissue; preferably, the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
- FIG2 shows the structure of the 3′ end or 5′ end of the sense strand or antisense strand of the RNA inhibitor described in the present application.
- any variable e.g., a substituent R, such as a nucleic acid being modified
- its definition in each case is independent.
- the group may be optionally substituted by up to two Rs, and each case has independent options.
- each nucleotide is optionally modified independently, and the type and amount of modification of each nucleotide may be the same or different.
- RNA inhibitor in this application, the terms “RNA inhibitor”, “iRNA”, “siRNA”, “RNAi agent”, “iRNA agent” and “RNA interfering agent” are used interchangeably and generally refer to an agent comprising RNA as defined in the terms of this application, which can mediate targeted cleavage of RNA transcripts by forming an RNA-induced silencing complex (RISC) in cells.
- RISC RNA-induced silencing complex
- the RNA inhibitor directs the sequence-specific degradation of mRNA via a process called RNA interference (RNAi).
- RNA inhibitor described in the present application can regulate or inhibit gene expression of the IGF-1R gene in cells, and in some embodiments, the cells can be cells of mammalian subjects.
- the RNA inhibitor can regulate or inhibit the mRNA sequence of the IGF-1R gene (NM_000875.5 Homo sapiens insulin-like growth factor 1 receptor), and the mRNA sequence includes the sequence shown in SEQ ID NO:828.
- the "RNA inhibitor" used in the present application is a single-stranded siRNA (ssRNAi), which can be introduced into a cell or organism to inhibit the target mRNA.
- the single-stranded RNA inhibitor can bind to the RISC endonuclease Argonaute 2, which then cleaves the target mRNA.
- Single-stranded RNA inhibitors are generally 15 to 30 nucleotides and are chemically modified. The design and testing of single-stranded siRNAs are described in U.S. Patent No. 8,101,348 and Lima et al. (2012) Cell 150: 883-894, the entire contents of each of which are incorporated herein by reference. Any antisense nucleotide sequence described in this application can be used as a single-stranded siRNA described in this application or chemically modified by the method described in Lima et al. (2012) Cell 150: 883-894.
- the "RNA inhibitor" used in the present application is shRNA.
- shRNA i.e., short hairpin RNA
- shRNA molecules are encoded in a DNA gene expression vector under the control of an RNA polymerase III promoter (e.g., U6 promoter).
- the "RNA inhibitor” used in the present application is a miRNA.
- miRNA or “microRNA” is used herein according to its common meaning in the art, and refers to a small, non-protein coding RNA molecule that is expressed in a variety of eukaryotic organisms, including mammals, and participates in RNA-based gene regulation. Mature fully processed miRNAs are about 15 to about 30 nucleotides in length.
- a representative set of known endogenous miRNA species are described in the publicly available miRBase sequence database, described in Griffith-Jones et al., Nucleic Acids Research, 2004, 32: D109-D111 and Griffith-Jones et al., Nucleic Acids Research, 2006, 34: D 140-D144, and accessible on the World Wide Web at the Wellcome Trust Sanger Institute website.
- the mature fully processed miRNAs publicly available on the miRBase sequence database are incorporated herein by reference.
- a representative set of miRNAs is also included in Table 1 below this article. Each mature miRNA is partially complementary to one or more messenger RNA (mRNA) molecules that are targets of the miRNA, thereby regulating the expression of target-associated genes.
- mRNA messenger RNA
- the "RNA inhibitor" used in the present application is an ASO.
- ASO i.e., antisense nucleic acid
- used herein refers to a nucleic acid molecule having a sense strand and/or antisense strand of an "siRNA duplex" that binds to a target RNA through RNA-RNA or RNA-DNA or RNA-PNA (protein nucleic acid; Egholm et al., 1993 Nature 365, 566) interactions, and alters the activity of the target RNA through spatial interactions or through RNase H-mediated target recognition (for review, see Stein and Cheng, 1993 Science 261, 1004 and Woolf et al., U.S. Patent No. 5,849,902).
- antisense molecules are complementary to target sequences along a single adjacent sequence of the antisense molecule.
- the antisense molecule can bind to a substrate so that the substrate molecule forms a ring, and/or the antisense molecule can bind so that the antisense molecule forms a ring.
- an antisense molecule can be complementary to two (or even more) non-adjacent substrate sequences, or two (or even more) non-adjacent sequence portions of an antisense molecule can be complementary to a target sequence or both.
- Antisense oligonucleotides can include one or more RNase H activation regions that can activate RNase H cleavage of the target RNA.
- Antisense DNA can be chemically synthesized or genetically expressed using single-stranded DNA gene expression vectors or their equivalents.
- Antisense molecules of the present invention can be chemically modified as generally known in the art or as described herein.
- the "RNA inhibitor” used in the present application is a double-stranded RNA, and is referred to herein as a “siRNA duplex", “double-stranded RNA inhibitor", “double-stranded siRNA molecule", “double-stranded siRNA” or “dsRNA”.
- siRNA duplex refers to a complex of ribonucleic acid molecules having a duplex structure comprising two antiparallel and partially complementary nucleic acid chains, which have two chains in “sense” and "antisense” orientations relative to the target RNA (i.e., the IGF-1R gene).
- the siRNA duplex directs the sequence-specific degradation of mRNA (such as the mRNA sequence of the IGF-1R gene) via a process called RNA interference (RNAi).
- RNAi RNA interference
- RNA inhibitors In general, most of the nucleotides of each chain of RNA inhibitors are ribonucleotides. In the absence of description, they are ribonucleotides. But as described in detail herein, each or both of the two chains can also include one or more non-ribonucleotides, such as a deoxyribonucleotide and/or a modified nucleotide.
- RNA inhibitors can include chemically modified ribonucleotides. These modifications can include all types of modifications disclosed herein or known in the art. Any such modification as used in RNA inhibitor molecules is encompassed by "RNA inhibitors" for the purpose of this specification and claims.
- the duplex structure can be any length that allows for specific degradation of the desired target RNA by the RISC pathway, and can be within the length range of about 19 to 36 base pairs, for example, about 19-30 base pairs in length, for example, about 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 or 36 base pairs in length. Ranges and lengths intermediate to the above ranges and lengths are also included as part of the present application.
- the RNA inhibitor of the present application is a dsRNA having 15-23 nucleotides in each chain, which interacts with a target RNA sequence (e.g., an IGF-1R gene) to guide the cutting of the target RNA.
- a target RNA sequence e.g., an IGF-1R gene
- the RNA inhibitor of the present application is a dsRNA of 24-30 nucleotides, which interacts with a target RNA sequence (e.g., an mRNA sequence of an IGF-1R gene) to guide the cutting of the target RNA.
- a target RNA sequence e.g., an mRNA sequence of an IGF-1R gene
- the term "antisense strand” generally refers to a strand on an RNA inhibitor (e.g., a duplex siRNA) that is substantially complementary to a target nucleic acid (e.g., an mRNA sequence of a target genomic sequence, including mRNA precursors and mRNA molecules, for example, an mRNA sequence of an IGF-1R gene).
- a target nucleic acid e.g., an mRNA sequence of a target genomic sequence, including mRNA precursors and mRNA molecules, for example, an mRNA sequence of an IGF-1R gene.
- complementary region used in the present application generally refers to a region on the antisense strand that is substantially complementary to the (mRNA sequence of an IGF-1R gene) used in the present application. When the complementary region is not completely complementary, the mismatch may be in the interior or terminal regions of the molecule. Generally, the most tolerated mismatch is in the terminal region, for example, within 5, 4, 3, or 2 nucleotides of the 5' end
- mismatch refers to situations such as pairing of non-adenine (A) with thymine (T), pairing of non-adenine (A) with uracil (U), pairing of non-guanine (G) with cytosine (C), no hydrogen bond formation between bases of relative nucleotides, and lack of bases between relative nucleotides.
- the term "at least" preceding a number or a series of numbers includes the numbers adjacent to the term “at least”, and all subsequent numbers or integers logically included, as clear from the context.
- the number of nucleotides in a nucleic acid molecule must be an integer.
- “at least 19 nucleotides in a nucleic acid molecule of 21 nucleotides” means that 19, 20 or 21 nucleotides have the indicated properties.
- Antisense strand or antisense nucleic acid fragment and sense strand or sense nucleic acid fragment are provided.
- the present application provides an RNA inhibitor for inhibiting the expression of insulin-like growth factor 1 receptor (IGF-1R) gene, comprising an antisense strand, wherein the antisense strand forms a complementary region with at least 15 consecutive nucleotides in a sequence encoding IGF-1R (SEQ ID NO: 828), wherein the complementary region has 0, 1, 2, 3, 4 or 5 mismatches, and preferably the length of the duplex complementary region is 15-30 nucleotide pairs, more preferably 17-23 nucleotide pairs.
- IGF-1R insulin-like growth factor 1 receptor
- the length of the duplex complementary region can be 17 nucleotide pairs, 18 nucleotide pairs, 19 nucleotide pairs, 20 nucleotide pairs, 21 nucleotide pairs, 22 nucleotide pairs, or 23 nucleotide pairs.
- the RNA inhibitor comprises a single-stranded oligonucleotide or double-stranded ribonucleic acid (dsRNA) molecule for inhibiting the expression of the IGF-1R gene in a cell, such as a cell of a subject (e.g., a mammal).
- the dsRNA comprises an antisense strand or an antisense nucleic acid fragment having a complementary region complementary to at least a portion of the mRNA formed in the expression of the IGF-1R gene.
- the complementary region is about 12-30 nucleotides in length (e.g., about 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13 or 12 nucleotides in length).
- dsRNA includes two RNA chains, which can complement and hybridize to form a duplex structure (complementary region) under the conditions of dsRNA use.
- One chain of dsRNA (antisense strand or antisense nucleic acid fragment) includes a complementary region that is substantially complementary and usually completely complementary to the antisense strand. It can be derived from the sequence of mRNA formed during IGF-1R gene expression.
- the other chain (sense strand or sense nucleic acid fragment) includes a region complementary to the antisense strand or antisense nucleic acid fragment, so that when combined under suitable conditions, the two chains can hybridize and form a duplex structure.
- the length of the duplex structure is 12 to 30 base pairs.
- the complementary region to is 12 to 30 nucleotides in length, for example, at 15-29, 15-28, 15-27, 15-26, 15-25, 15-24, 15-23, 15-22, 15-21, 15-20, 15-19, 15-18, 15-17, 18-30, 18-29, 18-28, 18-27, 18-26, 18-25, 18-24, 18-23, 18-22, 18-21, 18-20, 19-30, 19-2 27, 21-26, 21-25, 21-24, 21-23, or 21-22 nucleotides in length.
- the dsRNA is about 19 to about 23 nucleotides in length, or about 24 to about 30 nucleotides in length.
- the length of the dsRNA is sufficient to serve as a substrate for the Dicer enzyme.
- dsRNAs greater than about 21-23 nucleotides in length can be used as substrates for Dicer.
- the region of the RNA targeted for cutting is typically a portion of a larger RNA molecule (typically an mRNA molecule).
- a "portion" of a target is a continuous nucleotide of an mRNA target that is long enough to allow it to be a substrate for RNAi-guided cutting (i.e., cutting via the RISC pathway).
- the complementary region is the major functional portion of the dsRNA, e.g., a duplex region of about 19 to about 30 base pairs, e.g., about 15-29, 15-28, 15-27, 15-26, 15-25, 15-24, 15-23, 15-22, 15-21, 15-20, 15-19, 15-18, 15-17, 18-30, 18-29, 18-28, 18-27, 18-26, 18-25, 18-24, 18-23, 18-22, 18-21 21-29, 21-28, 21-27, 21-26, 21-25, 21-24, 21-23, or 21-22 base pairs.
- the sense strand or sense nucleic acid fragment and the antisense strand or antisense nucleic acid fragment are each independently 19-30 nucleotides.
- the sense strand or sense nucleic acid fragment and the antisense strand or antisense nucleic acid fragment are each independently 17-25 nucleotides.
- the sense strand or sense nucleic acid fragment and the antisense strand or antisense nucleic acid fragment are each independently 19-23 nucleotides.
- the total length of the sense strand is 15-30 nucleotides, preferably the total length of the sense strand is 16-23 nucleotides, and more preferably the total length of the sense strand is 19, 20 or 21 nucleotides.
- the total length of the antisense strand is 19-30 nucleotides, preferably the total length of the antisense strand is 19-27 nucleotides, and more preferably the total length of the antisense strand is 21, 22, 23, 24, 25, 26 or 27 nucleotides.
- the sense chain or sense nucleic acid fragment is selected from any one of SEQ ID NO: 1-198 or a sequence that differs therefrom by no more than 3 nucleotides.
- the sense strand or sense nucleic acid fragment of the RNA inhibitor is selected from sequences in Table 1 that differ by one, two, or three nucleotides, such as 15, 16, 17, 18, 19, or 20 consecutive nucleotides.
- the antisense strand or antisense nucleic acid fragment is selected from any one of SEQ ID NO: 199-413 or at least 15 consecutive nucleotide sequences that differ from it by no more than 3 nucleotides, for example, 15, 16, 17, 18, 19 or 20 consecutive nucleotides.
- the antisense strand or antisense nucleic acid fragment of the RNA inhibitor is selected from at least 15 consecutive nucleotide sequences in which each sequence in Table 1 differs by one, two or three nucleotides, such as 15, 16, 17, 18, 19 or 20 consecutive nucleotides.
- the sense strand and antisense strand each independently optionally comprise a 3' or 5' overhang of 1, 2, or 3 nucleotides.
- both the sense strand and the antisense strand have 3' overhangs of 1-3 nucleotides in length, or the sense strand has 3' or 5' overhangs of 1-3 nucleotides in length, or the antisense strand has 3' or 5' overhangs of 1-3 nucleotides in length.
- the RNA inhibitor described in the present application has a specific structure near its 5' end and 3' end, as shown in Figure 2.
- the antisense strand comprises a cleavage region
- the cleavage region comprises a nucleotide sequence represented by formula (I)
- cleavage occurs between X2 and Y, wherein X2 is the 5'-most nucleotide of the second chain, Y and Z are the two 3'-most nucleotides of the 5' extension, and Z is a guanine nucleotide (G), a natural analog of a guanine nucleotide (G), a non-natural analog of a guanine nucleotide (G), an adenine nucleotide (A), a natural analog of adenine nucleotide (A), or a non-natural analog of adenine nucleotide (A).
- Z is guanine nucleotide (G), a natural analog of guanine nucleotide (G), or a non-natural analog of guanine nucleotide (G).
- the cleavage region further comprises a nucleotide N1, wherein N1 is the third nucleotide from the 3' end of the 5' extension, and the cleavage region comprises a nucleotide sequence represented by formula (II),
- the length of the fragment N is 1-10 nucleotides, preferably 1-5 nucleotides, and more preferably 1 nucleotide.
- the sense strand or sense nucleic acid fragment and antisense strand of the RNA inhibitor are selected from at least 15 consecutive nucleotide sequences in which each sequence in Table 1 differs by one, two or three nucleotides, for example, 15, 16, 17, 18, 19 or 20 consecutive nucleotides.
- the sense strand and antisense strand of the RNA inhibitor may be modified without affecting its activity or even enhancing its activity, wherein the nucleotides may have a modifying group, and the entire strand or a portion thereof may be modified.
- one or more nucleotides on the sense strand and/or antisense strand are modified to form modified nucleotides.
- lowercase letters (a, u, c, g, t, etc.) indicate that the nucleotide represented by its corresponding uppercase letter (A, U, C, G, and T, etc.) is modified by 2'-O-methyl (2'-OMe).
- M06 modification refers to the bonding of a 5' or 3' end of a monomer (such as a nucleotide) to a
- a monomer such as a nucleotide
- M06 It is M06 monomer
- (M06) is represented by Bonded to a nucleotide.
- nucleotides in the small inhibitory nucleic acid molecule described herein may be natural or unmodified nucleotides, or at least one nucleotide may be a modified nucleotide, wherein the modification is one or a combination of the following modifications:
- the chemical modification of the present invention is well known to those skilled in the art, and the modification of the phosphodiester bond refers to the modification of the oxygen in the phosphodiester bond, including phosphorothioate modification and borylated phosphate modification. Both modifications can stabilize the siRNA structure and maintain high specificity and high affinity of base pairing.
- the ribose modification refers to the modification of the 2'-OH in the pentose of the nucleotide, that is, introducing certain substituents at the hydroxyl position of the ribose, for example, 2'-fluoro modification, 2'-oxymethyl modification, 2'-oxyethylenemethoxy modification, 2,4'-dinitrophenol modification, locked nucleic acid (LNA), 2'-amino modification, 2'-deoxy modification.
- 2'-fluoro modification 2'-oxymethyl modification, 2'-oxyethylenemethoxy modification, 2,4'-dinitrophenol modification, locked nucleic acid (LNA), 2'-amino modification, 2'-deoxy modification.
- the base modification refers to modification of the base of the nucleotide, for example, 5'-bromouracil modification, 5'-iodouracil modification, N-methyluracil modification, and 2,6-diaminopurine modification.
- the modification of the ribose comprises fluorine substitution and/or methoxy substitution of the 2'-OH.
- the modification of the ribose further comprises modification by UNA, LNA or GNA.
- LNA refers to a bicyclic nucleoside analogue comprising a C2*-C4* diradical (bridge), and is referred to as a "locked nucleic acid”. It may refer to an LNA monomer, or, when used in the context of an "LNA oligonucleotide", LNA refers to an oligonucleotide containing one or more such bicyclic nucleotide analogues.
- a bicyclic nucleoside analogue is an LNA nucleotide, and these terms may therefore be used interchangeably, and in such embodiments, both are characterized by the presence of a linking group (such as a bridge) between C2' and C4' of the ribose sugar ring.
- UNA locked nucleic acid
- GNA glycol nucleic acid
- GNA is a chemical substance similar to DNA or RNA, but with a different composition and does not exist in any currently known natural organism.
- GNA contains an acyclic three-carbon propylene glycol (1,2-propanediol) backbone, which replaces the (deoxy)ribose of DNA and RNA to form the simplest chemically stable nucleic acid structure.
- S-(GNA) structure is shown below.
- the RNA inhibitor wherein at least one nucleotide in the RNA inhibitor is a chemically modified nucleotide.
- the RNA inhibitor wherein all nucleotides in the RNA inhibitor are chemically modified nucleotides.
- the RNA inhibitor wherein the modification comprises a combination of one or more of the following: 2'-OMe (2'-O-methyl) modification, 2'-F (2'-deoxy-2'-fluoro) modification, 2'-O-MOE (2'-O-methoxyethyl) modification, 2'-deoxy (2'-d) modification, 5'-morpholine (5'-Mo) modification, unlocked nucleic acid (UNA) modification, glycol nucleic acid (GNA) modification, locked nucleic acid (LNA) modification, tricyclic DNA (tcDNA) modification, (S)-constrained ethyl bicyclic nucleic acid ((S)-cEt-BNA) modification, phosphorothioate (PS) modification, phosphorodithioate (PS2) modification, methylphosphonate (MP) modification, methoxypropylmethylphosphonate (MOP) modification, peptide nucleic acid (PNA) modification, 5'-(E)-vin
- VP N6-methyladenosine
- m6A N6-methyladenosine
- m5C 5-methylcytidine
- m3U 3-methyluridine
- m5U 5-methylureidine
- s2U 2-thioureidine
- propyne uridine 5-pU
- inverted abasic nucleotide (invAb) modification nucleotide replacement with an inverted abasic nucleotide (rF) modification
- nucleotide replacement with a (S)-glycerol nucleic acid modification preferably 2'-OMe modification, 2'-F modification, 2'-deoxy modification
- VP modification 5'-MP modification, PS modification, PS
- the 9th nucleotide of the sense strand is modified with 2'-F.
- the 10th nucleotide of the sense strand is modified with 2'-F.
- the 11th nucleotide of the sense strand is modified with 2'-F.
- the RNA inhibitor when the length of the sense strand is 21 nt, counting from the 5' end, the 9th, 10th, and 11th nucleotides of the sense strand are modified with 2'-F, and the rest are modified with 2'-OMe.
- the RNA inhibitor when the length of the positive strand is 21 nt, counting starts from the 5' end, wherein the 5' end of the first nucleotide of the positive strand has an invAB modification.
- the inverted abasic nucleotide is linked to the 5' end of the first nucleotide of the sense strand via a phosphorothioate.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 5' end, has a phosphorothioate linkage between the 1st and 2nd nucleotides of the antisense strand.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 5' end, has a phosphorothioate linkage between the second and third nucleotides of the antisense strand.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 5' end, has a phosphorothioate linkage between the 3rd and 4th nucleotides of the antisense strand.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 3' end, has a phosphorothioate linkage between the 1st and 2nd nucleotides of the antisense strand.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 5' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the antisense strand, a phosphorothioate connection between the 2nd and 3rd nucleotides, and a phosphorothioate connection between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the antisense strand.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the second nucleotide of the antisense strand.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the 3rd nucleotide of the antisense strand.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the 4th nucleotide of the antisense strand.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the 12th nucleotide of the antisense strand.
- the RNA inhibitor when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the 14th nucleotide of the antisense strand.
- the RNA inhibitor when the antisense chain is 21 nt in length, counting from the 5' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the antisense chain, a phosphorothioate connection between the 2nd and 3rd nucleotides, and a phosphorothioate connection between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the antisense chain; and the nucleotides at positions 2, 3, 4, 12, 14, and 16 of the antisense chain are 2'-F modified, and the rest are 2'-OMe modified.
- the RNA inhibitor in certain embodiments, the RNA inhibitor,
- the RNA inhibitor when the length of the positive strand is 21 nt, counting from the 5' end, there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
- the RNA inhibitor when the antisense strand is 26 nt in length, counting from the 5' end, has a 2'-F modification at the second nucleotide of the antisense strand.
- the RNA inhibitor when the antisense strand is 26 nt in length, counting from the 5' end, has a 2'-F modification at the 17th nucleotide of the antisense strand.
- the RNA inhibitor when the antisense strand is 26 nt in length, counting from the 5' end, has a 2'-F modification at the 19th nucleotide of the antisense strand.
- the RNA inhibitor when the antisense strand is 26 nt in length, counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense strand are modified with 2'-F, and the rest are modified with 2'-OMe.
- the RNA inhibitor wherein when the antisense strand is 26 nt in length, counting from the 5' end, there is a phosphorothioate linkage between the 4th and 5th nucleotides.
- the RNA inhibitor wherein when the antisense strand is 26 nt in length, counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides.
- the RNA inhibitor wherein when the antisense strand is 26 nt in length, counting from the 3' end, there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
- the antisense strand of the RNA inhibitor when the antisense strand of the RNA inhibitor is 26 nt in length, counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense strand are 2'-F modified, and the rest are 2'-OMe modified, and there is a phosphorothioate connection between the 4th and 5th nucleotides; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides.
- the RNA inhibitor wherein
- the antisense chain is 26 nt in length, counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense chain are modified with 2'-F, and the rest are modified with 2'-OMe, and there is a phosphorothioate connection between the 4th and 5th nucleotides; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides.
- the RNA inhibitor, wherein the 5'-end of the antisense strand comprises a phosphate or a phosphate mimetic.
- the RNA inhibitor wherein the phosphate mimetic comprises 5'-(E)-vinylphosphonate, 5'-methylphosphonate, (S)-5'-C-methyl analog and 5'-phosphorothioate (5'-PS).
- the RNA inhibitor, wherein the 5'-end of the antisense strand comprises (M06):
- the RNA inhibitor, wherein (M06) is linked to the 5'-end of the antisense strand via a phosphate or phosphorothioate bond.
- the RNA inhibitor has an invAB modification at the 5'-end of the first nucleotide of the antisense strand.
- the inverted abasic nucleotide is linked to the 5' end of the first nucleotide of the antisense strand via a phosphorothioate.
- lowercase letters “g”, “c”, “a” and “u” represent 2'-methoxy modified nucleotides
- uppercase letters "Gf”, “Cf”, “Af” and “Uf” represent 2'-fluoro modified nucleotides
- * indicates that the two adjacent nucleotides to the left and right of * are connected by thiophosphate groups.
- (D02)*, (InvAB)*, (M06)*, *(D02), *(InvAB), *(M06) represent that D02, invAB, M06 are connected to nucleotides through thiophosphates.
- invAB refers to an inverted abasic nucleotide bonded to the 5' end or 3' end of the nucleotide.
- M06 refers to a structure bonded to the 5' end or 3' end of a monomer (such as a nucleotide) as described below:
- [D02] refers to a structure bonded to the 5' or 3' end as follows:
- RNA inhibitors of the present application relates to the manner in which the interfering nucleic acid is coupled to a ligand to enhance the stability, activity, cellular distribution or cellular uptake of the RNAi agent.
- the distribution, targeting or stability of the RNA inhibitor is altered by introducing a ligand for a target tissue receptor.
- a specific ligand can provide enhanced affinity for a selected target (e.g., a molecule, cell or cell type, compartment (e.g., cell or organ compartment, body tissue, organ or region)) compared to a species in which the ligand is not present.
- the ligand can also include a targeting group, such as a cell or tissue targeting agent that is combined with a specified cell type such as a kidney cell, such as a lectin, a glycoprotein, a lipid or a protein, such as an antibody.
- a targeting group such as a cell or tissue targeting agent that is combined with a specified cell type such as a kidney cell, such as a lectin, a glycoprotein, a lipid or a protein, such as an antibody.
- the targeting group can be thyrotropin, melanocyte stimulating hormone, a lectin, a glycoprotein, a surfactant protein A, a mucin carbohydrate, a multivalent lactose, a multivalent galactose, N-acetyl-galactosamine, N-acetyl-glucosamine multivalent mannose, a multivalent fucose, a glycosylated polyamino acid, a multivalent galactose, transferrin, a bisphosphonate, polyglutamic acid, polyaspartic acid, a lipid, cholesterol, a steroid, bile acid, folic acid, vitamin B12, vitamin A, biotin or an RGD peptide or an RGD peptide mimetic.
- the ligand is a multivalent galactose, such as N-acetyl-galactosamine.
- the sense strand and antisense strand comprised by the present application's RNA inhibitor can be conveniently and routinely prepared by the known techniques of solid phase synthesis. Any other method known in the art for this type of synthesis, such as liquid phase synthesis or fermentation, can be used additionally or alternatively. It is also known to use similar techniques to prepare other oligonucleotides (such as thiophosphates and alkylated derivatives).
- the oligonucleotides or linked nucleotides of the present application can be synthesized by an automated synthesizer using a phosphoramidite method derived from ligand-nucleoside phosphoramidite monomers.
- the ligand conjugation method of the present invention is to couple the ligand structure to the 5' end and/or 3' end of the antisense chain, and/or the 5' end and/or 3' end of the sense chain.
- the ligand structure can be coupled to the 5’ end and/or the 3’ end of the sense strand; or the ligand structure can be coupled to the 5’ end of the antisense strand and the ligand structure is coupled to the 3’ end of the sense strand; or the ligand structure can be coupled to the 3’ end of the antisense strand and the ligand is coupled to the 5’ end of the sense strand; or the ligand structure is coupled to the 5’ end and 3’ end of the sense strand; or the ligand structure is coupled to the 3’ end of the sense strand.
- the ligand described in the present application is [L96], as shown in the following structural formula:
- the ligand described in the present application is [D02], as shown in the following structural formula:
- [D02] represents the residue of D02 monomer.
- the D02 monomer structure is
- [D02] is Bonded to a nucleotide.
- the present application also includes a pharmaceutical composition comprising the RNA inhibitor of the present application or a pharmaceutically acceptable salt thereof.
- RNA inhibitor as described herein and a pharmaceutically acceptable pharmaceutical excipient.
- compositions comprising RNA inhibitors can be used to prevent and/or treat IGF-1R related disorders, e.g., thyroid eye disease, osteoarthritis, neuropathic pain.
- Such pharmaceutical compositions are formulated according to the mode of delivery.
- An example scheme is a composition formulated for systemic administration with parenteral delivery, e.g., subcutaneous (SC), intramuscular (IM) or intravenous (IV) delivery.
- the pharmaceutical compositions of the present application can be administered at a dose sufficient to inhibit IGF-1R gene expression.
- the pharmaceutical composition further comprises a delivery vehicle (eg, nanoparticles, dendrimers, polymers, liposomes, or cationic delivery systems).
- a delivery vehicle eg, nanoparticles, dendrimers, polymers, liposomes, or cationic delivery systems.
- the delivery vehicle comprises nanolipids that are capable of forming liposome-nucleic acid nanoparticles with nucleic acid molecules.
- the present application provides the use of the aforementioned RNA inhibitor for inhibiting IGF-1R gene expression or a pharmaceutically acceptable salt thereof and the aforementioned pharmaceutical composition in the preparation of a drug for preventing or treating a disease or pathology or reducing the risk of a disease or pathology.
- the disease or pathology comprises a disease or pathology associated with normal or elevated levels of IGF-1R.
- the present application provides a method for preventing or treating a disease, condition or syndrome, comprising administering to a subject in need thereof an effective amount of the aforementioned RNA inhibitor for inhibiting IGF-1R gene expression, a pharmaceutically acceptable salt thereof or the aforementioned pharmaceutical composition.
- the method comprises administering to a local or focal area of tissue in a subject in need thereof.
- the local or focal area tissue of the subject in need thereof includes eye tissue, joint tissue, central nervous tissue, peripheral nervous tissue, tumor, liver tissue, kidney tissue, muscle tissue, or adipose tissue.
- the eye tissue is an optic nerve, trabecular meshwork, proximal canal tissue, ganglion, episcleral vein, Schlemm's canal or peripheral eye tissue.
- the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue; preferably, the central nervous tissue comprises spinal cord tissue and brain tissue; preferably, the peripheral nervous tissue comprises intra-articular nervous tissue and muscle nervous tissue; preferably, the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
- the ocular tissue is retinal ganglion, endothelial cell, periocular muscle or periocular fat.
- the present application provides a method for inhibiting IGF-1R mRNA or gene expression in cells, tissues or subjects, which comprises administering to a subject in need thereof an effective amount of the aforementioned RNA inhibitor that inhibits IGF-1R gene expression, a pharmaceutically acceptable salt thereof or the aforementioned pharmaceutical composition.
- Cells suitable for treatment using the methods of the present application can be any cells that genetically express the IGF-1R gene.
- Cells suitable for use in the methods of the present application can be mammalian cells, and when contacted with cells that genetically express the IGF-1R gene, the RNAi agent inhibits the gene expression of the IGF-1R gene (e.g., human, primate, non-primate or rat IGF-1R gene) by at least about 50%, for example, as determined by PCR or branched DNA (bDNA)-based methods, or by protein-based methods, such as immunofluorescence analysis, Western blotting or flow cytometry.
- bDNA branched DNA
- the level of IGF-1R expressed by a cell or cell population can be determined by any method known in the art for evaluating mRNA gene expression. For example, qRT-PCR evaluates the reduction of gene expression. The reduction of protein production can be evaluated by any method known in the art, for example, ELISA.
- a puncture liver biopsy sample is used as a tissue material for monitoring the reduction of IGF-1R gene or protein gene expression.
- a blood sample is used as a subject sample for monitoring the reduction of IGF-1R protein expression.
- RNA inhibitor of embodiment 16 comprising a duplex selected from the group consisting of ds-n23, ds-n58, ds-n67, ds-n86, ds-n89, ds-n98, ds-n99, ds-n103, ds-n190, ds-n198, and ds-n113.
- RNA inhibitor according to embodiment 21 is characterized in that the antisense chain further includes region X2 at the 5’ end, and the sense chain or sense nucleic acid further includes region X1 at the 3’ end, and region X1 and region X2 are complementary to each other.
- RNA inhibitor according to any one of embodiments 39-41 having the following modified combinations
- RNA inhibitor according to any one of embodiments 28-42, wherein the antisense chain comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:624-812.
- the sense strand comprises a third sequence of 18-21 nt in length, wherein the third sequence comprises the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides of the sense strand, there is a phosphorothioate linkage between the 2nd and 3rd nucleotides, there is a phosphorothioate linkage between the 9th, 10th, 11th, and 18th nucleotides of the sense strand
- the antisense strand comprises a fourth sequence with a length of 19-26 nt, wherein the fourth sequence includes the following modifications: counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense strand are 2'-F modified, the rest are 2'-OMe modified, and there is a phosphorothioate connection between the 4th and 5th nucleotides; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides.
- RNA inhibitor according to embodiment 46 wherein the length of the third sequence is preferably 18nt, 19nt, 20nt, 21nt, 22nt, 21nt, preferably 21nt.
- RNA inhibitor according to embodiment 47 wherein the length of the fourth sequence is preferably 19nt, 20nt, 21nt, 22nt, 23nt, 24nt, 25nt, 26nt, preferably 26nt.
- the length of the sense strand is 21 nt. Counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides of the sense strand, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
- the 9th, 10th, 11th, and 18th nucleotides of the sense strand are 2'-F modified, and the rest are 2'-OMe modified; counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides;
- the antisense chain is 26 nt in length. Counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense chain are modified with 2'-F, and the rest are modified with 2'-OMe. There is a phosphorothioate linkage between the 4th and 5th nucleotides. Counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
- RNA inhibitor according to any one of embodiments 31-49, wherein the antisense chain comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:813-827.
- RNA inhibitor according to any one of embodiments 31-50, wherein the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO: 603-617.
- RNA inhibitor of any one of embodiments 31-51 comprising a duplex selected from the group consisting of ds-m190, ds-m191, ds-m192, ds-m193, ds-m194, ds-m195, ds-m196, ds-m197, ds-m198, ds-m199, ds-m200, ds-m201, ds-m202, ds-m203, and ds-m204.
- the eye tissue is optic nerve, trabecular meshwork, proximal canal tissue, ganglion, episcleral vein, Schlemm's canal or peripheral eye tissue
- the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue
- the central nervous tissue comprises spinal cord tissue and brain tissue
- the peripheral nervous tissue comprises intra-articular nervous tissue and muscle nervous tissue
- the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
- RNA inhibitor of embodiment 55 wherein the eye tissue is retinal ganglion, endothelial cells, periocular muscle, or periocular fat.
- RNA inhibitor of embodiment 57 wherein the internal position is on a nucleobase, a sugar ring, a methylphosphonate bond, a phosphorothioate diester bond, or a phosphodiester bond.
- RNA inhibitor according to embodiment 59, wherein the lipophilic structure is selected from aliphatic, alicyclic and polyaliphatic compounds.
- RNA inhibitor according to embodiment 60 wherein the lipophilic structure contains saturated or unsaturated C16 or C22.
- RNA inhibitor according to any one of embodiments 59-61, wherein the linker is selected from a single bond, an ether, a thioether, a urea, a carbonate, an amine, an amide, a maleimide-thioether, a disulfide, a phosphodiester, a sulfonamide bond, a product of a click reaction, and a carbamate.
- RNA inhibitor according to embodiments 53-62, wherein the delivery system is
- RNA inhibitor according to any one of embodiments 53-64, wherein the delivery system is conjugated to the 5' end and/or 3' end of the sense strand or sense nucleic acid fragment.
- RNA inhibitor according to any one of embodiments 53-66 wherein the delivery system is conjugated to the 3’ end of the antisense chain or the antisense nucleic acid fragment, and the ligand is conjugated to the 5’ end of the sense chain or the sense nucleic acid fragment, and the two ligands are the same or different.
- RNA inhibitor according to any one of embodiments 53-67 wherein the delivery system is conjugated to the 5’ end of the antisense strand or antisense nucleic acid fragment, and the ligand is conjugated to the 5’ end of the sense strand or sense nucleic acid fragment, and the two ligands are the same or different.
- the number of delivery systems is 1, 2, 3, 4, 5 or 6.
- the eye tissue is an optic nerve, trabecular meshwork, proximal canal tissue, ganglion, episcleral vein, Schlemm's canal or peripheral eye tissue
- the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue
- the central nervous tissue comprises spinal cord tissue and brain tissue
- the peripheral nervous tissue comprises intra-articular nervous tissue and muscle nervous tissue
- the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
- ARPE-19 cells were cultured in DMEM medium containing 10% fetal bovine serum in a 5% CO2, 37°C constant temperature incubator, and transfected when the cells were in the logarithmic growth phase and in good condition.
- ARPE-19 cells were inoculated into 96-well cell plates, plated, and double-stranded siRNA was transfected into Hela cells using lipofectamine RNAiMAX and Opti-MEM according to the instructions. The final concentrations of siRNA in this test were 30nM, 0.5nM, and 0.05nM.
- duplex siRNA selected according to Example 1 was further verified for its IC50 effect on mature human adipocytes.
- RNAlater 2 tubes of eye muscle and 1 tube of fat
- the homogenized tubes containing the tissues were temporarily stored on dry ice for quick freezing and then placed in a refrigerator at ⁇ -60°C.
- PBS was administered to the left eye, and different doses (2 mg/kg, 10 mg/kg) of the test article Z4 were administered to the right eye.
- IOP intraocular pressure
- Flash VEP is performed as follows:
- RNA precipitation can be seen at the bottom of the tube, and the supernatant is discarded.
- After discarding the supernatant add 1000 ⁇ L 75% ethanol solution (pre-cooled at low temperature), vortex to mix, and centrifuge (centrifugation conditions: 4°C, 12000 ⁇ g, 10min). After centrifugation, discard the supernatant, air-dry at room temperature for 10min, then add 40 ⁇ L DEPC-treated water (pre-heated at 55°C), vortex to mix, and obtain RNA.
- RNA can be directly used for RT-qPCR or stored at ⁇ -60°C. The expiration date of RNA is 1 year.
- eyeballs (with periocular tissues) of 4 mice were collected from each group for fixation and paraffin embedding, and the proliferation and cell infiltration of periocular tissues were quantified (H&E staining, UCPI and CD3 staining).
- Histological evaluation was performed by two blinded observers. Images were scored according to the OARSI cartilage histological scoring system by assessing the extent of cartilage damage (depth of cartilage damage) and stage (extent of joint involvement). Briefly, femurs and tibiae were evaluated separately, and each site was scored according to the grade of cartilage damage (0–6 points, 0 is intact surface and 6 is severe deformation) and the stage of cartilage damage (0–4 points, 0 is normal joint and 4 is more than 50% joint damage). The total score was the product of grade and stage (0 represents normal joint; 24 represents severe osteoarthritis). Twelve sections were scored for each rat, and no rats were excluded.
- Intra-articular administration of mouse IGF1R siRNA can significantly inhibit the expression of IGF1R mRNA and reduce the OARSI score, indicating that intra-articular administration of the compounds involved in the present invention can effectively treat osteoarthritis in humans.
- Acclimation period The rats were allowed to acclimate to the test area for at least three days before measurements were taken.
- the lateral plantar aspect was stimulated vertically using von Frey fibers of different strengths (0.6 g, 1.0 g, 1.4 g, 2.0 g, 4.0 g, 6.0 g, 8.0 g, 10.0 g, and 15.0 g). Measurements were taken one day before surgery and on the 4th, 7th, 10th, and 14th days after surgery.
- the 4.0 g fiber was selected first, and then the 50% PWT threshold of the rats was calculated according to the “up-down method”. The proportion of paw withdrawal in the rats to increasing mechanical stimulation was measured.
- the three groups of rats were evaluated sequentially, and five measurements were taken on each side (5 min intervals between each). Finally, the five paw withdrawal response rates, i.e., the proportion of paw withdrawal produced by the rats to the 6.0 g mechanical stimulation, were calculated.
- the rat's foot response to acetone was measured.
- Precooled acetone 100 ⁇ L was applied to the surface of the sole of the foot while the rat was in a quiet state.
- the time of positive reactions was recorded for 30 seconds.
- Each foot was tested three times (5 minutes apart each time), and the average of the three measurements was recorded as the reaction time of that side.
- Intrathecal administration of mouse IGF1R siRNA can significantly inhibit the expression of IGF1R mRNA, while improving PWT and cold allodynia threshold scores and inhibiting pain response, indicating that intrathecal administration of the compounds involved in the present invention can effectively treat neuropathic pain in humans.
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Abstract
Description
本申请涉及生物医药领域,具体的涉及一种用于抑制胰岛素样生长因子1受体基因表达的RNA抑制剂及其缀合体。The present application relates to the field of biomedicine, and specifically to an RNA inhibitor and a conjugate thereof for inhibiting the expression of insulin-like growth factor 1 receptor gene.
RNA干扰(RNA interference,RNAi)技术是指是指在进化过程中高度保守的、由双链RNA(double-stranded RNA,dsRNA)诱发的、同源mRNA高效特异性降解的现象,RNA分子通过破坏特定的mRNA,以抑制某种基因表达的生物学过程。由于使用RNAi技术可以特异性剔除或关闭特定基因的基因表达,该技术迅速成为基因功能研究和基因治疗研究领域最受关注的研究工具之一,已被广泛用于探索基因功能,代谢性疾病和传染性疾病及恶性肿瘤的治疗领域。RNA interference (RNAi) technology refers to the phenomenon of highly conserved, highly efficient and specific degradation of homologous mRNA induced by double-stranded RNA (dsRNA) during evolution. It is a biological process in which RNA molecules inhibit the expression of a certain gene by destroying specific mRNA. Since RNAi technology can specifically eliminate or shut down the expression of specific genes, it has quickly become one of the most popular research tools in the field of gene function research and gene therapy research, and has been widely used to explore gene function, metabolic diseases, infectious diseases and the treatment of malignant tumors.
甲状腺眼病(TED)是由甲状腺功能亢进导致的自身免疫性疾病,由自身抗原激活眼眶内细胞上IGF-1R介导的信号复合物,身体自身免疫系统攻击眼睛周围和后面组织引起。该疾病的特征是眼外肌、脂肪组织和结缔组织体积增大,并产生眼睛干涩、眼球外凸、眼睑内缩、复视、斜视、伴有沙砾感的刺痛、容易流泪、红肿以及眼球运动困难等症状,严重可导致容貌改变和视力受损。Thyroid eye disease (TED) is an autoimmune disease caused by hyperthyroidism. It is caused by the body's own immune system attacking the tissues around and behind the eyes due to the activation of the IGF-1R-mediated signaling complex on the cells in the orbit by self-antigens. The disease is characterized by the increase in the volume of the extraocular muscles, adipose tissue and connective tissue, and produces symptoms such as dry eyes, bulging eyes, retraction of eyelids, diplopia, strabismus, tingling with a sense of gravel, easy tearing, redness and swelling, and difficulty in eye movement. Severe cases can lead to changes in appearance and impaired vision.
IGF-1R(Insulin-like growth factor 1receptor,胰岛素样生长因子1受体)是一种在人类细胞表面发现的四聚体跨膜受体酪氨酸激酶,是IGF-1(激素胰岛素样生长因子1)的细胞表面受体。研究表明,IGF-1R广泛基因表达于正常人体组织,并在甲状腺眼病(TED)中高基因表达。IGF-1R的激活可刺激细胞增殖、存活、转化、转移和血管生成,而抑制IGF-1R可缓解并改善甲状腺眼病(TED)症状。Horizon Therapeutics公司开发的全球第一款治疗慢性(非活动性)甲状腺眼病(TED)药物Tepezza(Teprotumumab)经美国FDA批准在美国上市。该药物是一种全人单克隆抗体(mAb)和IGF-1R靶向抑制剂。与其他生物制剂如抗CD20抗体治疗TAO只能减轻炎症等的疗效不同,Tepezza除了能消除炎症外还能有效减少眼球凸出。接受Tepezza治疗的患者眼球突出发生了前所未有的减少,而这之前只有在活动性疾病结束后才能通过手术治疗。但是Tepezza也有较严重的安全性问题,其最常见的不良反应包含肌肉痉挛、听力损失和高血糖。这些不良反应的原因可能是由于全身性给予药物造成的。IGF-1R (Insulin-like growth factor 1 receptor) is a tetrameric transmembrane receptor tyrosine kinase found on the surface of human cells and is the cell surface receptor for IGF-1 (hormone insulin-like growth factor 1). Studies have shown that IGF-1R is widely expressed in normal human tissues and highly expressed in thyroid eye disease (TED). Activation of IGF-1R can stimulate cell proliferation, survival, transformation, metastasis and angiogenesis, while inhibition of IGF-1R can alleviate and improve TED symptoms. Tepezza (Teprotumumab), the world's first drug for the treatment of chronic (inactive) thyroid eye disease (TED) developed by Horizon Therapeutics, has been approved by the US FDA for marketing in the United States. The drug is a fully human monoclonal antibody (mAb) and IGF-1R targeted inhibitor. Unlike other biologics such as anti-CD20 antibodies that can only reduce inflammation in the treatment of TAO, Tepezza can effectively reduce eye bulging in addition to eliminating inflammation. Patients treated with Tepezza experienced an unprecedented reduction in proptosis, which previously could only be treated surgically after active disease had ended. However, Tepezza also had serious safety issues, with the most common adverse reactions including muscle spasms, hearing loss and hyperglycemia. These adverse reactions may be caused by systemic administration of the drug.
开发局部给药的IGF-1R siRNA是目前单抗安全性问题的解决方案。siRNA类型药物由于起长效性优势可以带来更长的给药周期,从而带来更好的依从性。除此之外,IGF-1R也是肿瘤生长及发展的重要驱动因素,开发靶向IGF-1R的siRNA对于肿瘤治疗领域也有广泛的潜在应用。The development of locally administered IGF-1R siRNA is a solution to the current safety issues of monoclonal antibodies. Due to the long-term effect, siRNA-type drugs can bring a longer dosing cycle, thereby bringing better compliance. In addition, IGF-1R is also an important driving factor for tumor growth and development. The development of siRNA targeting IGF-1R also has a wide range of potential applications in the field of tumor treatment.
本申请提供了一种抑制IGF-1R基因表达的RNA抑制剂,为甲状腺眼病、骨性关节炎、神经性疼痛提供了一种有效的新疗法。IGF-1R是一种在人类细胞表面发现的四聚体跨膜受体酪氨酸激酶,是IGF-1的细胞表面受体。本申请提供的IGF-1R基因表达的RNA抑制剂可以破坏IGF-1R mRNA作为翻译模板的功能,抑制IGF-1R蛋白表达,缓解并改善甲状腺眼病、骨性关节炎、神经性疼痛症状。本申请提供的siRNA药物具有以下一种或多种治疗优势:药效强、副作用小,药效持续时间长、剂量低、注射反应小和预期患者依从性好。另一方面,siRNA药物通过合理的制剂可以提高药物可及性,提高药物的递送效率。The present application provides an RNA inhibitor that inhibits the expression of the IGF-1R gene, providing an effective new therapy for thyroid eye disease, osteoarthritis, and neuropathic pain. IGF-1R is a tetrameric transmembrane receptor tyrosine kinase found on the surface of human cells and is a cell surface receptor for IGF-1. The RNA inhibitor of IGF-1R gene expression provided in the present application can destroy the function of IGF-1R mRNA as a translation template, inhibit the expression of IGF-1R protein, and alleviate and improve the symptoms of thyroid eye disease, osteoarthritis, and neuropathic pain. The siRNA drug provided in the present application has one or more of the following therapeutic advantages: strong efficacy, small side effects, long duration of efficacy, low dosage, small injection reaction, and good expected patient compliance. On the other hand, siRNA drugs can improve drug accessibility and drug delivery efficiency through reasonable formulations.
