WO2025031098A1 - Sortilin 1-specific nanoantibody, recombinant aav containing same, and use - Google Patents
Sortilin 1-specific nanoantibody, recombinant aav containing same, and use Download PDFInfo
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- WO2025031098A1 WO2025031098A1 PCT/CN2024/104931 CN2024104931W WO2025031098A1 WO 2025031098 A1 WO2025031098 A1 WO 2025031098A1 CN 2024104931 W CN2024104931 W CN 2024104931W WO 2025031098 A1 WO2025031098 A1 WO 2025031098A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
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- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
Definitions
- the present invention relates to a nano antibody specific for sortilin 1, a recombinant AAV containing the nano antibody and application thereof, belonging to the field of biotechnology.
- Sortilin acts as a cellular receptor or co-receptor, mediating the targeted transport of different proteins into the cell.
- the N-terminus of sortilin 1 is located in the extracellular region, and the C-terminus is located in the intracellular region, connecting its extracellular and intracellular regions through a transmembrane structure.
- Sortilin 1 has a wide distribution on the cell membrane, but can also be found in the endoplasmic reticulum, Golgi apparatus, and early endocytic vesicles inside the cell.
- Sortilin 1 is widely expressed in a variety of tissues and organs, especially in the nervous system, where the expression level of sortilin 1 is high. It is expressed in multiple regions of the brain, including the cortex, hippocampus, striatum, and cerebellum. In addition, sortilin 1 is also expressed in multiple tissues and organs such as the heart, liver, lung, kidney, intestine, and immune system. Sortilin 1 plays an important role in intracellular protein transport, neural development, and metabolic regulation. First, Sortilin 1 is involved in the localization and transport of intracellular proteins.
- Sortilin 1 plays an important role in the nervous system. It is involved in the growth and development regulation of neurons and is related to neurodegenerative diseases. Sortilin 1 interacts with multiple signaling pathways in neurons to regulate cell survival, apoptosis and differentiation processes. It is also closely related to neural functions such as synaptic transmission, synaptic plasticity and memory formation. In addition, Sortilin 1 also plays an important role in metabolic regulation. It is involved in cholesterol metabolism and insulin release regulation. It regulates cholesterol endocytosis and transport by binding to low-density lipoprotein receptor-related protein (LRP); in pancreatic islet cells, Sortilin 1 is involved in the maturation and secretion of insulin granules.
- LRP low-density lipoprotein receptor-related protein
- Sort1 antibodies Tumor treatment is one aspect of the clinical application research of Sort1 antibodies.
- sortin 1 plays an important role in tumorigenesis.
- sortin 1 can affect the secretome of cancer cells, thereby affecting the fat generation process and the energy supply required for cancer cell proliferation.
- overexpression of Sort1 protein has been found in refractory solid tumor cancers including prostate cancer, ovarian cancer, triple-negative breast cancer, skin cancer, lung cancer, colorectal cancer, head and neck cancer, and pancreatic cancer; and the higher the expression level of Sort1, the worse the prognosis of the related disease.
- anti-Sort1 monoclonal antibodies with effector functions can efficiently target cancer cells with high expression of Sort1, and activate immune cells to specifically eliminate lesions through processes such as antibody-dependent cell-mediated cytotoxicity (ADCC); or conjugate antibody molecules with killing molecules such as chemotherapy drugs and radioactive isotopes, so that these drugs enter cancer cells with high expression of Sort1 through antibody-mediated endocytosis, thereby targetedly killing these refractory cancer cells.
- ADCC antibody-dependent cell-mediated cytotoxicity
- chemotherapy drugs and radioactive isotopes a peptide molecule targeting Sort1.
- the peptide drug conjugate (PDC) named TH1902 has entered multiple clinical trials for solid tumors. Early clinical results show that the peptide drug conjugate can slow disease progression, increase immune cell infiltration, and inhibit angiogenesis, etc., showing good effectiveness.
- Progranulin is an extracellular secretory protein composed of 588 amino acids. It is widely distributed in the human body, especially in tissues and cells such as the central nervous system, immune system, endocrine system and kidneys. It plays an important role in inflammation regulation, neuroprotection and tumor development. In the process of neuroprotection and neurodevelopment, progranulin can promote the growth, differentiation and survival of neurons, and participate in synapse formation and neurotransmission regulation.
- progranulin may lead to an increase in inflammatory response, induce toxic damage to neurons, interfere with neuronal growth and the formation of synaptic connections, and lead to neural network dysfunction. Progranulin deficiency may also lead to abnormal autophagy and protein metabolism disorders, further affecting cell function.
- Sortilin 1 is one of the main degradation pathways of progranulin: the extracellular domain of Sortilin 1 binds to progranulin, and the endocytosis mediated by Sortilin 1 brings progranulin from the outside of the cell into the inside of the cell. By binding to vesicles and lysosomes, Sortilin 1 promotes progranulin to enter the degradation pathway, thereby reducing the concentration of progranulin outside the cell. The decrease in the level of progranulin can lead to an increase in inflammatory response, induce toxic damage to neurons, interfere with neuronal growth and the formation of synaptic connections, and lead to neural network dysfunction.
- inhibiting the function of Sortilin 1 can reduce the degradation of progranulin, thereby increasing the level of progranulin inside and outside the cell.
- the function of Sortilin 1 is abnormal or the expression level of Sortilin 1 changes, it will lead to abnormal changes in the level of progranulin.
- the abnormal degradation of progranulin can be prevented, thereby increasing the available amount of progranulin.
- neurodegenerative diseases such as frontotemporal dementia (FTD), amyotrophic lateral sclerosis (ALS), Parkinson's disease (PD) and Alzheimer's disease (AD)
- the reduction of progranulin levels is associated with the occurrence and progression of the disease. Therefore, inhibiting the function of sortilin 1 to increase the level of progranulin may help restore the physiological function of progranulin, thereby having therapeutic potential for FTD, ALS, PD, AD and other related diseases.
- antibodies to inhibit the function of sortilin 1 is a potential strategy to achieve the goal of increasing the level of progranulin.
- antibodies can specifically bind to sortilin 1 and affect the binding of progranulin to sortilin 1, thereby blocking the degradation pathway of progranulin. This strategy is expected to increase the biological activity and functional expression of progranulin, which may have potential benefits for the treatment of related diseases.
- Many pharmaceutical companies and biotechnology companies around the world, including Lundbeck, Sanofi, Takeda and GSK have invested in the research and development of sortilin 1 antibodies.
- sortilin 1 antibodies have therapeutic potential for a variety of neurodegenerative diseases.
- sortilin 1 antibody has been approved for marketing worldwide, so there is still a need to develop new, significantly differentiated sortilin 1 antibodies that are more suitable for clinical applications.
- nanobody can more easily pass through tissue barriers and increase the local concentration of therapeutic drugs due to its small size and good permeability. Due to the small size and the structure of a single variable domain, the risk of nanobody triggering an immune response in the human body is relatively low, which reduces the immune-related problems caused by patients using nanoantibodies and increases their acceptability in long-term treatment. Nanobodies have good environmental tolerance, stable conformation and are easy to synthesize. These unique properties make nanobodies have unique application value in disease diagnosis and targeted therapy.
- nanoantibody molecules are too small, nanoantibodies cannot be retained by the blood during glomerular filtration and are easily metabolized and cleared in the body, resulting in a very short half-life of nanoantibodies after administration, and they cannot maintain effective drug concentrations in the body, thus affecting the effect and feasibility of their widespread application.
- antibody experts have adopted a variety of methods, such as polyethylene glycol modification, engineered Fc fragment fusion, antibody fragment splicing, and other fusion protein splicing.
- the present invention provides an anti-sortilin 1 nanobody and its application, aiming to provide a variety of sortilin 1 antibodies that are significantly differentiated from the current sortilin 1 monoclonal antibody AL001 and have better clinical application prospects.
- the antibodies of the present invention have broad biological and clinical application values, and their applications involve diagnosis and treatment of diseases related to sortilin 1, basic medical research, biological research and other fields.
- the first object of the present invention is to provide a sortilin 1-specific nanobody, wherein the heavy chain variable region of the nanobody comprises complementary determining regions CDR1, CDR2, and CDR3, and the complementary determining regions comprise any combination of the following or a sequence with a homology of not less than 90% thereto:
- the present invention includes those molecules having antibody heavy chain variable regions with CDRs, as long as their CDRs have more than 90% (preferably more than 95%, optimally more than 98%, such as 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%) homology with the above-mentioned CDR sequences.
- sequence with a homology of not less than 90% is obtained by amino acid substitution of CDR1, CDR2 and/or CDR3, and the amino acid substitution is selected from one or more of the following:
- Arginine is replaced by lysine, glutamine or asparagine,
- Asparagine is replaced by glutamine, histidine, lysine or arginine,
- Glycine is replaced by proline or alanine
- Histidine is replaced by asparagine, glutamine, lysine or arginine,
- isoleucine is replaced by leucine, valine, methionine, alanine or phenylalanine,
- Leucine is replaced by isoleucine, valine, methionine, alanine or phenylalanine,
- Lysine is replaced by arginine, glutamine or asparagine,
- Methionine is replaced by leucine, phenylalanine or isoleucine,
- Phenylalanine is replaced by leucine, valine, isoleucine, alanine or tyrosine,
- Proline is replaced by alanine or glycine
- Tyrosine is replaced by tryptophan, phenylalanine, threonine or serine,
- Valine is replaced by isoleucine, leucine, methionine, phenylalanine or alanine.
- variable region of the nanobody includes framework regions FR1, FR2, FR3, and FR4, and a complementary determining region is arranged between two adjacent framework regions, that is, CDR1, CDR2, and CDR3 are separated by framework regions FR1, FR2, FR3, and FR4. Therefore, FR1, CDR1, FR2, CDR2, FR3, CDR3, and FR4 are arranged on the nanobody in sequence.
- the framework region includes any one of the following or a sequence having a homology of not less than 90% thereto:
- the nanoantibody contains a sequence as shown in any one of SEQ ID NO.148-SEQ ID NO.156 and SEQ ID NO.165.
- a second object of the present invention is to provide a polynucleotide encoding the above-mentioned Nanobody.
- the third object of the present invention is to provide a recombinant adeno-associated virus (AAV) expression vector containing the above-mentioned polynucleotide and used for endogenously expressing anti-sortilin 1 nanobody.
- AAV adeno-associated virus
- the recombinant expression vector is an optimized recombinant adeno-associated virus vector, which is used to increase the expression level of the recombinant adenovirus endogenously expressed nanobody.
- the expression elements contained therein include but are not limited to: a promoter and a polyA tail required for the gene expression unit, and a signal peptide may also be set before the polynucleotide.
- the recombinant expression vector contains a CMV promoter or a CAG promoter (including a CMV enhancer and a chicken ⁇ -actin promoter), BM40 signal peptide, polynucleotide and SV40 polyA tail, and does not contain introns, the CAG promoter and BM40 signal peptide are located upstream of the polynucleotide, and the SV40 polyA tail is located downstream of the polynucleotide.
- a CMV promoter or a CAG promoter including a CMV enhancer and a chicken ⁇ -actin promoter
- BM40 signal peptide polynucleotide
- the SV40 polyA tail is located downstream of the polynucleotide.
- the recombinant adeno-associated virus vector contains an inverted terminal repeat sequence (ITR) for AAV virus packaging, and the inverted terminal repeat sequence is connected to the upstream of the CAG promoter and the downstream of the SV40 polyA tail, respectively, and the two ITRs are exactly the same but in opposite directions.
- ITR inverted terminal repeat sequence
- the recombinant vector is subsequently packaged by the adeno-associated virus to produce a related gene therapy product.
- sequence of the CAG promoter is shown in SEQ ID NO.169
- sequence of the BM40 signal peptide is shown in SEQ ID NO.170
- amino acid sequence encoded by it is shown in SEQ ID NO.171
- sequence of the SV40 polyA tail is shown in SEQ ID NO.172
- sequence of the inverted terminal repeat sequence is shown in SEQ ID NO.173.
- adeno-associated viruses used to express anti-sortilin 1 nanobodies in vivo can be selected from a variety of viral serotypes, including but not limited to AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV12, AAVrh10, AAVrh20, AAVrh32, AAVrh33, AAVrh34, AAVrh39, AAVrh43, AAVrh51, AAVrh52, AAVrh53, AAVrh58, AAVrh61, AAVrh64 and other commonly used serotypes, as well as other engineered adeno-associated virus serotypes.
- the fourth object of the present invention is to provide a host cell containing the above recombinant expression vector.
- the host cell may be a prokaryotic cell or a eukaryotic cell, such as a plant cell, an animal cell, a microorganism, and the like.
- a fifth object of the present invention is to provide a monovalent antibody, a bivalent antibody, a multivalent antibody or a recombinant protein containing the above-mentioned Nanobody.
- the recombinant protein contains
- the tag sequence includes an Fc tag, an HA tag or a 6xHis tag, etc.
- a fusion protein formed with an Fc fragment has a structure from the N-terminus to the C-terminus as shown in Formula Ia or Ib:
- A is the above-mentioned anti-sortilin 1 nanobody
- B is the Fc fragment of IgG
- L is no or a flexible linker.
- the flexible linker is a peptide linker, and more preferably, the peptide linker has 1-20 amino acids.
- the Fc fragment of IgG includes the Fc fragment of human IgG or an engineered mutant thereof, and the Fc fragment of IgG is selected from the Fc fragment of IgG1, IgG2, IgG3, IgG4 or a combination thereof.
- the sixth object of the present invention is to provide an antibody-drug conjugate (ADC) containing the above-mentioned nanoantibody.
- the antibody drug conjugate contains:
- Cytotoxic payloads are highly active drugs after being hydrolyzed and cleaved, and can effectively kill target cells or inhibit the function of target cells.
- cytotoxic payloads include a variety of DNA-damaging drugs, microtubule inhibitors, cytokines, radionuclides, or RNA payloads such as siRNA and miRNA.
- Linkers used to link antibodies and toxic loads. When the antibody-drug conjugate reaches the cell, the ADC enters the cell through endocytosis, and the connection between the linker and the cytotoxic load is cut by hydrolysis or other means, thereby releasing the cytotoxic substance to enable it to perform its function.
- linkers There are two types of linkers: cleavable linkers and non-cleavable linkers.
- the seventh object of the present invention is to provide the use of the above-mentioned nanobodies, polynucleotides, recombinant expression vectors, host cells, monovalent antibodies, bivalent antibodies, multivalent antibodies, recombinant proteins or antibody-drug conjugates in the preparation of diagnostic, preventive or therapeutic products.
- the form of the product includes but is not limited to medicaments, reagents, test plates, kits, etc.
- the product is used to detect the molecular level of sortilin 1, target cells with high expression of sortilin 1, inhibit the function of sortilin 1 or increase the level of progranulin (in vitro or in vivo), specifically, to block the interaction between progranulin and sortilin 1.
