WO2025153061A1 - Nucleic acid for inhibiting the expression of activin receptor type iib gene and use thereof - Google Patents
Nucleic acid for inhibiting the expression of activin receptor type iib gene and use thereofInfo
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- WO2025153061A1 WO2025153061A1 PCT/CN2025/073015 CN2025073015W WO2025153061A1 WO 2025153061 A1 WO2025153061 A1 WO 2025153061A1 CN 2025073015 W CN2025073015 W CN 2025073015W WO 2025153061 A1 WO2025153061 A1 WO 2025153061A1
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P13/00—Drugs for disorders of the urinary system
- A61P13/12—Drugs for disorders of the urinary system of the kidneys
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P21/00—Drugs for disorders of the muscular or neuromuscular system
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P25/00—Drugs for disorders of the nervous system
- A61P25/28—Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P3/00—Drugs for disorders of the metabolism
- A61P3/08—Drugs for disorders of the metabolism for glucose homeostasis
- A61P3/10—Drugs for disorders of the metabolism for glucose homeostasis for hyperglycaemia, e.g. antidiabetics
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P43/00—Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P9/00—Drugs for disorders of the cardiovascular system
- A61P9/10—Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
Definitions
- the antisense oligonucleotide comprises a gapmer.
- the gapmer comprises: (a) a 5' region consisting of 1-6 connected 5' region nucleotides; (b) a central region consisting of 6-10 connected central region nucleotides; and (c) a 3' region consisting of 1-6 connected 3' region nucleotides; wherein each of the nucleotides in the 5' region and the 3' region comprises a sugar moiety selected from 2'-MOE, LNA and cEt modifications, and at least 6 of the nucleotides in the central region comprise a 2'-deoxy sugar moiety.
- the antisense oligonucleotide has a sugar motif (5' to 3') selected from the following: eekdddddddddddddddkke, ekkddddddddddkke, kkkdydddddddddkkk, kkkddydddddddddkkk, kkkdddyddddddddkkk, kkkdddddddddddddkkk or eeeeedddddddddeeeee; wherein e represents a 2'-MOE sugar moiety, k represents a cEt sugar moiety, d represents a 2'-deoxy sugar moiety, and y represents a 2'-OMe sugar moiety.
- e represents a 2'-MOE sugar moiety
- k represents a cEt sugar moiety
- d represents a 2'-deoxy sugar moiety
- the antisense oligonucleotide comprises an oligonucleotide consisting of 12-30, 14-22, 14-20, 14-18, 14-20, 15-17, 15-25 or 16-20 linked nucleotides, preferably, the oligonucleotide consists of 20 linked nucleotides; preferably, the antisense oligonucleotide comprises a nucleotide sequence as shown in any one of SEQ ID NO.18 to 32 or a nucleotide sequence having 1 to 3 nucleotide differences therefrom, and consists of any one of them.
- the antisense oligonucleotide comprises a ligand; preferably, wherein the ligand comprises a ligand targeting hepatocytes, preferably, the ligand comprises a galactose portion, a galactosamine portion or an N-acetylgalactosamine portion, further preferably, the ligand is a trivalent or tetravalent N-acetylgalactosamine portion, and further preferably, the ligand targeting hepatocytes is L96, NAG25 or NAG37; or the ligand comprises a ligand targeting non-hepatocytes or an integrin ligand, a transferrin receptor 1 ligand, preferably, the ligand is a lipophilic group, and the lipophilic group is preferably selected from: lipids, vitamins, steroids, C5 - C30 saturated or unsaturated fatty acids, C5 - C30 alkyls, and polypeptides comprising at least one positively
- the target region is 508-534, 634-660, 655-695, 733-774, 756-782, 929-955, 1049-1089, 1141-1180, 1189-1215, 1243-1269, 1276-1321, 1377-1403, 1547-1596, 1642-1690, 1744-1773, 1916-1942 or 1949-1975 of the nucleotide sequence shown in SEQ ID NO:1.
- the target region is 508-534, 634-660, 655-681, 658-684, 669-695, 733-759, 748-774, 756-782, 929-955, 1049-1075, 1052-1078, 1063-1089, 1141-1167, 1154-1180, 1189-1 215, 1243-1269, 1276-1302, 1280-1306, 1283-1309, 1291-1317, 1295-1321, 1377-1403, 1547-1573, 1552-1578, 1570-1596, 1642-1668, 1664-1690, 1744-1770, 1747-1773, 1916-1942 or 1949-1975.
- the target region is 511-531, 637-657, 658-678, 661-681, 672-692, 736-756, 751-771, 759-779, 932-952, 1052-1072, 1055-1075, 1066-1086, 1144-1164, 1157-1177, 1192-1 212, 1246-1266, 1279-1299, 1283-1303, 1286-1306, 1294-1314, 1298-1318, 1380-1400, 1550-1570, 1555-1575, 1573-1593, 1645-1665, 1667-1687, 1747-1767, 1750-1770, 1919-1939 or 1952-1972.
- the antisense strand comprises at least 15 consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1 to 3 nucleotide differences therefrom.
- the sense strand and the antisense strand are each 17 to 23 nucleotides in length, preferably 19 to 21 nucleotides in length.
- the RNAi agent comprises one or two blunt ends, preferably one blunt end.
- the RNAi agent comprises one or two overhangs, preferably one overhang, each overhang having 1 to 4 unpaired nucleotides, preferably 2 unpaired nucleotides.
- the overhang is located at the 3' end of the sense strand, the 3' end of the antisense strand, or at both the 3' end of the sense strand and the 3' end of the antisense strand; preferably, the overhang is located at the 3' end of the antisense strand, and further preferably, the RNAi agent has a blunt end.
- the positive strand comprises at least 15 consecutive nucleotides selected from any one nucleotide sequence of SEQ ID NO: 33 to 63 and a nucleotide sequence having 1 to 3 nucleotide differences therefrom.
- RNAi agent in the RNAi agent:
- the sense strand comprises or is the sequence shown in SEQ ID NO:35, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:66, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:36, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:67, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:37, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:68, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:40, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:71, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:41, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:72, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:42, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:73, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:43, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:74, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:45, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:76, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:46, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:77, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:48, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:79, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:49, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:80, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:50, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:81, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:52, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:83, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:54, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:85, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:55, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:86, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:57, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:88, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:58, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:89, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:60, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:91, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:61, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:92, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the positive strand contains or is the sequence shown in SEQ ID NO:63 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand contains or is the sequence shown in SEQ ID NO:94 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom.
- the RNAi agent comprises duplex 6102, 6103, 6104, 6105, 6106, 6107, 6108, 6109, 6112, 6113, 6115, 6116, 6117, 6119, 6120, 6121, 6122, 6123, 6124, 6125, 6127, 6128, 6129, 6130, 6131, 6132, 6134, 6135, 6137, 6138, or 6140.
- the antisense strand has at least one phosphorothioate internucleotide linkage; preferably, the phosphorothioate internucleotide linkage exists in one or more of the following: (i) between the first nucleotide and the second nucleotide at the 5' end of the antisense strand; (ii) between the second nucleotide and the third nucleotide at the 5' end of the antisense strand; (iii) between the first nucleotide and the second nucleotide at the 3' end of the antisense strand; and (iv) between the second nucleotide and the third nucleotide at the 3' end of the antisense strand.
- the nucleotides at positions 7 and 9 of the sense chain are 2'-fluoro-modified nucleotides, one or two of the nucleotides at positions 5, 8 and 11 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
- the modification is selected from one of STC, ESC, Advanced ESC, ESC+, AD1-3, AD5 and GalXC.
- the modification is that the 5'-terminal nucleotide of the antisense strand contains a phosphate or phosphate analog modification, preferably 5'-VP.
- Another aspect of the present invention provides a pharmaceutical composition
- a pharmaceutical composition comprising any antisense oligonucleotide or any RNAi agent of the present invention and a pharmaceutically acceptable carrier; preferably, the pharmaceutical composition is formulated as an intravenous or subcutaneous injection.
- RNAi agent of the present invention provides the use of any RNAi agent of the present invention in the preparation of the following drugs:
- a drug for preventing or treating a disease selected from the group consisting of muscular atrophy, muscular dystrophy, obesity, diabetes, chronic kidney disease, acute kidney injury, postoperative healing of trauma, maxillofacial tumors, eclampsia during pregnancy, liver fibrosis, atherosclerosis, ischemic stroke and Alzheimer's disease.
- ACVR2B Activin A Receptor Type 2B
- ACVR2B refers to the activin A receptor type 2B protein or its encoding gene, also known as HTX4, ACTRIIB or ActR-IIB, Gene ID: 93.
- the NCBI accession number of the human full-length ACVR2B mRNA transcript is NM_001106.4.
- the NCBI accession number of the cynomolgus monkey ACVR2B mRNA transcript is XM_015445674.2.
- Deoxy region means a region of 5-12 contiguous nucleotides in which at least 70% of the nucleosides are 2'- ⁇ -D-deoxynucleosides. In certain embodiments, each nucleoside is selected from 2'- ⁇ -D-deoxynucleosides, bicyclic nucleosides, and 2'-substituted nucleosides. In certain embodiments, the deoxy region supports RNase H activity. In certain embodiments, the deoxy region is a gap or internal region of a gapmer.
- Gapmer means an antisense oligonucleotide comprising an internal region, the internal region being located between an external region having one or more nucleosides, having a plurality of nucleosides that support RNase H cleavage, wherein the nucleosides constituting the internal region are chemically different from the one or more nucleosides constituting the external region.
- the internal region may be referred to as a "gap” and the external region may be referred to as a "wing”.
- the internal region is a deoxy region.
- the position of the internal region or gap refers to the order of the nucleosides of the internal region and is counted from the 5' end of the internal region.
- antisense strand refers to a strand in a dsRNA that includes a region that is substantially complementary to a target sequence.
- sense strand or “sense strand” refers to a strand in a dsRNA that includes a region that is substantially complementary to an antisense strand region as defined herein.
- substantially complementary region refers to a region that is fully complementary or incompletely complementary. When the complementary region is not fully complementary to the target sequence, the mismatch may be located in the interior or terminal regions of the molecule. Typically, the most tolerable mismatch is located in the terminal regions, such as 5, 4, 3 or 2 at the 5' and/or 3' ends of the dsRNA.
- siRNA refers to a nucleic acid that forms double-stranded RNA that has the ability to reduce or inhibit the expression of a target gene when the siRNA and the target gene are present in the same cell.
- the siRNA is typically about 15 to about 30 base pairs in length, most typically about 19 to 25 base pairs in length, such as 19, 20, 21, 22, 23, 24 or 25 nucleotide pairs in length.
- the two substantially complementary chains of dsRNA do not need to be but can also be covalently linked.
- the maximum number of base pairs is the number of nucleotides in the shortest chain of the dsRNA minus any overhangs present in the duplex.
- the dsRNA can also include one or more nucleotide overhangs.
- Overhanging nucleotides refer to one or more unpaired nucleotides extending beyond the double-stranded region at the end of the chain. When the 3' end of a chain extends beyond the 5' end of another chain, or when the 5' end of a line extends beyond the 3' end of another line, nucleotide overhangs are usually generated.
- At least one chain includes a 3' overhang of at least 1 nucleotide, for example, 1 to 4 nucleotides overhang.
- at least one chain includes a 5' overhang of at least 1 nucleotide, for example, 1 to 4 nucleotides overhang.
- the 3' end and 5' end of a chain of the dsRNA both include an overhang of at least 1 nucleotide.
- the term "blunt end” or “blunt end” with respect to dsRNA refers to the absence of unpaired nucleotides or nucleotide analogs at a given end of the dsRNA, i.e., no nucleotide overhangs.
- One or both ends of the dsRNA may be flat. If both ends of the dsRNA are flat ends, the dsRNA is said to be flat-ended.
- a "blunt-ended" dsRNA is a dsRNA with both ends being flat, i.e., there is no nucleotide overhang at either end of the molecule. In most cases, such molecules are double-stranded over their entire length.
- nucleotide overhang refers to at least one unpaired nucleotide protruding from the duplex structure of the dsRNA. For example, when the 3' end of one strand of the dsRNA extends beyond the 5' end of the other strand, or vice versa, there is a nucleotide overhang.
- the nucleotide overhang may comprise or consist of nucleotide/nucleoside analogs, including deoxynucleotides/nucleosides.
- the overhang may be on the sense strand, the antisense strand, or any combination thereof.
- the overhanging nucleotides may be present at the 5' end, the 3' end, or both ends of the antisense strand or the sense strand of the dsRNA.
- the dsRNA molecule may include chemical modifications to ribonucleotides, including modifications to the ribose, bases or backbone components of ribonucleic acid, as described herein or modifications known in the art. Any such modifications, such as used in double-stranded ribonucleic acid molecules (such as siRNA, shRNA, etc.), are encompassed by the term “dsRNA” for the purposes of this disclosure.
- “Modified" nucleotides refer to nucleotides independently having modified sugar moieties, modified internucleotide linkages and/or modified nucleobases. Therefore, the term “modified nucleotides” includes substitutions, additions or removals of, for example, functional groups or atoms of internucleoside linkages, sugar moieties or nucleobases.
- ligand refers to a cell or tissue targeting agent that binds to a specified cell type (such as a hepatocyte), such as a lectin, glycoprotein, lipid or protein (such as an antibody).
- exemplary targeting agents include thyrotropin, melanocyte stimulating hormone, lectin, glycoprotein, surfactant protein A, mucin carbohydrates, multivalent lactose, multivalent galactose, N-acetylgalactosamine (GalNAc), multivalent (such as divalent or trivalent) GalNAc, N-acetylglucosamine, multivalent mannose, multivalent trehalose, glycosylated polyamino acids, multivalent galactose, transferrin, bisphosphonates, polyglutamate, polyaspartate, cholesterol, steroids, bile acid, folate, vitamin B12, biotin, RGD peptide and RGD peptide mimetic.
- the ligand is a carbohydrate, such as a monosaccharide, a disaccharide, a trisaccharide, a tetrasaccharide, a polysaccharide.
- the ligand can be a derivative comprising GalNAc.
- the ligand is comprised of one or more N-acetylgalactosamine derivatives attached via a divalent or trivalent branched linker.
- pharmaceutically acceptable refers to those compounds, materials, compositions and/or dosage forms which are within the scope of sound medical judgment and suitable for contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problems or complications, commensurate with a reasonable benefit/risk ratio.
- pharmaceutically acceptable carrier refers to a pharmaceutically acceptable material, composition or vehicle involved in carrying or delivering an ASO or RNAi agent from one organ or part of the body to another organ or part of the body, such as a liquid or solid filler, diluent, excipient, manufacturing aid or solvent encapsulating material.
- Each carrier must be “acceptable” in the sense of being compatible with the other ingredients of the composition and not injurious to the patient.
- the first aspect of the invention provides an antisense oligonucleotide comprising an oligonucleotide consisting of 12 to 30 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19 or at least 20 nucleotides that are at least 80%, 85%, 90%, 95% or 100% complementary to an equal length of consecutive nucleotides of a target region of an mRNA encoding an activin type IIB receptor (ACVR2B).
- ACVR2B activin type IIB receptor
- the target region is 504-554, 588-617, 648-686, 837-866, 1234-1268, 1360-1403, 1503-1532 or 1545-1574 of the nucleotide sequence shown in SEQ ID NO: 1.
- the target region is 504-533, 510-539, 519-548, 525-554, 588-617, 648-677, 653-682, 657-686, 837-866, 1234-1263, 1239-1268, 1360-1389, 1374-1403, 1503-1532 or 1545-1574 of the nucleotide sequence shown in SEQ ID NO: 1.
- the target region is 509-528, 515-534, 524-543, 530-549, 593-612, 653-672, 658-677, 662-681, 842-861, 1239-1258, 1244-1263, 1365-1384, 1379-1398, 1508-1527 or 1550-1569 of the nucleotide sequence shown in SEQ ID NO:1.
- the present invention provides an antisense oligonucleotide comprising an oligonucleotide consisting of 12 to 30 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19 or at least 20 nucleotides that are at least 80%, 85%, 90%, 95% or 100% complementary to consecutive nucleotides of equal length in 504-554, 588-617, 648-686, 837-866, 1234-1268, 1360-1403, 1503-1532 or 1545-1574 of the nucleotide sequence shown in SEQ ID NO:1.
- the present invention provides an antisense oligonucleotide comprising an oligonucleotide consisting of 12 to 30 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19 or at least 20 nucleotides that are identical to 504-533, 511-523, 524-536, 537-538 of the nucleotide sequence shown in SEQ ID NO: 1.
- the present invention provides an antisense oligonucleotide comprising an oligonucleotide consisting of 12 to 30 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19 or at least 20 nucleotides that are identical to 509-528, 510-529 of the nucleotide sequence shown in SEQ ID NO: 1.
- 5-534, 524-543, 530-549, 593-612, 653-672, 658-677, 662-681, 842-861, 1239-1258, 1244-1263, 1365-1384, 1379-1398, 1508-1527 or 1550-1569 are at least 80%, 85%, 90%, 95% or 100% complementary nucleotides.
- the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 consecutive nucleotide sequences of any one nucleotide sequence of SEQ ID NO:3 to 17.
- the oligonucleotide consists of 12-30, 14-22, 14-20, 14-18, 14-20, 15-17, 15-25 or 16-20 linked nucleotides and has at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 consecutive nucleotide sequences comprising any one of SEQ ID NOs: 3 to 17.
- the antisense oligonucleotide has a nucleotide sequence that is at least 80%, at least 85%, at least 90%, at least 95% or 100% (preferably 100%) complementary to the nucleotide sequence of the messenger RNA (mRNA) of human and/or cynomolgus monkey activin type IIB receptor (ACVR2B) (NCBI accession numbers NM_001106.4, SEQ ID NO.1 and XM_015445674.2, SEQ ID NO.2, respectively) when measured over the entire nucleotide sequence of the antisense oligonucleotide.
- mRNA messenger RNA
- ACVR2B cynomolgus monkey activin type IIB receptor
- the antisense oligonucleotides provided do not include modified nucleotides, such as modified sugar moieties, modified nucleobase moieties, or modified internucleotide linkages.
- the antisense oligonucleotides provided herein may comprise a nucleotide sequence as set forth in any one of SEQ ID NO: 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or a nucleotide sequence having 1, 2, or 3 nucleotide differences therefrom.
- the antisense oligonucleotides provided include modified nucleotides, such as modified sugar moieties and/or modified nucleobase moieties and/or modified internucleotide linkages.
- the antisense oligonucleotides provided include modified nucleotides, including modified sugar moieties, modified nucleobase moieties and modified internucleotide linkages.
- the antisense oligonucleotide comprises an oligonucleotide consisting of 12-30, 14-22, 14-20, 14-18, 14-20, 15-17, 15-25 or 16-20 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 consecutive nucleotide sequences of any one nucleotide sequence of SEQ ID NO:3 to 17, wherein the antisense oligonucleotide comprises at least one modification selected from a modified sugar portion, a modified nucleobase portion and a modified internucleotide linkage.
- each nucleotide in the oligonucleotide comprised by the antisense oligonucleotide is modified, including a modified sugar moiety and a modified internucleotide linkage.
- each nucleotide in the oligonucleotide comprised by the antisense oligonucleotide is modified, including a modified sugar moiety, a modified nucleobase moiety, and a modified internucleotide linkage.
- the modified sugar moiety can be at least one bicyclic sugar moiety, at least one non-bicyclic modified sugar moiety, and/or at least one sugar surrogate.
- the antisense oligonucleotide comprises at least one bicyclic sugar moiety.
- two atoms of the substituent bridged furanosyl ring are to form a second ring, thereby producing a bicyclic sugar moiety.
- the bicyclic sugar moiety comprises a bridge between 4' and 2' furanose ring atoms.
- 4' to 2' bridged sugar substituents include, but are not limited to: 4'- CH2-2 ', 4'-( CH2 ) 2-2 ', 4'-( CH2 ) 3-2 ', 4'-CH2- O -2'("LNA"),4'- CH2 -S-2', 4'-( CH2 ) 2 -O-2'("ENA"),4'-CH( CH3 )-O-2' (referred to as "constrained ethyl" or "cEt”), 4'- CH2 -O- CH2-2 ', 4' -CH2-N(R)-2', 4'-CH( CH2OCH3 ) ...
- bicyclic sugar moieties and nucleosides incorporating such bicyclic sugar moieties are further defined by isomeric configurations.
- LNA nucleosides (described herein) may be in the ⁇ -L configuration or in the ⁇ -D configuration.
- the bicyclic sugar moiety has a 4'-2' bridge, which is preferably cEt or LNA.
- the antisense oligonucleotide comprises at least one non-bicyclic modified sugar moiety, such non-bridging substituents may be located at any position of the furanose group, including but not limited to substituents located at the 2', 4' and/or 5' positions.
- one or more non-bridging substituents of the non-bicyclic modified sugar moiety have a branched chain.
- Suitable 2'-substituents for the non-bicyclic modified sugar moiety include but are not limited to: 2'-F, 2'-OCH 3 ("OMe” or “O-methyl”), and 2'-O(CH 2 ) 2 OC H 3 (“MOE” or "O-methoxyethyl”).
- 2'-substituents may be further substituted with one or more substituents independently selected from the group consisting of hydroxy, amino, alkoxy, carboxyl, benzyl, phenyl, nitro (NO 2 ), thiol, thioalkoxy, thioalkyl, halogen, alkyl, aryl, alkenyl, and alkynyl.
- substituents independently selected from the group consisting of hydroxy, amino, alkoxy, carboxyl, benzyl, phenyl, nitro (NO 2 ), thiol, thioalkoxy, thioalkyl, halogen, alkyl, aryl, alkenyl, and alkynyl.
- 4'-substituents suitable for non-bicyclic modified sugar moieties include, but are not limited to, alkoxy (e.g., methoxy), alkyl, and those described in Manoharan et al., WO 2015
- non-bicyclic modified sugar moieties examples include, but are not limited to: 5'-methyl (R or S), 5'-vinyl, and 5'-methoxy.
- non-bicyclic modified sugar moieties include more than one non-bridging sugar substituent, such as 2'-F-5'-methyl sugar moieties and modified sugar moieties and modified nucleosides described in Migawa et al., WO 2008/101157 and Rajeev et al., US2013/0203836.
- a non-bridging 2'-substituent selected from the
- the 2'-substituted non-bicyclic modified nucleoside comprises a sugar moiety comprising a non-bridging 2' - substituent selected from the group consisting of F (2'-F), OCH3 (2'-OMe), and OCH2CH2OCH3 ( 2' -MOE).
- the antisense oligonucleotide comprises at least one sugar surrogate.
- the oxygen atom of the sugar moiety is replaced by, for example, sulfur, carbon or nitrogen atom.
- such modified sugar moieties also include bridged and/or non-bridged substituents as described herein.
- some sugar surrogate comprises a 4'-sulfur atom and a 2' position (see, for example, Bhat et al., U.S. 7,875,733 and Bhat et al., U.S. 7,939,677) and/or a 5' position substitution.
- the sugar surrogate comprises a ring having other than 5 atoms.
- the sugar surrogate comprises a 6-membered tetrahydropyran ("THP").
- THP 6-membered tetrahydropyran
- Such tetrahydropyrans may be further modified or substituted.
- Nucleosides comprising such modified tetrahydropyrans include, but are not limited to, hexitol nucleic acids (“HNA”), anitol nucleic acids (“ANA”), mannitol nucleic acids (“MNA”) (see, e.g., Leumann, CJ. Bioorg. & Med. Chem. 2002, 10, 841-854), fluoro-HNA (F-HNA, also referred to as F-THP or 3'-fluorotetrahydropyran).
- HNA hexitol nucleic acids
- ANA anitol nucleic acids
- MNA mannitol nucleic acids
- sugar substitutes include rings with more than 5 atoms and more than one heteroatom.
- nucleosides comprising morpholinyl sugar moieties and their uses in oligonucleotides have been reported.
- sugar substitutes include acyclic moieties. Examples of nucleosides and oligonucleotides comprising such acyclic sugar substitutes include, but are not limited to: peptide nucleic acids ("PNA”), acyclic butyl nucleic acids (see, for example, Kumar et al., Org. Biomol.
- PNA peptide nucleic acids
- acyclic butyl nucleic acids see, for example, Kumar et al., Org. Biomol.
- PNA can be made highly permeable to mammalian cell membranes (see, for example, WO2019022434 and WO2009113828).
- sugar substitutes are selected from POM, PNA, THP and F-HNA.
- the antisense oligonucleotide comprises one or more nucleosides comprising unmodified nucleobases. In certain embodiments, the antisense oligonucleotide comprises one or more nucleosides comprising modified nucleobases. In certain embodiments, the antisense oligonucleotide comprises one or more nucleosides that do not comprise nucleobases, referred to as abasic nucleosides.
- the modified nucleobase is selected from: 5-substituted pyrimidines (e.g., 5'methylcytosine, m5C), 6-azapyrimidines, alkyl or alkynyl substituted pyrimidines, alkyl substituted purines, and N-2, N-6, and O-6 substituted purines.
- 5-substituted pyrimidines e.g., 5'methylcytosine, m5C
- 6-azapyrimidines e.g., alkyl or alkynyl substituted pyrimidines
- alkyl substituted purines e.g., N-2, N-6, and O-6 substituted purines.
- the modified nucleobase is selected from: 2-aminopropyladenine, 5-hydroxymethylcytosine, xanthine, hypoxanthine, 2-aminoadenine, 6-N-methylguanine, 6-N-methyladenine, 2-propyladenine, 2-thiouracil, 2-thiothymine and 2-thiocytosine, 5-propynyl (-C ⁇ C-CH 3 )uracil, 5-propynylcytosine, 6-azouracil, 6-azocytosine, 6-azothymine, 5-ribosyluracil (pseudouracil), 4-thiouracil; 8-halo, 8-amino, 8-thiol, 8-thioalkyl, 8-hydroxy, 8-aza and other 8-substituted purines; 5-halo, especially 5-bromo, 5-trifluoromethyl, 5-halouracil and 5-halocytosine; 7-methylguanine, 7-methyladenine, 2-aminoa
- modified nucleobases include tricyclic pyrimidines such as 1,3-diazaphenoxazin-2-one, 1,3-diazaphenathiazin-2-one, and 9-(2-aminoethoxy)-1,3-diazaphenoxazin-2-one (G-clamp).
- Modified nucleobases may also include those in which the purine or pyrimidine base is replaced by other heterocycles, such as 7-deaza-adenine, 7-deazaguanosine, 2-aminopyridine and 2-pyridone.
- the antisense oligonucleotide comprises one or more 5-methylcytosine (m5C).
- the modified nucleobase can be a nucleobase covalently attached to a cationic lipid.
- antisense oligonucleotides can be made highly permeable to mammalian cell membranes.
- Suitable covalent attachment of cationic lipid modifications can be those modifications described in WO2019022434A1, the entire contents of which are incorporated herein by reference.
- the antisense oligonucleotide comprises at least one modified internucleotide linkage.
- each internucleotide linkage of the antisense oligonucleotide is a modified internucleotide linkage.
- any internucleotide linkage can be used to link the nucleosides of the antisense oligonucleotide together. Two major classes of internucleoside linkage groups are defined based on the presence or absence of a phosphorus atom.
- Modified internucleotide linkages can be used to alter, typically increase, the nuclease resistance of an oligonucleotide compared to naturally occurring phosphodiester internucleotide linkages.
- internucleotide linkages with chiral atoms can be prepared as racemic mixtures or as separated enantiomers. Methods for preparing phosphorus-containing and non-phosphorus-containing internucleotide linkages are well known to those of skill in the art.
- internucleotide connections with chiral centers include, but are not limited to, alkylphosphonates and phosphorothioates.
- Antisense oligonucleotides comprising internucleotide connections with chiral centers can be prepared into a population of antisense oligonucleotides comprising stereo-random internucleotide connections, or prepared into a population of antisense oligonucleotides comprising internucleotide connections of phosphorothioates in a specific stereochemical configuration.
- the population of antisense oligonucleotides comprises phosphorothioate internucleotide connections, wherein all of the phosphorothioate internucleotide connections are stereo-random.
- Such antisense oligonucleotides can be generated using a synthetic method that randomly selects the stereochemical configuration of each phosphorothioate internucleotide connection. Nevertheless, as fully understood by those skilled in the art, each individual phosphorothioate of each individual oligonucleotide molecule has a determined stereo configuration.
- the population of antisense oligonucleotides is enriched with antisense oligonucleotides comprising one or more specific phosphorothioate internucleotide connections in a specific independently selected stereochemical configuration.
- at least 65% of the molecules in the population have specific phosphorothioate internucleotide connections of a specific configuration.
- a specific phosphorothioate internucleotide linkage of a specific configuration is present in at least 70% of the molecules in the population.
- a specific phosphorothioate internucleotide linkage of a specific configuration is present in at least 80% of the molecules in the population.
- a specific phosphorothioate internucleotide linkage of a specific configuration is present in at least 90% of the molecules in the population. In certain embodiments, a specific phosphorothioate internucleotide linkage of a specific configuration is present in at least 99% of the molecules in the population.
- Such chiral enriched populations of antisense oligonucleotides can be generated using synthetic methods known in the art, such as those described in the following documents: Oka et al., JACS 125, 8307 (2003); Wan et al., Nuc. Acid. Res. 42, 13456 (2014); and WO 2017/015555.
- the population of antisense oligonucleotides is enriched with antisense oligonucleotides having at least one indicated phosphorothioate in a (Sp) configuration. In certain embodiments, the population of antisense oligonucleotides is enriched for antisense oligonucleotides having at least one phosphorothioate in the (Rp) configuration.
- the antisense oligonucleotide includes a gapmer.
- the gapmer is defined by two external regions or "wings" and a central or internal region or "gap".
- the three regions (5' wing, gap and 3' wing) of the gapmer motif form a contiguous sequence of nucleosides, wherein at least some sugar moieties of the nucleosides of each wing are different from at least some sugar moieties of the nucleosides of the gap.
- the sugar moiety of the nucleosides closest to the gap in each wing is different from the sugar moiety of the adjacent gap nucleosides, thereby defining the boundary between the wing and the gap (i.e., the wing/gap junction).
- the sugar moieties in the gap are identical to each other.
- the gap includes one or more nucleosides, and the sugar moieties of the nucleosides are different from the sugar moieties of one or more other nucleosides of the gap.
- the sugar motifs of the two wings are identical to each other (symmetrical gapmers).
- the sugar motifs of the 5' wing are different from the sugar motifs of the 3' wing (asymmetric gapmers).
- the gapmer comprises: (a) a 5' region consisting of 1-6 linked 5' region nucleotides; (b) a central region consisting of 6-10 linked central region nucleotides; and (c) a 3' region consisting of 1-6 linked 3' region nucleotides; wherein each of the nucleotides in the 5' region and the 3' region comprises a sugar moiety modified from 2'-MOE, LNA and cEt, and at least 6 of the nucleotides in the central region comprise a 2'-deoxy sugar moiety.
- the gapmer has a sugar motif (5' to 3') selected from the following: eekdddddddddddddddkke, ekkddddddddddkke, kkkdyddddddddkkk, kkkddydddddddddkkk, kkkdddyddddddddkkk, kkkdddddddddddddkkk or eeeeeddddddddddeeee; wherein e represents a 2'-MOE sugar moiety, k represents a cEt sugar moiety, d represents a 2'-deoxy sugar moiety, and y represents a 2'-OMe sugar moiety.
- e represents a 2'-MOE sugar moiety
- k represents a cEt sugar moiety
- d represents a 2'-deoxy sugar moiety
- y represents a 2'-OMe
- the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.19 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists of it. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.20 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists of it. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.21 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists of it.
- the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.22 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.23 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.24 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof.
- the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.31 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.32 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof.
- RNAi agent for inhibiting the expression of the ACVR2B gene, comprising a sense strand and an antisense strand forming a complementary double-stranded region, wherein the antisense strand comprises at least 15, at least 16, at least 17, at least 18, at least 19, at least 20 or at least 21 nucleotides that are at least 80%, 85%, 90%, 95% or 100% complementary to an equal length of consecutive nucleotides of a target region of an mRNA encoding ACVR2B or differ from it by no more than 3 nucleotides.
- the target region is 508-534, 634-660, 655-695, 733-774, 756-782, 929-955, 1049-1089, 1141-1180, 1189-1215, 1243-1269, 1276-1321, 1377-1403, 1547-1596, 1642-1690, 1744-1773, 1916-1942 or 1949-1975 of the nucleotide sequence shown in SEQ ID NO:1.
- the target region is 508-534, 634-660, 655-681, 658-684, 669-695, 733-759, 748-774, 756-782, 929-955, 1049-1075, 1052-1078, 1063-1089, 1141-1167, 1154-1180, 1189-1 215, 1243-1269, 1276-1302, 1280-1306, 1283-1309, 1291-1317, 1295-1321, 1377-1403, 1547-1573, 1552-1578, 1570-1596, 1642-1668, 1664-1690, 1744-1770, 1747-1773, 1916-1942 or 1949-1975.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the antisense strand comprises at least 15, at least 16, at least 17, at least 18, at least 19, at least 20 or at least 21 residues that are identical to 508-534, 634-660, 655-695, 733-774, 756-782,
- An equal length of consecutive nucleotides of 929-955, 1049-1089, 1141-1180, 1189-1215, 1243-1269, 1276-1321, 1377-1403, 1547-1596, 1642-1690, 1744-1773, 1916-1942 or 1949-1975 is at least 80%, 85%, 90%, 95% or 100% complementary or differs from nucleotides therewith by no more than 3 nucleotides.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the antisense strand comprises at least 15, at least 16, at least 17, at least 18, at least 19, at least 20 or at least 21 508-534, 634-660, 655-681, 658-684, 669-695, 733-759, 748-774, 756-782, 929-955, 1049-1075, 1052-1078, 1063-1089, 1141-1 167, 1154-1180, 1189-1215, 1243-1269, 1276-1302, 1280-1306, 1283-1309, 1291-1317, 1295-1321, 1377-1403, 1547-1573, 1552-1578, 1570-1596, 1642-1668, 1664-1690, 1744-1770, 1747-1773, 1916-1942, or 1949-1975, which are at least 80%, 85%, 90%, 95% or 100% complementary to
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the antisense strand comprises at least 15, at least 16, at least 17, at least 18, at least 19, at least 20 or at least 21 nucleotides that are identical to 511-531, 637-657, 658-678, 661-681, 672-692, 736-756, 751-771, 759-779, 932-952, 1052-1072, 1055-1075, 1066-1086, 1144-1145 of the nucleotide sequence shown in SEQ ID NO:1.
- the antisense strand comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences from each of them.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense chain and an antisense chain forming complementary double-stranded regions, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides of any nucleotide sequence selected from SEQ ID NO: 64 to 94.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense chain and an antisense chain that form complementary double-stranded regions, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from a nucleotide sequence having 1, 2 or 3 nucleotide differences with any one of the nucleotide sequences of SEQ ID NO: 64 to 94.
- 15 e.g., 15, 16, 17, 18, 19, 20 or 21
- the 1, 2 or 3 nucleotide differences may be located on the sense strand and/or antisense strand outside the double-stranded region. In some embodiments, the 1, 2 or 3 nucleotide differences are located on the sense strand and/or antisense strand within the double-stranded region. In some embodiments, a portion of the 1, 2 or 3 nucleotide differences are located on the sense strand and/or antisense strand within the double-stranded region, and another portion is located on the sense strand and/or antisense strand outside the double-stranded region.
- the 1, 2 or 3 nucleotide differences are located at the 3' end or the 5' end of the antisense strand. In some embodiments, the 1, 2 or 3 nucleotide differences are located between the 3' end and the 5' end of the antisense strand. In some embodiments, 1 or 2 of the 1, 2 or 3 nucleotide differences are located at the 3' end or the 5' end of the antisense strand, and the other 1 or 2 are located between the 3' end and the 5' end of the antisense strand.
- the 1, 2 or 3 nucleotide differences are located at the 3'-most end or the 5'-most end of the sense strand.
- the 1, 2 or 3 nucleotide differences are located between the 3'-most end and the 5'-most end of the sense strand. In some embodiments, 1 or 2 of the 1, 2 or 3 nucleotide differences are located at the 3'-most end or the 5'-most end of the sense strand, and the other 1 or 2 are located between the 3'-most end and the 5'-most end of the sense strand.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, comprising a sense strand and an antisense strand that form a complementary double-stranded region, wherein the antisense strand comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20, or 21) consecutive nucleotides selected from a nucleotide sequence having 1 nucleotide difference with any one of the nucleotide sequences of SEQ ID NO: 64 to 94, and the 1 nucleotide difference is located at the 3'-most end of the antisense strand.
- the antisense strand comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20, or 21) consecutive nucleotides selected from a nucleotide sequence having 1 nucleotide difference with any one of the nucleotide sequences of SEQ ID NO: 64 to 94, and the 1 nucleotide difference is located at the 3'-most end of the antisense strand.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, comprising a sense strand and an antisense strand that form a complementary double-stranded region, wherein the antisense strand comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20, or 21) consecutive nucleotides selected from a nucleotide sequence having 2 nucleotide differences with any one of the nucleotide sequences of SEQ ID NO: 64 to 94, and the 2 nucleotide differences are continuously located at the 3'-most end of the antisense strand.
- the antisense strand comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20, or 21) consecutive nucleotides selected from a nucleotide sequence having 2 nucleotide differences with any one of the nucleotide sequences of SEQ ID NO: 64 to 94, and the 2 nucleotide differences are continuously located at the 3'-most end of the antisense strand.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense chain and an antisense chain that form complementary double-stranded regions, wherein the antisense chain does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from any one nucleotide sequence of SEQ ID NO: 64 to 94.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the antisense strand does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from a nucleotide sequence having 1, 2 or 3 nucleotide differences with any one of the nucleotide sequences of SEQ ID NO: 64 to 94.
- the antisense strand does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from a nucleotide sequence having 1, 2 or 3 nucleotide differences with any one of the nucleotide sequences of SEQ ID NO: 64 to 94.
- RNAi agent for inhibiting the expression of the ACVR2B gene which comprises an antisense chain, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises an antisense chain, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides of any nucleotide sequence selected from SEQ ID NO: 64 to 94.
- the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises an antisense chain, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from a nucleotide sequence having 1, 2 or 3 nucleotide differences from any one of the nucleotide sequences of SEQ ID NO: 64 to 94.
- the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from a nucleotide sequence having 1, 2 or 3 nucleotide differences from any one of the nucleotide sequences of SEQ ID NO: 64 to 94.
- the length of the double-stranded region is about 17 to about 23 base pairs.
- a double-stranded region of suitable length is about 17 to about 22 base pairs, about 17 to about 21 base pairs, about 17 to about 20 base pairs, about 17 to about 19 base pairs, about 17 to about 18 base pairs, about 18 to about 23 base pairs, about 18 to about 22 base pairs, about 18 to about 21 base pairs, about 18 to about 20 base pairs, about 19 to 23 base pairs, about 19 to 22 base pairs, about 19 to 21 base pairs, about 20 to 23 base pairs, about 20 to 22 base pairs, or about 21 to 23 base pairs.
- the length of the double-stranded region is about 18 to about 21 base pairs. In other embodiments, the length of the double-stranded region is about 19 base pairs.
- a RNAi agent for inhibiting the expression of the ACVR2B gene which comprises a sense strand and an antisense strand that form a complementary double-stranded region, the length of the double-stranded region is about 17 to about 23 base pairs, and the length of the antisense strand does not exceed 23 nucleotides and comprises at least 15 consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1 to 3 nucleotide differences therefrom.
- RNAi agent for inhibiting the expression of the ACVR2B gene which comprises a sense strand and an antisense strand that form a complementary double-stranded region, the length of the double-stranded region is about 18 to about 21 base pairs, and the length of the antisense strand does not exceed 23 nucleotides and comprises at least 15 consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1 to 3 nucleotide differences therefrom.
- a RNAi agent for inhibiting the expression of the ACVR2B gene which comprises a sense strand and an antisense strand that form a complementary double-stranded region, the length of the double-stranded region is about 19 base pairs, and the length of the antisense strand does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom.
- the length of the sense strand and the antisense strand in the RNAi agent of the invention is each independently about 17 to about 23 nucleotides, such as about 18 to about 23 nucleotides, about 19 to about 23 nucleotides, about 20 to about 23 nucleotides, about 21 to about 23 nucleotides, about 17 to about 22 nucleotides, about 17 to about 21 nucleotides, about 17 to about 20 nucleotides, about 17 to about 19 nucleotides, about 18 to about 22 nucleotides, about 18 to about 21 nucleotides, about 18 to about 20 nucleotides, about 19 to about 22 nucleotides, about 19 to about 21 nucleotides, or about 20 to about 22 nucleotides.
- the length of the sense strand and the antisense strand is each independently about 17, about 18, about 19, about 20, about 21, about 22, about 23 nucleotides.
- the RNAi agent for inhibiting the expression of the ACVR2B gene includes (i) a sense strand and an antisense strand each having a length of 23 nucleotides, (ii) a double-stranded region of 21 base pairs in length, and (iii) a nucleotide overhang of 1 unpaired nucleotide at the 3' end of the sense strand and the 3' end of the antisense strand.
- the sense strand and the antisense strand have the same length and form a double-stranded region over their entire length, so that no nucleotides protrude at either end of the double-stranded molecule.
- the RNAi agent used to inhibit the expression of the ACVR2B gene is blunt-ended and includes (i) a sense strand and an antisense strand each having a length of 21 nucleotides, and (ii) a double-stranded region of 21 base pairs in length.
- the RNAi agent used to inhibit the expression of the ACVR2B gene is blunt-ended and includes (i) a sense strand and an antisense strand each having a length of 23 nucleotides, and (ii) a double-stranded region of 23 base pairs in length.
- the RNAi agent used to inhibit the expression of the ACVR2B gene is blunt-ended and includes (i) a sense strand and an antisense strand each having a length of 19 nucleotides, and (ii) a double-stranded region of 19 base pairs in length.
- the protruding nucleotides can be ribonucleotides or modified nucleotides as described herein.
- the protruding nucleotides are 2'-modified nucleotides (e.g., 2'-fluoro modified nucleotides, 2'-O-methyl modified nucleotides) or combinations thereof.
- the protruding nucleotides are deoxyribonucleotides, such as deoxythymidine.
- the protruding nucleotides are 2'-O-methyl modified nucleotides, 2'-fluoro modified nucleotides, 2'-methoxyethyl modified nucleotides, abasic nucleotides, inverted abasic nucleotides, inverted nucleotides or combinations thereof.
- the protruding comprises 5'-uridine-uridine-3' (5'-UU-3') dinucleotides.
- the UU dinucleotides can include ribonucleotides or modified nucleotides, such as 2'-modified nucleotides.
- the protruding comprises 5'-deoxythymidine-deoxythymidine-3' (5'-dTdT-3') dinucleotides.