一方面,本申请提供一种抑制胰岛素样生长因子1受体(IGF-1R)基因表达的RNA抑制剂,包含反义链,所述反义链与编码IGF-1R的mRNA(SEQ ID NO:828)中连续的至少15个核苷酸形成互补区域,所述互补区域具有0、1、2、3、4或5个错配,优选的所述互补区域长度为15-30个核苷酸对,更优选的为17-23个核苷酸对。On the one hand, the present application provides an RNA inhibitor for inhibiting the expression of the insulin-like growth factor 1 receptor (IGF-1R) gene, comprising an antisense chain, wherein the antisense chain forms a complementary region with at least 15 consecutive nucleotides in the mRNA encoding IGF-1R (SEQ ID NO: 828), and the complementary region has 0, 1, 2, 3, 4 or 5 mismatches. Preferably, the complementary region is 15-30 nucleotide pairs in length, and more preferably 17-23 nucleotide pairs in length.
在一些实施方式中,其中所述反义链和编码IGF-1R的mRNA(SEQ ID NO:828)中从5’端开始计数的以下任意一个位置为起始连续15、16、17、18、19、20、21、22或23个核苷酸形成互补区域:In some embodiments, the antisense strand and the mRNA encoding IGF-1R (SEQ ID NO: 828) form a complementary region starting from any of the following positions counting from the 5' end:
第1118位核苷酸、第1120位核苷酸、第1154位核苷酸、第1367位核苷酸、第1407位核苷酸、第1415位核苷酸、第1532位核苷酸、第1625位核苷酸、第1627位核苷酸、第1628位核苷酸、第1631位核苷酸、第3356位核苷酸、第3357位核苷酸、第3359位核苷酸、第3792位核苷酸、第4198位核苷酸、第4200位核苷酸、第4208位核苷酸、第4685位核苷酸、第5246位核苷酸、第5392位核苷酸、第5393位核苷酸、第6329位核苷酸、第6332位核苷酸、第6333位核苷酸、第6334位核苷酸、第10215位核苷酸、第10738位核苷酸、第10740位核苷酸、第10770位核苷酸、第10772位核苷酸、第10773位核苷酸、第10946位核苷酸、第10956位核苷酸、第10957位核苷酸、第1418位核苷酸、第1541位核苷酸、第2050位核苷酸、第2055位核苷酸、第2056位核苷酸、第2233位核苷酸、第2234位核苷酸、第2456位核苷酸、第2591位核苷酸、第2603位核苷酸、第2606位核苷酸、第2609位核苷酸、第2776位核苷酸、第2890位核苷酸、第2906位核苷酸、第2909位核苷酸、第2957位核苷酸、第2960位核苷酸、第3008位核苷酸、第3195位核苷酸、第3398位核苷酸、第3608位核苷酸、第3609位核苷酸、第3650位核苷酸、第3660位核苷酸、第3815位核苷酸、第3882位核苷酸、第3996位核苷酸、第4067位核苷酸、第4121位核苷酸、第4122位核苷酸、第4292位核苷酸、第4293位核苷酸、第4295位核苷酸、第4516位核苷酸、第4519位核苷酸、第5163位核苷酸、第5309位核苷酸、第5310位核苷酸、第5377位核苷酸、第5380位核苷酸、第5381位核苷酸、第5663位核苷酸、第5700位核苷酸、第5711位核苷酸、第5712位核苷酸、第5721位核苷酸、第5896位核苷酸、第5898位核苷酸、第6203位核苷酸、第6236位核苷酸、第6237位核苷酸、第6240位核苷酸、第6245位核苷酸、第6288位核苷酸、第6299位核苷酸、第6305位核苷酸、第6309位核苷酸、第6310位核苷酸、第6343位核苷酸、第6363位核苷酸、第6365位核苷酸、第6366位核苷酸、第6373位核苷酸、第6379位核苷酸、第6381位核苷酸、第6431位核苷酸、第6434位核苷酸、第6496位核苷酸、第6518位核苷酸、第6755位核苷酸、第6760位核苷酸、第6883位核苷酸、第6885位核苷酸、第6947位核苷酸、第6948位核苷酸、第6949位核苷酸、第6952位核苷酸、第6953位核苷酸、第6954位核苷酸、第7574位核苷酸、第7621位核苷酸、第7764位核苷酸、第7830位核苷酸、第7906位核苷酸、第8540位核苷酸、第8836位核苷酸、第8892位核苷酸、第8975位核苷酸、第8977位核苷酸、第9163位核苷酸、第9175位核苷酸、第9186位核苷酸、第9265位核苷酸、第9267位核苷酸、第9340位核苷酸、第9347位核苷酸、第9352位核苷酸、第9356位核苷酸、第9478位核苷酸、第9480位核苷酸、第9606位核苷酸、第9611位核苷酸、第9634位核苷酸、第9680位核苷酸、第9681位核苷酸、第9724位核苷酸、第9725位核苷酸、第9814位核苷酸、第10015位核苷酸、第10016位核苷酸、第10189位核苷酸、第10244位核苷酸、第10266位核苷酸、第10490位核苷酸、第10526位核苷酸、第10528位核苷酸、第10534位核苷酸、第10535位核苷酸、第10537位核苷酸、第10540位核苷酸、第10541位核苷酸、第10679位核苷酸、第10694位核苷酸、第10717位核苷酸、第10728位核苷酸、第10729位核苷酸、第10730位核苷酸、第10754位核苷酸、第10763位核苷酸、第10766位核苷酸、第10942位核苷酸、第11034位核苷酸、第11078位核苷酸、第11126位核苷酸、第11156位核苷酸、第11159位核苷酸、第11160位核苷酸、第11292位核苷酸、第11340位核苷酸、第11344位核苷酸、第11383位核苷酸、第11395位核苷酸、第11789位核苷酸、第11864位核苷酸、第11865位核苷酸、第11939位核苷酸、第12092位核苷酸、第12116位核苷酸、第12130位核苷酸、第12154位核苷酸、第12156位核苷酸、第12177位核苷酸、第12195位核苷酸、第1164位核苷酸、第1163位核苷酸、第1162位核苷酸、第1161位核苷酸、第1160位核苷酸、第1165位核苷酸、第1166位核苷酸、第1167位核苷酸、第1168位核苷酸。Nucleotide No. 1118, Nucleotide No. 1120, Nucleotide No. 1154, Nucleotide No. 1367, Nucleotide No. 1407, Nucleotide No. 1415, Nucleotide No. 1532, Nucleotide No. 1625, Nucleotide No. 1627, Nucleotide No. 1628, Nucleotide No. 1631, Nucleotide No. 3356, Nucleotide No. 3357, Nucleotide No. 3359, Nucleotide No. 3792, Nucleotide No. 4198, Nucleotide No. 4200, Nucleotide No. 4208, Nucleotide No. 4685, Nucleotide No. 5246, Nucleotide No. 5392, Nucleotide No. 5393, Nucleotide No. 6329, Nucleotide No. 6332, Nucleotide No. 6333, Nucleotide No. 6334 nucleotide No. 4, nucleotide No. 10215, nucleotide No. 10738, nucleotide No. 10740, nucleotide No. 10770, nucleotide No. 10772, nucleotide No. 10773, nucleotide No. 10946, nucleotide No. 10956, nucleotide No. 10957, nucleotide No. 1418, nucleotide No. 1541, nucleotide No. 2050, nucleotide No. 2055, nucleotide No. 2056, nucleotide No. 2233, nucleotide No. 2234, nucleotide No. 2456, nucleotide No. 2591, nucleotide No. 2603, nucleotide No. 2606, nucleotide No. 2609, nucleotide No. 2776, nucleotide No. 2890, nucleotide No. 2906 , nucleotide No. 2909, nucleotide No. 2957, nucleotide No. 2960, nucleotide No. 3008, nucleotide No. 3195, nucleotide No. 3398, nucleotide No. 3608, nucleotide No. 3609, nucleotide No. 3650, nucleotide No. 3660, nucleotide No. 3815, nucleotide No. 3882, nucleotide No. 3996, nucleotide No. 4067, nucleotide No. 4121, nucleotide No. 4122, nucleotide No. 4292, nucleotide No. 4293, nucleotide No. 4295, nucleotide No. 4516, nucleotide No. 4519, nucleotide No. 5163, nucleotide No. 5309, nucleotide No. 5310, nucleotide No. 5377, nucleotide No. 53 nucleotide at position 80, nucleotide at position 5381, nucleotide at position 5663, nucleotide at position 5700, nucleotide at position 5711, nucleotide at position 5712, nucleotide at position 5721, nucleotide at position 5896, nucleotide at position 5898, nucleotide at position 6203, nucleotide at position 6236, nucleotide at position 6237, nucleotide at position 6240, nucleotide at position 6245, nucleotide at position 6288, nucleotide at position 6299, nucleotide at position 6305, nucleotide at position 6309, nucleotide at position 6310, nucleotide at position 6343, nucleotide at position 6363, nucleotide at position 6365, nucleotide at position 6366, nucleotide at position 6373, nucleotide at position 6379, nucleotide at position 6381 Acid, nucleotide No. 6431, nucleotide No. 6434, nucleotide No. 6496, nucleotide No. 6518, nucleotide No. 6755, nucleotide No. 6760, nucleotide No. 6883, nucleotide No. 6885, nucleotide No. 6947, nucleotide No. 6948, nucleotide No. 6949, nucleotide No. 6952, nucleotide No. 6953, nucleotide No. 6954, nucleotide No. 7574, nucleotide No. 7621, nucleotide No. 7764, nucleotide No. 7830, nucleotide No. 7906, nucleotide No. 8540, nucleotide No. 8836, nucleotide No. 8892, nucleotide No. 8975, nucleotide No. 8977, nucleotide No. 9163, nucleotide No. 9 nucleotide No. 175, nucleotide No. 9186, nucleotide No. 9265, nucleotide No. 9267, nucleotide No. 9340, nucleotide No. 9347, nucleotide No. 9352, nucleotide No. 9356, nucleotide No. 9478, nucleotide No. 9480, nucleotide No. 9606, nucleotide No. 9611, nucleotide No. 9634, nucleotide No. 9680, nucleotide No. 9681, nucleotide No. 9724, nucleotide No. 9725, nucleotide No. 9814, nucleotide No. 10015, nucleotide No. 10016, nucleotide No. 10189, nucleotide No. 10244, nucleotide No. 10266, nucleotide No. 10490, nucleotide No. 10526 , nucleotide No. 10528, nucleotide No. 10534, nucleotide No. 10535, nucleotide No. 10537, nucleotide No. 10540, nucleotide No. 10541, nucleotide No. 10679, nucleotide No. 10694, nucleotide No. 10717, nucleotide No. 10728, nucleotide No. 10729, nucleotide No. 10730, nucleotide No. 10754, nucleotide No. 10763, nucleotide No. 10766, nucleotide No. 10942, nucleotide No. 11034, nucleotide No. 11078, nucleotide No. 11126, nucleotide No. 11156, nucleotide No. 11159, nucleotide No. 11160, nucleotide No. 11292, Nucleotide at position 11340, nucleotide at position 11344, nucleotide at position 11383, nucleotide at position 11395, nucleotide at position 11789, nucleotide at position 11864, nucleotide at position 11865, nucleotide at position 11939, nucleotide at position 12092, nucleotide at position 12116, nucleotide at position 12130, nucleotide at position 12154, nucleotide at position 12156, nucleotide at position 12177, nucleotide at position 12195, nucleotide at position 1164, nucleotide at position 1163, nucleotide at position 1162, nucleotide at position 1161, nucleotide at position 1160, nucleotide at position 1165, nucleotide at position 1166, nucleotide at position 1167, and nucleotide at position 1168.
在一些实施方式中,其中所述反义链和编码IGF-1R的mRNA(SEQ ID NO:828)从5’端开始计数的第1160位核苷酸和第1188位核苷酸之间,第6235位核苷酸和第6465位核苷酸之间的序列形成互补区域,或第6329位核苷酸和第6455位核苷酸之间的序列形成互补区域。In some embodiments, the antisense strand and the mRNA encoding IGF-1R (SEQ ID NO:828) form a complementary region between the 1160th nucleotide and the 1188th nucleotide, between the 6235th nucleotide and the 6465th nucleotide, or between the 6329th nucleotide and the 6455th nucleotide, counting from the 5' end.
在一些实施方式中,其中所述RNA抑制剂为核糖核酸,进一步的,所述RNA抑制剂为单链核糖核酸或双链核糖核酸。In some embodiments, the RNA inhibitor is ribonucleic acid, and further, the RNA inhibitor is single-stranded ribonucleic acid or double-stranded ribonucleic acid.
在一些实施方式中,其中所述RNA抑制剂为反义寡核苷酸(ASO)、shRNA、miRNA或siRNA。In some embodiments, the RNA inhibitor is an antisense oligonucleotide (ASO), shRNA, miRNA or siRNA.
在一些实施方式中,其包含能够与所述反义链形成互补双链的正义链,其中所述反义链包含与正义链序列中连续的至少15个核苷酸形成双链体互补区域的序列,所述双链体互补区域具有0、1、2、3、4或5个错配,优选的所述双链体互补区域长度为15-30个核苷酸对,更优选的为17-23个核苷酸对。In some embodiments, it comprises a sense strand capable of forming a complementary double strand with the antisense strand, wherein the antisense strand comprises a sequence that forms a duplex complementary region with at least 15 consecutive nucleotides in the sense strand sequence, and the duplex complementary region has 0, 1, 2, 3, 4 or 5 mismatches, and preferably the length of the duplex complementary region is 15-30 nucleotide pairs, more preferably 17-23 nucleotide pairs.
在一些实施方式中,其中所述正义链和反义链存在于两条不同的核酸链上,优选的所述RNA抑制剂为siRNA或shRNA,更优的选所述RNA抑制剂为siRNA。In some embodiments, wherein the sense strand and the antisense strand are present on two different nucleic acid strands, preferably the RNA inhibitor is siRNA or shRNA, and more preferably the RNA inhibitor is siRNA.
在一些实施方式中,其中所述正义链和反义链存在于同一条核酸链上,优选的所述RNA抑制剂为shRNA。In some embodiments, wherein the sense strand and the antisense strand are present on the same nucleic acid strand, preferably the RNA inhibitor is shRNA.
在一些实施方式中,其中所述正义链总长度为15-50个核苷酸,优选的所述正义链总长度为16-30个核苷酸,更优选的所述正义链总长度为17、18、19、20或21个核苷酸。In some embodiments, the total length of the sense strand is 15-50 nucleotides, preferably the total length of the sense strand is 16-30 nucleotides, and more preferably the total length of the sense strand is 17, 18, 19, 20 or 21 nucleotides.
在一些实施方式中,其中所述反义链总长度为19-50个核苷酸,优选的所述反义链总长度为19-30个核苷酸,更优选的所述反义链总长度为21、22、23、24、25、26或27个核苷酸。In some embodiments, the total length of the antisense strand is 19-50 nucleotides, preferably the total length of the antisense strand is 19-30 nucleotides, and more preferably the total length of the antisense strand is 21, 22, 23, 24, 25, 26 or 27 nucleotides.
在一些实施方式中,其中所述正义链和反义链分别独立地任选包含1、2或3个核苷酸的3’或5’突出端。In some embodiments, the sense strand and antisense strand each independently optionally comprise a 3' or 5' overhang of 1, 2 or 3 nucleotides.
在一些实施方式中,其中所述正义链和反义链都具有长度为1-3个核苷酸的3’突出端,或所述正义链具有长度为1-3个核苷酸的3’或5’突出端,或所述反义链具有长度为1-3个核苷酸的3’或5’突出端。In some embodiments, both the sense strand and the antisense strand have a 3' overhang of 1-3 nucleotides in length, or the sense strand has a 3' or 5' overhang of 1-3 nucleotides in length, or the antisense strand has a 3' or 5' overhang of 1-3 nucleotides in length.
在一些实施方式中,所述的RNA其中所述反义链包含如SEQ ID NO:199-400任意一项所述的序列中连续的至少15个核苷酸。In some embodiments, the antisense strand of the RNA comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:199-400.
在一些实施方式中,所述的RNA抑制剂,其中所述正义链包含如SEQ ID NO:1-198任意一项所述的序列中连续的至少15个核苷酸。In some embodiments, the RNA inhibitor, wherein the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:1-198.
在一些实施方式中,所述的RNA抑制剂,其包含选自如下所示的双链体:ds-n1、ds-n2、ds-n3、ds-n4、ds-n5、ds-n6、ds-n7、ds-n8、ds-n9、ds-n10、ds-n11、ds-n12、ds-n13、ds-n14、ds-n15、ds-n16、ds-n17、ds-n18、ds-n19、ds-n20、ds-n21、ds-n22、ds-n23、ds-n24、ds-n25、ds-n26、ds-n27、ds-n28、ds-n29、ds-n30、ds-n31、ds-n32、ds-n33、ds-n34、ds-n35、ds-n36、ds-n37、ds-n38、ds-n39、ds-n40、ds-n41、ds-n42、ds-n43、ds-n44、ds-n45、ds-n46、ds-n47、ds-n48、ds-n49、ds-n50、ds-n51、ds-n52、ds-n53、ds-n54、ds-n55、ds-n56、ds-n57、ds-n58、ds-n59、ds-n60、ds-n61、ds-n62、ds-n63、ds-n64、ds-n65、ds-n66、ds-n67、ds-n68、ds-n69、ds-n70、ds-n71、ds-n72、ds-n73、ds-n74、ds-n75、ds-n76、ds-n77、ds-n78、ds-n79、ds-n80、ds-n81、ds-n82、ds-n83、ds-n84、ds-n85、ds-n86、ds-n87、ds-n88、ds-n89、ds-n90、ds-n91、ds-n92、ds-n93、ds-n94、ds-n95、ds-n96、ds-n97、ds-n98、ds-n99、ds-n100、ds-n101、ds-n102、ds-n103、ds-n104、ds-n105、ds-n106、ds-n107、ds-n108、ds-n109、ds-n110、ds-n111、ds-n112、ds-n113、ds-n114、ds-n115、ds-n116、ds-n117、ds-n118、ds-n119、ds-n120、ds-n121、ds-n122、ds-n123、ds-n124、ds-n125、ds-n126、ds-n127、ds-n128、ds-n129、ds-n130、ds-n131、ds-n132、ds-n133、ds-n134、ds-n135、ds-n136、ds-n137、ds-n138、ds-n139、ds-n140、ds-n141、ds-n142、ds-n143、ds-n144、ds-n145、ds-n146、ds-n147、ds-n148、ds-n149、ds-n150、ds-n151、ds-n152、ds-n153、ds-n154、ds-n155、ds-n156、ds-n157、ds-n158、ds-n159、ds-n160、ds-n161、ds-n162、ds-n163、ds-n164、ds-n165、ds-n166、ds-n167、ds-n168、ds-n169、ds-n170、ds-n171、ds-n172、ds-n173、ds-n174、ds-n175、ds-n176、ds-n177、ds-n178、ds-n179、ds-n180、ds-n181、ds-n182、ds-n183、ds-n184、ds-n185、ds-n186、ds-n187、ds-n188、ds-n189、ds-n190、ds-n191、ds-n192、ds-n193、ds-n194、ds-n195、ds-n196、ds-n197、ds-n198、ds-n201、ds-n202、ds-n203、ds-n204。In some embodiments, the RNA inhibitor comprises a duplex selected from the group consisting of: ds-n1, ds-n2, ds-n3, ds-n4, ds-n5, ds-n6, ds-n7, ds-n8, ds-n9, ds-n10, ds-n11, ds-n12, ds-n13, ds-n14, ds-n15, ds-n16, ds-n17, ds-n18, ds-n19, ds-n20, ds-n21, ds-n22, ds-n23, ds-n24, ds-n25, ds-n26, ds-n27, ds-n28, ds-n29, ds-n30, ds-n31, ds-n32, ds-n33, ds-n34, ds-n35, ds-n36, ds-n37, ds-n3 8. ds-n39, ds-n40, ds-n41, ds-n42, ds-n43, ds-n44, ds-n45, ds-n46, ds-n47, ds-n48, ds-n49, ds-n50, ds-n51, ds-n 52. ds-n53, ds-n54, ds-n55, ds-n56, ds-n57, ds-n58, ds-n59, ds-n60, ds-n61, ds-n62, ds-n63, ds-n64, ds-n65, ds -n66, ds-n67, ds-n68, ds-n69, ds-n70, ds-n71, ds-n72, ds-n73, ds-n74, ds-n75, ds-n76, ds-n77, ds-n78, ds-n79, ds-n80, ds-n81, ds-n82, ds-n83, ds-n84, ds-n85, ds-n86, ds-n87, ds-n88, ds-n89, ds-n90, ds-n91, ds-n92, ds-n9 3. ds-n94, ds-n95, ds-n96, ds-n97, ds-n98, ds-n99, ds-n100, ds-n101, ds-n102, ds-n103, ds-n104, ds-n105, ds-n1 06. ds-n107, ds-n108, ds-n109, ds-n110, ds-n111, ds-n112, ds-n113, ds-n114, ds-n115, ds-n116, ds-n117, ds-n1 18. ds-n119, ds-n120, ds-n121, ds-n122, ds-n123, ds-n124, ds-n125, ds-n126, ds-n127, ds-n128, ds-n129, ds-n1 30. ds-n131, ds-n132, ds-n133, ds-n134, ds-n135, ds-n136, ds-n137, ds-n138, ds-n139, ds-n140, ds-n141, ds-n1 42. ds-n143, ds-n144, ds-n145, ds-n146, ds-n147, ds-n148, ds-n149, ds-n150, ds-n151, ds-n152, ds-n153, ds-n15 4. ds-n155, ds-n156, ds-n157, ds-n158, ds-n159, ds-n160, ds-n161, ds-n162, ds-n163, ds-n164, ds-n165, ds-n16 6. ds-n167, ds-n168, ds-n169, ds-n170, ds-n171, ds-n172, ds-n173, ds-n174, ds-n175, ds-n176, ds-n177, ds-n178 , ds-n179, ds-n180, ds-n181, ds-n182, ds-n183, ds-n184, ds-n185, ds-n186, ds-n187, ds-n188, ds-n189, ds-n190 , ds-n191, ds-n192, ds-n193, ds-n194, ds-n195, ds-n196, ds-n197, ds-n198, ds-n201, ds-n202, ds-n203, ds-n204.
在一些实施方式中,RNA抑制剂,其包含选自如下所示的双链体:ds-n17、ds-n23、ds-n31、ds-n39、ds-n45、ds-n58、ds-n60、ds-n64、ds-n67、ds-n68、ds-n73、ds-n74、ds-n76、ds-n77、ds-n80、ds-n81、ds-n83、ds-n84、ds-n86、ds-n88、ds-n89、ds-n98、ds-n99、ds-n103、ds-n104、ds-n112、ds-n113、ds-n115、ds-n153、ds-n154、ds-n156、ds-n157、ds-n163、ds-n164、ds-n165、ds-n188、ds-n190、ds-n191、ds-n192、ds-n193、ds-n194、ds-n195、ds-n196、ds-n197、ds-n198。In some embodiments, the RNA inhibitor comprises a duplex selected from the group consisting of ds-n17, ds-n23, ds-n31, ds-n39, ds-n45, ds-n58, ds-n60, ds-n64, ds-n67, ds-n68, ds-n73, ds-n74, ds-n76, ds-n77, ds-n80, ds-n81, ds-n83, ds-n84, ds-n86, ds-n88, ds-n89, ds-n98 , ds-n99, ds-n103, ds-n104, ds-n112, ds-n113, ds-n115, ds-n153, ds-n154, ds-n156, ds-n157, ds-n163, ds-n 164, ds-n165, ds-n188, ds-n190, ds-n191, ds-n192, ds-n193, ds-n194, ds-n195, ds-n196, ds-n197, ds-n198.
在一些实施方式中,NA抑制剂,其包含选自如下所示的双链体:ds-n17、ds-n23、ds-n31、ds-n39、ds-n45、ds-n58、ds-n60、ds-n64、ds-n67、ds-n68、ds-n73、ds-n74、ds-n76、ds-n77、ds-n80、ds-n81、ds-n83、ds-n84、ds-n86、ds-n88、ds-n89、ds-n98、ds-n99、ds-n103、ds-n104、ds-n112、ds-n113、ds-n115、ds-n153、ds-n154、ds-n156、ds-n157、ds-n163、ds-n164、ds-n165、ds-n188。In some embodiments, the NA inhibitor comprises a duplex selected from the group consisting of ds-n17, ds-n23, ds-n31, ds-n39, ds-n45, ds-n58, ds-n60, ds-n64, ds-n67, ds-n68, ds-n73, ds-n74, ds-n76, ds-n77, ds-n80, ds-n81, ds-n83 , ds-n84, ds-n86, ds-n88, ds-n89, ds-n98, ds-n99, ds-n103, ds-n104, ds-n112, ds-n11 3. ds-n115, ds-n153, ds-n154, ds-n156, ds-n157, ds-n163, ds-n164, ds-n165, ds-n188.
在一些实施方式中,所述的RNA抑制剂,其包含选自如下所示的双链体:ds-n23、ds-n58、ds-n67、ds-n86、ds-n89、ds-n98、ds-n99、ds-n103、ds-n190、ds-n198、ds-n113。In some embodiments, the RNA inhibitor comprises a duplex selected from the group consisting of: ds-n23, ds-n58, ds-n67, ds-n86, ds-n89, ds-n98, ds-n99, ds-n103, ds-n190, ds-n198, and ds-n113.
在一些实施方式中,所述的RNA抑制剂,其特征在于,所述反义链在3’末端进一步包括区域B1,所述正义链在5’末端进一步包括区域A1,其中区域A1为0-6个核苷酸,区域B1为0-6个核苷酸。In some embodiments, the RNA inhibitor is characterized in that the antisense strand further includes region B1 at the 3' end, and the sense strand further includes region A1 at the 5' end, wherein region A1 is 0-6 nucleotides and region B1 is 0-6 nucleotides.
在一些实施方式中,所述的RNA抑制剂,其特征在于,所述区域B1为0,1,2,3,4,5或6个核苷酸;优选的所述区域B1为0或2个核苷酸。In some embodiments, the RNA inhibitor is characterized in that the region B1 is 0, 1, 2, 3, 4, 5 or 6 nucleotides; preferably, the region B1 is 0 or 2 nucleotides.
在一些实施方式中,所述的RNA抑制剂,其特征在于,所述区域A1为0,1,2,3,4,5或6个核苷酸;优选的所述区域A1为0或2个核苷酸。In some embodiments, the RNA inhibitor is characterized in that the region A1 is 0, 1, 2, 3, 4, 5 or 6 nucleotides; preferably, the region A1 is 0 or 2 nucleotides.
在一些实施方式中,所述的抑制RNA抑制剂,其特征在于,所述反义链在5’末端进一步包括区域X2,所述正义链或正义核酸在3’末端进一步包括区域X1,区域X1和区域X2互补配对。In some embodiments, the inhibitory RNA inhibitor is characterized in that the antisense strand further includes region X2 at the 5' end, and the sense strand or sense nucleic acid further includes region X1 at the 3' end, and region X1 and region X2 are complementary.
在一些实施方式中,所述的RNA抑制剂,其中X1为A、U、修饰的A或修饰的U,X2为U、A、修饰的U或修饰的A。In some embodiments, the RNA inhibitor, wherein X1 is A, U, modified A or modified U, and X2 is U, A, modified U or modified A.
在一些实施方式中,的RNA抑制剂,其特征在于,反义链在5’末端按照3’至5’方向依次包含X2、Y、Z和N,其中X2和Y分别独立为A、U、修饰的A或修饰的U,所述Z为G或修饰的G,所述N包含至少一个核苷酸。In some embodiments, the RNA inhibitor is characterized in that the antisense strand comprises X2, Y, Z and N in sequence from 3' to 5' direction at the 5' end, wherein X2 and Y are independently A, U, modified A or modified U, respectively, the Z is G or modified G, and the N contains at least one nucleotide.
在一些实施方式中,所述的RNA抑制剂,其中X2、Y、Z按照3’至5’方向依次为AAG、AUG、UUG或UAG,或经过部分或全部修饰的上述序列。In some embodiments, in the RNA inhibitor, X2, Y, and Z are AAG, AUG, UUG, or UAG, or partially or completely modified sequences thereof, from 3' to 5' direction.
在一些实施方式中,所述的RNA抑制剂,其中X2、Y、Z按照3’至5’方向依次为AAG、AUG、UUG或UAG,或经过部分或全部修饰的上述序列。In some embodiments, in the RNA inhibitor, X2, Y, and Z are AAG, AUG, UUG, or UAG, or partially or completely modified sequences thereof, from 3' to 5' direction.
在一些实施方式中,所述的RNA抑制剂,其中N为C或修饰的C。In some embodiments, the RNA inhibitor, wherein N is C or modified C.
在一些实施方式中,所述的RNA抑制剂,其中X2、Y、Z和N按照3’至5’方向依次为AAGC和UAGC,或经过部分或全部修饰的上述序列。In some embodiments, in the RNA inhibitor, X2, Y, Z and N are AAGC and UAGC in sequence from 3' to 5', or the above sequences that have been partially or completely modified.
在一些实施方式中,所述的RNA抑制剂,其中所述反义链包含如SEQ ID NO:401-413任意一项所述的序列中连续的至少15个核苷酸。In some embodiments, the RNA inhibitor, wherein the antisense strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:401-413.
在一些实施方式中,所述的RNA抑制剂,其选自ds-n190-1、ds-n191-1、ds-n192-1、ds-n193-1、ds-n194-1、ds-n195-1、ds-n196-1、ds-n197-1、ds-n198-1、ds-n201-1、ds-n202-1、ds-n203-1、ds-n204-1。In some embodiments, the RNA inhibitor is selected from ds-n190-1, ds-n191-1, ds-n192-1, ds-n193-1, ds-n194-1, ds-n195-1, ds-n196-1, ds-n197-1, ds-n198-1, ds-n201-1, ds-n202-1, ds-n203-1, and ds-n204-1.
在一些实施方式中,所述的RNA抑制剂,其中所述RNA抑制剂中至少一个核苷酸为修饰的核苷酸。In some embodiments, the RNA inhibitor, wherein at least one nucleotide in the RNA inhibitor is a modified nucleotide.
在一些实施方式中,所述的RNA抑制剂,其中所述RNA抑制剂中至少70%、80%、90%、95%的核苷酸为修饰的核苷酸;优选的所有核苷酸为修饰的核苷酸。In some embodiments, the RNA inhibitor, wherein at least 70%, 80%, 90%, 95% of the nucleotides in the RNA inhibitor are modified nucleotides; preferably all nucleotides are modified nucleotides.
在一些实施方式中,所述的RNA抑制剂,其中所述修饰包括以下一种或多种的组合:2’-OMe(2’-O-甲基)修饰、2’-F(2’-脱氧-2’-氟)修饰、2’-O-MOE(2’-O-甲氧基乙基)修饰、2’-脱氧(2’-d)修饰、5’-吗啉(5’-Mo)修饰、解锁核酸(UNA)修饰、乙二醇核酸(GNA)修饰、锁核酸(LNA)修饰、三环DNA(tcDNA)修饰、(S)-约束乙基双环核酸((S)-cEt-BNA)修饰、硫代磷酸酯(PS)修饰、二硫代磷酸酯(PS2)修饰、甲基膦酸酯(MP)修饰、甲氧基丙甲基膦酸酯(MOP)修饰、肽核酸(PNA)修饰、5’-(E)-乙烯基磷酸酯(VP)修饰(VP)、N6-甲基腺苷(m6A)修饰、5-甲基胞苷(m5C)修饰、3-甲基尿嘧啶核苷(m3U)修饰、5-甲基脲苷(m5U)修饰、假脲苷修饰、2-硫脲苷(s2U)修饰、丙炔尿嘧啶核苷(5-pU)修饰、将核苷酸的5’端或者3’端键合连接反置的无碱基核苷酸(invAB)修饰、将核苷酸替换为反置的无碱基核苷酸(invAb)修饰、将核苷酸替换为2,4-二氟甲苯基核糖核苷酸(rF)修饰或将核苷酸替换为(S)-甘油核酸修饰,优选的修饰为2'-OMe修饰、2'-F修饰、2'-脱氧修饰、VP修饰、5'-MP修饰、PS修饰、PS2修饰、MP修饰、MOP修饰、M06修饰、invAb修饰或invAB修饰。In some embodiments, the RNA inhibitor, wherein the modification comprises a combination of one or more of the following: 2'-OMe (2'-O-methyl) modification, 2'-F (2'-deoxy-2'-fluoro) modification, 2'-O-MOE (2'-O-methoxyethyl) modification, 2'-deoxy (2'-d) modification, 5'-morpholine (5'-Mo) modification, unlocked nucleic acid (UNA) modification, glycol nucleic acid (GNA) modification, locked nucleic acid (LNA) modification, tricyclic DNA (tcDNA) modification, (S)-constrained ethyl bicyclic nucleic acid ((S)-cEt-BNA) modification, phosphorothioate (PS) modification, phosphorodithioate (PS2) modification, methylphosphonate (MP) modification, methoxypropylmethylphosphonate (MOP) modification, peptide nucleic acid (PNA) modification, 5'-(E)-vinyl phosphate (VP) modification (V P), N6-methyladenosine (m6A) modification, 5-methylcytidine (m5C) modification, 3-methyluridine (m3U) modification, 5-methylureidine (m5U) modification, pseudouridine modification, 2-thioureidine (s2U) modification, propyne uridine (5-pU) modification, inverted abasic nucleotide (invAB) modification by bonding the 5' or 3' end of the nucleotide, replacing the nucleotide with an inverted abasic nucleotide (invAb) modification, replacing the nucleotide with a 2,4-difluoromethylphenyl ribonucleotide (rF) modification or replacing the nucleotide with a (S)-glycerol nucleic acid modification, preferably a 2'-OMe modification, a 2'-F modification, a 2'-deoxy modification, a VP modification, a 5'-MP modification, a PS modification, a PS2 modification, an MP modification, a MOP modification, an M06 modification, an invAb modification or an invAB modification.
在一些实施方式中,所述的RNA抑制剂,其中反义链的3'或5'-端包括磷酸盐或磷酸盐模拟物,或者正义链的3'或5'-端包括磷酸盐或磷酸盐模拟物。In some embodiments, in the RNA inhibitor, the 3' or 5'-end of the antisense strand comprises a phosphate or a phosphate mimetic, or the 3' or 5'-end of the sense strand comprises a phosphate or a phosphate mimetic.
在一些实施方式中,述的RNA抑制剂,其中磷酸盐模拟物包括5’-(E)-乙烯基膦酸酯、5’-甲基膦酸酯、(S)-5’-C-甲基类似物和5’-硫代磷酸酯(5’-PS)。In some embodiments, the RNA inhibitor described above, wherein the phosphate mimetic comprises 5'-(E)-vinylphosphonate, 5'-methylphosphonate, (S)-5'-C-methyl analogs and 5'-phosphorothioate (5'-PS).
在一些实施方式中,所述的RNA抑制剂,其中反义链的5'-端包括(M06)修饰: In some embodiments, the RNA inhibitor, wherein the 5'-end of the antisense strand comprises (M06) modification:
在一些实施方式中,所述的RNA抑制剂,其中反义链的3'或5'-端存在invAB修饰,或者正义链的3'或5'-端存在invAB修饰。In some embodiments, the RNA inhibitor has an invAB modification at the 3' or 5' end of the antisense strand, or an invAB modification at the 3' or 5' end of the sense strand.
在一些实施方式中,所述的RNA抑制剂,其中反置的无碱基核苷酸或M06通过硫代磷酸酯与反义链的3'或5'-端或者正义链的3'或5'-端相连。In some embodiments, in the RNA inhibitor, the inverted abasic nucleotide or M06 is linked to the 3' or 5' end of the antisense strand or the 3' or 5' end of the sense strand via a phosphorothioate.
在一些实施方式中,所述的RNA抑制剂,具有以下修饰组合In some embodiments, the RNA inhibitor has the following modified combinations:
a)正义链包含长度为16-21nt的第一序列,所述第一序列包括以下修饰:从5’端开始计数,第9、10、11位的核苷酸存在2’-F修饰;a) the positive strand comprises a first sequence of 16-21 nt in length, wherein the first sequence comprises the following modifications: counting from the 5' end, nucleotides at positions 9, 10, and 11 have 2'-F modifications;
b)反义链包含长度为16-21nt的第二序列,所述第二序列包括以下修饰:从5’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和3位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接;并且从5’端开始计数,第2、3、4、12、14、16位的核苷酸存在2’-F修饰。b) the antisense strand comprises a second sequence of 16-21 nt in length, wherein the second sequence includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, a phosphorothioate linkage between the 2nd and 3rd nucleotides, and a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides.
在一些实施方式中,所述的RNA抑制剂,具有以下修饰组合In some embodiments, the RNA inhibitor has the following modified combinations:
a)正义链包含长度为16-21nt的第一序列,所述第一序列包括以下修饰:从5’端开始计数,第9、10、11位的核苷酸存在2’-F修饰,其余为2’-Ome修饰;a) the positive strand comprises a first sequence of 16-21 nt in length, wherein the first sequence comprises the following modifications: counting from the 5' end, the 9th, 10th and 11th nucleotides are 2'-F modified, and the rest are 2'-Ome modified;
b)反义链包含长度为16-21nt的第二序列,所述第二序列包括以下修饰:从5’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和3位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接;并且从5’端开始计数,第2、3、4、12、14、16位的核苷酸存在2’-F修饰,其余为2’-Ome修饰。b) The antisense strand comprises a second sequence of 16-21 nt in length, wherein the second sequence includes the following modifications: counting from the 5' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, there is a phosphorothioate connection between the 2nd and 3rd nucleotides, and there is a phosphorothioate connection between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides, and the rest are 2'-Ome modifications.
在一些实施方式中,所述的RNA抑制剂,具有以下修饰组合In some embodiments, the RNA inhibitor has the following modified combinations:
a)正义链包含长度为16-21nt的第一序列,所述第一序列包括以下修饰:从5’端开始计数,第9、10、11位的核苷酸存在2’-F修饰;a) the positive strand comprises a first sequence of 16-21 nt in length, wherein the first sequence comprises the following modifications: counting from the 5' end, nucleotides at positions 9, 10, and 11 have 2'-F modifications;
b)反义链包含长度为16-21nt的第二序列,所述第二序列包括以下修饰:从5’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和3位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接;并且从5’端开始计数,第2、3、4、12、14、16位的核苷酸存在2’-F修饰。b) the antisense strand comprises a second sequence of 16-21 nt in length, wherein the second sequence includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, a phosphorothioate linkage between the 2nd and 3rd nucleotides, and a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides.
在一些实施方式中,所述的RNA抑制剂,其中第一序列长度优为16nt、17nt、18nt、19nt、20nt、21nt,优选21nt。In some embodiments, the RNA inhibitor, wherein the first sequence length is preferably 16nt, 17nt, 18nt, 19nt, 20nt, 21nt, preferably 21nt.
在一些实施方式中,所述的RNA抑制剂,其中第二序列长度优为16nt、17nt、18nt、19nt、20nt、21nt,优选21nt。In some embodiments, the RNA inhibitor, wherein the second sequence length is preferably 16nt, 17nt, 18nt, 19nt, 20nt, 21nt, preferably 21nt.
在一些实施方式中,所述的RNA抑制剂,具有以下修饰组合In some embodiments, the RNA inhibitor has the following modified combinations:
a)正义链长度为21nt,包括以下修饰:从5’端开始计数,第9、10、11位的核苷酸存在2’-F修饰;a) The forward strand is 21 nt long and includes the following modifications: Counting from the 5' end, nucleotides at positions 9, 10, and 11 have 2'-F modifications;
b)反义链长度为21nt,包括以下修饰:从5’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和3位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接;并且从5’端开始计数,第2、3、4、12、14、16位的核苷酸存在2’-F修饰。b) The antisense strand is 21 nt in length and includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, a phosphorothioate linkage between the 2nd and 3rd nucleotides, and a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides.
在一些实施方式中,所述的RNA抑制剂,具有以下修饰组合In some embodiments, the RNA inhibitor has the following modified combinations:
a)正义链长度为21nt,包括以下修饰:从5’端开始计数,第9、10、11位的核苷酸存在2’-F修饰,其余为2’-Ome修饰;a) The forward strand is 21 nt long and includes the following modifications: counting from the 5' end, the 9th, 10th, and 11th nucleotides have 2'-F modifications, and the rest are 2'-Ome modifications;
b)反义链长度为21nt,包括以下修饰:从5’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和3位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接;并且从5’端开始计数,第2、3、4、12、14、16位的核苷酸存在2’-F修饰,其余为2’-Ome修饰。b) The antisense strand is 21 nt in length and includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, a phosphorothioate linkage between the 2nd and 3rd nucleotides, and a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides, and the rest are 2'-Ome modifications.
在一些实施方式中,所述的RNA抑制剂,其中所述反义链包含如SEQ ID NO:624-812任意一项所述的序列中连续的至少15个核苷酸。In some embodiments, the RNA inhibitor, wherein the antisense strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:624-812.
在一些实施方式中,所述的RNA抑制剂,其中所述正义链包含如SEQ ID NO:414-602任意一项所述的序列中连续的至少15个核苷酸。In some embodiments, the RNA inhibitor, wherein the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:414-602.
在一些实施方式中,所述的RNA抑制剂,其选自:In some embodiments, the RNA inhibitor is selected from:
ds-m1、ds-m2、ds-m3、ds-m4、ds-m5、ds-m6、ds-m7、ds-m8、ds-m9、ds-m10、ds-m11、ds-m12、ds-m13、ds-m14、ds-m15、ds-m16、ds-m17、ds-m18、ds-m19、ds-m20、ds-m21、ds-m22、ds-m23、ds-m24、ds-m25、ds-m26、ds-m27、ds-m28、ds-m29、ds-m30、ds-m31、ds-m32、ds-m33、ds-m34、ds-m35、ds-m36、ds-m37、ds-m38、ds-m39、ds-m40、ds-m41、ds-m42、ds-m43、ds-m44、ds-m45、ds-m46、ds-m47、ds-m48、ds-m49、ds-m50、ds-m51、ds-m52、ds-m53、ds-m54、ds-m55、ds-m56、ds-m57、ds-m58、ds-m59、ds-m60、ds-m61、ds-m62、ds-m63、ds-m64、ds-m65、ds-m66、ds-m67、ds-m68、ds-m69、ds-m70、ds-m71、ds-m72、ds-m73、ds-m74、ds-m75、ds-m76、ds-m77、ds-m78、ds-m79、ds-m80、ds-m81、ds-m82、ds-m83、ds-m84、ds-m85、ds-m86、ds-m87、ds-m88、ds-m89、ds-m90、ds-m91、ds-m92、ds-m93、ds-m94、ds-m95、ds-m96、ds-m97、ds-m98、ds-m99、ds-m100、ds-m101、ds-m102、ds-m103、ds-m104、ds-m105、ds-m106、ds-m107、ds-m108、ds-m109、ds-m110、ds-m111、ds-m112、ds-m113、ds-m114、ds-m115、ds-m116、ds-m117、ds-m118、ds-m119、ds-m120、ds-m121、ds-m122、ds-m123、ds-m124、ds-m125、ds-m126、ds-m127、ds-m128、ds-m129、ds-m130、ds-m131、ds-m132、ds-m133、ds-m134、ds-m135、ds-m136、ds-m137、ds-m138、ds-m139、ds-m140、ds-m141、ds-m142、ds-m143、ds-m144、ds-m145、ds-m146、ds-m147、ds-m148、ds-m149、ds-m150、ds-m151、ds-m152、ds-m153、ds-m154、ds-m155、ds-m156、ds-m157、ds-m158、ds-m159、ds-m160、ds-m161、ds-m162、ds-m163、ds-m164、ds-m165、ds-m166、ds-m167、ds-m168、ds-m169、ds-m170、ds-m171、ds-m172、ds-m173、ds-m174、ds-m175、ds-m176、ds-m177、ds-m178、ds-m179、ds-m180、ds-m181、ds-m182、ds-m183、ds-m184、ds-m185、ds-m186、ds-m187、ds-m188、ds-m189。ds-m1, ds-m2, ds-m3, ds-m4, ds-m5, ds-m6, ds-m7, ds-m8, ds-m9, ds-m10, ds-m11, ds-m12, ds-m13, ds-m1 4. ds-m15, ds-m16, ds-m17, ds-m18, ds-m19, ds-m20, ds-m21, ds-m22, ds-m23, ds-m24, ds-m25, ds-m26, ds -m27, ds-m28, ds-m29, ds-m30, ds-m31, ds-m32, ds-m33, ds-m34, ds-m35, ds-m36, ds-m37, ds-m38, ds-m39 , ds-m40, ds-m41, ds-m42, ds-m43, ds-m44, ds-m45, ds-m46, ds-m47, ds-m48, ds-m49, ds-m50, ds-m51, ds- m52, ds-m53, ds-m54, ds-m55, ds-m56, ds-m57, ds-m58, ds-m59, ds-m60, ds-m61, ds-m62, ds-m63, ds-m64 , ds-m65, ds-m66, ds-m67, ds-m68, ds-m69, ds-m70, ds-m71, ds-m72, ds-m73, ds-m74, ds-m75, ds-m76, ds- m77, ds-m78, ds-m79, ds-m80, ds-m81, ds-m82, ds-m83, ds-m84, ds-m85, ds-m86, ds-m87, ds-m88, ds-m89, ds-m90, ds-m91, ds-m92, ds-m93, ds-m94, ds-m95, ds-m96, ds-m97, ds-m98, ds-m99, ds-m100, ds-m101, ds -m102, ds-m103, ds-m104, ds-m105, ds-m106, ds-m107, ds-m108, ds-m109, ds-m110, ds-m111, ds-m112, d s-m113, ds-m114, ds-m115, ds-m116, ds-m117, ds-m118, ds-m119, ds-m120, ds-m121, ds-m122, ds-m123, d s-m124, ds-m125, ds-m126, ds-m127, ds-m128, ds-m129, ds-m130, ds-m131, ds-m132, ds-m133, ds-m134, d s-m135, ds-m136, ds-m137, ds-m138, ds-m139, ds-m140, ds-m141, ds-m142, ds-m143, ds-m144, ds-m145, d s-m146, ds-m147, ds-m148, ds-m149, ds-m150, ds-m151, ds-m152, ds-m153, ds-m154, ds-m155, ds-m156, ds-m157, ds-m158, ds-m159, ds-m160, ds-m161, ds-m162, ds-m163, ds-m164, ds-m165, ds-m166, ds-m167, ds-m168, ds-m169, ds-m170, ds-m171, ds-m172, ds-m173, ds-m174, ds-m175, ds-m176, ds-m177, ds-m178, ds-m179, ds-m180, ds-m181, ds-m182, ds-m183, ds-m184, ds-m185, ds-m186, ds-m187, ds-m188, ds-m189.