- various pharmaceutical carriers can be used to deliver nanobodies in vivo, such as the strategy of expressing sortilin 1 nanobodies using AAV viral vectors or LNPs, for endogenous expression of sortilin 1 nanobodies in vivo.
- the detection includes flow cytometry, cell immunofluorescence detection, enzyme-linked immunosorbent assay (ELISA) detection, etc.
- the drug is a drug for preventing or treating tumors, and can be used to prevent or treat various solid tumors and non-solid tumors, such as colon cancer, liver cancer, lung cancer, breast cancer, ovarian cancer, endometrial cancer, prostate cancer, kidney cancer, malignant melanoma, gallbladder cancer, brain glioma, pancreatic cancer, etc.
- the drug can also be a drug for preventing or treating central nervous system diseases, such as neurodegenerative diseases.
- the diseases that can be prevented or treated by the drug include but are not limited to: frontotemporal dementia (FTD), amyotrophic lateral sclerosis (ALS), Alzheimer's disease (AD) and Parkinson's disease (PD), depression, neuropsyciatric disorder, vascular dementia, seizures, retinal dystrophy, age-related macular degeneration, glaucoma, traumatic brain injury, aging, wound healing, stroke, arthritis, atherosclerosis, etc.
- the inventors have successfully obtained multiple anti-human sortilin 1 nanobodies through extensive and in-depth research and a large number of screenings.
- the present invention uses human sortilin 1 extracellular segment antigen protein to immunize camels to obtain a high-quality immune nanoantibody gene library.
- the sortilin 1 protein molecule is coupled to an ELISA plate, and the immune nanoantibody gene library (camel heavy chain antibody phage display gene library) is screened using phage display technology in this form of antigen, thereby obtaining a sortilin 1-specific nanoantibody gene.
- the antibody of the present invention can block the interaction between sortilin 1 and granulin precursor on the cell surface, with high affinity and strong specificity; it can effectively bind to sortilin 1 protein, and its binding activity is similar to that of the control antibody AL001.
- relevant experimental results show that the multiple nanoantibodies obtained in the present invention can significantly increase the level of granulin precursor in the culture medium of U251 cells, and the ability to increase the level of extracellular granulin precursor is close to or better than the control antibody AL001, and has the potential to treat a variety of neurodegenerative diseases.
- the present invention screens and optimizes the elements (including promoters, introns, signal peptides, polyA, etc.) on the recombinant expression vector of nano antibodies to obtain a vector that can improve the expression level of nano antibodies.
- the construction process of the expression vector is simple, and it can effectively improve the expression level of nano antibodies in mammals, helping nano antibodies to be expressed continuously and efficiently in vivo, thereby solving the problem of low in vivo concentration due to short half-life currently faced by nano antibody drugs.
- the AAV delivery gene based on this expression element combination has an expression level that is more than 10 times higher than other preferred combinations, more than 20 times higher than commonly used expression element combinations, and can maintain a high level of nano antibodies in serum for a long time.
- the present invention uses an optimized AAV vector to highly express anti-sortin 1 nanobody in vivo, successfully solving the problem of short half-life of nanobody drugs when administered exogenously, and achieving effective pharmacokinetic function.
- Animal in vivo experiments have shown that a single AAV injection can continuously increase the level of progranulin in the serum and cerebrospinal fluid of humanized disease models.
- the present invention has the potential to be developed into a new gene therapy drug for the treatment of a variety of neurodegenerative diseases.
- FIG. 1 is the SDS-PAGE detection result of the recombinant protein in Example 1.
- Figure 2 shows the situation of human Sortilin 1 binding nanoantibodies in bacterial periplasmic space extracts identified by ELISA after amplification and induction of expression of 576 monoclonal clones randomly selected from the Sortilin 1 positive library after three rounds of screening.
- FIG. 3 shows the ELISA identification results of 26 anti-human sortilin 1 nanobodies competitively inhibiting the binding of human sortilin 1 to its ligand granule protein precursor.
- Figures 4 to 9 are the results of flow cytometry detection of the ability of different antibodies to bind to cell surface sortilin 1.
- FIG10 shows the results of Nb426 cross-recognition of sort1 from different species.
- Figures 11-16 are the results of the Gator affinity assay experiment for detecting the binding of nanobodies to human sortilin 1 recombinant protein.
- Figure 17 shows the results of the Gator Epitope Binning experiment to detect multiple nanoantibodies binding to human Sortilin 1 recombinant protein.
- FIG18 shows the results of immunofluorescence observation of the internalization of nanoantibodies after binding to cell surface Sort1 at different temperatures.
- Figure 19 shows the ELISA test results of the level of progranulin in the cell culture medium after U251 cells were treated with nanoantibodies.
- Figure 20 shows the results of detecting the level of progranulin in the cell culture medium after U251 cells were treated with different concentrations of sortilin 1 antibodies (including nanobodies Nb171, Nb184 and AL001).
- FIG. 21 is a schematic diagram of the construction of humanized mice expressing sort1 protein.
- Figure 22 shows the changes in the levels of progranulin in mouse serum after intravenous injection of different anti-sortilin-1 nanobodies.
- Figure 23 is a pscAAV-RNY20-VHH plasmid map.
- FIG. 24 shows the results of Progranulin detection in serum after injection of AAV encoding Sort1 nanobody and AL001.
- FIG. 25 shows the results of the detection of Progranulin levels in the cerebrospinal fluid of mice 45 days after administration.
- the terms "antibody of the present invention”, “antibodies of the present invention”, “anti-sortilin 1 Nanobody of the present invention”, “sortilin 1 Nanobody of the present invention”, “anti-sortilin 1 Nanobody”, and “sortilin 1 Nanobody” have the same meaning and can be used interchangeably, all referring to Nanobodies that specifically recognize and bind to sortilin 1 (including human sortilin 1).
- the term "antibody” or “immunoglobulin” refers to an IgG heterotetrameric glycoprotein of about 150,000 daltons with identical structural features, which consists of two identical light chains (L) and two identical heavy chains (H). Each light chain is connected to the heavy chain by a covalent disulfide bond, while the number of disulfide bonds between the heavy chains of different immunoglobulin isotypes varies. Each heavy and light chain also has regularly spaced intrachain disulfide bonds. One end of each heavy chain has a variable region (VH) followed by multiple constant regions.
- VH variable region
- each light chain has a variable region (VL) and the other end has a constant region; the constant region of the light chain is opposite to the first constant region of the heavy chain, and the variable region of the light chain is opposite to the variable region of the heavy chain.
- VL variable region
- Specific amino acid residues form an interface between the variable regions of the light and heavy chains.
- single domain antibody VHH
- non-body single domain antibody
- sdAb single domain antibody
- multivalent refers to a fusion protein comprising multiple anti-sortilin-1 Nanobody VHH chains, anti-sortilin-1 Nanobody, or anti-sortilin-1 Nanobody.
- variable means that some parts of the variable region in the antibody are different in sequence, which forms the binding and specificity of various specific antibodies to their specific antigens.
- variability is not evenly distributed throughout the variable region of the antibody. It is concentrated in three segments called complementarity determining regions (CDRs) or hypervariable regions in the variable regions of the light chain and heavy chain.
- CDRs complementarity determining regions
- FRs framework regions
- the variable regions of natural heavy and light chains each contain four FR regions, which are roughly in a beta-folded configuration and are connected by three CDRs that form a connecting loop, and in some cases can form a partial beta-folded structure.
- the CDRs in each chain are closely together through the FR region and together with the CDRs of the other chain form the antigen binding site of the antibody (see Kabat et al., NIH Pub1. No. 91-3242, Volume I, pp. 647-669 (1991)).
- the constant region is not directly involved in the binding of the antibody to the antigen, but they exhibit different effector functions, such as participating in the antibody-dependent cytotoxicity of the antibody.
- immunoconjugates and fusion expression products include: drugs, toxins, cytokines (cytokines), radionuclides, enzymes and other diagnostic or therapeutic molecules and antibodies or fragments thereof of the present invention.
- the present invention also includes cell surface markers or antigens bound to the anti-Sort1 nanobody or fragments thereof.
- variable region and “complementarity determining region” are used interchangeably.
- antibodies of the present invention are used interchangeably, and all refer to polypeptides that specifically bind to Sortilin 1, such as proteins or polypeptides having a heavy chain variable region. They may or may not contain an initial methionine.
- variable region This segment is divided into four framework regions (FR).
- FR framework regions
- the amino acid sequences of the four FRs are relatively conservative and do not directly participate in the binding reaction. These CDRs form a ring structure, and the ⁇ -folds formed by the FRs in between are close to each other in spatial structure.
- the CDRs on the heavy chain and the CDRs on the corresponding light chain constitute the antigen binding site of the antibody.
- the amino acid sequences of antibodies of the same type can be compared to determine which amino acids constitute the FR or CDR region.
- the present invention includes not only complete antibodies, but also fragments of antibodies with immunological activity or fusion proteins formed by antibodies and other sequences. Therefore, the present invention also includes fragments, derivatives and analogs of the antibodies.
- fragment refers to polypeptides that substantially retain the same biological function or activity as the antibodies of the present invention.
- the polypeptide fragments, derivatives or analogs of the present invention may be: (i) polypeptides in which one or more conservative or non-conservative amino acid residues (preferably conservative amino acid residues) are substituted, and such substituted amino acid residues may or may not be encoded by the genetic code, or (ii) polypeptides having a substitution group in one or more amino acid residues, or (iii) polypeptides formed by fusion of a mature polypeptide with another compound (such as a compound that prolongs the half-life of the polypeptide, such as polyethylene glycol) or a polypeptide (such as a polypeptide that prolongs the half-life, such as a nanobody against serum albumin, or an engineered antibody Fc domain), or (iv) polypeptides formed by fusion of an additional amino acid sequence to this
- the antibody of the present invention refers to a polypeptide having sortilin 1 binding activity and comprising the above CDR region.
- the term also includes variant forms of polypeptides comprising the above CDR region and having the same function as the antibody of the present invention. These variant forms include (but are not limited to): one or more (usually 1-50, preferably 1-30, more preferably 1-20, and most preferably 1-10) amino acid deletions, insertions and/or substitutions, and addition of one or several (usually within 20, preferably within 10, and more preferably within 5) amino acids at the C-terminus and/or N-terminus.
- amino acids with similar or similar properties are substituted, the function of the protein is usually not changed.
- adding one or several amino acids at the C-terminus and/or N-terminus usually does not change the function of the protein.
- the term also includes active fragments and active derivatives of the antibodies of the present invention.
- Variant forms of the polypeptide include: homologous sequences, conservative variants, allelic variants, natural mutants, induced mutants, proteins encoded by DNA that can hybridize with the encoding DNA of the antibody of the present invention under high or low stringency conditions, and polypeptides or proteins obtained using antiserum against the antibody of the present invention.
- the present invention also provides other polypeptides, such as fusion proteins comprising antibodies or fragments thereof.
- the present invention also includes fragments of antibodies of the present invention.
- the fragment has at least about 50 consecutive amino acids of the antibody of the present invention, preferably at least about 50 consecutive amino acids, more preferably at least about 80 consecutive amino acids, and most preferably at least about 100 consecutive amino acids.
- “conservative variants of the antibodies of the present invention” refer to polypeptides formed by replacing at most 10, preferably at most 8, more preferably at most 5, and most preferably at most 3 amino acids with amino acids having similar or similar properties compared to the amino acid sequence of the antibodies of the present invention. These conservative variant polypeptides are preferably generated according to the amino acid substitutions described above.
- the present invention also provides a polynucleotide molecule encoding the above-mentioned antibody or its fragment or its fusion protein.
- the polynucleotide of the present invention can be in the form of DNA or RNA.
- the DNA form includes cDNA, genomic DNA or artificially synthesized DNA.
- the DNA can be single-stranded or double-stranded.
- the DNA can be a coding strand or a non-coding strand.
- the polynucleotide encoding the mature polypeptide of the present invention includes: a coding sequence encoding only a mature polypeptide; a coding sequence of a mature polypeptide and various additional coding sequences; a coding sequence of a mature polypeptide (and optional additional coding sequences) and non-coding sequences.
- polynucleotide encoding a polypeptide may include a polynucleotide encoding the polypeptide, or may include additional coding and/or non-coding sequences.
- the present invention also relates to polynucleotides that hybridize with the above-mentioned sequences and have at least 90%, preferably at least 95%, and more preferably at least 98% identity between the two sequences.
- the present invention particularly relates to polynucleotides that can hybridize with the polynucleotides of the present invention under stringent conditions.
- stringent conditions refer to: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2 ⁇ SSC, 0.1% SDS, 60°C; or (2) the addition of denaturing agents during hybridization, such as 50% (v/v) formamide, 0.1% calf serum/0.1% Ficoll, 42°C, etc.; or (3) hybridization occurs only when the identity between the two sequences is at least 90%, preferably at least 95%.
- the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide.
- the full-length nucleotide sequence of the antibody of the present invention or its fragment can usually be obtained by PCR amplification, recombination or artificial synthesis.
- a feasible method is to synthesize the relevant sequence by artificial synthesis, especially when the fragment length is short.
- a fragment with a very long sequence can be obtained by synthesizing multiple small fragments first and then connecting them.
- the coding sequence of the heavy chain and the expression tag (such as 6His) can be fused together to form a fusion protein.
- biomolecules nucleic acids, proteins, etc.
- the biomolecules involved in the present invention include biomolecules in isolated form.
- the DNA sequence encoding the protein of the present invention (or its fragment, or its derivative) can be obtained completely by chemical synthesis.
- the DNA sequence can then be introduced into various existing DNA molecules (or vectors) and cells known in the art.
- mutations can also be introduced into the protein sequence of the present invention by chemical synthesis.
- the present invention also relates to vectors comprising the above-mentioned appropriate DNA sequence and appropriate promoter or control sequence. These vectors can be used to transform appropriate host cells to enable them to express proteins.
- Host cells can be prokaryotic cells, such as bacterial cells; or lower eukaryotic cells, such as yeast cells; or higher eukaryotic cells, such as mammalian cells.
- prokaryotic cells such as bacterial cells
- lower eukaryotic cells such as yeast cells
- higher eukaryotic cells such as mammalian cells.
- Representative examples include: Escherichia coli, Streptomyces; bacterial cells of Salmonella typhimurium; fungal cells such as yeast; insect cells of Drosophila S2 or Sf9; animal cells such as CHO, COS7, 293 cells, etc.
- Transformation of host cells with recombinant DNA can be carried out using conventional techniques well known to those skilled in the art.
- the host is a prokaryotic organism such as Escherichia coli
- competent cells that can absorb DNA can be harvested after the exponential growth phase and treated with the CaCl2 method, the steps used are well known in the art.
- Another method is to use MgCl2.
- transformation can also be carried out by electroporation.