- the nucleotides in the overhang may be complementary to the target gene sequence, form a mismatch with the target gene sequence, or contain some other sequence (such as UU, TT, AA, GG, etc.).
- the nucleotide overhang may be at the 5' end or 3' end of one or both strands.
- the RNAi agent for inhibiting the expression of the ACVR2B gene comprises a nucleotide overhang at the 5' end and the 3' end of the antisense strand.
- the RNAi agent for inhibiting the expression of the ACVR2B gene comprises a nucleotide overhang at the 5' end and the 3' end of the sense strand.
- the RNAi agent for inhibiting the expression of the ACVR2B gene includes a nucleotide overhang at the 5' end of the sense strand and the 5' end of the antisense strand.
- the RNAi agent for inhibiting the expression of the ACVR2B gene includes a nucleotide overhang at the 3' end of the sense strand and the 3' end of the antisense strand. In some embodiments, the RNAi agent for inhibiting the expression of the ACVR2B gene includes only a nucleotide overhang at the 5' end of the sense strand. In some embodiments, the RNAi agent for inhibiting the expression of the ACVR2B gene includes only a nucleotide overhang at the 3' end of the sense strand. In some embodiments, the RNAi agent for inhibiting the expression of the ACVR2B gene includes only a nucleotide overhang at the 3' end of the sense strand.
- the RNAi agent for inhibiting the expression of the ACVR2B gene comprises (i) a sense strand of 19 nucleotides in length, (ii) an antisense strand of 21 nucleotides in length, and the two strands form a double-stranded region with a length equal to the length of the sense strand.
- the RNAi agent for inhibiting the expression of the ACVR2B gene comprises (i) a sense strand of 21 nucleotides in length, (ii) an antisense strand of 23 nucleotides in length, and the two strands form a double-stranded region with a length equal to the length of the sense strand.
- a RNAi agent for inhibiting the expression of the ACVR2B gene in a cell comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain having a length of no more than 23 nucleotides and comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, and the RNAi agent includes an overhang and a blunt end, and the overhang preferably has 2 unpaired nucleotides.
- a RNAi agent for inhibiting the expression of ACVR2B gene in a cell comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain having a length of no more than 23 nucleotides and comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, and the RNAi agent includes an overhang and a blunt end, the overhang preferably having 2 unpaired nucleotides, wherein the overhang is formed at the 3' end of the antisense chain, and the blunt end is formed at the 3' end of the sense chain and the 5' end of the antisense chain.
- a RNAi agent for inhibiting the expression of ACVR2B gene in a cell comprising a sense strand and an antisense strand forming a double-stranded region, the length of the double-stranded region is 19 base pairs, the length of the antisense strand does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, the length of the sense strand is 19 to 21 nucleotides, and the RNAi agent includes an overhang and a blunt end, the overhang preferably having 2 unpaired nucleotides, wherein the overhang is formed at the 3' end of the antisense strand, and the blunt end is formed at the 3' end of the sense strand and the 5' end of the antisense strand.
- a RNAi agent for inhibiting the expression of ACVR2B gene in a cell comprising a sense strand and an antisense strand forming a double-stranded region, the double-stranded region having a length of 19 base pairs, the antisense strand having a length of 21 nucleotides and being at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, the sense strand having a length of 19 nucleotides, and the RNAi agent including an overhang and a blunt end, the overhang preferably having 2 unpaired nucleotides, wherein the overhang is formed at the 3' end of the antisense strand, and the blunt end is formed at the 3' end of the sense strand and the 5' end of the antisense strand.
- the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense chain and an antisense chain forming a double-stranded region, wherein the double-stranded region is 19 base pairs in length, the antisense chain is 21 nucleotides in length and is any one nucleotide sequence selected from SEQ ID NO: 64 to 94, the sense chain is 19 nucleotides in length, and the RNAi agent includes an overhang and a blunt end, wherein the overhang preferably has 2 unpaired nucleotides, wherein the overhang is formed at the 3' end of the antisense chain, and the blunt end is formed at the 3' end of the sense chain and the 5' end of the antisense chain.
- the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, and the sense chain comprising at least 15 (e.g., 15, 16, 17, 18 or 19) consecutive nucleotides selected from any nucleotide sequence selected from SEQ ID NO: 33 to 63 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom.
- the antisense chain comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom
- the sense chain comprising
- the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain having no more than 23 nucleotides and comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, and the sense chain having no more than 21 nucleotides and comprising at least 15 (e.g., 15, 16, 17, 18 or 19) consecutive nucleotides selected from any nucleotide sequence selected from SEQ ID NO: 33 to 63 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom.
- the antisense chain having no more than 23 nucleotides and comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO
- the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain having no more than 23 nucleotides and comprising a nucleotide sequence selected from any one of SEQ ID NO: 64 to 94, and the sense chain having no more than 21 nucleotides and comprising any one of nucleotide sequences selected from SEQ ID NO: 33 to 63.
- the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense strand and an antisense strand forming a double-stranded region, wherein:
- the sense strand comprises or is the sequence shown in SEQ ID NO:33, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:64, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:34, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:65, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:35, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:66, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:36, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:67, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:37, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:68, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:38, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:69, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:39, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:70, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:40, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:71, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:41, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:72, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:42, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:73, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:43, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:74, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:44, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:75, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:45, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:76, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:46, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:77, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:47, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:78, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:48, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:79, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:49, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:80, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:50, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:81, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:51, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:82, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:52, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:83, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:53, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:84, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:54, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:85, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:55, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:86, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:56, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:87, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:57, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:88, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:58, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:89, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:59, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:90, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:60, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:91, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:61, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:92, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the sense strand comprises or is the sequence shown in SEQ ID NO:62, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand comprises or is the sequence shown in SEQ ID NO:93, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
- the positive strand contains or is the sequence shown in SEQ ID NO:63 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom
- the antisense strand contains or is the sequence shown in SEQ ID NO:94 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom.
- the present invention provides a RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the sense strand and the antisense strand pair to form a duplex 6102, 6103, 6104, 6105, 6106, 6107, 6108, 6109, 6112, 6113, 6115, 6116, 6117, 6119, 6120, 6121, 6122, 6123, 6124, 6125, 6127, 6128, 6129, 6130, 6131, 6132, Any one of 6134, 6135, 6137, 6138 or 6140.
- the sense strand and/or antisense strand of the RNAi agent may contain at least one modified nucleotide.
- the sense strand and the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention each contain at least one modified nucleotide.
- each nucleotide of the sense strand and the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified.
- the modified nucleotides are independently selected from 2'-deoxy-thymine (dT) nucleotides, 2'-O-methyl modified nucleotides (2'-OMe), 2'-fluorine modified nucleotides (2'-F), 2'-deoxy modified nucleotides, locked nucleic acids (LNA), open ring nucleic acids (UNA), bridge nucleic acids (BNA), glycol nucleic acids (GNA), assueose nucleic acids (TNA), conformationally restricted nucleotides, restricted ethyl nucleotides (cEt), 2'-amino-modified nucleotides, 2'-O-allyl-modified nucleotides, 2'-C-alkyl-modified nucleotides, 2'-O -Methoxyethyl modified nucleotides (2'-MOE), abasic nucleotides, inverted abasic nucleotides, inverted
- the modified nucleotides are independently selected from 2'-O-methyl modified nucleotides, 2'-fluoro modified nucleotides, nucleotides comprising thiophosphate bond internucleotide connections, and combinations thereof.
- each nucleotide of the sense strand and/or antisense strand of the RNAi agent is modified.
- each nucleotide of the sense strand and/or antisense strand of the RNAi agent is modified, and the modified nucleotides are independently selected from 2'-O-methyl modified nucleotides, 2'-fluoro modified nucleotides, nucleotides comprising thiophosphate bond internucleotide connections, and combinations thereof.
- each nucleotide of the sense chain and the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and the modification method is selected from one of STC (Alnylam), ESC (Alnylam), Advanced ESC (Alnylam), ESC+ (Alnylam), AD1-3 (Arrowhead), AD5 (Arrowhead) and GalXC (Dicerna) (see, for example, Hu B, Zhong L, Weng Y, et al. Therapeutic siRNA: state of the art. Signal Transduct Target Ther. 2020; 5(1): 101).
- the 5'-terminal nucleotide of the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention contains a phosphate or phosphate analog modification, preferably 5'-VP (see Parmar R, Willoughby JL, Liu J, et al. 5'-(E)-Vinylphosphonate: A Stable Phosphate Mimic Can Improve the RNAi Activity of siRNA-GalNAc Conjugates. Chembiochem. 2016; 17(11): 985-989).
- each nucleotide of the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides.
- each nucleotide of the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at the 2nd, 5th, 7th and 14th positions of the antisense strand are 2'-fluoro-modified nucleotides, and one of the nucleotides at the 12th and 16th positions of the antisense strand is a 2'-fluoro-modified nucleotide, the nucleotides at the remaining positions of the antisense strand are all 2'-methoxy-modified nucleotides, and the antisense strand has at least one phosphorothioate bond internucleotide connection.
- the phosphorothioate bond internucleotide connection exists in one or more of the following: between the first nucleotide and the second nucleotide at the 5' end of the antisense strand; between the second nucleotide and the third nucleotide at the 5' end of the antisense strand; between the first nucleotide and the second nucleotide at the 3' end of the antisense strand; and between the second nucleotide and the third nucleotide at the 3' end of the antisense strand.
- the phosphorothioate internucleotide linkage exists between the first and second nucleotides at the 5' end of the antisense strand; between the second and third nucleotides at the 5' end of the antisense strand; between the first and second nucleotides at the 3' end of the antisense strand; and between the second and third nucleotides at the 3' end of the antisense strand.
- each nucleotide of the sense chain and the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides; in the direction from the 5' end to the 3' end, the nucleotides at positions 5, 7, 8 and 9 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
- each nucleotide of the sense chain and antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides; in the direction from the 5' end to the 3' end, the nucleotides at positions 7, 8 and 9 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
- each nucleotide of the sense chain and antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides; in the direction from the 5' end to the 3' end, the nucleotides at positions 5, 7 and 9 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
- each nucleotide of the sense chain and the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides; in the direction from the 5' end to the 3' end, the nucleotides at positions 7, 9 and 11 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
- the sense strand has at least one phosphorothioate internucleotide connection.
- the phosphorothioate internucleotide connection is present in one or more of the following positions: (i) between the first nucleotide and the second nucleotide at the 5' end of the sense strand; (ii) between the second nucleotide and the third nucleotide at the 5' end of the sense strand; (iii) between the first nucleotide and the second nucleotide at the 3' end of the sense strand; and (iv) between the second nucleotide and the third nucleotide at the 3' end of the sense strand.
- the antisense strand has at least one phosphorothioate internucleotide linkage.
- the phosphorothioate internucleotide linkage is present in one or more of the following: between the first nucleotide and the second nucleotide at the 5' end of the antisense strand; between the second nucleotide and the third nucleotide at the 5' end of the antisense strand; between the first nucleotide and the second nucleotide at the 3' end of the antisense strand; and between the second nucleotide and the third nucleotide at the 3' end of the antisense strand.
- each nucleotide of the sense strand and the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense strand are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense strand is a 2'-fluoro-modified nucleotide, the nucleotides at the remaining positions of the antisense strand are all 2'-methoxy-modified nucleotides, and the antisense strand has at least one phosphorothioate bond internucleotide connection, and the phosphorothioate bond internucleotide connection exists in one or more of the following: between the first nucleotide and the second nucleotide at the 5' end of the antisense
- each nucleotide of the sense strand and the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense strand are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense strand is a 2'-fluoro-modified nucleotide, the nucleotides at the remaining positions of the antisense strand are all 2'-methoxy-modified nucleotides, and the antisense strand has at least one phosphorothioate bond internucleotide connection, and the phosphorothioate bond internucleotide connection exists between: the first nucleotide and the second nucleotide at the 5' end of the antisense strand, and between the second nucleotide and
- the 7th and 9th nucleotides of the sense strand are 2'-fluoro-modified nucleotides, one or two of the 5th, 8th and 11th nucleotides of the sense strand are 2'-fluoro-modified nucleotides, the nucleotides at the remaining positions of the sense strand are all 2'-methoxy-modified nucleotides, and the sense strand has at least one phosphorothioate bond internucleotide connection, and the phosphorothioate bond internucleotide connection exists between the 1st nucleotide and the 2nd nucleotide at the 5' end of the sense strand and between the
- Ligand-linked oligonucleotides and RNAi agents Ligand-linked oligonucleotides and RNAi agents
- the antisense oligonucleotide or RNAi agent of the present invention may contain a ligand.
- ligand refers to any compound or molecule that is capable of interacting directly or indirectly with another compound or molecule.
- the interaction of a ligand with another compound or molecule may trigger a biological response (e.g., initiating a signal transduction cascade, inducing receptor-mediated endocytosis), or it may be just a physical connection.
- the ligand may change one or more properties of the attached double-stranded RNA molecule, such as the pharmacodynamics, pharmacokinetics, binding, absorption, cellular distribution, cellular uptake, charge and/or clearance of the RNA molecule.
- the ACVR2B gene is expressed in a variety of cells and tissues. Therefore, in certain embodiments, it is desirable to specifically deliver the antisense oligonucleotides or RNAi agents of the present invention to hepatocytes. Therefore, in certain embodiments, the ligands are targeted to specifically deliver antisense oligonucleotides or RNAi agents to hepatocytes using various methods described in more detail below. In certain embodiments, the antisense oligonucleotides or RNAi agents are targeted to hepatocytes with ligands that bind to surface expressed asialoglycoprotein receptors (ASGR) or components thereof (e.g., ASGR1, ASGR2).
- ASGR asialoglycoprotein receptors
- antisense oligonucleotides or RNAi agents can be specifically targeted to the liver by using ligands that bind to or interact with proteins expressed on the surface of hepatocytes.
- the ligand may include an antigen binding protein (e.g., an antibody or a binding fragment thereof (e.g., Fab, scFv)) that specifically binds to receptors expressed on hepatocytes, such as asialoglycoprotein receptors and LDL receptors.
- the ligand includes an antibody or a binding fragment thereof that specifically binds to ASGR1 and/or ASGR2.
- the ligand includes a Fab fragment of an antibody that specifically binds to ASGR1 and/or ASGR2.
- the ligand includes a single-chain variable antibody fragment (scFv fragment) of an antibody that specifically binds to ASGR1 and/or ASGR2.
- scFv fragment single-chain variable antibody fragment
- Exemplary antibodies and binding fragments thereof that specifically bind to ASGR1 that can be used as ligands for targeting the antisense oligonucleotides or RNAi agents of the present invention to the liver are described in WO 2017/058944, which is incorporated herein by reference in its entirety.
- Other antibodies or binding fragments thereof that specifically bind to ASGR1, LDL receptor, or other liver surface expressed proteins suitable for use as ligands in the RNAi agents of the invention are purchased from commercial sources.
- antisense oligonucleotide or RNAi agent when used for extrahepatic delivery, including but not limited to, central nervous system (CNS) (such as brain, spine or eye), muscle, lung or fat, antisense oligonucleotide or RNAi agent may include one or more lipophilic groups, and the lipophilic group is conjugated to one or more positions of oligonucleotide or RNAi agent antisense strand and/or sense strand.
- lipophilic group can be connected to antisense oligonucleotide or RNAi agent antisense strand and/or sense strand via core base, sugar moiety or internucleoside bond.
- the lipophilic group with phosphoramidite group is coupled with 3' end or 5' end of sense strand or antisense strand in the last synthesis cycle.
- the octanol-water partition coefficient of lipophilic group exceeds 0,1,1.5,2,3,4,5 or 10.
- the ligand is a lipophilic group, which is preferably selected from lipids, vitamins, steroids, C 5 -C 30 saturated or unsaturated fatty acids, C 5 -C 30 alkyl groups, and polypeptides comprising at least one positively charged amino acid residue; the lipophilic group is more preferably selected from cholesterol, C 16 saturated or unsaturated fatty acids, C 16 alkyl groups, C 22 saturated or unsaturated fatty acids or C 22 alkyl groups.
- Suitable lipophilic groups may be aliphatic, alicyclic, polyalicyclic compounds, steroids, straight-chain or branched aliphatic hydrocarbons.
- Exemplary lipophilic groups are, for example, lipophilic groups Y132 to Y135, Y158, Y165 to Y168, L10, L57, L321, L322, Q361 to Q367, Q361s to Q367s, Q370, Q377 to Q379, Q383, etc. described in WO 2021/092371.
- ligands that can be linked to the antisense oligonucleotides or RNAi agents of the present invention can be found in WO2017053995, WO2019217459, WO2021092371, WO2017053995, WO2010039548, WO2023064530, WO2022213118 and WO2019079386, the entire contents of each of which are incorporated herein by reference.
- part includes carbohydrate.
- Carbohydrate refers to a compound composed of one or more monosaccharide units with at least 6 carbon atoms (can be straight chain, branched or cyclic), each carbon atom is connected with oxygen, nitrogen or sulfur atoms.
- Carbohydrate includes but is not limited to sugar (for example, monosaccharide, disaccharide, trisaccharide, tetrasaccharide and oligosaccharide containing about 4,5,6,7,8 or 9 monosaccharide units) and polysaccharide (such as starch, glycogen, cellulose and polysaccharide glue).
- the carbohydrate that is incorporated into the part is selected from pentose, hexose or heptose and includes disaccharides and trisaccharides of such monosaccharide units.
- the carbohydrate that is incorporated into the part is amino sugar, for example aminogalactose, glucosamine, N-acetylgalactosamine and N-acetylglucosamine.
- the ligand comprises a hexose or a hexosamine.
- the hexose may be selected from glucose, galactose, mannose, fucose or fructose.
- the hexosamine may be selected from fructosamine, galactosamine, glucosamine or mannosamine.
- the ligand comprises glucose, galactose, galactosamine or glucosamine.
- the ligand comprises glucose, glucosamine or N-acetylglucosamine.
- the ligand comprises galactose, galactosamine or N-acetylgalactosamine.
- ligands comprising glucose, galactose and N-acetylgalactosamine (GalNAc) are particularly effective in targeting RNA to hepatocytes because these ligands bind to ASGR expressed on the surface of hepatocytes.
- GalNAc- or galactose-containing ligands that can be incorporated into the antisense oligonucleotides or RNAi agents of the invention are described in USP 7,491,805, 8,106,022, and 8,877,917; U.S. Patent Publication No. US20030130186; and WIPO Publication No. WO 2013/166155, all of which are incorporated herein by reference in their entirety.
- the ligand includes a multivalent carbohydrate portion.
- a “multivalent carbohydrate portion” refers to a portion comprising two or more carbohydrate units that can independently bind or interact with other molecules.
- a multivalent carbohydrate portion includes two or more binding domains consisting of carbohydrates, which can bind to two or more different molecules or two or more different sites on the same molecule.
- the "valence" of a carbohydrate portion indicates the number of single binding domains within the carbohydrate portion.
- the terms “monovalent,” “divalent,” “trivalent,” and “tetravalent” refer to carbohydrate portions having one, two, three, and four binding domains, respectively, relative to a carbohydrate portion.
- the multivalent N-acetylgalactosamine moiety is trivalent or tetravalent. In another specific embodiment, the multivalent galactose moiety is trivalent or tetravalent. Exemplary trivalent and tetravalent GalNAc-containing ligands for incorporation into antisense oligonucleotides or RNAi agents of the present invention are described in detail below.
- the ligand can also include an integrin ligand, such as a ligand that specifically binds to an integrin (including but not limited to ⁇ V ⁇ 6).
- integrin ligands are, for example, those mentioned in WO2019089765A1 or WO2022056286A1, the entire contents of which are incorporated herein by reference.
- the ligand may also include a transferrin receptor 1 (TfR1) ligand, such as an anti-TfR1 antibody or polypeptide.
- TfR1 ligands are, for example, the TfR1 antibodies described in WO2022147209A1 or WO2021154476A1, or the bicyclic peptide ligands described in WO2022101633A1. The entire contents of these patent documents are incorporated herein by reference.
- the ligand can be directly or indirectly connected or conjugated to the RNA molecule of antisense oligonucleotide or RNAi agent.
- the ligand is directly covalently connected to the sense strand or antisense strand of antisense oligonucleotide or RNAi agent.
- the ligand is covalently connected to the sense strand or antisense strand of antisense oligonucleotide or RNAi agent by a joint.
- the ligand can be connected to the core base, sugar moiety or internucleotide junction of the sense strand or antisense strand of antisense oligonucleotide or RNAi agent of the present invention.
- the ligand can be connected to the 3' or 5' end of the sense strand or antisense strand. In certain embodiments, the ligand is covalently attached to the 5' end of the sense strand. In such embodiments, the ligand is attached to the 5'-terminal nucleotide of the sense strand. In these and other embodiments, the ligand is attached to the 5'-position of the 5'-terminal nucleotide of the sense strand. In other embodiments, the ligand is covalently attached to the 3' end of the sense strand. For example, in some embodiments, the ligand is attached to the 3'-terminal nucleotide of the sense strand.
- the ligand is attached to the 3'-position of the 3'-terminal nucleotide of the sense strand. In alternative embodiments, the ligand is attached near the 3' end of the sense strand, but before one or more terminal nucleotides (i.e., before 1, 2, 3 or 4 terminal nucleotides). In some embodiments, the ligand is attached to the 2'-position of the sugar of the 3'-terminal nucleotide of the sense strand. In other embodiments, the ligand is attached to the 2'-position of the sugar of the 5'-terminal nucleotide of the sense strand.
- the ligand is connected to a sense strand or an antisense strand by a joint.
- joint refers to an atom or a group of atoms by which a ligand is covalently connected to a polynucleotide component of an antisense oligonucleotide or RNAi agent.
- the length of the joint can be about 1 to about 30 atoms, about 2 to about 28 atoms, about 3 to about 26 atoms, about 4 to about 24 atoms, about 6 to about 20 atoms, about 7 to about 20 atoms, about 8 to about 20 atoms, about 8 to about 18 atoms, and about 12 to about 18 atoms.
- the joint can include a bifunctional linking portion, which generally includes an alkyl portion with two functional groups.
- One of the functional groups is selected to be combined with a compound of interest (such as the sense or antisense strand of an RNAi agent chain), and another functional group is selected to be combined with substantially any selected group, such as a ligand as described herein.
- the joint includes an oligomer of a chain structure or a repeating unit, such as ethylene glycol or an amino acid unit.
- Examples of functional groups commonly used in bifunctional linking moieties include, but are not limited to, electrophiles for reacting with nucleophilic groups and nucleophiles for reacting with electrophilic groups.
- the bifunctional linking moiety includes amino, hydroxyl, carboxylic acid, thiol, unsaturated bonds (e.g., double bonds or triple bonds), etc.
- Linkers that can be used to link the ligand to the sense or antisense strand of the antisense oligonucleotide or RNAi agent of the invention include, but are not limited to, pyrrolidine, 8-amino-3,6-dioxooctanoic acid, succinimidyl-4-(N-maleimidomethyl)cyclohexane-1-carboxylic acid, 6-aminohexanoic acid, substituted C 1 -C 20 alkyl, substituted or unsubstituted C 2 -C 20 alkenyl, or substituted or unsubstituted C 2 -C 20 alkynyl.
- Preferred substituents for such linkers include, but are not limited to, hydroxyl, amino, alkoxy, carboxyl, benzyl, phenyl, nitro, thiol, thioalkoxy, halogen, alkyl, aryl, alkenyl, and alkynyl.
- the joint is cleavable.
- a cleavable joint is one that is sufficiently stable outside the cell but is cleaved to release two parts that are combined together by a joint when entering the target cell.
- a cleavable joint is at least 10 times, 20 times, 30 times, 40 times, 50 times, 60 times, 70 times, 80 times, 90 times or more, or at least 100 times faster than cracking in the blood of the experimenter in the target cell or under the first reference condition (it can, for example, be selected as a simulation or represent intracellular conditions).
- Cleavable joints are susceptible to the effects of cleavage agents, such as pH, redox potential, or the presence of degradation molecules.
- cleavage agents are more prevalent in cells than in serum or blood, or are found at higher levels or activities in cells.
- cleavage agents include: redox agents selected for specific substrates or without substrate specificity, including, for example, oxidases or reductases present in cells; esterases; endosomes or reagents that can produce an acidic environment, such as those that result in a pH of 5 or less; enzymes that can hydrolyze or degrade acid-cleavable joints as general acids, peptidases (which can be substrate-specific), and phosphatases.
- Cleaving joints may include pH-sensitive parts.
- the pH of human serum is 7.4, while the average intracellular pH is slightly lower, ranging from about 7.1-7.3.
- Endosomes have a more acidic pH
- lysosomes have a more acidic pH (about 5.0) in the range of 5.5-6.0.
- Some joints will have a cleavable group that is cleaved at a preferred pH, thereby releasing the RNA molecule from the ligand in the cell, or releasing it into the desired organelle of the cell.
- the joint may include a cleavable group that can be cleaved by a specific enzyme. The type of cleavable group incorporated into the joint may depend on the cell to be targeted.
- a liver targeting ligand may be connected to an RNA molecule by a joint including an ester group.
- Hepatocytes are rich in esterases, so joints are more effectively cleaved in hepatocytes than in cell types that are not rich in esterases.
- Other types of cells rich in esterases include cells of the lung, renal cortex, and testis.
- a joint containing a peptide bond may be used.
- linkers suitable for attaching ligands to the sense or antisense strands in the antisense oligonucleotides or RNAi agents of the invention are known in the art, such as those described in U.S. Pat. Nos. 7,723,509, 8,017,762, 8,828,956, 8,877,917, and 9,181,551, all of which are incorporated herein by reference in their entirety.
- the ligand covalently attached to the sense strand or antisense strand of the antisense oligonucleotide or RNAi agent of the present invention includes a GalNAc moiety, such as a multivalent GalNAc.
- the multivalent GalNAc moiety is a trivalent GalNAc and is attached to the 3' end of the sense strand.
- the multivalent GalNAc moiety is a trivalent GalNAc and is attached to the 5' end of the sense strand.
- the multivalent GalNAc moiety is a tetravalent GalNAc moiety and is attached to the 3' end of the sense strand.
- the multivalent GalNAc moiety is a tetravalent GalNAc moiety and is attached to the 5' end of the sense strand.
- the ligand is L96, NAG25, and NAG37, each having the structural formula shown below, wherein the wavy lines represent the position of attachment to the sense or antisense strand of the antisense oligonucleotide or RNAi agent.
- the composition and method for preparing the pharmaceutical composition depend on many standards, including but not limited to route of administration, the type and degree of the disease to be treated or the condition or the dosage to be administered.
- the pharmaceutical composition is prepared based on the expected delivery route.
- the pharmaceutical composition is formulated for parenteral delivery.
- Parenteral administration forms include intravenous, intraarterial, subcutaneous, intrathecal, intraperitoneal or intramuscular injection or infusion.
- the pharmaceutical composition is formulated for intravenous delivery.
- the pharmaceutical composition may include a lipid-based delivery vehicle.
- the pharmaceutical composition is formulated for subcutaneous delivery.
- the pharmaceutical composition may include a targeting ligand (such as a ligand containing GalNAc or an antibody as described herein).
- the pharmaceutical composition comprises an effective amount of antisense oligonucleotides or RNAi agents as described herein.
- Effective amount refers to an amount sufficient to produce a beneficial or desired clinical outcome.
- an effective amount is an amount sufficient to reduce the expression of the ACVR2B gene in a specific tissue or cell type (e.g., liver or hepatocyte) of the patient.
- the effective amount of the antisense oligonucleotides or RNAi agents of the present invention can be from about 0.01 mg/kg body weight to about 100 mg/kg body weight, and can be administered daily, weekly, monthly or at longer intervals.
- Accurately determining a specific effective dosage and dosing frequency may be based on several factors, including the patient's body size, age and general condition, the type of disease to be treated (e.g., myocardial infarction, coronary artery disease, peripheral artery disease, stroke), the specific antisense oligonucleotides or RNAi agents used, and the route of administration.
- the administration of the pharmaceutical composition of the present invention can be carried out by any common route, as long as the target tissue can be obtained by the route.
- routes include, but are not limited to, parenteral (e.g., subcutaneous, intramuscular, intraperitoneal or intravenous), oral, nasal, oral, intradermal, transdermal and sublingual routes, or by direct injection into liver tissue or by delivery through the portal vein.
- the pharmaceutical composition is parenteral.
- the pharmaceutical composition is administered intravenously.
- the pharmaceutical composition is subcutaneously administered.
- the preferred colloidal system used as an in vivo delivery vehicle is a liposome (i.e., an artificial membrane vesicle).
- the RNAi agent of the present invention can be encapsulated in a liposome, or can form a complex with it, particularly with a cationic liposome.
- the RNAi agent of the present invention can be complexed with lipids, particularly with cationic lipids.
- Suitable cationic lipids are, for example, diol tetramethylaminopropyl (DOTAP) and diol phosphatidylethanolamine (DOTMA).
- Antisense oligonucleotides or RNAi agents of the present invention can be completely encapsulated in lipid formulations, such as LNP or other nucleic acid-lipid particles.
- LNP refers to stable nucleic acid-lipid particles.
- LNP generally comprises cationic lipids, non-cationic lipids and lipids (such as PEG-lipid conjugates) that prevent particle aggregation.
- LNP is very useful for systemic applications because they show extended circulation time after intravenous (i.v.) injection and accumulate in distal sites (such as sites physically separated from the administration site).
- LNP includes "pSPLP", which includes the encapsulated condensing agent-nucleic acid complex as described in WO00/03683.
- the ratio of lipid to drug (mass/mass ratio) (e.g., lipid to RNAi agent) will be in the range of about 1:1 to about 50:1, about 1:1 to about 25:1, about 3:1 to about 15:1, about 4:1 to about 10:1, about 5:1 to about 9:1 or about 6:1 to about 9:1.
- the cationic lipid can be, for example, N,N-dioleyl-N,N-dimethylammonium chloride (DODAC), N,N-distearyl-N,N-dimethylammonium bromide (DDAB), N-(1-(2,3-dioleyloxy)propyl)-N,N,N-trimethylammonium chloride (DOTAP), N-(1-(2,3-dioleyloxy)propyl)-N,N,N-trimethylammonium chloride (DOTMA), N,N-dimethyl-2,3-dioleyloxy)propylamine (DODMA), 1,2-dioleyloxy-N,N-dimethylaminopropane (DLinDMA), 1,2-dioleyloxy-N,N-dimethylaminopropane (DLenDMA), 1,2-dioleylcarbamoyloxy-3-dimethylaminopropane (DLinDMA
- the compound 2,2-dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane can be used to prepare lipid-siRNA nanoparticles.
- the lipid-siRNA particles comprise 40% 2,2-dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane: 10% DSPC: 40% cholesterol: 10% PEG-C-DOMG (molar percentage), a particle size of 63.0 ⁇ 20nm, and a siRNA/lipid ratio of 0.027.
- the ionizable/non-cationic lipids can be anionic lipids or neutral lipids, including but not limited to distearoylphosphatidylcholine (DSPC), dioleoylphosphatidylcholine (DOPC), dipalmitoylphosphatidylcholine (DPPC), dioleoylphosphatidylglycerol (DOPG), dipalmitoyl DP-acylglycerol phosphatidylethanolamine (DOPE), palmitoyloleoylphosphatidylcholine (POPC), palmitoyloleoylphosphatidylethanolamine (POPE), oleoylphosphatidylcholine (POPC), palmitoyloleoylphosphatidylethanolamine (POPE), oleoylphosphatidylcholine (POPC), palmitoyloleoylphosphatidylethanolamine (POPE), oleoylphosphat
- the coupled lipids that inhibit particle aggregation can be, for example, polyethylene glycol (PEG)-lipids, including but not limited to PEG-diacylglycerols (DAG), PEG-dialkoxypropyls (DAA), PEG-phospholipids, PEG-ceramides (Cer) or mixtures thereof.
- PEG-DAA conjugates can be, for example, PEG-docosyloxypropyls (C12), PEG-dimyristyloxypropyls (C14), PEG-dipalmityloxypropyls (C14) or PEG-distearyloxypropyls (C18).
- Prevent particle aggregation and coupled lipids can be 0mol% to about 20mol% of the total lipids present in the particle, or about 2mol%.
- nucleic acid-lipid particles further include cholesterol, for example, accounting for about 10mol% to about 60mol% of the total lipids present in the particle, or about 48mol%.
- lipidoid ND98 ⁇ 4HCl molecular weight 1487) (see U.S. Patent Application No. 12/056,230, incorporated herein by reference), cholesterol (Sigma-Aldrich), and PEG-ceramide C16 (Avanti Polar Lipids) can be used to prepare lipid-dsRNA nanoparticles (i.e., LNP01 particles).
- Each stock solution in ethanol can be prepared as follows: ND98, 133 mg/ml; cholesterol, 25 mg/ml, PEG-ceramide C16, 100 mg/ml.
- the stock solutions of ND98, cholesterol, and PEG-ceramide C16 can then be mixed in a molar ratio of, for example, 42:48:10.
- the combined lipid solution can be mixed with aqueous siRNA (e.g., in sodium acetate at pH 5) such that the final ethanol concentration is about 35-45% and the final sodium acetate concentration is about 100-300 mM.
- aqueous siRNA e.g., in sodium acetate at pH 5
- the lipid-siRNA nanoparticles typically form spontaneously upon mixing.
- lipid-siRNA formulations can be found in, for example, WO2009/127060 (SNALP), PCT/US2010/022614 (XTC), US2010/0324120 (MC3), PCT/US09/63933 (ALNY-100), and WO2010/129709 (C12-200).
- the antisense oligonucleotides or RNAi agents of the present invention can be linked to a cell penetrating peptide (CPP), which may include at least one positively charged amino acid or ionizable amino acid, such as arginine, to form a peptide-oligonucleotide conjugate.
- CPP cell penetrating peptide
- Suitable CPPs for forming peptide-oligonucleotide conjugates can be found, for example, in WO2022213118A1 or WO2019079386A1, which are incorporated herein by reference in their entirety.
- compositions suitable for injection include, for example, sterile aqueous solutions or dispersions and sterile powders for the immediate preparation of sterile injection solutions or dispersions.
- these preparations are sterile and, to a certain extent, fluid and easy to inject.
- the preparation should remain stable under production and storage conditions and should be preserved to prevent the contamination of microorganisms such as bacteria and fungi.
- Suitable solvents or dispersion media may include, for example, water, ethanol, polyols (e.g., glycerol, propylene glycol and liquid polyethylene glycol, etc.), their suitable mixtures and vegetable oils.
- appropriate fluidity can be maintained by using a coating such as lecithin, by maintaining the desired particle size in the case of dispersion, and by using a surfactant.
- a coating such as lecithin
- surfactant for example, a surfactant for maintaining the desired particle size in the case of dispersion
- the effects of microorganisms can be prevented by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, sorbic acid, thimerosal, etc.
- isotonic agents are preferably included, such as sugar or sodium chloride.
- the extended absorption of injectable compositions can be achieved by using agents that delay absorption in the composition, such as aluminum monostearate and gelatin.
- Sterile injectable solutions can be prepared by adding an appropriate amount of the active compound to a solvent together with any other ingredients (e.g., those listed above) and then filtering and sterilizing.
- dispersions are prepared by adding various sterilized active ingredients to a dispersion medium containing an alkaline dispersion medium and other desired ingredients, e.g., as described above.
- preferred preparation methods include vacuum drying and freeze drying techniques, which produce a powder of the active ingredient and any additional desired ingredients from a previously sterile filtered solution thereof.
- compositions of the present invention can be generally prepared in neutral form or salt form.
- Pharmaceutically acceptable salts include, for example, acid addition salts (formed by free amino groups) derived from inorganic acids (such as hydrochloric acid or phosphoric acid) or organic acids (such as acetic acid, oxalic acid, tartaric acid, mandelic acid, etc.). Salts formed with free carboxyl groups can also be derived from inorganic bases (such as sodium, potassium, ammonium, calcium or iron oxide) or organic bases (such as isopropylamine, trimethylamine, histidine, procaine, etc.).
- the antisense oligonucleotides or RNAi agents of the present invention are formulated as sodium salts.
- an aqueous solution for parenteral administration in the form of an aqueous solution, the solution is usually appropriately buffered, and the liquid diluent is first made isotonic with, for example, sufficient saline or glucose.
- aqueous solution can be used for, for example, intravenous, intramuscular, subcutaneous and intraperitoneal administration.
- a sterile aqueous medium is used.
- a single dose can be dissolved in 1 ml of isotonic NaCl solution and added to 1000 ml of subcutaneous infusion liquid, or injected at the infusion site of the suggestion.
- the preparation should meet the sterility, pyrogenicity, general safety and purity standards required by the local Food and Drug Administration standards.
- the pharmaceutical composition of the present invention comprises sterile saline solution and antisense oligonucleotide or RNAi agent as described herein or consists of the two.
- the pharmaceutical composition of the present invention comprises antisense oligonucleotide or RNAi agent as described herein and sterile water (e.g., water for injection, WFI) or consists of the two.
- the pharmaceutical composition of the present invention comprises antisense oligonucleotide or RNAi agent as described herein and phosphate buffered saline (PBS) or consists of it.
- PBS phosphate buffered saline
- the pharmaceutical composition of the present invention is packaged with or stored in a drug delivery device.
- Devices for injectable formulations include, but are not limited to, injection ports, prefilled syringes, automatic injectors, injection pumps, in vivo injectors, and injection pens.
- Equipment for atomized or powdered formulations includes, but is not limited to, inhalers, insufflators, aspirators, and the like. Therefore, the present invention includes a drug delivery device containing a pharmaceutical composition of the present invention for treating or preventing one or more diseases or conditions described herein.
- the present invention provides a method for reducing or inhibiting the expression of the ACVR2B gene in a cell by contacting the cell with any one of the antisense oligonucleotides or RNAi agents described herein.
- the cell can be in vitro or in vivo.
- ACVR2B gene expression can be assessed by measuring the amount or level of ACVR2B mRNA or ACVR2B-C protein.
- the reduction in ACVR2B expression in cells or animals treated with the antisense oligonucleotides or RNAi agents of the present invention can be determined relative to the expression of ACVR2B in cells and animals not treated with the RNAi agent or treated with a control RNAi agent.
- reduction in ACVR2B expression is assessed by (a) measuring the amount or level of ACVR2B mRNA in cells treated with an RNAi agent of the invention, (b) measuring the amount or level of ACVR2B mRNA in cells treated with a control RNAi agent (e.g., an RNAi agent directed to an RNA molecule not expressed in the cell or an RNAi agent with a nonsense or scrambled sequence) or no RNAi agent, and (c) comparing the ACVR2B mRNA level measured in the treated cells in (a) to the ACVR2B mRNA level in the control cells in (b).
- a control RNAi agent e.g., an RNAi agent directed to an RNA molecule not expressed in the cell or an RNAi agent with a nonsense or scrambled sequence
- the ACVR2B mRNA levels in the treated cells and the control cells can be normalized to the RNA level of a control gene (e.g., 18S ribosomal RNA or a housekeeping gene).
- ACVR2B mRNA levels can be measured by a variety of methods, including Northern blot analysis, nuclease protection assays, fluorescence in situ hybridization (FISH), reverse transcriptase (RT)-PCR, real-time RT-PCR, quantitative PCR, droplet digital PCR, and the like.
- the method of assessing ACVR2B expression levels is performed in vitro in cells that naturally express the ACVR2B gene or in cells that have been engineered to express ACVR2B.
- the method of assessing ACVR2B expression levels is performed in vivo.
- the antisense oligonucleotide or RNAi agent and any control antisense oligonucleotide or RNAi agent can be administered to an animal (e.g., a transgenic animal or non-human primate expressing an ACVR2B gene), and ACVR2B mRNA or ACVR2B protein levels are assessed in tissues harvested from the animal after treatment.
- biomarkers or functional phenotypes associated with ACVR2B expression can be assessed in treated animals.
- ACVR2B protein is the expression product of ACVR2B mRNA in tissues. Therefore, the level of ACVR2B protein can be measured in animals treated with the antisense oligonucleotide or RNAi agent of the invention to assess the functional efficacy of reducing ACVR2B expression.
- the expression of ACVR2B in a cell is reduced by at least 40%, at least 45%, or at least 50% by an antisense oligonucleotide or RNAi agent of the invention. In some embodiments, the expression of ACVR2B in a cell is reduced by at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, or at least 85% by an antisense oligonucleotide or RNAi agent of the invention.
- the expression of ACVR2B in a cell is reduced by about 90% or more, such as 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more by an antisense oligonucleotide or RNAi agent of the invention.
- the percentage reduction in ACVR2B expression can be measured by any of the methods described herein and other methods known in the art.
- the present invention provides methods for reducing or inhibiting the expression of the ACVR2B gene, thereby reducing or inhibiting the production of ACVR2B protein, in patients in need thereof, as well as methods for treating or preventing diseases or conditions associated with ACVR2B expression or activity.
- Diseases or conditions mediated by abnormal expression of ACVR2B refers to diseases or conditions in which the expression level of ACVR2B is altered, or conditions or conditions in which elevated expression levels of ACVR2B are associated with an increased risk of developing the disease or condition.
- the antisense oligonucleotides or RNAi agents of the present invention are particularly useful for reducing the level of ACVR2B.
- the present invention provides a method for reducing ACVR2B expression in a patient in need thereof, comprising administering to the patient any antisense oligonucleotide or RNAi agent described herein.
- the expression level of ACVR2B in the patient's cells is reduced compared to the expression level of ACVR2B in the patient who did not receive the antisense oligonucleotide or RNAi agent, or compared to the expression level of ACVR2B in the patient before administration of the antisense oligonucleotide or RNAi agent.
- the expression of ACVR2B in the patient is reduced by at least 30%, at least 35%, at least 40%, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85% or at least 90%, for example 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99%.
- the percent reduction in ACVR2B expression can be measured by any of the methods described herein as well as other methods known in the art. In certain embodiments, the percent reduction in ACVR2B expression is determined by assessing the patient's ACVR2B protein levels according to the methods described herein.
- the disease is chronic kidney disease. In one embodiment, the disease is acute kidney injury. In one embodiment, the disease is postoperative healing of trauma. In one embodiment, the disease is a maxillofacial tumor. In one embodiment, the disease is gestational eclampsia. In one embodiment, the disease is liver fibrosis. In one embodiment, the disease is atherosclerosis. In one embodiment, the disease is ischemic stroke. In one embodiment, the disease is Alzheimer's disease.
- the synthesis method of oligonucleotides is the same as the conventional phosphoramidite solid phase synthesis method (all synthesized by Suzhou Beixin Biotechnology Co., Ltd.), including four steps of deprotection, coupling, capping, oxidation or sulfurization.
- the solid phase carrier is used as the starting cycle, and the nucleoside monomers are connected one by one from 3'-5'.
- the raw materials of nucleoside phosphoramidite monomers 2'-OTBDMS, 2'-F RNA, 2'-OMe RNA, etc. were purchased from Shanghai Zhaowei Technology Development Co., Ltd.