在一些实施方式中,所述的RNA抑制剂,其中In some embodiments, the RNA inhibitor, wherein
a)正义链包含长度为18-21nt的第三序列,所述第三序列包括以下修饰:从5’端开始计数,正义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接,正义链第9、10、11、18位的核苷酸存在2’-F修饰,其余为2’-OMe修饰;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接;a) the sense strand comprises a third sequence of 18-21 nt in length, wherein the third sequence comprises the following modifications: counting from the 5' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the sense strand, there is a phosphorothioate connection between the 2nd and 3rd nucleotides, there is a 2'-F modification at the 9th, 10th, 11th, and 18th nucleotides of the sense strand, and the rest are 2'-OMe modified; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides;
b)反义链包含长度为19-26nt的第四序列,所述第四序列包括以下修饰:从5’端开始计数,反义链第1、2、5、9、17、19位的核苷酸存在2’-F修饰,其余为2’-OMe修饰,第4和第5核苷酸之间存在硫代磷酸酯连接;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接。b) the antisense strand comprises a fourth sequence with a length of 19-26 nt, wherein the fourth sequence includes the following modifications: counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense strand are 2'-F modified, the rest are 2'-OMe modified, and there is a phosphorothioate connection between the 4th and 5th nucleotides; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides.
在一些实施方式中,所述的RNA抑制剂,其中第三序列长度优为18nt、19nt、20nt、21nt、22nt、21nt,优选21nt。In some embodiments, in the RNA inhibitor, the length of the third sequence is preferably 18nt, 19nt, 20nt, 21nt, 22nt, 21nt, preferably 21nt.
在一些实施方式中,所述的RNA抑制剂,其中第四序列长度优为19nt、20nt、21nt、22nt、23nt、24nt,25nt、26nt,优选26nt。In some embodiments, in the RNA inhibitor, the length of the fourth sequence is preferably 19nt, 20nt, 21nt, 22nt, 23nt, 24nt, 25nt, 26nt, preferably 26nt.
在一些实施方式中,任意一项所述的RNA抑制剂,其中In some embodiments, any one of the RNA inhibitors, wherein
a)正义链长度为21nt,从5’端开始计数,正义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接,正义链第9、10、11、18位的核苷酸存在2’-F修饰,其余为2’-OMe修饰;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接;a) The length of the sense strand is 21 nt. Counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides of the sense strand, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides. The 9th, 10th, 11th, and 18th nucleotides of the sense strand are 2'-F modified, and the rest are 2'-OMe modified; counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides;
b)反义链长度为26nt,从5’端开始计数,反义链第1、2、5、9、17、19位的核苷酸存在2’-F修饰,其余为2’-OMe修饰,第4和第5核苷酸之间存在硫代磷酸酯连接;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接。b) The antisense chain is 26 nt in length. Counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense chain are modified with 2'-F, and the rest are modified with 2'-OMe. There is a phosphorothioate linkage between the 4th and 5th nucleotides. Counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
在一些实施方式中,所述的RNA抑制剂,其中所述反义链包含如SEQ ID NO:813-827任意一项所述的序列中连续的至少15个核苷酸。In some embodiments, the RNA inhibitor, wherein the antisense strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:813-827.
在一些实施方式中,所述的RNA抑制剂,其中所述正义链包含如SEQ ID NO:603-617任意一项所述的序列中连续的至少15个核苷酸。In some embodiments, the RNA inhibitor, wherein the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:603-617.
在一些实施方式中,所述的RNA抑制剂,其包含选自如下所示的双链体:In some embodiments, the RNA inhibitor comprises a duplex selected from the following:
ds-m190、ds-m191、ds-m192、ds-m193、ds-m194、ds-m195、ds-m196、ds-m197、ds-m198、ds-m199、ds-m200、ds-m201、ds-m202、ds-m203和ds-m204。ds-m190, ds-m191, ds-m192, ds-m193, ds-m194, ds-m195, ds-m196, ds-m 197, ds-m198, ds-m199, ds-m200, ds-m201, ds-m202, ds-m203 and ds-m204.
在一些实施方式中,所述的RNA抑制剂,还包含递送系统,其中所述递送系统缀合于正义链和/或反义链,所述递送系统能够使所述RNA抑制剂到达靶组织的目标RNA产生基因沉默效应。In some embodiments, the RNA inhibitor further comprises a delivery system, wherein the delivery system is conjugated to the sense strand and/or antisense strand, and the delivery system enables the RNA inhibitor to reach the target RNA in the target tissue to produce a gene silencing effect.
在一些实施方式中,靶组织是眼部组织,关节组织,中枢神经组织,外周神经组织,肿瘤,肝组织,肾组织,肌肉组织,脂肪组织。In some embodiments, the target tissue is eye tissue, joint tissue, central nervous tissue, peripheral nervous tissue, tumor, liver tissue, kidney tissue, muscle tissue, adipose tissue.
在一些实施方式中,眼组织为视神经、小梁网、近管组织、神经节、巩膜外静脉、施累姆氏管或眼部外周组织,优选的,所述的关节组织包含软骨组织,关节结缔组织,骨组织;优选的,所述的中枢神经组织包含脊髓组织,脑组织;优选的,所述的外周神经组织包含关节内神经组织,肌肉神经组织;优选的,脂肪组织包含皮下脂肪组织,内脏脂肪组织。In some embodiments, the eye tissue is the optic nerve, trabecular meshwork, proximal canal tissue, ganglion, episcleral vein, Schlemm's canal or peripheral eye tissue. Preferably, the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue; preferably, the central nervous tissue comprises spinal cord tissue and brain tissue; preferably, the peripheral nervous tissue comprises intra-articular nerve tissue and muscle nerve tissue; preferably, the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
在一些实施方式中,眼组织为视网膜神经节、内皮细胞、眼外周肌肉或眼外周脂肪。In some embodiments, the ocular tissue is retinal ganglion, endothelial cells, peripheral ocular muscle, or peripheral ocular fat.
在一些实施方式中,递送系统分别独立地与双链核糖核酸的一个或多个内部位置缀合。In some embodiments, the delivery systems are each independently conjugated to one or more internal locations of the double-stranded RNA.
在一些实施方式中,所述内部位置在核碱基、糖环、甲基膦酸酯健、硫代磷酸二酯键或磷酸二酯键上。In some embodiments, the internal position is on a nucleobase, a sugar ring, a methylphosphonate bond, a phosphorothioate diester bond, or a phosphodiester bond.
在一些实施方式中,其中,所述递送系统是亲脂性结构,所述亲脂性结构包括亲脂性基团和连接子,所述亲脂性基团通过连接子连接到所述双链核糖核酸上。In some embodiments, the delivery system is a lipophilic structure, the lipophilic structure comprises a lipophilic group and a linker, and the lipophilic group is connected to the double-stranded ribonucleic acid through the linker.
在一些实施方式中,其中,所述亲脂性结构选自脂肪族、脂环族和多脂环族化合物。In some embodiments, the lipophilic structure is selected from aliphatic, alicyclic and polyaliphatic compounds.
在一些实施方式中,其中,所述亲脂性结构含有饱和或不饱和的C16或C22。In some embodiments, the lipophilic structure contains saturated or unsaturated C16 or C22.
在一些实施方式中,其中,所述连接子选自单键、醚、硫醚、尿素、碳酸酯、胺、酰胺、马来酰亚胺-硫醚、二硫化物、磷酸二酯、磺酰胺键、点击反应的产物和氨基甲酸酯。In some embodiments, the linker is selected from a single bond, an ether, a thioether, a urea, a carbonate, an amine, an amide, a maleimide-thioether, a disulfide, a phosphodiester, a sulfonamide bond, a product of a click reaction, and a carbamate.
在一些实施方式中,所述递送系统为 In some embodiments, the delivery system is
在一些实施方式中,其中所述递送系统缀合于反义链或反义核酸片段的5’末端和/或3’末端。In some embodiments, the delivery system is conjugated to the 5' end and/or 3' end of the antisense strand or antisense nucleic acid fragment.
在一些实施方式中,其中所述递送系统缀合于正义链或正义核酸片段的5’末端和/或3’末端。In some embodiments, the delivery system is conjugated to the 5' end and/or 3' end of the sense strand or sense nucleic acid fragment.
在一些实施方式中,其中所述递送系统缀合于反义链或反义核酸片段的5’末端,且所述配体缀合于正义链或正义核酸片段的3’末端,所述两个配体相同或不同。In some embodiments, wherein the delivery system is conjugated to the 5' end of the antisense strand or antisense nucleic acid fragment, and the ligand is conjugated to the 3' end of the sense strand or sense nucleic acid fragment, the two ligands are the same or different.
在一些实施方式中,其中所述递送系统缀合于反义链或反义核酸片段的3’末端,且所述配体缀合于正义链或正义核酸片段的5’末端,所述两个配体相同或不同。In some embodiments, wherein the delivery system is conjugated to the 3' end of the antisense strand or antisense nucleic acid fragment, and the ligand is conjugated to the 5' end of the sense strand or sense nucleic acid fragment, the two ligands are the same or different.
在一些实施方式中,其中所述递送系统缀合于反义链或反义核酸片段的5’末端,且所述配体缀合于正义链或正义核酸片段的5’末端,所述两个配体相同或不同。In some embodiments, wherein the delivery system is conjugated to the 5' end of the antisense strand or antisense nucleic acid fragment, and the ligand is conjugated to the 5' end of the sense strand or sense nucleic acid fragment, the two ligands are the same or different.
在一些实施方式中,其中所述递送系统缀合于反义链或反义核酸片段的3’末端,且所述配体缀合于正义链或正义核酸片段的3’末端,所述两个配体相同或不同。In some embodiments, wherein the delivery system is conjugated to the 3' end of the antisense strand or antisense nucleic acid fragment, and the ligand is conjugated to the 3' end of the sense strand or sense nucleic acid fragment, the two ligands are the same or different.
在一些实施方式中,递送系统的数量为1、2、3、4、5或6个。In some embodiments, the number of delivery systems is 1, 2, 3, 4, 5, or 6.
在一些实施方式中,其中所述反义链包含如SEQ ID NO:822-827任意一项所述的序列中连续的至少15个核苷酸。In some embodiments, the antisense strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:822-827.
在一些实施方式中,其中所述正义链包含如SEQ ID NO:618-623任意一项所述的序列中连续的至少15个核苷酸。In some embodiments, the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:618-623.
在一些实施方式中,所述的RNA抑制剂其选自:Z1、Z2、Z3、Z4、Z5、Z6。In some embodiments, the RNA inhibitor is selected from: Z1, Z2, Z3, Z4, Z5, and Z6.
另一方面,本申请提供一种药物组合物,其包含所述的RNA抑制剂,和/或生理上可接受的赋形剂和/或载体和/或稀释剂。On the other hand, the present application provides a pharmaceutical composition comprising the RNA inhibitor, and/or a physiologically acceptable excipient and/or carrier and/or diluent.
在一些实施方式中,其特征在于所述药学上可接受的载体包括或选自水性载体、脂质体、高分子聚合物或多肽。In some embodiments, it is characterized in that the pharmaceutically acceptable carrier includes or is selected from aqueous carriers, liposomes, high molecular polymers or polypeptides.
另一方面,本申请提供一种靶向IGF-1R的RNA抑制剂及其药物组合物在制备治疗IGF-1R相关疾病或病理的药物中的用途;优选的,所述RNA抑制剂为siRNA;更有选的,所述siRNA向有需要的受试者的局部或者病灶区域组织施用。On the other hand, the present application provides an RNA inhibitor targeting IGF-1R and a pharmaceutical composition thereof for use in the preparation of a drug for treating IGF-1R related diseases or pathologies; preferably, the RNA inhibitor is siRNA; more preferably, the siRNA is administered to a local or lesion area tissue of a subject in need.
在一些实施方式中,其中所述IGF-1R相关的疾病或病理包括与IGF-1R水平升高相关的疾病或症状。In some embodiments, the IGF-1R-related disease or pathology comprises a disease or symptom associated with elevated IGF-1R levels.
在一些实施方式中,,其中所述IGF-1R相关的疾病或病理包括甲状腺眼病,骨性关节炎、神经性疼痛。In some embodiments, the IGF-1R-related disease or pathology comprises thyroid eye disease, osteoarthritis, and neuropathic pain.
在一些实施方式中,其中所述RNA抑制剂及其药物组合物为实施方式1-73任一项所述的RNA抑制剂或实施方式74-75任一项所述的药物组合物。In some embodiments, the RNA inhibitor and its pharmaceutical composition are the RNA inhibitor described in any one of embodiments 1-73 or the pharmaceutical composition described in any one of embodiments 74-75.
另一方面,本申请提供一种RNA抑制剂或所述的药物组合物在制备药物中的用途,所述药物用于预防或治疗疾病或病理或者降低疾病或症状的风险。On the other hand, the present application provides a use of an RNA inhibitor or the pharmaceutical composition in the preparation of a drug for preventing or treating a disease or pathology or reducing the risk of a disease or symptom.
另一方面,本申请提供一种预防或治疗IGF-1R相关疾病或症状的方法,包括向有此需要的受试者施用有效量的RNA抑制剂及其药物组合物。In another aspect, the present application provides a method for preventing or treating an IGF-1R-related disease or symptom, comprising administering an effective amount of an RNA inhibitor and a pharmaceutical composition thereof to a subject in need thereof.
在一些实施方式中,所述RNA抑制剂及其药物组合物为所述的RNA抑制剂或所述的药物组合物。In some embodiments, the RNA inhibitor and the pharmaceutical composition thereof are the RNA inhibitor or the pharmaceutical composition.
在一些实施方式中,其中所述RNA抑制剂、其药学上可接受的盐或所述药物组合物以眶内注射方式、关节内注射方式、鞘内注射方式、皮下方式、静脉内方式、口服、经直肠或腹膜内施加途径向受试者施用。In some embodiments, the RNA inhibitor, a pharmaceutically acceptable salt thereof, or the pharmaceutical composition is administered to the subject by intraorbital injection, intraarticular injection, intrathecal injection, subcutaneous administration, intravenous administration, oral administration, rectal administration, or intraperitoneal administration.
在一些实施方式中,所述的方法包括向有需要的受试者的局部或者病灶区域组织施用。In some embodiments, the method comprises administering to a local or focal area of tissue in a subject in need thereof.
在一些实施方式中,其中需要的受试者的局部或者病灶区域组织包括眼部组织,关节组织,中枢神经组织,外周神经组织,肿瘤,肝组织,肾组织,肌肉组织,或脂肪组织。In some embodiments, the local or focal area tissue of the subject in need thereof includes eye tissue, joint tissue, central nervous tissue, peripheral nervous tissue, tumor, liver tissue, kidney tissue, muscle tissue, or adipose tissue.
在一些实施方式中,其中,所述眼组织为视神经、小梁网、近管组织、神经节、巩膜外静脉、施累姆氏管或眼部外周组织,优选的,所述的关节组织包含软骨组织,关节结缔组织,骨组织;优选的,所述的中枢神经组织包含脊髓组织,脑组织;优选的,所述的外周神经组织包含关节内神经组织,肌肉神经组织;优选的,脂肪组织包含皮下脂肪组织,内脏脂肪组织。In some embodiments, the eye tissue is the optic nerve, trabecular meshwork, proximal canal tissue, ganglion, episcleral vein, Schlemm's canal or peripheral eye tissue. Preferably, the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue; preferably, the central nervous tissue comprises spinal cord tissue and brain tissue; preferably, the peripheral nervous tissue comprises intra-articular nervous tissue and muscle nervous tissue; preferably, the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
在一些实施方式中,其中,所述眼组织为视网膜神经节、内皮细胞、眼外周肌肉或眼外周脂肪。In some embodiments, the eye tissue is retinal ganglion, endothelial cells, peripheral ocular muscle or peripheral ocular fat.
在一些实施方式中,其中所述IGF-1R相关的疾病或病理包括与IGF-1R水平升高相关的疾病或症状。In some embodiments, the IGF-1R-related disease or pathology comprises a disease or symptom associated with elevated IGF-1R levels.
在一些实施方式中,其中所述IGF-1R相关的疾病或病理包括甲状腺眼病,骨性关节炎、神经性疼痛。In some embodiments, the IGF-1R-related disease or pathology comprises thyroid eye disease, osteoarthritis, and neuropathic pain.
本领域技术人员能够从下文的详细描述中容易地洞察到本申请的其它方面和优势。下文的详细描述中仅显示和描述了本申请的示例性实施方式。如本领域技术人员将认识到的,本申请的内容使得本领域技术人员能够对所公开的具体实施方式进行改动而不脱离本申请所涉及发明的精神和范围。Those skilled in the art can easily discern other aspects and advantages of the present application from the detailed description below. In the detailed description below, only exemplary embodiments of the present application are shown and described. As will be appreciated by those skilled in the art, the content of the present application enables those skilled in the art to modify the disclosed specific embodiments without departing from the spirit and scope of the invention to which the present application relates.
本申请所涉及的发明的具体特征如所附权利要求书所显示。通过参考下文中详细描述的示例性实施方式和附图能够更好地理解本申请所涉及发明的特点和优势。对附图简要说明书如下:The specific features of the invention involved in this application are shown in the attached claims. The features and advantages of the invention involved in this application can be better understood by referring to the exemplary embodiments and drawings described in detail below. A brief description of the drawings is as follows:
图1显示的是本申请所述RNA抑制剂食蟹猴眶内给药PD结果。FIG1 shows the PD results of intraorbital administration of the RNA inhibitor described in the present application to cynomolgus monkeys.
图2显示的是本申请所述RNA抑制剂正义链或者反义链3’末端或5’末端的结构。FIG2 shows the structure of the 3′ end or 5′ end of the sense strand or antisense strand of the RNA inhibitor described in the present application.
以下由特定的具体实施例说明本申请发明的实施方式,熟悉此技术的人士可由本说明书所公开的内容容易地了解本申请发明的其他优点及效果。The following is an explanation of the implementation of the present invention by means of specific embodiments. Those skilled in the art can easily understand other advantages and effects of the present invention from the contents disclosed in this specification.
术语定义Definition of terms
在本申请中,“任选”、“任选的”或“任选地”含义等同,是指其后描述的事件或状况可以发生或不发生,并且该描述包括事件或状况发生的情况和不发生的情况。例如,“任选地取代的烷基”或“烷基任选被取代”包括“烷基”(烷基上的H不被非H取代基取代/置换)和“取代烷基”(烷基上的H被非H取代基取代/置换)。如本文所用,本领域技术人员将理解的是,对于包含一个或多个取代基的任何基团,这些基团不打算引入空间上不切实际、合成上不可行和/或本身不稳定的任何取代或取代模式。例如,“任选地被修饰”包括不被修饰和被修饰,进一步地,“核苷酸任选被修饰”包括核苷酸不被修饰和核苷酸被修饰。In the present application, "optional", "optional" or "optionally" are equivalent in meaning, meaning that the event or situation described thereafter may or may not occur, and the description includes situations where the event or situation occurs and situations where it does not occur. For example, "optionally substituted alkyl" or "alkyl is optionally substituted" includes "alkyl" (H on the alkyl is not substituted/replaced by a non-H substituent) and "substituted alkyl" (H on the alkyl is substituted/replaced by a non-H substituent). As used herein, it will be understood by those skilled in the art that for any group containing one or more substituents, these groups are not intended to introduce any substitution or substitution pattern that is sterically impractical, synthetically infeasible and/or inherently unstable. For example, "optionally modified" includes not being modified and being modified, and further, "nucleotides are optionally modified" includes nucleotides that are not modified and nucleotides that are modified.
在本申请中,当任何变量(例如取代基R,例如核酸被修饰)在化合物的组成或结构中出现一次以上时,其在每一种情况下的定义都是独立的。例如,如果一个基团被0-2个R所取代,则所述基团可以任选地至多被两个R所取代,并且每种情况下的R都有独立的选项。再例如,当多个核苷酸被修饰时,每个核苷酸分别独立地任选被修饰,每个核苷酸被修饰的类型和数量可以相同也可以不同。In this application, when any variable (e.g., a substituent R, such as a nucleic acid being modified) appears more than once in the composition or structure of a compound, its definition in each case is independent. For example, if a group is substituted by 0-2 Rs, the group may be optionally substituted by up to two Rs, and each case has independent options. For another example, when multiple nucleotides are modified, each nucleotide is optionally modified independently, and the type and amount of modification of each nucleotide may be the same or different.
在本申请中,术语“RNA抑制剂”、“iRNA”、“siRNA”、“RNAi剂”、“iRNA剂”和“RNA干扰剂”可交换使用,通常指包含如本申请术语所定义的RNA的药剂,其可通过在细胞内形成RNA诱导沉默复合物(RISC)介导RNA转录物的靶向切割。所述RNA抑制剂经由称为RNA干扰(RNAi)的过程指导mRNA的序列特异性降解。本申请所述的RNA抑制剂可以调控或者抑制IGF-1R基因在细胞中的基因表达,在一些实施方式中,所述细胞可以是哺乳动物受试者的细胞。在一些实施方式中,RNA抑制剂可以调控或者抑制IGF-1R基因的mRNA序列(NM_000875.5Homo sapiens insulin-like growth factor 1receptor),所述mRNA序列包括如SEQ ID NO:828所示的序列。In this application, the terms "RNA inhibitor", "iRNA", "siRNA", "RNAi agent", "iRNA agent" and "RNA interfering agent" are used interchangeably and generally refer to an agent comprising RNA as defined in the terms of this application, which can mediate targeted cleavage of RNA transcripts by forming an RNA-induced silencing complex (RISC) in cells. The RNA inhibitor directs the sequence-specific degradation of mRNA via a process called RNA interference (RNAi). The RNA inhibitor described in the present application can regulate or inhibit gene expression of the IGF-1R gene in cells, and in some embodiments, the cells can be cells of mammalian subjects. In some embodiments, the RNA inhibitor can regulate or inhibit the mRNA sequence of the IGF-1R gene (NM_000875.5 Homo sapiens insulin-like growth factor 1 receptor), and the mRNA sequence includes the sequence shown in SEQ ID NO:828.
在某些实施方式中,本申请所使用的“RNA抑制剂”是单链siRNA(ssRNAi),所述RNA抑制剂可以被引入到细胞或生物体中来抑制靶mRNA的。所述单链RNA抑制剂可以结合RISC内切核酸酶Argonaute 2,其然后切割靶mRNA。单链RNA抑制剂一般为15至30个核苷酸且经化学修饰。单链siRNA的设计和测试说明于美国专利号8,101,348及Lima等人(2012)Cell 150:883-894中,其各自的完整内容以引用的方式并入本文中。本申请所述的任何反义核苷酸序列均可用作本申请所述的或通过Lima等人(2012)Cell 150:883-894中说明的方法进行化学修饰的单链siRNA。In certain embodiments, the "RNA inhibitor" used in the present application is a single-stranded siRNA (ssRNAi), which can be introduced into a cell or organism to inhibit the target mRNA. The single-stranded RNA inhibitor can bind to the RISC endonuclease Argonaute 2, which then cleaves the target mRNA. Single-stranded RNA inhibitors are generally 15 to 30 nucleotides and are chemically modified. The design and testing of single-stranded siRNAs are described in U.S. Patent No. 8,101,348 and Lima et al. (2012) Cell 150: 883-894, the entire contents of each of which are incorporated herein by reference. Any antisense nucleotide sequence described in this application can be used as a single-stranded siRNA described in this application or chemically modified by the method described in Lima et al. (2012) Cell 150: 883-894.
在某些实施方式中,本申请所使用的“RNA抑制剂”是shRNA。本文所用的术语“shRNA”(即,短发夹RNA)指人工单链干扰RNA分子,其在茎环或发夹结构中包含“siRNA双链体”的正义链和/或反义链。此发夹结构的茎的长度通常在19至29个核苷酸的范围内,环的长度通常在4至15个核苷酸的范围内(见例如Siolas,D.等(2004)Nat.Biotechnol.23,227-231)。通常,在RNA聚合酶III启动子(例如U6启动子)的控制下在DNA基因表达载体内编码shRNA分子。In certain embodiments, the "RNA inhibitor" used in the present application is shRNA. The term "shRNA" (i.e., short hairpin RNA) used herein refers to an artificial single-stranded interfering RNA molecule that contains the sense strand and/or antisense strand of the "siRNA duplex" in a stem-loop or hairpin structure. The length of the stem of this hairpin structure is generally in the range of 19 to 29 nucleotides, and the length of the loop is generally in the range of 4 to 15 nucleotides (see, e.g., Siolas, D. et al. (2004) Nat. Biotechnol. 23, 227-231). Typically, shRNA molecules are encoded in a DNA gene expression vector under the control of an RNA polymerase III promoter (e.g., U6 promoter).
在某些实施方式中,本申请所使用的“RNA抑制剂”是miRNA。术语“miRNA”或“微RNA”根据其在本领域中的通常意义在本文中使用,是指在多种真核生物包括哺乳动物中基因表达并参与基于RNA的基因调控的小的、非蛋白编码RNA分子。成熟的完全加工的miRNA是约15至约30个核苷酸长度。一组代表性的已知的内源性miRNA种类描述于公共可获得的miRBase序列数据库,描述于Griffith-Jones等人,Nucleic Acids Research,2004,32:D109-D111和Griffith-Jones等人,Nucleic Acids Research,2006,34:D 140-D144,以及在Wellcome Trust Sanger Institute网站的万维网上可访问。在miRBase序列数据库上可公开获得的成熟的完全加工的miRNA通过引用并入本文。一组代表性的miRNA也包括在本文下面的表1中。每个成熟miRNA与一种或多种信使RNA(mRNA)分子部分互补,所述信使RNA是该miRNA的目标,从而调节与目标相关的基因表达。In certain embodiments, the "RNA inhibitor" used in the present application is a miRNA. The term "miRNA" or "microRNA" is used herein according to its common meaning in the art, and refers to a small, non-protein coding RNA molecule that is expressed in a variety of eukaryotic organisms, including mammals, and participates in RNA-based gene regulation. Mature fully processed miRNAs are about 15 to about 30 nucleotides in length. A representative set of known endogenous miRNA species are described in the publicly available miRBase sequence database, described in Griffith-Jones et al., Nucleic Acids Research, 2004, 32: D109-D111 and Griffith-Jones et al., Nucleic Acids Research, 2006, 34: D 140-D144, and accessible on the World Wide Web at the Wellcome Trust Sanger Institute website. The mature fully processed miRNAs publicly available on the miRBase sequence database are incorporated herein by reference. A representative set of miRNAs is also included in Table 1 below this article. Each mature miRNA is partially complementary to one or more messenger RNA (mRNA) molecules that are targets of the miRNA, thereby regulating the expression of target-associated genes.
在某些实施方式中,本申请所使用的“RNA抑制剂”是ASO。本文所用的术语“ASO”(即,反义核酸)指这样的核酸分子,其具有“siRNA双链体”的正义链和/或反义链,其通过RNA-RNA或RNA-DNA或RNA-PNA(蛋白质核酸;Egholm等人,1993Nature 365,566)相互作用与靶RNA结合,并且通过空间相互作用或通过RNA酶H介导的靶识别改变靶RNA的活性(关于综述,参见Stein和Cheng,1993Science 261,1004和Woolf等人,美国专利号5,849,902)。一般地,反义分子沿着反义分子的单个邻接序列与靶序列互补。然而,在某些实施方案中,反义分子可以与底物结合,从而使得底物分子形成环,和/或反义分子可以结合,从而使得反义分子形成环。因此,反义分子可以与2个(或甚至更多)非邻接的底物序列互补,或反义分子的2个(或甚至更多)非邻接的序列部分可以与靶序列或2者互补。关于目前的反义策略的综述,参见Schmajuk等人,1999,J.Biol.Chem.,274,21783-21789,Delihas等人,1997,Nature,15,751-753,Stein等人,1997,Antisense N.A.Drug Dev.,7,151,Crooke,2000,Methods Enzymol.,313,3-45;Crooke,1998,Biotech.Genet.Eng.Rev.,15,121-157,Crooke,1997,Ad.Pharmacol.,40,1-49。此外,由2’-MOE和如本领域已知的其他修饰进行修饰的反义DNA或反义可以通过DNA-RNA相互作用用于靶向RNA,从而激活RNA酶H,所述RNA酶H消化双链体中的靶RNA。反义寡核苷酸可以包含一个或多个RNA酶H激活区,其能够激活靶RNA的RNA酶H切割。反义DNA可以经由使用单链DNA基因表达载体或其等价物进行化学合成或基因表达。本发明的反义分子可以如本领域一般已知的或如本文描述的进行化学修饰。In certain embodiments, the "RNA inhibitor" used in the present application is an ASO. The term "ASO" (i.e., antisense nucleic acid) used herein refers to a nucleic acid molecule having a sense strand and/or antisense strand of an "siRNA duplex" that binds to a target RNA through RNA-RNA or RNA-DNA or RNA-PNA (protein nucleic acid; Egholm et al., 1993 Nature 365, 566) interactions, and alters the activity of the target RNA through spatial interactions or through RNase H-mediated target recognition (for review, see Stein and Cheng, 1993 Science 261, 1004 and Woolf et al., U.S. Patent No. 5,849,902). Generally, antisense molecules are complementary to target sequences along a single adjacent sequence of the antisense molecule. However, in certain embodiments, the antisense molecule can bind to a substrate so that the substrate molecule forms a ring, and/or the antisense molecule can bind so that the antisense molecule forms a ring. Thus, an antisense molecule can be complementary to two (or even more) non-adjacent substrate sequences, or two (or even more) non-adjacent sequence portions of an antisense molecule can be complementary to a target sequence or both. For a review of current antisense strategies, see Schmajuk et al., 1999, J. Biol. Chem., 274, 21783-21789, Delihas et al., 1997, Nature, 15, 751-753, Stein et al., 1997, Antisense N. A. Drug Dev., 7, 151, Crooke, 2000, Methods Enzymol., 313, 3-45; Crooke, 1998, Biotech. Genet. Eng. Rev., 15, 121-157, Crooke, 1997, Ad. Pharmacol., 40, 1-49. In addition, antisense DNA or antisense modified by 2'-MOE and other modifications as known in the art can be used for targeting RNA through DNA-RNA interactions, thereby activating RNase H, which digests the target RNA in the duplex. Antisense oligonucleotides can include one or more RNase H activation regions that can activate RNase H cleavage of the target RNA. Antisense DNA can be chemically synthesized or genetically expressed using single-stranded DNA gene expression vectors or their equivalents. Antisense molecules of the present invention can be chemically modified as generally known in the art or as described herein.
在某些实施方式中,本申请所使用的“RNA抑制剂”是双链RNA,且本文中称为“siRNA双链体”、“双链RNA抑制剂”、“双链siRNA分子”、“双链siRNA”或“dsRNA”。术语“siRNA双链体”指核糖核酸分子的复合物,其具有包含两个反向平行且部分互补的核酸链的双链体结构,其具有相对于靶RNA(即IGF-1R基因)的“正义”和“反义”取向的两条链。在一些实施方式中,siRNA双链体经由称为RNA干扰(RNAi)的过程指导mRNA的序列(如IGF-1R基因的mRNA序列)特异性降解。In certain embodiments, the "RNA inhibitor" used in the present application is a double-stranded RNA, and is referred to herein as a "siRNA duplex", "double-stranded RNA inhibitor", "double-stranded siRNA molecule", "double-stranded siRNA" or "dsRNA". The term "siRNA duplex" refers to a complex of ribonucleic acid molecules having a duplex structure comprising two antiparallel and partially complementary nucleic acid chains, which have two chains in "sense" and "antisense" orientations relative to the target RNA (i.e., the IGF-1R gene). In some embodiments, the siRNA duplex directs the sequence-specific degradation of mRNA (such as the mRNA sequence of the IGF-1R gene) via a process called RNA interference (RNAi).
总体上,RNA抑制剂的每一链的大部分的核苷酸是核糖核苷酸。在没有说明的情况下,其为核糖核苷酸。但是如在此详述的,两条链的每一者或两者还可以包括一个或多个非核糖核苷酸,例如一种脱氧核糖核苷酸和/或一种经修饰的核苷酸。此外,“RNA抑制剂”可以包括化学修饰的核糖核苷酸。这些修饰可以包括在此披露的或在本领域中已知的所有类型的修饰。如在RNA抑制剂分子中所使用的任何此类修饰被“RNA抑制剂”所囊括用于本说明书以及权利要求书的目的。In general, most of the nucleotides of each chain of RNA inhibitors are ribonucleotides. In the absence of description, they are ribonucleotides. But as described in detail herein, each or both of the two chains can also include one or more non-ribonucleotides, such as a deoxyribonucleotide and/or a modified nucleotide. In addition, "RNA inhibitors" can include chemically modified ribonucleotides. These modifications can include all types of modifications disclosed herein or known in the art. Any such modification as used in RNA inhibitor molecules is encompassed by "RNA inhibitors" for the purpose of this specification and claims.
双链体结构可为容许所需的靶RNA通过RISC途径的特异性降解的任何长度,且可在约19至36碱基对的长度范围内,例如,约19-30碱基对的长度,例如,约19、20、21、22、23、24、25、26、27、28、29、30、31、32、33、34、35或36碱基对的长度。上述范围与长度中间的范围与长度也包括为本申请的部分。在某些实施方式中,本申请的RNA抑制剂为各链包含15-23个核苷酸的dsRNA,其与靶RNA序列(例如,IGF-1R基因)相互作用以指导靶RNA的切割。在某些实施方式中,本申请的RNA抑制剂为24-30个核苷酸的dsRNA,其与靶RNA序列(例如,IGF-1R基因的mRNA序列)相互作用以指导靶RNA的切割。The duplex structure can be any length that allows for specific degradation of the desired target RNA by the RISC pathway, and can be within the length range of about 19 to 36 base pairs, for example, about 19-30 base pairs in length, for example, about 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35 or 36 base pairs in length. Ranges and lengths intermediate to the above ranges and lengths are also included as part of the present application. In certain embodiments, the RNA inhibitor of the present application is a dsRNA having 15-23 nucleotides in each chain, which interacts with a target RNA sequence (e.g., an IGF-1R gene) to guide the cutting of the target RNA. In certain embodiments, the RNA inhibitor of the present application is a dsRNA of 24-30 nucleotides, which interacts with a target RNA sequence (e.g., an mRNA sequence of an IGF-1R gene) to guide the cutting of the target RNA.
在本申请中,术语“反义链”通常是指RNA抑制剂(例如双链体siRNA)上的、可以与靶核酸(例如,目标基因组序列的mRNA序列,包括mRNA前体和mRNA分子,举例来说IGF-1R基因的mRNA序列)实质上互补的链。在本申请中使用的术语“互补性区域”通常指反义链上与本申请使用的(IGF-1R基因的mRNA序列)实质上互补的区域。当互补性区域与不完全互补时,错配可以在分子的内部或末端区域。通常,最被容许的错配在末端区域,例如,在5’末端和/或3’末端的5、4、3或2个核苷酸内。In the present application, the term "antisense strand" generally refers to a strand on an RNA inhibitor (e.g., a duplex siRNA) that is substantially complementary to a target nucleic acid (e.g., an mRNA sequence of a target genomic sequence, including mRNA precursors and mRNA molecules, for example, an mRNA sequence of an IGF-1R gene). The term "complementarity region" used in the present application generally refers to a region on the antisense strand that is substantially complementary to the (mRNA sequence of an IGF-1R gene) used in the present application. When the complementary region is not completely complementary, the mismatch may be in the interior or terminal regions of the molecule. Generally, the most tolerated mismatch is in the terminal region, for example, within 5, 4, 3, or 2 nucleotides of the 5' end and/or 3' end.
在本申请中,术语“错配”是指非腺嘌呤(A)与胸腺嘧啶(T)配对、非腺嘌呤(A)与尿嘧啶(U)配对、非鸟嘌呤(G)与胞嘧啶(C)配对、相对核苷酸的碱基之间不形成氢键以及相对核苷酸之间缺少碱基等情形。In the present application, the term "mismatch" refers to situations such as pairing of non-adenine (A) with thymine (T), pairing of non-adenine (A) with uracil (U), pairing of non-guanine (G) with cytosine (C), no hydrogen bond formation between bases of relative nucleotides, and lack of bases between relative nucleotides.
在本申请中,术语“反义核酸片段”是指所述反义链上连续的片段,所述片段长度可以包含15-35个核苷酸。举例来说,所述反义核酸片段可以是反义链上连续15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30、31、32、33或34个核苷酸长度的片段。所述反义核酸片段与编码IGF-1R的mRNA中任一长度的核苷酸连续片段具有互补性,在一些实施方式中,所述反义核酸片段上至少3个连续核苷酸片段与编码IGF-1R的mRNA中对应长度的连续核苷酸片段互补。In the present application, the term "antisense nucleic acid fragment" refers to a continuous fragment on the antisense strand, and the fragment length may include 15-35 nucleotides. For example, the antisense nucleic acid fragment may be a fragment of 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or 34 nucleotides in length on the antisense strand. The antisense nucleic acid fragment is complementary to a continuous nucleotide fragment of any length in the mRNA encoding IGF-1R. In some embodiments, at least 3 continuous nucleotide fragments on the antisense nucleic acid fragment are complementary to continuous nucleotide fragments of corresponding length in the mRNA encoding IGF-1R.
在本申请中,术语“正义链”通常是指RNA抑制剂的这样一条链,所述链包括与作为在此定义的术语反义链的区域基本互补的区域。“正义”链有时被称为“有义”链,“过客”链或“反引导”链。借助它们的序列,反义链靶向所希望的mRNA,同时正义链靶向不同靶标。因此,如果反义链被掺入RISC中,则正确的靶标被靶向。正义链的掺入可以导致脱靶效应。这些脱靶效应可以通过在正义链上使用修饰或使用5’端帽加以限制。In the present application, the term "sense strand" generally refers to a strand of an RNA inhibitor, comprising a region substantially complementary to the region of the term antisense strand as defined herein. A "sense" strand is sometimes referred to as a "sense" strand, a "passenger" strand or an "anti-guide" strand. With their sequence, the antisense strand targets the desired mRNA, while the sense strand targets different targets. Therefore, if the antisense strand is incorporated into RISC, the correct target is targeted. The incorporation of the sense strand can result in off-target effects. These off-target effects can be limited by using modifications or using 5' end caps on the sense strand.
在本申请中,术语“正义核酸片段”是指所述正义链上连续的片段,所述片段长度可以包含15-35个核苷酸。举例来说,所述正义核酸片段可以是正义链上连续15、16、17、18、19、20、21、22、23、24、25、26、27、28、29、30、31、32、33或34个核苷酸长度的片段。In the present application, the term "sense nucleic acid fragment" refers to a continuous fragment on the sense strand, and the fragment length may include 15-35 nucleotides. For example, the sense nucleic acid fragment may be a fragment of 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33 or 34 nucleotides in length on the sense strand.
在本申请中,术语“互补”是指包含RNA抑制剂反义链或反义核酸片段的多核苷酸在一定条件下与包含RNA抑制剂正义链或正义核酸片段或IGF-1R mRNA的多核苷酸杂交(形成碱基对氢键)并形成双链体或双螺旋结构的能力。互补序列包括沃森-克里克碱基对(Watson-Crick base pairs)或非沃森-克里克碱基对,并且包括天然或经修饰的核苷酸或核苷酸模拟物,只要以上关于它们的杂交能力而言的需求得以实现。“互补”不必需在每个核苷上的碱基均具有互补性,在一些情况下可以发生一些错配。In the present application, the term "complementary" refers to the ability of a polynucleotide comprising an RNA inhibitor antisense strand or antisense nucleic acid fragment to hybridize (form base pair hydrogen bonds) and form a duplex or double helix structure with a polynucleotide comprising an RNA inhibitor sense strand or sense nucleic acid fragment or IGF-1R mRNA under certain conditions. Complementary sequences include Watson-Crick base pairs or non-Watson-Crick base pairs, and include natural or modified nucleotides or nucleotide mimetics, as long as the above requirements regarding their hybridization ability are met. "Complementary" does not necessarily require that the bases on each nucleoside have complementarity, and some mismatches may occur in some cases.
在本申请中,术语“完全互补”通常意指RNA抑制剂反义链或反义核酸片段的连续序列中的全部(100%)碱基将与RNA抑制剂正义链或正义核酸片段或IGF-1R mRNA的连续序列中的相同数目的碱基杂交。连续序列可以包含上述序列的全部或一部分。如本申请所用,“部分互补”通常意指在杂交的核碱基序列对中,RNA抑制剂反义链或反义核酸片段的连续序列中至少约70%的碱基将与RNA抑制剂正义链或正义核酸片段或IGF-1R mRNA的连续序列中相同数目的碱基杂交。如本申请所用的术语“互补”、“完全互补”和“基本上互补”可以就在RNA抑制剂的正义链或正义核酸片段与反义链或反义核酸片段之间或者在RNA抑制剂的反义链或反义核酸片段与IGF-1R mRNA的序列之间的碱基匹配而言使用。序列同一性或互补性不依赖于修饰。例如为了测定同一性或互补性的目的,a和Af与U(或T)互补并且与A同一。In the present application, the term "fully complementary" generally means that all (100%) bases in the continuous sequence of the antisense strand or antisense nucleic acid fragment of the RNA inhibitor will hybridize with the same number of bases in the continuous sequence of the sense strand or sense nucleic acid fragment of the RNA inhibitor or IGF-1R mRNA. The continuous sequence may contain all or part of the above sequence. As used in the present application, "partially complementary" generally means that in the hybridized nucleobase sequence pair, at least about 70% of the bases in the continuous sequence of the antisense strand or sense nucleic acid fragment of the RNA inhibitor will hybridize with the same number of bases in the continuous sequence of the sense strand or sense nucleic acid fragment of the RNA inhibitor or IGF-1R mRNA. The terms "complementary", "fully complementary" and "substantially complementary" as used in the present application can be used in terms of base matching between the sense strand or sense nucleic acid fragment of the RNA inhibitor and the antisense strand or antisense nucleic acid fragment or between the antisense strand or antisense nucleic acid fragment of the RNA inhibitor and the sequence of the IGF-1R mRNA. Sequence identity or complementarity is independent of modification. For example, a and Af are complementary to U (or T) and identical to A for the purposes of determining identity or complementarity.
如本文所用,术语“核苷酸”指由五碳糖(核糖或脱氧核糖)、磷酸基团和碱基(天然或非天然碱基)组成,并且旨在包括未修饰(即天然的)核苷酸和修饰的核苷酸。在一些实施例中,核苷酸是未修饰的核糖核苷酸。在一些实施例中,核糖核苷酸是3'-核糖核苷酸。在一些实施例中,核糖核苷酸是5'-核糖核苷酸。在一些实施例中,修饰的或未修饰的核苷酸可以任选地进一步被修饰。As used herein, the term "nucleotide" refers to a pentose (ribose or deoxyribose), a phosphate group and a base (natural or non-natural base), and is intended to include unmodified (i.e., natural) nucleotides and modified nucleotides. In some embodiments, the nucleotide is an unmodified ribonucleotide. In some embodiments, the ribonucleotide is a 3'-ribonucleotide. In some embodiments, the ribonucleotide is a 5'-ribonucleotide. In some embodiments, modified or unmodified nucleotides may be optionally further modified.
天然核苷酸由天然碱基、天然核糖和磷酸组成。本文所使用的天然核苷酸是指腺嘌呤核糖核苷酸、腺嘌呤脱氧核糖核苷酸、鸟嘌呤核糖核苷酸、鸟嘌呤脱氧核糖核苷酸、胞嘧啶核糖核苷酸、胞嘧啶脱氧核糖核苷酸、尿嘧啶核糖核苷酸、胸腺嘧啶核糖核苷酸或胸腺嘧啶脱氧核糖核苷酸。术语“核糖核苷酸”是指在核苷酸的糖部分的2'位置上具有羟基的核苷酸。“脱氧核糖核苷”是指在该核苷酸的糖部分的2′位置上具有氢的核苷酸。Natural nucleotides are composed of natural bases, natural ribose and phosphate. As used herein, natural nucleotides refer to adenine ribonucleotides, adenine deoxyribonucleotides, guanine ribonucleotides, guanine deoxyribonucleotides, cytosine ribonucleotides, cytosine deoxyribonucleotides, uracil ribonucleotides, thymine ribonucleotides or thymine deoxyribonucleotides. The term "ribonucleotide" refers to a nucleotide having a hydroxyl group at the 2' position of the sugar portion of the nucleotide. "Deoxyribonucleoside" refers to a nucleotide having a hydrogen at the 2' position of the sugar portion of the nucleotide.