- the following DNA transfection methods can be selected: calcium phosphate coprecipitation method, conventional mechanical methods such as microinjection, electroporation, liposome packaging, etc.
- the obtained transformant can be cultured by conventional methods to express the polypeptide encoded by the gene of the present invention.
- the culture medium used in the culture can be selected from various conventional culture media. Culture is carried out under conditions suitable for the growth of the host cells. After the host cells grow to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
- the recombinant polypeptide in the above method can be expressed in the cell, on the cell membrane, or secreted outside the cell. If necessary, the recombinant protein can be separated and purified by various separation methods using its physical, chemical and other properties. These methods are well known to those skilled in the art. Examples of these methods include but are not limited to: conventional renaturation treatment, treatment with a protein precipitant (salting out method), centrifugation, osmotic sterilization, ultra-treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion exchange chromatography, high performance liquid chromatography (HPLC) and other various liquid chromatography techniques and combinations of these methods.
- the antibodies of the invention may be used alone or in combination or conjugated to a detectable marker (for diagnostic purposes), a therapeutic agent, a PK (protein kinase) modifying moiety, or any combination of these.
- Detectable labels for diagnostic purposes include, but are not limited to, fluorescent or luminescent labels, radioactive labels, MRI (magnetic resonance imaging) or CT (computed tomography) contrast agents, or enzymes capable of producing a detectable product.
- Therapeutic agents that can be combined or coupled with the antibodies of the present invention include, but are not limited to: 1. radionuclides; 2. biological toxins, including a variety of DNA damaging drugs, or microtubule inhibitors; 3. cytokines such as IL-2, etc.; 4. gold nanoparticles/nanorods; 5. viral particles; 6. liposomes; 7. nanomagnetic particles; 8. prodrug activating enzymes (e.g., DT-diaphorase (DTD) or biphenyl hydrolase-like protein (BPHL)), etc.
- DTD DT-diaphorase
- BPHL biphenyl hydrolase-like protein
- Sortilin 1 is a cell membrane receptor protein belonging to the VPS10P superfamily. It plays an important role in intracellular protein transport, neural development and metabolic regulation. Sortilin 1 can bind to a variety of proteins and ligands, such as nerve growth factor, neurotrophic factor, glycoprotein, etc., and bring them from the cell surface into the endoplasmic reticulum and transport vesicle system through endocytosis, participating in their localization and transport process. Sortilin 1 interacts with multiple signaling pathways in neurons. It participates in the growth and development regulation of neurons and is also closely related to neural functions such as synaptic transmission, synaptic plasticity and memory formation. Sortilin 1 plays an important role in the nervous system.
- Sortilin 1 is related to neurodegenerative diseases.
- Sortilin 1 is overexpressed in cancers such as prostate cancer, ovarian cancer, triple-negative breast cancer, skin cancer, lung cancer, endometrial cancer, colorectal cancer and pancreatic cancer, and helps the adsorption and invasion of cancer cells during breast cancer metastasis.
- the present invention also provides a composition.
- the composition is a pharmaceutical composition, which contains the above-mentioned antibody or its active fragment or its fusion protein, and a pharmaceutically acceptable carrier.
- these substances can be formulated in a non-toxic, inert and pharmaceutically acceptable aqueous carrier medium, wherein the pH is generally about 5-8, preferably about 6-8, although the pH value may vary with the properties of the formulated substance and the condition to be treated.
- the formulated pharmaceutical composition can be administered by conventional routes, including (but not limited to): intraperitoneal, intravenous, or topical administration.
- the pharmaceutical composition of the present invention contains a safe and effective amount (such as 0.001-99wt%, preferably 0.01-90wt%, more preferably 0.1-80wt%) of the above-mentioned antibody (or its conjugate) of the present invention and a pharmaceutically acceptable carrier or excipient.
- a pharmaceutically acceptable carrier or excipient include (but are not limited to): saline, buffer, glucose, water, glycerol, ethanol, and combinations thereof.
- the pharmaceutical preparation should match the mode of administration.
- the pharmaceutical composition of the present invention can be prepared in the form of an injection, for example, by conventional methods using physiological saline or an aqueous solution containing glucose and other adjuvants. Pharmaceutical compositions such as injections and solutions are preferably manufactured under sterile conditions.
- the dosage of the active ingredient is a therapeutically effective amount, for example, about 10 micrograms/kg body weight to about 50 milligrams/kg body weight per day.
- the polypeptide of the present invention can
- a safe and effective amount of the immunoconjugate is administered to a mammal, wherein the safe and effective amount is usually at least about 10 micrograms/kg body weight, and in most cases does not exceed about 100 milligrams/kg body weight, preferably the dosage is about 10 micrograms/kg body weight to about 50 milligrams/kg body weight.
- the specific dosage should also take into account factors such as the route of administration and the patient's health status, which are all within the skill range of skilled physicians.
- the anti-sortilin-1 nanobody may include at least two VHH chains, and the VHH chains are connected by a linker.
- the antibody carries a detectable marker. More preferably, the marker is selected from the group consisting of an isotope, a colloidal gold marker, a colored marker or a fluorescent marker.
- Colloidal gold labeling can be carried out by methods known to those skilled in the art.
- the antibody of sortilin 1 is labeled with colloidal gold to obtain a colloidal gold-labeled antibody.
- the anti-sortilin 1 nanobody of the present invention can effectively bind to the sortilin 1 protein on the cell surface.
- the present invention also relates to a method for detecting Sortilin 1 protein.
- the method generally comprises the following steps: obtaining a cell and/or tissue sample; dissolving the sample in a medium; and detecting the level of Sortilin 1 protein in the dissolved sample.
- the sample used is not particularly limited, and a representative example is a sample containing cells in a cell storage solution.
- the present invention also provides a kit containing the antibody (or fragment thereof) or the detection plate of the present invention.
- the kit further includes a container, instructions for use, a buffer, and the like.
- the present invention also provides a detection kit for detecting the level of sortilin 1, which includes an antibody that recognizes sortilin 1 protein, a lysis medium for dissolving the sample, and universal reagents and buffers required for detection, such as various buffers, detection labels, detection substrates, etc.
- the detection kit can be an in vitro diagnostic device.
- AAV vectors to endogenously express nanobodies against sorting protein 1.
- ITR inverted repeat sequences
- the AAV virus carrying the target gene is packaged and purified by conventional methods, which can be used to express nanobodies that recognize sorting protein 1 in patients or experimental animals.
- nanobodies mediated by AAV endogenous expression can effectively inhibit the function of sorting protein 1, reduce the degradation of granule protein precursor (PGRN), and indirectly increase the level of functional PGRN, thereby achieving the treatment of various neurodegenerative diseases.
- This scheme of using AAV to endogenously express nanobodies at a high level solves the problem of too short half-life of nanobody drugs, and can achieve the therapeutic purpose of long-term benefits from a single administration.
- sequence information involved in the present invention is shown in the following table.
- test results are shown in Figure 1A.
- the purity of the expressed and purified H-SORT1-hFc protein is greater than 90%, and can be used for camel immunization and antibody screening (where M represents Marker, and lane 1 is human sortilin 1 protein with Fc domain).
- human Sortilin-HisTag fusion protein transient expression of human Sortilin 1 extracellular segment protein using mammalian cells Expi-293F: pcDNA3.1-H-SORT1-Hisx6 recombinant plasmid cloned with human Sortilin 1 extracellular segment gene was mixed with transfection reagent PEI and transfected into Expi-293F cells; cultured in a shaking incubator at 37°C and 5% CO 2 for 5 days; then the cell supernatant was collected, bound to Ni affinity chromatography column beads, and the protein was eluted with 300mM imidazole and 500mM imidazole solution; the eluted protein was then ultrafiltered into PBS solution, and the yield was measured and sampled for SDS-PAGE detection.
- the detection results are shown in B in Figure 1.
- the purity of the expressed and purified H-SORT1-Hisx6 protein is greater than 90%, which can be used for camel immunization and antibody screening (where M represents Marker, and lane 2 is human Sortilin protein with Hisx6 tag).
- Purified human Sortilin-Hisx6 fusion protein was mixed with Freund's adjuvant in a 1:1 ratio, and a healthy alpaca was immunized four times by multi-point subcutaneous injection. During the period, a small amount of blood was drawn to separate serum for serum titer detection. 100 mL of peripheral blood was collected 7-10 days after the last immunization, and Ficoll lymphocyte separation medium (GE Healthcare 17-1440-03 FICOLL PAQUE PLUS) was used to separate mononuclear cells (PBMC).
- PBMC mononuclear cells
- RNA was converted into cDNA using SuperScript TM IV First-Strand cDNA Synthesis Reaction Kit (Thermo, 18091200).
- SuperScript TM IV First-Strand cDNA Synthesis Reaction Kit (Thermo, 18091200).
- cDNA was converted into cDNA using SuperScript TM IV First-Strand cDNA Synthesis Reaction Kit (Thermo, 18091200).
- nested PCR was used to amplify the heavy chain variable region fragment (Q5 High-Fidelity 2X Master NEB, M0492L). The primers used in the two rounds of PCR are shown in Table 3 below:
- the antibody fragments recovered from the gel of the second round of PCR and the phage vector pADL were digested separately with Not1 and Bstx1 restriction endonucleases, and the digested products were subjected to agarose electrophoresis and purified, followed by enzyme ligation reaction.
- the enzyme ligation products were electrotransformed into TG1 competent cells (Weidi Biotechnology, DE1055M) to construct an Escherichia coli library containing nanobody fragments.
- the clone count showed that the library capacity was 5E8; 40 single clones were randomly selected for sequencing, and the sequencing results showed that the insertion rate of the nanobody gene was about 95%.
- VCSM13 helper phage was added in the logarithmic growth phase, and the bacteria were infected at 37°C for 1 hour; after centrifuging the bacterial culture, the supernatant was discarded and the bacteria were resuspended in 2xYT medium with antibiotics and 0.5% glucose, and the phage was packaged overnight in a constant temperature shaker at 30°C and 225rpm. The next day, the phage particles were precipitated with polyethylene glycol/sodium chloride, and the library was screened using phage display technology.
- the nano-antibody phage group that binds to the H-Sort1-Hisx6 fusion protein was enriched. 576 monoclones randomly selected from the above enriched phage group were amplified and IPTG-induced expression was performed.
- the periplasmic protein extract (PPE) was obtained by bursting the bacterial outer wall with a hypotonic solution PPB (phosphate peptone buffer), and the binding of PPE to human sorted protein 1 (ECD) protein was identified by ELISA.
- PPB phosphate peptone buffer
- ECD human sorted protein 1
- Example 3 ELISA experiment of anti-Sort1 nanobody competing for the binding of progranulin to sortilin 1
- ELISA plates were coated with 50 ⁇ L 4 ⁇ g/mL H-Sort1-His antigen at 4°C overnight; washed 3 times with 0.1% PBST (phosphate-buffered saline-Tween buffer), and 150 ⁇ L 5% BSA (bovine serum albumin) was added for 1 hour at room temperature; washed 3 times with 0.1% PBST, 6 ug/mL Bio-PGRN (biotin-modified human progranulin) and 4 ug/mL VHH-Sort1 were mixed and added, and 6 ug/mL Bio-PGRN alone was used as a control 1, and 6 ug/mL B Bio-PGRN and 4ug/mL Hyhel-VHH (non-specific control nanobody) as control 2, 1 hour at room temperature; wash 3 times with 0.1% PBST, add 50 ⁇ L horseradish peroxidase-labeled streptavidin (1:5000) (diluted with 5% BSA), 1 hour at
- the pcDNA3.1-HSort1 recombinant plasmid cloned with the full-length human sortilin 1 protein gene was mixed with the transfection reagent PEI and transfected into 293T cells. After 48 hours of transfection, the cells were collected by blowing and suspension, the culture medium was removed by centrifugation, and the cells were washed twice with pre-cooled PBS, and the cells were suspended in a pre-cooled PBS solution containing 1% BSA.
- Plasmids pcDNA3.1-HSort1, pcDNA3.1-MSort1, and pcDNA3.1-CSort1 containing the protein coding genes of human, mouse, and monkey Sort1 were constructed, and the sequences were confirmed to be correct after sequencing and alignment.
- 293T cells were transfected respectively to obtain 293T cells with high expression of Sort1 of different species on the cell surface, namely hSort1-293T, mSor1-293T, and cSort-T.
- Biolayer interferometry was performed using the Gator Prime system (Gator Bio) v2.7.3.0728 (https://www.gatorbio.com/) to evaluate the binding kinetics of the nanobody to the sortilin-1 fusion protein.
- the glass hFC probe (Gator Bio) was first immersed in Q buffer (Gator Bio) for about 30 seconds to obtain a baseline signal. The probe was then loaded with 3-5 ⁇ g/ml of nanobody-Fc fusion protein (VHH-Fc) diluted in Q buffer for 180 seconds, followed by a 30-second Q buffer wash step. Next, the VHH-Fc-bound probe was bound to 300-1.2 nM of human Sortilin-Hisx6 fusion protein, including a no sortin 1 protein control (0 nM), for about 180 seconds, followed by a 180-second dissociation step.
- VHH-Fc nanobody-Fc fusion protein
- association and dissociation curves were plotted and calculated by GatorPrime (Gator Bio) software to obtain the binding kinetic values (dissociation rate constant koff, association rate constant Kon, and dissociation constant KD). The results are shown in Figures 11-16 (clones with too low koff are not shown).
- the same method was used to determine the binding kinetics of the control antibody Latozinemab to the human sortilin 1 fusion protein.
- the binding kinetics values (koff, Kon and KD) obtained under the same conditions can be used for parallel comparison with the VHH-Fc affinity. The results are shown in Table 5.
- Example 7 Using the double epitope distribution assay to determine the grouping of antigen epitopes recognized by nanobodies on sortilin 1
- Biolayer interferometry was performed using the Gator Prime system (Gator Bio) v2.7.3.0728 (https://www.gatorbio.com/) to evaluate the antigenic epitopes to which each nanobody binds to the sortilin-1 fusion protein.
- the glass His-tag probe (Gator Bio) was first immersed in Q buffer (Gator Bio) for about 30 seconds to obtain a baseline signal. Then, the probe was loaded with 100nM human Sortilin-Hisx6 fusion protein diluted in Q buffer for 180 seconds; followed by a 30-second Q buffer wash step. Next, the probe bound to Sortilin-Hisx6 was bound to 300nM control antibody AL001 diluted in Q buffer for about 180 seconds; then the probe bound to Sortilin-AL001 was immersed in a 200nM nanobody-Fc fusion protein (VHH-Fc) solution diluted in Q buffer for a 180-second double-binding step. The double-binding curve was drawn and calculated by GatorPrime (Gator Bio) software to obtain the grouping of different antibodies against the original binding epitope.