- Transfection reagent dilution dilute the transfection reagent with Opti-MEM reduced serum medium at a ratio of 48.5:1.5, mix gently and let it stand at room temperature for 15 minutes.
- Transfection complex preparation mix the diluted compound and transfection reagent in equal volumes and let it stand at room temperature for 15 minutes. Add 20 ⁇ l of transfection complex to each well in a 96-well cell plate. Inoculate cells: select A-673 cells with a cell confluence of about 80%, trypsinize, resuspend the cells in complete medium without penicillin and streptomycin, and count. Prepare a cell suspension with a concentration of 150,000 cells/ml, and add 100 ⁇ l of cell suspension to each well in the cell plate containing the transfection complex. The cells were cultured in a 37°C 5% CO 2 incubator for 24hrs.
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Abstract
Description
本发明涉及抑制细胞中激活素IIB型受体(ACVR2b)基因表达的核酸,包括反义寡核苷酸(ASO)和RNAi剂(如siRNA)及其药物组合物。本发明还涉及这些核酸的医药用途。The present invention relates to nucleic acids for inhibiting the expression of activin type IIB receptor (ACVR2b) gene in cells, including antisense oligonucleotides (ASO) and RNAi agents (such as siRNA) and pharmaceutical compositions thereof. The present invention also relates to the medical use of these nucleic acids.
激活素IIB型受体(ACVR2B)是一种转化生长因子-β(TGF-β)超家族II型丝氨酸/苏氨酸激酶受体。TGF-β超家族包括TGF-β、激活素、抑制素(INH)、骨形成蛋白(BMP)、生长分化因子(GDP)、肌肉生长抑制素(MSTN)、卵泡抑素(FST)、Smad蛋白家族等分泌型多肽信号分子。TGF-β信号转导通路的作用机理是TGF-β超家族成员结合细胞表面的ACVR2B,然后召集激活素I型受体(ActRI),形成的配体受体复合物激活ActRI激酶(ALK4/5),导致转录因子Smad蛋白家族(主要是Smad2和Smad3)发生磷酸化,再与Smad4结合形成复合物进入细胞核,调控多种转录因子的靶基因,从而调控多种细胞的增殖、分化、迁移和凋亡。TGF-β信号转导通路在胚胎的发育、骨骼的形成、肌肉的生长发育过程中具有重要的调节作用。研究发现,临床难治性疾病杜氏肌营养不良(DMD)模型小鼠关键基因Dystrophin的遗传性缺失伴有TGF-β表达的显著增加;与此研究结果相似,马凡综合征(MFS)疾病模型小鼠关键基因FBN1的遗传性缺失也伴有TGF-β表达的明显增高。两种模型动物的骨骼肌均缺乏损伤后的修复再生能力,而TGF-β通路信号被阻断后,骨骼肌可以重新恢复其修复再生功能。Activin type IIB receptor (ACVR2B) is a type II serine/threonine kinase receptor of the transforming growth factor-β (TGF-β) superfamily. The TGF-β superfamily includes secreted polypeptide signaling molecules such as TGF-β, activin, inhibin (INH), bone morphogenetic protein (BMP), growth differentiation factor (GDP), myostatin (MSTN), follistatin (FST), and the Smad protein family. The mechanism of action of the TGF-β signal transduction pathway is that TGF-β superfamily members bind to ACVR2B on the cell surface, then recruit activin type I receptor (ActRI), and the formed ligand receptor complex activates ActRI kinase (ALK4/5), leading to phosphorylation of the transcription factor Smad protein family (mainly Smad2 and Smad3), which then binds to Smad4 to form a complex and enter the cell nucleus, regulating the target genes of multiple transcription factors, thereby regulating the proliferation, differentiation, migration and apoptosis of multiple cells. The TGF-β signal transduction pathway plays an important regulatory role in embryonic development, bone formation, and muscle growth and development. The study found that the genetic loss of Dystrophin, a key gene in the clinically intractable Duchenne muscular dystrophy (DMD) model mouse, was accompanied by a significant increase in TGF-β expression; similar to this research result, the genetic loss of FBN1, a key gene in the Marfan syndrome (MFS) disease model mouse, was also accompanied by a significant increase in TGF-β expression. The skeletal muscles of both model animals lack the ability to repair and regenerate after injury, but after the TGF-β pathway signal is blocked, the skeletal muscles can restore their repair and regeneration function.
肌肉萎缩是一种使人衰弱并危及生命的疾病状态,与多种慢性、神经性、遗传性、炎症性、纤维化或感染性病症的发生有关,其中包括肌肉萎缩症、肌萎缩性脊髓侧索硬化症(ALS)、肌炎、癌症、类风湿性关节炎、骨关节炎、糖尿病、肌肉疏松性肥胖、雄激素缺乏症、皮质类固醇肌病、炎症性肠病、肝硬化、慢性阻塞性肺病、肺纤维化、慢性肾病、创伤、心肌病、慢性心力衰竭和艾滋病病毒感染等。ACVR2B下游的SMAD通路可以调控许多肌肉生成基因,例如生肌决定因子(MyoD)、肌细胞生成素(myogenin)和生肌因子5(Myf5)等,这些基因参与细胞肥大、增殖或分化的过程。研究表明ACVR2B的抑制会导致肌肉的快速大量生长,因此常被用于治疗肌肉萎缩和肌肉营养不良等疾病。Muscle atrophy is a debilitating and life-threatening disease state associated with a variety of chronic, neurological, genetic, inflammatory, fibrotic or infectious conditions, including muscular dystrophy, amyotrophic lateral sclerosis (ALS), myositis, cancer, rheumatoid arthritis, osteoarthritis, diabetes, muscle-loosening obesity, androgen deficiency, corticosteroid myopathy, inflammatory bowel disease, cirrhosis, chronic obstructive pulmonary disease, pulmonary fibrosis, chronic kidney disease, trauma, cardiomyopathy, chronic heart failure and HIV infection. The SMAD pathway downstream of ACVR2B can regulate many muscle-building genes, such as myogenic determinant (MyoD), myogenin and myogenic factor 5 (Myf5), which are involved in the process of cell hypertrophy, proliferation or differentiation. Studies have shown that inhibition of ACVR2B leads to rapid and massive muscle growth, and is therefore often used to treat diseases such as muscle atrophy and muscular dystrophy.
研究表明,通过抑制ACVR2B来抑制MSTN通路的信号传导可以降低小鼠体内的总体脂肪含量,并改善其葡萄糖代谢,增加胰岛素敏感性和能量消耗,甚至可以促进白色脂肪向棕色脂肪转变,进而发挥系统性的抗糖尿病和肥胖功能。此外,越来越多的证据表明,MSTN/激活素通路不仅影响心脏和血管,也会影血管重塑、细胞衰老和纤维化。因此,MSTN通路的抑制可能对慢性肾脏疾病(CKD)患者的消瘦、炎症、血管损伤以及可能的渐进性肾功能障碍发挥重要作用。Studies have shown that inhibiting the signaling of the MSTN pathway by inhibiting ACVR2B can reduce the overall fat content in mice, improve their glucose metabolism, increase insulin sensitivity and energy expenditure, and even promote the transformation of white fat to brown fat, thereby exerting systemic anti-diabetes and anti-obesity functions. In addition, increasing evidence shows that the MSTN/activin pathway not only affects the heart and blood vessels, but also affects vascular remodeling, cell aging and fibrosis. Therefore, inhibition of the MSTN pathway may play an important role in weight loss, inflammation, vascular damage and possible progressive renal dysfunction in patients with chronic kidney disease (CKD).
在ACVR2B的众多配体中,激活素A可促进垂体合成并分泌促性腺激素调节生殖生理活动;除表达于生殖器官,也存在于其他器官和系统,如脑、肝脏、肺、肾脏、骨骼和肠道等。激活素A在肾脏发育过程中表达,对肾脏的发育和修复过程具有重要作用,它可以使小鼠输尿管芽分枝出现延迟以及体外培养的小鼠后肾体积缩小,是肾脏发育的负调控因子,参与肾脏纤维化等肾脏病理过程。慢性肾脏疾病中激活素A水平升高会导致贫血,还能促进肾脏纤维化的发生,加重疾病的进展。此外,激活素A还可加重系统性红斑狼疮、血管炎和多发性骨髓瘤(MM)等疾病引起的肾脏损伤。通过抑制ACVR2A和ACVR2B来降低激活素A的水平能够预防急性肾损伤、缓解肾性贫血、改善矿物质骨异常并抑制肾脏纤维化发生。Among the many ligands of ACVR2B, activin A can promote the pituitary to synthesize and secrete gonadotropin to regulate reproductive physiological activities; in addition to being expressed in reproductive organs, it is also present in other organs and systems, such as the brain, liver, lungs, kidneys, bones, and intestines. Activin A is expressed during kidney development and plays an important role in kidney development and repair. It can delay the branching of mouse ureteric buds and reduce the size of mouse metanephros cultured in vitro. It is a negative regulator of kidney development and participates in kidney pathological processes such as renal fibrosis. Elevated levels of activin A in chronic kidney disease can lead to anemia, promote the occurrence of renal fibrosis, and aggravate the progression of the disease. In addition, activin A can also aggravate kidney damage caused by diseases such as systemic lupus erythematosus, vasculitis, and multiple myeloma (MM). Reducing the level of activin A by inhibiting ACVR2A and ACVR2B can prevent acute kidney injury, relieve renal anemia, improve mineral bone abnormalities, and inhibit the occurrence of renal fibrosis.
目前针对该靶点尚未有小核酸类药物上市,仍需要开发更好药效、长效性、特异靶向性和/或安全性的此类药物。Currently, there are no small nucleic acid drugs targeting this target on the market, and there is still a need to develop such drugs with better efficacy, long-term effectiveness, specific targeting and/or safety.
本发明致力于通过核酸药物(如siRNA或者ASO)靶向ACVR2B基因,特异性对靶器官中的靶基因和蛋白的高效抑制,可阻断TGF-β及其下游信号通路异常引发的多种疾病,例如肌肉萎缩、肌肉营养不良、肥胖、糖尿病、慢性肾脏疾病、急性肾损伤、外伤术后愈合、颌面部肿瘤、妊娠子痫、肝纤维化、动脉粥样硬化、缺血性脑卒中、阿尔茨海默病等。The present invention is committed to targeting the ACVR2B gene through nucleic acid drugs (such as siRNA or ASO), specifically and efficiently inhibiting target genes and proteins in target organs, and can block a variety of diseases caused by abnormal TGF-β and its downstream signaling pathways, such as muscle atrophy, muscular dystrophy, obesity, diabetes, chronic kidney disease, acute kidney injury, postoperative healing of trauma, maxillofacial tumors, eclampsia during pregnancy, liver fibrosis, atherosclerosis, ischemic stroke, Alzheimer's disease, etc.
本发明的一个方面提供一种反义寡核苷酸,所述反义寡核苷酸包含由12至30个相连的核苷酸组成的寡核苷酸,所述寡核苷酸包含至少8个、至少9个、至少10个、至少11个、至少12个、至少13个、至少14个、至少15个、至少16个、至少17个、至少18个、至少19个或至少20个与编码激活素IIB型受体(ACVR2B)的mRNA的靶区域的相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补的核苷酸。One aspect of the invention provides an antisense oligonucleotide comprising an oligonucleotide consisting of 12 to 30 linked nucleotides, the oligonucleotide comprising at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19 or at least 20 nucleotides that are at least 80%, 85%, 90%, 95% or 100% complementary to an equal length of consecutive nucleotides of a target region of an mRNA encoding an activin type IIB receptor (ACVR2B).
在一些实施方式中,其中所述靶区域为SEQ ID NO:1所示的核苷酸序列的504-554、588-617、648-686、837-866、1234-1268、1360-1403、1503-1532或1545-1574。In some embodiments, the target region is 504-554, 588-617, 648-686, 837-866, 1234-1268, 1360-1403, 1503-1532 or 1545-1574 of the nucleotide sequence shown in SEQ ID NO:1.
在一些实施方式中,其中所述靶区域为SEQ ID NO:1所示的核苷酸序列的504-533、510-539、519-548、525-554、588-617、648-677、653-682、657-686、837-866、1234-1263、1239-1268、1360-1389、1374-1403、1503-1532或1545-1574。在一些实施方式中,其中所述靶区域为SEQ ID NO:1所示的核苷酸序列的509-528、515-534、524-543、530-549、593-612、653-672、658-677、662-681、842-861、1239-1258、1244-1263、1365-1384、1379-1398、1508-1527或1550-1569。In some embodiments, the target region is 504-533, 510-539, 519-548, 525-554, 588-617, 648-677, 653-682, 657-686, 837-866, 1234-1263, 1239-1268, 1360-1389, 1374-1403, 1503-1532 or 1545-1574 of the nucleotide sequence shown in SEQ ID NO:1. In some embodiments, the target region is 509-528, 515-534, 524-543, 530-549, 593-612, 653-672, 658-677, 662-681, 842-861, 1239-1258, 1244-1263, 1365-1384, 1379-1398, 1508-1527 or 1550-1569 of the nucleotide sequence shown in SEQ ID NO:1.
在一些实施方式中,所述寡核苷酸包含SEQ ID NO:3至17中任一个核苷酸序列的至少8个、至少9个、至少10个、至少11个、至少12个、至少13个、至少14个、至少15个、至少16个、至少17个、至少18个、至少19个、或20个连续核苷酸的核苷酸序列。In some embodiments, the oligonucleotide comprises a nucleotide sequence of at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 consecutive nucleotides of any one of SEQ ID NO:3 to 17.
在一些实施方式中,其中当在所述反义寡核苷酸的整个核苷酸序列上测量时,所述反义寡核苷酸具有与SEQ ID NO.1和/或SEQ ID NO.2所示的核苷酸序列至少80%、至少85%、至少90%、至少95%或100%互补的核苷酸序列。In some embodiments, the antisense oligonucleotide has a nucleotide sequence that is at least 80%, at least 85%, at least 90%, at least 95% or 100% complementary to the nucleotide sequence shown in SEQ ID NO.1 and/or SEQ ID NO.2 when measured over the entire nucleotide sequence of the antisense oligonucleotide.
在一些实施方式中,所述反义寡核苷酸包含至少一种选自经修饰的糖部分、经修饰的核碱基部分和经修饰的核苷酸间连接的修饰,优选地,所述反义寡核苷酸包含以下修饰中的一个或多个:(i)至少一个双环糖部分,其中所述双环糖部分优选具有4'-2'桥,所述4'-2'桥优选是cEt或LNA;(ii)至少一个非双环的经修饰的糖部分,优选选自2'-脱氧、2'-F、2'-MOE和2'-OMe糖部分;(iii)经修饰的核苷,优选包括5-甲基胞嘧啶(m5C);和(iv)至少一种糖替代物,优选选自POM、PNA、THP和F-HNA。In some embodiments, the antisense-oligonucleotide comprises at least one modification selected from a modified sugar moiety, a modified nucleobase moiety and a modified internucleotide linkage, preferably, the antisense-oligonucleotide comprises one or more of the following modifications: (i) at least one bicyclic sugar moiety, wherein the bicyclic sugar moiety preferably has a 4'-2' bridge, and the 4'-2' bridge is preferably cEt or LNA; (ii) at least one non-bicyclic modified sugar moiety, preferably selected from 2'-deoxy, 2'-F, 2'-MOE and 2'-OMe sugar moieties; (iii) modified nucleosides, preferably including 5-methylcytosine (m5C); and (iv) at least one sugar surrogate, preferably selected from POM, PNA, THP and F-HNA.
在一些实施方式中,所述反义寡核苷酸包括间隙聚体。在一些实施方式中,所述间隙聚体包括:(a)5'区,其由1-6个连接的5'区核苷酸组成;(b)中央区,其由6-10个连接的中央区核苷酸组成;和(c)3'区,其由1-6个连接的3'区核苷酸组成;其中所述5'区和所述3'区的核苷酸中的每一个都包含选自2'-MOE、LNA和cEt修饰的糖部分,并且所述中央区的核苷酸中的至少6个包含2'-脱氧糖部分。In some embodiments, the antisense oligonucleotide comprises a gapmer. In some embodiments, the gapmer comprises: (a) a 5' region consisting of 1-6 connected 5' region nucleotides; (b) a central region consisting of 6-10 connected central region nucleotides; and (c) a 3' region consisting of 1-6 connected 3' region nucleotides; wherein each of the nucleotides in the 5' region and the 3' region comprises a sugar moiety selected from 2'-MOE, LNA and cEt modifications, and at least 6 of the nucleotides in the central region comprise a 2'-deoxy sugar moiety.
在一些实施方式中,所述反义寡核苷酸具有选自以下的糖基序(5'至3'):eekddddddddddkke、ekkddddddddddkke、kkkdyddddddddkkk、kkkddydddddddkkk、kkkdddyddddddkkk、kkkddddddddddkkk或eeeeeddddddddddeeeee;其中e表示2'-MOE糖部分,k表示cEt糖部分,d表示2'-脱氧糖部分,并且y表示2'-OMe糖部分。In some embodiments, the antisense oligonucleotide has a sugar motif (5' to 3') selected from the following: eekddddddddddkke, ekkddddddddddkke, kkkdyddddddddkkk, kkkddydddddddkkk, kkkdddyddddddkkk, kkkddddddddddddkkk or eeeeeddddddddddeeeee; wherein e represents a 2'-MOE sugar moiety, k represents a cEt sugar moiety, d represents a 2'-deoxy sugar moiety, and y represents a 2'-OMe sugar moiety.
在一些实施方式中,所述反义寡核苷酸包含至少一个经修饰的核苷酸间连接;优选地,所述反义寡核苷酸的每个核苷酸间连接都是经修饰的核苷酸间连接;优选地,所述经修饰的核苷酸间连接优选选自硫代磷酸酯(PS)和氨基磷酸酯(PN)(例如甲磺酰基氨基磷酸酯(MsPA)),优选为PS。In some embodiments, the antisense oligonucleotide comprises at least one modified internucleotide linkage; preferably, each internucleotide linkage of the antisense oligonucleotide is a modified internucleotide linkage; preferably, the modified internucleotide linkage is preferably selected from phosphorothioate (PS) and phosphoramidate (PN) (e.g., methylsulfonyl phosphoramidate (MsPA)), preferably PS.
在一些实施方式中,所述反义寡核苷酸包含由12-30个、14-22个、14-20个、14-18个、14-20个、15-17个、15-25个或16-20个连接的核苷酸组成的寡核苷酸,优选地,所述寡核苷酸由20个相连的核苷酸组成;优选地,所述反义寡核苷酸包含如SEQ ID NO.18至32任一个所示的核苷酸序列或与它们具有1至3个核苷酸差异的核苷酸序列,由其任一个组成。In some embodiments, the antisense oligonucleotide comprises an oligonucleotide consisting of 12-30, 14-22, 14-20, 14-18, 14-20, 15-17, 15-25 or 16-20 linked nucleotides, preferably, the oligonucleotide consists of 20 linked nucleotides; preferably, the antisense oligonucleotide comprises a nucleotide sequence as shown in any one of SEQ ID NO.18 to 32 or a nucleotide sequence having 1 to 3 nucleotide differences therefrom, and consists of any one of them.
在一些实施方式中,所述反义寡核苷酸包含配体;优选地,其中所述配体包括靶向肝细胞的配体,优选地,所述配体包括半乳糖部分、半乳糖胺部分或N-乙酰基半乳糖胺部分,进一步优选地,所述配体是三价或四价N-乙酰基半乳糖胺部分,还进一步优选地,所述靶向肝细胞的配体是L96、NAG25或NAG37;或者所述配体包括靶向非肝细胞的配体或整合素配体、转铁蛋白受体1配体,优选地所述配体为亲脂基团,所述亲脂基团优选选自:脂质、维生素、类固醇、C5-C30饱和或不饱和脂肪酸、C5-C30烷基、以及包含至少一个带正电的氨基酸残基的多肽;所述亲脂基团更优选地选自胆固醇、C16饱和或不饱和脂肪酸、C16烷基、C22饱和或不饱和脂肪酸或C22烷基。In some embodiments, the antisense oligonucleotide comprises a ligand; preferably, wherein the ligand comprises a ligand targeting hepatocytes, preferably, the ligand comprises a galactose portion, a galactosamine portion or an N-acetylgalactosamine portion, further preferably, the ligand is a trivalent or tetravalent N-acetylgalactosamine portion, and further preferably, the ligand targeting hepatocytes is L96, NAG25 or NAG37; or the ligand comprises a ligand targeting non-hepatocytes or an integrin ligand, a transferrin receptor 1 ligand, preferably, the ligand is a lipophilic group, and the lipophilic group is preferably selected from: lipids, vitamins, steroids, C5 - C30 saturated or unsaturated fatty acids, C5 - C30 alkyls, and polypeptides comprising at least one positively charged amino acid residue; the lipophilic group is more preferably selected from cholesterol, C16 saturated or unsaturated fatty acids, C16 alkyls, C22 saturated or unsaturated fatty acids or C22 alkyls.
本发明的另一个方面提供一种用于抑制细胞中激活素IIB型受体(ACVR2B)基因表达的RNAi剂,包含形成双链区的正义链和反义链,其中所述反义链包含至少15个、至少16个、至少17个、至少18个、至少19个、至少20个或至少21个与编码ACVR2B的mRNA的靶区域的相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补或与其相差不超过3个核苷酸的核苷酸。Another aspect of the present invention provides a RNAi agent for inhibiting the expression of the activin type IIB receptor (ACVR2B) gene in a cell, comprising a sense strand and an antisense strand forming a double-stranded region, wherein the antisense strand comprises at least 15, at least 16, at least 17, at least 18, at least 19, at least 20 or at least 21 consecutive nucleotides of equal length to a target region of an mRNA encoding ACVR2B that are at least 80%, 85%, 90%, 95% or 100% complementary or differ from it by no more than 3 nucleotides.
在一些实施方式中,所述靶区域为SEQ ID NO:1所示的核苷酸序列的508-534、634-660、655-695、733-774、756-782、929-955、1049-1089、1141-1180、1189-1215、1243-1269、1276-1321、1377-1403、1547-1596、1642-1690、1744-1773、1916-1942或1949-1975。In some embodiments, the target region is 508-534, 634-660, 655-695, 733-774, 756-782, 929-955, 1049-1089, 1141-1180, 1189-1215, 1243-1269, 1276-1321, 1377-1403, 1547-1596, 1642-1690, 1744-1773, 1916-1942 or 1949-1975 of the nucleotide sequence shown in SEQ ID NO:1.
在一些实施方式中,所述靶区域为SEQ ID NO:1所示的核苷酸序列的508-534、634-660、655-681、658-684、669-695、733-759、748-774、756-782、929-955、1049-1075、1052-1078、1063-1089、1141-1167、1154-1180、1189-1215、1243-1269、1276-1302、1280-1306、1283-1309、1291-1317、1295-1321、1377-1403、1547-1573、1552-1578、1570-1596、1642-1668、1664-1690、1744-1770、1747-1773、1916-1942或1949-1975。在一些实施方式中,所述靶区域为SEQ ID NO:1所示的核苷酸序列的511-531、637-657、658-678、661-681、672-692、736-756、751-771、759-779、932-952、1052-1072、1055-1075、1066-1086、1144-1164、1157-1177、1192-1212、1246-1266、1279-1299、1283-1303、1286-1306、1294-1314、1298-1318、1380-1400、1550-1570、1555-1575、1573-1593、1645-1665、1667-1687、1747-1767、1750-1770、1919-1939或1952-1972。In some embodiments, the target region is 508-534, 634-660, 655-681, 658-684, 669-695, 733-759, 748-774, 756-782, 929-955, 1049-1075, 1052-1078, 1063-1089, 1141-1167, 1154-1180, 1189-1 215, 1243-1269, 1276-1302, 1280-1306, 1283-1309, 1291-1317, 1295-1321, 1377-1403, 1547-1573, 1552-1578, 1570-1596, 1642-1668, 1664-1690, 1744-1770, 1747-1773, 1916-1942 or 1949-1975. In some embodiments, the target region is 511-531, 637-657, 658-678, 661-681, 672-692, 736-756, 751-771, 759-779, 932-952, 1052-1072, 1055-1075, 1066-1086, 1144-1164, 1157-1177, 1192-1 212, 1246-1266, 1279-1299, 1283-1303, 1286-1306, 1294-1314, 1298-1318, 1380-1400, 1550-1570, 1555-1575, 1573-1593, 1645-1665, 1667-1687, 1747-1767, 1750-1770, 1919-1939 or 1952-1972.
在一些实施方式中,其中所述反义链包含选自SEQ ID NO:64至94以及与它们具有1至3个核苷酸差异的核苷酸序列的至少15个连续核苷酸。In some embodiments, the antisense strand comprises at least 15 consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1 to 3 nucleotide differences therefrom.
在一些实施方式中,所述双链区的长度为17至23个碱基对,优选18至21个碱基对,更优选为19个碱基对。In some embodiments, the length of the double-stranded region is 17 to 23 base pairs, preferably 18 to 21 base pairs, and more preferably 19 base pairs.
在一些实施方式中,所述正义链和所述反义链各自的长度为17至23个核苷酸,优选为19至21个核苷酸。In some embodiments, the sense strand and the antisense strand are each 17 to 23 nucleotides in length, preferably 19 to 21 nucleotides in length.
在一些实施方式中,所述RNAi剂包括一个或两个平末端,优选为一个平末端。In some embodiments, the RNAi agent comprises one or two blunt ends, preferably one blunt end.
在一些实施方式中,所述RNAi剂包括一个或两个突出端,优选为一个突出端,每个突出端具有1至4个未配对的核苷酸,优选具有2个未配对的核苷酸。In some embodiments, the RNAi agent comprises one or two overhangs, preferably one overhang, each overhang having 1 to 4 unpaired nucleotides, preferably 2 unpaired nucleotides.
在一些实施方式中,所述突出端位于正义链的3'末端、反义链的3'末端或同时位于正义链的3'末端和反义链的3'末端;优选地,所述突出端位于反义链的3'末端,并且进一步优选地,所述RNAi剂具有一个平末端。In some embodiments, the overhang is located at the 3' end of the sense strand, the 3' end of the antisense strand, or at both the 3' end of the sense strand and the 3' end of the antisense strand; preferably, the overhang is located at the 3' end of the antisense strand, and further preferably, the RNAi agent has a blunt end.
在一些实施方式中,所述正义链包含选自SEQ ID NO:33至63的任一核苷酸序列以及与它们具有1至3个核苷酸差异的核苷酸序列的至少15个连续核苷酸。In some embodiments, the positive strand comprises at least 15 consecutive nucleotides selected from any one nucleotide sequence of SEQ ID NO: 33 to 63 and a nucleotide sequence having 1 to 3 nucleotide differences therefrom.
在一些实施方式中,所述反义链具有不超过23个核苷酸并且包含选自SEQ ID NO:64至94的核苷酸序列;所述正义链具有不超过21个核苷酸并且包含SEQ ID NO:33至63的核苷酸序列。In some embodiments, the antisense strand has no more than 23 nucleotides and comprises a nucleotide sequence selected from SEQ ID NO: 64 to 94; the sense strand has no more than 21 nucleotides and comprises a nucleotide sequence selected from SEQ ID NO: 33 to 63.
在一些实施方式中,在所述RNAi剂中:In some embodiments, in the RNAi agent:
正义链包含或为SEQ ID NO:33所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:64所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:33, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:64, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:34所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:65所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:34, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:65, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:35所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:66所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:35, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:66, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:36所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:67所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:36, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:67, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:37所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:68所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:37, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:68, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:38所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:69所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:38, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:69, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:39所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:70所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:39, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:70, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:40所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:71所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:40, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:71, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:41所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:72所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:41, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:72, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:42所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:73所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:42, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:73, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:43所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:74所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:43, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:74, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:44所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:75所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:44, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:75, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:45所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:76所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:45, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:76, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:46所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:77所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:46, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:77, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:47所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:78所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:47, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:78, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:48所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:79所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:48, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:79, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:49所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:80所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:49, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:80, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:50所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:81所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:50, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:81, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:51所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:82所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:51, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:82, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:52所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:83所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:52, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:83, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:53所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:84所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:53, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:84, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:54所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:85所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:54, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:85, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:55所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:86所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:55, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:86, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:56所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:87所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:56, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:87, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:57所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:88所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:57, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:88, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:58所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:89所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:58, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:89, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:59所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:90所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:59, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:90, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:60所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:91所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:60, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:91, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:61所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:92所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:61, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:92, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:62所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:93所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;或The sense strand comprises or is the sequence shown in SEQ ID NO:62, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:93, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom; or
正义链包含或为SEQ ID NO:63所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:94所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列。The positive strand contains or is the sequence shown in SEQ ID NO:63 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand contains or is the sequence shown in SEQ ID NO:94 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom.
在一些实施方式中,所述RNAi剂包含双链体6102、6103、6104、6105、6106、6107、6108、6109、6112、6113、6115、6116、6117、6119、6120、6121、6122、6123、6124、6125、6127、6128、6129、6130、6131、6132、6134、6135、6137、6138或6140。。In some embodiments, the RNAi agent comprises duplex 6102, 6103, 6104, 6105, 6106, 6107, 6108, 6109, 6112, 6113, 6115, 6116, 6117, 6119, 6120, 6121, 6122, 6123, 6124, 6125, 6127, 6128, 6129, 6130, 6131, 6132, 6134, 6135, 6137, 6138, or 6140.
在一些实施方式中,所述RNAi剂的正义链和/或反义链包含至少一个经修饰的核苷酸,所述经修饰的核苷酸独立地选自2'-脱氧-胸腺嘧啶(dT)核苷酸、2'-O-甲基修饰的核苷酸(2'-OMe)、2'-氟修饰的核苷酸(2'-F)、2'-脱氧修饰的核苷酸、锁核酸(LNA)、开环核酸(UNA)、桥核酸(BNA)、乙二醇核酸(GNA)、阿苏糖核酸(TNA)、构型限制性核苷酸、限制性乙基核苷酸(cEt)、2'-氨基-修饰的核苷酸、2'-O-烯丙基-修饰的核苷酸、2'-C-烷基-修饰的核苷酸、2'-O-甲氧基乙基修饰的核苷酸(2'-MOE)、无碱基核苷酸、倒转的无碱基核苷酸、倒转的核苷酸、吗啉基核苷酸(MOP)、氨基磷酸酯(PN)、四氢吡喃修饰的核苷酸(THP)、1,5-脱水己糖醇修饰(HNA)的核苷酸、环己烯基修饰的核苷酸、包含硫代磷酸酯基的核苷酸(PS)、包含甲基膦酸酯基的核苷酸、包含5'-磷酸酯的核苷酸、包含5'-磷酸酯模拟物的核苷酸、阳离子脂质共价连接的核苷酸、包含5'-乙烯基膦酸酯的核苷酸(5'-VP)及其组合;优选地选自2'-O-甲基修饰的核苷酸、2'-氟修饰的核苷酸、包含硫代磷酸酯键核苷酸间连接的核苷酸及其组合;和/或优选地,所述RNAi剂的正义链和/或反义链的每个核苷酸都被修饰。In some embodiments, the sense strand and/or antisense strand of the RNAi agent comprises at least one modified nucleotide, the modified nucleotide being independently selected from 2'-deoxy-thymine (dT) nucleotides, 2'-O-methyl modified nucleotides (2'-OMe), 2'-fluorine modified nucleotides (2'-F), 2'-deoxy modified nucleotides, locked nucleic acids (LNA), open ring nucleic acids (UNA), bridge nucleic acids (BNA), glycol nucleic acids (GNA), athreose nucleic acids (TNA), conformationally restricted nucleotides, restricted ethyl nucleotides (cEt), 2'-amino-modified nucleotides, 2'-O-allyl-modified nucleotides, 2'-C-alkyl-modified nucleotides, 2'-O-methoxyethyl modified nucleotides (2'-MOE), abasic nucleotides, inverted The invention relates to a baseless nucleotide, an inverted nucleotide, a morpholino nucleotide (MOP), an aminophosphorate (PN), a tetrahydropyran-modified nucleotide (THP), a 1,5-anhydrohexitol-modified (HNA) nucleotide, a cyclohexenyl-modified nucleotide, a thiophosphate-containing nucleotide (PS), a methylphosphonate-containing nucleotide, a 5'-phosphate-containing nucleotide, a 5'-phosphate-containing nucleotide, a 5'-phosphate mimetic-containing nucleotide, a cationic lipid-covalently linked nucleotide, a 5'-vinylphosphonate-containing nucleotide (5'-VP) and a combination thereof; preferably selected from 2'-O-methyl-modified nucleotides, 2'-fluorine-modified nucleotides, nucleotides containing thiophosphate-bonded nucleotides and a combination thereof; and/or preferably, each nucleotide of the sense strand and/or antisense strand of the RNAi agent is modified.
在一些实施方式中,在所述的RNAi剂中,按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。In some embodiments, in the RNAi agent, in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides.
在一些实施方式中,在所述的RNAi剂中,其中所述反义链具有至少一个硫代磷酸酯键核苷酸间连接;优选地,所述硫代磷酸酯键核苷酸间连接存在于以下中的一个或多个:(i)所述反义链的5'端第1个核苷酸和第2个核苷酸之间;(ii)所述反义链的5'端第2个核苷酸和第3个核苷酸之间;(iii)所述反义链的3'端第1个核苷酸和第2个核苷酸之间;以及(iv)所述反义链的3'端第2个核苷酸和第3个核苷酸之间。In some embodiments, in the RNAi agent, the antisense strand has at least one phosphorothioate internucleotide linkage; preferably, the phosphorothioate internucleotide linkage exists in one or more of the following: (i) between the first nucleotide and the second nucleotide at the 5' end of the antisense strand; (ii) between the second nucleotide and the third nucleotide at the 5' end of the antisense strand; (iii) between the first nucleotide and the second nucleotide at the 3' end of the antisense strand; and (iv) between the second nucleotide and the third nucleotide at the 3' end of the antisense strand.
在一些实施方式中,在所述的RNAi剂中,按5'端至3'端方向,所述正义链的第7和9位的核苷酸为2'-氟代修饰的核苷酸,所述正义链的第5、8和11位的核苷酸中的一个或两个为2'-氟代修饰的核苷酸,所述正义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。In some embodiments, in the RNAi agent, from the 5' end to the 3' end, the nucleotides at positions 7 and 9 of the sense chain are 2'-fluoro-modified nucleotides, one or two of the nucleotides at positions 5, 8 and 11 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
在一些实施方式中,所述正义链具有至少一个硫代磷酸酯键核苷酸间连接;优选地,所述硫代磷酸酯键核苷酸间连接存在于以下位置中的一个或多个:(i)所述正义链的5'端第1个核苷酸和第2个核苷酸之间;(ii)所述正义链的5'端第2个核苷酸和第3个核苷酸之间;(iii)所述正义链的3'端第1个核苷酸和第2个核苷酸之间;以及(iv)所述正义链的3'端第2个核苷酸和第3个核苷酸之间。In some embodiments, the sense strand has at least one phosphorothioate internucleotide linkage; preferably, the phosphorothioate internucleotide linkage is present at one or more of the following positions: (i) between the first nucleotide and the second nucleotide at the 5' end of the sense strand; (ii) between the second nucleotide and the third nucleotide at the 5' end of the sense strand; (iii) between the first nucleotide and the second nucleotide at the 3' end of the sense strand; and (iv) between the second nucleotide and the third nucleotide at the 3' end of the sense strand.
在一些实施方式中,所述修饰选自STC、ESC、Advanced ESC、ESC+、AD1-3、AD5和GalXC中的一个。In some embodiments, the modification is selected from one of STC, ESC, Advanced ESC, ESC+, AD1-3, AD5 and GalXC.
在一些实施方式中,所述修饰为反义链5'-末端核苷酸含有磷酸或磷酸类似物修饰,优选为5'-VP。In some embodiments, the modification is that the 5'-terminal nucleotide of the antisense strand contains a phosphate or phosphate analog modification, preferably 5'-VP.
在一些实施方式中,所述RNAi剂进一步包括靶向肝细胞的配体,优选地,所述配体包括半乳糖部分、半乳糖胺部分或N-乙酰基半乳糖胺部分,进一步优选地,所述配体是三价或四价N-乙酰基半乳糖胺部分,还进一步优选地,所述靶向肝细胞的配体是L96、NAG25或NAG37;或者所述RNAi剂进一步包括靶向非肝细胞的配体,优选地所述配体为亲脂基团或整合素配体、转铁蛋白受体1配体,所述亲脂基团优选选自:脂质、维生素、类固醇、C5-C30饱和或不饱和脂肪酸、C5-C30烷基、以及包含至少一个带正电的氨基酸残基的多肽;所述亲脂基团更优选地选自胆固醇、C16饱和或不饱和脂肪酸、C16烷基、C22饱和或不饱和脂肪酸或C22烷基。In some embodiments, the RNAi agent further comprises a ligand targeting hepatocytes, preferably, the ligand comprises a galactose moiety, a galactosamine moiety or an N-acetylgalactosamine moiety, further preferably, the ligand is a trivalent or tetravalent N-acetylgalactosamine moiety, and still further preferably, the ligand targeting hepatocytes is L96, NAG25 or NAG37; or the RNAi agent further comprises a ligand targeting non-hepatocytes, preferably, the ligand is a lipophilic group or an integrin ligand, a transferrin receptor 1 ligand, and the lipophilic group is preferably selected from: lipids, vitamins, steroids, C5 - C30 saturated or unsaturated fatty acids, C5 - C30 alkyls, and polypeptides comprising at least one positively charged amino acid residue; the lipophilic group is more preferably selected from cholesterol, C16 saturated or unsaturated fatty acids, C16 alkyls, C22 saturated or unsaturated fatty acids or C22 alkyls.
本发明的另一个方面提供一种药物组合物,其包含本发明的任一种反义寡核苷酸或任一种RNAi剂以及药学上可接受的载体;优选地,所述药物组合物被配制成静脉或皮下注射剂。Another aspect of the present invention provides a pharmaceutical composition comprising any antisense oligonucleotide or any RNAi agent of the present invention and a pharmaceutically acceptable carrier; preferably, the pharmaceutical composition is formulated as an intravenous or subcutaneous injection.
本发明的还一个方面提供本发明的任一种RNAi剂在制备以下药物中的应用:Another aspect of the present invention provides the use of any RNAi agent of the present invention in the preparation of the following drugs:
(i)用于降低细胞中ACVR2B表达水平的药物;(i) a drug for reducing the expression level of ACVR2B in cells;
(ii)用于预防或治疗由ACVR2B表达水平异常介导的疾病的药物;或(ii) a drug for preventing or treating a disease mediated by abnormal expression levels of ACVR2B; or
(iii)用于预防或治疗选自肌肉萎缩、肌肉营养不良、肥胖、糖尿病、慢性肾脏疾病、急性肾损伤、外伤术后愈合、颌面部肿瘤、妊娠子痫、肝纤维化、动脉粥样硬化、缺血性脑卒中和阿尔茨海默病的疾病的药物。(iii) a drug for preventing or treating a disease selected from the group consisting of muscular atrophy, muscular dystrophy, obesity, diabetes, chronic kidney disease, acute kidney injury, postoperative healing of trauma, maxillofacial tumors, eclampsia during pregnancy, liver fibrosis, atherosclerosis, ischemic stroke and Alzheimer's disease.
本发明的再一个方面提供降低编码激活素IIB型受体(ACVR2B)基因表达的试剂在制备用于治疗ACVR2B敲低可治疗的疾病或病症的药物中的用途。优选地,所述试剂为反义寡核苷酸和/或RNAi剂。优选地,所述疾病或病症选自肌肉萎缩、肌肉营养不良、肥胖、糖尿病、慢性肾脏疾病、急性肾损伤、外伤术后愈合、颌面部肿瘤、妊娠子痫、肝纤维化、动脉粥样硬化、缺血性脑卒中和阿尔茨海默病。Another aspect of the present invention provides the use of an agent that reduces the expression of a gene encoding activin type IIB receptor (ACVR2B) in the preparation of a medicament for treating a disease or condition treatable by ACVR2B knockdown. Preferably, the agent is an antisense oligonucleotide and/or an RNAi agent. Preferably, the disease or condition is selected from the group consisting of muscular atrophy, muscular dystrophy, obesity, diabetes, chronic kidney disease, acute kidney injury, postoperative healing of trauma, maxillofacial tumors, pregnancy eclampsia, liver fibrosis, atherosclerosis, ischemic stroke and Alzheimer's disease.
相应地,本发明还提供一种降低细胞中ACVR2B表达水平的方法,所述方法包括向有需要的对象施用治疗有效量的本发明的任一种反义寡核苷酸或任一种RNAi剂。本发明还提供一种预防或治疗由ACVR2B表达水平异常介导(例如水平升高引起)的疾病的方法,所述方法包括向有需要的对象施用治疗有效量的本发明的任一种反义寡核苷酸或任一种RNAi剂。本发明还提供一种预防或治疗选自肌肉萎缩、肌肉营养不良、肥胖、糖尿病、慢性肾脏疾病、急性肾损伤、外伤术后愈合、颌面部肿瘤、妊娠子痫、肝纤维化、动脉粥样硬化、缺血性脑卒中和阿尔茨海默病的疾病的方法,所述方法包括向有需要的对象施用治疗有效量的本发明的任一种反义寡核苷酸或任一种RNAi剂。本发明还提供本发明的任一种反义寡核苷酸或任一种RNAi剂在制备用于预防或治疗上述疾病的药物中的应用。本发明还提供用于预防或治疗上述疾病的本发明的任一种反义寡核苷酸或任一种RNAi剂。Accordingly, the present invention also provides a method for reducing the expression level of ACVR2B in a cell, the method comprising administering a therapeutically effective amount of any antisense oligonucleotide or any RNAi agent of the present invention to a subject in need. The present invention also provides a method for preventing or treating a disease mediated by abnormal expression levels of ACVR2B (e.g., caused by increased levels), the method comprising administering a therapeutically effective amount of any antisense oligonucleotide or any RNAi agent of the present invention to a subject in need. The present invention also provides a method for preventing or treating a disease selected from muscular atrophy, muscular dystrophy, obesity, diabetes, chronic kidney disease, acute kidney injury, postoperative healing of trauma, maxillofacial tumors, eclampsia in pregnancy, liver fibrosis, atherosclerosis, ischemic stroke and Alzheimer's disease, the method comprising administering a therapeutically effective amount of any antisense oligonucleotide or any RNAi agent of the present invention to a subject in need. The present invention also provides the use of any antisense oligonucleotide or any RNAi agent of the present invention in the preparation of a drug for preventing or treating the above-mentioned disease. The present invention also provides any antisense oligonucleotide or any RNAi agent of the present invention for preventing or treating the above-mentioned disease.
本发明的其他方面将从以下说明书的详细描述中看出。Other aspects of the present invention will become apparent from the detailed description of the following specification.