RNA的天然碱基包括A(腺嘌呤)、G(鸟嘌呤)、C(胞嘧啶)、U(尿嘧啶)和T(胸腺嘧啶)。如本文所用,在单体(如核苷酸A、U、C、G和T等)前标记“d”表示单体被2’-脱氧修饰。如本文所用,在单体(如核苷酸A、U、C、G和T等)后标记“f”,表示单体被2’-脱氧-2’-氟修饰(2'-F修饰)。如本文所用,在单体(如核苷酸A、U、C、G和T等)前标记“GNA-”,表示单体被乙二醇核酸修饰(GNA修饰)。如本文所用,Tgn为GNA-T代号,表意等同。如本文所用,小写字母(a、u、c、g、t等)表示其相应大写字母(A、U、C、G和T等)代表的核苷酸被2’-O-甲基(2’-OMe)修饰。The natural bases of RNA include A (adenine), G (guanine), C (cytosine), U (uracil) and T (thymine). As used herein, the marking "d" before the monomer (such as nucleotides A, U, C, G and T, etc.) indicates that the monomer is modified by 2'-deoxy. As used herein, the marking "f" after the monomer (such as nucleotides A, U, C, G and T, etc.) indicates that the monomer is modified by 2'-deoxy-2'-fluorine (2'-F modification). As used herein, the marking "GNA-" before the monomer (such as nucleotides A, U, C, G and T, etc.) indicates that the monomer is modified by ethylene glycol nucleic acid (GNA modification). As used herein, Tgn is the code for GNA-T, which is equivalent to the meaning. As used herein, lowercase letters (a, u, c, g, t, etc.) indicate that the nucleotides represented by their corresponding uppercase letters (A, U, C, G and T, etc.) are modified by 2'-O-methyl (2'-OMe).
在本发明中,如无特殊说明,“G”、“C”、“A”、“T”和“U”分别指鸟嘌呤核糖核苷酸、胞嘧啶核糖核苷酸、腺嘌呤核糖核苷酸、胸腺嘧啶核糖核苷酸和尿嘧啶核糖核苷酸,结构如下: In the present invention, unless otherwise specified, "G", "C", "A", "T" and "U" refer to guanine ribonucleotide, cytosine ribonucleotide, adenine ribonucleotide, thymine ribonucleotide and uracil ribonucleotide, respectively, and the structure is as follows:
在本发明中,在核苷酸(A、U、C、G和T等)前标记“d”表示核苷酸被2’-脱氧修饰。示例性的,2’-脱氧修饰的核苷酸结构如下: In the present invention, the mark "d" before a nucleotide (A, U, C, G, T, etc.) indicates that the nucleotide is 2'-deoxy modified. Exemplarily, the structure of a 2'-deoxy modified nucleotide is as follows:
在本发明中,在核苷酸(A、U、C、G和T等)后标记“f”,表示核苷酸被2’-脱氧-2’-氟修饰(2'-F修饰)。示例性的,2'-F修饰的核苷酸结构如下: In the present invention, the mark "f" after the nucleotide (A, U, C, G and T, etc.) indicates that the nucleotide is 2'-deoxy-2'-fluoro modified (2'-F modified). Exemplarily, the structure of the 2'-F modified nucleotide is as follows:
在本发明中,在核苷酸(A、U、C、G和T等)前标记“GNA-”,表示核苷酸被乙二醇核酸修饰(GNA修饰)。在本发明中,Tgn为GNA-T代号,表意等同。示例性的,被GNA修饰的核苷酸结构如下: In the present invention, "GNA-" is marked before a nucleotide (A, U, C, G, T, etc.), indicating that the nucleotide is modified by ethylene glycol nucleic acid (GNA modification). In the present invention, Tgn is the code for GNA-T, which is equivalent. Exemplarily, the structure of the nucleotide modified by GNA is as follows:
在本发明中,小写字母(a、u、c、g、t等)表示其相应大写字母(A、U、C、G和T等)代表的核苷酸被2’-O-甲基(2’-OMe)修饰。示例性的,2’-OMe修饰的核苷酸结构如下: In the present invention, lowercase letters (a, u, c, g, t, etc.) indicate that the nucleotides represented by their corresponding uppercase letters (A, U, C, G, and T, etc.) are modified by 2'-O-methyl (2'-OMe). Exemplarily, the structure of the nucleotide modified by 2'-OMe is as follows:
在本发明中,invAB修饰是指在核苷酸的5’端或者3’端键合连接反置的无碱基核苷酸。In the present invention, the invAB modification refers to the bonding of an inverted abasic nucleotide to the 5' end or 3' end of the nucleotide.
示例性的,被invAB修饰后的结构: For example, The structure modified by invAB:
在本发明中,invAb修饰是指将核苷酸替换为反置的无碱基核苷酸(invAb)修饰。示例性的,被invAb修饰后的结构: In the present invention, invAb modification refers to the modification of replacing a nucleotide with an inverted abasic nucleotide (invAb). Exemplary, The structure after modification by invAb:
在本发明中,VP修饰是指核苷酸5’位被5’-(E)-乙烯基磷酸酯修饰,示例性的,U、u和dU被修饰后的结构如下: In the present invention, VP modification refers to modification of the 5' position of the nucleotide by 5'-(E)-vinyl phosphate. For example, the structures of U, u and dU after modification are as follows:
在本发明中,在单体(如核苷酸A、U、C、G和T等)之间标记“*”表示这两个单体之间通过硫代磷酸酯键(即硫代磷酸二酯键)连接,即被硫代磷酸酯(PS)修饰。In the present invention, the mark "*" between monomers (such as nucleotides A, U, C, G and T, etc.) indicates that the two monomers are connected by a phosphorothioate bond (i.e., phosphorothioate diester bond), i.e., modified by phosphorothioate (PS).
在本发明中,在单体(如核苷酸A、U、C、G和T等)之间无“*”标记表示两个核苷酸之间通过磷酸酯键(即磷酸二酯键)连接。In the present invention, the absence of a "*" mark between monomers (such as nucleotides A, U, C, G and T, etc.) indicates that the two nucleotides are connected by a phosphate bond (i.e., a phosphodiester bond).
示例性的,如“5’-AdUgCf*dT-3’”表示:序列从5’端起,1位为腺嘌呤核糖核苷酸,2位为尿嘧啶脱氧核糖核苷酸,3位为2’-甲氧基修饰的鸟嘌呤核糖核苷酸,4位为2’-氟修饰的胞嘧啶核糖核苷酸,5位为与4位之间通过硫代磷酸酯键连接的胸腺嘧啶脱氧核糖核苷酸。For example, “5’-AdUgCf*dT-3’” means that starting from the 5’ end of the sequence, position 1 is an adenine ribonucleotide, position 2 is a uracil deoxyribonucleotide, position 3 is a 2’-methoxy-modified guanine ribonucleotide, position 4 is a 2’-fluorine-modified cytosine ribonucleotide, and position 5 is a thymine deoxyribonucleotide connected to position 4 via a phosphorothioate bond.
如本文所用,“任选”、“任选的”或“任选地”含义等同,是指其后描述的事件或状况可以发生或不发生,并且该描述包括事件或状况发生的情况和不发生的情况。例如,“任选地取代的烷基”或“烷基任选被取代”包括“烷基”(烷基上的H不被非H取代基取代/置换)和“取代烷基”(烷基上的H被非H取代基取代/置换)。如本文所用,本领域技术人员将理解的是,对于包含一个或多个取代基的任何基团,这些基团不打算引入空间上不切实际、合成上不可行和/或本身不稳定的任何取代或取代模式。例如,“任选地被修饰”包括不被修饰和被修饰,进一步地,“核苷酸任选被修饰”包括核苷酸不被修饰和核苷酸被修饰。As used herein, "optional", "optional" or "optionally" are equivalent in meaning, meaning that the event or situation described thereafter may or may not occur, and the description includes both situations where the event or situation occurs and situations where it does not occur. For example, "optionally substituted alkyl" or "alkyl is optionally substituted" includes "alkyl" (H on the alkyl is not substituted/replaced by a non-H substituent) and "substituted alkyl" (H on the alkyl is substituted/replaced by a non-H substituent). As used herein, it will be understood by those skilled in the art that for any group containing one or more substituents, these groups are not intended to introduce any substitution or substitution pattern that is sterically impractical, synthetically infeasible and/or inherently unstable. For example, "optionally modified" includes not being modified and being modified, and further, "nucleotides are optionally modified" includes nucleotides that are not modified and nucleotides that are modified.
如本文所用,当任何变量(例如取代基R,例如核酸被修饰)在化合物的组成或结构中出现一次以上时,其在每一种情况下的定义都是独立的。例如,如果一个基团被0-2个R所取代,则所述基团可以任选地至多被两个R所取代,并且每种情况下的R都有独立的选项。再例如,当多个核苷酸被修饰时,每个核苷酸分别独立地任选被修饰,每个核苷酸被修饰的类型和数量可以相同也可以不同。As used herein, when any variable (e.g., a substituent R, such as a nucleic acid that is modified) appears more than once in the composition or structure of a compound, its definition in each case is independent. For example, if a group is substituted with 0-2 Rs, the group can be optionally substituted with up to two Rs, and each case of R has independent options. For another example, when multiple nucleotides are modified, each nucleotide is optionally modified independently, and the type and amount of modification of each nucleotide can be the same or different.
如本文所用,除非另有说明,“包含”、“包括”、“至少为、“具有”、“有”、“至少有”、“含有”或等同物为开放式表述,意味着除所列出的要素、组分或步骤外,还可涵盖其他未指明的要素、组分或步骤。As used herein, unless otherwise specified, "comprising," "including," "at least," "having," "having," "at least," "containing," or the like are open-ended expressions and mean that in addition to the listed elements, components, or steps, other unspecified elements, components, or steps may also be included.
如本文所用,“互补”或“反向互补”可互相替代使用,是指两个核苷酸(例如,在两个相对核酸链上或在单个核酸链的相对区上)之间的结构关系,其允许两个核苷酸彼此形成碱基对(例如,与相对核酸的嘧啶核苷酸互补的一个核酸的嘌呤核苷酸可通过彼此形成氢键一起成碱基对)。在本申请的一些方案中,互补核苷酸可以Watson-Crick方式或以允许形成稳定双链体的任何其他方式成碱基对。在本申请的一些方案中,两个核酸链可具有多个形成互补的双链区。在本申请的一些方案中,在DNA中,腺嘌呤(A)始终与胸腺嘧啶(T),在RNA中,腺嘌呤(A)与尿嘧啶(U)相配对;鸟嘌呤(G)始终与胞嘧啶(C)相配对。在本申请的一些方案中,互补核苷酸还可以包括或完全形成自非Watson(沃森)-Crick(克里克)碱基对和/或从非天然的以及经修饰的核苷酸形成的碱基对,此类非Watson(沃森)-Crick(克里克)碱基对包括但不局限于G:U摇摆碱基配对或Hoogstein(胡格斯腾)碱基配对。在本申请的一些方案中,包含次黄嘌呤(Hypoxanthine)作为其碱基的核苷酸可以与包含腺嘌呤、胞嘧啶或尿嘧啶的核苷酸碱基配对。在本申请的一些方案中,含有尿嘧啶、鸟嘌呤或腺嘌呤的核苷酸可能在本申请的核苷酸序列中被含有例如肌苷(inosine,在申请中,大写字母“I”根据其上下文含义可表示次黄嘌呤碱基、肌苷或含肌苷的核苷酸)的核苷酸替换(该替换简称I修饰)。在本申请的一些方案中,寡核苷酸中任何地方的腺嘌呤和胞嘧啶可以分别被鸟嘌呤和尿嘧啶替换,以与靶mRNA形成G-U摇摆碱基配对。As used herein, "complementary" or "reverse complementary" can be used interchangeably and refer to a structural relationship between two nucleotides (e.g., on two opposing nucleic acid chains or on opposing regions of a single nucleic acid chain) that allows the two nucleotides to form base pairs with each other (e.g., a purine nucleotide of a nucleic acid that is complementary to a pyrimidine nucleotide of an opposing nucleic acid can form base pairs together by forming hydrogen bonds with each other). In some embodiments of the present application, complementary nucleotides can form base pairs in a Watson-Crick manner or in any other manner that allows the formation of a stable duplex. In some embodiments of the present application, two nucleic acid chains may have multiple double-stranded regions that form complementarity. In some embodiments of the present application, in DNA, adenine (A) is always paired with thymine (T), and in RNA, adenine (A) is paired with uracil (U); guanine (G) is always paired with cytosine (C). In some embodiments of the present application, complementary nucleotides may also include or be completely formed from non-Watson-Crick base pairs and/or base pairs formed from non-natural and modified nucleotides, such non-Watson-Crick base pairs include but are not limited to G:U wobble base pairing or Hoogstein base pairing. In some embodiments of the present application, nucleotides containing hypoxanthine as its base may be base paired with nucleotides containing adenine, cytosine or uracil. In some embodiments of the present application, nucleotides containing uracil, guanine or adenine may be replaced in the nucleotide sequence of the present application by nucleotides containing, for example, inosine (in the application, the capital letter "I" may represent hypoxanthine base, inosine or nucleotides containing inosine according to its contextual meaning) (this replacement is referred to as I modification). In some embodiments of the present application, adenine and cytosine anywhere in the oligonucleotide can be replaced by guanine and uracil, respectively, to form G-U wobble base pairing with the target mRNA.
一个寡核苷酸与另一个寡核苷酸的互补程度称为互补性,通过每条链中可以彼此形成氢键的碱基百分比来衡量,这由既定的碱基配对规则决定。寡核苷酸序列不需要与其相应的核酸序列“完全互补”(即“完美互补”)。在一些实施例中,如果第一核苷酸序列与第二核苷酸序列表现出至少70%、75%、80%、85%、90%、95%、96%、97%、98%或99%程度的序列互补性,则可以认为第一核苷酸序列与第二核苷酸序列互补。在一个示例性实施方案中,第一核苷酸序列的20个核碱基中有18个与第二核苷酸序列的相应区域配对,实现90%的互补性。非互补核碱基也称为“错配”,可能聚集或散布在互补碱基之间,不需要彼此相邻或与互补核碱基相邻。The degree of complementarity of an oligonucleotide to another oligonucleotide is called complementarity, which is measured by the percentage of bases that can form hydrogen bonds with each other in each chain, which is determined by established base pairing rules. Oligonucleotide sequences do not need to be "completely complementary" (i.e., "perfectly complementary") to their corresponding nucleic acid sequences. In some embodiments, if a first nucleotide sequence and a second nucleotide sequence show at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98% or 99% degree of sequence complementarity, then the first nucleotide sequence can be considered to be complementary to the second nucleotide sequence. In an exemplary embodiment, 18 of the 20 core bases of the first nucleotide sequence are paired with the corresponding regions of the second nucleotide sequence to achieve 90% complementarity. Non-complementary core bases are also referred to as "mismatches" and may be gathered or scattered between complementary bases, and do not need to be adjacent to each other or adjacent to complementary core bases.
本文中使用的“错配”包括但不限于:As used herein, "mismatches" include, but are not limited to:
1)两个相对的(独立的天然的或非天然的)核苷酸(除A-T、A-U或G-C外)配对;1) Two opposite (independent natural or unnatural) nucleotides (other than A-T, A-U or G-C) pair;
2)两个相对的(独立的天然或非天然的)核苷酸之间不形成氢键;2) No hydrogen bonds are formed between two opposing (independent natural or non-natural) nucleotides;
3)两个相对的(独立的天然或非天然的)核苷酸之间缺少碱基。3) The absence of a base between two opposing (independent natural or unnatural) nucleotides.
在一些实施例中,错配包括摆动碱基配对和Hoogstein碱基配对。In some embodiments, the mismatches include wobble base pairing and Hoogstein base pairing.
术语“完全互补”是指第一核苷酸序列和第二核苷酸序列在完全互补的区域中形成仅由沃森-克里克碱基对构成的杂交体。“充分互补”的寡核苷酸可以包括与目标RNA完全互补的内部区域(例如,至少7、8、9或10个核苷酸)。The term "fully complementary" refers to a first nucleotide sequence and a second nucleotide sequence that form a hybrid consisting only of Watson-Crick base pairs in a fully complementary region. A "fully complementary" oligonucleotide may include an internal region (e.g., at least 7, 8, 9, or 10 nucleotides) that is fully complementary to the target RNA.
如本文所用,封堵基团是指可以例如在反义链的5'端处与本文所提供的寡核苷酸缀合的基团,其可以减少或抑制核酸外切酶分解代謝。在一些实施例中,封堵基团可以減少或抑制寡核苷酸的RNA 干扰效应。在一些实施例中,封堵基团在提供RNA 干扰效应之前从寡核苷酸上裂解下来。封堵基团实例包括但不限无碱基核苷酸残基,反向无碱基核苷酸残基、M03和M06。As used herein, a blocking group refers to a group that can be conjugated to an oligonucleotide provided herein, for example at the 5' end of the antisense strand, which can reduce or inhibit exonuclease degradation metabolism. In some embodiments, the blocking group can reduce or inhibit the RNA interference effect of the oligonucleotide. In some embodiments, the blocking group is cleaved from the oligonucleotide before providing the RNA interference effect. Examples of blocking groups include but are not limited to abasic nucleotide residues, reverse abasic nucleotide residues, M03 and M06.
如本文所用,双链核苷酸试剂可以任选与一个或多个封堵基团缀合。封堵基团可以3'端、5'端或兩端与正义链、反义链或两条链连接。在一些实施例中,封堵基团与反义链缀合,具体地与反义链的5'端綴合。在一些实施例中,封堵基团通过核苷酸键与寡核苷酸(例如,反义链的5'端)缀合,并且核苷酸间键任选地如本文所描述的被修饰。在一些实施例中,封堵基团通过硫代磷酸酯与双链核苷酸试剂连接。在一些实施例中,封堵基团通过磷酸二酯键与双链核苷酸试剂连接。As used herein, double-stranded nucleotide reagents can be optionally conjugated with one or more blocking groups. The blocking group can be connected to the sense strand, antisense strand or two strands at the 3' end, 5' end or both ends. In certain embodiments, the blocking group is conjugated to the antisense strand, specifically to the 5' end of the antisense strand. In certain embodiments, the blocking group is conjugated to an oligonucleotide (e.g., the 5' end of the antisense strand) by a nucleotide bond, and the internucleotide bond is optionally modified as described herein. In certain embodiments, the blocking group is connected to the double-stranded nucleotide reagent by a thiophosphate. In certain embodiments, the blocking group is connected to the double-stranded nucleotide reagent by a phosphodiester bond.
在本发明中,M06修饰是指在单体(如核苷酸)的5’端或者3’端键合连接单体示例性的,被M06修饰后的结构: 在本发明中,(M06)是M06单体的残基。在一些实施例中,(M06)是通过键合连接到核苷酸的。In the present invention, M06 modification refers to the bonding of monomers at the 5' or 3' end of monomers (such as nucleotides). For example, The structure modified by M06: In the present invention, (M06) It is M06 monomer In some embodiments, (M06) is represented by Bonded to a nucleotide.
在本申请中,术语“核酸”和“多核苷酸”可互换使用,并指任何长度的核苷酸(脱氧核糖核苷酸或者核糖核苷酸或者其类似物)的聚合形式。所述多核苷酸可以具有任意的三维结构且可以执行任意的功能。所述多核苷酸可以包含在一个或多个碱基、糖和/或磷酸酯处,有本申请所述的或本领域已知的任意一个或多个修饰或取代。在一些实施方式中,所述的修饰的核苷酸可以是甲基化的核苷酸或核苷酸类似物。在一些实施方式中,可以在多核苷酸聚合物组装之前或之后对核苷酸结构进行修饰。所述多聚核苷酸可以在聚合后修饰,例如通过与标记组分偶联。所述多核苷酸聚合物可以被非核苷酸组分阻断。在本申请中,术语“核酸”和“多核苷酸”可以是双链和单链分子。除非另有说明或要求,否则本申请作为多核苷酸的任何实施方式包括双链形式和已知或据预测构成双链形式的两种互补单链形式中的每一种。举例来说,多核苷酸可以包括但不限于:基因或基因片段(例如探针、引物、EST或SAGE标签)、外显子、内含子、信使RNA(mRNA)、转移RNA、核糖体RNA、核酶、cDNA、重组多核苷酸、分支的多核苷酸、质粒、载体、任何序列的分离的DNA、任意序列的分离的RNA、核酸探针、siRNA、miRNA、shRNA、RNAi试剂和引物。In this application, the terms "nucleic acid" and "polynucleotide" are used interchangeably and refer to a polymeric form of nucleotides (deoxyribonucleotides or ribonucleotides or analogs thereof) of any length. The polynucleotide can have any three-dimensional structure and can perform any function. The polynucleotide can contain any one or more modifications or substitutions described in this application or known in the art at one or more bases, sugars and/or phosphates. In some embodiments, the modified nucleotides can be methylated nucleotides or nucleotide analogs. In some embodiments, the nucleotide structure can be modified before or after the assembly of the polynucleotide polymer. The polynucleotide can be modified after polymerization, for example, by coupling with a labeling component. The polynucleotide polymer can be blocked by non-nucleotide components. In this application, the terms "nucleic acid" and "polynucleotide" can be double-stranded and single-stranded molecules. Unless otherwise specified or required, any embodiment of the present application as a polynucleotide includes each of the double-stranded form and the two complementary single-stranded forms known or predicted to constitute the double-stranded form. For example, a polynucleotide can include, but is not limited to, a gene or gene fragment (e.g., a probe, a primer, an EST or SAGE tag), an exon, an intron, a messenger RNA (mRNA), a transfer RNA, a ribosomal RNA, a ribozyme, a cDNA, a recombinant polynucleotide, a branched polynucleotide, a plasmid, a vector, an isolated DNA of any sequence, an isolated RNA of any sequence, a nucleic acid probe, siRNA, miRNA, shRNA, an RNAi agent, and a primer.
在本申请中,术语“寡核苷酸”通常是指由多个核苷酸残基(脱氧核糖核苷酸或核糖核苷酸,或其相关的结构变体或合成类似物)通过磷酸二酯键(或其相关的结构变体或合成类似物)连接组成的聚合物。因此,虽然术语“寡核苷酸”一般指其中核苷酸残基和它们之间的连接是天然产生的核苷酸聚合物,但应理解,该术语的范围也包括各种类似物,包括但不限于:肽核酸(PNA)、氨基磷酸酯、硫代磷酸酯、甲基磷酸酯、2-O-甲基核糖核酸等。该分子的确切大小可取决于具体应用。寡核苷酸一般长度较短,通常约有10-30个核苷酸残基,但该术语也可指任何长度的分子,尽管术语“多核苷酸”或“核酸”一般用于较大的寡核苷酸。In the present application, the term "oligonucleotide" generally refers to a polymer composed of a plurality of nucleotide residues (deoxyribonucleotides or ribonucleotides, or its related structural variants or synthetic analogs) connected by a phosphodiester bond (or its related structural variants or synthetic analogs). Therefore, although the term "oligonucleotide" generally refers to a naturally occurring nucleotide polymer in which the nucleotide residues and the connection therebetween are naturally occurring, it should be understood that the scope of the term also includes various analogs, including but not limited to: peptide nucleic acid (PNA), phosphoramidate, phosphorothioate, methylphosphonate, 2-O-methylribonucleic acid, etc. The exact size of the molecule can depend on specific applications. Oligonucleotides are generally shorter in length, usually approximately having 10-30 nucleotide residues, but the term can also refer to molecules of any length, although the terms "polynucleotide" or "nucleic acid" are generally used for larger oligonucleotides.
在某些实施方式中,寡核苷酸包含一个或多个未修饰的核糖核苷(RNA)和/或未修饰的脱氧核糖核苷(DNA)和/或一个或多个修饰核苷。术语“修饰寡核苷酸”通常意指包含至少一个修饰核苷和/或至少一个修饰的核苷间键联的寡核苷酸。In certain embodiments, the oligonucleotide comprises one or more unmodified ribonucleosides (RNA) and/or unmodified deoxyribonucleosides (DNA) and/or one or more modified nucleosides. The term "modified oligonucleotide" generally refers to an oligonucleotide comprising at least one modified nucleoside and/or at least one modified internucleoside linkage.
在本申请中,术语“修饰的核苷”通常意指与天然存在的RNA或DNA核苷相比包含至少一个化学修饰的核苷。修饰的核苷包含修饰的糖部分和/或修饰的核碱基。In the present application, the term "modified nucleoside" generally means a nucleoside comprising at least one chemical modification compared to a naturally occurring RNA or DNA nucleoside. The modified nucleoside comprises a modified sugar moiety and/or a modified nucleobase.
在本申请中,术语“核碱基”通常意指杂环嘧啶或嘌呤化合物,它是所有核酸的组分且包括腺嘌呤(a)、鸟嘌呤(g)、胞嘧啶(c)、胸腺嘧啶(t)和尿嘧啶(u)。核苷酸可包括经修饰的核苷酸或核苷酸模拟物、无碱基位点(Ab或X)或替代物替代部分。如本申请所使用,“核碱基序列”通常意指不依赖于任何糖、键联或核碱基修饰的连续核碱基的顺序。术语“未修饰的核碱基”或“天然存在的核碱基”通常意指RNA或DNA的天然存在的杂环核碱基:嘌呤碱基腺嘌呤(a)和鸟嘌呤(g);以及胸腺嘧啶(t)、胞嘧啶(c)(包括5-甲基c)和尿嘧啶(u)。“修饰的核碱基”通常意指并非天然存在的核碱基的任何核碱基。In the present application, the term "nucleobase" generally refers to a heterocyclic pyrimidine or purine compound, which is a component of all nucleic acids and includes adenine (a), guanine (g), cytosine (c), thymine (t) and uracil (u). Nucleotides may include modified nucleotides or nucleotide mimetics, abasic sites (Ab or X) or substitutes for moieties. As used in the present application, "nucleobase sequence" generally refers to the order of consecutive nucleobases that are independent of any sugar, linkage or nucleobase modification. The term "unmodified nucleobase" or "naturally occurring nucleobase" generally refers to naturally occurring heterocyclic nucleobases of RNA or DNA: purine bases adenine (a) and guanine (g); and thymine (t), cytosine (c) (including 5-methyl c) and uracil (u). "Modified nucleobase" generally refers to any nucleobase that is not a naturally occurring nucleobase.
在本申请中,术语“糖部分”通常意指核苷的天然存在的糖部分或修饰的糖部分。术语“天然存在的糖部分”通常意指如在天然存在的RNA中发现的呋喃核糖基或如在天然存在的DNA中发现的脱氧呋喃核糖基。“修饰的糖部分”意指取代的糖部分或糖替代物。In this application, the term "sugar moiety" generally refers to the naturally occurring sugar moiety or modified sugar moiety of a nucleoside. The term "naturally occurring sugar moiety" generally refers to the ribofuranosyl group as found in naturally occurring RNA or the deoxyribofuranosyl group as found in naturally occurring DNA. "Modified sugar moiety" means a substituted sugar moiety or sugar surrogate.
在本申请中,术语“核苷间键联”通常意指寡核苷酸中相邻核苷之间的共价键联。“天然存在的核苷间键联”意指3’至5’磷酸二酯键联。“修饰的核苷间键联”意指除了天然存在的核苷间键联之外的任何核苷间键联。In this application, the term "internucleoside linkage" generally means a covalent linkage between adjacent nucleosides in an oligonucleotide. A "naturally occurring internucleoside linkage" means a 3' to 5' phosphodiester linkage. A "modified internucleoside linkage" means any internucleoside linkage other than a naturally occurring internucleoside linkage.
在本申请中,术语“靶核酸”或“靶序列”通常指在IGF-1R基因转录期间所形成mRNA分子的核苷酸序列的连续部分,包括作为主要转录产物的RNA加工产物的mRNA。序列的靶部分应至少足够长以作为在IGF-1R基因转录期间形成的mRNA分子的核苷酸序列的该部分位置处或附近iRNA指导的切割的底物。在一个实施方式中,该靶序列在IGF-1R的蛋白质编码区内。靶序列可为约19-36个核苷酸的长度,例如,优选约19-30个核苷酸的长度。上述范围和长度中间的范围和长度也包括为本申请的部分。In this application, the term "target nucleic acid" or "target sequence" generally refers to a continuous portion of the nucleotide sequence of an mRNA molecule formed during transcription of the IGF-1R gene, including mRNA that is an RNA processing product of the primary transcription product. The target portion of the sequence should be at least long enough to serve as a substrate for iRNA-guided cleavage at or near that portion of the nucleotide sequence of the mRNA molecule formed during transcription of the IGF-1R gene. In one embodiment, the target sequence is within the protein coding region of IGF-1R. The target sequence can be about 19-36 nucleotides in length, for example, preferably about 19-30 nucleotides in length. Ranges and lengths intermediate to the above ranges and lengths are also included as part of this application.
在本申请中,术语“IGF-1R蛋白”是指一种人源的四聚体跨膜酪氨酸激酶,所述IGF-1R蛋白是激素胰岛素样生长因子1的细胞表面受体,是一种在分子结构上与多肽类激素胰岛素类似的激素,在生长发育和成人的合成代谢中有重要作用。IGF-1R的激活可刺激细胞增殖、存活、转化、转移和血管生成。在本申请中,术语“IGF-1R基因”是指编码IGF-1R蛋白的基因,该基因编码的蛋白质分子量约为320kDa,由两个α亚基和两个β亚基组成。其中,所述IGF-1R基因可以被RNA抑制剂可以调控或者抑制,在一些实施方式中,RNA抑制剂可以调控或者抑制IGF-1R基因的mRNA序列(NM_000875.5Homo sapiens insulin-like growth factor 1 receptor)。其中,IGF-1R基因的转录序列为如SEQ ID NO:828所示。In the present application, the term "IGF-1R protein" refers to a human tetrameric transmembrane tyrosine kinase, which is a cell surface receptor for the hormone insulin-like growth factor 1, a hormone similar in molecular structure to the polypeptide hormone insulin, and plays an important role in growth and development and adult anabolism. Activation of IGF-1R can stimulate cell proliferation, survival, transformation, metastasis and angiogenesis. In the present application, the term "IGF-1R gene" refers to a gene encoding an IGF-1R protein, which has a molecular weight of about 320 kDa and is composed of two α subunits and two β subunits. Among them, the IGF-1R gene can be regulated or inhibited by an RNA inhibitor, and in some embodiments, the RNA inhibitor can regulate or inhibit the mRNA sequence of the IGF-1R gene (NM_000875.5 Homo sapiens insulin-like growth factor 1 receptor). Among them, the transcription sequence of the IGF-1R gene is as shown in SEQ ID NO: 828.
在本申请中,术语“封堵基团”是指可以选择性地与本申请所述的双链体siRNA或包含双链体siRNA的药物结合的基团,所述封堵基团位于正义链或正义核酸片段、反义链或反义核酸片段或两个链上。封堵基团可以附加到正义链或正义核酸片段、反义链或反义核酸片段或两个链的3'端、5'端或两个端。在某些实施例中,封堵基团结合在反义链或反义核酸片段上,特别是反义链或反义核酸片段的5'端。在某些实施例中,封堵基团通过核苷酸间链接与寡核苷酸(例如,反义链或反义核酸片段的5'端)结合,且该核苷酸间链接可选地如上所述进行修饰。在某些实施例中,封堵基团通过磷硫酸酯链接到双链寡核苷酸药剂。在某些实施例中,封堵基团通过磷酸二酯链接到双链寡核苷酸药剂。在本申请中,为了减少或抑制外切核酸酶的降解,“封堵基团”可结合到本申请所述的双链体siRNA反义链或反义核酸片段的5'端。在某些实施例中,封堵基团可能减少或抑制寡核苷酸的RNA干扰效果。在某些实施例中,封堵基团在提供RNA干扰效果之前从寡核苷酸中切除。举例来说,封堵基团的例子包括但不限于无碱基残基、反向无碱基残基和(M06)。In the present application, the term "blocking group" refers to a group that can be selectively combined with a duplex siRNA described in the present application or a drug comprising a duplex siRNA, and the blocking group is located on a sense strand or a sense nucleic acid fragment, an antisense strand or an antisense nucleic acid fragment or two chains. The blocking group can be attached to a sense strand or a sense nucleic acid fragment, an antisense strand or an antisense nucleic acid fragment or 3' end, 5' end or two ends of the two chains. In certain embodiments, the blocking group is attached to the antisense strand or the antisense nucleic acid fragment, particularly the 5' end of the antisense strand or the antisense nucleic acid fragment. In certain embodiments, the blocking group is linked to an oligonucleotide (for example, the 5' end of the antisense strand or the antisense nucleic acid fragment) by an internucleotide link, and the internucleotide link is optionally modified as described above. In certain embodiments, the blocking group is linked to a double-stranded oligonucleotide agent by phosphosulfate. In certain embodiments, the blocking group is linked to a double-stranded oligonucleotide agent by a phosphodiester. In the present application, in order to reduce or inhibit the degradation of exonucleases, a "blocking group" may be attached to the 5' end of the duplex siRNA antisense strand or antisense nucleic acid fragment described in the present application. In certain embodiments, the blocking group may reduce or inhibit the RNA interference effect of the oligonucleotide. In certain embodiments, the blocking group is excised from the oligonucleotide before providing the RNA interference effect. For example, examples of blocking groups include, but are not limited to, abasic residues, reverse abasic residues, and (M06).
在本申请中,术语“配体”通常是指能够共价地或以其它化学方式与生物活性物质(如寡核苷酸)结合的任何化合物或分子。在某些实施方式中,配体能够与另一种化合物例如受体直接或间接地相互作用,与配体相互作用的受体可以存在于细胞表面上,或可替代地可以是细胞内和/或细胞间受体,配体与受体的相互作用可以导致生化反应,或可以仅仅是物理相互作用或结合。In this application, the term "ligand" generally refers to any compound or molecule that can be covalently or otherwise chemically bound to a biologically active substance (such as an oligonucleotide). In certain embodiments, a ligand can interact directly or indirectly with another compound such as a receptor, and the receptor that interacts with the ligand can be present on the cell surface, or alternatively can be an intracellular and/or intercellular receptor, and the interaction of the ligand with the receptor can result in a biochemical reaction, or can be simply a physical interaction or combination.
在本申请中,“缀合”是指两个或多个各自具有特定功能的化学部分之间以共价连接的方式彼此连接;相应地,“缀合体”是指该各个化学部分之间通过共价连接而形成的化合物。例如,“双链核糖核酸缀合体”表示一个或多个具有特定功能的化学部分(如递送系统、配体基团或缀合基团)共价连接至双链核糖核酸上而形成的化合物或复合体。在一些实施例中,所述递送系统、配体基团或缀合基团可以连接在双链核糖核酸的任一核苷酸的磷酸基团、糖环(包括所述递送系统、配体基团或缀合基团通过磷酸二酯键与该核苷酸3’位或5’位的原子共价连接)、2’-位羟基、5’-位羟基或者碱基上。在一些实施例中,所述递送系统、配体基团或缀合基团还可以连接在核苷酸2’-位上,此时核苷酸之间采用2’-5’磷酸二酯键连接。在一些实施例中,所述递送系统、配体基团或缀合基团还可以连接在核苷酸3’-位上,此时核苷酸之间采用3’-5’磷酸二酯键连接。在一些实施例中,上述递送系统、配体基团或缀合基团与核苷酸的连接可以进一步被修饰,如:硫代修饰(即通过硫代磷酸二酯键连接)。In the present application, "conjugation" refers to the connection between two or more chemical parts each having a specific function in a covalently linked manner; accordingly, "conjugate" refers to a compound formed by covalently linking the chemical parts. For example, "double-stranded RNA conjugate" means a compound or complex formed by covalently linking one or more chemical parts (such as a delivery system, a ligand group or a conjugated group) with a specific function to a double-stranded RNA. In some embodiments, the delivery system, ligand group or conjugated group can be connected to the phosphate group, sugar ring (including the delivery system, ligand group or conjugated group covalently linked to the atom at the 3' or 5' position of the nucleotide through a phosphodiester bond), 2'-hydroxyl, 5'-hydroxyl or base of any nucleotide of the double-stranded RNA. In some embodiments, the delivery system, ligand group or conjugated group can also be connected to the 2'-position of the nucleotide, and the nucleotides are connected by a 2'-5' phosphodiester bond. In some embodiments, the delivery system, ligand group or conjugated group can also be connected to the 3'-position of the nucleotide, and the nucleotides are connected by a 3'-5' phosphodiester bond. In some embodiments, the connection between the delivery system, ligand group or conjugated group and the nucleotide can be further modified, such as: thio modification (i.e., connected by a thiophosphodiester bond).
在本申请中,术语“诱导”、“抑制”、“加强”、“升高”、“增加”、“减少”、“降低”等通常表示两个状态之间的定量差异。例如,“有效抑制IGF-1R的活性或基因表达的量”意指处理样品中IGF-1R的活性或基因表达的水平将低于未处理样品中IGF-1R活性或基因表达的水平。所述术语例如适用于基因表达水平和活性水平。术语“减少”和“降低”可互换使用并且通常表示小于原来的任何变化。“减少”和“降低”是相对的术语,需要在测量前和测量后间进行比较。“减少”和“降低”包括完全耗竭。In this application, the terms "induce", "inhibit", "enhance", "elevate", "increase", "reduce", "lower" and the like generally refer to a quantitative difference between two states. For example, "an amount effective to inhibit the activity or gene expression of IGF-1R" means that the level of activity or gene expression of IGF-1R in the treated sample will be lower than the level of IGF-1R activity or gene expression in the untreated sample. The terms apply, for example, to gene expression levels and activity levels. The terms "reduce" and "reduce" are used interchangeably and generally refer to any change that is less than the original. "Reduce" and "reduce" are relative terms and require comparison between before and after measurement. "Reduce" and "reduce" include complete depletion.
在某些实施方式中,术语“降低”可以通过本领域已知标准方法(诸如本申请中描述的那些)检测的,基因、基因产物例如蛋白质或生物标志物在第一样品中的基因表达水平/量与相应基因、基因产品例如蛋白质或生物标志物在第二样品中的基因表达水平/量相比约5%、10%、20%、25%、30%、40%、50%、60%、70%、80%、85%、90%、95%、或100%的总体降低。在某些实施方式中,术语“降低”指第一样品中基因或生物标志物的基因表达水平/量的降低,其中该降低是第二样品中相应基因或生物标志物的基因表达水平/量的至少约0.9倍、0.8倍、0.7倍、0.6倍、0.5倍、0.4倍、0.3倍、0.2倍、0.1倍、0.05倍、或0.01倍。在某些实施方式中,第一样品是自受试者获得的样品,而第二样品是参照样品。In certain embodiments, the term "reduction" can be detected by standard methods known in the art (such as those described in the present application), and the gene expression level/amount of a gene, gene product, such as a protein or a biomarker in a first sample is compared with the gene expression level/amount of a corresponding gene, gene product, such as a protein or a biomarker in a second sample by about 5%, 10%, 20%, 25%, 30%, 40%, 50%, 60%, 70%, 80%, 85%, 90%, 95%, or 100% overall reduction. In certain embodiments, the term "reduction" refers to the reduction of the gene expression level/amount of a gene or biomarker in a first sample, wherein the reduction is at least about 0.9 times, 0.8 times, 0.7 times, 0.6 times, 0.5 times, 0.4 times, 0.3 times, 0.2 times, 0.1 times, 0.05 times, or 0.01 times of the gene expression level/amount of the corresponding gene or biomarker in the second sample. In certain embodiments, the first sample is a sample obtained from a subject, and the second sample is a reference sample.
在本申请中,术语“基因表达”通常意指基因最终产生蛋白质的过程。所述的基因表达包括但不限于转录、转录后修饰(例如,剪接、聚腺苷酸化、添加5’-帽)和翻译。In this application, the term "gene expression" generally refers to the process by which a gene ultimately produces a protein. The gene expression includes, but is not limited to, transcription, post-transcriptional modification (e.g., splicing, polyadenylation, addition of a 5'-cap) and translation.
在本申请中,术语“药学上可接受的”通常是指不干扰活性成分生物学活性的有效性的一种或多种无毒物质。这类制剂通常可含有盐、赋形剂、缓冲剂、防腐剂、相容性载体和任选的其它治疗剂。这类药学上可接受的制剂通常也可包含适合给予人的相容性固体或液体填料、稀释剂或包囊材料。用于医药时,盐应该是药学上可接受的盐,但可方便地使用非药学上可接受的盐来制备药学上可接受的盐,不能将它们排除在本申请范围以外。这类药理学和药学上可接受的盐包括但不限于由以下酸制备的盐:氢氯酸、氢溴酸、硫酸、硝酸、磷酸、马来酸、乙酸、水杨酸、柠檬酸、硼酸、甲酸、丙二酸、琥珀酸等。药学上可接受的盐也可制备成碱金属盐或碱土金属盐,如钠盐、钾盐或钙盐。In the present application, the term "pharmaceutically acceptable" generally refers to one or more non-toxic substances that do not interfere with the effectiveness of the biological activity of the active ingredient. Such preparations may generally contain salts, excipients, buffers, preservatives, compatible carriers and optional other therapeutic agents. Such pharmaceutically acceptable preparations may also generally contain compatible solid or liquid fillers, diluents or encapsulating materials suitable for administration to humans. When used in medicine, the salt should be a pharmaceutically acceptable salt, but non-pharmaceutically acceptable salts can be conveniently used to prepare pharmaceutically acceptable salts, and they cannot be excluded from the scope of this application. Such pharmacologically and pharmaceutically acceptable salts include, but are not limited to, salts prepared from the following acids: hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, maleic acid, acetic acid, salicylic acid, citric acid, boric acid, formic acid, malonic acid, succinic acid, etc. Pharmaceutically acceptable salts can also be prepared as alkali metal salts or alkaline earth metal salts, such as sodium salts, potassium salts or calcium salts.
在本申请中,术语“预防和/或治疗”不仅包括预防和/或治疗疾病,还通常包括预防疾病的发作,减缓或逆转疾病的进展,预防或减缓与疾病相关的一种或多种症状的发作,减少和/或减轻与疾病相关的一种或多种症状,降低疾病和/或与其相关的任何症状的严重程度和/或持续时间和/或预防疾病和/或与其相关的任何症状的严重程度的进一步增加,预防、减少或逆转由疾病引起的任何生理损伤,以及通常对正在治疗的患者有益的任何药理学作用。本申请的RNAi剂或药物组合物形成可行的治疗剂不需要实现完全治愈或根除疾病的任何症状或表现。如在相关领域中所认识到的,用作治疗剂的药物可降低给定疾病状态的严重程度,但不需要消除疾病的每种表现才能被认为是有用治疗剂。类似地,预防性施用的治疗构成可行的预防剂不需要完全有效地预防病症的发作。简单地在受试者中减少疾病的影响(例如,通过减少其症状的数量或严重程度,或通过提高另一种治疗的有效性,或通过产生另一种有益效果),或减少疾病发生或恶化的可能性就足够了。In the present application, the term "prevention and/or treatment" includes not only prevention and/or treatment of diseases, but also generally includes prevention of the onset of diseases, slowing or reversing the progression of diseases, preventing or slowing the onset of one or more symptoms associated with diseases, reducing and/or alleviating one or more symptoms associated with diseases, reducing the severity and/or duration of diseases and/or any symptoms associated therewith, and/or preventing further increase in the severity of diseases and/or any symptoms associated therewith, preventing, reducing or reversing any physiological damage caused by diseases, and any pharmacological effects that are generally beneficial to patients being treated. The RNAi agent or pharmaceutical composition of the present application does not need to achieve complete cure or eradication of any symptoms or manifestations of diseases to form a viable therapeutic agent. As recognized in the relevant art, drugs used as therapeutic agents can reduce the severity of a given disease state, but do not need to eliminate every manifestation of the disease to be considered a useful therapeutic agent. Similarly, prophylactically administered treatments constitute viable preventive agents that do not need to completely and effectively prevent the onset of symptoms. It is sufficient to simply reduce the impact of the disease in the subject (e.g., by reducing the number or severity of its symptoms, or by increasing the effectiveness of another treatment, or by producing another beneficial effect), or reduce the likelihood of disease occurrence or exacerbation.
在本申请中,术语“疾病”或“病症”可以互换使用,通常是指受试者与正常状态的任意偏离,例如身体或某些器官的状态的任何变化,妨碍或扰乱了功能的履行,和/或在患病或与其接触的人中引起症状例如不适、机能障碍、痛苦或甚至死亡。疾病或病症还可以称为失调(distemper)、不适(ailing)、小病(ailment)、疾病(malady)、紊乱(disorder)、疾病(sickness)、生病(illness)、身体不适(complaint)。In this application, the terms "disease" or "disorder" are used interchangeably and generally refer to any deviation of a subject from a normal state, such as any change in the state of the body or certain organs that prevents or disturbs the performance of functions, and/or causes symptoms such as discomfort, dysfunction, pain or even death in the person suffering from the disease or contacting it. Disease or disorder may also be referred to as distemper, discomfort, ailment, malady, disorder, sickness, illness, complaint.
本申请中,术语“施用”通常是指通过任意引入或递送途径将本申请药物制剂引入受试者的身体中。可以采用本领域技术人员已知的用于使细胞、器官或组织与所述药物接触的任何方法。所述施用可以包括而不限于静脉内、动脉内、鼻内、腹内、肌内、皮下透皮或口服。每日剂量可以划分成一个、两个或更多个合适形式的剂量以在某个时间段期间的一个、两个或更多个时间施用。In the present application, the term "administering" generally refers to introducing the present application's pharmaceutical preparation into the body of a subject by any introduction or delivery route. Any method known to those skilled in the art for contacting cells, organs or tissues with the drug can be used. The administration may include, but is not limited to, intravenous, intraarterial, intranasal, intraperitoneal, intramuscular, subcutaneous transdermal or oral administration. The daily dose may be divided into one, two or more suitable forms of dosage to be administered at one, two or more times during a certain time period.
在本申请中,术语“接触”通常是指两种两个或更多个不同类型的物质以任何顺序、任何方式以及任何时长接触在一起。接触可以发生在体内(in vivo)、间接体内(ex vivo)或体外(in vitro)。在某些实施方式中,可以是指使本申请的RNAi剂或组合物直接接触细胞或组织。在另一些实施方式中,该术语是指使本申请的RNA抑制剂或组合物间接接触细胞或组织。例如,本申请的方法包括其中受试者接触本申请的RNA抑制剂或组合物,然后RNA抑制剂或组合物通过扩散或本领域已知的任何其他主动运输或被动运输过程(化合物通过该过程在体内循环)接触细胞或组织的方法。In the present application, the term "contact" generally refers to two or more different types of substances being in contact with each other in any order, in any manner, and for any duration. Contact can occur in vivo, ex vivo, or in vitro. In certain embodiments, it may refer to direct contact of the RNAi agent or composition of the present application with a cell or tissue. In other embodiments, the term refers to indirect contact of the RNA inhibitor or composition of the present application with a cell or tissue. For example, the method of the present application includes a method in which a subject contacts an RNA inhibitor or composition of the present application, and then the RNA inhibitor or composition contacts a cell or tissue by diffusion or any other active transport or passive transport process known in the art (by which the compound circulates in the body).