- GatorPrime Gator Bio
- the human glioma cell line U251 has a higher level of Sort1 receptor protein on its surface, which can be used as a functional detection tool for anti-Sort1 antibodies. When antibodies bind to cell surface receptors, endocytosis is a relatively fast process.
- U251 cells were taken and plated in a culture dish equipped with a glass slide at a density of 1*10 6 cells and cultured for 24 hours to allow them to attach.
- Remove the culture medium add PBS solution containing 1 ⁇ g/mL anti-Sort1 nanobody-Fc fusion protein, and incubate the culture dish at 37°C and 4°C for 15 minutes respectively; wash the cell slides in the culture dish with PBS for 3 times, 3 minutes each time; fix the cell slides with 4% paraformaldehyde for 15 minutes, then wash with PBS 3 times, 3 minutes each time, to remove excess paraformaldehyde; use 0.5% Triton X-100 for cell permeabilization at room temperature for 20 minutes, then wash with PBS 3 times, 3 minutes each time, to remove excess Triton X-100; use PBS solution containing 5% BSA for blocking treatment at room temperature for 30 minutes; add diluted anti-human IgG Fc-FITC antibody (ratio of 1:500), incubate at room
- U251 cells cultured in vitro were plated in a 96-well cell culture plate, with 1E4 cells per well, and placed in a 37°C cell culture incubator containing 5% CO 2. 24 hours after plating, VHH-Fc nanobodies at a working concentration of 40nM or control antibody AL001 at the same molar concentration were added. After 72 hours, the cell culture supernatant was taken and the concentration of progranulin was detected using progranulin ELISA KIT (EAGLE BIOSCIENCES Cat#: E103).
- the detection method is as follows: take the cell supernatant and dilute it 15 times with the dilution buffer provided by the kit; add 50uL of the antibody conjugate provided in the kit and 50ul of the diluted sample (including the cell culture supernatant treated with the antibody, the granulin precursor standard solution and the positive control) to each ELISA well of the kit, and incubate at room temperature for 1 hour ( ⁇ 350rpm); discard the supernatant and wash 5 times with the washing solution; add 100uL of the enzyme conjugate provided by the kit and incubate at room temperature for 30 minutes ( ⁇ 350rpm); discard the supernatant and wash 5 times with the washing solution; add 100uL of the substrate solution provided by the kit and incubate at room temperature for 30 minutes in the dark; add 100uL of the stop solution to each well and detect the absorption light at 450nm within 30 minutes.
- the concentration of granulin precursor in the cell culture supernatant is calculated according to the absorbance curve of the standard sample.
- the purified nanobody-Fc fusion protein was injected intravenously into Sort1 humanized mice at a dose of 100 mg/kg on day 1 and day 7, respectively.
- the peripheral blood of the mice was collected at multiple time points before and after administration, and the serum was separated and the concentration of progranulin in the serum was measured using mouse progranulin ELISA KIT (R&D systems Cat#MPGRN0).
- plasmid vector pssMMAAV-RNY-020 for recombinant adeno-associated virus expression of nanoantibodies in the patent "A recombinant adeno-associated virus vector expressing nanoantibodies and its application” (China Patent No. 2023114805791, CN117210503A).
- This plasmid vector carries a combination of expression elements such as CAG promoter, BM40 signal peptide, nanoantibody sequence, and SV40 poly (A) terminator in sequence between the two inverted terminal repeat sequences (ITR) of the AAV expression vector, which can achieve the highest expression level of secreted nanoantibodies.
- ITR inverted terminal repeat sequences
- AAV virus packaging adopts the classic three-plasmid transfection method. It includes 1) expression plasmid pAAV9-Cap-WT encoding wild-type AAV9REP-CAP gene; 2) helper plasmid pADdeltaF6 (Helper plasmid) encoding E4/E2A/VA/L4/L5, 3) optimized expression vector plasmid pscAAV-RNV20-VHH (transfer plasmid) encoding anti-Sort1 nanobody gene.
- the three plasmids were mixed in equal proportions and transfected into HEK-293 cells cultured in DMEM medium with 10% FBS.
- the cell culture supernatant was collected and centrifuged at 3000g for 10 seconds at room temperature to remove cell debris. After that, it was filtered and sterilized with a 0.22um filter, and then ultrafiltration concentration, buffer replacement, affinity chromatography to remove host cell proteins, anion exchange chromatography to remove other trace impurities and virus empty shells and other classic steps were performed to obtain purified AAV virus with nanobody gene.
- the virus titer in the samples was determined by qPCR method.
- the upstream primer used for detection was fwd ITR primer: 5'-GGAACCCCTAGTGATGGAGTT
- the downstream primer used for detection was rev ITR primer: 5'-CGGCCTCAGTGAGCGA.
- mice As a control, we selected the same mice for the experiment and injected them with 100 mg/kg of anti-Sort1 monoclonal antibody AL001 twice on day 0 and day 7 of the experiment.
- AL001 anti-Sort1 monoclonal antibody
- the results of the Progranulin detection in serum are shown in Figure 24.
- a single injection of AAV9 encoding the Sort1 nanobody into the tail vein can significantly increase the Progranulin level in the mouse serum by more than one fold. This increase began to appear on the second day after administration and was maintained until the end of the experiment, indicating that the AAV-expressed nanobody has long-term effectiveness.
- the injection of the anti-Sort1 monoclonal antibody AL001 can only temporarily increase the Progranulin level in the mouse serum. This increase reached the highest level 2 days after administration, and then decreased. The effect can only be maintained by re-administration. 14 days after the last administration, the Progranulin in the serum will drop to the level before administration.
- the level of Progranulin in the cerebrospinal fluid is an important pharmacodynamic marker for the treatment of central nervous system diseases such as FTD.
- FTD central nervous system diseases
- AAV endogenously expressing anti-Sort1 nanoantibodies has better therapeutic potential for neurodegenerative diseases such as FTD.
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Abstract
Description
本发明涉及一种分拣蛋白1特异性的纳米抗体、含有其的重组AAV及应用,属于生物技术领域。The present invention relates to a nano antibody specific for sortilin 1, a recombinant AAV containing the nano antibody and application thereof, belonging to the field of biotechnology.
Sortilin(Sort1,分拣蛋白1)作为液泡分拣因子10(VPS10P)结构域受体家族的一员,充当细胞的受体或共同受体,介导向细胞内靶向运输不同的蛋白质。分拣蛋白1的N端位于胞外区域,C端位于胞内区域,通过跨膜结构将其胞外和胞内区域连接起来。分拣蛋白1在细胞膜上具有广泛的分布,但也可以在细胞内部的内质网、高尔基体和早期内吞囊泡等位置发现。分拣蛋白1在多种组织和器官中广泛表达,特别是在神经系统中,分拣蛋白1的表达水平较高。它在大脑的多个区域中都有表达,包括皮层、海马、纹状体和小脑等。此外,分拣蛋白1在心脏、肝脏、肺、肾脏、肠道和免疫系统等多个组织和器官中也有表达。分拣蛋白1在细胞内蛋白转运、神经发育和代谢调控等方面发挥重要作用。首先,分拣蛋白1参与细胞内蛋白的定位和转运,它可以结合多种蛋白质和配体,如神经生长因子、神经营养因子、糖蛋白等,通过内吞作用将它们从细胞表面带入内质网和转运囊泡系统,参与它们的定位和运输过程。其次,分拣蛋白1在神经系统中扮演重要角色,它参与神经元的生长和发育调控,与神经退行性疾病有关。分拣蛋白1在神经元中与多个信号通路相互作用,调节细胞的存活、凋亡和分化过程。它还与突触传递、突触可塑性和记忆形成等神经功能密切相关。此外,分拣蛋白1在代谢调控中也发挥重要作用,它参与胆固醇代谢和胰岛素释放调控,通过与低密度脂蛋白受体相关蛋白(LRP)结合,调节胆固醇的内吞和转运;在胰岛细胞中,分拣蛋白1参与胰岛素颗粒的成熟和分泌。Sortilin (Sort1), as a member of the vacuolar sorting factor 10 (VPS10P) domain receptor family, acts as a cellular receptor or co-receptor, mediating the targeted transport of different proteins into the cell. The N-terminus of sortilin 1 is located in the extracellular region, and the C-terminus is located in the intracellular region, connecting its extracellular and intracellular regions through a transmembrane structure. Sortilin 1 has a wide distribution on the cell membrane, but can also be found in the endoplasmic reticulum, Golgi apparatus, and early endocytic vesicles inside the cell. Sortilin 1 is widely expressed in a variety of tissues and organs, especially in the nervous system, where the expression level of sortilin 1 is high. It is expressed in multiple regions of the brain, including the cortex, hippocampus, striatum, and cerebellum. In addition, sortilin 1 is also expressed in multiple tissues and organs such as the heart, liver, lung, kidney, intestine, and immune system. Sortilin 1 plays an important role in intracellular protein transport, neural development, and metabolic regulation. First, Sortilin 1 is involved in the localization and transport of intracellular proteins. It can bind to a variety of proteins and ligands, such as nerve growth factor, neurotrophic factor, glycoprotein, etc., and bring them from the cell surface into the endoplasmic reticulum and transport vesicle system through endocytosis, participating in their localization and transport process. Secondly, Sortilin 1 plays an important role in the nervous system. It is involved in the growth and development regulation of neurons and is related to neurodegenerative diseases. Sortilin 1 interacts with multiple signaling pathways in neurons to regulate cell survival, apoptosis and differentiation processes. It is also closely related to neural functions such as synaptic transmission, synaptic plasticity and memory formation. In addition, Sortilin 1 also plays an important role in metabolic regulation. It is involved in cholesterol metabolism and insulin release regulation. It regulates cholesterol endocytosis and transport by binding to low-density lipoprotein receptor-related protein (LRP); in pancreatic islet cells, Sortilin 1 is involved in the maturation and secretion of insulin granules.
肿瘤治疗是Sort1抗体临床应用研究的一个方面。有研究表明分拣蛋白1在肿瘤发生中扮演重要角色。例如在肝癌发生过程中,分拣蛋白1可以通过影响癌细胞的分泌组(secretome),进而影响脂肪发生过程以及癌细胞扩增需要的能量供应。研究显示,在包括前列腺癌、卵巢癌、三阴性乳腺癌、皮肤癌、肺癌、结直肠癌、头颈癌和胰腺癌等难治性实体瘤癌症中,均发现Sort1蛋白的过度表达;并且Sort1表达水平越高,相关疾病的预后效果就越差。这些发现提示,通过特异性靶向Sort1,可能实现对这些肿瘤组织的精准识别,甚至开发出针对这些实体瘤的新型治疗手段。比如,带有效应功能的抗Sort1单克隆抗体,可以高效靶向Sort1高表达的癌细胞,通过抗体依赖的细胞毒性作用(antibody-dependent cell-mediated cytotoxicity,ADCC)等过程,活化免疫细胞特异性的清除病灶;或者将抗体分子与化疗药物、放射性同位素等杀伤分子偶联,使这些药物通过抗体介导的内吞作用进入Sort1高表达的癌细胞,从而定向杀伤这些难治性癌细胞。目前,加拿大的生物技术公司Thera Technologies Inc将化疗药物多西他赛分子偶联到靶向Sort1的多肽分子上,该名为TH1902的多肽药物偶联物(PDC)已经进入了多项实体瘤的临床实验,早期临床结果显示,该多肽药物偶联物可以减慢疾病进展、增加免疫细胞浸润、以及抑制血管生成等等,展现了较好的有效性。Tumor treatment is one aspect of the clinical application research of Sort1 antibodies. Studies have shown that sortin 1 plays an important role in tumorigenesis. For example, in the process of liver cancer, sortin 1 can affect the secretome of cancer cells, thereby affecting the fat generation process and the energy supply required for cancer cell proliferation. Studies have shown that overexpression of Sort1 protein has been found in refractory solid tumor cancers including prostate cancer, ovarian cancer, triple-negative breast cancer, skin cancer, lung cancer, colorectal cancer, head and neck cancer, and pancreatic cancer; and the higher the expression level of Sort1, the worse the prognosis of the related disease. These findings suggest that by specifically targeting Sort1, it may be possible to achieve accurate identification of these tumor tissues and even develop new treatments for these solid tumors. For example, anti-Sort1 monoclonal antibodies with effector functions can efficiently target cancer cells with high expression of Sort1, and activate immune cells to specifically eliminate lesions through processes such as antibody-dependent cell-mediated cytotoxicity (ADCC); or conjugate antibody molecules with killing molecules such as chemotherapy drugs and radioactive isotopes, so that these drugs enter cancer cells with high expression of Sort1 through antibody-mediated endocytosis, thereby targetedly killing these refractory cancer cells. Currently, the Canadian biotechnology company Thera Technologies Inc. has conjugated the chemotherapy drug docetaxel molecule to a peptide molecule targeting Sort1. The peptide drug conjugate (PDC) named TH1902 has entered multiple clinical trials for solid tumors. Early clinical results show that the peptide drug conjugate can slow disease progression, increase immune cell infiltration, and inhibit angiogenesis, etc., showing good effectiveness.
在临床应用的另一方面,目前研究较多的是分拣蛋白1通过调控Progranulin(颗粒蛋白前体,PGRN)水平,进而影响神经系统的功能。Progranulin(颗粒蛋白前体,PGRN)是一种由588个氨基酸组成的胞外分泌蛋白,在人体中广泛分布,特别丰富于中枢神经系统、免疫系统、内分泌系统和肾脏等组织和细胞中,其在炎症调节、神经保护和肿瘤发展等方面发挥重要作用。在神经保护和神经发育的过程中,颗粒蛋白前体能够促进神经元的生长、分化和存活,并参与突触形成和神经传递调节。颗粒蛋白前体的缺乏可能导致炎症反应的增加,引发神经元的毒性损伤,干扰神经元的生长和突触连接的形成,导致神经网络功能紊乱。颗粒蛋白前体缺乏还可能导致异常的自噬过程和蛋白质代谢紊乱,进一步影响细胞功能。On the other hand, in terms of clinical application, Sortilin 1 has been widely studied for regulating the level of Progranulin (PGRN), thereby affecting the function of the nervous system. Progranulin (PGRN) is an extracellular secretory protein composed of 588 amino acids. It is widely distributed in the human body, especially in tissues and cells such as the central nervous system, immune system, endocrine system and kidneys. It plays an important role in inflammation regulation, neuroprotection and tumor development. In the process of neuroprotection and neurodevelopment, progranulin can promote the growth, differentiation and survival of neurons, and participate in synapse formation and neurotransmission regulation. The lack of progranulin may lead to an increase in inflammatory response, induce toxic damage to neurons, interfere with neuronal growth and the formation of synaptic connections, and lead to neural network dysfunction. Progranulin deficiency may also lead to abnormal autophagy and protein metabolism disorders, further affecting cell function.