定义definition
激活素IIB型受体(Activin A Receptor Type 2B,ACVR2B),在本文中是指激活素IIB型受体蛋白或其编码基因,也称HTX4、ACTRIIB或ActR-IIB,Gene ID:93。人全长ACVR2B mRNA转录物的NCBI登录号为NM_001106.4。食蟹猴ACVR2B mRNA转录物的NCBI登录号为XM_015445674.2。Activin A Receptor Type 2B (ACVR2B), in this article, refers to the activin A receptor type 2B protein or its encoding gene, also known as HTX4, ACTRIIB or ActR-IIB, Gene ID: 93. The NCBI accession number of the human full-length ACVR2B mRNA transcript is NM_001106.4. The NCBI accession number of the cynomolgus monkey ACVR2B mRNA transcript is XM_015445674.2.
如本文所用,“寡核苷酸”是指经由核苷酸间连接而形成核苷酸链的一段核苷酸序列,其中每个核苷和核苷酸间连接可经修饰或未经修饰。除非另有指示,否则寡核苷酸由12-30个连接的核苷酸组成。如本文所用,“反义寡核苷酸”或“ASO”是指能够与靶RNA(如mRNA)序列特异性结合并调节蛋白(如ACVR2B)表达的单链寡核苷酸。如本文所述,“反义寡核苷酸”可包含非寡核苷酸部分,例如配体。As used herein, "oligonucleotide" refers to a nucleotide sequence that forms a nucleotide chain via internucleotide linkages, wherein each nucleoside and internucleotide linkage may be modified or unmodified. Unless otherwise indicated, an oligonucleotide consists of 12-30 linked nucleotides. As used herein, "antisense oligonucleotide" or "ASO" refers to a single-stranded oligonucleotide that is capable of specifically binding to a target RNA (such as mRNA) sequence and modulating protein (such as ACVR2B) expression. As described herein, "antisense oligonucleotide" may include non-oligonucleotide portions, such as ligands.
“核苷酸间连接”意指寡核苷酸中邻接核苷酸之间的共价键联。如本文所用,“经修饰的核苷酸间连接”意指除磷酸二酯核苷酸间连接以外的任何核苷酸间连接。“硫代磷酸酯核苷酸间连接”是经修饰的核苷酸间连接,其中磷酸二酯核苷酸间连接的一个非桥接氧原子被硫原子代替。"Internucleotide linkage" means a covalent linkage between adjacent nucleotides in an oligonucleotide. As used herein, "modified internucleotide linkage" means any internucleotide linkage other than a phosphodiester internucleotide linkage. A "phosphorothioate internucleotide linkage" is a modified internucleotide linkage in which one of the non-bridging oxygen atoms of the phosphodiester internucleotide linkage is replaced by a sulfur atom.
“脱氧区”意指5-12个邻接核苷酸的区域,其中至少70%的核苷是2'-β-D-脱氧核苷。在某些实施方案中,每个核苷选自2'-β-D-脱氧核苷、双环核苷和2'-取代的核苷。在某些实施方案中,脱氧区支持RNase H活性。在某些实施方案中,脱氧区是间隙聚体的间隙或内部区域。"Deoxy region" means a region of 5-12 contiguous nucleotides in which at least 70% of the nucleosides are 2'-β-D-deoxynucleosides. In certain embodiments, each nucleoside is selected from 2'-β-D-deoxynucleosides, bicyclic nucleosides, and 2'-substituted nucleosides. In certain embodiments, the deoxy region supports RNase H activity. In certain embodiments, the deoxy region is a gap or internal region of a gapmer.
“间隙聚体”意指包含内部区域的反义寡核苷酸,所述内部区域位于具有一个或多个核苷的外部区域之间,具有多个支持RNase H裂解的核苷,其中构成内部区域的核苷在化学上不同于构成外部区域的一个或多个核苷。内部区域可称为“间隙”,并且外部区域可称为“翼”。内部区域是脱氧区。内部区域或间隙的位置是指内部区域的核苷的顺序并且从内部区域的5'端开始计数。除非另有指示,否则“间隙聚体”是指糖基序。在某些实施方案中,间隙的每个核苷是2'-β-D-脱氧核苷。在某些实施方案中,间隙包含在间隙的1位、2位、3位、4位或5位处的一个2'-取代的核苷,并且间隙的其余核苷是2'-β-D-脱氧核苷。如本文所用,术语“MOE间隙聚体”指示具有包含2'-β-D-脱氧核苷的间隙和包含2'-MOE核苷的翼的间隙聚体。如本文所用,术语“混合翼间隙聚体”是指具有翼的间隙聚体,所述翼包含含有至少两种不同的糖修饰的经修饰的核苷。除非另有指示,否则间隙聚体可包含一个或多个经修饰的核苷酸间连接和/或经修饰的核碱基,并且此类修饰不一定遵循糖修饰的间隙聚体模式。"Gapmer" means an antisense oligonucleotide comprising an internal region, the internal region being located between an external region having one or more nucleosides, having a plurality of nucleosides that support RNase H cleavage, wherein the nucleosides constituting the internal region are chemically different from the one or more nucleosides constituting the external region. The internal region may be referred to as a "gap" and the external region may be referred to as a "wing". The internal region is a deoxy region. The position of the internal region or gap refers to the order of the nucleosides of the internal region and is counted from the 5' end of the internal region. Unless otherwise indicated, "gapmer" refers to a sugar motif. In certain embodiments, each nucleoside of the gap is a 2'-β-D-deoxynucleoside. In certain embodiments, the gap comprises a 2'-substituted nucleoside at position 1, 2, 3, 4, or 5 of the gap, and the remaining nucleosides of the gap are 2'-β-D-deoxynucleosides. As used herein, the term "MOE gapmer" indicates a gapmer having a gap comprising 2'-β-D-deoxynucleosides and a wing comprising 2'-MOE nucleosides. As used herein, the term "mixed-wing gapmer" refers to a gapmer having a wing comprising modified nucleosides containing at least two different sugar modifications. Unless otherwise indicated, a gapmer may comprise one or more modified internucleotide linkages and/or modified nucleobases, and such modifications do not necessarily follow the sugar-modified gapmer pattern.
如本文所用,术语“RNAi剂”是指包含在引入细胞时能够通过RNA干扰机制下调靶基因(在本文中为ACVR2B基因)的表达的RNA分子的试剂。术语“本发明的RNAi剂”、“本文所述的RNAi剂”或类似表述既包括本发明的经修饰的RNAi剂,无论序列和靶基因,也包括本发明的用于干扰ACVR2B基因的具有具体序列的RNAi剂。RNA干扰是指核酸分子以序列特异性的方式,例如通过RNA诱导的沉默复合物(RISC)途径,诱导靶RNA分子(如mRNA分子)的切割和降解的过程。RNAi剂在本文包含siRNA、shRNA以及DNA/RNA杂合分子,在本文有时也统称为双链RNA(dsRNA),其包含彼此充分互补以杂交形成双链区的两条反平行的连续核苷酸链。“杂交”是指互补多核苷酸的配对,通常通过两种多核苷酸中互补碱基之间的氢键(例如Watson-Crick氢键、Wobble氢键、Hoogsteen氢键或反向Hoogsteen氢键)。“双链区”是指两种互补或基本互补的多核苷酸中的区域,它们通过杂交形成碱基对,从而在两条多核苷酸链之间形成双链。As used herein, the term "RNAi agent" refers to an agent comprising an RNA molecule that can downregulate the expression of a target gene (ACVR2B gene in this article) through an RNA interference mechanism when introduced into a cell. The term "RNAi agent of the present invention", "RNAi agent described herein" or similar expressions include both modified RNAi agents of the present invention, regardless of sequence and target gene, and RNAi agents with specific sequences for interfering with the ACVR2B gene of the present invention. RNA interference refers to a process in which nucleic acid molecules induce the cutting and degradation of target RNA molecules (such as mRNA molecules) in a sequence-specific manner, such as through an RNA-induced silencing complex (RISC) pathway. RNAi agents herein include siRNA, shRNA, and DNA/RNA hybrid molecules, sometimes collectively referred to herein as double-stranded RNA (dsRNA), which include two antiparallel continuous nucleotide chains that are fully complementary to each other to hybridize to form a double-stranded region. "Hybridization" refers to the pairing of complementary polynucleotides, usually through hydrogen bonds (e.g., Watson-Crick hydrogen bonds, Wobble hydrogen bonds, Hoogsteen hydrogen bonds, or reverse Hoogsteen hydrogen bonds) between complementary bases in two polynucleotides. The "double-stranded region" refers to a region in two complementary or substantially complementary polynucleotides that form base pairs by hybridization, thereby forming a double strand between the two polynucleotide chains.
术语“反义链”是指dsRNA中包含与靶序列基本互补的区域的链。术语“正义链”或“正义链”是指dsRNA中包含与本文定义的反义链区域基本互补的区域的链。术语“基本互补的区域”是指完全互补或不完全互补的区域。当互补的区域与靶序列不完全互补时,错配可能位于分子的内部或末端区域。通常,最可容忍的错配位于末端区域,例如在dsRNA的5'和/或3'末端的5、4、3或2个。The term "antisense strand" refers to a strand in a dsRNA that includes a region that is substantially complementary to a target sequence. The term "sense strand" or "sense strand" refers to a strand in a dsRNA that includes a region that is substantially complementary to an antisense strand region as defined herein. The term "substantially complementary region" refers to a region that is fully complementary or incompletely complementary. When the complementary region is not fully complementary to the target sequence, the mismatch may be located in the interior or terminal regions of the molecule. Typically, the most tolerable mismatch is located in the terminal regions, such as 5, 4, 3 or 2 at the 5' and/or 3' ends of the dsRNA.
“siRNA”指形成双链RNA的核酸,当siRNA与靶基因在同一细胞中存在时该双链RNA具有降低或抑制靶基因表达的能力。siRNA通常为约15至约30个碱基对长度,最通常为约19至25个碱基对长度,例如19、20、21、22、23、24或25个核苷酸对长度。"siRNA" refers to a nucleic acid that forms double-stranded RNA that has the ability to reduce or inhibit the expression of a target gene when the siRNA and the target gene are present in the same cell. The siRNA is typically about 15 to about 30 base pairs in length, most typically about 19 to 25 base pairs in length, such as 19, 20, 21, 22, 23, 24 or 25 nucleotide pairs in length.
shRNA指短发夹RNA,其包括两个短反向重复序列和连接两者的中间茎环结构。茎环可包含至少一个未配对的核苷酸,例如,可包含至少2个、至少3个、至少4个、至少5个、至少6个、至少7个、至少8个、至少9个、至少10个、至少20个、至少23个或更多未配对的核苷酸。茎环可以是10个或更少的核苷酸。茎环可以是8个或更少的未配对核苷酸。茎环可以是4至10个未配对的核苷酸。茎环可为4至8个核苷酸。shRNA refers to short hairpin RNA, which includes two short inverted repeat sequences and an intermediate stem-loop structure connecting the two. The stem-loop may contain at least one unpaired nucleotide, for example, at least 2, at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 20, at least 23 or more unpaired nucleotides. The stem-loop may be 10 or less nucleotides. The stem-loop may be 8 or less unpaired nucleotides. The stem-loop may be 4 to 10 unpaired nucleotides. The stem-loop may be 4 to 8 nucleotides.
dsRNA的两条基本上互补的链不需要但也可以共价连接。碱基对的最大数量是dsRNA最短链中的核苷酸数量减去双链体中存在的任何突出端。除了双链体结构之外,dsRNA还可以包含一个或多个核苷酸突出。突出的核苷酸是指在链末端延伸超过双链区的一个或多个未配对核苷酸。当一条链的3'端延伸超过另一条链5'端时,或者当一条线的5'端延伸超出另一条线3'端时通常会产生核苷酸突出。例如,至少一条链包含至少1个核苷酸的3'突出端,例如,1至4个核苷酸突出。又例如,至少一条链包含至少1个核苷酸的5'突出端,例如1至4个核苷酸突出。在其他实施例中,dsRNA的一条链的3'末端和5'末端均包含至少1个核苷酸的突出端。The two substantially complementary chains of dsRNA do not need to be but can also be covalently linked. The maximum number of base pairs is the number of nucleotides in the shortest chain of the dsRNA minus any overhangs present in the duplex. In addition to the duplex structure, the dsRNA can also include one or more nucleotide overhangs. Overhanging nucleotides refer to one or more unpaired nucleotides extending beyond the double-stranded region at the end of the chain. When the 3' end of a chain extends beyond the 5' end of another chain, or when the 5' end of a line extends beyond the 3' end of another line, nucleotide overhangs are usually generated. For example, at least one chain includes a 3' overhang of at least 1 nucleotide, for example, 1 to 4 nucleotides overhang. For another example, at least one chain includes a 5' overhang of at least 1 nucleotide, for example, 1 to 4 nucleotides overhang. In other embodiments, the 3' end and 5' end of a chain of the dsRNA both include an overhang of at least 1 nucleotide.
如本文所用,关于dsRNA的术语“平端”或“平末端”是指在dsRNA的给定末端没有未配对的核苷酸或核苷酸类似物,即没有核苷酸突出端。dsRNA的一端或两端可以是平的。如果dsRNA的两端都是平端,则称所述dsRNA是平端的。需要明确的是,“平端”dsRNA是两端都是平端的dsRNA,即分子的任一端都没有核苷酸突出端。大多数情况下,这样的分子在其整个长度上都是双链的。如本文所用,术语“核苷酸突出端”是指从dsRNA的双链体结构突出的至少一个未配对核苷酸。例如,当dsRNA一条链的3'末端延伸超出另一条链的5'末端时,反之亦然,则存在核苷酸突出端。核苷酸突出端可包含核苷酸/核苷类似物或由其组成,包括脱氧核苷酸/核苷。突出端可以在正义链、反义链或其任何组合上。此外,突出端的核苷酸可存在于dsRNA的反义链或正义链的5'末端、3'末端或两端。As used herein, the term "blunt end" or "blunt end" with respect to dsRNA refers to the absence of unpaired nucleotides or nucleotide analogs at a given end of the dsRNA, i.e., no nucleotide overhangs. One or both ends of the dsRNA may be flat. If both ends of the dsRNA are flat ends, the dsRNA is said to be flat-ended. It should be noted that a "blunt-ended" dsRNA is a dsRNA with both ends being flat, i.e., there is no nucleotide overhang at either end of the molecule. In most cases, such molecules are double-stranded over their entire length. As used herein, the term "nucleotide overhang" refers to at least one unpaired nucleotide protruding from the duplex structure of the dsRNA. For example, when the 3' end of one strand of the dsRNA extends beyond the 5' end of the other strand, or vice versa, there is a nucleotide overhang. The nucleotide overhang may comprise or consist of nucleotide/nucleoside analogs, including deoxynucleotides/nucleosides. The overhang may be on the sense strand, the antisense strand, or any combination thereof. Furthermore, the overhanging nucleotides may be present at the 5' end, the 3' end, or both ends of the antisense strand or the sense strand of the dsRNA.
dsRNA分子可包括对核糖核苷酸的化学修饰,包括对核糖核酸的核糖、碱基或骨架成分的修饰,如本文所述或本领域已知的修饰。任何此类修饰,如在双链核糖核酸分子(如siRNA、shRNA等)中使用,为了本公开的目的被术语“dsRNA”所涵盖。“修饰”的核苷酸是指独立地具有修饰的糖部分、经修饰的核苷酸间键合和/或经修饰的核碱基的核苷酸。因此,术语“经修饰的核苷酸”包括对核苷间键合、糖部分或核碱基的例如官能团或原子的取代、添加或去除。The dsRNA molecule may include chemical modifications to ribonucleotides, including modifications to the ribose, bases or backbone components of ribonucleic acid, as described herein or modifications known in the art. Any such modifications, such as used in double-stranded ribonucleic acid molecules (such as siRNA, shRNA, etc.), are encompassed by the term "dsRNA" for the purposes of this disclosure. "Modified" nucleotides refer to nucleotides independently having modified sugar moieties, modified internucleotide linkages and/or modified nucleobases. Therefore, the term "modified nucleotides" includes substitutions, additions or removals of, for example, functional groups or atoms of internucleoside linkages, sugar moieties or nucleobases.
术语“配体”是指与指定的细胞类型(如肝细胞)结合的细胞或组织靶向剂,例如凝集素、糖蛋白、脂质或蛋白质(例如抗体)。示例性的靶向剂包括促甲状腺激素、促黑激素、凝集素、糖蛋白、表面活性蛋白A、粘蛋白碳水化合物、多价乳糖、多价半乳糖、N-乙酰基半乳糖胺(GalNAc)、多价(如二价或三价)GalNAc、N-乙酰基葡糖胺、多价甘露糖、多价海藻糖、糖基化的聚氨基酸、多价半乳糖、转铁蛋白、双膦酸盐、聚谷氨酸盐、聚天冬氨酸盐、胆固醇、类固醇、胆汁酸、叶酸盐、维生素B12、生物素、RGD肽和RGD肽模拟物。在优选的实施例中,该配体是一种碳水化合物,例如单糖、二糖、三糖、四糖、多糖。例如,该配体可以是包含GalNAc的衍生物。在优选的实施例中,配体是包含通过二价或三价支链接头附接的一种或多种N-乙酰半乳糖胺衍生物。The term "ligand" refers to a cell or tissue targeting agent that binds to a specified cell type (such as a hepatocyte), such as a lectin, glycoprotein, lipid or protein (such as an antibody). Exemplary targeting agents include thyrotropin, melanocyte stimulating hormone, lectin, glycoprotein, surfactant protein A, mucin carbohydrates, multivalent lactose, multivalent galactose, N-acetylgalactosamine (GalNAc), multivalent (such as divalent or trivalent) GalNAc, N-acetylglucosamine, multivalent mannose, multivalent trehalose, glycosylated polyamino acids, multivalent galactose, transferrin, bisphosphonates, polyglutamate, polyaspartate, cholesterol, steroids, bile acid, folate, vitamin B12, biotin, RGD peptide and RGD peptide mimetic. In a preferred embodiment, the ligand is a carbohydrate, such as a monosaccharide, a disaccharide, a trisaccharide, a tetrasaccharide, a polysaccharide. For example, the ligand can be a derivative comprising GalNAc. In a preferred embodiment, the ligand is comprised of one or more N-acetylgalactosamine derivatives attached via a divalent or trivalent branched linker.
术语“治疗有效量”指一种本发明的RNAi剂或其组合物的在适用于任何医学治疗的合理效益/风险比下在动物中的细胞的至少一个亚群中有效产生某些所希望的治疗效果的量。The term "therapeutically effective amount" refers to an amount of a RNAi agent of the invention or composition thereof effective to produce some desired therapeutic effect in at least a subpopulation of cells in an animal at a reasonable benefit/risk ratio applicable to any medical treatment.
术语“药学上可接受的”指位于正确医学判断的范围内、适于与人类和动物的组织接触而无过量毒性、刺激、过敏反应或其他问题或并发症、与一个合理效益/风险比相称的那些化合物、材料、组合物和/或剂型。The term "pharmaceutically acceptable" refers to those compounds, materials, compositions and/or dosage forms which are within the scope of sound medical judgment and suitable for contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problems or complications, commensurate with a reasonable benefit/risk ratio.
术语“药学上可接受的载体”是指参与将ASO或RNAi剂从身体的一个器官或部位携载或运载到身体的另一个器官或部位的一种药学上可接受的材料、组合物或运载体,如一种液体或固体填充剂、稀释剂、赋形剂、制造助剂或溶剂包封材料。每种载体必须在与该组合物的其他成分相容并且对患者无害的意义上是“可接受的”。The term "pharmaceutically acceptable carrier" refers to a pharmaceutically acceptable material, composition or vehicle involved in carrying or delivering an ASO or RNAi agent from one organ or part of the body to another organ or part of the body, such as a liquid or solid filler, diluent, excipient, manufacturing aid or solvent encapsulating material. Each carrier must be "acceptable" in the sense of being compatible with the other ingredients of the composition and not injurious to the patient.
术语“治疗”涵盖预防、治疗以及治愈。接受这一治疗的患者通常是任何有需要的动物,包括灵长类动物(特别是人类)以及其他哺乳动物,如马、牛、猪、羊、家禽和宠物。The term "treatment" encompasses prevention, therapy, and cure. The patient receiving such treatment is generally any animal in need, including primates (particularly humans) and other mammals such as horses, cattle, pigs, sheep, poultry, and pets.
用于抑制ACVR2B基因表达的反义寡核苷酸Antisense oligonucleotides for inhibiting ACVR2B gene expression
本发明的第一个方面提供一种反义寡核苷酸,其包含由12至30个相连的核苷酸组成的寡核苷酸,所述寡核苷酸包含至少8个、至少9个、至少10个、至少11个、至少12个、至少13个、至少14个、至少15个、至少16个、至少17个、至少18个、至少19个或至少20个与编码激活素IIB型受体(ACVR2B)的mRNA的靶区域的相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补的核苷酸。The first aspect of the invention provides an antisense oligonucleotide comprising an oligonucleotide consisting of 12 to 30 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19 or at least 20 nucleotides that are at least 80%, 85%, 90%, 95% or 100% complementary to an equal length of consecutive nucleotides of a target region of an mRNA encoding an activin type IIB receptor (ACVR2B).
在一些实施方式中,其中所述靶区域为SEQ ID NO:1所示的核苷酸序列的504-554、588-617、648-686、837-866、1234-1268、1360-1403、1503-1532或1545-1574。在一些实施方式中,其中所述靶区域为SEQ ID NO:1所示的核苷酸序列的504-533、510-539、519-548、525-554、588-617、648-677、653-682、657-686、837-866、1234-1263、1239-1268、1360-1389、1374-1403、1503-1532或1545-1574。在优选的实施方式中,其中所述靶区域为SEQ ID NO:1所示的核苷酸序列的509-528、515-534、524-543、530-549、593-612、653-672、658-677、662-681、842-861、1239-1258、1244-1263、1365-1384、1379-1398、1508-1527或1550-1569。In some embodiments, the target region is 504-554, 588-617, 648-686, 837-866, 1234-1268, 1360-1403, 1503-1532 or 1545-1574 of the nucleotide sequence shown in SEQ ID NO: 1. In some embodiments, the target region is 504-533, 510-539, 519-548, 525-554, 588-617, 648-677, 653-682, 657-686, 837-866, 1234-1263, 1239-1268, 1360-1389, 1374-1403, 1503-1532 or 1545-1574 of the nucleotide sequence shown in SEQ ID NO: 1. In a preferred embodiment, the target region is 509-528, 515-534, 524-543, 530-549, 593-612, 653-672, 658-677, 662-681, 842-861, 1239-1258, 1244-1263, 1365-1384, 1379-1398, 1508-1527 or 1550-1569 of the nucleotide sequence shown in SEQ ID NO:1.
因此,在一些实施方式中,本发明提供一种反义寡核苷酸,其包含由12至30个相连的核苷酸组成的寡核苷酸,所述寡核苷酸包含至少8个、至少9个、至少10个、至少11个、至少12个、至少13个、至少14个、至少15个、至少16个、至少17个、至少18个、至少19个或至少20个与SEQ ID NO:1所示的核苷酸序列的504-554、588-617、648-686、837-866、1234-1268、1360-1403、1503-1532或1545-1574中相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补的核苷酸。Therefore, in some embodiments, the present invention provides an antisense oligonucleotide comprising an oligonucleotide consisting of 12 to 30 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19 or at least 20 nucleotides that are at least 80%, 85%, 90%, 95% or 100% complementary to consecutive nucleotides of equal length in 504-554, 588-617, 648-686, 837-866, 1234-1268, 1360-1403, 1503-1532 or 1545-1574 of the nucleotide sequence shown in SEQ ID NO:1.
在一些实施方式中,本发明提供一种反义寡核苷酸,其包含由12至30个相连的核苷酸组成的寡核苷酸,所述寡核苷酸包含至少8个、至少9个、至少10个、至少11个、至少12个、至少13个、至少14个、至少15个、至少16个、至少17个、至少18个、至少19个或至少20个与SEQ ID NO:1所示的核苷酸序列的504-533、510-539、519-548、525-554、588-617、648-677、653-682、657-686、837-866、1234-1263、1239-1268、1360-1389、1374-1403、1503-1532或1545-1574中相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补的核苷酸。In some embodiments, the present invention provides an antisense oligonucleotide comprising an oligonucleotide consisting of 12 to 30 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19 or at least 20 nucleotides that are identical to 504-533, 511-523, 524-536, 537-538 of the nucleotide sequence shown in SEQ ID NO: 1. nucleotides that are at least 80%, 85%, 90%, 95% or 100% complementary to an equal length of consecutive nucleotides in 0-539, 519-548, 525-554, 588-617, 648-677, 653-682, 657-686, 837-866, 1234-1263, 1239-1268, 1360-1389, 1374-1403, 1503-1532 or 1545-1574.
在一些实施方式中,本发明提供一种反义寡核苷酸,其包含由12至30个相连的核苷酸组成的寡核苷酸,所述寡核苷酸包含至少8个、至少9个、至少10个、至少11个、至少12个、至少13个、至少14个、至少15个、至少16个、至少17个、至少18个、至少19个或至少20个与SEQ ID NO:1所示的核苷酸序列的509-528、515-534、524-543、530-549、593-612、653-672、658-677、662-681、842-861、1239-1258、1244-1263、1365-1384、1379-1398、1508-1527或1550-1569中相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补的核苷酸。In some embodiments, the present invention provides an antisense oligonucleotide comprising an oligonucleotide consisting of 12 to 30 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19 or at least 20 nucleotides that are identical to 509-528, 510-529 of the nucleotide sequence shown in SEQ ID NO: 1. 5-534, 524-543, 530-549, 593-612, 653-672, 658-677, 662-681, 842-861, 1239-1258, 1244-1263, 1365-1384, 1379-1398, 1508-1527 or 1550-1569 are at least 80%, 85%, 90%, 95% or 100% complementary nucleotides.
在一些实施方式中,所述寡核苷酸包含SEQ ID NO:3至17中任一个核苷酸序列的至少8个、至少9个、至少10个、至少11个、至少12个、至少13个、至少14个、至少15个、至少16个、至少17个、至少18个、至少19个、或20个连续核苷酸序列。In some embodiments, the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 consecutive nucleotide sequences of any one nucleotide sequence of SEQ ID NO:3 to 17.
在一些实施方式中,所述寡核苷酸由12-30个、14-22个、14-20个、14-18个、14-20个、15-17个、15-25个或16-20个连接的核苷酸组成并具有包含SEQ ID NO:3至17中任一个核苷酸序列的至少8个、至少9个、至少10个、至少11个、至少12个、至少13个、至少14个、至少15个、至少16个、至少17个、至少18个、至少19个、或20个连续核苷酸序列,并且其中当在所述反义寡核苷酸的整个核苷酸序列上测量时,所述反义寡核苷酸具有与人和/或食蟹猴激活素IIB型受体(ACVR2B)的信使RNA(mRNA)(NCBI登录号分别为NM_001106.4,SEQ ID NO.1和XM_015445674.2,SEQ ID NO.2)的核苷酸序列至少80%、至少85%、至少90%、至少95%或100%(优选100%)互补的核苷酸序列。In some embodiments, the oligonucleotide consists of 12-30, 14-22, 14-20, 14-18, 14-20, 15-17, 15-25 or 16-20 linked nucleotides and has at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 consecutive nucleotide sequences comprising any one of SEQ ID NOs: 3 to 17. column, and wherein the antisense oligonucleotide has a nucleotide sequence that is at least 80%, at least 85%, at least 90%, at least 95% or 100% (preferably 100%) complementary to the nucleotide sequence of the messenger RNA (mRNA) of human and/or cynomolgus monkey activin type IIB receptor (ACVR2B) (NCBI accession numbers NM_001106.4, SEQ ID NO.1 and XM_015445674.2, SEQ ID NO.2, respectively) when measured over the entire nucleotide sequence of the antisense oligonucleotide.
在一些实施方式中,所提供的反义寡核苷酸不包括经修饰的核苷酸,例如经修饰的糖部分、经修饰的核碱基部分或经修饰的核苷酸间连接。在这样的实施方式中,例如,本发明提供的反义寡核苷酸可包含SEQ ID NO:3、4、5、6、7、8、9、10、11、12、13、14、15、16或17中任一个所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列。In some embodiments, the antisense oligonucleotides provided do not include modified nucleotides, such as modified sugar moieties, modified nucleobase moieties, or modified internucleotide linkages. In such embodiments, for example, the antisense oligonucleotides provided herein may comprise a nucleotide sequence as set forth in any one of SEQ ID NO: 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, or 17, or a nucleotide sequence having 1, 2, or 3 nucleotide differences therefrom.
在一些实施方式中,所提供的反义寡核苷酸包括经修饰的核苷酸,例如经修饰的糖部分和/或经修饰的核碱基部分和/或经修饰的核苷酸间连接。在优选的实施方式中,所提供的反义寡核苷酸包括经修饰的核苷酸,包括经修饰的糖部分、经修饰的核碱基部分和经修饰的核苷酸间连接。In some embodiments, the antisense oligonucleotides provided include modified nucleotides, such as modified sugar moieties and/or modified nucleobase moieties and/or modified internucleotide linkages. In preferred embodiments, the antisense oligonucleotides provided include modified nucleotides, including modified sugar moieties, modified nucleobase moieties and modified internucleotide linkages.
在一些实施方式中,所述反义寡核苷酸包含由12-30个、14-22个、14-20个、14-18个、14-20个、15-17个、15-25个或16-20个连接的核苷酸组成的寡核苷酸,所述寡核苷酸包含SEQ ID NO:3至17中任一个核苷酸序列的至少8个、至少9个、至少10个、至少11个、至少12个、至少13个、至少14个、至少15个、至少16个、至少17个、至少18个、至少19个、或20个连续核苷酸序列,其中所述反义寡核苷酸包含至少一种选自经修饰的糖部分、经修饰的核碱基部分和经修饰的核苷酸间连接的修饰。In some embodiments, the antisense oligonucleotide comprises an oligonucleotide consisting of 12-30, 14-22, 14-20, 14-18, 14-20, 15-17, 15-25 or 16-20 linked nucleotides, wherein the oligonucleotide comprises at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or 20 consecutive nucleotide sequences of any one nucleotide sequence of SEQ ID NO:3 to 17, wherein the antisense oligonucleotide comprises at least one modification selected from a modified sugar portion, a modified nucleobase portion and a modified internucleotide linkage.
在一些实施方式中,所述反义寡核苷酸所包含的寡核苷酸中的每一个核苷酸均被修饰,所述修饰包括经修饰的糖部分和经修饰的核苷酸间连接。In some embodiments, each nucleotide in the oligonucleotide comprised by the antisense oligonucleotide is modified, including a modified sugar moiety and a modified internucleotide linkage.
在一些实施方式中,所述反义寡核苷酸所包含的寡核苷酸中的每一个核苷酸均被修饰,所述修饰包括经修饰的糖部分、经修饰的核碱基部分和经修饰的核苷酸间连接。In some embodiments, each nucleotide in the oligonucleotide comprised by the antisense oligonucleotide is modified, including a modified sugar moiety, a modified nucleobase moiety, and a modified internucleotide linkage.
在一些实施方式中,所述经修饰的糖部分可以是至少一个双环糖部分、至少一个非双环的经修饰的糖部分和/或至少一种糖替代物。In some embodiments, the modified sugar moiety can be at least one bicyclic sugar moiety, at least one non-bicyclic modified sugar moiety, and/or at least one sugar surrogate.
在一些实施方式中,所述反义寡核苷酸包含至少一个双环糖部分。在一些实施方式中,取代基桥接呋喃糖基环的两个原子以形成第二个环,从而产生双环糖部分。在某些此类实施方案中,双环糖部分在4'与2'呋喃糖环原子之间包含桥。此类4'至2'桥接糖取代基的实例包括(但不限于):4'-CH2-2'、4'-(CH2)2-2'、4'-(CH2)3-2'、4'-CH2-O-2'(“LNA”)、4'-CH2-S-2'、4'-(CH2)2-O-2'(“ENA”)、4'-CH(CH3)-O-2'(称为“受约束乙基”或“cEt”)、4'-CH2-O-CH2-2'、4'-CH2-N(R)-2'、4'-CH(CH2OCH3)-O-2'(“受约束MOE”或“cMOE”)和其类似物(参见例如Seth等人,U.S.7,399,845;Bhat等人,U.S.7,569,686;Swayze等人,U.S.7,741,457;和Swayze等人,U.S.8,022,193)、4'-C(CH3)(CH3)-O-2'和其类似物(参见例如Seth等人,U.S.8,278,283)、4'-CH2-N(OCH3)-2'和其类似物(参见例如Prakash等人,U.S.8,278,425)、4'-CH2-O-N(CH3)-2'(参见例如Allerson等人,U.S.7,696,345和Allerson等人,U.S.8,124,745)、4'-CH2-C(H)(CH3)-2'(参见例如Zhou等人,J.Org.Chem.,2009,74,118-134)、4'-CH2-C(=CH2)-2'和其类似物(参见例如Seth等人,U.S.8,278,426)、4'-C(RaRb)-N(R)-O-2'、4'-C(RaRb)-O-N(R)-2'、4'-CH2-O-N(R)-2'和4'-CH2-N(R)-O-2',其中每个R、Ra和Rb独立地是H、保护基团或C1-C12烷基(参见例如Imanishi等人,U.S.7,427,672)。在某些实施方案中,双环糖部分和并有此类双环糖部分的核苷进一步由异构构型定义。例如,LNA核苷(本文所阐述)可呈α-L构型或呈β-D构型。在优选的实施方式中,所述双环糖部分具有4'-2'桥,所述4'-2'桥优选是cEt或LNA。In some embodiments, the antisense oligonucleotide comprises at least one bicyclic sugar moiety. In some embodiments, two atoms of the substituent bridged furanosyl ring are to form a second ring, thereby producing a bicyclic sugar moiety. In some such embodiments, the bicyclic sugar moiety comprises a bridge between 4' and 2' furanose ring atoms. Examples of such 4' to 2' bridged sugar substituents include, but are not limited to: 4'- CH2-2 ', 4'-( CH2 ) 2-2 ', 4'-( CH2 ) 3-2 ', 4'-CH2- O -2'("LNA"),4'- CH2 -S-2', 4'-( CH2 ) 2 -O-2'("ENA"),4'-CH( CH3 )-O-2' (referred to as "constrained ethyl" or "cEt"), 4'- CH2 -O- CH2-2 ', 4' -CH2-N(R)-2', 4'-CH( CH2OCH3 ) ... )-O-2'("constrainedMOE" or "cMOE") and analogs thereof (see, e.g., Seth et al., U.S. Pat. No. 7,399,845; Bhat et al., U.S. Pat. No. 7,569,686; Swayze et al., U.S. Pat. No. 7,741,457; and Swayze et al., U.S. Pat. No. 8,022,193), 4'-C( CH3 )( CH3 )-O-2' and analogs thereof (see, e.g., Seth et al., U.S. Pat. No. 8,278,283), 4'-CH2-N(OCH3)-2' and analogs thereof (see, e.g., Prakash et al., U.S. Pat. No. 8,278,425), 4'-CH2- ON ( CH3 )-2' (see, e.g., Allerson et al., U.S. Pat. No. 7,696,345 and Allerson et al., U.S. Pat. No. 8,124,745), 4'-CH2- C (H)( CH3 )-O-2' and analogs thereof (see, e.g., Seth et al., U.S. Pat. No. 8,278,283), 4'- CH2 -N(OCH3)-2' and analogs thereof (see, e.g., Prakash et al., U.S. Pat. No. 8,278,425 ) , )-2' (see, e.g., Zhou et al., J. Org. Chem., 2009, 74, 118-134), 4' - CH2 -C(=CH2)-2' and analogs thereof (see, e.g., Seth et al., US8,278,426 ) , 4'-C( RaRb )-N(R)-O-2', 4'- C ( RaRb )-ON(R)-2', 4'- CH2 -ON(R)-2' and 4'- CH2 -N(R)-O-2', wherein each R, Ra and Rb is independently H, a protecting group or a C1 - C12 alkyl group (see, e.g., Imanishi et al., US7,427,672). In certain embodiments, bicyclic sugar moieties and nucleosides incorporating such bicyclic sugar moieties are further defined by isomeric configurations. For example, LNA nucleosides (described herein) may be in the α-L configuration or in the β-D configuration. In a preferred embodiment, the bicyclic sugar moiety has a 4'-2' bridge, which is preferably cEt or LNA.
在一些实施方式中,所述反义寡核苷酸包含至少一个非双环的经修饰的糖部分,此类非桥接取代基可位于呋喃糖基的任何位置,包括(但不限于)位于2'位、4'位和/或5'位的取代基。在某些实施方案中,非双环的经修饰糖部分的一个或多个非桥接取代基具有支链。适于非双环的经修饰糖部分的2'-取代基的实例包括(但不限于):2'-F、2'-OCH3(“OMe”或“O-甲基”)和2'-O(CH2)2OC H3(“MOE”或“O-甲氧基乙基”)。在某些实施方案中,2'-取代基选自:卤基、烯丙基、氨基、叠氮基、SH、CN、OCN、CF3、OCF3、O-C1-C10烷氧基、被取代的O-C1-C10烷氧基、O-C1-C10烷基、被取代的O-C1-C10烷基、S-烷基、N(Rm)-烷基、O-烯基、S-烯基、N(Rm)-烯基、O-炔基、S-炔基、N(Rm)-炔基、O-亚烷基-O-烷基、炔基、烷芳基、芳烷基、O-烷芳基、O-芳烷基、O(CH2)2SCH3、O(CH2)2ON(Rm)(Rn)或OCH2C(=O)-N(Rm)(Rn),其中每个Rm和Rn独立地是H、氨基保护基团、或被取代或未被取代的C1-C10烷基,以及Cook等人,U.S.6,531,584;Cook等人,U.S.5,859,221;和Cook等人,U.S.6,005,087中所阐述的2'-取代基。这些2'-取代基的某些实施方案可进一步被一个或多个独立地选自以下的取代基取代:羟基、氨基、烷氧基、羧基、苄基、苯基、硝基(NO2)、硫醇、硫代烷氧基、硫基烷基、卤素、烷基、芳基、烯基和炔基。适于非双环的经修饰糖部分的4'-取代基的实例包括(但不限于)烷氧基(例如甲氧基)、烷基和Manoharan等人,WO 2015/106128中所阐述的那些基团。适于非双环的经修饰糖部分的5'-取代基的实例包括(但不限于):5'-甲基(R或S)、5'-乙烯基和5'-甲氧基。在某些实施方案中,非双环的经修饰糖部分包含一个以上非桥接糖取代基,例如2'-F-5'-甲基糖部分以及Migawa等人,WO 2008/101157和Rajeev等人,US2013/0203836中所阐述的经修饰的糖部分和经修饰的核苷。In some embodiments, the antisense oligonucleotide comprises at least one non-bicyclic modified sugar moiety, such non-bridging substituents may be located at any position of the furanose group, including but not limited to substituents located at the 2', 4' and/or 5' positions. In certain embodiments, one or more non-bridging substituents of the non-bicyclic modified sugar moiety have a branched chain. Examples of suitable 2'-substituents for the non-bicyclic modified sugar moiety include but are not limited to: 2'-F, 2'-OCH 3 ("OMe" or "O-methyl"), and 2'-O(CH 2 ) 2 OC H 3 ("MOE" or "O-methoxyethyl"). In certain embodiments, the 2'-substituent is selected from the group consisting of halo, allyl, amino, azido, SH, CN, OCN, CF3 , OCF3 , OC1 - C10 alkoxy, substituted OC1 - C10 alkoxy, OC1 - C10 alkyl, substituted OC1 - C10 alkyl, S-alkyl, N( Rm )-alkyl, O-alkenyl, S-alkenyl, N( Rm )-alkenyl, O-alkynyl, S-alkynyl, N( Rm )-alkynyl, O-alkylene-O-alkyl, alkynyl, alkaryl, aralkyl, O-alkaryl, O-aralkyl, O( CH2 ) 2SCH3 , O(CH2)2ON ( Rm ) ( Rn ), or OCH2C (=O)-N( Rm )( Rn ), wherein each Rm and R n is independently H, an amino protecting group, or a substituted or unsubstituted C 1 -C 10 alkyl, and the 2'-substituents described in Cook et al., US6,531,584; Cook et al., US5,859,221; and Cook et al., US6,005,087. Certain embodiments of these 2'-substituents may be further substituted with one or more substituents independently selected from the group consisting of hydroxy, amino, alkoxy, carboxyl, benzyl, phenyl, nitro (NO 2 ), thiol, thioalkoxy, thioalkyl, halogen, alkyl, aryl, alkenyl, and alkynyl. Examples of 4'-substituents suitable for non-bicyclic modified sugar moieties include, but are not limited to, alkoxy (e.g., methoxy), alkyl, and those described in Manoharan et al., WO 2015/106128. Examples of 5'-substituents suitable for non-bicyclic modified sugar moieties include, but are not limited to: 5'-methyl (R or S), 5'-vinyl, and 5'-methoxy. In certain embodiments, non-bicyclic modified sugar moieties include more than one non-bridging sugar substituent, such as 2'-F-5'-methyl sugar moieties and modified sugar moieties and modified nucleosides described in Migawa et al., WO 2008/101157 and Rajeev et al., US2013/0203836.
在某些实施方案中,2'-取代的非双环的经修饰核苷包含糖部分,所述糖部分包含选自以下的非桥接2'-取代基:F、NH2、N3、OCF3、OCH3、O(CH2)3NH2、CH2CH=CH2、OCH2CH=CH2、OCH2CH2OCH3、O(CH2)2SCH3、O(CH2)2ON(Rm)(Rn)、O(CH2)2O(CH2)2N(CH3)2和N-取代的乙酰胺(OCH2C(=O)-N(Rm)(Rn)),其中每个Rm和Rn独立地是H、氨基保护基团、或被取代或未被取代的C1-C10烷基。In certain embodiments, the 2'-substituted non-bicyclic modified nucleoside comprises a sugar moiety comprising a non-bridging 2'-substituent selected from the group consisting of F, NH2 , N3 , OCF3 , OCH3 , O( CH2 ) 3NH2 , CH2CH= CH2 , OCH2CH = CH2 , OCH2CH2OCH3 , O( CH2 ) 2SCH3 , O( CH2 ) 2ON ( Rm ) ( Rn ) , O( CH2 ) 2O ( CH2 ) 2N ( CH3 ) 2 , and N-substituted acetamide ( OCH2C (=O)-N( Rm )( Rn )), wherein each Rm and Rn is independently H, an amino protecting group, or a substituted or unsubstituted C1 - C10 alkyl.