在本申请中,术语“有效量”或“有效剂量”通常是指足以实现或至少部分实现所需效果的量。药物或治疗剂的“治疗有效量”或“治疗有效剂量”通常是当单独使用或与另一种治疗剂组合使用时促进疾病消退(这通过疾病症状严重程度的降低、疾病无症状期的频度和持续时间的增加、或者由于罹患疾病而引起的损害或残疾的预防来证明)的任何药物量。药物的“预防有效量”或“预防有效剂量”通常是指当单独或与另一种治疗剂组合给有疾病发展或疾病复发的风险的受试者施用时抑制疾病的发展或复发的药物量。可以使用本领域技术人员已知的多种方法对治疗剂或预防剂促进疾病消退或抑制疾病发展或复发的能力进行评估,比如在处于临床试验期间的人类受试者中、在动物模型系统中预测对人类的功效、或者通过在体外测定中测定药剂的活性。在某些实施方式中,“有效量”是指产生预期药理学、治疗性或预防性结果的RNA抑制剂的量。In the present application, the term "effective amount" or "effective dose" generally refers to an amount sufficient to achieve or at least partially achieve the desired effect. A "therapeutically effective amount" or "therapeutically effective dose" of a drug or therapeutic agent is generally any amount of a drug that promotes disease regression (which is demonstrated by a reduction in the severity of disease symptoms, an increase in the frequency and duration of disease asymptomatic periods, or the prevention of damage or disability caused by suffering from a disease) when used alone or in combination with another therapeutic agent. A "preventive effective amount" or "preventive effective dose" of a drug generally refers to an amount of a drug that inhibits the development or recurrence of a disease when administered alone or in combination with another therapeutic agent to a subject at risk of disease development or disease recurrence. The ability of a therapeutic agent or preventive agent to promote disease regression or inhibit disease development or recurrence can be evaluated using a variety of methods known to those skilled in the art, such as in human subjects during clinical trials, in animal model systems predicting efficacy in humans, or by measuring the activity of a pharmaceutical agent in an in vitro assay. In certain embodiments, an "effective amount" refers to the amount of an RNA inhibitor that produces an expected pharmacological, therapeutic or preventive result.
在本申请中,术语“受试者”通常是指需要诊断、预后、改善、预防和/或治疗疾病的人或非人动物(包括哺乳动物),诸如人、非人灵长类动物(猿、长臂猿、大猩猩、黑猩猩、猩猩、猕猴)、家畜(狗和猫)、农场动物(家禽如鸡、鸭、马、牛、山羊、绵羊、猪)和实验动物(小鼠、大鼠、兔、豚鼠)。人受试者包括胎儿、新生儿、婴儿、青少年和成人受试者。受试者包括动物疾病模型。In this application, the term "subject" generally refers to a human or non-human animal (including mammals) that needs to diagnose, prognose, improve, prevent and/or treat a disease, such as humans, non-human primates (apes, gibbons, gorillas, chimpanzees, orangutans, macaques), livestock (dogs and cats), farm animals (poultry such as chickens, ducks, horses, cattle, goats, sheep, pigs) and experimental animals (mice, rats, rabbits, guinea pigs). Human subjects include fetuses, newborns, infants, adolescents and adult subjects. Subjects include animal disease models.
在本申请中,术语“包括”、“包含”、“具有”、“可以”、“含有”及其变体通常旨在是开放式过渡性短语、术语或词语,其不排除额外行为或结构的可能性。术语“由……组成”通常表示不能存在别的组分(或同样地,特征、整数、步骤、等)。除非上下文另有明确规定,单数形式如英文的“a”,“an”,“the”,中文的“一个”、“一种”和“所述/该”一般包括所指代事物的复数形式。In this application, the terms "include", "comprising", "having", "may", "containing" and their variations are generally intended to be open transitional phrases, terms or words that do not exclude the possibility of additional actions or structures. The term "consisting of..." generally means that no other components (or similarly, features, integers, steps, etc.) can be present. Unless the context clearly dictates otherwise, singular forms such as "a", "an", "the" in English, "a", "a kind" and "described/the" in Chinese generally include plural forms of the referred things.
在本申请中,术语“约”通常意指大、粗略地(roughly)、或左右(around)。当术语“约”用于指涉数值范围时,截值或特定数值用于指示所载明的数值可与该列举数值有多达10%的差异。因此,术语“约”可用于涵盖自特定值±10%或更少的变异、±5%或更少的变异、±1%或更少的变异、±0.5%或更少的变异、或±0.1%或更少的变异。In this application, the term "about" generally means roughly, roughly, or around. When the term "about" is used to refer to a numerical range, a cutoff or a specific value is used to indicate that the stated value may differ from the recited value by up to 10%. Thus, the term "about" can be used to cover variations of ±10% or less, ±5% or less, ±1% or less, ±0.5% or less, or ±0.1% or less from a specific value.
应理解,数字或一系列数字之前的术语“至少”包括与该术语“至少”相邻的数字,及逻辑上包括在内的所有后续数字或整数,如从上下文中明确的。例如,核酸分子中的核苷酸数目必需为整数。例如,“21个核苷酸的核酸分子中的至少19个核苷酸”意指19、20或21个核苷酸具有所指示的性质。当“至少”出现在一系列数字或范围之前时,应理解“至少”可修饰该系列或范围中每一个数字。It should be understood that the term "at least" preceding a number or a series of numbers includes the numbers adjacent to the term "at least", and all subsequent numbers or integers logically included, as clear from the context. For example, the number of nucleotides in a nucleic acid molecule must be an integer. For example, "at least 19 nucleotides in a nucleic acid molecule of 21 nucleotides" means that 19, 20 or 21 nucleotides have the indicated properties. When "at least" appears before a series of numbers or ranges, it should be understood that "at least" can modify each number in the series or range.
应理解本文中采用的“不超过”或“低于”指与该短语相邻且逻辑上较低的值或整数,如从上下文逻辑而言,至零。例如,具有“不超过3个核苷酸”的突出端的双链体具有3、2、1或0个核苷酸的突出端。当“不超过”出现在一系列数字或范围之前时,应理解,“不超过”可修饰该系列或范围内每个数字。本文所采用范围同时包括上限与下限。It should be understood that "no more than" or "less than" as used herein refers to a value or integer that is adjacent to the phrase and logically lower, such as from the logic of the context, to zero. For example, a duplex having an overhang of "no more than 3 nucleotides" has an overhang of 3, 2, 1 or 0 nucleotides. When "no more than" appears before a series of numbers or ranges, it should be understood that "no more than" can modify each number in the series or range. As used herein, ranges include both upper and lower limits.
发明详述DETAILED DESCRIPTION OF THE INVENTION
反义链或反义核酸片段与正义链或正义核酸片段Antisense strand or antisense nucleic acid fragment and sense strand or sense nucleic acid fragment
一方面,本申请提供一种抑制胰岛素样生长因子1受体(IGF-1R)基因表达的RNA抑制剂,包含反义链,所述反义链与编码IGF-1R的序列(SEQ ID NO:828)中连续的至少15个核苷酸形成互补区域,所述互补区域具有0、1、2、3、4或5个错配,优选的所述双链体互补区域长度为15-30个核苷酸对,更优选的为17-23个核苷酸对。例如,所述双链体互补区域长度可以为17个核苷酸对、18个核苷酸对、19个核苷酸对、20个核苷酸对、21个核苷酸对、22个核苷酸对、23个核苷酸对。On the one hand, the present application provides an RNA inhibitor for inhibiting the expression of insulin-like growth factor 1 receptor (IGF-1R) gene, comprising an antisense strand, wherein the antisense strand forms a complementary region with at least 15 consecutive nucleotides in a sequence encoding IGF-1R (SEQ ID NO: 828), wherein the complementary region has 0, 1, 2, 3, 4 or 5 mismatches, and preferably the length of the duplex complementary region is 15-30 nucleotide pairs, more preferably 17-23 nucleotide pairs. For example, the length of the duplex complementary region can be 17 nucleotide pairs, 18 nucleotide pairs, 19 nucleotide pairs, 20 nucleotide pairs, 21 nucleotide pairs, 22 nucleotide pairs, or 23 nucleotide pairs.
在某些的实施方式中,RNA抑制剂包括用于抑制在细胞中,如受试者(例如,哺乳动物)的细胞中,IGF-1R基因表达的单链寡核苷酸或双链核糖核酸(dsRNA)分子。其中,该dsRNA包括反义链或反义核酸片段,其具有与在IGF-1R基因的表达中所形成mRNA的至少一部分互补的互补区。该互补区为约12-30个核苷酸长度(例如,约30、29、28、27、26、25、24、23、22、21、20、19、18、17、16、15、14、13或12个核苷酸长度)。In certain embodiments, the RNA inhibitor comprises a single-stranded oligonucleotide or double-stranded ribonucleic acid (dsRNA) molecule for inhibiting the expression of the IGF-1R gene in a cell, such as a cell of a subject (e.g., a mammal). The dsRNA comprises an antisense strand or an antisense nucleic acid fragment having a complementary region complementary to at least a portion of the mRNA formed in the expression of the IGF-1R gene. The complementary region is about 12-30 nucleotides in length (e.g., about 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13 or 12 nucleotides in length).
dsRNA包括两个RNA链,其可在dsRNA使用的条件下互补并杂交形成双链体结构(互补区)。dsRNA的一条链(反义链或反义核酸片段)包括与基本上互补且通常完全互补的互补区。可源自IGF-1R基因表达期间形成mRNA的序列。另一条链(正义链或正义核酸片段)包括与反义链或反义核酸片段互补的区域,使得在合适条件下组合时,两条链可杂交并形成双链体结构。通常,双链体结构的长度为12至30个碱基对。类似地,与的互补区的长度为12至30个核苷酸,例如在15-29、15-28、15-27、15-26、15-25、15-24、15-23、15-22、15-21、15-20、15-19、15-18、15-17、18-30、18-29、18-28、18-27、18-26、18-25、18-24、18-23、18-22、18-21、18-20、19-30、19-29、19-28、19-27、19-26、19-25、19-24、19-23、19-22、19-21、19-20、20-30、20-29、20-28、20-27、20-26、20-25、20-24、20-23、20-22、20-21、21-30、21-29、21-28、21-27、21-26、21-25、21-24、21-23、或21-22个核苷酸之间的长度。dsRNA includes two RNA chains, which can complement and hybridize to form a duplex structure (complementary region) under the conditions of dsRNA use. One chain of dsRNA (antisense strand or antisense nucleic acid fragment) includes a complementary region that is substantially complementary and usually completely complementary to the antisense strand. It can be derived from the sequence of mRNA formed during IGF-1R gene expression. The other chain (sense strand or sense nucleic acid fragment) includes a region complementary to the antisense strand or antisense nucleic acid fragment, so that when combined under suitable conditions, the two chains can hybridize and form a duplex structure. Generally, the length of the duplex structure is 12 to 30 base pairs. Similarly, the complementary region to is 12 to 30 nucleotides in length, for example, at 15-29, 15-28, 15-27, 15-26, 15-25, 15-24, 15-23, 15-22, 15-21, 15-20, 15-19, 15-18, 15-17, 18-30, 18-29, 18-28, 18-27, 18-26, 18-25, 18-24, 18-23, 18-22, 18-21, 18-20, 19-30, 19-2 27, 21-26, 21-25, 21-24, 21-23, or 21-22 nucleotides in length.
在某些实施方式中,dsRNA为约19至约23个核苷酸长度,或约24至约30个核苷酸长度。通常,dsRNA的长度足以用作Dicer酶的底物。例如,本领域公知,长度大于约21-23个核苷酸的dsRNA可用作Dicer的底物。本领域技术人员也了解,被靶向切割的RNA的区域通常为较大RNA分子(通常mRNA分子)的部分。靶的“一部分”为mRNA靶的连续核苷酸,其长度足以允许其为RNAi指导切割(即经由RISC途径的切割)的底物。In certain embodiments, the dsRNA is about 19 to about 23 nucleotides in length, or about 24 to about 30 nucleotides in length. Typically, the length of the dsRNA is sufficient to serve as a substrate for the Dicer enzyme. For example, it is well known in the art that dsRNAs greater than about 21-23 nucleotides in length can be used as substrates for Dicer. It is also understood by those skilled in the art that the region of the RNA targeted for cutting is typically a portion of a larger RNA molecule (typically an mRNA molecule). A "portion" of a target is a continuous nucleotide of an mRNA target that is long enough to allow it to be a substrate for RNAi-guided cutting (i.e., cutting via the RISC pathway).
本领域技术人员也应理解,互补区域为dsRNA的主要功能部分,例如,约19至约30碱基对的双链体区,例如,约15-29、15-28、15-27、15-26、15-25、15-24、15-23、15-22、15-21、15-20、15-19、15-18、15-17、18-30、18-29、18-28、18-27、18-26、18-25、18-24、18-23、18-22、18-21、18-20、19-30、19-29、19-28、19-27、19-26、19-25、19-24、19-23、19-22、19-21、19-20、20-30、20-29、20-28、20-27、20-26、20-25、20-24、20-23、20-22、20-21、21-30、21-29、21-28、21-27、21-26、21-25、21-24、21-23、或21-22碱基对。It will also be understood by those skilled in the art that the complementary region is the major functional portion of the dsRNA, e.g., a duplex region of about 19 to about 30 base pairs, e.g., about 15-29, 15-28, 15-27, 15-26, 15-25, 15-24, 15-23, 15-22, 15-21, 15-20, 15-19, 15-18, 15-17, 18-30, 18-29, 18-28, 18-27, 18-26, 18-25, 18-24, 18-23, 18-22, 18-21 21-29, 21-28, 21-27, 21-26, 21-25, 21-24, 21-23, or 21-22 base pairs.
在某些实施方式中,正义链或正义核酸片段和反义链或反义核酸片段之间至少有约80%的碱基互补。In certain embodiments, there is at least about 80% base complementarity between the sense strand or sense nucleic acid segment and the antisense strand or antisense nucleic acid segment.
在某些实施方式中,其中所述正义链或正义核酸片段和反义链或反义核酸片段各自独立地为19-30个核苷酸。In certain embodiments, the sense strand or sense nucleic acid fragment and the antisense strand or antisense nucleic acid fragment are each independently 19-30 nucleotides.
在某些实施方式中,其中所述正义链或正义核酸片段和反义链或反义核酸片段各自独立地为17-25个核苷酸。In certain embodiments, the sense strand or sense nucleic acid fragment and the antisense strand or antisense nucleic acid fragment are each independently 17-25 nucleotides.
在某些实施方式中,其中所述正义链或正义核酸片段和反义链或反义核酸片段各自独立地为19-23个核苷酸。In certain embodiments, the sense strand or sense nucleic acid fragment and the antisense strand or antisense nucleic acid fragment are each independently 19-23 nucleotides.
在一些实施方式中,其中所述正义链总长度为15-30个核苷酸,优选的所述正义链总长度为16-23个核苷酸,更优选的所述正义链总长度为19、20或21个核苷酸In some embodiments, the total length of the sense strand is 15-30 nucleotides, preferably the total length of the sense strand is 16-23 nucleotides, and more preferably the total length of the sense strand is 19, 20 or 21 nucleotides.
在一些实施方式中,其中所述反义链总长度为19-30个核苷酸,优选的所述反义链总长度为19-27个核苷酸,更有选的所述反义链总长度为21、22、23、24、25、26或27个核苷酸In some embodiments, the total length of the antisense strand is 19-30 nucleotides, preferably the total length of the antisense strand is 19-27 nucleotides, and more preferably the total length of the antisense strand is 21, 22, 23, 24, 25, 26 or 27 nucleotides.
在一些实施方案中,正义链或正义核酸片段选自SEQ ID NO:1-198中任意一个或与其相差不超过3个核苷酸的序列。In some embodiments, the sense chain or sense nucleic acid fragment is selected from any one of SEQ ID NO: 1-198 or a sequence that differs therefrom by no more than 3 nucleotides.
在一些实施方案中,所述RNA抑制剂的正义链或正义核酸片段选自表1中的各序列相差一个、两个或三个核苷酸的序列,例如15、16、17、18、19或20个连续的核苷酸。In some embodiments, the sense strand or sense nucleic acid fragment of the RNA inhibitor is selected from sequences in Table 1 that differ by one, two, or three nucleotides, such as 15, 16, 17, 18, 19, or 20 consecutive nucleotides.
在一些实施方案中,反义链或反义核酸片段选自SEQ ID NO:199-413中任意一个或与其相差不超过3个核苷酸的至少15个连续核苷酸序列,例如15、16、17、18、19或20个连续的核苷酸。In some embodiments, the antisense strand or antisense nucleic acid fragment is selected from any one of SEQ ID NO: 199-413 or at least 15 consecutive nucleotide sequences that differ from it by no more than 3 nucleotides, for example, 15, 16, 17, 18, 19 or 20 consecutive nucleotides.
在一些实施方案中,所述RNA抑制剂的反义链或反义核酸片段选自表1中的各序列相差一个、两个或三个核苷酸的至少15个连续核苷酸序列,例如15、16、17、18、19或20个连续的核苷酸。In some embodiments, the antisense strand or antisense nucleic acid fragment of the RNA inhibitor is selected from at least 15 consecutive nucleotide sequences in which each sequence in Table 1 differs by one, two or three nucleotides, such as 15, 16, 17, 18, 19 or 20 consecutive nucleotides.
在一些实施方案中,其中所述正义链和反义链分别独立地任选包含1、2或3个核苷酸的3’或5’突出端。In some embodiments, the sense strand and antisense strand each independently optionally comprise a 3' or 5' overhang of 1, 2, or 3 nucleotides.
在一些实施方案中,其中所述正义链和反义链都具有长度为1-3个核苷酸的3’突出端,或所述正义链具有长度为1-3个核苷酸的3’或5’突出端,或所述反义链具有长度为1-3个核苷酸的3’或5’突出端。在一些实施方案中,本申请所述RNA抑制剂在其5’末端和3’末端附近具有特定的结构,如图2所示。In some embodiments, both the sense strand and the antisense strand have 3' overhangs of 1-3 nucleotides in length, or the sense strand has 3' or 5' overhangs of 1-3 nucleotides in length, or the antisense strand has 3' or 5' overhangs of 1-3 nucleotides in length. In some embodiments, the RNA inhibitor described in the present application has a specific structure near its 5' end and 3' end, as shown in Figure 2.
在某些实施方式中,其中,所述反义链包含裂解区,所述裂解区包含式(I)所示的核苷酸序列,In certain embodiments, the antisense strand comprises a cleavage region, and the cleavage region comprises a nucleotide sequence represented by formula (I),
式(I):(3’-5’)X2-Y-Z,Formula (I): (3'-5')X2-Y-Z,
所述裂解发生在X2和Y之间,所述X2是第二链最5'端核苷酸,所述Y和Z为5’延伸段的最3’端的两个核苷酸,所述Z为鸟嘌呤核苷酸(G)、鸟嘌呤核苷酸(G)的天然类似物、鸟嘌呤核苷酸(G)的非天然类似物、腺嘌呤核苷酸(A)、腺嘌呤核苷酸(A)的天然类似物或腺嘌呤核苷酸(A)的非天然类似物。The cleavage occurs between X2 and Y, wherein X2 is the 5'-most nucleotide of the second chain, Y and Z are the two 3'-most nucleotides of the 5' extension, and Z is a guanine nucleotide (G), a natural analog of a guanine nucleotide (G), a non-natural analog of a guanine nucleotide (G), an adenine nucleotide (A), a natural analog of adenine nucleotide (A), or a non-natural analog of adenine nucleotide (A).
在某些实施方式中,所述Z为鸟嘌呤核苷酸(G)、鸟嘌呤核苷酸(G)的天然类似物或鸟嘌呤核苷酸(G)的非天然类似物。In certain embodiments, Z is guanine nucleotide (G), a natural analog of guanine nucleotide (G), or a non-natural analog of guanine nucleotide (G).
在某些实施方式中,其中,所述X2为腺嘌呤核苷酸(A)、腺嘌呤核苷酸(A)的天然类似物、腺嘌呤核苷酸(A)的非天然类似物、尿嘧啶核苷酸(U)、尿嘧啶核苷酸(U)的天然类似物或尿嘧啶核苷酸(U)的非天然类似物。In certain embodiments, X2 is an adenine nucleotide (A), a natural analog of an adenine nucleotide (A), a non-natural analog of an adenine nucleotide (A), a uracil nucleotide (U), a natural analog of a uracil nucleotide (U), or a non-natural analog of a uracil nucleotide (U).
在某些实施方式中,其中,所述式(I)具有选自以下的序列(3’-5’):UUG、UAG、AUG、AAG、UUA、UAA、AUA、AAA、UCG、UGG、ACG、AGG、UCA、UGA、ACA和AGA,或其天然或非天然类似物。In certain embodiments, wherein the formula (I) has a sequence (3'-5') selected from the group consisting of UUG, UAG, AUG, AAG, UUA, UAA, AUA, AAA, UCG, UGG, ACG, AGG, UCA, UGA, ACA and AGA, or a natural or non-natural analogue thereof.
在某些实施方式中,所述Y为腺嘌呤核苷酸(A)、腺嘌呤核苷酸(A)的天然类似物、腺嘌呤核苷酸(A)的非天然类似物、尿嘧啶核苷酸(U)、尿嘧啶核苷酸(U)的天然类似物或尿嘧啶核苷酸(U)的非天然类似物。In certain embodiments, Y is an adenine nucleotide (A), a natural analog of an adenine nucleotide (A), a non-natural analog of an adenine nucleotide (A), a uracil nucleotide (U), a natural analog of a uracil nucleotide (U), or a non-natural analog of a uracil nucleotide (U).
在某些实施方式中,其中所述式(I)具有选自以下的序列(3’-5’):UUG、UAG、AUG、AAG、UUA、UAA、AUA和AAA。In certain embodiments, the formula (I) has a sequence (3'-5') selected from the group consisting of UUG, UAG, AUG, AAG, UUA, UAA, AUA and AAA.
在某些实施方式中,所述裂解区进一步包含核苷酸N1,所述N1为5’延伸段的最3’端起第三个核苷酸,所述裂解区包含式(II)所示的核苷酸序列,In certain embodiments, the cleavage region further comprises a nucleotide N1, wherein N1 is the third nucleotide from the 3' end of the 5' extension, and the cleavage region comprises a nucleotide sequence represented by formula (II),
式(II):(3’-5’)X2-Y-Z-N1。Formula (II): (3’-5’)X2-Y-Z-N1.
在某些实施方式中,所述裂解区进一步包含片段N,所述片段N包含至少一个核苷酸,其中所述片段N的最3’端的核苷酸为N1,所述裂解区包含式(III)所示的核苷酸序列,In certain embodiments, the cleavage region further comprises a fragment N, wherein the fragment N comprises at least one nucleotide, wherein the nucleotide at the 3' end of the fragment N is N1, and the cleavage region comprises the nucleotide sequence shown in formula (III),
式(III):(3’-5’)X2-Y-Z-N,Formula (III): (3’-5’)X2-Y-Z-N,
所述片段N的长度为1-10个核苷酸,优选1-5个核苷酸,更优选1个核苷酸。The length of the fragment N is 1-10 nucleotides, preferably 1-5 nucleotides, and more preferably 1 nucleotide.
在某些实施方式中,所述N为腺嘌呤核苷酸(A)、鸟嘌呤核苷酸(G)、胞嘧啶核苷酸(C)、尿嘧啶核苷酸(U)、它们的天然类似物或它们的非天然类似物;优选地,N1为胞嘧啶核苷酸(C)、胞嘧啶核苷酸(C)的天然类似物或胞嘧啶核苷酸(C)的非天然类似物。In certain embodiments, N is an adenine nucleotide (A), a guanine nucleotide (G), a cytosine nucleotide (C), a uracil nucleotide (U), their natural analogs or their non-natural analogs; preferably, N1 is a cytosine nucleotide (C), a natural analog of a cytosine nucleotide (C) or a non-natural analog of a cytosine nucleotide (C).
在某些实施方式中,其中所述式(III)具有选自以下的序列(3’-5’):AAGC和UAGC。In certain embodiments, the formula (III) has a sequence (3'-5') selected from the group consisting of: AAGC and UAGC.
在一些实施方案中,所述RNA抑制剂的正义链或正义核酸片段和反义链选自表1中的各序列相差一个、两个或三个核苷酸的至少15个连续核苷酸序列,例如15、16、17、18、19或20个连续的核苷酸。In some embodiments, the sense strand or sense nucleic acid fragment and antisense strand of the RNA inhibitor are selected from at least 15 consecutive nucleotide sequences in which each sequence in Table 1 differs by one, two or three nucleotides, for example, 15, 16, 17, 18, 19 or 20 consecutive nucleotides.
表1 siRNA正义链和反义链序列 Table 1 siRNA sense and antisense strand sequences
修饰的核苷酸Modified nucleotides
为了增强上述RNA抑制剂在体内的稳定性,在不影响其活性甚至增强其活性的情况下,可以对上述RNA抑制剂的正义链和反义链进行修饰,其中的核苷酸可以有修饰基团,可以整条链或者部分修饰。在某些实施方式中,其中所述正义链和/或反义链上的一个或多个核苷酸被修饰以形成修饰的核苷酸。In order to enhance the stability of the RNA inhibitor in vivo, the sense strand and antisense strand of the RNA inhibitor may be modified without affecting its activity or even enhancing its activity, wherein the nucleotides may have a modifying group, and the entire strand or a portion thereof may be modified. In certain embodiments, one or more nucleotides on the sense strand and/or antisense strand are modified to form modified nucleotides.
如本文所用,术语“核苷酸”指由五碳糖(核糖或脱氧核糖)、磷酸基团和碱基(天然或非天然碱基)组成,并且旨在包括未修饰(即天然的)核苷酸和修饰的核苷酸。在一些实施例中,核苷酸是未修饰的核糖核苷酸。在一些实施例中,核糖核苷酸是3'-核糖核苷酸。在一些实施例中,核糖核苷酸是5'-核糖核苷酸。在一些实施例中,修饰的或未修饰的核苷酸可以任选地进一步被修饰。As used herein, the term "nucleotide" refers to a pentose (ribose or deoxyribose), a phosphate group and a base (natural or non-natural base), and is intended to include unmodified (i.e., natural) nucleotides and modified nucleotides. In some embodiments, the nucleotide is an unmodified ribonucleotide. In some embodiments, the ribonucleotide is a 3'-ribonucleotide. In some embodiments, the ribonucleotide is a 5'-ribonucleotide. In some embodiments, modified or unmodified nucleotides may be optionally further modified.
天然核苷酸由天然碱基、天然核糖和磷酸组成。本文所使用的天然核苷酸是指腺嘌呤核糖核苷酸、腺嘌呤脱氧核糖核苷酸、鸟嘌呤核糖核苷酸、鸟嘌呤脱氧核糖核苷酸、胞嘧啶核糖核苷酸、胞嘧啶脱氧核糖核苷酸、尿嘧啶核糖核苷酸、胸腺嘧啶核糖核苷酸或胸腺嘧啶脱氧核糖核苷酸。“核糖核苷酸”是指在核苷酸的糖部分的2'位置上具有羟基的核苷酸。“脱氧核糖核苷”是指在该核苷酸的糖部分的2'位置上具有氢的核苷酸。Natural nucleotides are composed of natural bases, natural ribose and phosphate. As used herein, natural nucleotides refer to adenine ribonucleotides, adenine deoxyribonucleotides, guanine ribonucleotides, guanine deoxyribonucleotides, cytosine ribonucleotides, cytosine deoxyribonucleotides, uracil ribonucleotides, thymine ribonucleotides or thymine deoxyribonucleotides. "Ribonucleotides" refer to nucleotides with a hydroxyl group at the 2' position of the sugar portion of the nucleotide. "Deoxyribonucleosides" refer to nucleotides with a hydrogen group at the 2' position of the sugar portion of the nucleotide.
RNA的天然碱基包括A(腺嘌呤)、G(鸟嘌呤)、C(胞嘧啶)、U(尿嘧啶)和T(胸腺嘧啶)。The natural bases of RNA include A (adenine), G (guanine), C (cytosine), U (uracil), and T (thymine).
如本文所用,在单体(如核苷酸A、U、C、G和T等)前标记“d”表示单体被2’-脱氧修饰。As used herein, the mark "d" before a monomer (such as nucleotides A, U, C, G and T, etc.) indicates that the monomer is modified by 2'-deoxy.
如本文所用,在单体(如核苷酸A、U、C、G和T等)后标记“f”,表示单体被2’-脱氧-2’-氟修饰(2'-F修饰)。As used herein, the label "f" after a monomer (such as nucleotides A, U, C, G and T, etc.) indicates that the monomer is modified with 2'-deoxy-2'-fluoro (2'-F modification).
如本文所用,在单体(如核苷酸A、U、C、G和T等)前标记“GNA-”,表示单体被乙二醇核酸修饰(GNA修饰)。如本文所用,Tgn为GNA-T代号,表意等同。As used herein, "GNA-" is marked before a monomer (such as nucleotides A, U, C, G and T, etc.), indicating that the monomer is modified with ethylene glycol nucleic acid (GNA modification). As used herein, Tgn is the code for GNA-T, which is equivalent in meaning.
如本文所用,小写字母(a、u、c、g、t等)表示其相应大写字母(A、U、C、G和T等)代表的核苷酸被2’-O-甲基(2’-OMe)修饰。As used herein, lowercase letters (a, u, c, g, t, etc.) indicate that the nucleotide represented by its corresponding uppercase letter (A, U, C, G, and T, etc.) is modified by 2'-O-methyl (2'-OMe).
如本文所用,invAB修饰是指在核苷酸的5’端或者3’端键合连接反置的无碱基核苷酸。示例性的,被invAB修饰后的结构: As used herein, the invAB modification refers to the bonding of an inverted abasic nucleotide to the 5' or 3' end of the nucleotide. The structure modified by invAB:
如本文所用,M06修饰是指在单体(如核苷酸)的5’端或者3’端键合连接示例性的,被M06通过磷酸键修饰后的结构:在本发明中,(M06)是M06单体的残基。在一些实施例中,(M06)是通过键合连接到核苷酸的。As used herein, M06 modification refers to the bonding of a 5' or 3' end of a monomer (such as a nucleotide) to a For example, The structure after being modified by M06 through phosphate bonds: In the present invention, (M06) It is M06 monomer In some embodiments, (M06) is represented by Bonded to a nucleotide.
如本文所用,在单体(如核苷酸A、U、C、G和T等)之间标记“*”表示这两个单体之间通过硫代磷酸酯键(即硫代磷酸二酯键)连接,即被硫代磷酸酯(PS)修饰。As used herein, the mark "*" between monomers (such as nucleotides A, U, C, G and T, etc.) indicates that the two monomers are connected by a phosphorothioate bond (i.e., phosphorothioate diester bond), i.e., modified by phosphorothioate (PS).
如本文所用,在核苷酸(A、U、C、G和T等)之间无“*”标记表示两个核苷酸之间通过磷酸酯键(即磷酸二酯键)连接。As used herein, the absence of a "*" mark between nucleotides (A, U, C, G, T, etc.) indicates that the two nucleotides are linked by a phosphate bond (ie, phosphodiester bond).
示例性的,如“5'-Phosphorothioate-invAB”表示:(invAB)通过硫代磷酸酯键连接在单体的5’端。如“5'-Phosphorothioate-M06”表示:(M06)通过硫代磷酸酯键连接在单体的5’端。For example, "5'-Phosphorothioate-invAB" means: (invAB) is linked to the 5' end of the monomer via a phosphorothioate bond. For example, "5'-Phosphorothioate-M06" means: (M06) is linked to the 5' end of the monomer via a phosphorothioate bond.
本文所述小抑制核酸分子中所有的核苷酸都可以为天然的或未经修饰的核苷酸,也可以至少有一个核苷酸为修饰的核苷酸,所述修饰为如下修饰中的一种或其组合:All nucleotides in the small inhibitory nucleic acid molecule described herein may be natural or unmodified nucleotides, or at least one nucleotide may be a modified nucleotide, wherein the modification is one or a combination of the following modifications:
(1)对所述小抑制核酸分子的核苷酸序列中核苷酸的磷酸二酯键的修饰;(1) modifying the phosphodiester bonds of nucleotides in the nucleotide sequence of the small inhibitory nucleic acid molecule;
(2)对所述小抑制核酸分子的核苷酸序列中的核糖的2’-OH的修饰;(2) modification of the 2'-OH of the ribose in the nucleotide sequence of the small inhibitory nucleic acid molecule;
(3)对所述小抑制核酸分子的核苷酸序列中的碱基的修饰。(3) Modification of bases in the nucleotide sequence of the small inhibitory nucleic acid molecule.
本发明的化学修饰为本领域技术人员所公知,所述磷酸二酯键的修饰是指对磷酸二酯键中的氧进行修饰,包括硫代磷酸修饰和硼烷化磷酸盐修饰。两种修饰都能稳定siRNA结构,保持碱基配对的高特异性和高亲和力。The chemical modification of the present invention is well known to those skilled in the art, and the modification of the phosphodiester bond refers to the modification of the oxygen in the phosphodiester bond, including phosphorothioate modification and borylated phosphate modification. Both modifications can stabilize the siRNA structure and maintain high specificity and high affinity of base pairing.
所述核糖修饰是指对核苷酸戊糖中2’-OH的修饰,即,在核糖的羟基位置引入某些取代基,例如,2’-氟代修饰,2’-氧甲基修饰,2’-氧亚乙基甲氧基修饰,2,4’-二硝基苯酚修饰,锁核酸(LNA),2’-氨基修饰,2’-脱氧修饰。The ribose modification refers to the modification of the 2'-OH in the pentose of the nucleotide, that is, introducing certain substituents at the hydroxyl position of the ribose, for example, 2'-fluoro modification, 2'-oxymethyl modification, 2'-oxyethylenemethoxy modification, 2,4'-dinitrophenol modification, locked nucleic acid (LNA), 2'-amino modification, 2'-deoxy modification.
所述碱基修饰是指对核苷酸的碱基进行修饰,例如,5’-溴尿嘧啶修饰,5’-碘尿嘧啶修饰,N-甲基脲嘧啶修饰,2,6-二氨基嘌呤修饰。The base modification refers to modification of the base of the nucleotide, for example, 5'-bromouracil modification, 5'-iodouracil modification, N-methyluracil modification, and 2,6-diaminopurine modification.
在一些实施例中,其中所述核糖的修饰包括对2’-OH的氟取代和/或甲氧基取代。In some embodiments, the modification of the ribose comprises fluorine substitution and/or methoxy substitution of the 2'-OH.
在一些实施例中,其中所述核糖的修饰进一步包括被UNA、LNA或GNA修饰。In some embodiments, the modification of the ribose further comprises modification by UNA, LNA or GNA.
术语“LNA”表示包含C2*-C4*双基(桥)的二环核苷类似物,且被称作“锁定核酸”。它可以表示LNA单体,或者,当用在“LNA寡核苷酸”的上下文中时,LNA表示含有一个或多个这样的二环核苷酸类似物的寡核苷酸。在某些方面,二环核苷类似物是LNA核苷酸,且这些术语因此可以互换使用,且在这样的实施方案中,二者特征在于在核糖糖环的C2’和C4’之间的连接基团(诸如桥)的存在。The term "LNA" refers to a bicyclic nucleoside analogue comprising a C2*-C4* diradical (bridge), and is referred to as a "locked nucleic acid". It may refer to an LNA monomer, or, when used in the context of an "LNA oligonucleotide", LNA refers to an oligonucleotide containing one or more such bicyclic nucleotide analogues. In certain aspects, a bicyclic nucleoside analogue is an LNA nucleotide, and these terms may therefore be used interchangeably, and in such embodiments, both are characterized by the presence of a linking group (such as a bridge) between C2' and C4' of the ribose sugar ring.
UNA(unlocked nucleic acid)结构与RNA类似,但是缺少核糖环的C2与C3化学键,其结构如下所示:The structure of UNA (unlocked nucleic acid) is similar to RNA, but lacks the C2 and C3 chemical bonds of the ribose ring. Its structure is shown below:
其中B为碱基。 Where B is a base.
GNA(甘油核酸)是一种与DNA 或RNA 相似的化学物质,但组成物有所不同,并不存在于任何目前已知的自然界生物体内。GNA 含有一个无环的三碳的丙二醇(1,2-丙二醇)骨架,取代了DNA和RNA的(脱氧)核糖,构成化学上稳定的核酸的最简单结构。S-(GNA)结构如下所示。GNA (glycerol nucleic acid) is a chemical substance similar to DNA or RNA, but with a different composition and does not exist in any currently known natural organism. GNA contains an acyclic three-carbon propylene glycol (1,2-propanediol) backbone, which replaces the (deoxy)ribose of DNA and RNA to form the simplest chemically stable nucleic acid structure. The S-(GNA) structure is shown below.
其中B为碱基。 Where B is a base.
在某些实施方式中,所述的RNA抑制剂,其中所述RNA抑制剂中至少一个核苷酸为化学修饰的核苷酸。In certain embodiments, the RNA inhibitor, wherein at least one nucleotide in the RNA inhibitor is a chemically modified nucleotide.
在某些实施方式中,所述的RNA抑制剂,其中所述RNA抑制剂中所有核苷酸为化学修饰的核苷酸。In certain embodiments, the RNA inhibitor, wherein all nucleotides in the RNA inhibitor are chemically modified nucleotides.
在某些实施方式中,所述的RNA抑制剂,其中所述修饰包括以下一种或多种的组合:2’-OMe(2’-O-甲基)修饰、2’-F(2’-脱氧-2’-氟)修饰、2’-O-MOE(2’-O-甲氧基乙基)修饰、2’-脱氧(2’-d)修饰、5’-吗啉(5’-Mo)修饰、解锁核酸(UNA)修饰、乙二醇核酸(GNA)修饰、锁核酸(LNA)修饰、三环DNA(tcDNA)修饰、(S)-约束乙基双环核酸((S)-cEt-BNA)修饰、硫代磷酸酯(PS)修饰、二硫代磷酸酯(PS2)修饰、甲基膦酸酯(MP)修饰、甲氧基丙甲基膦酸酯(MOP)修饰、肽核酸(PNA)修饰、5’-(E)-乙烯基磷酸酯(VP)修饰(VP)、N6-甲基腺苷(m6A)修饰、5-甲基胞苷(m5C)修饰、3-甲基尿嘧啶核苷(m3U)修饰、5-甲基脲苷(m5U)修饰、假脲苷修饰、2-硫脲苷(s2U)修饰、丙炔尿嘧啶核苷(5-pU)修饰、将核苷酸的5’端或者3’端键合连接反置的无碱基核苷酸(invAB)修饰、将核苷酸替换为反置的无碱基核苷酸(invAb)修饰、将核苷酸替换为2,4-二氟甲苯基核糖核苷酸(rF)修饰或将核苷酸替换为(S)-甘油核酸修饰,优选的修饰为2'-OMe修饰、2'-F修饰、2'-脱氧修饰、VP修饰、5'-MP修饰、PS修饰、PS2修饰、MP修饰、MOP修饰、invAb修饰、invAB修饰。In certain embodiments, the RNA inhibitor, wherein the modification comprises a combination of one or more of the following: 2'-OMe (2'-O-methyl) modification, 2'-F (2'-deoxy-2'-fluoro) modification, 2'-O-MOE (2'-O-methoxyethyl) modification, 2'-deoxy (2'-d) modification, 5'-morpholine (5'-Mo) modification, unlocked nucleic acid (UNA) modification, glycol nucleic acid (GNA) modification, locked nucleic acid (LNA) modification, tricyclic DNA (tcDNA) modification, (S)-constrained ethyl bicyclic nucleic acid ((S)-cEt-BNA) modification, phosphorothioate (PS) modification, phosphorodithioate (PS2) modification, methylphosphonate (MP) modification, methoxypropylmethylphosphonate (MOP) modification, peptide nucleic acid (PNA) modification, 5'-(E)-vinyl phosphate (VP) modification. modification (VP), N6-methyladenosine (m6A), 5-methylcytidine (m5C), 3-methyluridine (m3U), 5-methylureidine (m5U), pseudouridine, 2-thioureidine (s2U), propyne uridine (5-pU), inverted abasic nucleotide (invAB) modification by bonding the 5' or 3' end of the nucleotide, inverted abasic nucleotide (invAb) modification, nucleotide replacement with an inverted abasic nucleotide (rF) modification, nucleotide replacement with a 2,4-difluoromethylphenylribonucleotide (rF) modification, or nucleotide replacement with a (S)-glycerol nucleic acid modification, preferably 2'-OMe modification, 2'-F modification, 2'-deoxy modification, VP modification, 5'-MP modification, PS modification, PS2 modification, MP modification, MOP modification, invAb modification, invAB modification.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,正义链第9位的核苷酸存在2’-F修饰。In certain embodiments, in the RNA inhibitor, when the length of the sense strand is 21 nt, counting from the 5' end, the 9th nucleotide of the sense strand is modified with 2'-F.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,正义链第10位的核苷酸存在2’-F修饰。In certain embodiments, in the RNA inhibitor, when the length of the sense strand is 21 nt, counting from the 5' end, the 10th nucleotide of the sense strand is modified with 2'-F.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,正义链第11位的核苷酸存在2’-F修饰。In certain embodiments, in the RNA inhibitor, when the length of the sense strand is 21 nt, counting from the 5' end, the 11th nucleotide of the sense strand is modified with 2'-F.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,正义链第9、10、11位的核苷酸存在2’-F修饰,其余为2’-OMe修饰。In certain embodiments, the RNA inhibitor, when the length of the sense strand is 21 nt, counting from the 5' end, the 9th, 10th, and 11th nucleotides of the sense strand are modified with 2'-F, and the rest are modified with 2'-OMe.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,其中正义链第1位核苷酸的5’端存在invAB修饰。In certain embodiments, the RNA inhibitor, when the length of the positive strand is 21 nt, counting starts from the 5' end, wherein the 5' end of the first nucleotide of the positive strand has an invAB modification.
在某些实施方式中,所述的RNA抑制剂,其中反置的无碱基核苷酸通过硫代磷酸酯与所述正义链第1位核苷酸的5’端相连。In certain embodiments, in the RNA inhibitor, the inverted abasic nucleotide is linked to the 5' end of the first nucleotide of the sense strand via a phosphorothioate.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第1位和第2位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, has a phosphorothioate linkage between the 1st and 2nd nucleotides of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第2位和三位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, has a phosphorothioate linkage between the second and third nucleotides of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第3位和第4位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, has a phosphorothioate linkage between the 3rd and 4th nucleotides of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从3’端开始计数,反义链第1位和第2位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 3' end, has a phosphorothioate linkage between the 1st and 2nd nucleotides of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和三位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,反义链第1位和第2位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the antisense strand, a phosphorothioate connection between the 2nd and 3rd nucleotides, and a phosphorothioate connection between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第2位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the second nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第3位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the 3rd nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第4位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the 4th nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第12位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the 12th nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第14位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the 14th nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第16位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, has a 2'-F modification at the 16th nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第2、3、4、12、14、16位的核苷酸存在2’-F修饰,其余为2’-OMe修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 21 nt in length, counting from the 5' end, the nucleotides at positions 2, 3, 4, 12, 14, and 16 of the antisense strand are modified with 2'-F, and the rest are modified with 2'-OMe.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为21nt时,从5’端开始计数,反义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和三位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,反义链第1位和第2位核苷酸之间存在硫代磷酸酯连接;并且反义链第2、3、4、12、14、16位的核苷酸存在2’-F修饰,其余为2’-OMe修饰。In certain embodiments, the RNA inhibitor, when the antisense chain is 21 nt in length, counting from the 5' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the antisense chain, a phosphorothioate connection between the 2nd and 3rd nucleotides, and a phosphorothioate connection between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the antisense chain; and the nucleotides at positions 2, 3, 4, 12, 14, and 16 of the antisense chain are 2'-F modified, and the rest are 2'-OMe modified.
在某些实施方式中,所述的RNA抑制剂,In certain embodiments, the RNA inhibitor,
a)其中当正义链长度为21nt时,正义链包括以下修饰:从5’端开始计数,第9、10、11位的核苷酸存在2’-F修饰,其余为2’-OMe修饰,从5’端开始计数,其中第1位核苷酸的5’端存在invAB修饰,a) When the length of the sense strand is 21 nt, the sense strand includes the following modifications: counting from the 5' end, the 9th, 10th, and 11th nucleotides are modified with 2'-F, and the rest are modified with 2'-OMe; counting from the 5' end, the 5' end of the 1st nucleotide is modified with invAB,
b)当反义链长度为21nt时,反义链包括以下修饰:从5’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和三位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接;并且第2、3、4、12、14、16位的核苷酸存在2’-F修饰,其余为2’-OMe修饰。b) When the antisense strand is 21 nt in length, the antisense strand includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, there is a phosphorothioate linkage between the 2nd and 3rd nucleotides, and there is a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides, and the rest are 2'-OMe modified.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,第18位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the length of the positive strand is 21 nt, counting from the 5' end, the 18th nucleotide has a 2'-F modification.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,第9、10、11、18位的核苷酸存在2’-F修饰,其余为2’-OMe修饰。In certain embodiments, the RNA inhibitor, when the length of the positive strand is 21 nt, counting from the 5' end, the 9th, 10th, 11th, and 18th nucleotides are modified with 2'-F, and the rest are modified with 2'-OMe.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the length of the positive strand is 21 nt, counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,第2位和第3位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the length of the positive strand is 21 nt, counting from the 5' end, there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the length of the positive strand is 21 nt, counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从3’端开始计数,第2位和第3位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the length of the positive strand is 21 nt, counting from the 3' end, there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
在某些实施方式中,所述的RNA抑制剂,其中当正义链长度为21nt时,从5’端开始计数,正义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接,正义链第9、10、11、18位的核苷酸存在2’-F修饰,其余为2’-OMe修饰;从3’端开始计数,正义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,正义链第2位和第3位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, when the length of the sense chain is 21 nt, counting from the 5' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the sense chain, there is a phosphorothioate connection between the 2nd and 3rd nucleotides, the 9th, 10th, 11th, and 18th nucleotides of the sense chain are 2'-F modified, and the rest are 2'-OMe modified; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the sense chain, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides of the sense chain.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从5’端开始计数,反义链第1位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 26 nt in length, counting from the 5' end, has a 2'-F modification at the first nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从5’端开始计数,反义链第2位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 26 nt in length, counting from the 5' end, has a 2'-F modification at the second nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从5’端开始计数,反义链第5位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 26 nt in length, counting from the 5' end, has a 2'-F modification at the 5th nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从5’端开始计数,反义链第9位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 26 nt in length, counting from the 5' end, has a 2'-F modification at the 9th nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从5’端开始计数,反义链第17位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 26 nt in length, counting from the 5' end, has a 2'-F modification at the 17th nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从5’端开始计数,反义链第19位的核苷酸存在2’-F修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 26 nt in length, counting from the 5' end, has a 2'-F modification at the 19th nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从5’端开始计数,反义链第1、2、5、9、17、19位的核苷酸存在2’-F修饰,,其余为2’-OMe修饰。In certain embodiments, the RNA inhibitor, when the antisense strand is 26 nt in length, counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense strand are modified with 2'-F, and the rest are modified with 2'-OMe.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从5’端开始计数,第4和第5核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, wherein when the antisense strand is 26 nt in length, counting from the 5' end, there is a phosphorothioate linkage between the 4th and 5th nucleotides.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, wherein when the antisense strand is 26 nt in length, counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides.