分拣蛋白1是颗粒蛋白前体的主要降解途径之一:分拣蛋白1的胞外结构域与颗粒蛋白前体结合,其介导的内吞作用将颗粒蛋白前体从细胞外带入细胞内部,通过囊泡和溶酶体结合,分拣蛋白1促使颗粒蛋白前体进入降解途径,从而降低颗粒蛋白前体在细胞外的浓度。颗粒蛋白前体的水平下降会导致炎症反应的增加,引发神经元的毒性损伤,干扰神经元的生长和突触连接的形成,导致神经网络功能紊乱。相应地,抑制分拣蛋白1的功能可以减少颗粒蛋白前体的降解,从而提高细胞内和细胞外的颗粒蛋白前体水平。当分拣蛋白1功能发生异常或分拣蛋白1表达水平改变时,会导致颗粒蛋白前体水平的异常变化。通过抑制分拣蛋白1的功能可以预防颗粒蛋白前体的异常降解,从而增加颗粒蛋白前体的可用量。研究表明,在前额颞叶变性(Frontotemporal Dementia,FTD)、肌萎缩侧索硬化(amyotrophic lateral sclerosis,ALS)、帕金森病(Parkinson's Disease,PD)和阿兹海默症(Alzheimer'sDisease,AD)等神经退行性疾病中,颗粒蛋白前体水平的降低与疾病的发生和进展相关。因此,通过抑制分拣蛋白1的功能以提高颗粒蛋白前体水平,可能有助于恢复颗粒蛋白前体的生理功能,从而对FTD、ALS、PD、AD等相关疾病具有治疗潜力。Sortilin 1 is one of the main degradation pathways of progranulin: the extracellular domain of Sortilin 1 binds to progranulin, and the endocytosis mediated by Sortilin 1 brings progranulin from the outside of the cell into the inside of the cell. By binding to vesicles and lysosomes, Sortilin 1 promotes progranulin to enter the degradation pathway, thereby reducing the concentration of progranulin outside the cell. The decrease in the level of progranulin can lead to an increase in inflammatory response, induce toxic damage to neurons, interfere with neuronal growth and the formation of synaptic connections, and lead to neural network dysfunction. Accordingly, inhibiting the function of Sortilin 1 can reduce the degradation of progranulin, thereby increasing the level of progranulin inside and outside the cell. When the function of Sortilin 1 is abnormal or the expression level of Sortilin 1 changes, it will lead to abnormal changes in the level of progranulin. By inhibiting the function of Sortilin 1, the abnormal degradation of progranulin can be prevented, thereby increasing the available amount of progranulin. Studies have shown that in neurodegenerative diseases such as frontotemporal dementia (FTD), amyotrophic lateral sclerosis (ALS), Parkinson's disease (PD) and Alzheimer's disease (AD), the reduction of progranulin levels is associated with the occurrence and progression of the disease. Therefore, inhibiting the function of sortilin 1 to increase the level of progranulin may help restore the physiological function of progranulin, thereby having therapeutic potential for FTD, ALS, PD, AD and other related diseases.
使用抗体抑制分拣蛋白1的功能是一种潜在的策略,可以实现提高颗粒蛋白前体水平的目的。抗体作为一种特异性的分子工具,可以与分拣蛋白1发生特异性的结合,并影响颗粒蛋白前体与分拣蛋白1的结合,进而阻断颗粒蛋白前体的降解途径,这种策略有望增加颗粒蛋白前体的生物活性和功能表达,可能对相关疾病的治疗具有潜在的益处。全球已有包括Lundbeck,Sanofi,Takeda和GSK在内的多家药企和生物技术公司投入到分拣蛋白1抗体的研发,其中美国生物技术公司Alector Therapeutics开发的单克隆抗体Latozinemab(AL001)已经进入针对FTD的临床三期,暗示分拣蛋白1的抗体对于多种神经退行性疾病有治疗潜力。尽管如此,全球尚无分拣蛋白1抗体获批上市,因此仍然需要开发新的、差异化显著的、更适合于临床应用的分拣蛋白1抗体。Using antibodies to inhibit the function of sortilin 1 is a potential strategy to achieve the goal of increasing the level of progranulin. As a specific molecular tool, antibodies can specifically bind to sortilin 1 and affect the binding of progranulin to sortilin 1, thereby blocking the degradation pathway of progranulin. This strategy is expected to increase the biological activity and functional expression of progranulin, which may have potential benefits for the treatment of related diseases. Many pharmaceutical companies and biotechnology companies around the world, including Lundbeck, Sanofi, Takeda and GSK, have invested in the research and development of sortilin 1 antibodies. Among them, the monoclonal antibody Latozinemab (AL001) developed by the American biotechnology company Alector Therapeutics has entered the third phase of clinical trials for FTD, suggesting that sortilin 1 antibodies have therapeutic potential for a variety of neurodegenerative diseases. Despite this, no sortilin 1 antibody has been approved for marketing worldwide, so there is still a need to develop new, significantly differentiated sortilin 1 antibodies that are more suitable for clinical applications.
常规的IgG抗体的开发和应用存在很多问题,比如研发周期长,生产成本高,稳定性差,免疫原性高等问题,限制了其在临床开发上的应用范围。1993年Hamers等报道,骆驼体内存在这天然缺失轻链和重链恒定区1(CH1)的重链抗体,克隆其可变区得到只由一个重链可变区组成的单域抗体,被称为VHH(variable domain of heavy chain of heavy-chain antibody),现已被命名为“纳米抗体”(nanobody,Nb)。纳米抗体的分子量在15kD左右,是具有完整结合功能的最小的抗原结合片段,其结构成椭圆形,直径2.5nm,长4nm。与普通的IgG单克隆抗体相比,纳米抗体由于其小尺寸和良好的可渗透性,可以更容易地穿过组织屏障,提高治疗药物的局部浓度。由于小尺寸和单个变量域的结构,纳米抗体的在人体内触发免疫反应的风险相对较低,降低了患者使用纳米抗体时产生的免疫相关问题,并增加了其在长期治疗中的可接受性。纳米抗体对环境的耐受性良好,构象稳定且容易合成。这些独特的性质,使纳米抗体在疾病诊断和靶向治疗等方面具有独特的应用价值。遗憾的是,由于纳米抗体分子过小,纳米抗体无法在肾小球过滤的时候被血液保留,在体内容易被代谢清除,导致纳米抗体给药后的半衰期非常短,无法在体内维持有效的药物浓度,从而影响其广泛应用的效果和可行性。为了延长纳米抗体在体内的半衰期,抗体专家采用了多种方法,例如聚乙二醇修饰、工程化Fc片段融合、抗体片段拼接以及其他融合蛋白拼接等。尽管这些方法在一定程度上延长了纳米抗体的半衰期,但同时也增加了药物分子的体积和分子量,在一定程度上影响了纳米抗体的组织渗透性。此外,这些改造提高了纳米抗体类药物的生产成本,并可能导致更高的免疫原性,从而使纳米抗体失去了作为最小抗原结合片段的关键优势。药物研究领域一直在寻找可以有效维持纳米抗体在体内的药物浓度,而不改变其基本分子特征的方法。 There are many problems in the development and application of conventional IgG antibodies, such as long R&D cycle, high production cost, poor stability, high immunogenicity, etc., which limit its application scope in clinical development. In 1993, Hamers et al. reported that camels have this natural lack of light chain and heavy chain constant region 1 (CH1) heavy chain antibody, cloned its variable region to obtain a single domain antibody consisting of only one heavy chain variable region, called VHH (variable domain of heavy chain of heavy-chain antibody), now named "nanobody" (Nb). The molecular weight of nanobody is about 15kD, which is the smallest antigen binding fragment with complete binding function. Its structure is elliptical, with a diameter of 2.5nm and a length of 4nm. Compared with ordinary IgG monoclonal antibodies, nanobody can more easily pass through tissue barriers and increase the local concentration of therapeutic drugs due to its small size and good permeability. Due to the small size and the structure of a single variable domain, the risk of nanobody triggering an immune response in the human body is relatively low, which reduces the immune-related problems caused by patients using nanoantibodies and increases their acceptability in long-term treatment. Nanobodies have good environmental tolerance, stable conformation and are easy to synthesize. These unique properties make nanobodies have unique application value in disease diagnosis and targeted therapy. Unfortunately, because nanoantibody molecules are too small, nanoantibodies cannot be retained by the blood during glomerular filtration and are easily metabolized and cleared in the body, resulting in a very short half-life of nanoantibodies after administration, and they cannot maintain effective drug concentrations in the body, thus affecting the effect and feasibility of their widespread application. In order to extend the half-life of nanoantibodies in the body, antibody experts have adopted a variety of methods, such as polyethylene glycol modification, engineered Fc fragment fusion, antibody fragment splicing, and other fusion protein splicing. Although these methods have extended the half-life of nanoantibodies to a certain extent, they have also increased the volume and molecular weight of drug molecules, affecting the tissue permeability of nanoantibodies to a certain extent. In addition, these modifications increase the production cost of nanoantibody drugs and may lead to higher immunogenicity, thereby causing nanoantibodies to lose their key advantage as the smallest antigen-binding fragment. The field of drug research has been looking for methods that can effectively maintain the drug concentration of nanoantibodies in the body without changing their basic molecular characteristics.
综上,尽管纳米抗体具有特异性高、容易生产等天然优势,但抗sort1的纳米抗体性能需进一步提升,且截至目前,尚未见到用纳米抗体靶向Sort1治疗疾病的报道。主要原因有二:一是单纯的纳米抗体半衰期过短,无法通过外源性给药达到理想的体内药物浓度,难以实现对神经退行性疾病的长期治疗效果;二是Sort1作为肿瘤靶点的研究刚刚开始,直到最近才完成多肽药物偶联物的功能验证,后续基于抗体的抗肿瘤研究尚未报道。In summary, despite the natural advantages of nano-antibodies such as high specificity and easy production, the performance of nano-antibodies against sort1 needs to be further improved, and so far, there have been no reports of using nano-antibodies to target Sort1 to treat diseases. There are two main reasons: First, the half-life of pure nano-antibodies is too short, and it is impossible to achieve the ideal drug concentration in the body through exogenous administration, making it difficult to achieve long-term therapeutic effects on neurodegenerative diseases; second, the study of Sort1 as a tumor target has just begun, and the functional verification of peptide-drug conjugates has only recently been completed, and subsequent antibody-based anti-tumor research has not yet been reported.
发明内容Summary of the invention
为解决上述问题,本发明提供了一种抗分拣蛋白1的纳米抗体及其应用,目的在于提供多种与目前的分拣蛋白1单克隆抗体AL001差异化显著、且具有更好临床应用前景的分拣蛋白1抗体。本发明的抗体有广泛生物应用价值和临床应用价值,其应用涉及到与分拣蛋白1相关的疾病的诊断和治疗、基础医学研究、生物学研究等多个领域。To solve the above problems, the present invention provides an anti-sortilin 1 nanobody and its application, aiming to provide a variety of sortilin 1 antibodies that are significantly differentiated from the current sortilin 1 monoclonal antibody AL001 and have better clinical application prospects. The antibodies of the present invention have broad biological and clinical application values, and their applications involve diagnosis and treatment of diseases related to sortilin 1, basic medical research, biological research and other fields.
本发明的第一个目的是提供一种分拣蛋白1特异性的纳米抗体,所述纳米抗体的重链可变区包括互补决定区CDR1、CDR2、CDR3,互补决定区包括以下任一组合或与其同源性不低于90%的序列:The first object of the present invention is to provide a sortilin 1-specific nanobody, wherein the heavy chain variable region of the nanobody comprises complementary determining regions CDR1, CDR2, and CDR3, and the complementary determining regions comprise any combination of the following or a sequence with a homology of not less than 90% thereto:
1)SEQ ID NO.1所示的CDR1、SEQ ID NO.2所示的CDR2、SEQ ID NO.3所示的CDR3;1) CDR1 shown in SEQ ID NO.1, CDR2 shown in SEQ ID NO.2, CDR3 shown in SEQ ID NO.3;
2)SEQ ID NO.8所示的CDR1、SEQ ID NO.9所示的CDR2、SEQ ID NO.10所示的CDR3;2) CDR1 shown in SEQ ID NO.8, CDR2 shown in SEQ ID NO.9, and CDR3 shown in SEQ ID NO.10;
3)SEQ ID NO.15所示的CDR1、SEQ ID NO.16所示的CDR2、SEQ ID NO.17所示的CDR3;3) CDR1 shown in SEQ ID NO.15, CDR2 shown in SEQ ID NO.16, and CDR3 shown in SEQ ID NO.17;
4)SEQ ID NO.22所示的CDR1、SEQ ID NO.23所示的CDR2、SEQ ID NO.24所示的CDR3;4) CDR1 shown in SEQ ID NO.22, CDR2 shown in SEQ ID NO.23, and CDR3 shown in SEQ ID NO.24;
5)SEQ ID NO.29所示的CDR1、SEQ ID NO.30所示的CDR2、SEQ ID NO.31所示的CDR3;5) CDR1 shown in SEQ ID NO.29, CDR2 shown in SEQ ID NO.30, CDR3 shown in NO.31;
6)SEQ ID NO.36所示的CDR1、SEQ ID NO.37所示的CDR2、SEQ ID NO.38所示的CDR3;6) CDR1 shown in SEQ ID NO.36, CDR2 shown in SEQ ID NO.37, and CDR3 shown in SEQ ID NO.38;
7)SEQ ID NO.43所示的CDR1、SEQ ID NO.44所示的CDR2、SEQ ID NO.45所示的CDR3;7) CDR1 shown in SEQ ID NO.43, CDR2 shown in SEQ ID NO.44, and CDR3 shown in SEQ ID NO.45;
8)SEQ ID NO.50所示的CDR1、SEQ ID NO.51所示的CDR2、SEQ ID NO.52所示的CDR3;8) CDR1 shown in SEQ ID NO.50, CDR2 shown in SEQ ID NO.51, and CDR3 shown in SEQ ID NO.52;
9)SEQ ID NO.57所示的CDR1、SEQ ID NO.58所示的CDR2、SEQ ID NO.59所示的CDR3;9) CDR1 shown in SEQ ID NO.57, CDR2 shown in SEQ ID NO.58, and CDR3 shown in SEQ ID NO.59;
10)SEQ ID NO.120所示的CDR1、SEQ ID NO.121所示的CDR2、SEQ ID NO.122所示的CDR3。10) CDR1 shown by SEQ ID NO.120, CDR2 shown by SEQ ID NO.121, and CDR3 shown by SEQ ID NO.122.
进一步地,本发明包括那些具有带CDR的抗体重链可变区的分子,只要其CDR与上述CDR序列具有90%以上(较佳地95%以上,最佳地98%以上,如90%、91%、92%、93%、94%、95%、96%、97%、98%、99%)的同源性。Furthermore, the present invention includes those molecules having antibody heavy chain variable regions with CDRs, as long as their CDRs have more than 90% (preferably more than 95%, optimally more than 98%, such as 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%) homology with the above-mentioned CDR sequences.