在某些实施方案中,2'-取代的非双环的经修饰核苷包含糖部分,所述糖部分包含选自以下的非桥接2'-取代基:F、OCF3、OCH3、OC H2CH2OCH3、O(CH2)2SCH3、O(CH2)2ON(CH3)2、O(CH2)2O(CH2)2N(CH3)2和OCH2C(=O)-N(H)CH3(“NMA”)。在某些实施方案中,2'-取代的非双环的经修饰核苷包含糖部分,所述糖部分包含选自以下的非桥接2'-取代基:F(2'-F)、OCH3(2'-OMe)和OCH2CH2OCH3(2'-MOE)。In certain embodiments, the 2'-substituted non-bicyclic modified nucleoside comprises a sugar moiety comprising a non-bridging 2'-substituent selected from the group consisting of F, OCF3 , OCH3 , OCH2CH2OCH3 , O( CH2 ) 2SCH3 , O( CH2 ) 2ON (CH3) 2 , O( CH2 ) 2O ( CH2 ) 2N ( CH3 ) 2 , and OCH2C (=O)-N(H) CH3 ("NMA"). In certain embodiments, the 2'-substituted non-bicyclic modified nucleoside comprises a sugar moiety comprising a non-bridging 2' - substituent selected from the group consisting of F (2'-F), OCH3 (2'-OMe), and OCH2CH2OCH3 ( 2' -MOE).
在某些实施方案中,经修饰的呋喃糖基糖部分和并有此类经修饰的呋喃糖基糖部分的核苷进一步由异构构型定义。例如,2'-脱氧呋喃糖基糖部分可呈除天然存在的β-D-脱氧核糖基构型外的七种异构构型。此类经修饰的糖部分阐述于例如WO 2019/157531中,所述文献通过引用并入本文。2'-经修饰的糖部分相对于2'-脱氧呋喃糖基糖部分在2'位具有另一立体中心;因此,此类糖部分具有总计十六种可能的异构构型。除非另有指定,否则本文所阐述的2'-经修饰的糖部分呈β-D-核糖基异构构型。In certain embodiments, modified furanosyl sugar moieties and nucleosides incorporating such modified furanosyl sugar moieties are further defined by isomeric configurations. For example, a 2'-deoxyfuranosyl sugar moiety can be in seven isomeric configurations in addition to the naturally occurring β-D-deoxyribosyl configuration. Such modified sugar moieties are described, for example, in WO 2019/157531, which is incorporated herein by reference. 2'-modified sugar moieties have an additional stereocenter at the 2' position relative to the 2'-deoxyfuranosyl sugar moiety; therefore, such sugar moieties have a total of sixteen possible isomeric configurations. Unless otherwise specified, the 2'-modified sugar moieties described herein are in the β-D-ribosyl isomeric configuration.
在一些实施方式中,所述反义寡核苷酸包含至少一种糖替代物。在某些此类实施方案中,糖部分的氧原子被例如硫、碳或氮原子代替。在某些此类实施方案中,此类经修饰的糖部分也包含如本文所阐述的桥接和/或非桥接取代基。例如,某些糖替代物包含4'-硫原子和位于2'位(参见例如Bhat等人,U.S.7,875,733和Bhat等人,U.S.7,939,677)和/或5'位的取代。In some embodiments, the antisense oligonucleotide comprises at least one sugar surrogate. In some such embodiments, the oxygen atom of the sugar moiety is replaced by, for example, sulfur, carbon or nitrogen atom. In some such embodiments, such modified sugar moieties also include bridged and/or non-bridged substituents as described herein. For example, some sugar surrogate comprises a 4'-sulfur atom and a 2' position (see, for example, Bhat et al., U.S. 7,875,733 and Bhat et al., U.S. 7,939,677) and/or a 5' position substitution.
在某些实施方案中,糖替代物包含具有并非5个原子的环。例如,在某些实施方案中,糖替代物包含6元四氢吡喃(“THP”)。此类四氢吡喃可进一步被修饰或被取代。包含此类经修饰的四氢吡喃的核苷包括(但不限于)己糖醇核酸(“HNA”)、安醇(anitol)核酸(“ANA”)、甘露醇核酸(“MNA”)(参见例如Leumann,CJ.Bioorg.&Med.Chem.2002,10,841-854)、氟HNA(F-HNA,也可称为F-THP或3'-氟四氢吡喃)。In certain embodiments, the sugar surrogate comprises a ring having other than 5 atoms. For example, in certain embodiments, the sugar surrogate comprises a 6-membered tetrahydropyran ("THP"). Such tetrahydropyrans may be further modified or substituted. Nucleosides comprising such modified tetrahydropyrans include, but are not limited to, hexitol nucleic acids ("HNA"), anitol nucleic acids ("ANA"), mannitol nucleic acids ("MNA") (see, e.g., Leumann, CJ. Bioorg. & Med. Chem. 2002, 10, 841-854), fluoro-HNA (F-HNA, also referred to as F-THP or 3'-fluorotetrahydropyran).
在某些实施方案中,糖替代物包含具有5个以上原子和一个以上杂原子的环。例如,已报道包含吗啉基糖部分的核苷和其在寡核苷酸中的用途。在某些实施方案中,糖替代物包含非环状部分。包含此类非环状糖替代物的核苷和寡核苷酸的实例包括(但不限于):肽核酸(“PNA”)、非环状丁基核酸(参见例如Kumar等人,Org.Biomol.Chem.,2013,11,5853-5865)以及Manoharan等人,WO2011/133876中所阐述的核苷和寡核苷酸。通过引入具有与其共价连接的阳离子脂质或其等同物的修饰的核碱基,可以使PNA对哺乳动物细胞膜是高渗透性的(参见例如WO2019022434和WO2009113828)。在优选的实施方式中,糖替代物选自POM、PNA、THP和F-HNA。In certain embodiments, sugar substitutes include rings with more than 5 atoms and more than one heteroatom. For example, nucleosides comprising morpholinyl sugar moieties and their uses in oligonucleotides have been reported. In certain embodiments, sugar substitutes include acyclic moieties. Examples of nucleosides and oligonucleotides comprising such acyclic sugar substitutes include, but are not limited to: peptide nucleic acids ("PNA"), acyclic butyl nucleic acids (see, for example, Kumar et al., Org. Biomol. Chem., 2013, 11, 5853-5865) and Manoharan et al., nucleosides and oligonucleotides described in WO2011/133876. By introducing a modified nucleobase with a cationic lipid or its equivalent covalently attached thereto, PNA can be made highly permeable to mammalian cell membranes (see, for example, WO2019022434 and WO2009113828). In a preferred embodiment, sugar substitutes are selected from POM, PNA, THP and F-HNA.
在一些实施方式中,所述反义寡核苷酸包含一个或多个包含未经修饰的核碱基的核苷。在某些实施方案中,反义寡核苷酸包含一个或多个包含经修饰的核碱基的核苷。在某些实施方案中,反义寡核苷酸包含一个或多个不包含核碱基的核苷,称为无碱基核苷。In some embodiments, the antisense oligonucleotide comprises one or more nucleosides comprising unmodified nucleobases. In certain embodiments, the antisense oligonucleotide comprises one or more nucleosides comprising modified nucleobases. In certain embodiments, the antisense oligonucleotide comprises one or more nucleosides that do not comprise nucleobases, referred to as abasic nucleosides.
在某些实施方案中,经修饰的核碱基选自:5-取代的嘧啶(例如5'甲基胞嘧啶,m5C)、6-氮杂嘧啶、烷基或炔基取代的嘧啶、烷基取代的嘌呤以及N-2、N-6和O-6取代的嘌呤。在某些实施方案中,经修饰的核碱基选自:2-氨基丙基腺嘌呤、5-羟甲基胞嘧啶、黄嘌呤、次黄嘌呤、2-氨基腺嘌呤、6-N-甲基鸟嘌呤、6-N-甲基腺嘌呤、2-丙基腺嘌呤、2-硫尿嘧啶、2-硫胸腺嘧啶和2-硫胞嘧啶、5-丙炔基(-C≡C-CH3)尿嘧啶、5-丙炔基胞嘧啶、6-偶氮尿嘧啶、6-偶氮胞嘧啶、6-偶氮胸腺嘧啶、5-核糖基尿嘧啶(假尿嘧啶)、4-硫尿嘧啶;8-卤基、8-氨基、8-硫醇、8-硫基烷基、8-羟基、8-氮杂和其他8-取代的嘌呤;5-卤基、特别是5-溴、5-三氟甲基、5-卤基尿嘧啶和5-卤基胞嘧啶;7-甲基鸟嘌呤、7-甲基腺嘌呤、2-F-腺嘌呤、2-氨基腺嘌呤、7-去氮鸟嘌呤、7-去氮腺嘌呤、3-去氮鸟嘌呤、3-去氮腺嘌呤、6-N-苯甲酰基腺嘌呤、2-N-异丁酰基鸟嘌呤、5-甲基胞嘧啶、4-N-苯甲酰基胞嘧啶、4-N-苯甲酰基尿嘧啶、5-甲基4-N-苯甲酰基胞嘧啶、5-甲基4-N-苯甲酰基尿嘧啶、通用碱基、疏水性碱基、混杂碱基、大小扩大的碱基和氟化碱基。其他经修饰的核碱基包括三环嘧啶,例如1,3-二氮杂吩噁嗪-2-酮、1,3-二氮杂吩噻嗪-2-酮和9-(2-氨基乙氧基)-1,3-二氮杂吩噁嗪-2-酮(G-钳)。经修饰的核碱基还可包括嘌呤或嘧啶碱基被其他杂环代替的那些核碱基,所述其他杂环例如7-去氮-腺嘌呤、7-去氮鸟苷、2-氨基吡啶和2-吡啶酮。在优选的实施方式中,所述反义寡核苷酸包含一个或多个5-甲基胞嘧啶(m5C)。In certain embodiments, the modified nucleobase is selected from: 5-substituted pyrimidines (e.g., 5'methylcytosine, m5C), 6-azapyrimidines, alkyl or alkynyl substituted pyrimidines, alkyl substituted purines, and N-2, N-6, and O-6 substituted purines. In certain embodiments, the modified nucleobase is selected from: 2-aminopropyladenine, 5-hydroxymethylcytosine, xanthine, hypoxanthine, 2-aminoadenine, 6-N-methylguanine, 6-N-methyladenine, 2-propyladenine, 2-thiouracil, 2-thiothymine and 2-thiocytosine, 5-propynyl (-C≡C-CH 3 )uracil, 5-propynylcytosine, 6-azouracil, 6-azocytosine, 6-azothymine, 5-ribosyluracil (pseudouracil), 4-thiouracil; 8-halo, 8-amino, 8-thiol, 8-thioalkyl, 8-hydroxy, 8-aza and other 8-substituted purines; 5-halo, especially 5-bromo, 5-trifluoromethyl, 5-halouracil and 5-halocytosine; 7-methylguanine, 7-methyladenine, 2-F-adenine The present invention relates to a nucleobase comprising a purine, a 2-aminoadenine, a 7-deazaguanine, a 7-deazaadenine, a 3-deazaguanine, a 3-deazaadenine, a 6-N-benzoyladenine, a 2-N-isobutyrylguanine, a 5-methylcytosine, a 4-N-benzoylcytosine, a 4-N-benzoyluracil, a 5-methyl4-N-benzoylcytosine, a 5-methyl4-N-benzoyluracil, a universal base, a hydrophobic base, a promiscuous base, a base with an expanded size, and a fluorinated base. Other modified nucleobases include tricyclic pyrimidines such as 1,3-diazaphenoxazin-2-one, 1,3-diazaphenathiazin-2-one, and 9-(2-aminoethoxy)-1,3-diazaphenoxazin-2-one (G-clamp). Modified nucleobases may also include those in which the purine or pyrimidine base is replaced by other heterocycles, such as 7-deaza-adenine, 7-deazaguanosine, 2-aminopyridine and 2-pyridone. In a preferred embodiment, the antisense oligonucleotide comprises one or more 5-methylcytosine (m5C).
在一些实施方式中,所述经修饰的核碱基可以是共价连接有阳离子脂质的核碱基。通过引入具有与其共价连接的阳离子脂质或其等同物的修饰的核碱基,可以使反义寡核苷酸对哺乳动物细胞膜是高渗透性的。合适的共价连接有阳离子脂质修饰可以是在WO2019022434A1中描述的那些修饰,通过引用将其全部内容合并至本文中。In some embodiments, the modified nucleobase can be a nucleobase covalently attached to a cationic lipid. By introducing a modified nucleobase with a cationic lipid covalently attached thereto or its equivalent, antisense oligonucleotides can be made highly permeable to mammalian cell membranes. Suitable covalent attachment of cationic lipid modifications can be those modifications described in WO2019022434A1, the entire contents of which are incorporated herein by reference.
在一些实施方式中,所述反义寡核苷酸包含至少一个经修饰的核苷酸间连接。在优选的实施方式中,所述反义寡核苷酸的每个核苷酸间连接都是经修饰的核苷酸间连接。在某些实施方案中,可使用任何核苷酸间连接将反义寡核苷酸的核苷连接在一起。根据存在或不存在磷原子来定义两种主要类别的核苷间连接基团。代表性含磷核苷酸间连接包括(但不限于)磷酸二酯,其含有磷酸二酯键(“P(O2)=O”)(也称为未经修饰的键联或天然存在的键联);磷酸三酯;甲基膦酸酯;氨基磷酸酯(PN);硫代磷酸酯(“P(O2)=S”,PS)和二硫代磷酸酯(“HS-P=S”)。氨基磷酸酯(PN)可具有结构式-N(R)P(=X)(OH)O-、-OP(=X)(OH)N(R)-、-O-P(NR)(=X)O-,-N(SO2R)P(=X)(OH)O-、-OP(=X)(OH)N(SO2R)-、或-O-P(NSO2R)(=X)O-(“MsPA”),其中X是O或S,R可以是任选取代的烷基、芳基、杂芳基或杂环烷基;或NR可以是任选取代的环胍基部分、任选取代的三唑基或Tmg基团。更多PN结构可参见WO2023220744、WO 2019/032612和WO2021/030778,通过引用将其全文合并至本文中。In some embodiments, the antisense oligonucleotide comprises at least one modified internucleotide linkage. In preferred embodiments, each internucleotide linkage of the antisense oligonucleotide is a modified internucleotide linkage. In certain embodiments, any internucleotide linkage can be used to link the nucleosides of the antisense oligonucleotide together. Two major classes of internucleoside linkage groups are defined based on the presence or absence of a phosphorus atom. Representative phosphorus-containing internucleotide linkages include, but are not limited to, phosphodiester, which contains a phosphodiester bond ("P(O 2 )=O") (also known as an unmodified linkage or a naturally occurring linkage); phosphotriester; methylphosphonate; phosphoramidate (PN); phosphorothioate ("P(O 2 )=S", PS) and phosphorodithioate ("HS-P=S"). The phosphoramidate (PN) may have the formula -N(R)P(=X)(OH)O-, -OP(=X)(OH)N(R)-, -OP(NR)(=X)O-, -N(SO2R)P(=X)(OH)O-, -OP(=X)(OH)N(SO 2 R)-, or -OP(NSO 2 R)(=X)O- ("MsPA"), wherein X is O or S, R may be an optionally substituted alkyl, aryl, heteroaryl or heterocycloalkyl; or NR may be an optionally substituted cycloguanidine moiety, an optionally substituted triazolyl or a Tmg group. More PN structures may be found in WO2023220744, WO 2019/032612 and WO2021/030778, which are incorporated herein by reference in their entirety.
代表性的不含磷核苷间连接基团包括(但不限于)亚甲基甲基亚氨基(-CH2-N(CH3)-O-CH2-)、硫代二酯、硫羰氨基甲酸酯(-O-C(=O)(NH)-S-);硅氧烷(-O-SiH2-O-);和N,N'-二甲基肼(-CH2-N(CH3)-N(CH3)-)。经修饰的核苷酸间连接与天然存在的磷酸二酯核苷酸间连接相比可用于改变、通常增加寡核苷酸的核酸酶抗性。在某些实施方案中,可将具有手性原子的核苷酸间连接制备成外消旋混合物或分开的对映异构体。制备含磷和不含磷核苷酸间连接的方法是本领域技术人员众所周知的。Representative non-phosphorus-containing internucleoside linking groups include, but are not limited to, methylenemethylimino (-CH2 - N( CH3 )-O- CH2- ), thiodiesters, thionocarbamates (-OC(=O)(NH)-S-); siloxanes (-O-SiH2- O- ); and N,N'-dimethylhydrazine ( -CH2 -N( CH3 )-N( CH3 )-). Modified internucleotide linkages can be used to alter, typically increase, the nuclease resistance of an oligonucleotide compared to naturally occurring phosphodiester internucleotide linkages. In certain embodiments, internucleotide linkages with chiral atoms can be prepared as racemic mixtures or as separated enantiomers. Methods for preparing phosphorus-containing and non-phosphorus-containing internucleotide linkages are well known to those of skill in the art.
具有手性中心的代表性核苷酸间连接包括(但不限于)烷基膦酸酯和硫代磷酸酯。可将包含具有手性中心的核苷酸间连接的反义寡核苷酸制备成包含立构无规核苷酸间连接的反义寡核苷酸的群体,或制备成包含呈特定立体化学构型的硫代磷酸酯核苷酸间连接的反义寡核苷酸的群体。在某些实施方案中,反义寡核苷酸的群体包含硫代磷酸酯核苷酸间连接,其中所有所述硫代磷酸酯核苷酸间连接都是立构无规的。此类反义寡核苷酸可使用随机选择每个硫代磷酸酯核苷酸间连接的立体化学构型的合成方法来生成。尽管如此,如本领域技术人员所充分理解,每个个别寡核苷酸分子的每个个别硫代磷酸酯具有确定的立体构型。在某些实施方案中,反义寡核苷酸的群体富集包含一个或多个呈特定独立选择的立体化学构型的特定硫代磷酸酯核苷酸间连接的反义寡核苷酸。在某些实施方案中,群体中至少65%的分子中存在特定构型的特定硫代磷酸酯核苷酸间连接。在某些实施方案中,群体中至少70%的分子中存在特定构型的特定硫代磷酸酯核苷酸间连接。在某些实施方案中,群体中至少80%的分子中存在特定构型的特定硫代磷酸酯核苷酸间连接。在某些实施方案中,群体中至少90%的分子中存在特定构型的特定硫代磷酸酯核苷酸间连接。在某些实施方案中,群体中至少99%的分子中存在特定构型的特定硫代磷酸酯核苷酸间连接。反义寡核苷酸的此类手性富集群体可使用本领域中已知的合成方法来生成,例如以下文献中所阐述的方法:Oka等人,JACS125,8307(2003);Wan等人,Nuc.Acid.Res.42,13456(2014);和WO 2017/015555。在某些实施方案中,反义寡核苷酸的群体富集具有至少一种呈(Sp)构型的所指示硫代磷酸酯的反义寡核苷酸。在某些实施方案中,反义寡核苷酸的群体富集具有至少一种呈(Rp)构型的硫代磷酸酯的反义寡核苷酸。Representative internucleotide connections with chiral centers include, but are not limited to, alkylphosphonates and phosphorothioates. Antisense oligonucleotides comprising internucleotide connections with chiral centers can be prepared into a population of antisense oligonucleotides comprising stereo-random internucleotide connections, or prepared into a population of antisense oligonucleotides comprising internucleotide connections of phosphorothioates in a specific stereochemical configuration. In certain embodiments, the population of antisense oligonucleotides comprises phosphorothioate internucleotide connections, wherein all of the phosphorothioate internucleotide connections are stereo-random. Such antisense oligonucleotides can be generated using a synthetic method that randomly selects the stereochemical configuration of each phosphorothioate internucleotide connection. Nevertheless, as fully understood by those skilled in the art, each individual phosphorothioate of each individual oligonucleotide molecule has a determined stereo configuration. In certain embodiments, the population of antisense oligonucleotides is enriched with antisense oligonucleotides comprising one or more specific phosphorothioate internucleotide connections in a specific independently selected stereochemical configuration. In certain embodiments, at least 65% of the molecules in the population have specific phosphorothioate internucleotide connections of a specific configuration. In certain embodiments, a specific phosphorothioate internucleotide linkage of a specific configuration is present in at least 70% of the molecules in the population. In certain embodiments, a specific phosphorothioate internucleotide linkage of a specific configuration is present in at least 80% of the molecules in the population. In certain embodiments, a specific phosphorothioate internucleotide linkage of a specific configuration is present in at least 90% of the molecules in the population. In certain embodiments, a specific phosphorothioate internucleotide linkage of a specific configuration is present in at least 99% of the molecules in the population. Such chiral enriched populations of antisense oligonucleotides can be generated using synthetic methods known in the art, such as those described in the following documents: Oka et al., JACS 125, 8307 (2003); Wan et al., Nuc. Acid. Res. 42, 13456 (2014); and WO 2017/015555. In certain embodiments, the population of antisense oligonucleotides is enriched with antisense oligonucleotides having at least one indicated phosphorothioate in a (Sp) configuration. In certain embodiments, the population of antisense oligonucleotides is enriched for antisense oligonucleotides having at least one phosphorothioate in the (Rp) configuration.
在一些实施方式中,所述反义寡核苷酸包括间隙聚体(Gapmer)。所述间隙聚体由两个外部区或“翼”和中央或内部区或“间隙”定义。间隙聚体基序的三个区(5'翼、间隙和3'翼)形成核苷的邻接序列,其中每个翼的核苷的至少一些糖部分不同于间隙的核苷的至少一些糖部分。具体而言,每个翼中最靠近间隙的核苷(5'翼的最3'端核苷和3'翼的最5'端核苷)的至少糖部分不同于相邻间隙核苷的糖部分,由此界定翼与间隙之间的边界(即,翼/间隙交界)。在某些实施方案中,间隙内的糖部分彼此相同。在某些实施方案中,间隙包括一个或多个核苷,所述核苷所具有的糖部分不同于间隙的一个或多个其他核苷的糖部分。在某些实施方案中,两个翼的糖基序彼此相同(对称间隙聚体)。在某些实施方案中,5'翼的糖基序不同于3'翼的糖基序(不对称间隙聚体)。In some embodiments, the antisense oligonucleotide includes a gapmer. The gapmer is defined by two external regions or "wings" and a central or internal region or "gap". The three regions (5' wing, gap and 3' wing) of the gapmer motif form a contiguous sequence of nucleosides, wherein at least some sugar moieties of the nucleosides of each wing are different from at least some sugar moieties of the nucleosides of the gap. Specifically, at least the sugar moiety of the nucleosides closest to the gap in each wing (the most 3' end nucleosides of the 5' wing and the most 5' end nucleosides of the 3' wing) is different from the sugar moiety of the adjacent gap nucleosides, thereby defining the boundary between the wing and the gap (i.e., the wing/gap junction). In certain embodiments, the sugar moieties in the gap are identical to each other. In certain embodiments, the gap includes one or more nucleosides, and the sugar moieties of the nucleosides are different from the sugar moieties of one or more other nucleosides of the gap. In certain embodiments, the sugar motifs of the two wings are identical to each other (symmetrical gapmers). In certain embodiments, the sugar motifs of the 5' wing are different from the sugar motifs of the 3' wing (asymmetric gapmers).
在一些实施方式中,所述间隙聚体包括:(a)5'区,其由1-6个连接的5'区核苷酸组成;(b)中央区,其由6-10个连接的中央区核苷酸组成;和(c)3'区,其由1-6个连接的3'区核苷酸组成;其中所述5'区和所述3'区的核苷酸中的每一个都包含选自2'-MOE、LNA和cEt修饰的糖部分,并且所述中央区的核苷酸中的至少6个包含2'-脱氧糖部分。In some embodiments, the gapmer comprises: (a) a 5' region consisting of 1-6 linked 5' region nucleotides; (b) a central region consisting of 6-10 linked central region nucleotides; and (c) a 3' region consisting of 1-6 linked 3' region nucleotides; wherein each of the nucleotides in the 5' region and the 3' region comprises a sugar moiety modified from 2'-MOE, LNA and cEt, and at least 6 of the nucleotides in the central region comprise a 2'-deoxy sugar moiety.
在一些实施方式中,所述间隙聚体具有选自以下的糖基序(5'至3'):eekddddddddddkke、ekkddddddddddkke、kkkdyddddddddkkk、kkkddydddddddkkk、kkkdddyddddddkkk、kkkddddddddddkkk或eeeeeddddddddddeeeee;其中e表示2'-MOE糖部分,k表示cEt糖部分,d表示2'-脱氧糖部分,并且y表示2'-OMe糖部分。In some embodiments, the gapmer has a sugar motif (5' to 3') selected from the following: eekddddddddddkke, ekkddddddddddkke, kkkdyddddddddkkk, kkkddydddddddkkk, kkkdddyddddddkkk, kkkddddddddddddkkk or eeeeeddddddddddeeeee; wherein e represents a 2'-MOE sugar moiety, k represents a cEt sugar moiety, d represents a 2'-deoxy sugar moiety, and y represents a 2'-OMe sugar moiety.
在优选的实施方式中,所述间隙聚体具有eeeeeddddddddddeeeee糖基序(5'至3'),其中e表示2'-MOE糖部分,d表示2'-脱氧糖部分。In a preferred embodiment, the gapmer has a eeeeeddddddddddeeeee sugar motif (5' to 3'), wherein e represents a 2'-MOE sugar moiety and d represents a 2'-deoxy sugar moiety.
在优选的实施方式中,所述间隙聚体的核苷酸间连接为PS。在这样的实施方式中,所述间隙聚体包含如SEQ ID NO.18至32任一个所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其任一个组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.18所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.19所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.20所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.21所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.22所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.23所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.24所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.25所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.26所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.27所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.28所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.29所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.30所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.31所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。在一个实施方式中,所述间隙聚体包含如SEQ ID NO.32所示的核苷酸序列或与其具有1、2或3个核苷酸差异的核苷酸序列,或由其组成。In a preferred embodiment, the internucleotide connection of the gap polymer is PS. In such an embodiment, the gap polymer comprises a nucleotide sequence as shown in any one of SEQ ID NO.18 to 32 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists of any one thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.18 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists of it. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.19 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists of it. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.20 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists of it. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.21 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists of it. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.22 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.23 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.24 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.25 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.26 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.27 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.28 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.29 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.30 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.31 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof. In one embodiment, the gap polymer comprises a nucleotide sequence as shown in SEQ ID NO.32 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, or consists thereof.
用于抑制ACVR2B基因表达的RNAi剂RNAi agents for inhibiting ACVR2B gene expression
本发明的一个方面提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链包含至少15个、至少16个、至少17个、至少18个、至少19个、至少20个或至少21个与编码ACVR2B的mRNA的靶区域的相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补或与其相差不超过3个核苷酸的核苷酸。One aspect of the present invention provides a RNAi agent for inhibiting the expression of the ACVR2B gene, comprising a sense strand and an antisense strand forming a complementary double-stranded region, wherein the antisense strand comprises at least 15, at least 16, at least 17, at least 18, at least 19, at least 20 or at least 21 nucleotides that are at least 80%, 85%, 90%, 95% or 100% complementary to an equal length of consecutive nucleotides of a target region of an mRNA encoding ACVR2B or differ from it by no more than 3 nucleotides.
在一些实施方式中,其中所述靶区域为SEQ ID NO:1所示的核苷酸序列的508-534、634-660、655-695、733-774、756-782、929-955、1049-1089、1141-1180、1189-1215、1243-1269、1276-1321、1377-1403、1547-1596、1642-1690、1744-1773、1916-1942或1949-1975。在一些实施方式中,所述靶区域为SEQ ID NO:1所示的核苷酸序列的508-534、634-660、655-681、658-684、669-695、733-759、748-774、756-782、929-955、1049-1075、1052-1078、1063-1089、1141-1167、1154-1180、1189-1215、1243-1269、1276-1302、1280-1306、1283-1309、1291-1317、1295-1321、1377-1403、1547-1573、1552-1578、1570-1596、1642-1668、1664-1690、1744-1770、1747-1773、1916-1942或1949-1975。在优选的实施方式中,其中所述靶区域为SEQ ID NO:1所示的核苷酸序列的511-531、637-657、658-678、661-681、672-692、736-756、751-771、759-779、932-952、1052-1072、1055-1075、1066-1086、1144-1164、1157-1177、1192-1212、1246-1266、1279-1299、1283-1303、1286-1306、1294-1314、1298-1318、1380-1400、1550-1570、1555-1575、1573-1593、1645-1665、1667-1687、1747-1767、1750-1770、1919-1939或1952-1972。In some embodiments, the target region is 508-534, 634-660, 655-695, 733-774, 756-782, 929-955, 1049-1089, 1141-1180, 1189-1215, 1243-1269, 1276-1321, 1377-1403, 1547-1596, 1642-1690, 1744-1773, 1916-1942 or 1949-1975 of the nucleotide sequence shown in SEQ ID NO:1. In some embodiments, the target region is 508-534, 634-660, 655-681, 658-684, 669-695, 733-759, 748-774, 756-782, 929-955, 1049-1075, 1052-1078, 1063-1089, 1141-1167, 1154-1180, 1189-1 215, 1243-1269, 1276-1302, 1280-1306, 1283-1309, 1291-1317, 1295-1321, 1377-1403, 1547-1573, 1552-1578, 1570-1596, 1642-1668, 1664-1690, 1744-1770, 1747-1773, 1916-1942 or 1949-1975. In a preferred embodiment, the target region is 511-531, 637-657, 658-678, 661-681, 672-692, 736-756, 751-771, 759-779, 932-952, 1052-1072, 1055-1075, 1066-1086, 1144-1164, 1157-1177, 1192- 1212, 1246-1266, 1279-1299, 1283-1303, 1286-1306, 1294-1314, 1298-1318, 1380-1400, 1550-1570, 1555-1575, 1573-1593, 1645-1665, 1667-1687, 1747-1767, 1750-1770, 1919-1939 or 1952-1972.
因此,在一些实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链包含至少15个、至少16个、至少17个、至少18个、至少19个、至少20个或至少21个与SEQ ID NO:1所示的核苷酸序列的508-534、634-660、655-695、733-774、756-782、929-955、1049-1089、1141-1180、1189-1215、1243-1269、1276-1321、1377-1403、1547-1596、1642-1690、1744-1773、1916-1942或1949-1975的相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补或与其相差不超过3个核苷酸的核苷酸。Therefore, in some embodiments, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the antisense strand comprises at least 15, at least 16, at least 17, at least 18, at least 19, at least 20 or at least 21 residues that are identical to 508-534, 634-660, 655-695, 733-774, 756-782, An equal length of consecutive nucleotides of 929-955, 1049-1089, 1141-1180, 1189-1215, 1243-1269, 1276-1321, 1377-1403, 1547-1596, 1642-1690, 1744-1773, 1916-1942 or 1949-1975 is at least 80%, 85%, 90%, 95% or 100% complementary or differs from nucleotides therewith by no more than 3 nucleotides.
在优选的实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链包含至少15个、至少16个、至少17个、至少18个、至少19个、至少20个或至少21个与SEQ ID NO:1所示的核苷酸序列的508-534、634-660、655-681、658-684、669-695、733-759、748-774、756-782、929-955、1049-1075、1052-1078、1063-1089、1141-1167、1154-1180、1189-1215、1243-1269、1276-1302、1280-1306、1283-1309、1291-1317、1295-1321、1377-1403、1547-1573、1552-1578、1570-1596、1642-1668、1664-1690、1744-1770、1747-1773、1916-1942或1949-1975的相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补或与其相差不超过3个核苷酸的核苷酸。In a preferred embodiment, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the antisense strand comprises at least 15, at least 16, at least 17, at least 18, at least 19, at least 20 or at least 21 508-534, 634-660, 655-681, 658-684, 669-695, 733-759, 748-774, 756-782, 929-955, 1049-1075, 1052-1078, 1063-1089, 1141-1 167, 1154-1180, 1189-1215, 1243-1269, 1276-1302, 1280-1306, 1283-1309, 1291-1317, 1295-1321, 1377-1403, 1547-1573, 1552-1578, 1570-1596, 1642-1668, 1664-1690, 1744-1770, 1747-1773, 1916-1942, or 1949-1975, which are at least 80%, 85%, 90%, 95% or 100% complementary to, or differ from, nucleotides by no more than 3 nucleotides.
在优选的实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链包含至少15个、至少16个、至少17个、至少18个、至少19个、至少20个或至少21个与SEQ ID NO:1所示的核苷酸序列的511-531、637-657、658-678、661-681、672-692、736-756、751-771、759-779、932-952、1052-1072、1055-1075、1066-1086、1144-1164、1157-1177、1192-1212、1246-1266、1279-1299、1283-1303、1286-1306、1294-1314、1298-1318、1380-1400、1550-1570、1555-1575、1573-1593、1645-1665、1667-1687、1747-1767、1750-1770、1919-1939或1952-1972的相等长度的连续核苷酸至少80%、85%、90%、95%或100%互补或与其相差不超过3个核苷酸的核苷酸。In a preferred embodiment, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the antisense strand comprises at least 15, at least 16, at least 17, at least 18, at least 19, at least 20 or at least 21 nucleotides that are identical to 511-531, 637-657, 658-678, 661-681, 672-692, 736-756, 751-771, 759-779, 932-952, 1052-1072, 1055-1075, 1066-1086, 1144-1145 of the nucleotide sequence shown in SEQ ID NO:1. 164, 1157-1177, 1192-1212, 1246-1266, 1279-1299, 1283-1303, 1286-1306, 1294-1314, 1298-1318, 1380-1400, 1550-1570, 1555-1575, 1573-1593, 1645-1665, 1667-1687, 1747-1767, 1750-1770, 1919-1939 or 1952-1972 are at least 80%, 85%, 90%, 95% or 100% complementary to, or differ from, nucleotides by no more than 3 nucleotides.
在一些实施方式中,其中所述反义链包含选自SEQ ID NO:64至94以及与它们各自具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸。In some embodiments, the antisense strand comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences from each of them.
在一些实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链包含选自SEQ ID NO:64至94的任一核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸。In some embodiments, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense chain and an antisense chain forming complementary double-stranded regions, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides of any nucleotide sequence selected from SEQ ID NO: 64 to 94.
在一些实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链包含选自与SEQ ID NO:64至94的任一核苷酸序列具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸。In some embodiments, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense chain and an antisense chain that form complementary double-stranded regions, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from a nucleotide sequence having 1, 2 or 3 nucleotide differences with any one of the nucleotide sequences of SEQ ID NO: 64 to 94.
在本发明中,当提及1、2或3个核苷酸差异时,所述1、2或3个核苷酸差异可位于双链区之外的正义链和/或反义链上。在一些实施方式中,所述1、2或3个核苷酸差异位于双链区之内的正义链和/或反义链上。在一些实施方式中,所述1、2或3个核苷酸差异中的一部分位于双链区之内的正义链和/或反义链上,另一部分位于双链区之外的正义链和/或反义链上。对于反义链,在一些实施方式中,所述1、2或3个核苷酸差异位于反义链的最3'端或最5'端。在一些实施方式中,所述1、2或3个核苷酸差异位于反义链的最3'端和最5'端之间。在一些实施方式中,所述1、2或3个核苷酸差异中的1个或2个位于反义链的最3'端或最5'端,另1个或2个位于反义链的最3'端和最5'端之间。对于正义链,在一些实施方式中,所述1、2或3个核苷酸差异位于正义链的最3'端或最5'端。在一些实施方式中,所述1、2或3个核苷酸差异位于正义链的最3'端和最5'端之间。在一些实施方式中,所述1、2或3个核苷酸差异中的1个或2个位于正义链的最3'端或最5'端,另1个或2个位于正义链的最3'端和最5'端之间。In the present invention, when 1, 2 or 3 nucleotide differences are mentioned, the 1, 2 or 3 nucleotide differences may be located on the sense strand and/or antisense strand outside the double-stranded region. In some embodiments, the 1, 2 or 3 nucleotide differences are located on the sense strand and/or antisense strand within the double-stranded region. In some embodiments, a portion of the 1, 2 or 3 nucleotide differences are located on the sense strand and/or antisense strand within the double-stranded region, and another portion is located on the sense strand and/or antisense strand outside the double-stranded region. For the antisense strand, in some embodiments, the 1, 2 or 3 nucleotide differences are located at the 3' end or the 5' end of the antisense strand. In some embodiments, the 1, 2 or 3 nucleotide differences are located between the 3' end and the 5' end of the antisense strand. In some embodiments, 1 or 2 of the 1, 2 or 3 nucleotide differences are located at the 3' end or the 5' end of the antisense strand, and the other 1 or 2 are located between the 3' end and the 5' end of the antisense strand. For the sense strand, in some embodiments, the 1, 2 or 3 nucleotide differences are located at the 3'-most end or the 5'-most end of the sense strand. In some embodiments, the 1, 2 or 3 nucleotide differences are located between the 3'-most end and the 5'-most end of the sense strand. In some embodiments, 1 or 2 of the 1, 2 or 3 nucleotide differences are located at the 3'-most end or the 5'-most end of the sense strand, and the other 1 or 2 are located between the 3'-most end and the 5'-most end of the sense strand.
在一些实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链包含选自与SEQ ID NO:64至94的任一核苷酸序列具有1个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸,所述1个核苷酸差异位于所述反义链的最3'端。在一些实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链包含选自与SEQ ID NO:64至94的任一核苷酸序列具有2个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸,所述2个核苷酸差异连续地位于所述反义链的最3'端。In some embodiments, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, comprising a sense strand and an antisense strand that form a complementary double-stranded region, wherein the antisense strand comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20, or 21) consecutive nucleotides selected from a nucleotide sequence having 1 nucleotide difference with any one of the nucleotide sequences of SEQ ID NO: 64 to 94, and the 1 nucleotide difference is located at the 3'-most end of the antisense strand. In some embodiments, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, comprising a sense strand and an antisense strand that form a complementary double-stranded region, wherein the antisense strand comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20, or 21) consecutive nucleotides selected from a nucleotide sequence having 2 nucleotide differences with any one of the nucleotide sequences of SEQ ID NO: 64 to 94, and the 2 nucleotide differences are continuously located at the 3'-most end of the antisense strand.
在一些实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链不超过23个核苷酸,并且包含选自SEQ ID NO:64至94的任一核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸。In some embodiments, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense chain and an antisense chain that form complementary double-stranded regions, wherein the antisense chain does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from any one nucleotide sequence of SEQ ID NO: 64 to 94.
在一些实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中所述反义链不超过23个核苷酸,并且包含选自与SEQ ID NO:64至94的任一核苷酸序列具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸。In some embodiments, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the antisense strand does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from a nucleotide sequence having 1, 2 or 3 nucleotide differences with any one of the nucleotide sequences of SEQ ID NO: 64 to 94.
本发明的一个方面提供用于抑制ACVR2B基因表达的RNAi剂,其包含反义链,其中所述反义链包含选自SEQ ID NO:64至94以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸。One aspect of the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises an antisense chain, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom.
在一些实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含反义链,其中所述反义链包含选自SEQ ID NO:64至94的任一核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸。In some embodiments, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises an antisense chain, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides of any nucleotide sequence selected from SEQ ID NO: 64 to 94.
在一些实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含反义链,其中所述反义链包含选自与SEQ ID NO:64至94的任一核苷酸序列具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸。In some embodiments, the present invention provides an RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises an antisense chain, wherein the antisense chain comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from a nucleotide sequence having 1, 2 or 3 nucleotide differences from any one of the nucleotide sequences of SEQ ID NO: 64 to 94.
在一些实施方案中,双链区的长度为约17至约23个碱基对。例如,合适长度的双链区是约17至约22个碱基对、约17至约21个碱基对,约17至约20个碱基对、约17至约19个碱基对、约17至约18碱基对、约18至约23碱基对、约18至约22碱基对、约18至约21碱基对、约18至约20碱基对、约19至23个碱基对、约19至22个碱基对、约19至21个碱基对、约20至23个碱基对、约20至22个碱基对或约21至23个碱基对。在某些实施方案中,双链区的长度为约18至约21个碱基对。在其他实施方案中,双链区的长度为约19个碱基对。In some embodiments, the length of the double-stranded region is about 17 to about 23 base pairs. For example, a double-stranded region of suitable length is about 17 to about 22 base pairs, about 17 to about 21 base pairs, about 17 to about 20 base pairs, about 17 to about 19 base pairs, about 17 to about 18 base pairs, about 18 to about 23 base pairs, about 18 to about 22 base pairs, about 18 to about 21 base pairs, about 18 to about 20 base pairs, about 19 to 23 base pairs, about 19 to 22 base pairs, about 19 to 21 base pairs, about 20 to 23 base pairs, about 20 to 22 base pairs, or about 21 to 23 base pairs. In certain embodiments, the length of the double-stranded region is about 18 to about 21 base pairs. In other embodiments, the length of the double-stranded region is about 19 base pairs.
因此,在本发明的一些实施方式中,提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,该双链区的长度为约17至约23个碱基对,并且该反义链的长度不超过23个核苷酸并且包含选自选自SEQ ID NO:64至94以及与它们具有1至3个核苷酸差异的核苷酸序列的至少15个连续核苷酸。Therefore, in some embodiments of the present invention, a RNAi agent for inhibiting the expression of the ACVR2B gene is provided, which comprises a sense strand and an antisense strand that form a complementary double-stranded region, the length of the double-stranded region is about 17 to about 23 base pairs, and the length of the antisense strand does not exceed 23 nucleotides and comprises at least 15 consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1 to 3 nucleotide differences therefrom.
在本发明的一些实施方式中,提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,该双链区的长度为约18至约21个碱基对,并且该反义链的长度不超过23个核苷酸并且包含选自SEQ ID NO:64至94以及与它们具有1至3个核苷酸差异的核苷酸序列的至少15个连续核苷酸。In some embodiments of the present invention, a RNAi agent for inhibiting the expression of the ACVR2B gene is provided, which comprises a sense strand and an antisense strand that form a complementary double-stranded region, the length of the double-stranded region is about 18 to about 21 base pairs, and the length of the antisense strand does not exceed 23 nucleotides and comprises at least 15 consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1 to 3 nucleotide differences therefrom.
在本发明的一些实施方式中,提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,该双链区的长度为约19个碱基对,并且该反义链的长度不超过23个核苷酸并且包含选自选自SEQ ID NO:64至94以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸。In some embodiments of the present invention, a RNAi agent for inhibiting the expression of the ACVR2B gene is provided, which comprises a sense strand and an antisense strand that form a complementary double-stranded region, the length of the double-stranded region is about 19 base pairs, and the length of the antisense strand does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom.
在一些实施方式中,本发明的RNAi剂中的正义链和反义链的长度各自独立地为约17至约23个核苷酸,例如约18至约23个核苷酸、约19至约23个核苷酸、约20至约23个核苷酸、约21至约23核苷酸、约17至约22个核苷酸、约17至约21个核苷酸、约17至约20个核苷酸、约17至约19个核苷酸、约18至约22个核苷酸、约18至约21个核苷酸、约18至约20个核苷酸、约19至约22个核苷酸、约19至约21个核苷酸或约20至约22个核苷酸。在某些实施方案中,正义链和反义链的长度各自独立地为约17个、约18个、约19个、约20个、约21个、约22个、约23个核苷酸。In some embodiments, the length of the sense strand and the antisense strand in the RNAi agent of the invention is each independently about 17 to about 23 nucleotides, such as about 18 to about 23 nucleotides, about 19 to about 23 nucleotides, about 20 to about 23 nucleotides, about 21 to about 23 nucleotides, about 17 to about 22 nucleotides, about 17 to about 21 nucleotides, about 17 to about 20 nucleotides, about 17 to about 19 nucleotides, about 18 to about 22 nucleotides, about 18 to about 21 nucleotides, about 18 to about 20 nucleotides, about 19 to about 22 nucleotides, about 19 to about 21 nucleotides, or about 20 to about 22 nucleotides. In certain embodiments, the length of the sense strand and the antisense strand is each independently about 17, about 18, about 19, about 20, about 21, about 22, about 23 nucleotides.