在某些实施方式中,所述的RNA抑制剂,其中当反义链长度为26nt时,从3’端开始计数,第2位和第3位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, the RNA inhibitor, wherein when the antisense strand is 26 nt in length, counting from the 3' end, there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
在某些实施方式中,所述的RNA抑制剂,当反义链长度为26nt时,从5’端开始计数,反义链第1、2、5、9、17、19位的核苷酸存在2’-F修饰,其余为2’-OMe修饰,第4和第5核苷酸之间存在硫代磷酸酯连接;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接。In certain embodiments, when the antisense strand of the RNA inhibitor is 26 nt in length, counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense strand are 2'-F modified, and the rest are 2'-OMe modified, and there is a phosphorothioate connection between the 4th and 5th nucleotides; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides.
在某些实施方式中,所述的RNA抑制剂,其中In certain embodiments, the RNA inhibitor, wherein
a)其中当正义链长度为21nt时,从5’端开始计数,正义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接,正义链第9、10、11、18位的核苷酸存在2’-F修饰,其余为2’-OMe修饰;从3’端开始计数,正义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,正义链第2位和第3位核苷酸之间存在硫代磷酸酯连接;a) When the length of the sense strand is 21 nt, counting from the 5' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the sense strand, there is a phosphorothioate connection between the 2nd and 3rd nucleotides, the 9th, 10th, 11th, and 18th nucleotides of the sense strand are 2'-F modified, and the rest are 2'-OMe modified; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides of the sense strand, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides of the sense strand;
b)当反义链长度为26nt时,从5’端开始计数,反义链第1、2、5、9、17、19位的核苷酸存在2’-F修饰,其余为2’-OMe修饰,第4和第5核苷酸之间存在硫代磷酸酯连接;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接。b) When the antisense chain is 26 nt in length, counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense chain are modified with 2'-F, and the rest are modified with 2'-OMe, and there is a phosphorothioate connection between the 4th and 5th nucleotides; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides.
在某些实施方式中,所述的RNA抑制剂,其中反义链的5'-端包括磷酸盐或磷酸盐模拟物。In certain embodiments, the RNA inhibitor, wherein the 5'-end of the antisense strand comprises a phosphate or a phosphate mimetic.
在某些实施方式中,所述的RNA抑制剂,其中磷酸盐模拟物包括5’-(E)-乙烯基膦酸酯、5’-甲基膦酸酯、(S)-5’-C-甲基类似物和5’-硫代磷酸酯(5’-PS)。In certain embodiments, the RNA inhibitor, wherein the phosphate mimetic comprises 5'-(E)-vinylphosphonate, 5'-methylphosphonate, (S)-5'-C-methyl analog and 5'-phosphorothioate (5'-PS).
在某些实施方式中,所述的RNA抑制剂,其中反义链的5'-端包括(M06): In certain embodiments, the RNA inhibitor, wherein the 5'-end of the antisense strand comprises (M06):
在某些实施方式中,所述的RNA抑制剂,其中(M06)通过磷酸酯或者硫代磷酸酯键与反义链5'-端相连。In certain embodiments, the RNA inhibitor, wherein (M06) is linked to the 5'-end of the antisense strand via a phosphate or phosphorothioate bond.
在某些实施方式中,所述的RNA抑制剂,其中反义链的第一个核苷酸的5'-端存在invAB修饰。In certain embodiments, the RNA inhibitor has an invAB modification at the 5'-end of the first nucleotide of the antisense strand.
在某些实施方式中,所述的RNA抑制剂,其中反置的无碱基核苷酸通过硫代磷酸酯与所述反义链第1位核苷酸的5’端相连。In certain embodiments, in the RNA inhibitor, the inverted abasic nucleotide is linked to the 5' end of the first nucleotide of the antisense strand via a phosphorothioate.
修饰后的序列如表2所示。The modified sequences are shown in Table 2.
表2修饰双链体 Table 2 Modified duplexes
其中,小写字母“g”、“c、“a”和“u”表示2’-甲氧基修饰的核苷酸;大写字母“Gf”、“Cf”、“Af”和“Uf”表示2’-氟代修饰的核苷酸;*表示与*左右相邻的两个核苷酸之间为硫代磷酸酯基连接。(D02)*、(InvAB)*、(M06)*、*(D02)、*(InvAB)、*(M06)代表D02、invAB、M06通过硫代磷酸酯与核苷酸相连。invAB指在核苷酸的5’端或者3’端键合连接反置的无碱基核苷酸。(M06)是指在单体(如核苷酸)的5’端或者3’端键合连接如以下所述的结构:Among them, lowercase letters "g", "c", "a" and "u" represent 2'-methoxy modified nucleotides; uppercase letters "Gf", "Cf", "Af" and "Uf" represent 2'-fluoro modified nucleotides; * indicates that the two adjacent nucleotides to the left and right of * are connected by thiophosphate groups. (D02)*, (InvAB)*, (M06)*, *(D02), *(InvAB), *(M06) represent that D02, invAB, M06 are connected to nucleotides through thiophosphates. invAB refers to an inverted abasic nucleotide bonded to the 5' end or 3' end of the nucleotide. (M06) refers to a structure bonded to the 5' end or 3' end of a monomer (such as a nucleotide) as described below:
(M06)其可以通过磷酸与核苷酸连接,也可以通过硫代磷酸与核苷酸连接。(M06) It can be linked to the nucleotide via phosphate or via thiophosphate.
[D02]指在5’端或者3’端键合连接如以下所述的结构:[D02] refers to a structure bonded to the 5' or 3' end as follows:
其可以通过磷酸与核苷酸连接,也可以通过硫代磷酸与核苷酸连接。以5’-[D02]*A-3’为例,在某些实施方式中,其结构为: It can be linked to the nucleotide via phosphate or thiophosphate. Taking 5'-[D02]*A-3' as an example, in some embodiments, its structure is:
与配体偶联的RNA抑制剂Ligand-coupled RNA inhibitors
本申请RNA抑制剂的另一方面涉及将干扰核酸与配体偶联的方式,以增强RNAi剂的稳定性、活性、细胞分布或细胞摄取。Another aspect of the RNA inhibitors of the present application relates to the manner in which the interfering nucleic acid is coupled to a ligand to enhance the stability, activity, cellular distribution or cellular uptake of the RNAi agent.
在某些实施方式中,通过引入靶组织受体的配体,以改变RNA抑制剂的分布、靶向或稳定性。例如,与不存在配体的物种相比,专属性的配体可以提供针对所选靶(例如分子、细胞或细胞类型、区室(例如细胞或器官区室、身体组织、器官或区域))的增强的亲和力。In certain embodiments, the distribution, targeting or stability of the RNA inhibitor is altered by introducing a ligand for a target tissue receptor. For example, a specific ligand can provide enhanced affinity for a selected target (e.g., a molecule, cell or cell type, compartment (e.g., cell or organ compartment, body tissue, organ or region)) compared to a species in which the ligand is not present.
配体可以包括天然存在的物质,如蛋白质(例如人血清白蛋白(HSA)、低密度脂蛋白(LDL)或球蛋白);碳水化合物(例如葡聚糖、茁霉多糖、壳多糖、壳聚糖、菊糖、环糊精、N-乙酰葡糖胺、N-乙酰半乳糖胺或透明质酸);或脂质。配体也可以是重组或合成分子,如合成聚合物,例如合成的聚氨基酸。The ligand can include naturally occurring substances, such as proteins (e.g., human serum albumin (HSA), low-density lipoprotein (LDL) or globulin); carbohydrates (e.g., dextran, pullulan, chitin, chitosan, inulin, cyclodextrin, N-acetylglucosamine, N-acetylgalactosamine or hyaluronic acid); or lipids. The ligand can also be a recombinant or synthetic molecule, such as a synthetic polymer, for example a synthetic polyamino acid.
配体也可以包括靶向基团,例如与指定的细胞类型如肾细胞结合的细胞或组织靶向剂,例如凝集素、糖蛋白、脂质或蛋白质,例如抗体。靶向基团可以是促甲状腺激素、促黑素、凝集素、糖蛋白、表面活性蛋白质A、黏蛋白碳水化合物、多价乳糖、多价半乳糖、N-乙酰基-半乳糖胺、N-乙酰基-葡糖胺多价甘露糖、多价岩藻糖、糖基化聚氨基酸、多价半乳糖、转铁蛋白、双磷酸盐、聚谷氨酸、聚天冬氨酸、脂质、胆固醇、类固醇、胆酸、叶酸、维生素B12、维生素A、生物素、或RGD肽或RGD肽模拟物。在某些实施方式中,该配体为多价半乳糖,例如,N-乙酰基-半乳糖胺。The ligand can also include a targeting group, such as a cell or tissue targeting agent that is combined with a specified cell type such as a kidney cell, such as a lectin, a glycoprotein, a lipid or a protein, such as an antibody. The targeting group can be thyrotropin, melanocyte stimulating hormone, a lectin, a glycoprotein, a surfactant protein A, a mucin carbohydrate, a multivalent lactose, a multivalent galactose, N-acetyl-galactosamine, N-acetyl-glucosamine multivalent mannose, a multivalent fucose, a glycosylated polyamino acid, a multivalent galactose, transferrin, a bisphosphonate, polyglutamic acid, polyaspartic acid, a lipid, cholesterol, a steroid, bile acid, folic acid, vitamin B12, vitamin A, biotin or an RGD peptide or an RGD peptide mimetic. In some embodiments, the ligand is a multivalent galactose, such as N-acetyl-galactosamine.
本申请RNA抑制剂所包含的正义链和反义链可以通过固相合成的公知技术方便且常规地制备。可另外地或替代地使用本领域中已知的用于这类合成的任何其他方法,如液相合成或发酵。使用相似的技术来制备其他寡核苷酸(如硫代磷酸酯和烷基化衍生物)也是已知的。The sense strand and antisense strand comprised by the present application's RNA inhibitor can be conveniently and routinely prepared by the known techniques of solid phase synthesis. Any other method known in the art for this type of synthesis, such as liquid phase synthesis or fermentation, can be used additionally or alternatively. It is also known to use similar techniques to prepare other oligonucleotides (such as thiophosphates and alkylated derivatives).
在某些实施方式中,除了可商购以及寡核苷酸合成中常规使用的标准核苷亚磷酰胺单体以及非标准核苷亚磷酰胺单体之外,本申请的寡核苷酸或连接的核苷酸可以通过自动合成仪使用衍生自配体-核苷亚磷酰胺单体的亚磷酰胺法合成。In certain embodiments, in addition to standard nucleoside phosphoramidite monomers and non-standard nucleoside phosphoramidite monomers that are commercially available and routinely used in oligonucleotide synthesis, the oligonucleotides or linked nucleotides of the present application can be synthesized by an automated synthesizer using a phosphoramidite method derived from ligand-nucleoside phosphoramidite monomers.
在某些实施方式中,本发明所述配体缀合的方式通过配体结构偶联于反义链的5’末端和/或3’末端,和/或正义链的5’末端和/或3’末端。In certain embodiments, the ligand conjugation method of the present invention is to couple the ligand structure to the 5' end and/or 3' end of the antisense chain, and/or the 5' end and/or 3' end of the sense chain.
例如,所述配体结构可以偶联于正义链的5’末端和/或3’末端;或所述配体结构可以偶联于反义链的5’末端且所述配体结构偶联于正义链的3’末端;或所述配体结构可以偶联于反义链的3’末端,且所述配体偶联于正义链的5’末端;或所述配体结构偶联于正义链的5’末端和3’末端;或所述配体结构偶联于正义链的3’末端。For example, the ligand structure can be coupled to the 5’ end and/or the 3’ end of the sense strand; or the ligand structure can be coupled to the 5’ end of the antisense strand and the ligand structure is coupled to the 3’ end of the sense strand; or the ligand structure can be coupled to the 3’ end of the antisense strand and the ligand is coupled to the 5’ end of the sense strand; or the ligand structure is coupled to the 5’ end and 3’ end of the sense strand; or the ligand structure is coupled to the 3’ end of the sense strand.
在某些实施方式中,本申请所述的配体为[L96],如以下结构式所示: In certain embodiments, the ligand described in the present application is [L96], as shown in the following structural formula:
在某些实施方式中,本申请所述的配体为[D02],如以下结构式所示: In certain embodiments, the ligand described in the present application is [D02], as shown in the following structural formula:
在本发明中,[D02]表示D02单体的残基。在某些实施方式中,D02单体结构为 In the present invention, [D02] represents the residue of D02 monomer. In certain embodiments, the D02 monomer structure is
在某些实施方式中,[D02]是通过键合连接到核苷酸的。In certain embodiments, [D02] is Bonded to a nucleotide.
以5’-[D02]*A-3’为例,在某些实施方式中,其结构为: Taking 5'-[D02]*A-3' as an example, in certain embodiments, its structure is:
药物组合物Pharmaceutical composition
本申请也包括包含本申请的RNA抑制剂或其药学上可接受的盐的药物组合物。The present application also includes a pharmaceutical composition comprising the RNA inhibitor of the present application or a pharmaceutically acceptable salt thereof.
在一个实施方式中,本文提供包含本文所述的RNA抑制剂和药学上可接受的药用辅料的药物组合物。In one embodiment, provided herein is a pharmaceutical composition comprising an RNA inhibitor as described herein and a pharmaceutically acceptable pharmaceutical excipient.
包含RNA抑制剂的药物组合物可用于预防和/或治疗IGF-1R相关障碍,例如,甲状腺眼病、骨性关节炎、神经性疼痛。这类药物组合物依据递送模式配制。一个实例方案为配制用于以肠胃外递送全身性施用的组合物,例如,皮下(SC)、肌内(IM)或静脉内(IV)递送。本申请的药物组合物可以足以抑制IGF-1R基因表达的剂量施用。Pharmaceutical compositions comprising RNA inhibitors can be used to prevent and/or treat IGF-1R related disorders, e.g., thyroid eye disease, osteoarthritis, neuropathic pain. Such pharmaceutical compositions are formulated according to the mode of delivery. An example scheme is a composition formulated for systemic administration with parenteral delivery, e.g., subcutaneous (SC), intramuscular (IM) or intravenous (IV) delivery. The pharmaceutical compositions of the present application can be administered at a dose sufficient to inhibit IGF-1R gene expression.
药学上可接受的“辅料”或“赋形剂”是用于递送一种或多种核酸至动物的药学上可接受的溶剂、悬浮剂或任何其他药学上惰性的媒介物。赋形剂可为液体或固体,并考虑计划的施用方式进行选择,以在与核酸及给定药物组合物中的其他组分组合时提供所需的体积、稠度等。RNA抑制剂可以靶向特定组织(例如,肝细胞)的方式递送。A pharmaceutically acceptable "excipient" or "excipient" is a pharmaceutically acceptable solvent, suspending agent, or any other pharmaceutically inert vehicle for delivering one or more nucleic acids to an animal. Excipients can be liquid or solid and are selected taking into account the planned mode of administration to provide the desired volume, consistency, etc. when combined with the nucleic acid and other components in a given pharmaceutical composition. RNA inhibitors can be delivered in a manner that targets specific tissues (e.g., hepatocytes).
在某些实施方式中,所述的药物组合物,其还包含递送媒介物(如纳米颗粒、树状聚合物、聚合物、脂质体或阳离子递送系统)。In certain embodiments, the pharmaceutical composition further comprises a delivery vehicle (eg, nanoparticles, dendrimers, polymers, liposomes, or cationic delivery systems).
在某些实施方式中,其中所述递送媒介物包括脂质体。In certain embodiments, the delivery vehicle comprises a liposome.
在某些实施方式中,其中所述递送媒介物包括纳米脂质,其能够与核酸分子形成脂质体-核酸纳米颗粒。In certain embodiments, the delivery vehicle comprises nanolipids that are capable of forming liposome-nucleic acid nanoparticles with nucleic acid molecules.
用途use
另一方面,本申请提供前述的抑制IGF-1R基因表达的RNA抑制剂或其药学上可接受的盐与前述的药物组合物在制备药物中的用途,所述药物用于预防或治疗疾病或病理或者降低疾病或病理的风险。On the other hand, the present application provides the use of the aforementioned RNA inhibitor for inhibiting IGF-1R gene expression or a pharmaceutically acceptable salt thereof and the aforementioned pharmaceutical composition in the preparation of a drug for preventing or treating a disease or pathology or reducing the risk of a disease or pathology.
在某些实施方式中,其中所述疾病或病理包括与IGF-1R水平正常或水平升高相关的疾病或病理。In certain embodiments, the disease or pathology comprises a disease or pathology associated with normal or elevated levels of IGF-1R.
在某些实施方式中,所述所述疾病或病理包括甲状腺眼病,骨性关节炎,神经性疼痛。In certain embodiments, the disease or pathology comprises thyroid eye disease, osteoarthritis, neuropathic pain.
另一方面,本申请提供一种预防或治疗疾病、病症或综合征的方法,所述方法包括向有此需要的受试者施用有效量的包含前述抑制IGF-1R基因表达的RNA抑制剂、其药学上可接受的盐或前述的药物组合物。On the other hand, the present application provides a method for preventing or treating a disease, condition or syndrome, comprising administering to a subject in need thereof an effective amount of the aforementioned RNA inhibitor for inhibiting IGF-1R gene expression, a pharmaceutically acceptable salt thereof or the aforementioned pharmaceutical composition.
在某些实施方式中,其中所述抑制IGF-1R基因表达的RNA抑制剂、其药学上可接受的盐或所述药物组合物以眶内注射方式、关节内注射方式、鞘内注射方式、皮下方式、静脉内方式、口服、经直肠或腹膜内施加途径向受试者施用。In certain embodiments, the RNA inhibitor that inhibits IGF-1R gene expression, its pharmaceutically acceptable salt or the pharmaceutical composition is administered to the subject by intraorbital injection, intraarticular injection, intrathecal injection, subcutaneous injection, intravenous injection, oral administration, rectal administration or intraperitoneal administration.
在某些实施方式中,所述的方法包括向有需要的受试者的局部或者病灶区域组织施用。In certain embodiments, the method comprises administering to a local or focal area of tissue in a subject in need thereof.
在某些实施方式中,其中需要的受试者的局部或者病灶区域组织包括眼部组织,关节组织,中枢神经组织,外周神经组织,肿瘤,肝组织,肾组织,肌肉组织,或脂肪组织。In certain embodiments, the local or focal area tissue of the subject in need thereof includes eye tissue, joint tissue, central nervous tissue, peripheral nervous tissue, tumor, liver tissue, kidney tissue, muscle tissue, or adipose tissue.
在某些实施方式中,所述眼组织为视神经、小梁网、近管组织、神经节、巩膜外静脉、施累姆氏管或眼部外周组织,优选的,所述的关节组织包含软骨组织,关节结缔组织,骨组织;优选的,所述的中枢神经组织包含脊髓组织,脑组织;优选的,所述的外周神经组织包含关节内神经组织,肌肉神经组织;优选的,脂肪组织包含皮下脂肪组织,内脏脂肪组织。In certain embodiments, the eye tissue is an optic nerve, trabecular meshwork, proximal canal tissue, ganglion, episcleral vein, Schlemm's canal or peripheral eye tissue. Preferably, the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue; preferably, the central nervous tissue comprises spinal cord tissue and brain tissue; preferably, the peripheral nervous tissue comprises intra-articular nervous tissue and muscle nervous tissue; preferably, the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
在某些实施方式中,所述眼组织为视网膜神经节、内皮细胞、眼外周肌肉或眼外周脂肪。In certain embodiments, the ocular tissue is retinal ganglion, endothelial cell, periocular muscle or periocular fat.
另一方面,本申请提供一种用于抑制细胞、组织或受试者中IGF-1R mRNA或基因表达的方法,其包括向有此需要的受试者施用有效量的包含前述抑制IGF-1R基因表达的RNA抑制剂、其药学上可接受的盐或前述的药物组合物。On the other hand, the present application provides a method for inhibiting IGF-1R mRNA or gene expression in cells, tissues or subjects, which comprises administering to a subject in need thereof an effective amount of the aforementioned RNA inhibitor that inhibits IGF-1R gene expression, a pharmaceutically acceptable salt thereof or the aforementioned pharmaceutical composition.
适合使用本申请方法处理的细胞可为任何基因表达IGF-1R基因的细胞。适合用于本申请方法的细胞可为哺乳动物细胞,当与基因表达IGF-1R基因的细胞接触时,RNAi剂抑制IGF-1R基因(例如,人类、灵长类、非灵长类或大鼠IGF-1R基因)的基因表达至少约50%,例如可通过PCR或基于分支DNA(bDNA)的方法,或由基于蛋白质的方法,如免疫荧光分析法,蛋白质印迹法或流式细胞分析技术测定的。Cells suitable for treatment using the methods of the present application can be any cells that genetically express the IGF-1R gene. Cells suitable for use in the methods of the present application can be mammalian cells, and when contacted with cells that genetically express the IGF-1R gene, the RNAi agent inhibits the gene expression of the IGF-1R gene (e.g., human, primate, non-primate or rat IGF-1R gene) by at least about 50%, for example, as determined by PCR or branched DNA (bDNA)-based methods, or by protein-based methods, such as immunofluorescence analysis, Western blotting or flow cytometry.
本文所用术语“抑制”可与“减少”、“降低”、“沉默”、“下调”、“压制”及其他类似术语交换使用,且包括任何抑制水平。IGF-1R基因的表达可依据与IGF-1R基因表达相关的任何变量的水平或水平变化来评价,例如,IGF-1R mRNA水平或IGF-1R蛋白水平。这一水平可在单个细胞中或细胞群中(包括例如,源自受试者的样品)中分析。可通过与IGF-1R基因表达相关的一种或多种变量与对照水平比较的绝对或相对水平的下降来评价抑制。对照水平可为本领域上采用的任何类型的对照水平,例如,给药前基线水平或从未处理或接受对照(如例如,仅缓冲剂对照或无活性剂对照)处理的类似受试者、细胞或样本测得的水平。As used herein, the term "inhibit" is used interchangeably with "reduce," "reduced," "silence," "downregulate," "suppress," and other similar terms, and includes any level of inhibition. Expression of the IGF-1R gene can be evaluated based on the level or change in level of any variable associated with IGF-1R gene expression, for example, IGF-1R mRNA level or IGF-1R protein level. This level can be analyzed in a single cell or in a population of cells (including, for example, a sample from a subject). Inhibition can be evaluated by a decrease in the absolute or relative level of one or more variables associated with IGF-1R gene expression compared to a control level. The control level can be any type of control level used in the art, for example, a baseline level before administration or a level measured from a similar subject, cell, or sample that has not been treated or has been treated with a control (such as, for example, a buffer-only control or a no active agent control).
IGF-1R基因表达的抑制可通过其中IGF-1R基因被转录且已处理(例如,通过一个或多个细胞与本申请的RNA抑制剂接触,或通过施用本申请的RNA抑制剂于其中存在该细胞的受试者)使得抑制IGF-1R基因表达的第一细胞或细胞群(这类细胞可例如存在于源自受试者的样品中)基因表达的mRNA量与基本上与该第一细胞或细胞群相同但未如此处理的第二细胞或细胞群(未用RNA抑制剂处理或未用靶向目的基因的RNA抑制剂处理的对照细胞)相比的降低来表现。在优选的实施方式中,抑制通过实施例提供的方法使用siRNA合适的浓度在高基因表达IGF-1R的细胞系中评价,并将被干预细胞中的mRNA水平表示为非干预对照细胞中mRNA水平的百分比。Inhibition of IGF-1R gene expression can be demonstrated by a reduction in the amount of mRNA expressed by a first cell or cell population (such cells may, for example, be present in a sample derived from a subject) in which the IGF-1R gene is transcribed and has been treated (e.g., by contacting one or more cells with the RNA inhibitor of the present application, or by administering the RNA inhibitor of the present application to a subject in which the cells are present) so that the IGF-1R gene expression is inhibited, compared to a second cell or cell population that is substantially the same as the first cell or cell population but has not been treated in this way (control cells that have not been treated with the RNA inhibitor or have not been treated with the RNA inhibitor targeting the gene of interest). In a preferred embodiment, inhibition is evaluated in a cell line with high gene expression of IGF-1R using an appropriate concentration of siRNA by the method provided in the Examples, and the mRNA level in the intervened cells is expressed as a percentage of the mRNA level in the non-intervention control cells.
在其他实施方式中,IGF-1R基因表达的抑制可通过功能上与IGF-1R基因表达相关的参数的降低来评价,例如,受试者血液或血清中的IGF-1R蛋白水平。IGF-1R基因沉默可在任何基因表达IGF-1R的细胞(内源性或来自基因表达构建体的外源性)中且通过本领域已知的任何分析法测定。In other embodiments, inhibition of IGF-1R gene expression can be assessed by a decrease in a parameter functionally associated with IGF-1R gene expression, e.g., IGF-1R protein levels in the blood or serum of a subject. IGF-1R gene silencing can be measured in any cell that genetically expresses IGF-1R (either endogenous or exogenous from a gene expression construct) and by any assay known in the art.
IGF-1R蛋白质表达的抑制可由细胞或细胞群或受试者样品基因表达的IGF-1R蛋白水平(例如,源自受试者的血液样品中的蛋白质水平)的降低来表现。如上所述,对于mRNA抑制的评价,处理细胞或细胞群的蛋白质表达水平的抑制可类似地表示为对照细胞或细胞群的蛋白质水平的百分比,或受试者样品(例如,血液或其衍生的血清)中的蛋白质水平的变化。Inhibition of IGF-1R protein expression can be represented by a decrease in the level of IGF-1R protein expressed by a cell or cell population or a sample of a subject (e.g., the level of protein in a blood sample derived from a subject). As described above, for evaluation of mRNA inhibition, inhibition of protein expression levels in treated cells or cell populations can be similarly expressed as a percentage of the protein level in a control cell or cell population, or a change in protein levels in a sample of a subject (e.g., blood or serum derived therefrom).
可用于评价IGF-1R基因抑制的对照组细胞、细胞群或受试者样品包括未与本申请RNAi剂接触的细胞、细胞群或受试者样品。例如,对照细胞、细胞群或受试者样品可源自于用RNAi剂治疗前的单个受试者(例如,人类或动物受试者)或适当匹配的群体对照。Control cells, cell groups or subject samples that can be used to evaluate IGF-1R gene inhibition include cells, cell groups or subject samples that have not been contacted with the RNAi agent of the present application. For example, control cells, cell groups or subject samples can be derived from a single subject (e.g., a human or animal subject) or an appropriately matched population control before treatment with an RNAi agent.
细胞或细胞群表达的IGF-1R水平可采用本领域已知用于评价mRNA基因表达的任何方法测定。例如,qRT-PCR,评价基因表达的降低。可通过本领域中已知的任何方法,例如,ELISA,评价蛋白质产生的降低。在某些实施方式中,穿刺肝脏活检样品用作监测IGF-1R基因或蛋白质基因表达降低的组织材料。其他实施方式中,血液样品用作监测IGF-1R蛋白质表达降低的受试者样品。The level of IGF-1R expressed by a cell or cell population can be determined by any method known in the art for evaluating mRNA gene expression. For example, qRT-PCR evaluates the reduction of gene expression. The reduction of protein production can be evaluated by any method known in the art, for example, ELISA. In certain embodiments, a puncture liver biopsy sample is used as a tissue material for monitoring the reduction of IGF-1R gene or protein gene expression. In other embodiments, a blood sample is used as a subject sample for monitoring the reduction of IGF-1R protein expression.
不欲被任何理论所限,下文中的实施例仅仅是为了阐释本申请的融合蛋白、制备方法和用途等,而不用于限制本申请发明的范围。Without intending to be bound by any theory, the following examples are merely intended to illustrate the fusion protein, preparation method and use of the present application, and are not intended to limit the scope of the present invention.
本申请提供以下实施方式:This application provides the following implementation modes:
1.一种抑制胰岛素样生长因子1受体(IGF-1R)基因表达的RNA抑制剂,包含反义链,所述反义链与编码IGF-1R的mRNA(SEQ ID NO:828)中连续的至少15个核苷酸形成互补区域,所述互补区域具有0、1、2、3、4或5个错配,优选的所述互补区域长度为15-30个核苷酸对,更优选的为17-23个核苷酸对。1. An RNA inhibitor for inhibiting insulin-like growth factor 1 receptor (IGF-1R) gene expression, comprising an antisense chain, wherein the antisense chain forms a complementary region with at least 15 consecutive nucleotides in an mRNA encoding IGF-1R (SEQ ID NO: 828), wherein the complementary region has 0, 1, 2, 3, 4 or 5 mismatches, and preferably the complementary region is 15-30 nucleotide pairs in length, and more preferably 17-23 nucleotide pairs in length.
2.根据实施方式1所述的RNA抑制剂,其中所述反义链和编码IGF-1R的mRNA(SEQ ID NO:828)中从5’端开始计数的以下任意一个位置为起始连续15、16、17、18、19、20、21、22或23个核苷酸形成互补区域:2. The RNA inhibitor according to embodiment 1, wherein the antisense strand and the mRNA encoding IGF-1R (SEQ ID NO: 828) form a complementary region starting from any of the following positions counting from the 5' end: 15, 16, 17, 18, 19, 20, 21, 22 or 23 consecutive nucleotides:
第1118位核苷酸、第1120位核苷酸、第1154位核苷酸、第1367位核苷酸、第1407位核苷酸、第1415位核苷酸、第1532位核苷酸、第1625位核苷酸、第1627位核苷酸、第1628位核苷酸、第1631位核苷酸、第3356位核苷酸、第3357位核苷酸、第3359位核苷酸、第3792位核苷酸、第4198位核苷酸、第4200位核苷酸、第4208位核苷酸、第4685位核苷酸、第5246位核苷酸、第5392位核苷酸、第5393位核苷酸、第6329位核苷酸、第6332位核苷酸、第6333位核苷酸、第6334位核苷酸、第10215位核苷酸、第10738位核苷酸、第10740位核苷酸、第10770位核苷酸、第10772位核苷酸、第10773位核苷酸、第10946位核苷酸、第10956位核苷酸、第10957位核苷酸、第1418位核苷酸、第1541位核苷酸、第2050位核苷酸、第2055位核苷酸、第2056位核苷酸、第2233位核苷酸、第2234位核苷酸、第2456位核苷酸、第2591位核苷酸、第2603位核苷酸、第2606位核苷酸、第2609位核苷酸、第2776位核苷酸、第2890位核苷酸、第2906位核苷酸、第2909位核苷酸、第2957位核苷酸、第2960位核苷酸、第3008位核苷酸、第3195位核苷酸、第3398位核苷酸、第3608位核苷酸、第3609位核苷酸、第3650位核苷酸、第3660位核苷酸、第3815位核苷酸、第3882位核苷酸、第3996位核苷酸、第4067位核苷酸、第4121位核苷酸、第4122位核苷酸、第4292位核苷酸、第4293位核苷酸、第4295位核苷酸、第4516位核苷酸、第4519位核苷酸、第5163位核苷酸、第5309位核苷酸、第5310位核苷酸、第5377位核苷酸、第5380位核苷酸、第5381位核苷酸、第5663位核苷酸、第5700位核苷酸、第5711位核苷酸、第5712位核苷酸、第5721位核苷酸、第5896位核苷酸、第5898位核苷酸、第6203位核苷酸、第6236位核苷酸、第6237位核苷酸、第6240位核苷酸、第6245位核苷酸、第6288位核苷酸、第6299位核苷酸、第6305位核苷酸、第6309位核苷酸、第6310位核苷酸、第6343位核苷酸、第6363位核苷酸、第6365位核苷酸、第6366位核苷酸、第6373位核苷酸、第6379位核苷酸、第6381位核苷酸、第6431位核苷酸、第6434位核苷酸、第6496位核苷酸、第6518位核苷酸、第6755位核苷酸、第6760位核苷酸、第6883位核苷酸、第6885位核苷酸、第6947位核苷酸、第6948位核苷酸、第6949位核苷酸、第6952位核苷酸、第6953位核苷酸、第6954位核苷酸、第7574位核苷酸、第7621位核苷酸、第7764位核苷酸、第7830位核苷酸、第7906位核苷酸、第8540位核苷酸、第8836位核苷酸、第8892位核苷酸、第8975位核苷酸、第8977位核苷酸、第9163位核苷酸、第9175位核苷酸、第9186位核苷酸、第9265位核苷酸、第9267位核苷酸、第9340位核苷酸、第9347位核苷酸、第9352位核苷酸、第9356位核苷酸、第9478位核苷酸、第9480位核苷酸、第9606位核苷酸、第9611位核苷酸、第9634位核苷酸、第9680位核苷酸、第9681位核苷酸、第9724位核苷酸、第9725位核苷酸、第9814位核苷酸、第10015位核苷酸、第10016位核苷酸、第10189位核苷酸、第10244位核苷酸、第10266位核苷酸、第10490位核苷酸、第10526位核苷酸、第10528位核苷酸、第10534位核苷酸、第10535位核苷酸、第10537位核苷酸、第10540位核苷酸、第10541位核苷酸、第10679位核苷酸、第10694位核苷酸、第10717位核苷酸、第10728位核苷酸、第10729位核苷酸、第10730位核苷酸、第10754位核苷酸、第10763位核苷酸、第10766位核苷酸、第10942位核苷酸、第11034位核苷酸、第11078位核苷酸、第11126位核苷酸、第11156位核苷酸、第11159位核苷酸、第11160位核苷酸、第11292位核苷酸、第11340位核苷酸、第11344位核苷酸、第11383位核苷酸、第11395位核苷酸、第11789位核苷酸、第11864位核苷酸、第11865位核苷酸、第11939位核苷酸、第12092位核苷酸、第12116位核苷酸、第12130位核苷酸、第12154位核苷酸、第12156位核苷酸、第12177位核苷酸、第12195位核苷酸、第1164位核苷酸、第1163位核苷酸、第1162位核苷酸、第1161位核苷酸、第1160位核苷酸、第1165位核苷酸、第1166位核苷酸、第1167位核苷酸、第1168位核苷酸。Nucleotide No. 1118, Nucleotide No. 1120, Nucleotide No. 1154, Nucleotide No. 1367, Nucleotide No. 1407, Nucleotide No. 1415, Nucleotide No. 1532, Nucleotide No. 1625, Nucleotide No. 1627, Nucleotide No. 1628, Nucleotide No. 1631, Nucleotide No. 3356, Nucleotide No. 3357, Nucleotide No. 3359, Nucleotide No. 3792, Nucleotide No. 4198, Nucleotide No. 4200, Nucleotide No. 4208, Nucleotide No. 4685, Nucleotide No. 5246, Nucleotide No. 5392, Nucleotide No. 5393, Nucleotide No. 6329, Nucleotide No. 6332, Nucleotide No. 6333, Nucleotide No. 6334 nucleotide No. 4, nucleotide No. 10215, nucleotide No. 10738, nucleotide No. 10740, nucleotide No. 10770, nucleotide No. 10772, nucleotide No. 10773, nucleotide No. 10946, nucleotide No. 10956, nucleotide No. 10957, nucleotide No. 1418, nucleotide No. 1541, nucleotide No. 2050, nucleotide No. 2055, nucleotide No. 2056, nucleotide No. 2233, nucleotide No. 2234, nucleotide No. 2456, nucleotide No. 2591, nucleotide No. 2603, nucleotide No. 2606, nucleotide No. 2609, nucleotide No. 2776, nucleotide No. 2890, nucleotide No. 2906 , nucleotide No. 2909, nucleotide No. 2957, nucleotide No. 2960, nucleotide No. 3008, nucleotide No. 3195, nucleotide No. 3398, nucleotide No. 3608, nucleotide No. 3609, nucleotide No. 3650, nucleotide No. 3660, nucleotide No. 3815, nucleotide No. 3882, nucleotide No. 3996, nucleotide No. 4067, nucleotide No. 4121, nucleotide No. 4122, nucleotide No. 4292, nucleotide No. 4293, nucleotide No. 4295, nucleotide No. 4516, nucleotide No. 4519, nucleotide No. 5163, nucleotide No. 5309, nucleotide No. 5310, nucleotide No. 5377, nucleotide No. 53 nucleotide at position 80, nucleotide at position 5381, nucleotide at position 5663, nucleotide at position 5700, nucleotide at position 5711, nucleotide at position 5712, nucleotide at position 5721, nucleotide at position 5896, nucleotide at position 5898, nucleotide at position 6203, nucleotide at position 6236, nucleotide at position 6237, nucleotide at position 6240, nucleotide at position 6245, nucleotide at position 6288, nucleotide at position 6299, nucleotide at position 6305, nucleotide at position 6309, nucleotide at position 6310, nucleotide at position 6343, nucleotide at position 6363, nucleotide at position 6365, nucleotide at position 6366, nucleotide at position 6373, nucleotide at position 6379, nucleotide at position 6381 Acid, nucleotide No. 6431, nucleotide No. 6434, nucleotide No. 6496, nucleotide No. 6518, nucleotide No. 6755, nucleotide No. 6760, nucleotide No. 6883, nucleotide No. 6885, nucleotide No. 6947, nucleotide No. 6948, nucleotide No. 6949, nucleotide No. 6952, nucleotide No. 6953, nucleotide No. 6954, nucleotide No. 7574, nucleotide No. 7621, nucleotide No. 7764, nucleotide No. 7830, nucleotide No. 7906, nucleotide No. 8540, nucleotide No. 8836, nucleotide No. 8892, nucleotide No. 8975, nucleotide No. 8977, nucleotide No. 9163, nucleotide No. 9 nucleotide No. 175, nucleotide No. 9186, nucleotide No. 9265, nucleotide No. 9267, nucleotide No. 9340, nucleotide No. 9347, nucleotide No. 9352, nucleotide No. 9356, nucleotide No. 9478, nucleotide No. 9480, nucleotide No. 9606, nucleotide No. 9611, nucleotide No. 9634, nucleotide No. 9680, nucleotide No. 9681, nucleotide No. 9724, nucleotide No. 9725, nucleotide No. 9814, nucleotide No. 10015, nucleotide No. 10016, nucleotide No. 10189, nucleotide No. 10244, nucleotide No. 10266, nucleotide No. 10490, nucleotide No. 10526 , nucleotide No. 10528, nucleotide No. 10534, nucleotide No. 10535, nucleotide No. 10537, nucleotide No. 10540, nucleotide No. 10541, nucleotide No. 10679, nucleotide No. 10694, nucleotide No. 10717, nucleotide No. 10728, nucleotide No. 10729, nucleotide No. 10730, nucleotide No. 10754, nucleotide No. 10763, nucleotide No. 10766, nucleotide No. 10942, nucleotide No. 11034, nucleotide No. 11078, nucleotide No. 11126, nucleotide No. 11156, nucleotide No. 11159, nucleotide No. 11160, nucleotide No. 11292, Nucleotide at position 11340, nucleotide at position 11344, nucleotide at position 11383, nucleotide at position 11395, nucleotide at position 11789, nucleotide at position 11864, nucleotide at position 11865, nucleotide at position 11939, nucleotide at position 12092, nucleotide at position 12116, nucleotide at position 12130, nucleotide at position 12154, nucleotide at position 12156, nucleotide at position 12177, nucleotide at position 12195, nucleotide at position 1164, nucleotide at position 1163, nucleotide at position 1162, nucleotide at position 1161, nucleotide at position 1160, nucleotide at position 1165, nucleotide at position 1166, nucleotide at position 1167, and nucleotide at position 1168.
3.根据实施方式1-2任意一项所述的RNA抑制剂,其中所述反义链和编码IGF-1R的mRNA(SEQ ID NO:828)从5’端开始计数的第1160位核苷酸和第1188位核苷酸之间,第6235位核苷酸和第6465位核苷酸之间的序列形成互补区域,或第6329位核苷酸和第6455位核苷酸之间的序列形成互补区域。3. An RNA inhibitor according to any one of embodiments 1-2, wherein the antisense strand and the mRNA encoding IGF-1R (SEQ ID NO:828) form a complementary region between the 1160th nucleotide and the 1188th nucleotide, between the 6235th nucleotide and the 6465th nucleotide, or between the 6329th nucleotide and the 6455th nucleotide, counting from the 5' end.
4.根据实施方式1-3任意一项所述的RNA抑制剂,其中所述RNA抑制剂为核糖核酸,进一步的,所述RNA抑制剂为单链核糖核酸或双链核糖核酸。4. The RNA inhibitor according to any one of embodiments 1 to 3, wherein the RNA inhibitor is ribonucleic acid, and further, the RNA inhibitor is single-stranded ribonucleic acid or double-stranded ribonucleic acid.
5.根据实施方式1-4任意一项所述的RNA抑制剂,其中所述RNA抑制剂为反义寡核苷酸(ASO)、shRNA、miRNA或siRNA。5. The RNA inhibitor according to any one of embodiments 1-4, wherein the RNA inhibitor is an antisense oligonucleotide (ASO), shRNA, miRNA or siRNA.
6.根据实施方式1-5任意一项所述的RNA抑制剂,其包含能够与所述反义链形成互补双链的正义链,其中所述反义链包含与正义链序列中连续的至少15个核苷酸形成双链体互补区域的序列,所述双链体互补区域具有0、1、2、3、4或5个错配,优选的所述双链体互补区域长度为15-30个核苷酸对,更优选的为17-23个核苷酸对。6. An RNA inhibitor according to any one of embodiments 1-5, which comprises a sense strand capable of forming a complementary double strand with the antisense strand, wherein the antisense strand comprises a sequence that forms a duplex complementary region with at least 15 consecutive nucleotides in the sense strand sequence, and the duplex complementary region has 0, 1, 2, 3, 4 or 5 mismatches, and preferably the duplex complementary region is 15-30 nucleotide pairs in length, more preferably 17-23 nucleotide pairs in length.
7.根据实施方式6所述的RNA抑制剂,其中所述正义链和反义链存在于两条不同的核酸链上,优选的所述RNA抑制剂为siRNA或shRNA,更优的选所述RNA抑制剂为siRNA。7. The RNA inhibitor according to embodiment 6, wherein the sense strand and the antisense strand are present on two different nucleic acid strands, and preferably the RNA inhibitor is siRNA or shRNA, and more preferably the RNA inhibitor is siRNA.
8.根据实施方式6-7任意一项所述的RNA抑制剂,其中所述正义链和反义链存在于同一条核酸链上,优选的所述RNA抑制剂为shRNA。8. The RNA inhibitor according to any one of embodiments 6-7, wherein the sense strand and the antisense strand are present on the same nucleic acid strand, and preferably the RNA inhibitor is shRNA.
9.根据实施方式6-8任意一项所述的RNA抑制剂,其中所述正义链总长度为15-50个核苷酸,优选的所述正义链总长度为16-30个核苷酸,更优选的所述正义链总长度为17、18、19、20或21个核苷酸。9. An RNA inhibitor according to any one of embodiments 6-8, wherein the total length of the sense strand is 15-50 nucleotides, preferably the total length of the sense strand is 16-30 nucleotides, and more preferably the total length of the sense strand is 17, 18, 19, 20 or 21 nucleotides.
10.根据实施方式6-9任意一项所述的RNA抑制剂,其中所述反义链总长度为19-50个核苷酸,优选的所述反义链总长度为19-30个核苷酸,更优选的所述反义链总长度为21、22、23、24、25、26或27个核苷酸。10. An RNA inhibitor according to any one of embodiments 6-9, wherein the total length of the antisense strand is 19-50 nucleotides, preferably the total length of the antisense strand is 19-30 nucleotides, and more preferably the total length of the antisense strand is 21, 22, 23, 24, 25, 26 or 27 nucleotides.
11.根据实施方式6-10任意一项所述的RNA抑制剂,其中所述正义链和反义链分别独立地任选包含1、2或3个核苷酸的3’或5’突出端。11. An RNA inhibitor according to any one of embodiments 6-10, wherein the sense strand and the antisense strand each independently optionally comprise a 3' or 5' overhang of 1, 2 or 3 nucleotides.
12.根据实施方式11所述的RNA抑制剂,其中所述正义链和反义链都具有长度为1-3个核苷酸的3’突出端,或所述正义链具有长度为1-3个核苷酸的3’或5’突出端,或所述反义链具有长度为1-3个核苷酸的3’或5’突出端。12. An RNA inhibitor according to embodiment 11, wherein both the sense strand and the antisense strand have a 3' overhang of 1-3 nucleotides in length, or the sense strand has a 3' or 5' overhang of 1-3 nucleotides in length, or the antisense strand has a 3' or 5' overhang of 1-3 nucleotides in length.
13.根据实施方式1-12任意一项所述的RNA其中所述反义链包含如SEQ ID NO:199-400任意一项所述的序列中连续的至少15个核苷酸。13. An RNA according to any one of embodiments 1-12, wherein the antisense strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO: 199-400.
14.根据实施方式6-13任意一项所述的RNA抑制剂,其中所述正义链包含如SEQ ID NO:1-198任意一项所述的序列中连续的至少15个核苷酸。14. An RNA inhibitor according to any one of embodiments 6-13, wherein the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO: 1-198.