进一步地,同源性不低于90%的序列由CDR1、CDR2和/或CDR3经氨基酸替换得到,所述的氨基酸替换选自以下一种或多种:Furthermore, the sequence with a homology of not less than 90% is obtained by amino acid substitution of CDR1, CDR2 and/or CDR3, and the amino acid substitution is selected from one or more of the following:
1)丙氨酸替换为缬氨酸、亮氨酸或异亮氨酸,1) Alanine is replaced by valine, leucine or isoleucine,
2)精氨酸替换为赖氨酸、谷氨酰胺或天冬酰胺,2) Arginine is replaced by lysine, glutamine or asparagine,
3)天冬酰胺替换为谷氨酰胺、组氨酸、赖氨酸或精氨酸,3) Asparagine is replaced by glutamine, histidine, lysine or arginine,
4)天冬氨酸替换为谷氨酸,4) Aspartic acid is replaced by glutamic acid,
5)半胱氨酸替换为丝氨酸,5) Cysteine is replaced by serine,
6)谷氨酰胺替换为天冬酰胺,6) Glutamine is replaced by asparagine,
7)谷氨酸替换为天冬氨酸, 7) Glutamic acid replaced by aspartic acid,
8)甘氨酸替换为脯氨酸或丙氨酸,8) Glycine is replaced by proline or alanine,
9)组氨酸替换为天冬酰胺、谷氨酰胺、赖氨酸或精氨酸,9) Histidine is replaced by asparagine, glutamine, lysine or arginine,
10)异亮氨酸替换为亮氨酸、缬氨酸、甲硫氨酸、丙氨酸或苯丙氨酸,10) isoleucine is replaced by leucine, valine, methionine, alanine or phenylalanine,
11)亮氨酸替换为异亮氨酸、缬氨酸、甲硫氨酸、丙氨酸或苯丙氨酸,11) Leucine is replaced by isoleucine, valine, methionine, alanine or phenylalanine,
12)赖氨酸替换为精氨酸、谷氨酰胺或天冬酰胺,12) Lysine is replaced by arginine, glutamine or asparagine,
13)甲硫氨酸替换为亮氨酸、苯丙氨酸或异亮氨酸,13) Methionine is replaced by leucine, phenylalanine or isoleucine,
14)苯丙氨酸替换为亮氨酸、缬氨酸、异亮氨酸、丙氨酸或酪氨酸,14) Phenylalanine is replaced by leucine, valine, isoleucine, alanine or tyrosine,
15)脯氨酸替换为丙氨酸或甘氨酸,15) Proline is replaced by alanine or glycine,
16)丝氨酸替换为苏氨酸,16) Serine is replaced by threonine,
17)苏氨酸替换为丝氨酸,17) Threonine is replaced by serine,
18)色氨酸替换为酪氨酸或苯丙氨酸,18) Tryptophan is replaced by tyrosine or phenylalanine,
19)酪氨酸替换为色氨酸、苯丙氨酸、苏氨酸或丝氨酸,19) Tyrosine is replaced by tryptophan, phenylalanine, threonine or serine,
20)缬氨酸替换为异亮氨酸、亮氨酸、甲硫氨酸、苯丙氨酸或丙氨酸。20) Valine is replaced by isoleucine, leucine, methionine, phenylalanine or alanine.
进一步地,所述纳米抗体的可变区包括框架区FR1、FR2、FR3、FR4,相邻两个框架区之间设置互补决定区,即CDR1、CDR2、CDR3被框架区FR1、FR2、FR3、FR4所隔开。因此纳米抗体上依次设置有FR1、CDR1、FR2、CDR2、FR3、CDR3、FR4。Furthermore, the variable region of the nanobody includes framework regions FR1, FR2, FR3, and FR4, and a complementary determining region is arranged between two adjacent framework regions, that is, CDR1, CDR2, and CDR3 are separated by framework regions FR1, FR2, FR3, and FR4. Therefore, FR1, CDR1, FR2, CDR2, FR3, CDR3, and FR4 are arranged on the nanobody in sequence.
进一步地,所述框架区包括以下任一种或与其同源性不低于90%的序列:Furthermore, the framework region includes any one of the following or a sequence having a homology of not less than 90% thereto:
1)SEQ ID NO.4所示的FR1、SEQ ID NO.5所示的FR2、SEQ ID NO.6所示的FR3、SEQ ID NO.7所示的FR4;1) FR1 shown in SEQ ID NO.4, FR2 shown in SEQ ID NO.5, FR3 shown in SEQ ID NO.6, FR4 shown in SEQ ID NO.7;
2)SEQ ID NO.11所示的FR1、SEQ ID NO.12所示的FR2、SEQ ID NO.13所示的FR3、SEQ ID NO.14所示的FR4;2) FR1 shown in SEQ ID NO.11, FR2 shown in SEQ ID NO.12, FR3 shown in SEQ ID NO.13, and FR4 shown in SEQ ID NO.14;
3)SEQ ID NO.18所示的FR1、SEQ ID NO.19所示的FR2、SEQ ID NO.20所示的FR3、SEQ ID NO.21所示的FR4;3) FR1 shown in SEQ ID NO.18, FR2 shown in SEQ ID NO.19, FR3 shown in SEQ ID NO.20, and FR4 shown in SEQ ID NO.21;
4)SEQ ID NO.25所示的FR1、SEQ ID NO.26所示的FR2、SEQ ID NO.27所示的FR3、SEQ ID NO.28所示的FR4;4) FR1 shown in SEQ ID NO.25, FR2 shown in SEQ ID NO.26, FR3 shown in SEQ ID NO.27, and FR4 shown in SEQ ID NO.28;
5)SEQ ID NO.32所示的FR1、SEQ ID NO.33所示的FR2、SEQ ID NO.34所示的FR3、SEQ ID NO.35所示的FR4;5) FR1 shown in SEQ ID NO.32, FR2 shown in SEQ ID NO.33, FR3 shown in SEQ ID NO.34, and FR4 shown in SEQ ID NO.35;
6)SEQ ID NO.39所示的FR1、SEQ ID NO.40所示的FR2、SEQ ID NO.41所示的FR3、SEQ ID NO.42所示的FR4;6) FR1 shown in SEQ ID NO.39, FR2 shown in SEQ ID NO.40, FR3 shown in SEQ ID NO.41, and FR4 shown in SEQ ID NO.42;
7)SEQ ID NO.46所示的FR1、SEQ ID NO.47所示的FR2、SEQ ID NO.48所示的FR3、SEQ ID NO.49所示的FR4;7) FR1 shown in SEQ ID NO.46, FR2 shown in SEQ ID NO.47, FR3 shown in SEQ ID NO.48, and FR4 shown in SEQ ID NO.49;
8)SEQ ID NO.53所示的FR1、SEQ ID NO.54所示的FR2、SEQ ID NO.55所示的FR3、SEQ ID NO.56所示的FR4;8) FR1 shown in SEQ ID NO.53, FR2 shown in SEQ ID NO.54, FR3 shown in SEQ ID NO.55, and FR4 shown in SEQ ID NO.56;
9)SEQ ID NO.60所示的FR1、SEQ ID NO.61所示的FR2、SEQ ID NO.62所示的FR3、SEQ ID NO.63所示的FR4;9) FR1 shown in SEQ ID NO.60, FR2 shown in SEQ ID NO.61, FR3 shown in SEQ ID NO.62, and FR4 shown in SEQ ID NO.63;
10)SEQ ID NO.123所示的FR1、SEQ ID NO.124所示的FR2、SEQ ID NO.125所示的FR3、SEQ ID NO.126所示的FR4。10)FR1 shown by SEQ ID NO.123, FR2 shown by SEQ ID NO.124, FR3 shown by SEQ ID NO.125, and FR4 shown by SEQ ID NO.126.
进一步地,所述纳米抗体含有如SEQ ID NO.148-SEQ ID NO.156和SEQ ID NO.165任一所示的序列。Furthermore, the nanoantibody contains a sequence as shown in any one of SEQ ID NO.148-SEQ ID NO.156 and SEQ ID NO.165.
本发明的第二个目的是提供编码上述纳米抗体的多核苷酸。A second object of the present invention is to provide a polynucleotide encoding the above-mentioned Nanobody.
本发明的第三个目的是提供含有上述多核苷酸并用于内源性表达抗分拣蛋白1纳米抗体的重组腺相关病毒(AAV)表达载体。The third object of the present invention is to provide a recombinant adeno-associated virus (AAV) expression vector containing the above-mentioned polynucleotide and used for endogenously expressing anti-sortilin 1 nanobody.
进一步地,所述重组表达载体为优化的重组腺相关病毒载体,用于提高重组腺病毒内源性表达纳米抗体的表达水平。其中含有的表达原件包括但不限于:基因表达单元必须的启动子、polyA尾等,在多核苷酸前还可设置信号肽。优选地,含有CMV启动子或CAG启动子(包括CMV增强子和chicken β-actin启动子)、BM40信号肽、多核苷酸和SV40 polyA尾,且不含有内含子,所述CAG启动子和BM40信号肽位于多核苷酸的上游,SV40 polyA尾位于多核苷酸的下游。Furthermore, the recombinant expression vector is an optimized recombinant adeno-associated virus vector, which is used to increase the expression level of the recombinant adenovirus endogenously expressed nanobody. The expression elements contained therein include but are not limited to: a promoter and a polyA tail required for the gene expression unit, and a signal peptide may also be set before the polynucleotide. Preferably, the recombinant expression vector contains a CMV promoter or a CAG promoter (including a CMV enhancer and a chicken β-actin promoter), BM40 signal peptide, polynucleotide and SV40 polyA tail, and does not contain introns, the CAG promoter and BM40 signal peptide are located upstream of the polynucleotide, and the SV40 polyA tail is located downstream of the polynucleotide.
进一步地,所述重组腺相关病毒载体上含有用于AAV病毒包装的反向末端重复序列(ITR),分别在CAG启动子上游和SV40 polyA尾下游连接反向末端重复序列,两个ITR完全相同但方向相反。后续将重组载体经腺相关病毒包装,可制成相关的基因治疗产品。Furthermore, the recombinant adeno-associated virus vector contains an inverted terminal repeat sequence (ITR) for AAV virus packaging, and the inverted terminal repeat sequence is connected to the upstream of the CAG promoter and the downstream of the SV40 polyA tail, respectively, and the two ITRs are exactly the same but in opposite directions. The recombinant vector is subsequently packaged by the adeno-associated virus to produce a related gene therapy product.
进一步地,CAG启动子的序列如SEQ ID NO.169所示,BM40信号肽的序列如SEQ ID NO.170所示,其编码的氨基酸序列如SEQ ID NO.171所示,SV40 polyA尾的序列如SEQ ID NO.172所示,反向末端重复序列的序列如SEQ ID NO.173所示。具体地,
Further, the sequence of the CAG promoter is shown in SEQ ID NO.169, the sequence of the BM40 signal peptide is shown in SEQ ID NO.170, the amino acid sequence encoded by it is shown in SEQ ID NO.171, the sequence of the SV40 polyA tail is shown in SEQ ID NO.172, and the sequence of the inverted terminal repeat sequence is shown in SEQ ID NO.173. Specifically,
进一步地,用于在体内表达抗分拣蛋白1纳米抗体的腺相关病毒可以选择多种病毒血清型,包括但不限于AAV1,AAV2,AAV3,AAV4,AAV5,AAV6,AAV7,AAV8,AAV9,AAV12,AAVrh10,AAVrh20,AAVrh32,AAVrh33,AAVrh34,AAVrh39,AAVrh43,AAVrh51,AAVrh52,AAVrh53,AAVrh58,AAVrh61,AAVrh64等常用血清型,以及其他工程化改造的腺相关病毒血清型。Furthermore, adeno-associated viruses used to express anti-sortilin 1 nanobodies in vivo can be selected from a variety of viral serotypes, including but not limited to AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV12, AAVrh10, AAVrh20, AAVrh32, AAVrh33, AAVrh34, AAVrh39, AAVrh43, AAVrh51, AAVrh52, AAVrh53, AAVrh58, AAVrh61, AAVrh64 and other commonly used serotypes, as well as other engineered adeno-associated virus serotypes.
本发明的第四个目的是提供含有上述重组表达载体的宿主细胞。The fourth object of the present invention is to provide a host cell containing the above recombinant expression vector.
进一步地,所述宿主细胞可为原核细胞或真核细胞,如植物细胞、动物细胞、微生物等。Furthermore, the host cell may be a prokaryotic cell or a eukaryotic cell, such as a plant cell, an animal cell, a microorganism, and the like.
本发明的第五个目的是提供含有上述纳米抗体的单价抗体、二价抗体、多价抗体或重组蛋白。A fifth object of the present invention is to provide a monovalent antibody, a bivalent antibody, a multivalent antibody or a recombinant protein containing the above-mentioned Nanobody.
进一步地,所述重组蛋白含有Furthermore, the recombinant protein contains
(a)抗分拣蛋白1纳米抗体,或上述二价或多价抗体;(a) an anti-sortilin-1 Nanobody, or a bivalent or multivalent antibody as described above;
(b)协助表达和/或纯化的标签序列。(b) Tag sequences that facilitate expression and/or purification.
优选地,所述的标签序列包括Fc标签、HA标签或6xHis标签等。如与Fc片段形成的融合蛋白,融合蛋白从N端到C端的结构如式Ia或Ib所示:Preferably, the tag sequence includes an Fc tag, an HA tag or a 6xHis tag, etc. For example, a fusion protein formed with an Fc fragment has a structure from the N-terminus to the C-terminus as shown in Formula Ia or Ib:
A-L-B(Ia),A-L-B(Ia),
B-L-A(Ib),B-L-A(Ib),
其中A为上述抗分拣蛋白1纳米抗体,B为IgG的Fc片段,L为无或柔性接头。作为优选,柔性接头为肽接头,更优选地,肽接头具有1-20个氨基酸。IgG的Fc片段包括人的IgG的Fc片段或其工程化改造的突变体,IgG的Fc片段选自IgG1、IgG2、IgG3、IgG4的Fc片段或其组合。Wherein A is the above-mentioned anti-sortilin 1 nanobody, B is the Fc fragment of IgG, and L is no or a flexible linker. Preferably, the flexible linker is a peptide linker, and more preferably, the peptide linker has 1-20 amino acids. The Fc fragment of IgG includes the Fc fragment of human IgG or an engineered mutant thereof, and the Fc fragment of IgG is selected from the Fc fragment of IgG1, IgG2, IgG3, IgG4 or a combination thereof.
本发明的第六个目的是提供含有上述纳米抗体的抗体-药物偶联物(Antibody-Drug Conjugate,ADC)。The sixth object of the present invention is to provide an antibody-drug conjugate (ADC) containing the above-mentioned nanoantibody.