在一些实施方案中,正义链和反义链具有相同的长度,但形成比链短的双链区,使得所述用于抑制ACVR2B基因表达的RNAi剂具有两个核苷酸突出。例如,在一个实施方案中,用于抑制ACVR2B基因表达的RNAi剂包括(i)长度分别为21个核苷酸的正义链和反义链,(ii)长度为19个碱基对的双链区,并且(iii)在正义链的3'端和反义链的3'端各具有1个未配对核苷酸的核苷酸突出。在另一个实施方案中,用于抑制ACVR2B基因表达的RNAi剂包括(i)长度分别为23个核苷酸的正义链和反义链,(ii)长度为21个碱基对的双链区,并且(iii)在正义链的3'端和反义链的3'端各具有1个未配对核苷酸的核苷酸突出。In some embodiments, the sense strand and the antisense strand have the same length, but form a double-stranded region that is shorter than the strand, so that the RNAi agent for inhibiting the expression of the ACVR2B gene has two nucleotide overhangs. For example, in one embodiment, the RNAi agent for inhibiting the expression of the ACVR2B gene includes (i) a sense strand and an antisense strand each having a length of 21 nucleotides, (ii) a double-stranded region of 19 base pairs in length, and (iii) a nucleotide overhang of 1 unpaired nucleotide at the 3' end of the sense strand and the 3' end of the antisense strand. In another embodiment, the RNAi agent for inhibiting the expression of the ACVR2B gene includes (i) a sense strand and an antisense strand each having a length of 23 nucleotides, (ii) a double-stranded region of 21 base pairs in length, and (iii) a nucleotide overhang of 1 unpaired nucleotide at the 3' end of the sense strand and the 3' end of the antisense strand.
在其他实施方案中,正义链和反义链具有相同的长度,并且在它们的整个长度上形成双链区,使得在双链分子的任一端都没有核苷酸突出。在一个这样的实施方案中,用于抑制ACVR2B基因表达的RNAi剂是平端的,并且包括(i)每一个长度为21个核苷酸的正义链和反义链,以及(ii)长度为21个碱基对的双链区。在另一个这样的实施方案中,用于抑制ACVR2B基因表达的RNAi剂是平端的,并且包括(i)每一个长度为23个核苷酸的正义链和反义链,以及(ii)长度为23个碱基对的双链区。在另一个这样的实施方案中,用于抑制ACVR2B基因表达的RNAi剂是平端的,并且包括(i)每一个长度为19个核苷酸的正义链和反义链,以及(ii)长度为19个碱基对的双链区。In other embodiments, the sense strand and the antisense strand have the same length and form a double-stranded region over their entire length, so that no nucleotides protrude at either end of the double-stranded molecule. In one such embodiment, the RNAi agent used to inhibit the expression of the ACVR2B gene is blunt-ended and includes (i) a sense strand and an antisense strand each having a length of 21 nucleotides, and (ii) a double-stranded region of 21 base pairs in length. In another such embodiment, the RNAi agent used to inhibit the expression of the ACVR2B gene is blunt-ended and includes (i) a sense strand and an antisense strand each having a length of 23 nucleotides, and (ii) a double-stranded region of 23 base pairs in length. In another such embodiment, the RNAi agent used to inhibit the expression of the ACVR2B gene is blunt-ended and includes (i) a sense strand and an antisense strand each having a length of 19 nucleotides, and (ii) a double-stranded region of 19 base pairs in length.
在其他实施方案中,正义链或反义链比另一条链长,并且这两条链形成长度等于短链长度的双链区,使得用于抑制ACVR2B基因表达的RNAi剂包括至少一个核苷酸突出。例如,在一些实施方案中,正义链比反义链长1至4个核苷酸,并且两条链形成的双链区等于反义链的长度,使得正义链形成具有1至4个未配对的核苷酸突出端。在另一些实施方案中,反义链比正义链长1至4个核苷酸,并且两条链形成的双链区等于正义链的长度,使得反义链形成具有1至4个未配对的核苷酸突出端。在一些实施方案中,核苷酸突出的长度为1、2、3或4个核苷酸。在一个特定的实施方案中,突出端包括2个核苷酸。在某些实施方案中,突出端包括单个核苷酸。In other embodiments, the sense strand or the antisense strand is longer than the other strand, and the two strands form a double-stranded region with a length equal to the length of the short strand, so that the RNAi agent for inhibiting the expression of the ACVR2B gene includes at least one nucleotide protrusion. For example, in some embodiments, the sense strand is 1 to 4 nucleotides longer than the antisense strand, and the double-stranded region formed by the two strands is equal to the length of the antisense strand, so that the sense strand forms an overhang with 1 to 4 unpaired nucleotides. In other embodiments, the antisense strand is 1 to 4 nucleotides longer than the sense strand, and the double-stranded region formed by the two strands is equal to the length of the sense strand, so that the antisense strand forms an overhang with 1 to 4 unpaired nucleotides. In some embodiments, the length of the nucleotide protrusion is 1, 2, 3 or 4 nucleotides. In a specific embodiment, the overhang includes 2 nucleotides. In certain embodiments, the overhang includes a single nucleotide.
突出的核苷酸可以是如本文所述的核糖核苷酸或修饰的核苷酸。在一些实施方案中,突出的核苷酸是2'-修饰的核苷酸(例如2'-氟修饰的核苷酸、2'-O-甲基修饰的核苷酸)或其组合。例如,在一个实施方案中,突出的核苷酸是脱氧核糖核苷酸,例如脱氧胸苷。在另一个实施方案中,突出的核苷酸是2'-O-甲基修饰的核苷酸、2'-氟修饰的核苷酸,2'-甲氧基乙基修饰的核苷酸、无碱基核苷酸、倒转的无碱基核苷酸、倒转的核苷酸或其组合。在其他实施方案中,突出包含5'-尿苷-尿苷-3'(5'-UU-3')二核苷酸。在这样的实施方案中,UU二核苷酸可以包括核糖核苷酸或修饰的核苷酸,例如2'-修饰的核苷酸。在其他实施方案中,突出包含5'-脱氧胸苷-脱氧胸苷-3'(5'-dTdT-3')二核苷酸。当反义链中存在核苷酸突出时,突出中的核苷酸可以与靶基因序列互补,与靶基因顺序形成错配,或包含一些其他序列(如UU、TT、AA、GG等)。The protruding nucleotides can be ribonucleotides or modified nucleotides as described herein. In some embodiments, the protruding nucleotides are 2'-modified nucleotides (e.g., 2'-fluoro modified nucleotides, 2'-O-methyl modified nucleotides) or combinations thereof. For example, in one embodiment, the protruding nucleotides are deoxyribonucleotides, such as deoxythymidine. In another embodiment, the protruding nucleotides are 2'-O-methyl modified nucleotides, 2'-fluoro modified nucleotides, 2'-methoxyethyl modified nucleotides, abasic nucleotides, inverted abasic nucleotides, inverted nucleotides or combinations thereof. In other embodiments, the protruding comprises 5'-uridine-uridine-3' (5'-UU-3') dinucleotides. In such embodiments, the UU dinucleotides can include ribonucleotides or modified nucleotides, such as 2'-modified nucleotides. In other embodiments, the protruding comprises 5'-deoxythymidine-deoxythymidine-3' (5'-dTdT-3') dinucleotides. When there is a nucleotide overhang in the antisense strand, the nucleotides in the overhang may be complementary to the target gene sequence, form a mismatch with the target gene sequence, or contain some other sequence (such as UU, TT, AA, GG, etc.).
核苷酸突出可以在一条或两条链的5'端或3'端。例如,在一个实施方案中,用于抑制ACVR2B基因表达的RNAi剂在反义链的5'端和3'端包含核苷酸突出。在另一个实施方案中,用于抑制ACVR2B基因表达的RNAi剂在正义链的5'端和3'端包含核苷酸突出。在一些实施方案中,用于抑制ACVR2B基因表达的RNAi剂包括在正义链的5'端和反义链的5'端的核苷酸突出。在其他实施方案中,用于抑制ACVR2B基因表达的RNAi剂在正义链的3'端和反义链的3'端包含核苷酸突出。在一些实施方案中,用于抑制ACVR2B基因表达的RNAi剂仅包括在正义链的5'端的核苷酸突出。在一些实施方案中,用于抑制ACVR2B基因表达的RNAi剂仅包括在正义链的3'端的核苷酸突出。在一些实施方案中,用于抑制ACVR2B基因表达的RNAi剂仅包括在反义链的3'端的核苷酸突出。在一些实施方案中,用于抑制ACVR2B基因表达的RNAi剂仅包括在反义链的5'端的核苷酸突出。在一些实施方案中,用于抑制ACVR2B基因表达的RNAi剂仅包括在正义链的5'端的核苷酸突出。The nucleotide overhang may be at the 5' end or 3' end of one or both strands. For example, in one embodiment, the RNAi agent for inhibiting the expression of the ACVR2B gene comprises a nucleotide overhang at the 5' end and the 3' end of the antisense strand. In another embodiment, the RNAi agent for inhibiting the expression of the ACVR2B gene comprises a nucleotide overhang at the 5' end and the 3' end of the sense strand. In some embodiments, the RNAi agent for inhibiting the expression of the ACVR2B gene includes a nucleotide overhang at the 5' end of the sense strand and the 5' end of the antisense strand. In other embodiments, the RNAi agent for inhibiting the expression of the ACVR2B gene includes a nucleotide overhang at the 3' end of the sense strand and the 3' end of the antisense strand. In some embodiments, the RNAi agent for inhibiting the expression of the ACVR2B gene includes only a nucleotide overhang at the 5' end of the sense strand. In some embodiments, the RNAi agent for inhibiting the expression of the ACVR2B gene includes only a nucleotide overhang at the 3' end of the sense strand. In some embodiments, the RNAi agent for inhibiting the expression of the ACVR2B gene includes only a nucleotide overhang at the 3' end of the sense strand. In some embodiments, the RNAi agent for inhibiting the expression of the ACVR2B gene includes only a nucleotide overhang at the 3' end of the antisense strand. In some embodiments, the RNAi agent used to inhibit the expression of the ACVR2B gene includes only nucleotide overhangs at the 5' end of the antisense strand. In some embodiments, the RNAi agent used to inhibit the expression of the ACVR2B gene includes only nucleotide overhangs at the 5' end of the sense strand.
用于抑制ACVR2B基因表达的RNAi剂可以在双链RNA分子的一端包括核苷酸突出,在另一端包括平端。“平端”意味着正义链和反义链在分子末端完全碱基配对,并且没有未配对的核苷酸延伸到双链区之外。在一些实施方案中,用于抑制ACVR2B基因表达的RNAi剂包括在正义链的3'端的核苷酸突出以及在正义链的5'端和反义链的3'末端的平端。在其他实施方案中,用于抑制ACVR2B基因表达的RNAi剂包括在反义链的3'端的核苷酸悬突以及在反义链的5'端和正义链的3'端的平端。The RNAi agent used to inhibit the expression of the ACVR2B gene can include a nucleotide overhang at one end of the double-stranded RNA molecule and a blunt end at the other end. "Blunt end" means that the sense strand and the antisense strand are completely base-paired at the ends of the molecule, and no unpaired nucleotides extend beyond the double-stranded region. In some embodiments, the RNAi agent used to inhibit the expression of the ACVR2B gene includes a nucleotide overhang at the 3' end of the sense strand and a blunt end at the 5' end of the sense strand and the 3' end of the antisense strand. In other embodiments, the RNAi agent used to inhibit the expression of the ACVR2B gene includes a nucleotide overhang at the 3' end of the antisense strand and a blunt end at the 5' end of the antisense strand and the 3' end of the sense strand.
具体地,例如,在一个实施方案中,用于抑制ACVR2B基因表达的RNAi剂包括(i)长度为19个核苷酸的正义链,(ii)长度为21个核苷酸的反义链,两条链形成长度等于正义链的链长度的双链区。在另一个实施方案中,用于抑制ACVR2B基因表达的RNAi剂包含(i)长度为21个核苷酸的正义链,(ii)长度为23个核苷酸的反义链,两条链形成长度等于正义链的链长度的双链区。Specifically, for example, in one embodiment, the RNAi agent for inhibiting the expression of the ACVR2B gene comprises (i) a sense strand of 19 nucleotides in length, (ii) an antisense strand of 21 nucleotides in length, and the two strands form a double-stranded region with a length equal to the length of the sense strand. In another embodiment, the RNAi agent for inhibiting the expression of the ACVR2B gene comprises (i) a sense strand of 21 nucleotides in length, (ii) an antisense strand of 23 nucleotides in length, and the two strands form a double-stranded region with a length equal to the length of the sense strand.
在一些实施方式中,提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,该反义链的长度不超过23个核苷酸并且包含选自SEQ ID NO:64至94以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸,并且所述RNAi剂包括一个突出端和一个平末端,所述突出端优选具有2个未配对的核苷酸。In some embodiments, a RNAi agent for inhibiting the expression of the ACVR2B gene in a cell is provided, comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain having a length of no more than 23 nucleotides and comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, and the RNAi agent includes an overhang and a blunt end, and the overhang preferably has 2 unpaired nucleotides.
在一些实施方式中,提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,该反义链的长度不超过23个核苷酸并且包含选自SEQ ID NO:64至94以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸,并且所述RNAi剂包括一个突出端和一个平末端,所述突出端优选具有2个未配对的核苷酸,其中所述突出端形成在反义链的3'端,所述平末端形成在正义链的3'端和反义链的5'端。In some embodiments, a RNAi agent for inhibiting the expression of ACVR2B gene in a cell is provided, comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain having a length of no more than 23 nucleotides and comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, and the RNAi agent includes an overhang and a blunt end, the overhang preferably having 2 unpaired nucleotides, wherein the overhang is formed at the 3' end of the antisense chain, and the blunt end is formed at the 3' end of the sense chain and the 5' end of the antisense chain.
在一些实施方式中,提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,所述双链区的长度为19个碱基对,该反义链的长度不超过23个核苷酸并且包含选自SEQ ID NO:64至94以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸,并且所述RNAi剂包括一个突出端和一个平末端,所述突出端优选具有2个未配对的核苷酸,其中所述突出端形成在反义链的3'端,所述平末端形成在正义链的3'端和反义链的5'端。In some embodiments, a RNAi agent for inhibiting the expression of ACVR2B gene in a cell is provided, comprising a sense strand and an antisense strand forming a double-stranded region, the length of the double-stranded region is 19 base pairs, the length of the antisense strand does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, and the RNAi agent includes an overhang and a blunt end, the overhang preferably having 2 unpaired nucleotides, wherein the overhang is formed at the 3' end of the antisense strand, and the blunt end is formed at the 3' end of the sense strand and the 5' end of the antisense strand.
在一些实施方式中,提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,所述双链区的长度为19个碱基对,该反义链的长度不超过23个核苷酸并且包含选自SEQ ID NO:64至94以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸,该正义链的长度为19至21个核苷酸,并且所述RNAi剂包括一个突出端和一个平末端,所述突出端优选具有2个未配对的核苷酸,其中所述突出端形成在反义链的3'端,所述平末端形成在正义链的3'端和反义链的5'端。In some embodiments, a RNAi agent for inhibiting the expression of ACVR2B gene in a cell is provided, comprising a sense strand and an antisense strand forming a double-stranded region, the length of the double-stranded region is 19 base pairs, the length of the antisense strand does not exceed 23 nucleotides and comprises at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, the length of the sense strand is 19 to 21 nucleotides, and the RNAi agent includes an overhang and a blunt end, the overhang preferably having 2 unpaired nucleotides, wherein the overhang is formed at the 3' end of the antisense strand, and the blunt end is formed at the 3' end of the sense strand and the 5' end of the antisense strand.
在一些实施方式中,提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,所述双链区的长度为19个碱基对,该反义链的长度为21个核苷酸并且为选自SEQ ID NO:64至94以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸,该正义链的长度为19个核苷酸,并且所述RNAi剂包括一个突出端和一个平末端,所述突出端优选具有2个未配对的核苷酸,其中所述突出端形成在反义链的3'端,所述平末端形成在正义链的3'端和反义链的5'端。In some embodiments, a RNAi agent for inhibiting the expression of ACVR2B gene in a cell is provided, comprising a sense strand and an antisense strand forming a double-stranded region, the double-stranded region having a length of 19 base pairs, the antisense strand having a length of 21 nucleotides and being at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, the sense strand having a length of 19 nucleotides, and the RNAi agent including an overhang and a blunt end, the overhang preferably having 2 unpaired nucleotides, wherein the overhang is formed at the 3' end of the antisense strand, and the blunt end is formed at the 3' end of the sense strand and the 5' end of the antisense strand.
在一些实施方式中,本发明提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,所述双链区的长度为19个碱基对,该反义链的长度为21个核苷酸并且为选自SEQ ID NO:64至94的任一核苷酸序列,该正义链的长度为19个核苷酸,并且所述RNAi剂包括一个突出端和一个平末端,所述突出端优选具有2个未配对的核苷酸,其中所述突出端形成在反义链的3'端,所述平末端形成在正义链的3'端和反义链的5'端。In some embodiments, the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense chain and an antisense chain forming a double-stranded region, wherein the double-stranded region is 19 base pairs in length, the antisense chain is 21 nucleotides in length and is any one nucleotide sequence selected from SEQ ID NO: 64 to 94, the sense chain is 19 nucleotides in length, and the RNAi agent includes an overhang and a blunt end, wherein the overhang preferably has 2 unpaired nucleotides, wherein the overhang is formed at the 3' end of the antisense chain, and the blunt end is formed at the 3' end of the sense chain and the 5' end of the antisense chain.
在优选的实施方式中,本发明提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,该反义链包含选自SEQ ID NO:64至94以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸,所述正义链包含选自SEQ ID NO:33至63的任一核苷酸序列以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18或19个)连续核苷酸。In a preferred embodiment, the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, and the sense chain comprising at least 15 (e.g., 15, 16, 17, 18 or 19) consecutive nucleotides selected from any nucleotide sequence selected from SEQ ID NO: 33 to 63 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom.
在优选的实施方式中,本发明提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,该反义链具有不超过23个核苷酸并且包含选自SEQ ID NO:64至94以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18、19、20或21个)连续核苷酸,所述正义链具有不超过21个核苷酸并且包含选自SEQ ID NO:33至63的任一核苷酸序列以及与它们具有1、2或3个核苷酸差异的核苷酸序列的至少15个(例如15、16、17、18或19个)连续核苷酸。In a preferred embodiment, the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain having no more than 23 nucleotides and comprising at least 15 (e.g., 15, 16, 17, 18, 19, 20 or 21) consecutive nucleotides selected from SEQ ID NO: 64 to 94 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom, and the sense chain having no more than 21 nucleotides and comprising at least 15 (e.g., 15, 16, 17, 18 or 19) consecutive nucleotides selected from any nucleotide sequence selected from SEQ ID NO: 33 to 63 and nucleotide sequences having 1, 2 or 3 nucleotide differences therefrom.
在优选的实施方式中,本发明提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,该反义链具有不超过23个核苷酸并且包含选自SEQ ID NO:64至94任一的核苷酸序列,所述正义链具有不超过21个核苷酸并且包含选自SEQ ID NO:33至63的任一核苷酸序列。In a preferred embodiment, the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense chain and an antisense chain forming a double-stranded region, the antisense chain having no more than 23 nucleotides and comprising a nucleotide sequence selected from any one of SEQ ID NO: 64 to 94, and the sense chain having no more than 21 nucleotides and comprising any one of nucleotide sequences selected from SEQ ID NO: 33 to 63.
在优选的实施方式中,本发明提供用于抑制细胞中ACVR2B基因表达的RNAi剂,包含形成双链区的正义链和反义链,其中:In a preferred embodiment, the present invention provides an RNAi agent for inhibiting the expression of ACVR2B gene in a cell, comprising a sense strand and an antisense strand forming a double-stranded region, wherein:
正义链包含或为SEQ ID NO:33所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:64所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:33, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:64, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:34所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:65所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:34, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:65, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:35所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:66所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:35, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:66, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:36所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:67所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:36, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:67, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:37所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:68所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:37, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:68, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:38所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:69所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:38, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:69, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:39所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:70所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:39, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:70, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:40所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:71所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:40, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:71, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:41所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:72所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:41, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:72, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:42所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:73所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:42, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:73, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:43所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:74所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:43, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:74, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:44所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:75所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:44, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:75, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:45所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:76所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:45, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:76, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:46所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:77所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:46, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:77, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:47所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:78所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:47, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:78, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:48所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:79所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:48, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:79, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:49所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:80所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:49, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:80, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:50所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:81所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:50, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:81, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:51所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:82所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:51, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:82, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:52所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:83所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:52, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:83, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:53所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:84所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:53, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:84, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:54所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:85所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:54, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:85, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:55所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:86所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:55, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:86, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:56所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:87所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:56, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:87, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:57所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:88所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:57, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:88, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:58所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:89所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:58, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:89, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:59所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:90所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:59, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:90, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:60所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:91所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:60, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:91, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:61所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:92所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:61, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:92, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:62所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:93所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列;The sense strand comprises or is the sequence shown in SEQ ID NO:62, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand comprises or is the sequence shown in SEQ ID NO:93, or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom;
正义链包含或为SEQ ID NO:63所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列,并且反义链包含或为SEQ ID NO:94所示的序列或与其具有1、2或3个核苷酸差异的核苷酸序列。The positive strand contains or is the sequence shown in SEQ ID NO:63 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom, and the antisense strand contains or is the sequence shown in SEQ ID NO:94 or a nucleotide sequence having 1, 2 or 3 nucleotide differences therefrom.
在优选的实施方式中,本发明提供用于抑制ACVR2B基因表达的RNAi剂,其包含形成互补的双链区的正义链和反义链,其中正义链和反义链配对以形成如本文所述的双链体6102、6103、6104、6105、6106、6107、6108、6109、6112、6113、6115、6116、6117、6119、6120、6121、6122、6123、6124、6125、6127、6128、6129、6130、6131、6132、
6134、6135、6137、6138或6140中的任何一个。In a preferred embodiment, the present invention provides a RNAi agent for inhibiting the expression of the ACVR2B gene, which comprises a sense strand and an antisense strand that form complementary double-stranded regions, wherein the sense strand and the antisense strand pair to form a duplex 6102, 6103, 6104, 6105, 6106, 6107, 6108, 6109, 6112, 6113, 6115, 6116, 6117, 6119, 6120, 6121, 6122, 6123, 6124, 6125, 6127, 6128, 6129, 6130, 6131, 6132,
Any one of 6134, 6135, 6137, 6138 or 6140.
核苷酸经修饰的RNAi剂Nucleotide-modified RNAi agents
对于在“用于抑制ACVR2B基因表达的RNAi剂”的部分描述的任何一个本发明的RNAi剂的实施方式,所述RNAi剂的正义链和/或反义链可包含至少一个经修饰的核苷酸。For any one of the embodiments of the RNAi agent of the present invention described in the section "RNAi agent for inhibiting ACVR2B gene expression", the sense strand and/or antisense strand of the RNAi agent may contain at least one modified nucleotide.
在一些实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链分别包含至少一个经修饰的核苷酸。In some embodiments, the sense strand and the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention each contain at least one modified nucleotide.
在一些实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链的每个核苷酸都被修饰。In some embodiments, each nucleotide of the sense strand and the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified.
在以上任一实施方式中,所述经修饰的核苷酸独立地选自2'-脱氧-胸腺嘧啶(dT)核苷酸、2'-O-甲基修饰的核苷酸(2'-OMe)、2'-氟修饰的核苷酸(2'-F)、2'-脱氧修饰的核苷酸、锁核酸(LNA)、开环核酸(UNA)、桥核酸(BNA)、乙二醇核酸(GNA)、阿苏糖核酸(TNA)、构型限制性核苷酸、限制性乙基核苷酸(cEt)、2'-氨基-修饰的核苷酸、2'-O-烯丙基-修饰的核苷酸、2'-C-烷基-修饰的核苷酸、2'-O-甲氧基乙基修饰的核苷酸(2'-MOE)、无碱基核苷酸、倒转的无碱基核苷酸、倒转的核苷酸、吗啉基核苷酸(MOP)、氨基磷酸酯(PN)、四氢吡喃修饰的核苷酸(THP)、1,5-脱水己糖醇修饰(HNA)的核苷酸、环己烯基修饰的核苷酸、包含硫代磷酸酯基的核苷酸(PS)、包含甲基膦酸酯基的核苷酸、包含5'-磷酸酯的核苷酸、包含5'-磷酸酯模拟物的核苷酸、阳离子脂质共价连接的核苷酸、包含5'-乙烯基膦酸酯的核苷酸(5'-VP)及其组合。In any of the above embodiments, the modified nucleotides are independently selected from 2'-deoxy-thymine (dT) nucleotides, 2'-O-methyl modified nucleotides (2'-OMe), 2'-fluorine modified nucleotides (2'-F), 2'-deoxy modified nucleotides, locked nucleic acids (LNA), open ring nucleic acids (UNA), bridge nucleic acids (BNA), glycol nucleic acids (GNA), assueose nucleic acids (TNA), conformationally restricted nucleotides, restricted ethyl nucleotides (cEt), 2'-amino-modified nucleotides, 2'-O-allyl-modified nucleotides, 2'-C-alkyl-modified nucleotides, 2'-O -Methoxyethyl modified nucleotides (2'-MOE), abasic nucleotides, inverted abasic nucleotides, inverted nucleotides, morpholino nucleotides (MOP), phosphoramidates (PN), tetrahydropyran modified nucleotides (THP), 1,5-anhydrohexitol modified (HNA) nucleotides, cyclohexenyl modified nucleotides, nucleotides containing thiophosphate groups (PS), nucleotides containing methylphosphonate groups, nucleotides containing 5'-phosphate esters, nucleotides containing 5'-phosphate mimetics, nucleotides covalently linked to cationic lipids, nucleotides containing 5'-vinylphosphonate (5'-VP), and combinations thereof.
在优选的实施方式中,所述经修饰的核苷酸独立地选自2'-O-甲基修饰的核苷酸、2'-氟修饰的核苷酸、包含硫代磷酸酯键核苷酸间连接的核苷酸及其组合。在优选的实施方式中,所述RNAi剂的正义链和/或反义链的每个核苷酸都被修饰。在优选的实施方式中,所述RNAi剂的正义链和/或反义链的每个核苷酸都被修饰,并且所述经修饰的核苷酸独立地选自2'-O-甲基修饰的核苷酸、2'-氟修饰的核苷酸、包含硫代磷酸酯键核苷酸间连接的核苷酸及其组合。In a preferred embodiment, the modified nucleotides are independently selected from 2'-O-methyl modified nucleotides, 2'-fluoro modified nucleotides, nucleotides comprising thiophosphate bond internucleotide connections, and combinations thereof. In a preferred embodiment, each nucleotide of the sense strand and/or antisense strand of the RNAi agent is modified. In a preferred embodiment, each nucleotide of the sense strand and/or antisense strand of the RNAi agent is modified, and the modified nucleotides are independently selected from 2'-O-methyl modified nucleotides, 2'-fluoro modified nucleotides, nucleotides comprising thiophosphate bond internucleotide connections, and combinations thereof.
在优选的实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链的每个核苷酸都被修饰,并且所述修饰方式选自STC(Alnylam)、ESC(Alnylam)、Advanced ESC(Alnylam)、ESC+(Alnylam)、AD1-3(Arrowhead)、AD5(Arrowhead)和GalXC(Dicerna)中的一个(参见例如Hu B,Zhong L,Weng Y,et al.Therapeutic siRNA:state of the art.Signal Transduct Target Ther.2020;5(1):101)。In a preferred embodiment, each nucleotide of the sense chain and the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and the modification method is selected from one of STC (Alnylam), ESC (Alnylam), Advanced ESC (Alnylam), ESC+ (Alnylam), AD1-3 (Arrowhead), AD5 (Arrowhead) and GalXC (Dicerna) (see, for example, Hu B, Zhong L, Weng Y, et al. Therapeutic siRNA: state of the art. Signal Transduct Target Ther. 2020; 5(1): 101).
在优选的实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的反义链的5'-末端核苷酸含有磷酸或磷酸类似物修饰,优选为5'-VP(参见Parmar R,Willoughby JL,Liu J,et al.5'-(E)-Vinylphosphonate:A Stable Phosphate Mimic Can Improve the RNAi Activity of siRNA-GalNAc Conjugates.Chembiochem.2016;17(11):985-989).In a preferred embodiment, the 5'-terminal nucleotide of the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention contains a phosphate or phosphate analog modification, preferably 5'-VP (see Parmar R, Willoughby JL, Liu J, et al. 5'-(E)-Vinylphosphonate: A Stable Phosphate Mimic Can Improve the RNAi Activity of siRNA-GalNAc Conjugates. Chembiochem. 2016; 17(11): 985-989).
在一些实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。In some embodiments, each nucleotide of the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides.
在一些实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7、12和14位的核苷酸为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。In some embodiments, each nucleotide of the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7, 12 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides.
在一些实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7、14和16位的核苷酸为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。In some embodiments, each nucleotide of the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7, 14 and 16 of the antisense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides.
一些实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸,并且所述反义链具有至少一个硫代磷酸酯键核苷酸间连接。在优选的实施方式中,所述硫代磷酸酯键核苷酸间连接存在于以下中的一个或多个:所述反义链的5'端第1个核苷酸和第2个核苷酸之间;所述反义链的5'端第2个核苷酸和第3个核苷酸之间;所述反义链的3'端第1个核苷酸和第2个核苷酸之间;以及所述反义链的3'端第2个核苷酸和第3个核苷酸之间。在优选的实施方式中,所述硫代磷酸酯键核苷酸间连接存在于所述反义链的5'端第1个核苷酸和第2个核苷酸之间;所述反义链的5'端第2个核苷酸和第3个核苷酸之间;所述反义链的3'端第1个核苷酸和第2个核苷酸之间;以及所述反义链的3'端第2个核苷酸和第3个核苷酸之间。In some embodiments, each nucleotide of the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at the 2nd, 5th, 7th and 14th positions of the antisense strand are 2'-fluoro-modified nucleotides, and one of the nucleotides at the 12th and 16th positions of the antisense strand is a 2'-fluoro-modified nucleotide, the nucleotides at the remaining positions of the antisense strand are all 2'-methoxy-modified nucleotides, and the antisense strand has at least one phosphorothioate bond internucleotide connection. In a preferred embodiment, the phosphorothioate bond internucleotide connection exists in one or more of the following: between the first nucleotide and the second nucleotide at the 5' end of the antisense strand; between the second nucleotide and the third nucleotide at the 5' end of the antisense strand; between the first nucleotide and the second nucleotide at the 3' end of the antisense strand; and between the second nucleotide and the third nucleotide at the 3' end of the antisense strand. In a preferred embodiment, the phosphorothioate internucleotide linkage exists between the first and second nucleotides at the 5' end of the antisense strand; between the second and third nucleotides at the 5' end of the antisense strand; between the first and second nucleotides at the 3' end of the antisense strand; and between the second and third nucleotides at the 3' end of the antisense strand.
在一些实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸;按5'端至3'端方向,所述正义链的第7和9位的核苷酸为2'-氟代修饰的核苷酸,所述正义链的第5、8和11位的核苷酸中的一个或两个为2'-氟代修饰的核苷酸,所述正义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。In some embodiments, each nucleotide of the sense strand and antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense strand are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense strand is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense strand are all 2'-methoxy-modified nucleotides; in the direction from the 5' end to the 3' end, the nucleotides at positions 7 and 9 of the sense strand are 2'-fluoro-modified nucleotides, one or two of the nucleotides at positions 5, 8 and 11 of the sense strand are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense strand are all 2'-methoxy-modified nucleotides.
例如,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸;按5'端至3'端方向,所述正义链的第5、7、8和9位的核苷酸为2'-氟代修饰的核苷酸,所述正义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。For example, each nucleotide of the sense chain and the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides; in the direction from the 5' end to the 3' end, the nucleotides at positions 5, 7, 8 and 9 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
例如,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸;按5'端至3'端方向,所述正义链的第7、8和9位的核苷酸为2'-氟代修饰的核苷酸,所述正义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。For example, each nucleotide of the sense chain and antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides; in the direction from the 5' end to the 3' end, the nucleotides at positions 7, 8 and 9 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
例如,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸;按5'端至3'端方向,所述正义链的第5、7和9位的核苷酸为2'-氟代修饰的核苷酸,所述正义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。For example, each nucleotide of the sense chain and antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides; in the direction from the 5' end to the 3' end, the nucleotides at positions 5, 7 and 9 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
例如,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸;按5'端至3'端方向,所述正义链的第7、9和11位的核苷酸为2'-氟代修饰的核苷酸,所述正义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸。For example, each nucleotide of the sense chain and the antisense chain of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense chain are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense chain is a 2'-fluoro-modified nucleotide, and the nucleotides at the remaining positions of the antisense chain are all 2'-methoxy-modified nucleotides; in the direction from the 5' end to the 3' end, the nucleotides at positions 7, 9 and 11 of the sense chain are 2'-fluoro-modified nucleotides, and the nucleotides at the remaining positions of the sense chain are all 2'-methoxy-modified nucleotides.
在优选的实施方式中,所述正义链具有至少一个硫代磷酸酯键核苷酸间连接。在优选的实施方式中,所述硫代磷酸酯键核苷酸间连接存在于以下位置中的一个或多个:(i)所述正义链的5'端第1个核苷酸和第2个核苷酸之间;(ii)所述正义链的5'端第2个核苷酸和第3个核苷酸之间;(iii)所述正义链的3'端第1个核苷酸和第2个核苷酸之间;以及(iv)所述正义链的3'端第2个核苷酸和第3个核苷酸之间。在更优选的实施方式中,所述硫代磷酸酯键核苷酸间连接存在于所述正义链的5'端第1个核苷酸和第2个核苷酸之间;以及所述正义链的5'端第2个核苷酸和第3个核苷酸之间。在更优选的实施方式中,所述硫代磷酸酯键核苷酸间连接存在于所述正义链的5'端第1个核苷酸和第2个核苷酸之间;所述正义链的5'端第2个核苷酸和第3个核苷酸之间;所述正义链的3'端第1个核苷酸和第2个核苷酸之间;以及所述正义链的3'端第2个核苷酸和第3个核苷酸之间。In a preferred embodiment, the sense strand has at least one phosphorothioate internucleotide connection. In a preferred embodiment, the phosphorothioate internucleotide connection is present in one or more of the following positions: (i) between the first nucleotide and the second nucleotide at the 5' end of the sense strand; (ii) between the second nucleotide and the third nucleotide at the 5' end of the sense strand; (iii) between the first nucleotide and the second nucleotide at the 3' end of the sense strand; and (iv) between the second nucleotide and the third nucleotide at the 3' end of the sense strand. In a more preferred embodiment, the phosphorothioate internucleotide connection is present between the first nucleotide and the second nucleotide at the 5' end of the sense strand; and between the second nucleotide and the third nucleotide at the 5' end of the sense strand. In a more preferred embodiment, the phosphorothioate internucleotide linkage exists between the first and second nucleotides at the 5' end of the sense strand; between the second and third nucleotides at the 5' end of the sense strand; between the first and second nucleotides at the 3' end of the sense strand; and between the second and third nucleotides at the 3' end of the sense strand.
在优选的实施方式中,所述反义链具有至少一个硫代磷酸酯键核苷酸间连接。优选地,所述硫代磷酸酯键核苷酸间连接存在于以下中的一个或多个:所述反义链的5'端第1个核苷酸和第2个核苷酸之间;所述反义链的5'端第2个核苷酸和第3个核苷酸之间;所述反义链的3'端第1个核苷酸和第2个核苷酸之间;以及所述反义链的3'端第2个核苷酸和第3个核苷酸之间。In a preferred embodiment, the antisense strand has at least one phosphorothioate internucleotide linkage. Preferably, the phosphorothioate internucleotide linkage is present in one or more of the following: between the first nucleotide and the second nucleotide at the 5' end of the antisense strand; between the second nucleotide and the third nucleotide at the 5' end of the antisense strand; between the first nucleotide and the second nucleotide at the 3' end of the antisense strand; and between the second nucleotide and the third nucleotide at the 3' end of the antisense strand.
因此,在一些实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸,并且所述反义链具有至少一个硫代磷酸酯键核苷酸间连接,所述硫代磷酸酯键核苷酸间连接存在于以下中的一个或多个:所述反义链的5'端第1个核苷酸和第2个核苷酸之间;所述反义链的5'端第2个核苷酸和第3个核苷酸之间;所述反义链的3'端第1个核苷酸和第2个核苷酸之间;以及所述反义链的3'端第2个核苷酸和第3个核苷酸之间;按5'端至3'端方向,所述正义链的第7和9位的核苷酸为2'-氟代修饰的核苷酸,所述正义链的第5、8和11位的核苷酸中的一个或两个为2'-氟代修饰的核苷酸,所述正义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸,并且所述正义链具有至少一个硫代磷酸酯键核苷酸间连接,并且所述硫代磷酸酯键核苷酸间连接存在于所述正义链的5'端第1个核苷酸和第2个核苷酸之间和/或所述正义链的5'端第2个核苷酸和第3个核苷酸之间。Therefore, in some embodiments, each nucleotide of the sense strand and the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and in the direction from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense strand are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense strand is a 2'-fluoro-modified nucleotide, the nucleotides at the remaining positions of the antisense strand are all 2'-methoxy-modified nucleotides, and the antisense strand has at least one phosphorothioate bond internucleotide connection, and the phosphorothioate bond internucleotide connection exists in one or more of the following: between the first nucleotide and the second nucleotide at the 5' end of the antisense strand; between the second nucleotide and the first nucleotide at the 5' end of the antisense strand; 3 nucleotides; between the 1st nucleotide and the 2nd nucleotide at the 3' end of the antisense strand; and between the 2nd nucleotide and the 3rd nucleotide at the 3' end of the antisense strand; in the direction from 5' to 3', the 7th and 9th nucleotides of the sense strand are 2'-fluoro-modified nucleotides, one or two of the 5th, 8th and 11th nucleotides of the sense strand are 2'-fluoro-modified nucleotides, the nucleotides at the remaining positions of the sense strand are 2'-methoxy-modified nucleotides, and the sense strand has at least one phosphorothioate bond internucleotide connection, and the phosphorothioate bond internucleotide connection exists between the 1st nucleotide and the 2nd nucleotide at the 5' end of the sense strand and/or between the 2nd nucleotide and the 3rd nucleotide at the 5' end of the sense strand.
在一些实施方式中,本发明提供的用于抑制ACVR2B基因表达的RNAi剂的正义链和反义链的每个核苷酸都被修饰,并且按5'端至3'端方向,所述反义链的第2、5、7和14位的核苷酸为2'-氟代修饰的核苷酸,并且所述反义链的第12和16位的核苷酸中的一个为2'-氟代修饰的核苷酸,所述反义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸,并且所述反义链具有至少一个硫代磷酸酯键核苷酸间连接,所述硫代磷酸酯键核苷酸间连接存在于:所述反义链的5'端第1个核苷酸和第2个核苷酸之间、所述反义链的5'端第2个核苷酸和第3个核苷酸之间、所述反义链的3'端第1个核苷酸和第2个核苷酸之间、以及所述反义链的3'端第2个核苷酸和第3个核苷酸之间;按5'端至3'端方向,所述正义链的第7和9位的核苷酸为2'-氟代修饰的核苷酸,所述正义链的第5、8和11位的核苷酸中的一个或两个为2'-氟代修饰的核苷酸,所述正义链的其余位置的核苷酸均为2'-甲氧基修饰的核苷酸,并且所述正义链具有至少一个硫代磷酸酯键核苷酸间连接,并且所述硫代磷酸酯键核苷酸间连接存在于所述正义链的5'端第1个核苷酸和第2个核苷酸之间和所述正义链的5'端第2个核苷酸和第3个核苷酸之间。In some embodiments, each nucleotide of the sense strand and the antisense strand of the RNAi agent for inhibiting the expression of the ACVR2B gene provided by the present invention is modified, and from the 5' end to the 3' end, the nucleotides at positions 2, 5, 7 and 14 of the antisense strand are 2'-fluoro-modified nucleotides, and one of the nucleotides at positions 12 and 16 of the antisense strand is a 2'-fluoro-modified nucleotide, the nucleotides at the remaining positions of the antisense strand are all 2'-methoxy-modified nucleotides, and the antisense strand has at least one phosphorothioate bond internucleotide connection, and the phosphorothioate bond internucleotide connection exists between: the first nucleotide and the second nucleotide at the 5' end of the antisense strand, and between the second nucleotide and the third nucleotide at the 5' end of the antisense strand. , between the 1st nucleotide and the 2nd nucleotide at the 3' end of the antisense strand, and between the 2nd nucleotide and the 3rd nucleotide at the 3' end of the antisense strand; in the direction from 5' to 3', the 7th and 9th nucleotides of the sense strand are 2'-fluoro-modified nucleotides, one or two of the 5th, 8th and 11th nucleotides of the sense strand are 2'-fluoro-modified nucleotides, the nucleotides at the remaining positions of the sense strand are all 2'-methoxy-modified nucleotides, and the sense strand has at least one phosphorothioate bond internucleotide connection, and the phosphorothioate bond internucleotide connection exists between the 1st nucleotide and the 2nd nucleotide at the 5' end of the sense strand and between the 2nd nucleotide and the 3rd nucleotide at the 5' end of the sense strand.
连接有配体的寡核苷酸和RNAi剂Ligand-linked oligonucleotides and RNAi agents
对于在以上“用于抑制ACVR2B基因表达的反义寡核苷酸”、“用于抑制ACVR2B基因表达的RNAi剂”和“核苷酸经修饰的RNAi剂”的部分描述的任何一个本发明的反义寡核苷酸或RNAi剂的实施方式,所述反义寡核苷酸或RNAi剂可包含配体。如本文所用,“配体”是指能够与另一种化合物或分子直接或间接相互作用的任何化合物或分子。配体与另一种化合物或分子的相互作用可能引发生物反应(例如启动信号转导级联反应、诱导受体介导的内吞作用),也可能只是一种物理连接。配体可以改变所附接的双链RNA分子的一个或多个性质,例如RNA分子的药效学、药代动力学、结合、吸收、细胞分布、细胞摄取、电荷和/或清除。For any of the embodiments of the antisense oligonucleotide or RNAi agent of the present invention described in the above sections of "Antisense oligonucleotides for inhibiting ACVR2B gene expression", "RNAi agents for inhibiting ACVR2B gene expression" and "Nucleotide-modified RNAi agents", the antisense oligonucleotide or RNAi agent may contain a ligand. As used herein, "ligand" refers to any compound or molecule that is capable of interacting directly or indirectly with another compound or molecule. The interaction of a ligand with another compound or molecule may trigger a biological response (e.g., initiating a signal transduction cascade, inducing receptor-mediated endocytosis), or it may be just a physical connection. The ligand may change one or more properties of the attached double-stranded RNA molecule, such as the pharmacodynamics, pharmacokinetics, binding, absorption, cellular distribution, cellular uptake, charge and/or clearance of the RNA molecule.