15.根据实施方式1-14任意一项所述的RNA抑制剂,其包含选自如下所示的双链体:ds-n1、ds-n2、ds-n3、ds-n4、ds-n5、ds-n6、ds-n7、ds-n8、ds-n9、ds-n10、ds-n11、ds-n12、ds-n13、ds-n14、ds-n15、ds-n16、ds-n17、ds-n18、ds-n19、ds-n20、ds-n21、ds-n22、ds-n23、ds-n24、ds-n25、ds-n26、ds-n27、ds-n28、ds-n29、ds-n30、ds-n31、ds-n32、ds-n33、ds-n34、ds-n35、ds-n36、ds-n37、ds-n38、ds-n39、ds-n40、ds-n41、ds-n42、ds-n43、ds-n44、ds-n45、ds-n46、ds-n47、ds-n48、ds-n49、ds-n50、ds-n51、ds-n52、ds-n53、ds-n54、ds-n55、ds-n56、ds-n57、ds-n58、ds-n59、ds-n60、ds-n61、ds-n62、ds-n63、ds-n64、ds-n65、ds-n66、ds-n67、ds-n68、ds-n69、ds-n70、ds-n71、ds-n72、ds-n73、ds-n74、ds-n75、ds-n76、ds-n77、ds-n78、ds-n79、ds-n80、ds-n81、ds-n82、ds-n83、ds-n84、ds-n85、ds-n86、ds-n87、ds-n88、ds-n89、ds-n90、ds-n91、ds-n92、ds-n93、ds-n94、ds-n95、ds-n96、ds-n97、ds-n98、ds-n99、ds-n100、ds-n101、ds-n102、ds-n103、ds-n104、ds-n105、ds-n106、ds-n107、ds-n108、ds-n109、ds-n110、ds-n111、ds-n112、ds-n113、ds-n114、ds-n115、ds-n116、ds-n117、ds-n118、ds-n119、ds-n120、ds-n121、ds-n122、ds-n123、ds-n124、ds-n125、ds-n126、ds-n127、ds-n128、ds-n129、ds-n130、ds-n131、ds-n132、ds-n133、ds-n134、ds-n135、ds-n136、ds-n137、ds-n138、ds-n139、ds-n140、ds-n141、ds-n142、ds-n143、ds-n144、ds-n145、ds-n146、ds-n147、ds-n148、ds-n149、ds-n150、ds-n151、ds-n152、ds-n153、ds-n154、ds-n155、ds-n156、ds-n157、ds-n158、ds-n159、ds-n160、ds-n161、ds-n162、ds-n163、ds-n164、ds-n165、ds-n166、ds-n167、ds-n168、ds-n169、ds-n170、ds-n171、ds-n172、ds-n173、ds-n174、ds-n175、ds-n176、ds-n177、ds-n178、ds-n179、ds-n180、ds-n181、ds-n182、ds-n183、ds-n184、ds-n185、ds-n186、ds-n187、ds-n188、ds-n189、ds-n190、ds-n191、ds-n192、ds-n193、ds-n194、ds-n195、ds-n196、ds-n197、ds-n198、ds-n201、ds-n202、ds-n203、ds-n204。15. The RNA inhibitor according to any one of embodiments 1 to 14, comprising a duplex selected from the group consisting of ds-n1, ds-n2, ds-n3, ds-n4, ds-n5, ds-n6, ds-n7, ds-n8, ds-n9, ds-n10, ds-n11, ds-n12, ds-n13, ds-n14, ds-n15, ds-n16, ds-n17, ds-n18, ds-n19, ds-n20, ds-n21, ds-n22, ds-n23, ds-n24, ds-n25, ds-n26, ds-n27, ds-n28, ds-n29, ds-n30, ds-n31, ds-n32, ds-n33, ds-n34, ds-n35, ds-n36, ds-n37 , ds-n38, ds-n39, ds-n40, ds-n41, ds-n42, ds-n43, ds-n44, ds-n45, ds-n46, ds-n47, ds-n48, ds-n49, ds-n50, ds-n5 1. ds-n52, ds-n53, ds-n54, ds-n55, ds-n56, ds-n57, ds-n58, ds-n59, ds-n60, ds-n61, ds-n62, ds-n63, ds-n64, ds- n65, ds-n66, ds-n67, ds-n68, ds-n69, ds-n70, ds-n71, ds-n72, ds-n73, ds-n74, ds-n75, ds-n76, ds-n77, ds-n78, ds -n79, ds-n80, ds-n81, ds-n82, ds-n83, ds-n84, ds-n85, ds-n86, ds-n87, ds-n88, ds-n89, ds-n90, ds-n91, ds-n92, d s-n93, ds-n94, ds-n95, ds-n96, ds-n97, ds-n98, ds-n99, ds-n100, ds-n101, ds-n102, ds-n103, ds-n104, ds-n105, d s-n106, ds-n107, ds-n108, ds-n109, ds-n110, ds-n111, ds-n112, ds-n113, ds-n114, ds-n115, ds-n116, ds-n117, d s-n118, ds-n119, ds-n120, ds-n121, ds-n122, ds-n123, ds-n124, ds-n125, ds-n126, ds-n127, ds-n128, ds-n129, ds -n130, ds-n131, ds-n132, ds-n133, ds-n134, ds-n135, ds-n136, ds-n137, ds-n138, ds-n139, ds-n140, ds-n141, ds- n142, ds-n143, ds-n144, ds-n145, ds-n146, ds-n147, ds-n148, ds-n149, ds-n150, ds-n151, ds-n152, ds-n153, ds-n 154, ds-n155, ds-n156, ds-n157, ds-n158, ds-n159, ds-n160, ds-n161, ds-n162, ds-n163, ds-n164, ds-n165, ds-n1 66. ds-n167, ds-n168, ds-n169, ds-n170, ds-n171, ds-n172, ds-n173, ds-n174, ds-n175, ds-n176, ds-n177, ds-n17 8. ds-n179, ds-n180, ds-n181, ds-n182, ds-n183, ds-n184, ds-n185, ds-n186, ds-n187, ds-n188, ds-n189, ds-n190 , ds-n191, ds-n192, ds-n193, ds-n194, ds-n195, ds-n196, ds-n197, ds-n198, ds-n201, ds-n202, ds-n203, ds-n204.
16.根据实施方式15所述的RNA抑制剂,其包含选自如下所示的双链体:ds-n17、ds-n23、ds-n31、ds-n39、ds-n45、ds-n58、ds-n60、ds-n64、ds-n67、ds-n68、ds-n73、ds-n74、ds-n76、ds-n77、ds-n80、ds-n81、ds-n83、ds-n84、ds-n86、ds-n88、ds-n89、ds-n98、ds-n99、ds-n103、ds-n104、ds-n112、ds-n113、ds-n115、ds-n153、ds-n154、ds-n156、ds-n157、ds-n163、ds-n164、ds-n165、ds-n188、ds-n190、ds-n191、ds-n192、ds-n193、ds-n194、ds-n195、ds-n196、ds-n197、ds-n198。16. The RNA inhibitor of embodiment 15, comprising a duplex selected from the group consisting of ds-n17, ds-n23, ds-n31, ds-n39, ds-n45, ds-n58, ds-n60, ds-n64, ds-n67, ds-n68, ds-n73, ds-n74, ds-n76, ds-n77, ds-n80, ds-n81, ds-n83, ds-n84, ds-n86, ds-n88, ds-n89, ds-n 98. ds-n99, ds-n103, ds-n104, ds-n112, ds-n113, ds-n115, ds-n153, ds-n154, ds-n156, ds-n157, ds-n163, ds- n164, ds-n165, ds-n188, ds-n190, ds-n191, ds-n192, ds-n193, ds-n194, ds-n195, ds-n196, ds-n197, ds-n198.
17.根据实施方式15所述的RNA抑制剂,其包含选自如下所示的双链体:ds-n17、ds-n23、ds-n31、ds-n39、ds-n45、ds-n58、ds-n60、ds-n64、ds-n67、ds-n68、ds-n73、ds-n74、ds-n76、ds-n77、ds-n80、ds-n81、ds-n83、ds-n84、ds-n86、ds-n88、ds-n89、ds-n98、ds-n99、ds-n103、ds-n104、ds-n112、ds-n113、ds-n115、ds-n153、ds-n154、ds-n156、ds-n157、ds-n163、ds-n164、ds-n165、ds-n188。17. The RNA inhibitor of embodiment 15, comprising a duplex selected from the group consisting of ds-n17, ds-n23, ds-n31, ds-n39, ds-n45, ds-n58, ds-n60, ds-n64, ds-n67, ds-n68, ds-n73, ds-n74, ds-n76, ds-n77, ds-n80, ds-n81, ds- n83, ds-n84, ds-n86, ds-n88, ds-n89, ds-n98, ds-n99, ds-n103, ds-n104, ds-n112, ds-n1 13. ds-n115, ds-n153, ds-n154, ds-n156, ds-n157, ds-n163, ds-n164, ds-n165, ds-n188.
18.根据实施方式16所述的RNA抑制剂,其包含选自如下所示的双链体:ds-n23、ds-n58、ds-n67、ds-n86、ds-n89、ds-n98、ds-n99、ds-n103、ds-n190、ds-n198、ds-n113。18. The RNA inhibitor of embodiment 16, comprising a duplex selected from the group consisting of ds-n23, ds-n58, ds-n67, ds-n86, ds-n89, ds-n98, ds-n99, ds-n103, ds-n190, ds-n198, and ds-n113.
19.根据实施方式1-18任意一项所述的RNA抑制剂,其特征在于,所述反义链在3’末端进一步包括区域B1,所述正义链在5’末端进一步包括区域A1,其中区域A1为0-6个核苷酸,区域B1为0-6个核苷酸。19. An RNA inhibitor according to any one of embodiments 1-18, characterized in that the antisense strand further includes region B1 at the 3' end, and the sense strand further includes region A1 at the 5' end, wherein region A1 is 0-6 nucleotides and region B1 is 0-6 nucleotides.
20.根据实施方式19所述的RNA抑制剂,其特征在于,所述区域B1为0,1,2,3,4,5或6个核苷酸;优选的所述区域B1为0或2个核苷酸。20. The RNA inhibitor according to embodiment 19 is characterized in that the region B1 is 0, 1, 2, 3, 4, 5 or 6 nucleotides; preferably, the region B1 is 0 or 2 nucleotides.
21.根据实施方式16-20任意一项所述的RNA抑制剂,其特征在于,所述区域A1为0,1,2,3,4,5或6个核苷酸;优选的所述区域A1为0或2个核苷酸。21. The RNA inhibitor according to any one of embodiments 16-20, characterized in that the region A1 is 0, 1, 2, 3, 4, 5 or 6 nucleotides; preferably, the region A1 is 0 or 2 nucleotides.
22.根据实施方式21所述的抑制RNA抑制剂,其特征在于,所述反义链在5’末端进一步包括区域X2,所述正义链或正义核酸在3’末端进一步包括区域X1,区域X1和区域X2互补配对。22. The RNA inhibitor according to embodiment 21 is characterized in that the antisense chain further includes region X2 at the 5’ end, and the sense chain or sense nucleic acid further includes region X1 at the 3’ end, and region X1 and region X2 are complementary to each other.
23.根据实施方式22所述的RNA抑制剂,其中X1为A、U、修饰的A或修饰的U,X2为U、A、修饰的U或修饰的A。23. The RNA inhibitor according to embodiment 22, wherein X1 is A, U, modified A or modified U, and X2 is U, A, modified U or modified A.
24.根据实施方式19-23任意一项所述的RNA抑制剂,其特征在于,反义链在5’末端按照3’至5’方向依次包含X2、Y、Z和N,其中X2和Y分别独立为A、U、修饰的A或修饰的U,所述Z为G或修饰的G,所述N包含至少一个核苷酸。24. An RNA inhibitor according to any one of embodiments 19-23, characterized in that the antisense strand comprises X2, Y, Z and N in sequence from 3' to 5' direction at the 5' end, wherein X2 and Y are independently A, U, modified A or modified U, respectively, Z is G or modified G, and N comprises at least one nucleotide.
25.根据实施方式19-24任意一项所述的RNA抑制剂,其中X2、Y、Z按照3’至5’方向依次为AAG、AUG、UUG或UAG,或经过部分或全部修饰的上述序列。25. An RNA inhibitor according to any one of embodiments 19-24, wherein X2, Y, and Z are AAG, AUG, UUG, or UAG, respectively, from 3' to 5', or the above sequences that have been partially or fully modified.
26.根据实施方式21-25任意一项所述的RNA抑制剂,其中X2、Y、Z按照3’至5’方向依次为AAG、AUG、UUG或UAG,或经过部分或全部修饰的上述序列。26. An RNA inhibitor according to any one of embodiments 21-25, wherein X2, Y, and Z are AAG, AUG, UUG, or UAG, respectively, from 3' to 5', or the above sequences that have been partially or fully modified.
27.根据实施方式21-26任意一项所述的RNA抑制剂,其中N为C或修饰的C。27. The RNA inhibitor according to any one of embodiments 21-26, wherein N is C or modified C.
28.根据实施方式21-27任意一项所述的RNA抑制剂,其中X2、Y、Z和N按照3’至5’方向依次为AAGC和UAGC,或经过部分或全部修饰的上述序列。28. An RNA inhibitor according to any one of embodiments 21-27, wherein X2, Y, Z and N are AAGC and UAGC in the 3' to 5' direction, or the above sequences that have been partially or fully modified.
29.根据实施方式16-28任意一项所述的RNA抑制剂,其中所述反义链包含如SEQ ID NO:401-413任意一项所述的序列中连续的至少15个核苷酸。29. An RNA inhibitor according to any one of embodiments 16-28, wherein the antisense chain comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:401-413.
30.根据实施方式1-29任意一项所述的RNA抑制剂,其选自ds-n190-1、ds-n191-1、ds-n192-1、ds-n193-1、ds-n194-1、ds-n195-1、ds-n196-1、ds-n197-1、ds-n198-1、ds-n201-1、ds-n202-1、ds-n203-1、ds-n204-1。30. The RNA inhibitor according to any one of embodiments 1-29, which is selected from ds-n190-1, ds-n191-1, ds-n192-1, ds-n193-1, ds-n194-1, ds-n195-1, ds-n196-1, ds-n197-1, ds-n198-1, ds-n201-1, ds-n202-1, ds-n203-1, and ds-n204-1.
31.根据实施方式1-30任意一项所述的RNA抑制剂,其中所述RNA抑制剂中至少一个核苷酸为修饰的核苷酸。31. The RNA inhibitor according to any one of embodiments 1-30, wherein at least one nucleotide in the RNA inhibitor is a modified nucleotide.
32.根据实施方式1-31任意一项所述的RNA抑制剂,其中所述RNA抑制剂中至少70%、80%、90%、95%的核苷酸为修饰的核苷酸;优选的所有核苷酸为修饰的核苷酸。32. The RNA inhibitor according to any one of embodiments 1-31, wherein at least 70%, 80%, 90%, 95% of the nucleotides in the RNA inhibitor are modified nucleotides; preferably all nucleotides are modified nucleotides.
33.根据实施方式31-32任意一项所述的RNA抑制剂,其中所述修饰包括以下一种或多种的组合:2’-OMe(2’-O-甲基)修饰、2’-F(2’-脱氧-2’-氟)修饰、2’-O-MOE(2’-O-甲氧基乙基)修饰、2’-脱氧(2’-d)修饰、5’-吗啉(5’-Mo)修饰、解锁核酸(UNA)修饰、乙二醇核酸(GNA)修饰、锁核酸(LNA)修饰、三环DNA(tcDNA)修饰、(S)-约束乙基双环核酸((S)-cEt-BNA)修饰、硫代磷酸酯(PS)修饰、二硫代磷酸酯(PS2)修饰、甲基膦酸酯(MP)修饰、甲氧基丙甲基膦酸酯(MOP)修饰、肽核酸(PNA)修饰、5’-(E)-乙烯基磷酸酯(VP)修饰(VP)、N6-甲基腺苷(m6A)修饰、5-甲基胞苷(m5C)修饰、3-甲基尿嘧啶核苷(m3U)修饰、5-甲基脲苷(m5U)修饰、假脲苷修饰、2-硫脲苷(s2U)修饰、丙炔尿嘧啶核苷(5-pU)修饰、将核苷酸的5’端或者3’端键合连接反置的无碱基核苷酸(invAB)修饰、将核苷酸替换为反置的无碱基核苷酸(invAb)修饰、将核苷酸替换为2,4-二氟甲苯基核糖核苷酸(rF)修饰或将核苷酸替换为(S)-甘油核酸修饰,优选的修饰为2'-OMe修饰、2'-F修饰、2'-脱氧修饰、VP修饰、5'-MP修饰、PS修饰、PS2修饰、MP修饰、MOP修饰、M06修饰、invAb修饰或invAB修饰。33. An RNA inhibitor according to any one of embodiments 31-32, wherein the modification comprises a combination of one or more of the following: 2'-OMe (2'-O-methyl) modification, 2'-F (2'-deoxy-2'-fluoro) modification, 2'-O-MOE (2'-O-methoxyethyl) modification, 2'-deoxy (2'-d) modification, 5'-morpholine (5'-Mo) modification, unlocked nucleic acid (UNA) modification, glycol nucleic acid (GNA) modification, locked nucleic acid (LNA) modification, tricyclic DNA (tcDNA) modification, (S)-constrained ethyl bicyclic nucleic acid ((S)-cEt-BNA) modification, phosphorothioate (PS) modification, phosphorodithioate (PS2) modification, methylphosphonate (MP) modification, methoxypropylmethylphosphonate (MOP) modification, peptide nucleic acid (PNA) modification, 5'-(E)-vinyl phosphate (VP ) modification (VP), N6-methyladenosine (m6A) modification, 5-methylcytidine (m5C) modification, 3-methyluridine (m3U) modification, 5-methylureidine (m5U) modification, pseudouridine modification, 2-thioureidine (s2U) modification, propyne uridine (5-pU) modification, inverted abasic nucleotide (invAB) modification by bonding the 5' or 3' end of the nucleotide, replacing the nucleotide with an inverted abasic nucleotide (invAb) modification, replacing the nucleotide with a 2,4-difluoromethylphenyl ribonucleotide (rF) modification or replacing the nucleotide with a (S)-glycerol nucleic acid modification, preferably 2'-OMe modification, 2'-F modification, 2'-deoxy modification, VP modification, 5'-MP modification, PS modification, PS2 modification, MP modification, MOP modification, M06 modification, invAb modification or invAB modification.
34.根据实施方式31-33任意一项所述的RNA抑制剂,其中反义链的3'或5'-端包括磷酸盐或磷酸盐模拟物,或者正义链的3'或5'-端包括磷酸盐或磷酸盐模拟物。34. The RNA inhibitor according to any one of embodiments 31-33, wherein the 3' or 5'-end of the antisense strand comprises a phosphate or a phosphate mimetic, or the 3' or 5'-end of the sense strand comprises a phosphate or a phosphate mimetic.
35.根据实施方式34所述的RNA抑制剂,其中磷酸盐模拟物包括5’-(E)-乙烯基膦酸酯、5’-甲基膦酸酯、(S)-5’-C-甲基类似物和5’-硫代磷酸酯(5’-PS)。35. An RNA inhibitor according to embodiment 34, wherein the phosphate mimetics include 5'-(E)-vinyl phosphonate, 5'-methyl phosphonate, (S)-5'-C-methyl analogs and 5'-thiophosphate (5'-PS).
36.根据实施方式31-35任意一项所述的RNA抑制剂,其中反义链的5'-端包括(M06)修饰: 36. The RNA inhibitor according to any one of embodiments 31-35, wherein the 5'-end of the antisense strand comprises (M06) modification:
37.根据实施方式31-36任意一项所述的RNA抑制剂,其中反义链的3'或5'-端存在invAB修饰,或者正义链的3'或5'-端存在invAB修饰。37. The RNA inhibitor according to any one of embodiments 31-36, wherein the 3' or 5'-end of the antisense strand is modified with invAB, or the 3' or 5'-end of the sense strand is modified with invAB.
38.根据实施方式31-37任意一项所述的RNA抑制剂,其中反置的无碱基核苷酸或M06通过硫代磷酸酯与反义链的3'或5'-端或者正义链的3'或5'-端相连。38. The RNA inhibitor according to any one of embodiments 31-37, wherein the inverted abasic nucleotide or M06 is linked to the 3' or 5' end of the antisense strand or the 3' or 5' end of the sense strand via a phosphorothioate.
39.根据实施方式31-38任意一项所述的RNA抑制剂,具有以下修饰组合39. The RNA inhibitor according to any one of embodiments 31-38, having the following modification combination
a)正义链包含长度为16-21nt的第一序列,所述第一序列包括以下修饰:从5’端开始计数,第9、10、11位的核苷酸存在2’-F修饰;a) the positive strand comprises a first sequence of 16-21 nt in length, wherein the first sequence comprises the following modifications: counting from the 5' end, nucleotides at positions 9, 10, and 11 have 2'-F modifications;
b)反义链包含长度为16-21nt的第二序列,所述第二序列包括以下修饰:从5’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和3位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接;并且从5’端开始计数,第2、3、4、12、14、16位的核苷酸存在2’-F修饰。b) the antisense strand comprises a second sequence of 16-21 nt in length, wherein the second sequence includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, a phosphorothioate linkage between the 2nd and 3rd nucleotides, and a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides.
40.根据实施方式39所述的RNA抑制剂,其中第一序列长度优为16nt、17nt、18nt、19nt、20nt、21nt,优选21nt。40. The RNA inhibitor according to embodiment 39, wherein the length of the first sequence is preferably 16nt, 17nt, 18nt, 19nt, 20nt, 21nt, preferably 21nt.
41.根据实施方式39所述的RNA抑制剂,其中第二序列长度优为16nt、17nt、18nt、19nt、20nt、21nt,优选21nt。41. The RNA inhibitor according to embodiment 39, wherein the second sequence length is preferably 16nt, 17nt, 18nt, 19nt, 20nt, 21nt, preferably 21nt.
42.根据实施方式39-41任意一项所述的RNA抑制剂,具有以下修饰组合42. The RNA inhibitor according to any one of embodiments 39-41, having the following modified combinations
a)正义链长度为21nt,包括以下修饰:从5’端开始计数,第9、10、11位的核苷酸存在2’-F修饰;a) The forward strand is 21 nt long and includes the following modifications: Counting from the 5' end, nucleotides at positions 9, 10, and 11 have 2'-F modifications;
b)反义链长度为21nt,包括以下修饰:从5’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和3位核苷酸之间存在硫代磷酸酯连接,第3位和第4位核苷酸之间存在硫代磷酸酯连接;并且从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接;并且从5’端开始计数,第2、3、4、12、14、16位的核苷酸存在2’-F修饰。b) The antisense strand is 21 nt in length and includes the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, a phosphorothioate linkage between the 2nd and 3rd nucleotides, and a phosphorothioate linkage between the 3rd and 4th nucleotides; and counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides; and counting from the 5' end, there is a 2'-F modification at the 2nd, 3rd, 4th, 12th, 14th, and 16th nucleotides.
43.根据实施方式28-42任意一项所述的RNA抑制剂,其中所述反义链包含如SEQ ID NO:624-812任意一项所述的序列中连续的至少15个核苷酸。43. An RNA inhibitor according to any one of embodiments 28-42, wherein the antisense chain comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:624-812.
44.根据实施方式28-42任意一项所述的RNA抑制剂,其中所述正义链包含如SEQ ID NO:414-602任意一项所述的序列中连续的至少15个核苷酸。44. An RNA inhibitor according to any one of embodiments 28-42, wherein the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:414-602.
45.根据实施方式28-44任意一项所述的RNA抑制剂,其选自:ds-m1、ds-m2、ds-m3、ds-m4、ds-m5、ds-m6、ds-m7、ds-m8、ds-m9、ds-m10、ds-m11、ds-m12、ds-m13、ds-m14、ds-m15、ds-m16、ds-m17、ds-m18、ds-m19、ds-m20、ds-m21、ds-m22、ds-m23、ds-m24、ds-m25、ds-m26、ds-m27、ds-m28、ds-m29、ds-m30、ds-m31、ds-m32、ds-m33、ds-m34、ds-m35、ds-m36、ds-m37、ds-m38、ds-m39、ds-m40、ds-m41、ds-m42、ds-m43、ds-m44、ds-m45、ds-m46、ds-m47、ds-m48、ds-m49、ds-m50、ds-m51、ds-m52、ds-m53、ds-m54、ds-m55、ds-m56、ds-m57、ds-m58、ds-m59、ds-m60、ds-m61、ds-m62、ds-m63、ds-m64、ds-m65、ds-m66、ds-m67、ds-m68、ds-m69、ds-m70、ds-m71、ds-m72、ds-m73、ds-m74、ds-m75、ds-m76、ds-m77、ds-m78、ds-m79、ds-m80、ds-m81、ds-m82、ds-m83、ds-m84、ds-m85、ds-m86、ds-m87、ds-m88、ds-m89、ds-m90、ds-m91、ds-m92、ds-m93、ds-m94、ds-m95、ds-m96、ds-m97、ds-m98、ds-m99、ds-m100、ds-m101、ds-m102、ds-m103、ds-m104、ds-m105、ds-m106、ds-m107、ds-m108、ds-m109、ds-m110、ds-m111、ds-m112、ds-m113、ds-m114、ds-m115、ds-m116、ds-m117、ds-m118、ds-m119、ds-m120、ds-m121、ds-m122、ds-m123、ds-m124、ds-m125、ds-m126、ds-m127、ds-m128、ds-m129、ds-m130、ds-m131、ds-m132、ds-m133、ds-m134、ds-m135、ds-m136、ds-m137、ds-m138、ds-m139、ds-m140、ds-m141、ds-m142、ds-m143、ds-m144、ds-m145、ds-m146、ds-m147、ds-m148、ds-m149、ds-m150、ds-m151、ds-m152、ds-m153、ds-m154、ds-m155、ds-m156、ds-m157、ds-m158、ds-m159、ds-m160、ds-m161、ds-m162、ds-m163、ds-m164、ds-m165、ds-m166、ds-m167、ds-m168、ds-m169、ds-m170、ds-m171、ds-m172、ds-m173、ds-m174、ds-m175、ds-m176、ds-m177、ds-m178、ds-m179、ds-m180、ds-m181、ds-m182、ds-m183、ds-m184、ds-m185、ds-m186、ds-m187、ds-m188、ds-m189。45. The RNA inhibitor according to any one of embodiments 28-44, which is selected from the group consisting of ds-m1, ds-m2, ds-m3, ds-m4, ds-m5, ds-m6, ds-m7, ds-m8, ds-m9, ds-m10, ds-m11, ds-m12, ds-m13, ds-m14, ds-m15, ds-m16, ds-m17, ds-m18, ds-m19, ds-m20, ds-m21, ds-m22, ds-m23, -m23, ds-m24, ds-m25, ds-m26, ds-m27, ds-m28, ds-m29, ds-m30, ds-m31, ds-m32, ds-m33, ds-m34, ds-m35, d s-m36, ds-m37, ds-m38, ds-m39, ds-m40, ds-m41, ds-m42, ds-m43, ds-m44, ds-m45, ds-m46, ds-m47, ds-m48, ds-m49, ds-m50, ds-m51, ds-m52, ds-m53, ds-m54, ds-m55, ds-m56, ds-m57, ds-m58, ds-m59, ds-m60, ds-m6 1. ds-m62, ds-m63, ds-m64, ds-m65, ds-m66, ds-m67, ds-m68, ds-m69, ds-m70, ds-m71, ds-m72, ds-m73, ds-m 74. ds-m75, ds-m76, ds-m77, ds-m78, ds-m79, ds-m80, ds-m81, ds-m82, ds-m83, ds-m84, ds-m85, ds-m86, ds- m87, ds-m88, ds-m89, ds-m90, ds-m91, ds-m92, ds-m93, ds-m94, ds-m95, ds-m96, ds-m97, ds-m98, ds-m99, ds -m100, ds-m101, ds-m102, ds-m103, ds-m104, ds-m105, ds-m106, ds-m107, ds-m108, ds-m109, ds-m110, ds- m111, ds-m112, ds-m113, ds-m114, ds-m115, ds-m116, ds-m117, ds-m118, ds-m119, ds-m120, ds-m121, ds-m1 22. ds-m123, ds-m124, ds-m125, ds-m126, ds-m127, ds-m128, ds-m129, ds-m130, ds-m131, ds-m132, ds-m133 , ds-m134, ds-m135, ds-m136, ds-m137, ds-m138, ds-m139, ds-m140, ds-m141, ds-m142, ds-m143, ds-m144, d s-m145, ds-m146, ds-m147, ds-m148, ds-m149, ds-m150, ds-m151, ds-m152, ds-m153, ds-m154, ds-m155, ds -m156, ds-m157, ds-m158, ds-m159, ds-m160, ds-m161, ds-m162, ds-m163, ds-m164, ds-m165, ds-m166, ds-m 167, ds-m168, ds-m169, ds-m170, ds-m171, ds-m172, ds-m173, ds-m174, ds-m175, ds-m176, ds-m177, ds-m17 8. ds-m179, ds-m180, ds-m181, ds-m182, ds-m183, ds-m184, ds-m185, ds-m186, ds-m187, ds-m188, ds-m189.
46.根据实施方式28-39任意一项所述的RNA抑制剂,其中46. The RNA inhibitor according to any one of embodiments 28-39, wherein
a)正义链包含长度为18-21nt的第三序列,所述第三序列包括以下修饰:从5’端开始计数,正义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接,正义链第9、10、11、18位的核苷酸存在a) the sense strand comprises a third sequence of 18-21 nt in length, wherein the third sequence comprises the following modifications: counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides of the sense strand, there is a phosphorothioate linkage between the 2nd and 3rd nucleotides, there is a phosphorothioate linkage between the 9th, 10th, 11th, and 18th nucleotides of the sense strand
2’-F修饰,其余为2’-OMe修饰;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接;2’-F modification, the rest are 2’-OMe modification; counting from the 3’ end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides;
b)反义链包含长度为19-26nt的第四序列,所述第四序列包括以下修饰:从5’端开始计数,反义链第1、2、5、9、17、19位的核苷酸存在2’-F修饰,其余为2’-OMe修饰,第4和第5核苷酸之间存在硫代磷酸酯连接;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接。b) the antisense strand comprises a fourth sequence with a length of 19-26 nt, wherein the fourth sequence includes the following modifications: counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense strand are 2'-F modified, the rest are 2'-OMe modified, and there is a phosphorothioate connection between the 4th and 5th nucleotides; counting from the 3' end, there is a phosphorothioate connection between the 1st and 2nd nucleotides, and there is a phosphorothioate connection between the 2nd and 3rd nucleotides.
47.根据实施方式46所述的RNA抑制剂,其中第三序列长度优为18nt、19nt、20nt、21nt、22nt、21nt,优选21nt。47. The RNA inhibitor according to embodiment 46, wherein the length of the third sequence is preferably 18nt, 19nt, 20nt, 21nt, 22nt, 21nt, preferably 21nt.
48.根据实施方式47所述的RNA抑制剂,其中第四序列长度优为19nt、20nt、21nt、22nt、23nt、24nt,25nt、26nt,优选26nt。48. The RNA inhibitor according to embodiment 47, wherein the length of the fourth sequence is preferably 19nt, 20nt, 21nt, 22nt, 23nt, 24nt, 25nt, 26nt, preferably 26nt.
49.根据实施方式46-48任意一项所述的RNA抑制剂,其中49. The RNA inhibitor according to any one of embodiments 46-48, wherein
a)正义链长度为21nt,从5’端开始计数,正义链第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接,正义链第9、10、11、18位的核苷酸存在2’-F修饰,其余为2’-OMe修饰;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接;a) The length of the sense strand is 21 nt. Counting from the 5' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides of the sense strand, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides. The 9th, 10th, 11th, and 18th nucleotides of the sense strand are 2'-F modified, and the rest are 2'-OMe modified; counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides;
b)反义链长度为26nt,从5’端开始计数,反义链第1、2、5、9、17、19位的核苷酸存在2’-F修饰,其余为2’-OMe修饰,第4和第5核苷酸之间存在硫代磷酸酯连接;从3’端开始计数,第1位和第2位核苷酸之间存在硫代磷酸酯连接,第2位和第3位核苷酸之间存在硫代磷酸酯连接。b) The antisense chain is 26 nt in length. Counting from the 5' end, the nucleotides at positions 1, 2, 5, 9, 17, and 19 of the antisense chain are modified with 2'-F, and the rest are modified with 2'-OMe. There is a phosphorothioate linkage between the 4th and 5th nucleotides. Counting from the 3' end, there is a phosphorothioate linkage between the 1st and 2nd nucleotides, and there is a phosphorothioate linkage between the 2nd and 3rd nucleotides.
50.根据实施方式31-49任意一项所述的RNA抑制剂,其中所述反义链包含如SEQ ID NO:813-827任意一项所述的序列中连续的至少15个核苷酸。50. An RNA inhibitor according to any one of embodiments 31-49, wherein the antisense chain comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:813-827.
51.根据实施方式31-50任意一项所述的RNA抑制剂,其中所述正义链包含如SEQ ID NO:603-617任意一项所述的序列中连续的至少15个核苷酸。51. An RNA inhibitor according to any one of embodiments 31-50, wherein the positive strand comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO: 603-617.
52.根据实施方式31-51任意一项所述的RNA抑制剂,其包含选自如下所示的双链体:ds-m190、ds-m191、ds-m192、ds-m193、ds-m194、ds-m195、ds-m196、ds-m197、ds-m198、ds-m199、ds-m200、ds-m201、ds-m202、ds-m203和ds-m204。52. The RNA inhibitor of any one of embodiments 31-51, comprising a duplex selected from the group consisting of ds-m190, ds-m191, ds-m192, ds-m193, ds-m194, ds-m195, ds-m196, ds-m197, ds-m198, ds-m199, ds-m200, ds-m201, ds-m202, ds-m203, and ds-m204.
53.根据实施方式1-52任意一项所述的RNA抑制剂,还包含递送系统,其中所述递送系统缀合于正义链和/或反义链,所述递送系统能够使所述RNA抑制剂到达靶组织的目标RNA产生基因沉默效应。53. The RNA inhibitor according to any one of embodiments 1-52 further comprises a delivery system, wherein the delivery system is conjugated to the sense strand and/or antisense strand, and the delivery system enables the RNA inhibitor to reach the target RNA in the target tissue to produce a gene silencing effect.
54.根据实施方式53所述的RNA抑制剂,其中,所述靶组织是眼部组织,关节组织,中枢神经组织,外周神经组织,肿瘤,肝组织,肾组织,肌肉组织,脂肪组织。54. The RNA inhibitor according to embodiment 53, wherein the target tissue is eye tissue, joint tissue, central nervous tissue, peripheral nervous tissue, tumor, liver tissue, kidney tissue, muscle tissue, or adipose tissue.
55.根据实施方式54所述的RNA抑制剂,其中,所述眼组织为视神经、小梁网、近管组织、神经节、巩膜外静脉、施累姆氏管或眼部外周组织,优选的,所述的关节组织包含软骨组织,关节结缔组织,骨组织;优选的,所述的中枢神经组织包含脊髓组织,脑组织;优选的,所述的外周神经组织包含关节内神经组织,肌肉神经组织;优选的,脂肪组织包含皮下脂肪组织,内脏脂肪组织。55. According to the RNA inhibitor described in embodiment 54, the eye tissue is optic nerve, trabecular meshwork, proximal canal tissue, ganglion, episcleral vein, Schlemm's canal or peripheral eye tissue, preferably, the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue; preferably, the central nervous tissue comprises spinal cord tissue and brain tissue; preferably, the peripheral nervous tissue comprises intra-articular nervous tissue and muscle nervous tissue; preferably, the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
56.根据实施方式55所述的RNA抑制剂,其中,所述眼组织为视网膜神经节、内皮细胞、眼外周肌肉或眼外周脂肪。56. The RNA inhibitor of embodiment 55, wherein the eye tissue is retinal ganglion, endothelial cells, periocular muscle, or periocular fat.
57.根据实施方式53-56任意一项所述的RNA抑制剂,其中,所述递送系统分别独立地与双链核糖核酸的一个或多个内部位置缀合。57. An RNA inhibitor according to any one of embodiments 53-56, wherein the delivery system is independently conjugated to one or more internal positions of the double-stranded ribonucleic acid.
58.根据实施方式57所述的RNA抑制剂,其中,所述内部位置在核碱基、糖环、甲基膦酸酯健、硫代磷酸二酯键或磷酸二酯键上。58. The RNA inhibitor of embodiment 57, wherein the internal position is on a nucleobase, a sugar ring, a methylphosphonate bond, a phosphorothioate diester bond, or a phosphodiester bond.
59.根据实施方式53-58任意一项所述的RNA抑制剂,其中,所述递送系统是亲脂性结构,所述亲脂性结构包括亲脂性基团和连接子,所述亲脂性基团通过连接子连接到所述双链核糖核酸上。59. The RNA inhibitor according to any one of embodiments 53-58, wherein the delivery system is a lipophilic structure, the lipophilic structure comprises a lipophilic group and a linker, and the lipophilic group is connected to the double-stranded ribonucleic acid via the linker.
60.根据实施方式59所述的RNA抑制剂,其中,所述亲脂性结构选自脂肪族、脂环族和多脂环族化合物。60. The RNA inhibitor according to embodiment 59, wherein the lipophilic structure is selected from aliphatic, alicyclic and polyaliphatic compounds.
61.根据实施方式60所述的RNA抑制剂,其中,所述亲脂性结构含有饱和或不饱和的C16或C22。61. The RNA inhibitor according to embodiment 60, wherein the lipophilic structure contains saturated or unsaturated C16 or C22.
62.根据实施方式59-61任意一项所述的RNA抑制剂,其中,所述连接子选自单键、醚、硫醚、尿素、碳酸酯、胺、酰胺、马来酰亚胺-硫醚、二硫化物、磷酸二酯、磺酰胺键、点击反应的产物和氨基甲酸酯。62. An RNA inhibitor according to any one of embodiments 59-61, wherein the linker is selected from a single bond, an ether, a thioether, a urea, a carbonate, an amine, an amide, a maleimide-thioether, a disulfide, a phosphodiester, a sulfonamide bond, a product of a click reaction, and a carbamate.
63.根据实施方式53-62所述的RNA抑制剂,其中,所述递送系统为 63. The RNA inhibitor according to embodiments 53-62, wherein the delivery system is
64.根据实施方式53-63任意一项所述的RNA抑制剂,其中所述递送系统缀合于反义链或反义核酸片段的5’末端和/或3’末端。64. An RNA inhibitor according to any one of embodiments 53-63, wherein the delivery system is conjugated to the 5’ end and/or 3’ end of the antisense chain or antisense nucleic acid fragment.
65.根据实施方式53-64任意一项所述的RNA抑制剂,其中所述递送系统缀合于正义链或正义核酸片段的5’末端和/或3’末端。65. An RNA inhibitor according to any one of embodiments 53-64, wherein the delivery system is conjugated to the 5' end and/or 3' end of the sense strand or sense nucleic acid fragment.
66.根据实施方式53-65任意一项所述的RNA抑制剂,其中所述递送系统缀合于反义链或反义核酸片段的5’末端,且所述配体缀合于正义链或正义核酸片段的3’末端,所述两个配体相同或不同。66. An RNA inhibitor according to any one of embodiments 53-65, wherein the delivery system is conjugated to the 5’ end of the antisense chain or the antisense nucleic acid fragment, and the ligand is conjugated to the 3’ end of the sense chain or the sense nucleic acid fragment, and the two ligands are the same or different.
67.根据实施方式53-66任意一项所述的RNA抑制剂,其中所述递送系统缀合于反义链或反义核酸片段的3’末端,且所述配体缀合于正义链或正义核酸片段的5’末端,所述两个配体相同或不同。67. An RNA inhibitor according to any one of embodiments 53-66, wherein the delivery system is conjugated to the 3’ end of the antisense chain or the antisense nucleic acid fragment, and the ligand is conjugated to the 5’ end of the sense chain or the sense nucleic acid fragment, and the two ligands are the same or different.
68.根据实施方式53-67任意一项所述的RNA抑制剂,其中所述递送系统缀合于反义链或反义核酸片段的5’末端,且所述配体缀合于正义链或正义核酸片段的5’末端,所述两个配体相同或不同。68. An RNA inhibitor according to any one of embodiments 53-67, wherein the delivery system is conjugated to the 5’ end of the antisense strand or antisense nucleic acid fragment, and the ligand is conjugated to the 5’ end of the sense strand or sense nucleic acid fragment, and the two ligands are the same or different.
69.根据实施方式53-68任意一项所述的RNA抑制剂,其中所述递送系统缀合于反义链或反义核酸片段的3’末端,且所述配体缀合于正义链或正义核酸片段的3’末端,所述两个配体相同或不同。69. An RNA inhibitor according to any one of embodiments 53-68, wherein the delivery system is conjugated to the 3’ end of the antisense chain or the antisense nucleic acid fragment, and the ligand is conjugated to the 3’ end of the sense chain or the sense nucleic acid fragment, and the two ligands are the same or different.
70.根据实施方式53-69任意一项所述的RNA抑制剂,递送系统的数量为1、2、3、4、5或6个。70. According to any one of embodiments 53-69, the number of delivery systems is 1, 2, 3, 4, 5 or 6.
71.根据实施方式53-70任意一项所述的RNA抑制剂,其中所述反义链包含如SEQ ID NO:822-827任意一项所述的序列中连续的至少15个核苷酸。71. An RNA inhibitor according to any one of embodiments 53-70, wherein the antisense chain comprises at least 15 consecutive nucleotides in a sequence as described in any one of SEQ ID NO:822-827.
72.根据实施方式53-71任意一项所述的RNA抑制剂,其中所述正义链包含如SEQ ID NO:618-623任意一项所述的序列中连续的至少15个核苷酸。72. An RNA inhibitor according to any one of embodiments 53-71, wherein the positive strand comprises at least 15 consecutive nucleotides in the sequence described in any one of SEQ ID NO:618-623.
73.根据实施方式53-72任意一项所述的RNA抑制剂,其选自:Z1、Z2、Z3、Z4、Z5、Z6。73. The RNA inhibitor according to any one of embodiments 53-72, which is selected from: Z1, Z2, Z3, Z4, Z5, Z6.
74.药物组合物,其包含实施方式1-73任一项所述的RNA抑制剂,和/或生理上可接受的赋形剂和/或载体和/或稀释剂。74. A pharmaceutical composition comprising the RNA inhibitor according to any one of embodiments 1-73, and/or a physiologically acceptable excipient and/or carrier and/or diluent.
75.根据实施方式74所述的组合物,其特征在于所述药学上可接受的载体包括或选自水性载体、脂质体、高分子聚合物或多肽。75. A composition according to embodiment 74, characterized in that the pharmaceutically acceptable carrier includes or is selected from an aqueous carrier, a liposome, a high molecular polymer or a polypeptide.
76.靶向IGF-1R的RNA抑制剂及其药物组合物在制备治疗IGF-1R相关疾病或病理的药物中的用途;优选的,所述RNA抑制剂为siRNA;更有选的,所述siRNA向有需要的受试者的局部或者病灶区域组织施用。76. Use of an RNA inhibitor targeting IGF-1R and a pharmaceutical composition thereof in the preparation of a drug for treating IGF-1R-related diseases or pathologies; preferably, the RNA inhibitor is siRNA; more preferably, the siRNA is administered to a local or lesion area tissue of a subject in need.
77.根据实施方式76所述的用途,其中所述IGF-1R相关的疾病或病理包括与IGF-1R水平升高相关的疾病或症状。77. The use according to embodiment 76, wherein the IGF-1R-related disease or pathology comprises a disease or symptom associated with elevated IGF-1R levels.
78.根据实施方式76-77任意一项所述的用途,其中所述IGF-1R相关的疾病或病理包括甲状腺眼病,骨性关节炎、神经性疼痛。78. The use according to any one of embodiments 76-77, wherein the IGF-1R related diseases or pathologies include thyroid eye disease, osteoarthritis, and neuropathic pain.
79.根据实施方式76-78任意一项所述的用途,其中所述RNA抑制剂及其药物组合物为实施方式1-73任一项所述的RNA抑制剂或实施方式74-75任一项所述的药物组合物。79. The use according to any one of embodiments 76-78, wherein the RNA inhibitor and the pharmaceutical composition thereof are the RNA inhibitor according to any one of embodiments 1-73 or the pharmaceutical composition according to any one of embodiments 74-75.
80.根据实施方式1-73任一项所述的RNA抑制剂或实施方式74-75任一项所述的药物组合物在制备药物中的用途,所述药物用于预防或治疗疾病或病理或者降低疾病或症状的风险。80. Use of the RNA inhibitor of any one of embodiments 1-73 or the pharmaceutical composition of any one of embodiments 74-75 in the preparation of a medicament for preventing or treating a disease or pathology or reducing the risk of a disease or symptom.
81.根据实施方式80所述的用途,其中所述疾病或病理包括与IGF-1R水平升高相关的疾病或症状。81. The use according to embodiment 80, wherein the disease or pathology comprises a disease or symptom associated with elevated IGF-1R levels.
82.根据实施方式80-81任意一项所述的用途,其中所述疾病或病理包括甲状腺眼病,骨性关节炎、神经性疼痛。82. The use according to any one of embodiments 80-81, wherein the disease or pathology comprises thyroid eye disease, osteoarthritis, neuropathic pain.
83.一种预防或治疗IGF-1R相关疾病或症状的方法,包括向有此需要的受试者施用有效量的RNA抑制剂及其药物组合物。83. A method for preventing or treating an IGF-1R-related disease or symptom, comprising administering an effective amount of an RNA inhibitor and a pharmaceutical composition thereof to a subject in need thereof.
84.根据实施方式83所述的方法,其中所述RNA抑制剂及其药物组合物为实施方式1-73任一项所述的RNA抑制剂或实施方式74-75任一项所述的药物组合物。84. The method according to embodiment 83, wherein the RNA inhibitor and the pharmaceutical composition thereof are the RNA inhibitor described in any one of embodiments 1-73 or the pharmaceutical composition described in any one of embodiments 74-75.
85.根据实施方式83-84所述的方法,其中所述RNA抑制剂、其药学上可接受的盐或所述药物组合物以眶内注射方式、关节内注射方式、鞘内注射方式、皮下方式、静脉内方式、口服、经直肠或腹膜内施加途径向受试者施用。85. The method of embodiments 83-84, wherein the RNA inhibitor, a pharmaceutically acceptable salt thereof, or the pharmaceutical composition is administered to the subject by intraorbital injection, intra-articular injection, intrathecal injection, subcutaneous injection, intravenous injection, oral administration, rectal administration, or intraperitoneal administration.
86.根据实施方式83-85任意一项所述的方法,包括向有需要的受试者的局部或者病灶区域组织施用。86. The method according to any one of embodiments 83-85 comprises administering to a local or focal area tissue of a subject in need thereof.
87.根据实施方式86所述的方法,其中需要的受试者的局部或者病灶区域组织包括眼部组织,关节组织,中枢神经组织,外周神经组织,肿瘤,肝组织,肾组织,肌肉组织,或脂肪组织。87. The method according to embodiment 86, wherein the local or focal area tissue of the subject in need includes eye tissue, joint tissue, central nervous tissue, peripheral nervous tissue, tumor, liver tissue, kidney tissue, muscle tissue, or adipose tissue.