进一步地,所述抗体药物偶联物含有:Furthermore, the antibody drug conjugate contains:
(a)抗分拣蛋白1纳米抗体,或上述重组蛋白、二价或多价抗体,用于将药物结合分拣蛋白1高表达的靶细胞;(a) an anti-sortilin-1 nanobody, or the above-mentioned recombinant protein, bivalent or multivalent antibody, for binding the drug to a target cell with high expression of sortilin-1;
(b)细胞毒性荷载(Cytotoxic payloads),这些荷载在被水解切割之后成为活性很强的药物,可以高效杀伤靶细胞或者抑制靶细胞的功能,常用的细胞毒性荷载包括多种DNA损伤药物,微管蛋白抑制剂,细胞因子、放射性核素、或者siRNA、miRNA等RNA类荷载。(b) Cytotoxic payloads. These payloads become highly active drugs after being hydrolyzed and cleaved, and can effectively kill target cells or inhibit the function of target cells. Commonly used cytotoxic payloads include a variety of DNA-damaging drugs, microtubule inhibitors, cytokines, radionuclides, or RNA payloads such as siRNA and miRNA.
(c)用于链接抗体和毒性荷载的连接子,当抗体-药物偶联物到达细胞之后,ADC通过细胞内吞作用进入细胞,连接子与细胞毒性荷载的连接处通过水解等方式被切断,从而释放出细胞毒性物质以便其行使功能,包括可切割连接子和不可切割连接子两类。(c) Linkers used to link antibodies and toxic loads. When the antibody-drug conjugate reaches the cell, the ADC enters the cell through endocytosis, and the connection between the linker and the cytotoxic load is cut by hydrolysis or other means, thereby releasing the cytotoxic substance to enable it to perform its function. There are two types of linkers: cleavable linkers and non-cleavable linkers.
本发明的第七个目的是提供上述纳米抗体、多核苷酸、重组表达载体、宿主细胞、单价抗体、二价抗体、多价抗体、重组蛋白或抗体-药物偶联物在制备诊断、预防或治疗产品中的应用。所述产品的形式包括但不限于药剂、试剂、检测板、试剂盒等。 The seventh object of the present invention is to provide the use of the above-mentioned nanobodies, polynucleotides, recombinant expression vectors, host cells, monovalent antibodies, bivalent antibodies, multivalent antibodies, recombinant proteins or antibody-drug conjugates in the preparation of diagnostic, preventive or therapeutic products. The form of the product includes but is not limited to medicaments, reagents, test plates, kits, etc.
进一步地,所述产品用于检测分拣蛋白1分子水平、靶向分拣蛋白1高表达细胞、抑制分拣蛋白1的功能或提高颗粒蛋白前体水平(体外或体内),具体地,用于阻断颗粒蛋白前体和分拣蛋白1相互作用。当然,本领域技术人员可以知晓,可用各种药用载体体内递送纳米抗体,如采用AAV病毒载体或LNP表达分拣蛋白1纳米抗体的策略,用于在体内内源性表达分拣蛋白1纳米抗体。Further, the product is used to detect the molecular level of sortilin 1, target cells with high expression of sortilin 1, inhibit the function of sortilin 1 or increase the level of progranulin (in vitro or in vivo), specifically, to block the interaction between progranulin and sortilin 1. Of course, those skilled in the art will know that various pharmaceutical carriers can be used to deliver nanobodies in vivo, such as the strategy of expressing sortilin 1 nanobodies using AAV viral vectors or LNPs, for endogenous expression of sortilin 1 nanobodies in vivo.
进一步地,所述的检测包括流式检测、细胞免疫荧光检测、酶联免疫吸附试验(ELISA)检测等。Furthermore, the detection includes flow cytometry, cell immunofluorescence detection, enzyme-linked immunosorbent assay (ELISA) detection, etc.
进一步地,所述药物为预防或治疗肿瘤的药物,可用于预防或治疗各种实体瘤和非实体瘤,如结肠癌、肝癌、肺癌、乳腺癌、卵巢癌、子宫内膜癌、前列腺癌、肾癌、恶性黑色素细胞瘤、胆囊癌、脑胶质瘤、胰腺癌等。Furthermore, the drug is a drug for preventing or treating tumors, and can be used to prevent or treat various solid tumors and non-solid tumors, such as colon cancer, liver cancer, lung cancer, breast cancer, ovarian cancer, endometrial cancer, prostate cancer, kidney cancer, malignant melanoma, gallbladder cancer, brain glioma, pancreatic cancer, etc.
进一步地,所述药物还可为中枢神经系统疾病预防或治疗药物,如神经退行性疾病。所述药物可预防或治疗的疾病包括但不限于:前额颞叶变性(Frontotemporal Dementia,FTD),肌萎缩侧索硬化症(Amyotrophic lateral sclerosis,ALS),阿兹海默症(Alzheimer’s Disease,AD)和帕金森病(Parkin’on's Disease,PD),抑郁症,神经紊乱(neuropsyciatric disorder),血管性痴呆,癫痫发作(seizuries),视网膜营养不良(retinal dystrophy),老年性黄斑病变(age related macular degeneration),青光眼,创伤性脑损伤,衰老,伤口愈合,中风,关节炎(arthritis),动脉粥样硬化等。Furthermore, the drug can also be a drug for preventing or treating central nervous system diseases, such as neurodegenerative diseases. The diseases that can be prevented or treated by the drug include but are not limited to: frontotemporal dementia (FTD), amyotrophic lateral sclerosis (ALS), Alzheimer's disease (AD) and Parkinson's disease (PD), depression, neuropsyciatric disorder, vascular dementia, seizures, retinal dystrophy, age-related macular degeneration, glaucoma, traumatic brain injury, aging, wound healing, stroke, arthritis, atherosclerosis, etc.
本发明的有益效果:Beneficial effects of the present invention:
(1)发明人通过广泛而深入的研究,经过大量的筛选,成功获得多个抗人分拣蛋白1的纳米抗体。具体地,本发明利用人源的分拣蛋白1胞外段抗原蛋白免疫骆驼,获得高质量的免疫纳米抗体基因文库。然后将分拣蛋白1蛋白分子偶联在酶标板上,以此形式的抗原利用噬菌体展示技术筛选免疫纳米抗体基因库(骆驼重链抗体噬菌体展示基因库),从而获得了分拣蛋白1特异性的纳米抗体基因。本发明的抗体能够阻断细胞表面分拣蛋白1与颗粒蛋白前体的相互作用,亲和力高,特异性强;能够有效结合分拣蛋白1蛋白,且与对照抗体AL001的结合活性相近。此外,相关实验结果表明,本发明中获得的多个纳米抗体可以显著提高U251细胞培养基中颗粒蛋白前体的水平,且提高细胞外颗粒蛋白前体水平的能力接近或者优于对照抗体AL001,具有潜在的治疗多种神经退行性疾病的能力。(1) The inventors have successfully obtained multiple anti-human sortilin 1 nanobodies through extensive and in-depth research and a large number of screenings. Specifically, the present invention uses human sortilin 1 extracellular segment antigen protein to immunize camels to obtain a high-quality immune nanoantibody gene library. Then the sortilin 1 protein molecule is coupled to an ELISA plate, and the immune nanoantibody gene library (camel heavy chain antibody phage display gene library) is screened using phage display technology in this form of antigen, thereby obtaining a sortilin 1-specific nanoantibody gene. The antibody of the present invention can block the interaction between sortilin 1 and granulin precursor on the cell surface, with high affinity and strong specificity; it can effectively bind to sortilin 1 protein, and its binding activity is similar to that of the control antibody AL001. In addition, relevant experimental results show that the multiple nanoantibodies obtained in the present invention can significantly increase the level of granulin precursor in the culture medium of U251 cells, and the ability to increase the level of extracellular granulin precursor is close to or better than the control antibody AL001, and has the potential to treat a variety of neurodegenerative diseases.
(2)本发明通过对纳米抗体重组表达载体上的元件(包括启动子、内含子、信号肽、polyA等)进行筛选和优化,得到了一种能提升纳米抗体表达水平的载体,该表达载体构建过程简单,并且能有效提升纳米抗体在哺乳动物体内的表达水平,帮助纳米抗体在体内持续高效的表达,从而可以解决纳米抗体药物目前面临的因半衰期短而体内浓度过低的问题。基于该表达元件组合的AAV递送基因,其表达水平较其他优选组合高10倍以上,较常用的表达元件组合高20倍以上,且能在血清中长期维持较高的纳米抗体水平。(2) The present invention screens and optimizes the elements (including promoters, introns, signal peptides, polyA, etc.) on the recombinant expression vector of nano antibodies to obtain a vector that can improve the expression level of nano antibodies. The construction process of the expression vector is simple, and it can effectively improve the expression level of nano antibodies in mammals, helping nano antibodies to be expressed continuously and efficiently in vivo, thereby solving the problem of low in vivo concentration due to short half-life currently faced by nano antibody drugs. The AAV delivery gene based on this expression element combination has an expression level that is more than 10 times higher than other preferred combinations, more than 20 times higher than commonly used expression element combinations, and can maintain a high level of nano antibodies in serum for a long time.
(3)本发明通过优化的AAV载体在体内高表达抗分拣蛋白1的纳米抗体,成功解决纳米抗体类药物外源性给药时半衰期过短的问题,实现了有效的药物动力学功能。动物体内实验显示,单次的AAV注射可以持续提高人源化疾病模型的血清和脑脊液中颗粒蛋白前体水平。鉴于目前还没有用AAV表达纳米抗体治疗或预防疾病的报道,本发明具有开发成治疗多种神经退行性疾病的新型基因治疗药物的潜力。(3) The present invention uses an optimized AAV vector to highly express anti-sortin 1 nanobody in vivo, successfully solving the problem of short half-life of nanobody drugs when administered exogenously, and achieving effective pharmacokinetic function. Animal in vivo experiments have shown that a single AAV injection can continuously increase the level of progranulin in the serum and cerebrospinal fluid of humanized disease models. Given that there are currently no reports on the use of AAV to express nanobodies to treat or prevent diseases, the present invention has the potential to be developed into a new gene therapy drug for the treatment of a variety of neurodegenerative diseases.
图1为实施例1中重组蛋白的SDS-PAGE检测结果。FIG. 1 is the SDS-PAGE detection result of the recombinant protein in Example 1.
图2为对三轮筛选后分拣蛋白1阳性文库中随机挑选的576个单克隆进行扩增、诱导表达后,酶联免疫吸附试验鉴定细菌周质空间抽提物中人分拣蛋白1结合纳米抗体的情况。Figure 2 shows the situation of human Sortilin 1 binding nanoantibodies in bacterial periplasmic space extracts identified by ELISA after amplification and induction of expression of 576 monoclonal clones randomly selected from the Sortilin 1 positive library after three rounds of screening.
图3为26个抗人分拣蛋白1纳米抗体竞争性抑制人分拣蛋白1与其配体颗粒蛋白前体结合的ELISA鉴定结果。FIG. 3 shows the ELISA identification results of 26 anti-human sortilin 1 nanobodies competitively inhibiting the binding of human sortilin 1 to its ligand granule protein precursor.
图4-图9为流式细胞术检测不同抗体对细胞表面分拣蛋白1结合能力的结果。Figures 4 to 9 are the results of flow cytometry detection of the ability of different antibodies to bind to cell surface sortilin 1.
图10为Nb426交叉识别不同物种来源sort1的结果。FIG10 shows the results of Nb426 cross-recognition of sort1 from different species.
图11-图16为Gator检测纳米抗体结合人分拣蛋白1重组蛋白的亲和力测定实验结果。Figures 11-16 are the results of the Gator affinity assay experiment for detecting the binding of nanobodies to human sortilin 1 recombinant protein.
图17为Gator检测多个纳米抗体结合人分拣蛋白1重组蛋白的抗原表位分组(Epitope Binning)实验结果。Figure 17 shows the results of the Gator Epitope Binning experiment to detect multiple nanoantibodies binding to human Sortilin 1 recombinant protein.
图18为采用免疫荧光观察不同温度下纳米抗体结合细胞表面Sort1后内吞的结果。FIG18 shows the results of immunofluorescence observation of the internalization of nanoantibodies after binding to cell surface Sort1 at different temperatures.
图19为纳米抗体处理U251细胞后,细胞培养基中颗粒蛋白前体水平检测的ELISA检测结果。Figure 19 shows the ELISA test results of the level of progranulin in the cell culture medium after U251 cells were treated with nanoantibodies.
图20为用不同浓度的分拣蛋白1抗体(包括纳米抗体Nb171,Nb184和AL001)处理U251细胞后,细胞培养基中颗粒蛋白前体水平检测结果。Figure 20 shows the results of detecting the level of progranulin in the cell culture medium after U251 cells were treated with different concentrations of sortilin 1 antibodies (including nanobodies Nb171, Nb184 and AL001).
图21为sort1蛋白的人源化小鼠的构建示意图。FIG. 21 is a schematic diagram of the construction of humanized mice expressing sort1 protein.
图22为静脉注射不同抗分拣蛋白1纳米抗体后,小鼠血清中颗粒蛋白前体的水平变化情况。Figure 22 shows the changes in the levels of progranulin in mouse serum after intravenous injection of different anti-sortilin-1 nanobodies.
图23为pscAAV-RNY20-VHH质粒图谱。Figure 23 is a pscAAV-RNY20-VHH plasmid map.
图24为注射编码抗体Sort1纳米抗体的AAV和AL001后血清中Progranulin检测的结果。FIG. 24 shows the results of Progranulin detection in serum after injection of AAV encoding Sort1 nanobody and AL001.
图25为给药45天之后小鼠脑脊液中Progranulin水平的检测结果。FIG. 25 shows the results of the detection of Progranulin levels in the cerebrospinal fluid of mice 45 days after administration.
下面结合附图和具体实施例对本发明作进一步说明,以使本领域的技术人员可以更好地理解本发明并能予以实施,但所举实施例不作为对本发明的限定。The present invention is further described below in conjunction with the accompanying drawings and specific embodiments so that those skilled in the art can better understand the present invention and implement it, but the embodiments are not intended to limit the present invention.
下述实施例中涉及的术语解释:Explanation of terms involved in the following embodiments:
在本发明中,术语“本发明抗体”、“本发明的抗体”、“本发明的抗分拣蛋白1纳米抗体”、“本发明分拣蛋白1纳米抗体”、“抗分拣蛋白1纳米抗体”、“分拣蛋白1纳米抗体”具有相同的含义,可互换使用,均指特异性识别和结合于分拣蛋白1(包括人分拣蛋白1)的纳米抗体。In the present invention, the terms "antibody of the present invention", "antibodies of the present invention", "anti-sortilin 1 Nanobody of the present invention", "sortilin 1 Nanobody of the present invention", "anti-sortilin 1 Nanobody", and "sortilin 1 Nanobody" have the same meaning and can be used interchangeably, all referring to Nanobodies that specifically recognize and bind to sortilin 1 (including human sortilin 1).