ACVR2B基因在多种细胞和组织中表达。因此,在某些实施方案中,希望将本发明的反义寡核苷酸或RNAi剂特异性递送至肝细胞。因此,在某些实施方案中,配体使用如下更详细描述的各种方法靶向特异性递送反义寡核苷酸或RNAi剂至肝细胞。在某些实施方案中,反义寡核苷酸或RNAi剂用结合表面表达的去唾液酸糖蛋白受体(ASGR)或其组分(例如ASGR1、ASGR2)的配体靶向肝细胞。The ACVR2B gene is expressed in a variety of cells and tissues. Therefore, in certain embodiments, it is desirable to specifically deliver the antisense oligonucleotides or RNAi agents of the present invention to hepatocytes. Therefore, in certain embodiments, the ligands are targeted to specifically deliver antisense oligonucleotides or RNAi agents to hepatocytes using various methods described in more detail below. In certain embodiments, the antisense oligonucleotides or RNAi agents are targeted to hepatocytes with ligands that bind to surface expressed asialoglycoprotein receptors (ASGR) or components thereof (e.g., ASGR1, ASGR2).
在一些实施方案中,反义寡核苷酸或RNAi剂可以通过使用与肝细胞表面上表达的蛋白质结合或相互作用的配体而特异性靶向肝脏。例如,在某些实施方案中,配体可以包括抗原结合蛋白(例如抗体或其结合片段(例如Fab、scFv)),其特异性结合在肝细胞上表达的受体,例如去唾液酸糖蛋白受体和LDL受体。在一个特定的实施方案中,配体包括特异性结合ASGR1和/或ASGR2的抗体或其结合片段。在另一个实施方案中,配体包括特异性结合ASGR1和/或ASGR2的抗体的Fab片段。在另一个实施方案中,配体包括特异性结合ASGR1和/或ASGR2的抗体的单链可变抗体片段(scFv片段)。可作为将本发明的反义寡核苷酸或RNAi剂靶向肝脏的配体的特异性结合ASGR1的示例性抗体及其结合片段描述于WO 2017/058944中,其通过引用整体并入本文。特异性结合ASGR1、LDL受体或其他适合用作本发明RNAi剂中配体的肝表面表达蛋白的其他抗体或其结合片段从商业来源购得。In some embodiments, antisense oligonucleotides or RNAi agents can be specifically targeted to the liver by using ligands that bind to or interact with proteins expressed on the surface of hepatocytes. For example, in certain embodiments, the ligand may include an antigen binding protein (e.g., an antibody or a binding fragment thereof (e.g., Fab, scFv)) that specifically binds to receptors expressed on hepatocytes, such as asialoglycoprotein receptors and LDL receptors. In a particular embodiment, the ligand includes an antibody or a binding fragment thereof that specifically binds to ASGR1 and/or ASGR2. In another embodiment, the ligand includes a Fab fragment of an antibody that specifically binds to ASGR1 and/or ASGR2. In another embodiment, the ligand includes a single-chain variable antibody fragment (scFv fragment) of an antibody that specifically binds to ASGR1 and/or ASGR2. Exemplary antibodies and binding fragments thereof that specifically bind to ASGR1 that can be used as ligands for targeting the antisense oligonucleotides or RNAi agents of the present invention to the liver are described in WO 2017/058944, which is incorporated herein by reference in its entirety. Other antibodies or binding fragments thereof that specifically bind to ASGR1, LDL receptor, or other liver surface expressed proteins suitable for use as ligands in the RNAi agents of the invention are purchased from commercial sources.
在一些实施方式中,当用于肝外递送时,包括但不限于,中枢神经系统(CNS)(例如脑、脊柱或眼)、肌肉、肺或脂肪时,反义寡核苷酸或RNAi剂可包含一个或多个亲脂基团,所述亲脂基团缀合至寡核苷酸的一个或多个位置或RNAi剂反义链和/或正义链的一个或多个位置。例如,亲脂基团可经由核碱基、糖部分或核苷间键而连接至反义寡核苷酸或RNAi剂的反义链和/或正义链。在一些实施例中,具有亚磷酰胺基团的亲脂基团在最后的合成循环中与正义链或反义链的3'端或5'端偶联。在一些实施例中,亲脂基团的辛醇-水分配系数超过0、1、1.5、2、3、4、5或10。在一些实施方式中,所述配体为亲脂基团,所述亲脂基团优选选自:脂质、维生素、类固醇、C5-C30饱和或不饱和脂肪酸、C5-C30烷基、以及包含至少一个带正电的氨基酸残基的多肽;所述亲脂基团更优选地选自胆固醇、C16饱和或不饱和脂肪酸、C16烷基、C22饱和或不饱和脂肪酸或C22烷基。合适的亲脂基团可为脂肪族、脂环族、聚脂环化合物、类固醇、直链或支链脂肪烃族。In some embodiments, when used for extrahepatic delivery, including but not limited to, central nervous system (CNS) (such as brain, spine or eye), muscle, lung or fat, antisense oligonucleotide or RNAi agent may include one or more lipophilic groups, and the lipophilic group is conjugated to one or more positions of oligonucleotide or RNAi agent antisense strand and/or sense strand.For example, lipophilic group can be connected to antisense oligonucleotide or RNAi agent antisense strand and/or sense strand via core base, sugar moiety or internucleoside bond.In certain embodiments, the lipophilic group with phosphoramidite group is coupled with 3' end or 5' end of sense strand or antisense strand in the last synthesis cycle.In certain embodiments, the octanol-water partition coefficient of lipophilic group exceeds 0,1,1.5,2,3,4,5 or 10. In some embodiments, the ligand is a lipophilic group, which is preferably selected from lipids, vitamins, steroids, C 5 -C 30 saturated or unsaturated fatty acids, C 5 -C 30 alkyl groups, and polypeptides comprising at least one positively charged amino acid residue; the lipophilic group is more preferably selected from cholesterol, C 16 saturated or unsaturated fatty acids, C 16 alkyl groups, C 22 saturated or unsaturated fatty acids or C 22 alkyl groups. Suitable lipophilic groups may be aliphatic, alicyclic, polyalicyclic compounds, steroids, straight-chain or branched aliphatic hydrocarbons.
示例性的亲脂基团例如是在WO 2021/092371中描述的亲脂基团Y132至Y135、Y158、Y165至Y168、L10、L57、L321、L322、Q361至Q367、Q361s至Q367s、Q370、Q377至Q379、Q383等。其他可与本发明的反义寡核苷酸或RNAi剂连接的配体可参见WO2017053995、WO2019217459、WO2021092371、WO2017053995、WO2010039548、WO2023064530、WO2022213118和WO2019079386,通过引用将它们各自的全部内容合并至本文中。Exemplary lipophilic groups are, for example, lipophilic groups Y132 to Y135, Y158, Y165 to Y168, L10, L57, L321, L322, Q361 to Q367, Q361s to Q367s, Q370, Q377 to Q379, Q383, etc. described in WO 2021/092371. Other ligands that can be linked to the antisense oligonucleotides or RNAi agents of the present invention can be found in WO2017053995, WO2019217459, WO2021092371, WO2017053995, WO2010039548, WO2023064530, WO2022213118 and WO2019079386, the entire contents of each of which are incorporated herein by reference.
在某些实施方案中,配体包括碳水化合物。“碳水化合物”是指由一个或多个具有至少6个碳原子(可以是直链、支链或环状)的单糖单元组成的化合物,每个碳原子上连接有氧、氮或硫原子。碳水化合物包括但不限于糖(例如,单糖、二糖、三糖、四糖和含有约4、5、6、7、8或9个单糖单元的寡糖)和多糖(如淀粉、糖原、纤维素和多糖胶)。在一些实施方案中,结合到配体中的碳水化合物是选自戊糖、己糖或庚糖以及包括这样的单糖单元的二糖和三糖。在其他实施方案中,结合到配体中的碳水化合物是氨基糖,例如氨基半乳糖、葡糖胺、N-乙酰半乳糖胺和N-乙酰葡糖胺。In certain embodiments, part includes carbohydrate. "Carbohydrate" refers to a compound composed of one or more monosaccharide units with at least 6 carbon atoms (can be straight chain, branched or cyclic), each carbon atom is connected with oxygen, nitrogen or sulfur atoms. Carbohydrate includes but is not limited to sugar (for example, monosaccharide, disaccharide, trisaccharide, tetrasaccharide and oligosaccharide containing about 4,5,6,7,8 or 9 monosaccharide units) and polysaccharide (such as starch, glycogen, cellulose and polysaccharide glue). In some embodiments, the carbohydrate that is incorporated into the part is selected from pentose, hexose or heptose and includes disaccharides and trisaccharides of such monosaccharide units. In other embodiments, the carbohydrate that is incorporated into the part is amino sugar, for example aminogalactose, glucosamine, N-acetylgalactosamine and N-acetylglucosamine.
在一些实施方案中,配体包括己糖或己糖胺。己糖可以选自葡萄糖、半乳糖、甘露糖、岩藻糖或果糖。己糖胺可以选自果糖胺、半乳糖胺、葡糖胺或甘露糖胺。在某些实施方案中,配体包括葡萄糖、半乳糖、氨基半乳糖或葡糖胺。在一个实施方案中,配体包括葡萄糖、葡糖胺或N-乙酰葡糖胺。在另一个实施方案中,配体包括半乳糖、氨基半乳糖或N-乙酰基半乳糖胺。在特定的实施方案中,包括葡萄糖、半乳糖和N-乙酰基半乳糖胺(GalNAc)的配体在将RNA靶向肝细胞方面特别有效,因为这些配体与肝细胞表面表达的ASGR结合。可并入本发明的反义寡核苷酸或RNAi剂中的含GalNAc-或半乳糖的配体的实例描述于USP 7,491,805、8,106,022和8,877,917;美国专利公开号US20030130186;以及WIPO公开号第WO 2013/166155,所有这些文献全部通过引用并入本文。In some embodiments, the ligand comprises a hexose or a hexosamine. The hexose may be selected from glucose, galactose, mannose, fucose or fructose. The hexosamine may be selected from fructosamine, galactosamine, glucosamine or mannosamine. In certain embodiments, the ligand comprises glucose, galactose, galactosamine or glucosamine. In one embodiment, the ligand comprises glucose, glucosamine or N-acetylglucosamine. In another embodiment, the ligand comprises galactose, galactosamine or N-acetylgalactosamine. In a specific embodiment, ligands comprising glucose, galactose and N-acetylgalactosamine (GalNAc) are particularly effective in targeting RNA to hepatocytes because these ligands bind to ASGR expressed on the surface of hepatocytes. Examples of GalNAc- or galactose-containing ligands that can be incorporated into the antisense oligonucleotides or RNAi agents of the invention are described in USP 7,491,805, 8,106,022, and 8,877,917; U.S. Patent Publication No. US20030130186; and WIPO Publication No. WO 2013/166155, all of which are incorporated herein by reference in their entirety.
在某些实施方案中,配体包括多价碳水化合物部分。如本文所用,“多价碳水化合物部分”是指包含两个或多个能够与其他分子独立结合或相互作用的碳水化合物单元的部分。例如,多价碳水化合物部分包括两个或多个由碳水化合物组成的结合结构域,所述结合结构域可以与同一分子上的两个或更多个不同分子或两个或更多个不同位点结合。碳水化合物部分的“价”表示碳水化合物部分内单个结合结构域的数量。例如,术语“单价”、“二价”、“三价”和“四价”相对于碳水化合物部分分别指具有一个、两个、三个和四个结合结构域的碳水化合物部分。多价碳水化合物部分可以包括多价乳糖部分、多价半乳糖部分、多价葡萄糖部分、多价N-乙酰基半乳糖胺部分、多价N-乙酰基葡糖胺部分、多价甘露糖部分或多价岩藻糖部分。在一些实施方案中,配体包括多价半乳糖部分。在其他实施方案中,配体包括多价N-乙酰基-半乳糖胺部分。在这些和其他实施方案中,多价碳水化合物部分可以是二价、三价或四价。在这样的实施方案中,多价碳水化合物部分可以是双分支的或三分支的。在一个特定的实施方案中,多价N-乙酰基半乳糖胺部分是三价或四价的。在另一个特定的实施方案中,多价半乳糖部分是三价的或四价。下文详细描述了用于掺入本发明的反义寡核苷酸或RNAi剂的示例性的含三价和四价GalNAc的配体。In certain embodiments, the ligand includes a multivalent carbohydrate portion. As used herein, a "multivalent carbohydrate portion" refers to a portion comprising two or more carbohydrate units that can independently bind or interact with other molecules. For example, a multivalent carbohydrate portion includes two or more binding domains consisting of carbohydrates, which can bind to two or more different molecules or two or more different sites on the same molecule. The "valence" of a carbohydrate portion indicates the number of single binding domains within the carbohydrate portion. For example, the terms "monovalent," "divalent," "trivalent," and "tetravalent" refer to carbohydrate portions having one, two, three, and four binding domains, respectively, relative to a carbohydrate portion. The multivalent carbohydrate portion can include a multivalent lactose portion, a multivalent galactose portion, a multivalent glucose portion, a multivalent N-acetylgalactosamine portion, a multivalent N-acetylglucosamine portion, a multivalent mannose portion, or a multivalent fucose portion. In some embodiments, the ligand includes a multivalent galactose portion. In other embodiments, the ligand includes a multivalent N-acetyl-galactosamine portion. In these and other embodiments, the multivalent carbohydrate moiety can be divalent, trivalent or tetravalent. In such embodiments, the multivalent carbohydrate moiety can be bi-branched or tri-branched. In a specific embodiment, the multivalent N-acetylgalactosamine moiety is trivalent or tetravalent. In another specific embodiment, the multivalent galactose moiety is trivalent or tetravalent. Exemplary trivalent and tetravalent GalNAc-containing ligands for incorporation into antisense oligonucleotides or RNAi agents of the present invention are described in detail below.
配体还可以包括整合素配体,例如与整合素(包括但不限于αVβ6)特异性结合的配体。合适的整合素配体例如是在WO2019089765A1或WO2022056286A1中提及的那些整合素配体,通过引用将其全部内容合并至本文中。The ligand can also include an integrin ligand, such as a ligand that specifically binds to an integrin (including but not limited to αVβ6). Suitable integrin ligands are, for example, those mentioned in WO2019089765A1 or WO2022056286A1, the entire contents of which are incorporated herein by reference.
配体还可以包括转铁蛋白受体1(TfR1)配体,例如是抗TfR1的抗体或多肽,合适的TfR1配体例如是在WO2022147209A1或WO2021154476A1中描述的TfR1抗体,或者是在WO2022101633A1中描述的双环肽配体,通过引用将这些专利文献的全部内容合并至本文中。The ligand may also include a transferrin receptor 1 (TfR1) ligand, such as an anti-TfR1 antibody or polypeptide. Suitable TfR1 ligands are, for example, the TfR1 antibodies described in WO2022147209A1 or WO2021154476A1, or the bicyclic peptide ligands described in WO2022101633A1. The entire contents of these patent documents are incorporated herein by reference.
配体可以直接或间接地连接或缀合到反义寡核苷酸或RNAi剂的RNA分子上。例如,在一些实施方案中,配体直接共价连接到反义寡核苷酸或RNAi剂的正义链或反义链。在其他实施方案中,配体通过接头共价连接到反义寡核苷酸或RNAi剂的正义链或反义链。配体可以连接到本发明的反义寡核苷酸或RNAi剂的正义链或反义链的核碱基、糖部分或核苷酸间连接处。The ligand can be directly or indirectly connected or conjugated to the RNA molecule of antisense oligonucleotide or RNAi agent.For example, in some embodiments, the ligand is directly covalently connected to the sense strand or antisense strand of antisense oligonucleotide or RNAi agent.In other embodiments, the ligand is covalently connected to the sense strand or antisense strand of antisense oligonucleotide or RNAi agent by a joint.The ligand can be connected to the core base, sugar moiety or internucleotide junction of the sense strand or antisense strand of antisense oligonucleotide or RNAi agent of the present invention.
在一些实施方案中,配体可以连接到正义链或反义链的3'或5'端。在某些实施方案中,配体共价连接到正义链的5'端。在这样的实施方案中,配体连接到正义链的5'-末端核苷酸上。在这些和其他实施方案中,配体连接在正义链的5'-末端核苷酸的5'-位置。在其他实施方案中,配体共价连接到正义链的3'端。例如,在一些实施方案中,配体连接到正义链的3'-末端核苷酸上。在某些这样的实施方案中,配体连接在正义链的3'端核苷酸的3'-位置。在替代实施方案中,配体连接在正义链的3'端附近,但在一个或多个末端核苷酸之前(即在1、2、3或4个末端核苷酸以前)。在一些实施方案中,配体连接在正义链的3'-末端核苷酸的糖的2'-位置。在其他实施方案中,配体连接在正义链的5'-末端核苷酸的糖的2'-位置。In some embodiments, the ligand can be connected to the 3' or 5' end of the sense strand or antisense strand. In certain embodiments, the ligand is covalently attached to the 5' end of the sense strand. In such embodiments, the ligand is attached to the 5'-terminal nucleotide of the sense strand. In these and other embodiments, the ligand is attached to the 5'-position of the 5'-terminal nucleotide of the sense strand. In other embodiments, the ligand is covalently attached to the 3' end of the sense strand. For example, in some embodiments, the ligand is attached to the 3'-terminal nucleotide of the sense strand. In some such embodiments, the ligand is attached to the 3'-position of the 3'-terminal nucleotide of the sense strand. In alternative embodiments, the ligand is attached near the 3' end of the sense strand, but before one or more terminal nucleotides (i.e., before 1, 2, 3 or 4 terminal nucleotides). In some embodiments, the ligand is attached to the 2'-position of the sugar of the 3'-terminal nucleotide of the sense strand. In other embodiments, the ligand is attached to the 2'-position of the sugar of the 5'-terminal nucleotide of the sense strand.
在某些实施方案中,配体通过接头连接到正义链或反义链。“接头”是指将配体共价连接到反义寡核苷酸或RNAi剂的多核苷酸组分的原子或一组原子。接头的长度可以为约1至约30个原子,约2至约28个原子,约3至约26个原子,约4至约24个原子,约6至约20个原子,约7至约20原子,约8至约20的原子,约8至约18个原子,以及约12至约18个原子。在一些实施方案中,接头可以包括双功能连接部分,其通常包括具有两个官能团的烷基部分。其中一个官能团被选择与感兴趣的化合物(例如RNAi剂链的有义或反义链)结合,而另一个官能团则被选择与基本上任何选择的基团结合,例如本文所述的配体。在某些实施方案中,接头包括链结构或重复单元的低聚物,例如乙二醇或氨基酸单元。通常在双官能连接部分中使用的官能团的实例包括但不限于用于与亲核基团反应的亲电试剂和用于与亲电基团反应的亲核试剂。在一些实施方案中,双官能连接部分包括氨基、羟基、羧酸、硫醇、不饱和键(例如双键或三键)等。In certain embodiments, the ligand is connected to a sense strand or an antisense strand by a joint." joint "refers to an atom or a group of atoms by which a ligand is covalently connected to a polynucleotide component of an antisense oligonucleotide or RNAi agent. The length of the joint can be about 1 to about 30 atoms, about 2 to about 28 atoms, about 3 to about 26 atoms, about 4 to about 24 atoms, about 6 to about 20 atoms, about 7 to about 20 atoms, about 8 to about 20 atoms, about 8 to about 18 atoms, and about 12 to about 18 atoms. In some embodiments, the joint can include a bifunctional linking portion, which generally includes an alkyl portion with two functional groups. One of the functional groups is selected to be combined with a compound of interest (such as the sense or antisense strand of an RNAi agent chain), and another functional group is selected to be combined with substantially any selected group, such as a ligand as described herein. In certain embodiments, the joint includes an oligomer of a chain structure or a repeating unit, such as ethylene glycol or an amino acid unit. Examples of functional groups commonly used in bifunctional linking moieties include, but are not limited to, electrophiles for reacting with nucleophilic groups and nucleophiles for reacting with electrophilic groups. In some embodiments, the bifunctional linking moiety includes amino, hydroxyl, carboxylic acid, thiol, unsaturated bonds (e.g., double bonds or triple bonds), etc.
可用于将配体连接到本发明的反义寡核苷酸或RNAi剂的正义链或反义链的接头包括但不限于吡咯烷、8-氨基-3,6-二氧辛酸、琥珀酰亚胺基-4-(N-马来酰亚胺甲基)环己烷-1-羧酸、6-氨基己酸、取代的C1-C20烷基、取代或未取代的C2-C20烯基或取代或未替代的C2-C20炔基。用于此类接头的优选取代基包括但不限于羟基、氨基、烷氧基、羧基、苄基、苯基、硝基、硫醇、硫代烷氧基、卤素、烷基、芳基、烯基和炔基。Linkers that can be used to link the ligand to the sense or antisense strand of the antisense oligonucleotide or RNAi agent of the invention include, but are not limited to, pyrrolidine, 8-amino-3,6-dioxooctanoic acid, succinimidyl-4-(N-maleimidomethyl)cyclohexane-1-carboxylic acid, 6-aminohexanoic acid, substituted C 1 -C 20 alkyl, substituted or unsubstituted C 2 -C 20 alkenyl, or substituted or unsubstituted C 2 -C 20 alkynyl. Preferred substituents for such linkers include, but are not limited to, hydroxyl, amino, alkoxy, carboxyl, benzyl, phenyl, nitro, thiol, thioalkoxy, halogen, alkyl, aryl, alkenyl, and alkynyl.
在某些实施方案中,接头是可裂解的。可裂解的接头是一种在细胞外足够稳定但在进入靶细胞时被裂解以释放通过接头结合在一起的两个部分。在一些实施方案中,可裂解接头在靶细胞中或在第一参考条件下(其可以例如被选择为模拟或代表细胞内条件)比在受试者的血液中裂解快至少10倍、20倍、30倍、40倍、50倍、60倍、70倍、80倍、90倍或更多,或至少100倍。In certain embodiments, the joint is cleavable. A cleavable joint is one that is sufficiently stable outside the cell but is cleaved to release two parts that are combined together by a joint when entering the target cell. In some embodiments, a cleavable joint is at least 10 times, 20 times, 30 times, 40 times, 50 times, 60 times, 70 times, 80 times, 90 times or more, or at least 100 times faster than cracking in the blood of the experimenter in the target cell or under the first reference condition (it can, for example, be selected as a simulation or represent intracellular conditions).
可裂解的接头易受裂解剂的影响,例如pH、氧化还原电位或降解分子的存在。一般来说,裂解剂在细胞内比在血清或血液中更普遍,或在细胞内发现的水平或活性更高。此类裂解剂的实例包括:针对特定底物选择的或不具有底物特异性的氧化还原剂,包括例如存在于细胞中的氧化酶或还原酶;酯酶;可以产生酸性环境的内体或试剂,例如那些导致pH为5或更低的试剂;可以作为一般酸、肽酶(可以是底物特异性的)和磷酸酶来水解或降解可酸裂解的接头的酶。Cleavable joints are susceptible to the effects of cleavage agents, such as pH, redox potential, or the presence of degradation molecules. In general, cleavage agents are more prevalent in cells than in serum or blood, or are found at higher levels or activities in cells. Examples of such cleavage agents include: redox agents selected for specific substrates or without substrate specificity, including, for example, oxidases or reductases present in cells; esterases; endosomes or reagents that can produce an acidic environment, such as those that result in a pH of 5 or less; enzymes that can hydrolyze or degrade acid-cleavable joints as general acids, peptidases (which can be substrate-specific), and phosphatases.
可裂解接头可包含对pH敏感的部分。人血清的pH为7.4,而平均的细胞内pH略低,范围为约7.1-7.3。内体具有更酸性的pH,在5.5-6.0的范围内,溶酶体具有更酸性的pH(5.0左右)。一些接头将具有在优选pH下被裂解的可裂解基团,从而将RNA分子从细胞内的配体释放,或释放到细胞的期望细胞器中。接头可以包括可被特定酶裂解的可裂解基团。结合到接头中的可裂解基团的类型可以取决于要靶向的细胞。例如,肝脏靶向配体可以通过包括酯基的接头与RNA分子连接。肝细胞富含酯酶,因此接头在肝细胞中比在不富含酯酶的细胞类型中更有效地裂解。富含酯酶的其他类型的细胞包括肺、肾皮质和睾丸的细胞。当靶向富含肽酶的细胞,如肝细胞和滑膜细胞时,可以使用含有肽键的接头。Cleaving joints may include pH-sensitive parts. The pH of human serum is 7.4, while the average intracellular pH is slightly lower, ranging from about 7.1-7.3. Endosomes have a more acidic pH, and lysosomes have a more acidic pH (about 5.0) in the range of 5.5-6.0. Some joints will have a cleavable group that is cleaved at a preferred pH, thereby releasing the RNA molecule from the ligand in the cell, or releasing it into the desired organelle of the cell. The joint may include a cleavable group that can be cleaved by a specific enzyme. The type of cleavable group incorporated into the joint may depend on the cell to be targeted. For example, a liver targeting ligand may be connected to an RNA molecule by a joint including an ester group. Hepatocytes are rich in esterases, so joints are more effectively cleaved in hepatocytes than in cell types that are not rich in esterases. Other types of cells rich in esterases include cells of the lung, renal cortex, and testis. When targeting cells rich in peptidases, such as hepatocytes and synovial cells, a joint containing a peptide bond may be used.
适用于将配体连接到本发明的反义寡核苷酸或RNAi剂中的正义链或反义链的其他类型的接头是本领域已知的,例如那些在美国专利7,723,509、8,017,762、8,828,956、8,877,917以及9,181,551中描述的接头,所有这些文献全部通过引用并入本文。Other types of linkers suitable for attaching ligands to the sense or antisense strands in the antisense oligonucleotides or RNAi agents of the invention are known in the art, such as those described in U.S. Pat. Nos. 7,723,509, 8,017,762, 8,828,956, 8,877,917, and 9,181,551, all of which are incorporated herein by reference in their entirety.
在一些实施方案中,共价连接到本发明的反义寡核苷酸或RNAi剂的正义链或反义链的配体包括GalNAc部分,例如多价GalNAc。在一些实施方案中,多价GalNAc部分是三价GalNAc,并且连接到正义链的3'端。在其他实施方案中,多价GalNAc部分是三价GalNAc,并且连接到正义链的5'端。在其他实施方案中,多价GalNAc部分是四价GalNAc部分,并且连接到正义链的3'端。在其他实施方案中,多价GalNAc部分是四价GalNAc部分,并且连接到正义链的5'端。In some embodiments, the ligand covalently attached to the sense strand or antisense strand of the antisense oligonucleotide or RNAi agent of the present invention includes a GalNAc moiety, such as a multivalent GalNAc. In some embodiments, the multivalent GalNAc moiety is a trivalent GalNAc and is attached to the 3' end of the sense strand. In other embodiments, the multivalent GalNAc moiety is a trivalent GalNAc and is attached to the 5' end of the sense strand. In other embodiments, the multivalent GalNAc moiety is a tetravalent GalNAc moiety and is attached to the 3' end of the sense strand. In other embodiments, the multivalent GalNAc moiety is a tetravalent GalNAc moiety and is attached to the 5' end of the sense strand.
在一些实施方案中,所述配体是L96、NAG25和NAG37,分别具有如下所示的结构式,其中波浪线代表与反义寡核苷酸或RNAi剂的正义链或反义链连接的位置。
In some embodiments, the ligand is L96, NAG25, and NAG37, each having the structural formula shown below, wherein the wavy lines represent the position of attachment to the sense or antisense strand of the antisense oligonucleotide or RNAi agent.
药物组合物Pharmaceutical composition
本发明还包括药物组合物和制剂,其包含本文所述的反义寡核苷酸或RNAi剂和药学上可接受的载体、赋形剂或稀释剂。这样的组合物和制剂可用于减少有需要的患者中ACVR2B基因的表达。在考虑临床应用的情况下,药物组合物和制剂将以适合预期应用的形式制备。通常,这将需要制备基本上不含热原以及可能对人类或动物有害的其他杂质的组合物。The present invention also includes pharmaceutical compositions and preparations comprising the antisense oligonucleotides or RNAi agents described herein and a pharmaceutically acceptable carrier, excipient or diluent. Such compositions and preparations can be used to reduce the expression of the ACVR2B gene in patients in need. In the case of considering clinical applications, pharmaceutical compositions and preparations will be prepared in a form suitable for the intended application. Typically, this will require the preparation of a composition that is substantially free of pyrogens and other impurities that may be harmful to humans or animals.
用于配制药物组合物的成分和方法取决于许多标准,包括但不限于给药途径、待治疗的疾病或病症的类型和程度或待给药的剂量。在一些实施方案中,基于预期的递送途径来配制药物组合物。例如,在某些实施方案中,药物组合物被配制用于胃肠外递送。肠外给药形式包括静脉内、动脉内、皮下、鞘内、腹膜内或肌肉内注射或输注。在一个实施方案中,所述药物组合物被配制用于静脉内递送。在这样的实施方案中,药物组合物可以包括基于脂质的递送载体。在另一个实施方案中,所述药物组合物被配制用于皮下递送。在这样的实施方案中,药物组合物可以包括靶向配体(例如本文所述的含GalNAc或含抗体的配体)。The composition and method for preparing the pharmaceutical composition depend on many standards, including but not limited to route of administration, the type and degree of the disease to be treated or the condition or the dosage to be administered. In some embodiments, the pharmaceutical composition is prepared based on the expected delivery route. For example, in certain embodiments, the pharmaceutical composition is formulated for parenteral delivery. Parenteral administration forms include intravenous, intraarterial, subcutaneous, intrathecal, intraperitoneal or intramuscular injection or infusion. In one embodiment, the pharmaceutical composition is formulated for intravenous delivery. In such an embodiment, the pharmaceutical composition may include a lipid-based delivery vehicle. In another embodiment, the pharmaceutical composition is formulated for subcutaneous delivery. In such an embodiment, the pharmaceutical composition may include a targeting ligand (such as a ligand containing GalNAc or an antibody as described herein).
在一些实施方案中,药物组合物包含有效量的本文所述的反义寡核苷酸或RNAi剂。“有效量”是指足以产生有益或期望的临床结果的量。在一些实施方案中,有效量是足以减少患者的特定组织或细胞类型(例如肝脏或肝细胞)中ACVR2B基因表达的量。本发明的反义寡核苷酸或RNAi剂的有效量可以为约0.01mg/kg体重至约100mg/kg体重,并且可以每天、每周、每月或以更长的间隔给药。准确确定具体的有效给药量和给药频率可能基于几个因素,包括患者的体型、年龄和一般情况、待治疗的疾病类型(例如心肌梗死、冠状动脉疾病、外周动脉疾病、中风)、所使用的特定反义寡核苷酸或RNAi剂以及给药途径。In some embodiments, the pharmaceutical composition comprises an effective amount of antisense oligonucleotides or RNAi agents as described herein. "Effective amount" refers to an amount sufficient to produce a beneficial or desired clinical outcome. In some embodiments, an effective amount is an amount sufficient to reduce the expression of the ACVR2B gene in a specific tissue or cell type (e.g., liver or hepatocyte) of the patient. The effective amount of the antisense oligonucleotides or RNAi agents of the present invention can be from about 0.01 mg/kg body weight to about 100 mg/kg body weight, and can be administered daily, weekly, monthly or at longer intervals. Accurately determining a specific effective dosage and dosing frequency may be based on several factors, including the patient's body size, age and general condition, the type of disease to be treated (e.g., myocardial infarction, coronary artery disease, peripheral artery disease, stroke), the specific antisense oligonucleotides or RNAi agents used, and the route of administration.
本发明药物组合物的给药可以通过任何常见途径进行,只要靶组织可通过该途径获得即可。这些途径包括但不限于肠外(例如,皮下、肌肉内、腹膜内或静脉内)、口服、鼻腔、口腔、皮内、透皮和舌下途径,或通过直接注射到肝组织中或通过肝门静脉递送。在一些实施方案中,所述药物组合物是非肠道给药的。例如,在某些实施方案中,药物组合物通过静脉内给药。在其他实施方案中,所述药物组合物是皮下给药的。The administration of the pharmaceutical composition of the present invention can be carried out by any common route, as long as the target tissue can be obtained by the route. These routes include, but are not limited to, parenteral (e.g., subcutaneous, intramuscular, intraperitoneal or intravenous), oral, nasal, oral, intradermal, transdermal and sublingual routes, or by direct injection into liver tissue or by delivery through the portal vein. In some embodiments, the pharmaceutical composition is parenteral. For example, in certain embodiments, the pharmaceutical composition is administered intravenously. In other embodiments, the pharmaceutical composition is subcutaneously administered.
胶体分散系统可以用作本发明的反义寡核苷酸或RNAi剂的递送载体,例如大分子复合物、纳米胶囊、微球、珠粒和基于脂质的系统,包括水包油乳液、胶束、混合胶束和脂质体。适用于输送本发明核酸的市售脂肪乳剂包括Intralipid(Baxter International Inc.)、Liposyn(Abbott Pharmaceuticals)、Lipsyn II(Hospira)、Liposyn III(Hospire)、Nutrilipid(B.Braun Medical Inc.)和其他类似的脂肪乳剂。用作体内递送载体的优选胶体系统是脂质体(即人工膜囊泡)。本发明的RNAi剂可以包封在脂质体内,或者可以与其形成复合物,特别是与阳离子脂质体形成复合物。或者,本发明的RNAi剂可以与脂质复合,特别是与阳离子脂质复合。合适的阳离子脂质例如是二醇基四甲基氨基丙基(DOTAP)和二醇基磷脂酰乙醇胺(DOTMA)。Colloidal dispersion systems can be used as delivery vehicles for antisense oligonucleotides or RNAi agents of the present invention, such as macromolecular complexes, nanocapsules, microspheres, beads, and lipid-based systems, including oil-in-water emulsions, micelles, mixed micelles, and liposomes. Commercially available fat emulsions suitable for delivering nucleic acids of the present invention include Intralipid (Baxter International Inc.), Liposyn (Abbott Pharmaceuticals), Lipsyn II (Hospira), Liposyn III (Hospire), Nutrilipid (B. Braun Medical Inc.) and other similar fat emulsions. The preferred colloidal system used as an in vivo delivery vehicle is a liposome (i.e., an artificial membrane vesicle). The RNAi agent of the present invention can be encapsulated in a liposome, or can form a complex with it, particularly with a cationic liposome. Alternatively, the RNAi agent of the present invention can be complexed with lipids, particularly with cationic lipids. Suitable cationic lipids are, for example, diol tetramethylaminopropyl (DOTAP) and diol phosphatidylethanolamine (DOTMA).
脂质体制剂特别适合于局部给药,脂质体相对于其他制剂具有若干优点。这样的优点包括与所给药的药物的高全身吸收有关的副作用减少,所给药的药物在所需靶标处的积累增加以及向皮肤中给药反义寡核苷酸或RNAi剂的能力。在一些实施方式中,脂质体用于将反义寡核苷酸或RNAi剂递送至表皮细胞,并且还增强了反义寡核苷酸或RNAi剂向真皮组织例如皮肤内的渗透。Liposomal formulations are particularly suitable for topical administration, and liposomes have several advantages over other formulations. Such advantages include reduced side effects associated with high systemic absorption of the administered drug, increased accumulation of the administered drug at the desired target, and the ability to administer antisense oligonucleotides or RNAi agents to the skin. In some embodiments, liposomes are used to deliver antisense oligonucleotides or RNAi agents to epidermal cells, and also enhance the penetration of antisense oligonucleotides or RNAi agents into dermal tissues such as the skin.
本发明的反义寡核苷酸或RNAi剂可以被完全包封在脂质制剂中,例如LNP或其他核酸-脂质颗粒中。如本文所用,术语“LNP”是指稳定的核酸-脂质颗粒。LNP通常包含阳离子脂质,非阳离子脂质和防止颗粒聚集的脂质(例如PEG-脂质偶联物)。LNP对全身应用非常有用,因为它们在静脉(i.v.)注射后表现出延长的循环时间,并积累在远端部位(例如与给药部位物理上分离的部位)。LNP包括“pSPLP”,其包含如WO00/03683号中所述的封装的缩合剂-核酸复合物。本发明的LNP颗粒通常具有约50nm至约150nm,更典型地约60nm至约130nm,更典型地约70nm至约110nm,最典型地约70nm至约90nm的平均直径,并且基本上无毒。另外,当核酸存在于本发明的核酸-脂质颗粒中时,其在水溶液中对核酸酶的降解具有抗性。核酸-脂质颗粒及其制备方法公开于,例如,美国专利第5,976,567;5,981,501;6,534,484;6,586,410;6,815,432号;美国公开第2010/0324120号和WO 96/40964号。在一个实施方式中,脂质与药物之比(质量/质量的比)(例如脂质与RNAi剂之比)将在约1:1至约50:1,约1:1至约25:1,约3:1至约15:1,约4:1至约10:1,约5:1至约9:1或约6:1至约9:1的范围内。Antisense oligonucleotides or RNAi agents of the present invention can be completely encapsulated in lipid formulations, such as LNP or other nucleic acid-lipid particles. As used herein, the term "LNP" refers to stable nucleic acid-lipid particles. LNP generally comprises cationic lipids, non-cationic lipids and lipids (such as PEG-lipid conjugates) that prevent particle aggregation. LNP is very useful for systemic applications because they show extended circulation time after intravenous (i.v.) injection and accumulate in distal sites (such as sites physically separated from the administration site). LNP includes "pSPLP", which includes the encapsulated condensing agent-nucleic acid complex as described in WO00/03683. The LNP particles of the present invention generally have an average diameter of about 50nm to about 150nm, more typically about 60nm to about 130nm, more typically about 70nm to about 110nm, most typically about 70nm to about 90nm, and are substantially nontoxic. In addition, when nucleic acid is present in nucleic acid-lipid particles of the present invention, it is resistant to the degradation of nucleases in aqueous solution. Nucleic acid-lipid particles and methods for making them are disclosed in, for example, U.S. Patent Nos. 5,976,567; 5,981,501; 6,534,484; 6,586,410; 6,815,432; U.S. Publication Nos. 2010/0324120 and WO 96/40964. In one embodiment, the ratio of lipid to drug (mass/mass ratio) (e.g., lipid to RNAi agent) will be in the range of about 1:1 to about 50:1, about 1:1 to about 25:1, about 3:1 to about 15:1, about 4:1 to about 10:1, about 5:1 to about 9:1 or about 6:1 to about 9:1.
阳离子脂质可以是,例如,N,N-二油基-N,N-二甲基氯化铵(DODAC),N,N-二硬脂基-N,N-二甲基溴化铵(DDAB),N-(I-(2,3-二油酰氧基)丙基)-N,N,N-三甲基氯化铵(DOTAP),N-(1-(2,3-二油基氧基)丙基)-N,N,N-三甲基氯化铵(DOTMA),N,N-二甲基-2,3-二油基氧基)丙胺(DODMA),1,2-二油基氧基-N,N-二甲基氨基丙烷(DLinDMA),1,2-二油基氧基-N,N-二甲基氨基丙烷(DLenDMA),1,2-二油基氨基甲酰氧基-3-二甲基氨基丙烷(DLin-C-DAP),1,2-二羟基丙氧基-3-(二甲基氨基)乙酰氧基丙烷(DLin-DAC),1,2-二羟基丙氧基-3-吗啉丙烷(DLin-MA),1,2-二亚麻基-3-二甲基氨基丙烷(DLinDAP),1,2-二亚油基硫代-3-二甲基氨基丙烷(DLin-S-DMA),1-亚油酰基-2-亚油基氧基-3-二甲基氨基丙烷(DLin-2-DMAP),1,2-二亚油基氧基-3-三甲基氨基丙烷氯化物盐(DLin-TMA.Cl),1,2-二亚油酰基-3-三甲基氨基丙烷氯化物盐(DLin-TAP.Cl),1,2-二亚油酰氧基-3-(N-甲基哌嗪子基)丙烷(DLin-MPZ)或3-(N,N-二亚油基氨基)-1,2-丙二醇(DLinAP),3-(N,N-二油基氨基)-1,2-丙二醇(DOAP),1,2-二亚油基氧代-3-(2-N,N-二甲基氨基)乙氧基丙烷(DLin-EG-DMA),1,2-二亚麻基氧基-N,N-二甲基氨基丙烷(DLinDMA),2,2-二亚油基-4-二甲基氨基甲基-[1,3]-二氧戊环(DLin-K-DMA)或其类似物,(3aR,5s,6aS)-N,N-二甲基-2,2-二((9Z,12Z)-十八碳-9,12-二烯基)四氢-3aH-环戊烯并[d][1,3]二氧杂环戊烯-5-胺(ALN100),(6Z,9Z,28Z,31Z)-三十七碳-6,9,28,31-四烯-19-基4-(二甲基氨基)丁酸酯(MC3),1,1'-(2-(4-(2-((2-(双(2-(双(2-羟基十二烷基)氨基)乙基)(2-羟基十二烷基)氨基)乙基)哌嗪-1-基)乙基氮杂二基)二癸癸-2-醇(Tech G1)或其混合物。阳离子脂质可占颗粒中存在的总脂质的约20mol%至约50mol%,或约40mol%。The cationic lipid can be, for example, N,N-dioleyl-N,N-dimethylammonium chloride (DODAC), N,N-distearyl-N,N-dimethylammonium bromide (DDAB), N-(1-(2,3-dioleyloxy)propyl)-N,N,N-trimethylammonium chloride (DOTAP), N-(1-(2,3-dioleyloxy)propyl)-N,N,N-trimethylammonium chloride (DOTMA), N,N-dimethyl-2,3-dioleyloxy)propylamine (DODMA), 1,2-dioleyloxy-N,N-dimethylaminopropane (DLinDMA), 1,2-dioleyloxy-N,N-dimethylaminopropane (DLenDMA), 1,2-dioleylcarbamoyloxy-3-dimethylaminopropane (DLinDMA), 1,2-dioleylcarbamo ...N,N-dimethylaminopropane (DLenDMA), 1,2-dioleylcarbamoyloxy-N,N-trimethylaminopropane (DOTAP), N-(1-(2,3-dioleyloxy)propyl)-N,N,N-trimethylammonium chloride (DOTMA), N,N-dimethyl-2,3-dioleyloxy)propylamine (DODMA), 1,2-dioleylcarbamoyloxy-N,N-dimethylaminopropane (DLinDMA), 1,2-dioleylcarbamoyloxy-N,N-dimethylaminopropane (DLenDMA), 1,2-dioleylcarbamoyloxy-N,N-dimethylaminopropane (DLenDMA), 1,2-dioleylcar 1,2-dihydroxypropoxy-3-(dimethylamino)acetoxypropane (DLin-DAC), 1,2-dihydroxypropoxy-3-morpholinopropane (DLin-MA), 1,2-dilinoleyl-3-dimethylaminopropane (DLinDAP), 1,2-dilinoleylthio-3-dimethylaminopropane (DLin-S-DMA), 1-linoleoyl-2-linoleyloxy-3-dimethylaminopropane (DLin-2-DMAP), 1,2-dilinoleyloxy-3-trimethylaminopropane chloride (DLin-TMA.Cl), 1,2-dilinoleoyl-3-trimethylaminopropane chloride (DLin-TA P.Cl), 1,2-dilinoleoyloxy-3-(N-methylpiperazino)propane (DLin-MPZ) or 3-(N,N-dilinoleylamino)-1,2-propanediol (DLinAP), 3-(N,N-dioleylamino)-1,2-propanediol (DOAP), 1,2-dilinoleyloxy-3-(2-N,N-dimethylamino)ethoxypropane (DLin-EG-DMA), 1,2-dilinoleyloxy-N,N-dimethylaminopropane (DLinDMA), 2,2-dilinoleyl-4-dimethylaminomethyl-[1,3]-dioxolane (DLin-K-DMA) or its analogs, (3aR,5s,6aS)-N,N-dimethyl-2,2-di ((9Z,12Z)-octadec-9,12-dienyl)tetrahydro-3aH-cyclopenta[d][1,3]dioxol-5-amine (ALN100), (6Z,9Z,28Z,31Z)-heptatriacontriacontria-6,9,28,31-tetraen-19-yl 4-(dimethylamino)butyrate (MC3), 1,1'-(2-(4-(2-((2-(bis(2-(bis(2-hydroxydodecyl)amino)ethyl)(2-hydroxydodecyl)amino)ethyl)piperazin-1-yl)ethylazadiyl)didecane-2-ol (Tech G1), or a mixture thereof. The cationic lipid may comprise from about 20 mol% to about 50 mol%, or about 40 mol%, of the total lipid present in the particle.