88.根据实施方式87所述的方法,其中,所述眼组织为视神经、小梁网、近管组织、神经节、巩膜外静脉、施累姆氏管或眼部外周组织,优选的,所述的关节组织包含软骨组织,关节结缔组织,骨组织;优选的,所述的中枢神经组织包含脊髓组织,脑组织;优选的,所述的外周神经组织包含关节内神经组织,肌肉神经组织;优选的,脂肪组织包含皮下脂肪组织,内脏脂肪组织。88. The method according to embodiment 87, wherein the eye tissue is an optic nerve, trabecular meshwork, proximal canal tissue, ganglion, episcleral vein, Schlemm's canal or peripheral eye tissue, preferably, the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue; preferably, the central nervous tissue comprises spinal cord tissue and brain tissue; preferably, the peripheral nervous tissue comprises intra-articular nervous tissue and muscle nervous tissue; preferably, the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
89.根据实施方式88所述的方法,其中,所述眼组织为视网膜神经节、内皮细胞、眼外周肌肉或眼外周脂肪。89. A method according to embodiment 88, wherein the eye tissue is retinal ganglion, endothelial cells, peripheral ocular muscle or peripheral ocular fat.
90.根据实施方式83-89任意一项所述的方法,其中所述IGF-1R相关的疾病或病理包括与IGF-1R水平升高相关的疾病或症状。90. The method of any one of embodiments 83-89, wherein the IGF-1R-related disease or pathology comprises a disease or symptom associated with elevated IGF-1R levels.
91.根据实施方式83-90任意一项所述的方法,其中所述IGF-1R相关的疾病或病理包括甲状腺眼病,骨性关节炎、神经性疼痛。91. A method according to any one of embodiments 83-90, wherein the IGF-1R related diseases or pathologies include thyroid eye disease, osteoarthritis, and neuropathic pain.
92.一种用于抑制细胞、组织或受试者中IGF-1R基因表达的方法,其包括向细胞、组织或受试者施用有效量的实施方式1-73任一项所述的RNA抑制剂或实施方式74-75任一项所述的药物组合物。92. A method for inhibiting IGF-1R gene expression in a cell, tissue or subject, comprising administering to the cell, tissue or subject an effective amount of the RNA inhibitor described in any one of embodiments 1-73 or the pharmaceutical composition described in any one of embodiments 74-75.
93.根据实施方式92所述的方法,其中所述疾病或病理包括与IGF-1R水平升高相关的疾病或症状。93. The method of embodiment 92, wherein the disease or pathology comprises a disease or symptom associated with elevated levels of IGF-1R.
94.根据实施方式93所述的方法,其中所述疾病或病理包括甲状腺眼病、骨性关节炎、神经性疼痛。94. A method according to embodiment 93, wherein the disease or pathology includes thyroid eye disease, osteoarthritis, and neuropathic pain.
95.一种预防或治疗疾病或症状的方法,所述方法包括向有此需要的受试者施用有效量的实施方式根据实施方式1-73任一项所述的RNA抑制剂或实施方式74-75任一项所述的药物组合物。95. A method for preventing or treating a disease or symptom, the method comprising administering to a subject in need thereof an effective amount of an RNA inhibitor according to any one of embodiments 1-73 or a pharmaceutical composition according to any one of embodiments 74-75.
96.根据实施方式95所述的方法,其中所述RNA抑制剂、其药学上可接受的盐或所述药物组合物以眶内注射方式、关节内注射方式、鞘内注射方式、皮下方式、静脉内方式、口服、经直肠或腹膜内施加途径向受试者施用。96. A method according to embodiment 95, wherein the RNA inhibitor, its pharmaceutically acceptable salt or the pharmaceutical composition is administered to the subject by intraorbital injection, intra-articular injection, intrathecal injection, subcutaneous injection, intravenous injection, oral administration, rectal administration or intraperitoneal administration.
97.根据实施方式95-96任意一项所述的方法,包括向有需要的受试者的局部或者病灶区域组织施用。97. The method according to any one of embodiments 95-96 comprises administering to a local or focal area tissue of a subject in need thereof.
98.根据实施方式97所述的方法,其中需要的受试者的局部或者病灶区域组织包括眼部组织,关节组织,中枢神经组织,外周神经组织,肿瘤,肝组织,肾组织,肌肉组织,或脂肪组织。98. A method according to embodiment 97, wherein the local or focal area tissue of the subject in need includes eye tissue, joint tissue, central nervous tissue, peripheral nervous tissue, tumor, liver tissue, kidney tissue, muscle tissue, or adipose tissue.
99.根据实施方式98所述的方法,其中,所述眼组织为视神经、小梁网、近管组织、神经节、巩膜外静脉、施累姆氏管或眼部外周组织,优选的,所述的关节组织包含软骨组织,关节结缔组织,骨组织;优选的,所述的中枢神经组织包含脊髓组织,脑组织;优选的,所述的外周神经组织包含关节内神经组织,肌肉神经组织;优选的,脂肪组织包含皮下脂肪组织,内脏脂肪组织。99. The method according to embodiment 98, wherein the eye tissue is an optic nerve, a trabecular meshwork, a proximal canal tissue, a ganglion, an episcleral vein, a Schlemm's canal or peripheral eye tissue, preferably, the joint tissue comprises cartilage tissue, joint connective tissue, and bone tissue; preferably, the central nervous tissue comprises spinal cord tissue and brain tissue; preferably, the peripheral nervous tissue comprises intra-articular nervous tissue and muscle nervous tissue; preferably, the adipose tissue comprises subcutaneous adipose tissue and visceral adipose tissue.
100.根据实施方式99所述的方法,其中,所述眼组织为视网膜神经节、内皮细胞、眼外周肌肉或眼外周脂肪。100. A method according to embodiment 99, wherein the eye tissue is retinal ganglion, endothelial cells, peripheral ocular muscle or peripheral ocular fat.
实施例Example
实施例1 siRNA分子的设计与合成Example 1 Design and synthesis of siRNA molecules
获取IGF-1R基因人源转录本(来源NCBI网站,转录本号:NM_000875.5),根据人IGF-1R mRNA的全长区域(包含5’-UTR,CDS,3’-UTR)设计靶向IGF-1R基因的siRNA原始序列。The human transcript of the IGF-1R gene was obtained (from the NCBI website, transcript number: NM_000875.5), and the original sequence of siRNA targeting the IGF-1R gene was designed based on the full-length region of human IGF-1R mRNA (including 5’-UTR, CDS, and 3’-UTR).
按照亚磷酰胺固相合成技术合成寡核糖核苷酸。在通用可控多孔玻璃CPG上进行合成。所有的2’-修饰的RNA亚磷酰胺和辅助试剂均为商品化可得试剂。所有的亚磷酰胺溶于无水乙腈中并且加入分子筛,使用5-乙基硫-1H-四唑作为活化剂的偶合时间为1.0分钟。使用50mM 3-((二甲基氨基-亚甲基)氨基)-3H-1,2,4-二噻唑-3-硫酮的无水乙腈/吡啶(v/v=1/1)溶液产生硫代磷酸酯键,反应时间1.8分钟。所有序列在最后脱除DMT基团后即合成。Oligoribonucleotides were synthesized using the phosphoramidite solid phase synthesis technique. The synthesis was performed on universal controlled pore glass (CPG). All 2'-modified RNA phosphoramidites and auxiliary reagents were commercially available reagents. All phosphoramidites were dissolved in anhydrous acetonitrile and molecular sieves were added. The coupling time was 1.0 min using 5-ethylthio-1H-tetrazole as an activator. A 50 mM solution of 3-((dimethylamino-methylene)amino)-3H-1,2,4-dithiazole-3-thione in anhydrous acetonitrile/pyridine (v/v = 1/1) was used to generate phosphorothioate bonds. The reaction time was 1.8 min. All sequences were synthesized after the final removal of the DMT group.
CPG上结合的低聚体的切割和去保护:在固相合成终止后,通过用含20%二乙胺的乙腈溶液处理30分钟去除保护基,而没有从CPG上切下寡核苷酸。随后,干燥的CPG在40摄氏度度下用浓氨水处理18小时。在离心之后,上清液被转移至新的管中并且用氨水洗涤CPG。浓缩合并的溶液得到固体混合物。Cleavage and deprotection of oligomers bound to CPG: After termination of solid phase synthesis, the protecting groups were removed by treatment with acetonitrile solution containing 20% diethylamine for 30 minutes without cutting the oligonucleotide from CPG. Subsequently, the dried CPG was treated with concentrated ammonia for 18 hours at 40 degrees Celsius. After centrifugation, the supernatant was transferred to a new tube and the CPG was washed with ammonia. The combined solution was concentrated to obtain a solid mixture.
单链寡核糖核苷酸的纯化:通过使用NanoQ阴离子交换经HPLC纯化的低聚体。缓冲液A是10mM高氯酸钠溶液,20mM Tris,1mM EDTA,pH 7.4和含有乙腈20%,以及缓冲液B,500mM高氯酸钠,20mM Tris,1mM EDTA,pH7.4和含有乙腈20%。分离得到目标产物,并用反相C18柱脱盐。Purification of single-stranded oligoribonucleotides: Oligomers were purified by HPLC using NanoQ anion exchange. Buffer A was 10 mM sodium perchlorate solution, 20 mM Tris, 1 mM EDTA, pH 7.4 and contained 20% acetonitrile, and buffer B was 500 mM sodium perchlorate, 20 mM Tris, 1 mM EDTA, pH 7.4 and contained 20% acetonitrile. The desired product was isolated and desalted using a reverse phase C18 column.
单链寡核糖核苷酸的退火产生siRNA:把待退火的单链寡核糖核苷酸用无菌无RNA酶水配制成200μM。如下设置退火反应体系,将总体积为100μL的混合液,10nmol放置95℃水浴锅10分钟(≥100nmol需求量需要高温20分钟)→迅速放入60℃水浴,自然降温→退火完成后的溶液不可放置在高温中储存。通过合并等摩尔的单链寡核糖核苷酸溶液形成互补链。未修饰的siRNA序列如表1所示。Annealing of single-stranded oligoribonucleotides to produce siRNA: The single-stranded oligoribonucleotides to be annealed are prepared into 200μM with sterile RNase-free water. The annealing reaction system is set up as follows: a total volume of 100μL of the mixture, 10nmol, is placed in a 95℃ water bath for 10 minutes (≥100nmol requires high temperature for 20 minutes) → quickly placed in a 60℃ water bath, cooled naturally → the solution after annealing is not stored at high temperature. Complementary chains are formed by combining equimolar single-stranded oligoribonucleotide solutions. The unmodified siRNA sequence is shown in Table 1.
对siRNA双链体进行序列修饰优化,其中,小写字母“g”、“c、“a”和“u”表示2’-甲氧基修饰的核苷酸;大写字母“Gf”、“Cf”、“Af”和“Uf”表示2’-氟代修饰的核苷酸;*表示与*左右相邻的两个单体(如两个核苷酸)之间为硫代磷酸酯基连接。The siRNA duplex was subjected to sequence modification optimization, wherein lowercase letters "g", "c", "a" and "u" represent 2'-methoxy-modified nucleotides; uppercase letters "Gf", "Cf", "Af" and "Uf" represent 2'-fluoro-modified nucleotides; * represents that the two monomers (such as two nucleotides) adjacent to the left and right of * are connected by a phosphorothioate group.
invAB指在核苷酸的5’端或者3’端键合连接反置的无碱基核苷酸。invAB refers to an abasic nucleotide with an inverted linkage at the 5' or 3' end of the nucleotide.
在本发明中,(M06)是M06单体的残基。在某些实施方式中,(M06)是通过键合连接到核苷酸的。In the present invention, (M06) It is M06 monomer In certain embodiments, (M06) is represented by Bonded to a nucleotide.
在某些实施方式中,[D02]是通过键合连接到核苷酸的。In certain embodiments, [D02] is through Bonded to a nucleotide.
修饰后siRNA序列如表2所示。The modified siRNA sequences are shown in Table 2.
实施例2化学修饰后的双链体siRNA在SY5Y细胞上的体外效果检测Example 2 In vitro effect detection of chemically modified duplex siRNA on SY5Y cells
根据实施例1挑选出的双链体siRNA进一步验证其在SY5Y细胞上的体外抑制效果。The duplex siRNA selected according to Example 1 was further verified for its in vitro inhibitory effect on SY5Y cells.
1)SY5Y细胞转染1) SY5Y cell transfection
SY5Y细胞在含10%胎牛血清、1%谷氨酰胺、1%NEAA、1%青霉素-链霉素的DMEM培养基中,于5%CO2、37℃恒温培养箱中培养,待细胞处于对数生长期且状态良好时进行转染。接种SY5Y细胞到96孔细胞板,铺板,按照说明书要求,将siRNA用RNAiMAX转染进入细胞中。本次测试中siRNA终浓度为30nM和0.1nM。同时设置含RNAiMAX的无化合物对照组。SY5Y cells were cultured in DMEM medium containing 10% fetal bovine serum, 1% glutamine, 1% NEAA, and 1% penicillin-streptomycin in a 5% CO2, 37°C constant temperature incubator, and transfected when the cells were in the logarithmic growth phase and in good condition. SY5Y cells were inoculated into 96-well cell plates, plated, and siRNA was transfected into the cells using RNAiMAX according to the instructions. The final concentrations of siRNA in this test were 30nM and 0.1nM. A compound-free control group containing RNAiMAX was also set up.
2)RNA提取及反转录2) RNA extraction and reverse transcription
转染24小时后,去除培养基并收集细胞用于RNA提取。根据试剂盒说明书使用96Kit(QIAGEN-74182)提取总RNA。根据说明书使用FastKing RT Kit(With gDNase)(Tiangen-KR116-02)合成cDNA。24 hours after transfection, remove the culture medium and collect the cells for RNA extraction. Use according to the kit instructions. Total RNA was extracted using 96 Kit (QIAGEN-74182), and cDNA was synthesized using FastKing RT Kit (With gDNase) (Tiangen-KR116-02) according to the instruction manual.
3)qPCR检测靶标基因mRNA表达水平3) qPCR detection of target gene mRNA expression level
靶标cDNA 将通过SYBR Green qPCR进行检测,同时检测GAPDH cDNA作为内部对照进行平行检测。在384孔中加入8μL配置好的PCR反应液和2μL样本cDNA。qPCR反应程序为:50℃加热2min,95℃加热10min然后进入循环模式,95℃加热15sec,随后在60℃下1min,共40个循环。The target cDNA will be detected by SYBR Green qPCR, and GAPDH cDNA will be detected in parallel as an internal control. 8μL of the prepared PCR reaction solution and 2μL of sample cDNA are added to the 384 wells. The qPCR reaction program is: heating at 50℃ for 2min, heating at 95℃ for 10min and then entering the cycle mode, heating at 95℃ for 15sec, followed by 1min at 60℃, for a total of 40 cycles.
4)结果分析4) Result analysis
每个样品靶标基因mRNA的表达水平通过ΔΔCt相对定量法进行计算。目的基因相对量使用2-ΔΔCT表示。The expression level of target gene mRNA in each sample was calculated by ΔΔCt relative quantification method. The relative amount of target gene was expressed as 2-ΔΔCT.
计算公式如下:The calculation formula is as follows:
ΔCT=目的基因平均Ct值-内参基因平均Ct值ΔCT = average Ct value of target gene - average Ct value of reference gene
ΔΔCT=ΔCT(加药组)-ΔCT(RNAiMAX对照组)ΔΔCT=ΔCT(drug-added group)-ΔCT(RNAiMAX control group)
靶基因IGF-1R相对表达量=2-ΔΔCTRelative expression of target gene IGF-1R = 2-ΔΔCT
IGF-1R抑制率%=(1-value of sample/Ave.value of RNAiMAX Control)*100IGF-1R inhibition rate % = (1-value of sample/Ave.value of RNAiMAX Control)*100
结果如表3所示。The results are shown in Table 3.
表3双链体siRNA在SY5Y上的抑制结果(百分抑制率) Table 3 Inhibition results of duplex siRNA on SY5Y (percent inhibition rate)
结果表明,上述双链siRNA可以显著在SY5Y细胞中抑制IGF-1R mRNA的水平。The results showed that the above double-stranded siRNA could significantly inhibit the level of IGF-1R mRNA in SY5Y cells.
实施例3化学修饰后的双链体siRNA在Hela细胞上的体外效果检测Example 3 In vitro effect detection of chemically modified duplex siRNA on Hela cells
根据实施例1挑选出的双链体siRNA进一步验证其在Hela细胞上的体外抑制效果。The duplex siRNA selected according to Example 1 was further verified for its in vitro inhibitory effect on Hela cells.
1)Hela细胞转染1) Hela cell transfection
Hela细胞在含10%胎牛血清和1%青霉素-链霉素的DMEM培养基中,于5%CO2、37℃恒温培养箱中培养,待细胞处于对数生长期且状态良好时进行转染。接种Hela细胞到96孔细胞板,铺板,按照说明书要求,通过lipofectamine RNAiMAX和Opti-MEM转染双链siRNA到Hela细胞中。本次测试中siRNA终浓度为30nM、5nM、0.5nM。Hela cells were cultured in DMEM medium containing 10% fetal bovine serum and 1% penicillin-streptomycin in a 5% CO2, 37°C constant temperature incubator, and transfected when the cells were in the logarithmic growth phase and in good condition. Hela cells were inoculated into 96-well cell plates, plated, and double-stranded siRNA was transfected into Hela cells using lipofectamine RNAiMAX and Opti-MEM according to the instructions. The final concentrations of siRNA in this test were 30nM, 5nM, and 0.5nM.
2)RNA提取、反转录及qPCR2) RNA extraction, reverse transcription and qPCR
根据试剂盒说明书使E-Z 96Total RNA Kit(Omega,R1034-02)提取总RNA。根据说明书使用FastKing RT Kit(With gDNase)(Tiangen-KR116-02)合成cDNA。Total RNA was extracted using E-Z 96 Total RNA Kit (Omega, R1034-02) according to the kit instructions. cDNA was synthesized using FastKing RT Kit (With gDNase) (Tiangen-KR116-02) according to the instructions.
3)qPCR检测靶标基因mRNA表达水平3) qPCR detection of target gene mRNA expression level
实验步骤同实施例2。The experimental steps are the same as in Example 2.
4)结果分析4) Result analysis
实验结果分析过程同实施例2。The experimental result analysis process is the same as that of Example 2.
结果如表4所示。The results are shown in Table 4.
表4双链体siRNA在Hela上的抑制结果(百分抑制率) Table 4 Inhibition results of duplex siRNA on Hela (percent inhibition rate)
结果表明,上述双链siRNA可以显著在Hela细胞中抑制IGF-1R mRNA的水平。The results showed that the above double-stranded siRNA could significantly inhibit the level of IGF-1R mRNA in Hela cells.
实施例4化学修饰后的双链体siRNA在ARPE细胞上的体外效果检测Example 4 In vitro effect detection of chemically modified duplex siRNA on ARPE cells
根据实施例1挑选出的双链体siRNA进一步验证其在ARPE细胞上的体外抑制效果。The duplex siRNA selected according to Example 1 was further verified for its in vitro inhibitory effect on ARPE cells.
1)ARPE细胞转染1) ARPE cell transfection
ARPE-19细胞在含10%胎牛血清的DMEM培养基中,于5%CO2、37℃恒温培养箱中培养,待细胞处于对数生长期且状态良好时进行转染。接种ARPE-19细胞到96孔细胞板,铺板,按照说明书要求,通过lipofectamine RNAiMAX和Opti-MEM转染双链siRNA到Hela细胞中。本次测试中siRNA终浓度为30nM、0.5nM、0.05nM。ARPE-19 cells were cultured in DMEM medium containing 10% fetal bovine serum in a 5% CO2, 37°C constant temperature incubator, and transfected when the cells were in the logarithmic growth phase and in good condition. ARPE-19 cells were inoculated into 96-well cell plates, plated, and double-stranded siRNA was transfected into Hela cells using lipofectamine RNAiMAX and Opti-MEM according to the instructions. The final concentrations of siRNA in this test were 30nM, 0.5nM, and 0.05nM.
2)RNA提取、反转录及qPCR2) RNA extraction, reverse transcription and qPCR
实验步骤同实施例2。The experimental steps are the same as in Example 2.
3)qPCR检测靶标基因mRNA表达水平3) qPCR detection of target gene mRNA expression level
实验步骤同实施例2。The experimental steps are the same as in Example 2.
4)结果分析4) Result analysis
实验结果分析过程同实施例2。The experimental result analysis process is the same as that of Example 2.
结果如表5所示。The results are shown in Table 5.
表5双链体siRNA在ARPE上的抑制结果(百分抑制率) Table 5 Inhibition results of duplex siRNA on ARPE (percent inhibition rate)
结果表明,上述双链siRNA可以显著在ARPE细胞中抑制IGF-1R mRNA的水平。The results showed that the above double-stranded siRNA could significantly inhibit the level of IGF-1R mRNA in ARPE cells.
实施例5化学修饰后的双链体siRNA在人原代成熟脂肪细胞上的IC50检测Example 5 IC 50 Detection of Chemically Modified Duplex siRNA in Primary Human Mature Adipocytes
根据实施例1挑选出的双链体siRNA进一步验证其在成熟的人脂肪细胞上的IC50效果。The duplex siRNA selected according to Example 1 was further verified for its IC50 effect on mature human adipocytes.
5)人原代成熟脂肪细胞转染5) Transfection of primary human mature adipocytes
人原代成熟脂肪细胞在脂肪细胞专用培养基中,于5%CO2、37℃恒温培养箱中培养,待细胞处于对数生长期且状态良好时进行转染。接种成熟脂肪细胞到24孔细胞板,铺板,按照说明书要求,通过lipofectamine RNAiMAX和Opti-MEM转染双链siRNA到成熟脂肪细胞中。Primary human mature adipocytes were cultured in a 5% CO 2 , 37°C constant temperature incubator in a special adipocyte culture medium, and transfected when the cells were in the logarithmic growth phase and in good condition. Mature adipocytes were inoculated into 24-well cell plates, plated, and double-stranded siRNA was transfected into mature adipocytes using lipofectamine RNAiMAX and Opti-MEM according to the instructions.
6)RNA提取、反转录及qPCR6) RNA extraction, reverse transcription and qPCR
实验步骤同实施例2。The experimental steps are the same as in Example 2.
7)qPCR检测靶标基因mRNA表达水平7) qPCR detection of target gene mRNA expression level
实验步骤同实施例2。The experimental steps are the same as in Example 2.
8)结果分析8) Result analysis
结果如表6所示。The results are shown in Table 6.
表6双链体siRNA在人原代成熟脂肪细胞上的抑制结果 Table 6 Inhibition results of duplex siRNA on primary mature human adipocytes
结果表明,上述双链siRNA可以显著在人原代成熟脂肪细胞中抑制IGF-1R mRNA的水平。The results showed that the above double-stranded siRNA can significantly inhibit the level of IGF-1R mRNA in human primary mature adipocytes.
实施例6食蟹猴眶内给药PD研究Example 6 PD study of intraorbital administration in cynomolgus monkeys
分组设计Group design
六只雌性食蟹猴分为两组。在给药前对左眼进行活检,采集少量眼肌和球周脂肪。采集到的样本分开置于含0.5mL RNAlater的均质管中(2管眼肌,1管脂肪),2℃–8℃冰箱放置约22-26小时,而后将RNAlater完全移除。含组织的均质管暂存干冰速冻,再放置在<-60℃冰箱里。试验第一天,左眼给予PBS,右眼给予不同剂量(2mg/kg,10mg/kg)的供试品Z4。Six female cynomolgus monkeys were divided into two groups. Before administration, a biopsy was performed on the left eye to collect a small amount of eye muscle and periorbital fat. The collected samples were placed separately in homogenized tubes containing 0.5 mL of RNAlater (2 tubes of eye muscle and 1 tube of fat), and placed in a refrigerator at 2°C–8°C for about 22-26 hours, after which the RNAlater was completely removed. The homogenized tubes containing the tissues were temporarily stored on dry ice for quick freezing and then placed in a refrigerator at <-60°C. On the first day of the experiment, PBS was administered to the left eye, and different doses (2 mg/kg, 10 mg/kg) of the test article Z4 were administered to the right eye.
试验程序Test Procedure
1临床观察1 Clinical observation
所有动物在试验前至少进行一次详细临床观察,给药后2天、7天、14天、21天和28天各进行一次详细临床观察。All animals underwent detailed clinical observation at least once before the experiment and once each on days 2, 7, 14, 21, and 28 after administration.
2体重2 weight
所有动物在试验前至少称重一次,在第28天或计划剖检当天称重一次。All animals were weighed at least once before the experiment and once on day 28 or on the day of planned necropsy.
3眼科学检查3. Ophthalmological examination
所有动物在试验前至少进行一次眼科学检查,给药后2天、7天、14天、21天和28天各进行一次眼科学检查。All animals underwent ophthalmological examination at least once before the experiment and once on days 2, 7, 14, 21, and 28 after administration.
4眼压4. Intraocular pressure
开始给药前使用TonoVet眼压计测量所有动物的双眼眼压(IOP),给药后2天、7天各进行一次。The intraocular pressure (IOP) of both eyes of all animals was measured using a TonoVet tonometer before the start of drug administration and once on days 2 and 7 after drug administration.
5眼底照相(FP)5 Fundus Photography (FP)
试验前和第4周分别对所有动物的双眼至少进行一次眼底照相(FP)检查,采集图片。Fundus photography (FP) was performed on both eyes of all animals at least once before the experiment and at the 4th week, and pictures were collected.
6闪光视觉诱发电位(fVEP)6Flash visual evoked potential (fVEP)
在第4周对所有动物双眼进行一次fVEP检查。动物将通过肌肉注射氯胺酮(10-30mg/kg)和塞拉嗪(0.5to 1.0mg/kg)进行麻醉。用适当的散瞳剂对动物进行散瞳。闪光VEP参照以下步骤实施:All animals will be anesthetized with an intramuscular injection of ketamine (10-30 mg/kg) and xylazine (0.5 to 1.0 mg/kg). The animal's pupils will be dilated with an appropriate mydriatic. Flash VEP is performed as follows:
选择FVEP协议,输入动物信息;Select the FVEP protocol and enter the animal information;
将动物俯卧放置于升降台,连接相关电极;Place the animal prone on a lifting platform and connect relevant electrodes;
检查各电极电阻,符合要求后点击开始,收集电生理信号;Check the resistance of each electrode. If it meets the requirements, click Start to collect electrophysiological signals.
对检查结果进行判断后,保存检查报告。After judging the inspection results, save the inspection report.
7细胞因子分析7 Cytokine Analysis
所有可用动物进行血样采集,用于血清中细胞因子分析。采集时间点为给药前、给药后24小时各一次。将采用已确证的流式细胞术方法分析血清中IL-2、IL-4、IL-5、IL-6、IL-10、IL-13、TNF-α和IFN-γ的细胞因子水平。Blood samples will be collected from all available animals for analysis of cytokines in serum. The collection time points are once before administration and once 24 hours after administration. The cytokine levels of IL-2, IL-4, IL-5, IL-6, IL-10, IL-13, TNF-α and IFN-γ in serum will be analyzed using a validated flow cytometry method.
终点解剖End point anatomy
在第29天对所有实验动物进行安乐死,采集组织。在组织取材过程中,对眼球、眼肌(包括上直肌,上斜肌,内直肌,外直肌,下斜肌和下直肌)和球周脂肪进行大体观察。All experimental animals were euthanized on day 29 and tissues were collected. During the tissue collection process, the eyeball, eye muscles (including superior rectus, superior oblique, medial rectus, lateral rectus, inferior oblique and inferior rectus) and periorbital fat were grossly observed.
对所有实验动物,采集双眼的眼肌(包括上直肌,上斜肌,内直肌,外直肌,下斜肌和下直肌),球周脂肪。For all experimental animals, ocular muscles (including superior rectus, superior oblique, medial rectus, lateral rectus, inferior oblique and inferior rectus) and periorbital fat were collected from both eyes.
IGF1R mRNA QPCR分析IGF1R mRNA QPCR analysis
使用染料方法通过RT-qPCR在食蟹猴组织中检测IGF1R的mRNA表达。将检测目标基因(IGF1R)和内参基因(CypA)的CT值,计算目的基因的表达变化。组织种类包括:眼周肌肉,眼周脂肪。The mRNA expression of IGF1R was detected in cynomolgus monkey tissues by RT-qPCR using the dye method. The CT values of the target gene (IGF1R) and the reference gene (CypA) were detected to calculate the expression changes of the target gene. Tissue types included: periocular muscle and periocular fat.
1关键引物试剂 1Key primer reagents
2关键设备2 Key Equipment
qPCR热循环仪、PCR热循环仪、生物安全柜、均质仪、冷冻研磨仪、电子天平qPCR thermal cycler, PCR thermal cycler, biological safety cabinet, homogenizer, cryo-grinder, electronic balance
CyBio-SELMA液体处理工作站、紫外分光光度计、TECAN液体处理工作站CyBio-SELMA liquid handling workstation, UV spectrophotometer, TECAN liquid handling workstation
3RNA 提取3RNA extraction
每份组织样本分别加入1000μL TRNzol Universal RNA Reagent,再加入3个研磨珠(3mm)。均质仪程序设置为:65Hz,45s/循环,4循环,循环间停留30s(或5.65米/s,1min/循环,3循环,循环间停留30s),得到组织裂解液。每份组织裂解液离心(离心条件:室温,12000×g,5min),离心后转移所有上清至新的Ep管中。室温孵育5分钟,使核蛋白复合物完全解离。每组织裂解液分别加入200μL三氯甲烷,涡旋混匀,瞬离,室温孵育3min。进行离心(离心条件:4℃,12000×g,5min)。离心后组织裂解液分为上中下三层水相,每份分别转移450μL上层水相至新Ep管中。每份加入45μL 3M Sodium Acetate Sol pH 5.2,涡旋混匀,室温孵育1min。孵育后分别加入500μL异丙醇(已低温预冷),涡旋混匀,-30℃~-10℃孵育30min。孵育结束后,进行离心(离心条件:4℃,12000×g,15min),离心结束后管底可见RNA 沉淀,弃上清。弃上清后,分别加入1000μL 75%乙醇溶液(已低温预冷),漩涡混匀,进行离心(离心条件:4℃,12000×g,10min)。离心后,弃上清,室温风干10min,再分别加入40μL DEPC-处理水(已55℃预热),涡旋混匀,得到RNA。使用紫外分光光度计检测A260/A280得到纯度和浓度并进行记录。RNA可直接进行RT-qPCR,或者保存于<-60℃。RNA失效期为1年。1000μL TRNzol Universal RNA Reagent was added to each tissue sample, followed by 3 grinding beads (3mm). The homogenizer program was set to: 65Hz, 45s/cycle, 4 cycles, 30s between cycles (or 5.65m/s, 1min/cycle, 3 cycles, 30s between cycles) to obtain tissue lysate. Each tissue lysate was centrifuged (centrifugation conditions: room temperature, 12000×g, 5min), and all supernatants were transferred to new Ep tubes after centrifugation. Incubate at room temperature for 5 minutes to completely dissociate the nucleoprotein complex. 200μL chloroform was added to each tissue lysate, vortexed to mix, centrifuged instantly, and incubated at room temperature for 3min. Centrifugation was performed (centrifugation conditions: 4℃, 12000×g, 5min). After centrifugation, the tissue lysate was divided into three layers of water phase: upper, middle, and lower. 450μL of the upper water phase was transferred to a new Ep tube for each portion. Add 45μL 3M Sodium Acetate Sol pH 5.2 to each portion, vortex to mix, and incubate at room temperature for 1 min. After incubation, add 500μL isopropanol (pre-cooled at low temperature), vortex to mix, and incubate at -30℃~-10℃ for 30min. After the incubation, centrifuge (centrifugation conditions: 4℃, 12000×g, 15min). After the centrifugation, RNA precipitation can be seen at the bottom of the tube, and the supernatant is discarded. After discarding the supernatant, add 1000μL 75% ethanol solution (pre-cooled at low temperature), vortex to mix, and centrifuge (centrifugation conditions: 4℃, 12000×g, 10min). After centrifugation, discard the supernatant, air-dry at room temperature for 10min, then add 40μL DEPC-treated water (pre-heated at 55℃), vortex to mix, and obtain RNA. Use a UV spectrophotometer to detect A260/A280 to obtain purity and concentration and record them. RNA can be directly used for RT-qPCR or stored at <-60°C. The expiration date of RNA is 1 year.
4QPCR分析4QPCR analysis
RNA经基因组DNA去除程序运行,得到“RNA模板(去除DNA后),再经”PCR热循环仪程序运行,得到cDNA产物,作为“qPCR模板”。所有cDNA样品使用384孔板进行qPCR检测,均三复孔分析。相对表达数据将通过QuantStudio7 Flex PCR采集,采集数据包括:Ct平均值,ΔCt,ΔΔCt。所有IGF1R mRNA KD%经过与活检样品归一化计算得到。The RNA was run through the genomic DNA removal program to obtain the "RNA template (after removing DNA), and then run through the "PCR thermal cycler program to obtain the cDNA product as the "qPCR template". All cDNA samples were tested by qPCR using a 384-well plate, and all were analyzed in triplicate. Relative expression data will be collected using QuantStudio7 Flex PCR, and the collected data include: Ct average, ΔCt, ΔΔCt. All IGF1R mRNA KD% was calculated after normalization with the biopsy sample.
实验结果:Experimental results:
1.临床观察,体重,眼压,眼底照相,闪光视觉诱发电位(fVEP),细胞因子分析未见异常;1. Clinical observation, body weight, intraocular pressure, fundus photography, flash visual evoked potential (fVEP), and cytokine analysis showed no abnormalities;
2.KD%实验结果:如图1所示。2. KD% experimental results: as shown in Figure 1.
实验结论:双链化合物Z4眼眶给药具有很好的安全性,并显著抑制靶组织IGF1R mRNA表达。Experimental conclusion: The double-chain compound Z4 has good safety when administered intraorbitally and significantly inhibits the expression of IGF1R mRNA in target tissues.
实施例例7:小鼠急性突眼模型Example 7: Acute exophthalmos model in mice
目的:评估经眼眶给药的mouse IGF1R siRNA Z8,Z9在BALB/c小鼠甲状腺眼病模型中的药效。Objective: To evaluate the efficacy of mouse IGF1R siRNA Z8, Z9 delivered intraorbitally in the BALB/c mouse thyroid eye disease model.
1分组给药方案1 Group dosing regimen
Day-5,动物使用舒泰(25-50mg/kg,i.p.)和盐酸赛拉嗪(5mg/kg,i.p.)麻醉后,双眼眼眶单次注射mouse IGF1R siRNA,100μL/眼。On Day 5, after the animals were anesthetized with Zotal (25-50 mg/kg, i.p.) and Xylazine Hydrochloride (5 mg/kg, i.p.), a single injection of mouse IGF1R siRNA was given into both eye orbits, 100 μL/eye.
2造模2 Modeling
Day 0和Day 6,动物使用舒泰(25-50mg/kg,i.p.)和盐酸赛拉嗪(5mg/kg,i.p.)麻醉后,双眼眼周注射mouse IGF-1蛋白进行造模,5μg/眼,注射后动物双眼用左氧氟沙星滴眼液和氧氟沙星眼膏护理,上午下午各一次,连续三天。On Day 0 and Day 6, the animals were anesthetized with Zotal (25-50 mg/kg, i.p.) and Xylazine Hydrochloride (5 mg/kg, i.p.), and mouse IGF-1 protein was injected periocularly in both eyes for modeling, 5 μg/eye. After injection, both eyes of the animals were cared for with levofloxacin eye drops and ofloxacin eye ointment, once in the morning and once in the afternoon, for three consecutive days.
3 检测指标3. Testing indicators
3.1 临床观察3.1 Clinical observation
每天1次,笼旁观察动物情况、精神状态、行为活动、进食等。Observe the animal's condition, mental state, behavioral activities, eating habits, etc. once a day beside the cage.
3.2 GO(Graves'Ophthalmopathy)评分3.2 GO (Graves' Ophthalmopathy) score
Day 0(造模前)、Day 3、Day 6(造模前)和Day 9进行GO评分,持续性观察眼凸症状。GO scores were performed on Day 0 (before modeling), Day 3, Day 6 (before modeling), and Day 9, and the symptoms of bulging eyes were continuously observed.
3.3眼部检查3.3 Eye examination
Day-5(给药前、后)、Day 0、Day 3、Day 7和Day 14,使用裂隙灯进行眼表和眼底检查。若有异常进行拍照记录。Ocular surface and fundus examinations were performed using a slit lamp on Day-5 (before and after administration), Day 0, Day 3, Day 7, and Day 14. Any abnormalities were recorded by photograph.
3.4取材3.4 Collection of materials
Day 9,每组各取4只动物进行安乐死,分离眶周组织、视网膜、巩膜复合体、肝脏、骨骼肌、卵巢脂肪立即保存于RNAprotect tissue Reagent保存液中。On Day 9, 4 animals from each group were euthanized, and the periorbital tissue, retina, sclera complex, liver, skeletal muscle, and ovarian fat were isolated and immediately stored in RNAprotect tissue Reagent preservation solution.
3.5 qPCR检测3.5 qPCR detection
眶周组织提取RNA,进行逆转录和QPCR分析。RNA was extracted from periorbital tissues and subjected to reverse transcription and QPCR analysis.
3.6病理3.6 Pathology
Day 9,每组各取4只小鼠眼球(附带眼周组织)进行固定、石蜡包埋,量化眼周组织增生和细胞浸润(H&E染色、UCPI和CD3染色)。On Day 9, eyeballs (with periocular tissues) of 4 mice were collected from each group for fixation and paraffin embedding, and the proliferation and cell infiltration of periocular tissues were quantified (H&E staining, UCPI and CD3 staining).
眶内给予mouse IGF1R siRNA可以显著抑制IGF1R mRNA的表达,同时缓解突眼症状,提示在人体上眶内给予本发明中涉及的化合物可以有效治疗甲状腺眼病。Intraorbital administration of mouse IGF1R siRNA can significantly inhibit the expression of IGF1R mRNA and relieve the symptoms of exophthalmos, indicating that intraorbital administration of the compounds involved in the present invention can effectively treat thyroid eye disease.
实验例7:大鼠手术诱导的骨关节炎模型Experimental Example 7: Rat surgically induced osteoarthritis model
出生后10周,24只大鼠接受前交叉韧带、内侧副韧带和内侧半月板髁韧带的切断手术(前交叉韧带断裂和部分内侧半月板切除模型;ACLT+pMMx)。手术后1周,所有大鼠被随机分配,接受关节腔内注射mouse IGF1R siRNA Z8,Z9或对照溶液(每组12只大鼠)。手术后13周,膝关节被分离,固定在10%福尔马林中,脱钙后嵌入石蜡块中。取自不同水平的前部切片(厚度5μm,每个切片间隔100μm,确保重复性),并用番红固绿染色。每只大鼠取至少12个切片,并使用光学显微镜进行成像。At 10 weeks after birth, 24 rats underwent surgical transection of the anterior cruciate ligament, medial collateral ligament, and medial meniscocondylar ligament (ACLT+pMMx model). One week after surgery, all rats were randomly assigned to receive intra-articular injection of mouse IGF1R siRNA Z8, Z9, or control solution (12 rats per group). 13 weeks after surgery, the knee joints were isolated, fixed in 10% formalin, decalcified, and embedded in paraffin blocks. Sections from the anterior part (5 μm thickness, 100 μm interval between each section to ensure reproducibility) were taken at different levels and stained with safranin fast green. At least 12 sections were taken from each rat and imaged using a light microscope.
骨关节炎研究学会国际组织(OARSI)评分、软骨保护与再生Osteoarthritis Research Society International (OARSI) score, cartilage protection and regeneration
组织学评估由两名盲法观察者进行。根据OARSI软骨组织学评分系统对图像进行评分,通过评估软骨损伤的程度(软骨损伤的深度)和阶段(关节受累的程度)来评分。简要地说,股骨和胫骨分开评估,每个部位根据软骨损伤的等级(0–6分,0为完整表面,6为严重变形)和软骨损伤的阶段(0–4分,0为正常关节,4为超过50%的关节损伤)进行打分。总分为等级与阶段的乘积(0代表正常关节;24代表严重的骨关节炎)。每只大鼠取12个切片进行评分,且未排除任何大鼠。在评分后,研究揭盲,并排除每只大鼠四个最低评分的切片(代表软骨损伤最轻的部分)用于进一步分析。每只大鼠的平均OARSI评分为两名盲法观察者评分的平均值。此外,基于修订的客观定量组织学OARSI评分系统,四名独立盲法观察者重复进行组织学评估。使用ImageJ测量Safranin O染色强度和软骨厚度。Histological evaluation was performed by two blinded observers. Images were scored according to the OARSI cartilage histological scoring system by assessing the extent of cartilage damage (depth of cartilage damage) and stage (extent of joint involvement). Briefly, femurs and tibiae were evaluated separately, and each site was scored according to the grade of cartilage damage (0–6 points, 0 is intact surface and 6 is severe deformation) and the stage of cartilage damage (0–4 points, 0 is normal joint and 4 is more than 50% joint damage). The total score was the product of grade and stage (0 represents normal joint; 24 represents severe osteoarthritis). Twelve sections were scored for each rat, and no rats were excluded. After scoring, the study was unblinded, and the four lowest-scoring sections (representing the least cartilage damage) of each rat were excluded for further analysis. The mean OARSI score for each rat was the average of the scores of the two blinded observers. In addition, four independent blinded observers repeated the histological evaluation based on the revised objective quantitative histological OARSI scoring system. Safranin O staining intensity and cartilage thickness were measured using ImageJ.
关节内给予mouse IGF1R siRNA可以显著抑制IGF1R mRNA的表达,同时降低OARSI评分,提示在人体上关节内给予本发明中涉及的化合物可以有效治疗骨性关节炎。Intra-articular administration of mouse IGF1R siRNA can significantly inhibit the expression of IGF1R mRNA and reduce the OARSI score, indicating that intra-articular administration of the compounds involved in the present invention can effectively treat osteoarthritis in humans.
实施例8:脊神经结扎(SNL)模型Example 8: Spinal Nerve Ligation (SNL) Model
动物首先使用5%异氟烷麻醉,并保持在2%异氟烷浓度下。去除L5横突以暴露L3和L4脊神经。然后分离L4脊神经,并用6-0丝线紧密结扎。对于假手术组,暴露L4脊神经,但不进行结扎。在异氟烷麻醉下,通过腰椎穿刺注射mouse IGF1R siRNA Z8,Z9或对照溶液,并进行后续行为测试。Animals were first anesthetized with 5% isoflurane and maintained at 2% isoflurane concentration. The L5 transverse process was removed to expose the L3 and L4 spinal nerves. The L4 spinal nerve was then isolated and tightly ligated with 6-0 silk suture. For the sham group, the L4 spinal nerve was exposed but not ligated. Under isoflurane anesthesia, mouse IGF1R siRNA Z8, Z9 or control solution was injected by lumbar puncture and subsequent behavioral tests were performed.
行为测试Behavioral testing
50%足掌缩回机械阈值(PWT):50% Paw Retraction Mechanical Threshold (PWT):
适应期:大鼠在测试区域至少适应三天后再进行测量。使用不同强度的von Frey纤维(0.6g,1.0g,1.4g,2.0g,4.0g,6.0g,8.0g,10.0g,和15.0g)对足底外侧进行垂直刺激。在手术前一天和术后第4天、第7天、第10天和第14天进行测量。首先选择4.0g的纤维,然后根据“上下法”计算大鼠的50% PWT阈值。测量大鼠对增加的机械刺激的足掌缩回比例。依次评估三组大鼠,每侧进行五次测量(每次间隔5分钟)。最后计算五次足掌缩回反应率,即大鼠对6.0g机械刺激产生的足掌缩回比例。Acclimation period: The rats were allowed to acclimate to the test area for at least three days before measurements were taken. The lateral plantar aspect was stimulated vertically using von Frey fibers of different strengths (0.6 g, 1.0 g, 1.4 g, 2.0 g, 4.0 g, 6.0 g, 8.0 g, 10.0 g, and 15.0 g). Measurements were taken one day before surgery and on the 4th, 7th, 10th, and 14th days after surgery. The 4.0 g fiber was selected first, and then the 50% PWT threshold of the rats was calculated according to the “up-down method”. The proportion of paw withdrawal in the rats to increasing mechanical stimulation was measured. The three groups of rats were evaluated sequentially, and five measurements were taken on each side (5 min intervals between each). Finally, the five paw withdrawal response rates, i.e., the proportion of paw withdrawal produced by the rats to the 6.0 g mechanical stimulation, were calculated.
冷痛觉过敏阈值:Cold hyperalgesia threshold:
为了评估足部对冷的敏感性,测量大鼠对丙酮的足部反应。在大鼠安静状态下,将预冷的丙酮(100μL)涂抹在足底表面。记录阳性反应(抬脚、摇晃、舔舐等)的时间,持续30秒。每只脚测试三次(每次间隔5分钟),记录三次测量的平均值作为该侧的反应时间。To assess the sensitivity of the foot to cold, the rat's foot response to acetone was measured. Precooled acetone (100 μL) was applied to the surface of the sole of the foot while the rat was in a quiet state. The time of positive reactions (lifting the foot, shaking, licking, etc.) was recorded for 30 seconds. Each foot was tested three times (5 minutes apart each time), and the average of the three measurements was recorded as the reaction time of that side.
鞘内给予mouse IGF1R siRNA可以显著抑制IGF1R mRNA的表达,同时改善PWT及冷痛觉过敏阈值评分,抑制疼痛反应,提示在人体上鞘内给予本发明中涉及的化合物可以有效治疗神经性疼痛。Intrathecal administration of mouse IGF1R siRNA can significantly inhibit the expression of IGF1R mRNA, while improving PWT and cold allodynia threshold scores and inhibiting pain response, indicating that intrathecal administration of the compounds involved in the present invention can effectively treat neuropathic pain in humans.
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| CN101415728A (en) * | 2006-03-28 | 2009-04-22 | 比奥根艾迪克Ma公司 | Anti-IGF-1R antibodies and uses thereof |
| CN110832068A (en) * | 2017-03-09 | 2020-02-21 | 托马斯杰弗逊大学 | Methods and compositions for treating cancer using antisense molecules |
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