在一些实施方式中,化合物2,2-二亚油基-4-二甲基氨基乙基-[1,3]-二氧戊环可用于制备脂质-siRNA纳米粒。在一些实施方式中,脂质-siRNA颗粒包含40%2,2-二亚油基-4-二甲基氨基乙基-[1,3]-二氧戊环:10%DSPC:40%胆固醇:10%PEG-C-DOMG(摩尔百分比),粒径为63.0±20nm,siRNA/脂质的比为0.027。In some embodiments, the compound 2,2-dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane can be used to prepare lipid-siRNA nanoparticles. In some embodiments, the lipid-siRNA particles comprise 40% 2,2-dilinoleyl-4-dimethylaminoethyl-[1,3]-dioxolane: 10% DSPC: 40% cholesterol: 10% PEG-C-DOMG (molar percentage), a particle size of 63.0±20nm, and a siRNA/lipid ratio of 0.027.
可电离/非阳离子脂质可以是阴离子脂质或中性脂质,包括但不限于二硬脂酰基磷脂酰胆碱(DSPC),二油酰基磷脂酰胆碱(DOPC),二棕榈酰基磷脂酰胆碱(DPPC),二油酰基磷脂酰甘油甘油(DOPG),二棕榈酰基DP-酰基甘油基甘油磷脂酰乙醇胺(DOPE),棕榈酰油酰磷脂酰胆碱(POPC),棕榈酰油酰磷脂酰乙醇胺(POPE),油酰-磷脂酰乙醇胺4-(N-马来酰亚胺基甲基)-环己烷-1-羧酸酯(DOPE-mal),二棕榈酰磷脂酰乙醇胺(DPPE),二豆蔻酰基磷脂酰乙醇胺(DMPE),二硬脂酰磷脂酰乙醇胺(DSPE),16-O-单甲基PE,16-O-二甲基PE,18-1-反式PE,1-硬脂酰基-2-油酰基-磷脂酰乙醇胺(SOPE),胆固醇或其混合物。非阳离子脂质可以是颗粒中存在的总脂质的约5mol%至约90mol%,约10mol%,或约58mol%(如果包括胆固醇)。The ionizable/non-cationic lipids can be anionic lipids or neutral lipids, including but not limited to distearoylphosphatidylcholine (DSPC), dioleoylphosphatidylcholine (DOPC), dipalmitoylphosphatidylcholine (DPPC), dioleoylphosphatidylglycerol (DOPG), dipalmitoyl DP-acylglycerol phosphatidylethanolamine (DOPE), palmitoyloleoylphosphatidylcholine (POPC), palmitoyloleoylphosphatidylethanolamine (POPE), oleoylphosphatidylcholine (POPC), palmitoyloleoylphosphatidylethanolamine (POPE), oleoylphosphatidylcholine (POPC), palmitoylphosphatidylcholine (POPE), oleoylphosphatidylcholine (POPC), palmitoylphosphatidylcholine (POPE), oleoylphosphatidylcholine (POPC), palmitoylphosphatidylcholine (POPE), oleoylphosphatidylcholine (POPC), palmitoylphosphatidylcholine (POPE), oleoylphosphatidylcholine (POPC), palmitoylphosphatidylcholine (DP ... The non-cationic lipid may be present in an amount of about 5 mol % to about 90 mol %, about 10 mol %, or about 58 mol % (if cholesterol is included) of the total lipid present in the particle.
抑制颗粒聚集的偶联脂质可以是例如聚乙二醇(PEG)-脂质,其包括但不限于PEG-二酰基甘油(DAG)、PEG-二烷氧基丙基(DAA)、PEG-磷脂、PEG-神经酰胺(Cer)或它们的混合物。PEG-DAA偶联物可以是例如PEG-二十二烷基氧基丙基(C12)、PEG-二肉豆蔻氧基丙基(C14)、PEG-二棕榈基氧基丙基(C14)或PEG-二硬脂基氧基丙基(C18)。防止颗粒聚集而偶联的脂质可以为颗粒中存在的总脂质的0mol%至约20mol%,或约2mol%。在一些实施方式中,核酸-脂质颗粒进一步包含胆固醇,例如占该颗粒中存在的总脂质的约10mol%至约60mol%,或约48mol%。The coupled lipids that inhibit particle aggregation can be, for example, polyethylene glycol (PEG)-lipids, including but not limited to PEG-diacylglycerols (DAG), PEG-dialkoxypropyls (DAA), PEG-phospholipids, PEG-ceramides (Cer) or mixtures thereof. PEG-DAA conjugates can be, for example, PEG-docosyloxypropyls (C12), PEG-dimyristyloxypropyls (C14), PEG-dipalmityloxypropyls (C14) or PEG-distearyloxypropyls (C18). Prevent particle aggregation and coupled lipids can be 0mol% to about 20mol% of the total lipids present in the particle, or about 2mol%. In some embodiments, nucleic acid-lipid particles further include cholesterol, for example, accounting for about 10mol% to about 60mol% of the total lipids present in the particle, or about 48mol%.
在一个实施方式中,类脂质ND98·4HCl(分子量1487)(参见美国专利申请12/056,230号,通过引用并入本文),胆固醇(Sigma-Aldrich)和PEG-神经酰胺C16(Avanti Polar Lipids)可用于制备脂质-dsRNA纳米粒(即LNP01颗粒)。乙醇中的每种储备溶液可按以下方法制备:ND98,133mg/ml;胆固醇,25mg/ml,PEG-神经酰胺C16,100mg/ml。然后可以将ND98,胆固醇和PEG-神经酰胺C16的储备溶液以例如42:48:10的摩尔比混合。可以将合并的脂质溶液与水性siRNA(例如在pH 5的乙酸钠中)混合,使得最终乙醇浓度为约35-45%,并且最终乙酸钠浓度为约100-300mM。脂质-siRNA纳米粒通常在混合时自发形成。In one embodiment, lipidoid ND98·4HCl (molecular weight 1487) (see U.S. Patent Application No. 12/056,230, incorporated herein by reference), cholesterol (Sigma-Aldrich), and PEG-ceramide C16 (Avanti Polar Lipids) can be used to prepare lipid-dsRNA nanoparticles (i.e., LNP01 particles). Each stock solution in ethanol can be prepared as follows: ND98, 133 mg/ml; cholesterol, 25 mg/ml, PEG-ceramide C16, 100 mg/ml. The stock solutions of ND98, cholesterol, and PEG-ceramide C16 can then be mixed in a molar ratio of, for example, 42:48:10. The combined lipid solution can be mixed with aqueous siRNA (e.g., in sodium acetate at pH 5) such that the final ethanol concentration is about 35-45% and the final sodium acetate concentration is about 100-300 mM. The lipid-siRNA nanoparticles typically form spontaneously upon mixing.
其他示例性脂质-siRNA制剂可参见例如WO2009/127060(SNALP)、PCT/US2010/022614(XTC)、US2010/0324120(MC3)、PCT/US09/63933(ALNY-100)和WO2010/129709(C12-200)。Other exemplary lipid-siRNA formulations can be found in, for example, WO2009/127060 (SNALP), PCT/US2010/022614 (XTC), US2010/0324120 (MC3), PCT/US09/63933 (ALNY-100), and WO2010/129709 (C12-200).
在一些实施方式中,可将本发明的反义寡核苷酸或RNAi制剂连接至细胞穿透肽(CPP),所述CPP可包含至少一个带正电的氨基酸或可离子化氨基酸,例如精氨酸,以形成肽-寡核苷酸共轭物。合适的形成肽-寡核苷酸共轭物的CPP可参见例如WO2022213118A1或WO2019079386A1中描述的那些,通过引用将其全部内容合并至本文中。In some embodiments, the antisense oligonucleotides or RNAi agents of the present invention can be linked to a cell penetrating peptide (CPP), which may include at least one positively charged amino acid or ionizable amino acid, such as arginine, to form a peptide-oligonucleotide conjugate. Suitable CPPs for forming peptide-oligonucleotide conjugates can be found, for example, in WO2022213118A1 or WO2019079386A1, which are incorporated herein by reference in their entirety.
适合注射使用的药物组合物包括,例如,无菌水溶液或分散体和无菌粉末,用于无菌注射溶液或分散液的即时制备。一般来说,这些制剂是无菌的,并且在一定程度上是流动的,易于注射。制剂应在生产和储存条件下保持稳定,并应保存以防止细菌和真菌等微生物的污染作用。合适的溶剂或分散介质可以包含,例如,水、乙醇、多元醇(例如,甘油、丙二醇和液体聚乙二醇等)、它们的合适混合物和植物油。例如,可以通过使用诸如卵磷脂的涂层、在分散的情况下通过保持所需的颗粒尺寸以及通过使用表面活性剂来保持适当的流动性。可以通过各种抗菌和抗真菌剂来预防微生物的作用,例如,对羟基苯甲酸酯、氯丁醇、苯酚、山梨酸、硫柳汞等。在许多情况下,优选包括等渗剂,例如糖或氯化钠。可注射组合物的延长吸收可以通过在组合物中使用延迟吸收的试剂来实现,例如单硬脂酸铝和明胶。Pharmaceutical compositions suitable for injection include, for example, sterile aqueous solutions or dispersions and sterile powders for the immediate preparation of sterile injection solutions or dispersions. In general, these preparations are sterile and, to a certain extent, fluid and easy to inject. The preparation should remain stable under production and storage conditions and should be preserved to prevent the contamination of microorganisms such as bacteria and fungi. Suitable solvents or dispersion media may include, for example, water, ethanol, polyols (e.g., glycerol, propylene glycol and liquid polyethylene glycol, etc.), their suitable mixtures and vegetable oils. For example, appropriate fluidity can be maintained by using a coating such as lecithin, by maintaining the desired particle size in the case of dispersion, and by using a surfactant. The effects of microorganisms can be prevented by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, sorbic acid, thimerosal, etc. In many cases, isotonic agents are preferably included, such as sugar or sodium chloride. The extended absorption of injectable compositions can be achieved by using agents that delay absorption in the composition, such as aluminum monostearate and gelatin.
无菌注射溶液可以通过将适量的活性化合物与任何其他成分(例如上文列举的成分)一起加入溶剂中,然后过滤灭菌来制备。通常,分散体是通过将各种灭菌的活性成分加入含有碱性分散介质和所需的其他成分,例如,如上所述。在用于制备无菌可注射溶液的无菌粉末的情况下,优选的制备方法包括真空干燥和冷冻干燥技术,其从其先前无菌过滤的溶液中产生活性成分及任何额外的所需成分的粉末。Sterile injectable solutions can be prepared by adding an appropriate amount of the active compound to a solvent together with any other ingredients (e.g., those listed above) and then filtering and sterilizing. Typically, dispersions are prepared by adding various sterilized active ingredients to a dispersion medium containing an alkaline dispersion medium and other desired ingredients, e.g., as described above. In the case of sterile powders for the preparation of sterile injectable solutions, preferred preparation methods include vacuum drying and freeze drying techniques, which produce a powder of the active ingredient and any additional desired ingredients from a previously sterile filtered solution thereof.
本发明的组合物通常可以以中性形式或盐形式配制。药学上可接受的盐包括,例如,衍生自无机酸(如盐酸或磷酸)或有机酸(如乙酸、草酸、酒石酸、扁桃酸等)的酸加成盐(由游离氨基形成)。与游离羧基形成的盐也可以衍生自无机碱(例如,钠、钾、铵、钙或氧化铁)或有机碱(例如异丙胺、三甲胺、组氨酸、普鲁卡因等)。在一些实施方案中,本发明的反义寡核苷酸或RNAi剂被配制为钠盐。The compositions of the present invention can be generally prepared in neutral form or salt form. Pharmaceutically acceptable salts include, for example, acid addition salts (formed by free amino groups) derived from inorganic acids (such as hydrochloric acid or phosphoric acid) or organic acids (such as acetic acid, oxalic acid, tartaric acid, mandelic acid, etc.). Salts formed with free carboxyl groups can also be derived from inorganic bases (such as sodium, potassium, ammonium, calcium or iron oxide) or organic bases (such as isopropylamine, trimethylamine, histidine, procaine, etc.). In some embodiments, the antisense oligonucleotides or RNAi agents of the present invention are formulated as sodium salts.
例如,对于水溶液形式的非肠道给药,溶液通常被适当地缓冲,并且液体稀释剂首先用例如足够的盐水或葡萄糖使其等渗。这样的水溶液可以用于例如静脉内、肌肉内、皮下和腹膜内给药。优选地,使用无菌水性介质。例如,可以将单剂量溶解在1毫升等渗NaCl溶液中,并添加到1000毫升皮下输液液体中,或在建议的输注部位注射。对于人体给药,制剂应符合当地食品药品监督管理局标准要求的无菌性、热原性、一般安全性和纯度标准。在某些实施方案中,本发明的药物组合物包含本文所述的无菌盐水溶液和反义寡核苷酸或RNAi剂或由这两者组成。在其他实施方案中,本发明的药物组合物包含本文所述的反义寡核苷酸或RNAi剂和无菌水(例如注射用水,WFI)或由这两者组成。在其他实施方案中,本发明的药物组合物包含本文所述的反义寡核苷酸或RNAi剂和磷酸盐缓冲盐水(PBS)或由其组成。For example, for parenteral administration in the form of an aqueous solution, the solution is usually appropriately buffered, and the liquid diluent is first made isotonic with, for example, sufficient saline or glucose. Such an aqueous solution can be used for, for example, intravenous, intramuscular, subcutaneous and intraperitoneal administration. Preferably, a sterile aqueous medium is used. For example, a single dose can be dissolved in 1 ml of isotonic NaCl solution and added to 1000 ml of subcutaneous infusion liquid, or injected at the infusion site of the suggestion. For human administration, the preparation should meet the sterility, pyrogenicity, general safety and purity standards required by the local Food and Drug Administration standards. In certain embodiments, the pharmaceutical composition of the present invention comprises sterile saline solution and antisense oligonucleotide or RNAi agent as described herein or consists of the two. In other embodiments, the pharmaceutical composition of the present invention comprises antisense oligonucleotide or RNAi agent as described herein and sterile water (e.g., water for injection, WFI) or consists of the two. In other embodiments, the pharmaceutical composition of the present invention comprises antisense oligonucleotide or RNAi agent as described herein and phosphate buffered saline (PBS) or consists of it.
在一些实施方案中,本发明的药物组合物与给药装置一起包装或储存在给药装置内。用于注射制剂的装置包括,但不限于注射端口、预填充注射器、自动注射器、注射泵、体内注射器和注射笔。雾化或粉末制剂的设备包括但不限于吸入器、吹入器、抽吸器等。因此,本发明包括含有本发明药物组合物的给药装置,用于治疗或预防本文所述的一种或多种疾病或病症。In some embodiments, the pharmaceutical composition of the present invention is packaged with or stored in a drug delivery device. Devices for injectable formulations include, but are not limited to, injection ports, prefilled syringes, automatic injectors, injection pumps, in vivo injectors, and injection pens. Equipment for atomized or powdered formulations includes, but is not limited to, inhalers, insufflators, aspirators, and the like. Therefore, the present invention includes a drug delivery device containing a pharmaceutical composition of the present invention for treating or preventing one or more diseases or conditions described herein.
治疗方法及用途Treatment methods and uses
本发明提供了一种通过使细胞与本文所述的任何一种反义寡核苷酸或RNAi剂接触来减少或抑制ACVR2B基因在细胞中的表达的方法。该细胞可以是体外的,也可以是体内的。ACVR2B基因表达可以通过测量ACVR2B mRNA或ACVR2B-C蛋白的量或水平来评估。在用本发明的反义寡核苷酸或RNAi剂处理的细胞或动物中ACVR2B表达的减少可以相对于未用RNAi剂处理或用对照RNAi剂处理的细胞和动物中的ACVR2B表达来确定。例如,在一些实施方案中,通过(a)测量用本发明的RNAi剂处理的细胞中ACVR2B mRNA的量或水平来评估ACVR2B表达的减少,(b)测量用对照RNAi剂(例如,针对细胞中未表达的RNA分子的RNAi剂或具有无义或加扰序列的RNAi剂)或无RNAi剂处理的细胞中ACVR2B mRNA的量或水平,以及(c)将(a)中经处理的细胞测得的ACVR2B mRNA水平与(b)中对照细胞的ACVR2B mRNA水平进行比较。在比较之前,可以将处理的细胞和对照细胞中的ACVR2B mRNA水平标准化为对照基因(例如18S核糖体RNA或持家基因)的RNA水平。ACVR2B mRNA水平可以通过多种方法测量,包括Northern印迹分析、核酸酶保护分析、荧光原位杂交(FISH)、逆转录酶(RT)-PCR、实时RT-PCR、定量PCR、液滴数字PCR等。The present invention provides a method for reducing or inhibiting the expression of the ACVR2B gene in a cell by contacting the cell with any one of the antisense oligonucleotides or RNAi agents described herein. The cell can be in vitro or in vivo. ACVR2B gene expression can be assessed by measuring the amount or level of ACVR2B mRNA or ACVR2B-C protein. The reduction in ACVR2B expression in cells or animals treated with the antisense oligonucleotides or RNAi agents of the present invention can be determined relative to the expression of ACVR2B in cells and animals not treated with the RNAi agent or treated with a control RNAi agent. For example, in some embodiments, reduction in ACVR2B expression is assessed by (a) measuring the amount or level of ACVR2B mRNA in cells treated with an RNAi agent of the invention, (b) measuring the amount or level of ACVR2B mRNA in cells treated with a control RNAi agent (e.g., an RNAi agent directed to an RNA molecule not expressed in the cell or an RNAi agent with a nonsense or scrambled sequence) or no RNAi agent, and (c) comparing the ACVR2B mRNA level measured in the treated cells in (a) to the ACVR2B mRNA level in the control cells in (b). Prior to comparison, the ACVR2B mRNA levels in the treated cells and the control cells can be normalized to the RNA level of a control gene (e.g., 18S ribosomal RNA or a housekeeping gene). ACVR2B mRNA levels can be measured by a variety of methods, including Northern blot analysis, nuclease protection assays, fluorescence in situ hybridization (FISH), reverse transcriptase (RT)-PCR, real-time RT-PCR, quantitative PCR, droplet digital PCR, and the like.
在一些实施方案中,评估ACVR2B表达水平的方法在体外在天然表达ACVR2B基因的细胞或已被工程化以表达ACVR2B的细胞中进行。In some embodiments, the method of assessing ACVR2B expression levels is performed in vitro in cells that naturally express the ACVR2B gene or in cells that have been engineered to express ACVR2B.
在其他实施方案中,评估ACVR2B表达水平的方法在体内进行。反义寡核苷酸或RNAi剂和任何对照反义寡核苷酸或RNAi剂可以给药于动物(例如表达ACVR2B基因的转基因动物或非人灵长类动物),并且在治疗后从动物收获的组织中评估ACVR2B mRNA或ACVR2B蛋白水平。可替代地或附加地,可以在治疗的动物中评估与ACVR2B表达相关的生物标志物或功能表型。例如,ACVR2B蛋白是组织中ACVR2B mRNA的表达产物。因此,可以在用本发明的反义寡核苷酸或RNAi剂处理的动物中测量ACVR2B蛋白的水平,以评估降低ACVR2B表达的功能功效。In other embodiments, the method of assessing ACVR2B expression levels is performed in vivo. The antisense oligonucleotide or RNAi agent and any control antisense oligonucleotide or RNAi agent can be administered to an animal (e.g., a transgenic animal or non-human primate expressing an ACVR2B gene), and ACVR2B mRNA or ACVR2B protein levels are assessed in tissues harvested from the animal after treatment. Alternatively or additionally, biomarkers or functional phenotypes associated with ACVR2B expression can be assessed in treated animals. For example, ACVR2B protein is the expression product of ACVR2B mRNA in tissues. Therefore, the level of ACVR2B protein can be measured in animals treated with the antisense oligonucleotide or RNAi agent of the invention to assess the functional efficacy of reducing ACVR2B expression.
在某些实施方案中,ACVR2B在细胞中的表达通过本发明的反义寡核苷酸或RNAi剂减少至少40%、至少45%或至少50%。在一些实施方案中,ACVR2B在细胞中的表达通过本发明的反义寡核苷酸或RNAi剂减少至少60%、至少65%、至少70%、至少75%、至少80%或至少85%。在其他实施方案中,ACVR2B在细胞中的表达通过本发明的反义寡核苷酸或RNAi剂减少约90%或更多,例如91%、92%、93%、94%、95%、96%、97%、98%、99%或更多。ACVR2B表达的减少百分比可以通过本文所述的任何方法以及本领域已知的其他方法来测量。In certain embodiments, the expression of ACVR2B in a cell is reduced by at least 40%, at least 45%, or at least 50% by an antisense oligonucleotide or RNAi agent of the invention. In some embodiments, the expression of ACVR2B in a cell is reduced by at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, or at least 85% by an antisense oligonucleotide or RNAi agent of the invention. In other embodiments, the expression of ACVR2B in a cell is reduced by about 90% or more, such as 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99% or more by an antisense oligonucleotide or RNAi agent of the invention. The percentage reduction in ACVR2B expression can be measured by any of the methods described herein and other methods known in the art.
本发明提供了在有需要的患者中减少或抑制ACVR2B基因的表达,从而减少或抑制ACVR2B蛋白的产生的方法,以及治疗或预防与ACVR2B表达或活性相关的疾病或病症的方法。“由ACVR2B表达异常介导的疾病或病症”是指ACVR2B表达水平改变的疾病或病症,或ACVR2B表达表达水平升高与发展该疾病和病症的风险增加相关的病症或病症。在某些实施方案中,本发明的反义寡核苷酸或RNAi剂特别适用于降低ACVR2B的水平。The present invention provides methods for reducing or inhibiting the expression of the ACVR2B gene, thereby reducing or inhibiting the production of ACVR2B protein, in patients in need thereof, as well as methods for treating or preventing diseases or conditions associated with ACVR2B expression or activity. "Diseases or conditions mediated by abnormal expression of ACVR2B" refers to diseases or conditions in which the expression level of ACVR2B is altered, or conditions or conditions in which elevated expression levels of ACVR2B are associated with an increased risk of developing the disease or condition. In certain embodiments, the antisense oligonucleotides or RNAi agents of the present invention are particularly useful for reducing the level of ACVR2B.
可以根据本发明的方法治疗或预防的与ACVR2B表达相关的疾病和病症包括但不限于肌肉萎缩、肌肉营养不良、肥胖、糖尿病、慢性肾脏疾病、急性肾损伤、外伤术后愈合、颌面部肿瘤、妊娠子痫、肝纤维化、动脉粥样硬化、缺血性脑卒中和阿尔茨海默病的疾病。Diseases and conditions associated with ACVR2B expression that can be treated or prevented according to the methods of the present invention include, but are not limited to, muscle atrophy, muscular dystrophy, obesity, diabetes, chronic kidney disease, acute kidney injury, postoperative healing of trauma, maxillofacial tumors, eclampsia during pregnancy, liver fibrosis, atherosclerosis, ischemic stroke, and Alzheimer's disease.
在某些实施方案中,本发明提供了一种用于在需要的患者中减少ACVR2B表达的方法,包括向患者施用本文所述的任何反义寡核苷酸或RNAi剂。优选地,与未接受反义寡核苷酸或RNAi剂的患者中的ACVR2B表达水平相比,或者与施用反义寡核苷酸或RNAi剂之前的患者中ACVR2B表达水平相比,施用反义寡核苷酸或RNAi剂之后,患者细胞中ACVR2B的表达水平降低。在一些实施方案中,在施用本发明的反义寡核苷酸或RNAi剂之后,ACVR2B在患者中的表达减少至少30%、至少35%、至少40%、至少45%、至少50%、至少55%、至少60%、至少65%、至少70%、至少75%、至少80%、至少85%或至少90%,例如91%、92%、93%、94%、95%、96%、97%、98%或99%。ACVR2B表达的减少百分比可以通过本文所述的任何方法以及本领域已知的其他方法来测量。在某些实施方案中,ACVR2B表达减少百分比通过根据本文所述方法评估患者ACVR2B蛋白水平来确定。In certain embodiments, the present invention provides a method for reducing ACVR2B expression in a patient in need thereof, comprising administering to the patient any antisense oligonucleotide or RNAi agent described herein. Preferably, after administration of the antisense oligonucleotide or RNAi agent, the expression level of ACVR2B in the patient's cells is reduced compared to the expression level of ACVR2B in the patient who did not receive the antisense oligonucleotide or RNAi agent, or compared to the expression level of ACVR2B in the patient before administration of the antisense oligonucleotide or RNAi agent. In some embodiments, after administration of the antisense oligonucleotide or RNAi agent of the present invention, the expression of ACVR2B in the patient is reduced by at least 30%, at least 35%, at least 40%, at least 45%, at least 50%, at least 55%, at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least 85% or at least 90%, for example 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99%. The percent reduction in ACVR2B expression can be measured by any of the methods described herein as well as other methods known in the art. In certain embodiments, the percent reduction in ACVR2B expression is determined by assessing the patient's ACVR2B protein levels according to the methods described herein.
在某些实施方案中,需要减少ACVR2B表达的患者是被诊断患有由ACVR2B表达水平异常介导的疾病或有此患病风险的患者。因此,本发明包括一种通过给予本发明的任何反义寡核苷酸或RNAi剂来治疗或预防有需要的患者的由ACVR2B表达水平异常介导的疾病的方法。在一些实施方案中,本发明包括本文所述的任何反义寡核苷酸或RNAi剂在制备用于治疗或预防有需要的患者的由ACVR2B表达水平异常介导的疾病的药物中的用途。在其他实施方案中,本发明提供了用于治疗或预防有需要的患者的由ACVR2B表达水平异常介导的疾病的方法中的ACVR2B靶向反义寡核苷酸或RNAi剂。如上所述,所述由ACVR2B表达水平异常介导的疾病例如是肌肉萎缩、肌肉营养不良、肥胖、糖尿病、慢性肾脏疾病、急性肾损伤、外伤术后愈合、颌面部肿瘤、妊娠子痫、肝纤维化、动脉粥样硬化、缺血性脑卒中和阿尔茨海默病。在一个实施方式中,所述疾病是肌肉萎缩。在一个实施方式中,所述疾病是肌肉营养不良。在一个实施方式中,所述疾病是肥胖。在一个实施方式中,所述疾病是糖尿病。在一个实施方式中,所述疾病是慢性肾脏疾病。在一个实施方式中,所述疾病是急性肾损伤。在一个实施方式中,所述疾病是外伤术后愈合。在一个实施方式中,所述疾病是颌面部肿瘤。在一个实施方式中,所述疾病是妊娠子痫。在一个实施方式中,所述疾病是肝纤维化。在一个实施方式中,所述疾病是动脉粥样硬化。在一个实施方式中,所述疾病是缺血性脑卒中。在一个实施方式中,所述疾病是阿尔茨海默病。In certain embodiments, the patient who needs to reduce ACVR2B expression is a patient diagnosed with a disease mediated by abnormal expression levels of ACVR2B or a patient at risk of such a disease. Therefore, the present invention includes a method for treating or preventing a disease mediated by abnormal expression levels of ACVR2B in a patient in need by administering any antisense oligonucleotide or RNAi agent of the present invention. In some embodiments, the present invention includes the use of any antisense oligonucleotide or RNAi agent described herein in the preparation of a medicament for treating or preventing a disease mediated by abnormal expression levels of ACVR2B in a patient in need. In other embodiments, the present invention provides an ACVR2B-targeted antisense oligonucleotide or RNAi agent in a method for treating or preventing a disease mediated by abnormal expression levels of ACVR2B in a patient in need. As described above, the disease mediated by abnormal expression levels of ACVR2B is, for example, muscle atrophy, muscular dystrophy, obesity, diabetes, chronic kidney disease, acute kidney injury, postoperative healing of trauma, maxillofacial tumors, pregnancy eclampsia, liver fibrosis, atherosclerosis, ischemic stroke and Alzheimer's disease. In one embodiment, the disease is muscle atrophy. In one embodiment, the disease is muscular dystrophy. In one embodiment, the disease is obesity. In one embodiment, the disease is diabetes. In one embodiment, the disease is chronic kidney disease. In one embodiment, the disease is acute kidney injury. In one embodiment, the disease is postoperative healing of trauma. In one embodiment, the disease is a maxillofacial tumor. In one embodiment, the disease is gestational eclampsia. In one embodiment, the disease is liver fibrosis. In one embodiment, the disease is atherosclerosis. In one embodiment, the disease is ischemic stroke. In one embodiment, the disease is Alzheimer's disease.
在某些其他实施方案中,需要减少ACVR2B表达的患者是ACVR2B水平升高的患者。因此,在一些实施方案中,本发明提供了一种通过向患者施用本文所述的任何反义寡核苷酸或RNAi剂来降低有需要的患者的ACVR2B蛋白水平的方法。在一些实施方案中,本发明包括本文所述的任何反义寡核苷酸或RNAi剂在制备用于降低有需要的患者的ACVR2B蛋白水平的药物中的用途。在其他实施方案中,本发明提供了一种用于降低有需要的患者的ACVR2B蛋白水平的方法的ACVR2B靶向反义寡核苷酸或RNAi剂。In certain other embodiments, the patient in need of reduced ACVR2B expression is a patient with elevated ACVR2B levels. Thus, in some embodiments, the present invention provides a method of reducing ACVR2B protein levels in a patient in need thereof by administering to the patient any of the antisense oligonucleotides or RNAi agents described herein. In some embodiments, the present invention includes the use of any of the antisense oligonucleotides or RNAi agents described herein in the preparation of a medicament for reducing ACVR2B protein levels in a patient in need thereof. In other embodiments, the present invention provides an ACVR2B targeted antisense oligonucleotide or RNAi agent for use in a method of reducing ACVR2B protein levels in a patient in need thereof.
在本发明的一些实施方式中,本发明提供降低编码激活素IIB型受体(ACVR2B)基因表达的试剂在制备用于治疗ACVR2B敲低可治疗的疾病或病症的药物中的用途。在优选的实施方式中,所述试剂为反义寡核苷酸和/或RNAi剂。在优选的实施方式中,所述疾病或病症选自肌肉萎缩、肌肉营养不良、肥胖、糖尿病、慢性肾脏疾病、急性肾损伤、外伤术后愈合、颌面部肿瘤、妊娠子痫、肝纤维化、动脉粥样硬化、缺血性脑卒中和阿尔茨海默病。In some embodiments of the invention, the invention provides the use of an agent that reduces the expression of a gene encoding an activin type IIB receptor (ACVR2B) in the preparation of a medicament for treating a disease or condition treatable by ACVR2B knockdown. In a preferred embodiment, the agent is an antisense oligonucleotide and/or an RNAi agent. In a preferred embodiment, the disease or condition is selected from the group consisting of muscular atrophy, muscular dystrophy, obesity, diabetes, chronic kidney disease, acute kidney injury, postoperative healing of trauma, maxillofacial tumors, pregnancy eclampsia, liver fibrosis, atherosclerosis, ischemic stroke and Alzheimer's disease.
因此,在一些实施方式中,本发明提供降低编码激活素IIB型受体(ACVR2B)基因表达的反义寡核苷酸和/或RNAi剂在制备用于治疗选自肌肉萎缩、肌肉营养不良、肥胖、糖尿病、慢性肾脏疾病、急性肾损伤、外伤术后愈合、颌面部肿瘤、妊娠子痫、肝纤维化、动脉粥样硬化、缺血性脑卒中和阿尔茨海默病的疾病或病症的药物中的用途。Therefore, in some embodiments, the present invention provides the use of antisense oligonucleotides and/or RNAi agents that reduce the expression of the gene encoding activin type IIB receptor (ACVR2B) in the preparation of a medicament for treating a disease or condition selected from muscular atrophy, muscular dystrophy, obesity, diabetes, chronic kidney disease, acute kidney injury, postoperative healing of trauma, maxillofacial tumors, eclampsia in pregnancy, liver fibrosis, atherosclerosis, ischemic stroke and Alzheimer's disease.
序列表
Sequence Listing
人ACVR2B,mRNA(SEQ ID NO.1,NCBI登录号NM_001106.4)
Human ACVR2B, mRNA (SEQ ID NO.1, NCBI accession number NM_001106.4)
食蟹猴ACVR2B mRNA(SEQ ID NO.2,NCBI登录号XM_015445674.2)
实施例Cynomolgus monkey ACVR2B mRNA (SEQ ID NO. 2, NCBI accession number XM_015445674.2)
Example
实验方法与材料Experimental methods and materials
靶序列筛选Target sequence screening
ASO和siRNA根据ACVR2B全长mRNA序列设计(NM_001106.4),所有序列均来源于NCBI基因数据库。所有ASO和siRNA设计时保证了与人(Gene ID:93,NM_001106.4,SEQ ID NO.1)及食蟹猴(Gene ID:102118668,XM_015445674.2,SEQ ID NO.2)序列的同源性。ASO and siRNA were designed based on the full-length mRNA sequence of ACVR2B (NM_001106.4), and all sequences were derived from the NCBI gene database. All ASO and siRNA were designed to ensure homology with human (Gene ID: 93, NM_001106.4, SEQ ID NO.1) and cynomolgus monkey (Gene ID: 102118668, XM_015445674.2, SEQ ID NO.2) sequences.
寡核苷酸的合成Oligonucleotide synthesis
寡核苷酸的合成方法与通常的亚磷酰胺固相合成方法无异(均交由苏州贝信生物科技有限公司合成),包括脱保护,偶联,盖帽,氧化或硫化四步反应。以固相载体为起始循环,自3'-5'顺序逐一连接核苷单体。核苷亚磷酰胺单体原料2'-OTBDMS,2'-F RNA,2'-OMe RNA等购自上海兆维科技发展有限公司。固相合成完成后,转移固相载体至离心管中,加入3:1的28%氨水和乙醇溶液在50℃条件下浸泡上述载体16小时,使寡核苷酸从固相载体上裂解至溶液中。离心转移上层清液至另一离心管中,浓缩蒸发干后再次溶于去离子水中,使用C18反向色谱柱纯化,流动相为0.1M TEAA和乙腈。目标寡核苷酸收集后冻干,并经LC-MS鉴定为目标产物,再经UV(260nm)定量。siRNA经由正义链和反义链退火所得。The synthesis method of oligonucleotides is the same as the conventional phosphoramidite solid phase synthesis method (all synthesized by Suzhou Beixin Biotechnology Co., Ltd.), including four steps of deprotection, coupling, capping, oxidation or sulfurization. The solid phase carrier is used as the starting cycle, and the nucleoside monomers are connected one by one from 3'-5'. The raw materials of nucleoside phosphoramidite monomers 2'-OTBDMS, 2'-F RNA, 2'-OMe RNA, etc. were purchased from Shanghai Zhaowei Technology Development Co., Ltd. After the solid phase synthesis is completed, the solid phase carrier is transferred to a centrifuge tube, and a 3:1 28% ammonia and ethanol solution is added to soak the above carrier at 50°C for 16 hours to cleave the oligonucleotide from the solid phase carrier into the solution. The supernatant is transferred to another centrifuge tube by centrifugation, concentrated and evaporated to dryness, and then dissolved in deionized water again, and purified using a C18 reverse chromatographic column with a mobile phase of 0.1M TEAA and acetonitrile. The target oligonucleotide is collected and freeze-dried, and identified as the target product by LC-MS, and then quantified by UV (260nm). siRNA is obtained by annealing the sense strand and the antisense strand.
化合物的溶解Dissolution of compounds
化合物干粉管置于离心机,12,000rpm离心5min,加入适量RNase free去离子水,混匀配置成10μM的储存液,每个化合物分装3管,50μl/管,-20℃冰箱保存。Place the compound dry powder tube in a centrifuge and centrifuge at 12,000 rpm for 5 min. Add an appropriate amount of RNase free deionized water and mix well to prepare a 10 μM storage solution. Each compound is divided into 3 tubes, 50 μl/tube, and stored in a -20°C refrigerator.
反向转染Reverse transfection
化合物稀释,10μM化合物的储存液用Opti-MEM减血清培养基稀释至使用浓度的12倍,静置备用。转染试剂稀释,按照48.5:1.5的比例用Opti-MEM减血清培养基稀释转染试剂,轻柔混匀后室温静置15min。转染复合物制备,将稀释好的化合物和转染试剂等体积混匀,室温静置15min。每孔加入20μl转染复合物于96孔细胞板中。接种细胞,选取细胞融合度80%左右的A-673细胞,胰酶消化,用去青链霉素的完全培养基重悬细胞,计数。制成150,000细胞/ml浓度的细胞悬液,每孔加入100μl细胞悬液于含有转染复合物的细胞板中。细胞于37℃5% CO2培养箱内培养24hrs。Compound dilution: dilute the stock solution of 10μM compound with Opti-MEM reduced serum medium to 12 times the working concentration and let it stand for use. Transfection reagent dilution: dilute the transfection reagent with Opti-MEM reduced serum medium at a ratio of 48.5:1.5, mix gently and let it stand at room temperature for 15 minutes. Transfection complex preparation: mix the diluted compound and transfection reagent in equal volumes and let it stand at room temperature for 15 minutes. Add 20μl of transfection complex to each well in a 96-well cell plate. Inoculate cells: select A-673 cells with a cell confluence of about 80%, trypsinize, resuspend the cells in complete medium without penicillin and streptomycin, and count. Prepare a cell suspension with a concentration of 150,000 cells/ml, and add 100μl of cell suspension to each well in the cell plate containing the transfection complex. The cells were cultured in a 37℃ 5% CO 2 incubator for 24hrs.
细胞裂解Cell lysis
按照下表配制细胞裂解液
Prepare cell lysis buffer according to the following table:
取出细胞培养板,弃去培养基,用预冷的DPBS洗涤细胞一次。每孔加入50μl细胞裂解液,吹打5-10次混匀,室温静置10min。再向每孔加入5μl细胞裂解终止液,吹打5-10次混匀,室温等待2min终止反应。细胞板放置在冰上备用。Remove the cell culture plate, discard the culture medium, and wash the cells once with pre-cooled DPBS. Add 50μl of cell lysis solution to each well, pipette 5-10 times to mix, and let stand at room temperature for 10 minutes. Then add 5μl of cell lysis termination solution to each well, pipette 5-10 times to mix, and wait for 2 minutes at room temperature to terminate the reaction. Place the cell plate on ice for later use.
实时荧光定量PCR检测Real-time fluorescence quantitative PCR detection
定量PCR反应体系
Quantitative PCR reaction system
按照上表配制定量PCR反应体系,加入9μl于384孔板中。加入1μl细胞裂解液作为模板。按照下表程序完成PCR扩增反应。
Prepare quantitative PCR reaction system according to the table above, add 9μl to a 384-well plate. Add 1μl cell lysate as template. Complete PCR amplification reaction according to the procedure in the table below.
数据分析Data analysis
采用相对定量PCR方法(2-ΔΔCT)分析基因的相对表达量。The relative expression of genes was analyzed by relative quantitative PCR (2 -ΔΔCT ).
为了评价ASO化合物在A673细胞系中对ACVR2B mRNA的体外抑制活性,对设计的ASO化合物进行体外功能学评价,结果见表3。In order to evaluate the in vitro inhibitory activity of ASO compounds on ACVR2B mRNA in A673 cell line, the designed ASO compounds were subjected to in vitro functional evaluation. The results are shown in Table 3.
表3.ASO化合物在A673细胞系中对ACVR2B mRNA的体外抑制活性
Table 3. In vitro inhibitory activity of ASO compounds on ACVR2B mRNA in A673 cell line
为了评价siRNA化合物在A673细胞系中对ACVR2B mRNA的体外抑制活性,对设计的siRNA进行体外功能学评价,结果见表4。In order to evaluate the in vitro inhibitory activity of siRNA compounds on ACVR2B mRNA in A673 cell line, the designed siRNA was subjected to in vitro functional evaluation. The results are shown in Table 4.
表4.siRNA化合物在A673细胞系中对ACVR2B mRNA的体外抑制活性
Table 4. In vitro inhibitory activity of siRNA compounds against ACVR2B mRNA in A673 cell line
为了评价siRNA化合物在A673细胞系中对ACVR2B mRNA的体外抑制活性,对设计的siRNA进行体外功能学评价,结果见表5。In order to evaluate the in vitro inhibitory activity of siRNA compounds on ACVR2B mRNA in A673 cell line, the designed siRNA was subjected to in vitro functional evaluation. The results are shown in Table 5.
表5 siRNA化合物在A673细胞系中对ACVR2B mRNA的体外抑制活性
Table 5 In vitro inhibitory activity of siRNA compounds against ACVR2B mRNA in A673 cell line
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