在本发明中,术语“抗体”或“免疫球蛋白”是有相同结构特征的约150000道尔顿的IgG异四聚糖蛋白,其由两个相同的轻链(L)和两个相同的重链(H)组成。每条轻链通过一个共价二硫键与重链相连,而不同免疫球蛋白同种型的重链间的二硫键数目不同。每条重链和轻链也有规则间隔的链内二硫键。每条重链的一端有可变区(VH),其后是多个恒定区。每条轻链的一端有可变区(VL),另一端有恒定区;轻链的恒定区与重链的第一个恒定区相对,轻链的可变区与重链的可变区相对。特殊的氨基酸残基在轻链和重链的可变区之间形成界面。In the present invention, the term "antibody" or "immunoglobulin" refers to an IgG heterotetrameric glycoprotein of about 150,000 daltons with identical structural features, which consists of two identical light chains (L) and two identical heavy chains (H). Each light chain is connected to the heavy chain by a covalent disulfide bond, while the number of disulfide bonds between the heavy chains of different immunoglobulin isotypes varies. Each heavy and light chain also has regularly spaced intrachain disulfide bonds. One end of each heavy chain has a variable region (VH) followed by multiple constant regions. One end of each light chain has a variable region (VL) and the other end has a constant region; the constant region of the light chain is opposite to the first constant region of the heavy chain, and the variable region of the light chain is opposite to the variable region of the heavy chain. Specific amino acid residues form an interface between the variable regions of the light and heavy chains.
在本发明中,术语“单域抗体”、“VHH”、“纳米抗体(nanobody)”、“单域抗体”(single domain antibody,sdAb,或纳米抗体nanobody)具有相同的含义并可互换使用,指克隆抗体重链的可变区,构建仅由一个重链可变区组成的单域抗体(VHH),它是具有完整功能的最小的抗原结合片段。通常先获得天然缺失轻链和重链恒定区1(CH1)的抗体后,再克隆抗体重链的可变区,构建仅由一个重链可变区组成的单域抗体(VHH)。In the present invention, the terms "single domain antibody", "VHH", "nanobody", "single domain antibody" (sdAb, or nanobody) have the same meaning and can be used interchangeably, referring to cloning the variable region of the antibody heavy chain to construct a single domain antibody (VHH) consisting of only one heavy chain variable region, which is the smallest antigen-binding fragment with complete functions. Usually, an antibody naturally lacking the light chain and heavy chain constant region 1 (CH1) is first obtained, and then the variable region of the antibody heavy chain is cloned to construct a single domain antibody (VHH) consisting of only one heavy chain variable region.
在本发明中,“多价”是指包含多个抗分拣蛋白1纳米抗体VHH链、抗分拣蛋白1纳米抗体,或含抗分拣蛋白1纳米抗体的融合蛋白。In the present invention, "multivalent" refers to a fusion protein comprising multiple anti-sortilin-1 Nanobody VHH chains, anti-sortilin-1 Nanobody, or anti-sortilin-1 Nanobody.
在本发明中,术语“可变”表示抗体中可变区的某些部分在序列上有所不同,它形成了各种特定抗体对其特定抗原的结合和特异性。然而,可变性并不均匀地分布在整个抗体可变区中。它集中于轻链和重链可变区中称为互补决定区(complementarity determining region,CDR)或超变区中的三个片段中。可变区中较保守的部分称为构架区(FR)。天然重链和轻链的可变区中各自包含四个FR区,它们大致上呈beta-折叠构型,由形成连接环的三个CDR相连,在某些情况下可形成部分beta折叠结构。每条链中的CDR通过FR区紧密地靠在一起并与另一链的CDR一起形成了抗体的抗原结合部位(参见Kabat等,NIH Pub1.No.91-3242,卷I,647-669页(1991))。恒定区不直接参与抗体与抗原的结合,但是它们表现出不同的效应功能,例如参与抗体的依赖于抗体的细胞毒性。In the present invention, the term "variable" means that some parts of the variable region in the antibody are different in sequence, which forms the binding and specificity of various specific antibodies to their specific antigens. However, variability is not evenly distributed throughout the variable region of the antibody. It is concentrated in three segments called complementarity determining regions (CDRs) or hypervariable regions in the variable regions of the light chain and heavy chain. The more conservative parts of the variable region are called framework regions (FRs). The variable regions of natural heavy and light chains each contain four FR regions, which are roughly in a beta-folded configuration and are connected by three CDRs that form a connecting loop, and in some cases can form a partial beta-folded structure. The CDRs in each chain are closely together through the FR region and together with the CDRs of the other chain form the antigen binding site of the antibody (see Kabat et al., NIH Pub1. No. 91-3242, Volume I, pp. 647-669 (1991)). The constant region is not directly involved in the binding of the antibody to the antigen, but they exhibit different effector functions, such as participating in the antibody-dependent cytotoxicity of the antibody.
在本发明中,免疫偶联物及融合表达产物包括:药物、毒素、细胞因子(cytokine)、放射性核素、酶和其他诊断或治疗分子与本发明的抗体或其片段结合而形成的偶联物。本发明还包括与所述的抗Sort1纳米抗体或其片段结合的细胞表面标记物或抗原。In the present invention, immunoconjugates and fusion expression products include: drugs, toxins, cytokines (cytokines), radionuclides, enzymes and other diagnostic or therapeutic molecules and antibodies or fragments thereof of the present invention. The present invention also includes cell surface markers or antigens bound to the anti-Sort1 nanobody or fragments thereof.
在本发明中,术语“重链可变区”与“VH”可互换使用。In the present invention, the terms "heavy chain variable region" and "VH" are used interchangeably.
在本发明中,术语“可变区”与“互补决定区”可互换使用。In the present invention, the terms "variable region" and "complementarity determining region" are used interchangeably.
在本发明中,术语“本发明抗体”、“本发明蛋白”、或“本发明多肽”可互换使用,都指特异性结合分拣蛋白1的多肽,例如具有重链可变区的蛋白或多肽。它们可含有或不含起始甲硫氨酸。In the present invention, the terms "antibodies of the present invention", "proteins of the present invention", or "polypeptides of the present invention" are used interchangeably, and all refer to polypeptides that specifically bind to Sortilin 1, such as proteins or polypeptides having a heavy chain variable region. They may or may not contain an initial methionine.
一般,抗体的抗原结合特性可由位于重链可变区的3个特定的区域来描述,称为可变区域(CDR),将该段间隔成4个框架区域(FR),4个FR的氨基酸序列相对比较保守,不直接参与结合反应。这些CDR形成环状结构,通过其间的FR形成的β折叠在空间结构上相互靠近,重链上的CDR和相应轻链上的CDR构成了抗体的抗原结合位点。可以通过比较同类型的抗体的氨基酸序列来确定是哪些氨基酸构成了FR或CDR区域。Generally, the antigen binding properties of an antibody can be described by three specific regions located in the variable region of the heavy chain, called the variable region (CDR). This segment is divided into four framework regions (FR). The amino acid sequences of the four FRs are relatively conservative and do not directly participate in the binding reaction. These CDRs form a ring structure, and the β-folds formed by the FRs in between are close to each other in spatial structure. The CDRs on the heavy chain and the CDRs on the corresponding light chain constitute the antigen binding site of the antibody. The amino acid sequences of antibodies of the same type can be compared to determine which amino acids constitute the FR or CDR region.
本发明不仅包括完整的抗体,还包括具有免疫活性的抗体的片段或抗体与其他序列形成的融合蛋白。因此,本发明还包括所述抗体的片段、衍生物和类似物。The present invention includes not only complete antibodies, but also fragments of antibodies with immunological activity or fusion proteins formed by antibodies and other sequences. Therefore, the present invention also includes fragments, derivatives and analogs of the antibodies.
如本文所用,术语“片段”、“衍生物”和“类似物”是指基本上保持本发明抗体相同的生物学功能或活性的多肽。本发明的多肽片段、衍生物或类似物可以是:(i)有一个或多个保守或非保守性氨基酸残基(优选保守性氨基酸残基)被取代的多肽,而这样的取代的氨基酸残基可以是也可以不是由遗传密码编码的,或(ii)在一个或多个氨基酸残基中具有取代基团的多肽,或(iii)成熟多肽与另一个化合物(比如延长多肽半衰期的化合物,例如聚乙二醇)或多肽(比如延长半衰期的多肽,如抗血清白蛋白的纳米抗体,或者工程化改造的抗体Fc结构域)融合所形成的多肽,或(iv)附加的氨基酸序列融合到此多肽序列而形成的多肽(如前导序列或分泌序列或用来纯化此多肽的序列或蛋白原序列,或与6xHis标签形成的融合蛋白)。根据本文的教导,这些片段、衍生物和类似物属于本领域熟练技术人员公知的范围。As used herein, the terms "fragment", "derivative" and "analog" refer to polypeptides that substantially retain the same biological function or activity as the antibodies of the present invention. The polypeptide fragments, derivatives or analogs of the present invention may be: (i) polypeptides in which one or more conservative or non-conservative amino acid residues (preferably conservative amino acid residues) are substituted, and such substituted amino acid residues may or may not be encoded by the genetic code, or (ii) polypeptides having a substitution group in one or more amino acid residues, or (iii) polypeptides formed by fusion of a mature polypeptide with another compound (such as a compound that prolongs the half-life of the polypeptide, such as polyethylene glycol) or a polypeptide (such as a polypeptide that prolongs the half-life, such as a nanobody against serum albumin, or an engineered antibody Fc domain), or (iv) polypeptides formed by fusion of an additional amino acid sequence to this polypeptide sequence (such as a leader sequence or secretory sequence or a sequence or proprotein sequence used to purify the polypeptide, or a fusion protein formed with a 6xHis tag). According to the teachings herein, these fragments, derivatives and analogs belong to the well-known scope of those skilled in the art.
本发明抗体指具有分拣蛋白1结合活性的、包括上述CDR区的多肽。该术语还包括具有与本发明抗体相同功能的、包含上述CDR区的多肽的变异形式。这些变异形式包括(但并不限于):一个或多个(通常为1-50个,较佳地1-30个,更佳地1-20个,最佳地1-10个)氨基酸的缺失、插入和/或取代,以及在C末端和/或N末端添加一个或数个(通常为20个以内,较佳地为10个以内,更佳地为5个以内)氨基酸。例如,在本领域中,用性能相近或相似的氨基酸进行取代时,通常不会改变蛋白质的功能。又比如,在C末端和/或N末端添加一个或数个氨基酸通常也不会改变蛋白质的功能。该术语还包括本发明抗体的活性片段和活性衍生物。The antibody of the present invention refers to a polypeptide having sortilin 1 binding activity and comprising the above CDR region. The term also includes variant forms of polypeptides comprising the above CDR region and having the same function as the antibody of the present invention. These variant forms include (but are not limited to): one or more (usually 1-50, preferably 1-30, more preferably 1-20, and most preferably 1-10) amino acid deletions, insertions and/or substitutions, and addition of one or several (usually within 20, preferably within 10, and more preferably within 5) amino acids at the C-terminus and/or N-terminus. For example, in the art, when amino acids with similar or similar properties are substituted, the function of the protein is usually not changed. For another example, adding one or several amino acids at the C-terminus and/or N-terminus usually does not change the function of the protein. The term also includes active fragments and active derivatives of the antibodies of the present invention.
该多肽的变异形式包括:同源序列、保守性变异体、等位变异体、天然突变体、诱导突变体、在高或低的严紧度条件下能与本发明抗体的编码DNA杂交的DNA所编码的蛋白、以及利用抗本发明抗体的抗血清获得的多肽或蛋白。 Variant forms of the polypeptide include: homologous sequences, conservative variants, allelic variants, natural mutants, induced mutants, proteins encoded by DNA that can hybridize with the encoding DNA of the antibody of the present invention under high or low stringency conditions, and polypeptides or proteins obtained using antiserum against the antibody of the present invention.
本发明还提供了其他多肽,如包含抗体或其片段的融合蛋白。除了几乎全长的多肽外,本发明还包括了本发明抗体的片段。通常,该片段具有本发明抗体的至少约50个连续氨基酸,较佳地至少约50个连续氨基酸,更佳地至少约80个连续氨基酸,最佳地至少约100个连续氨基酸。The present invention also provides other polypeptides, such as fusion proteins comprising antibodies or fragments thereof. In addition to almost full-length polypeptides, the present invention also includes fragments of antibodies of the present invention. Typically, the fragment has at least about 50 consecutive amino acids of the antibody of the present invention, preferably at least about 50 consecutive amino acids, more preferably at least about 80 consecutive amino acids, and most preferably at least about 100 consecutive amino acids.
在本发明中,“本发明抗体的保守性变异体”指与本发明抗体的氨基酸序列相比,有至多10个,较佳地至多8个,更佳地至多5个,最佳地至多3个氨基酸被性质相似或相近的氨基酸所替换而形成多肽。这些保守性变异多肽最好根据上文所述的氨基酸替换而产生。In the present invention, "conservative variants of the antibodies of the present invention" refer to polypeptides formed by replacing at most 10, preferably at most 8, more preferably at most 5, and most preferably at most 3 amino acids with amino acids having similar or similar properties compared to the amino acid sequence of the antibodies of the present invention. These conservative variant polypeptides are preferably generated according to the amino acid substitutions described above.
本发明还提供了编码上述抗体或其片段或其融合蛋白的多核苷酸分子。本发明的多核苷酸可以是DNA形式或RNA形式。DNA形式包括cDNA、基因组DNA或人工合成的DNA。DNA可以是单链的或是双链的。DNA可以是编码链或非编码链。The present invention also provides a polynucleotide molecule encoding the above-mentioned antibody or its fragment or its fusion protein. The polynucleotide of the present invention can be in the form of DNA or RNA. The DNA form includes cDNA, genomic DNA or artificially synthesized DNA. The DNA can be single-stranded or double-stranded. The DNA can be a coding strand or a non-coding strand.
编码本发明的成熟多肽的多核苷酸包括:只编码成熟多肽的编码序列;成熟多肽的编码序列和各种附加编码序列;成熟多肽的编码序列(和任选的附加编码序列)以及非编码序列。The polynucleotide encoding the mature polypeptide of the present invention includes: a coding sequence encoding only a mature polypeptide; a coding sequence of a mature polypeptide and various additional coding sequences; a coding sequence of a mature polypeptide (and optional additional coding sequences) and non-coding sequences.
术语“编码多肽的多核苷酸”可以是包括编码此多肽的多核苷酸,也可以是还包括附加编码和/或非编码序列的多核苷酸。The term "polynucleotide encoding a polypeptide" may include a polynucleotide encoding the polypeptide, or may include additional coding and/or non-coding sequences.
本发明还涉及与上述的序列杂交且两个序列之间具有至少90%,较佳地至少95%,更佳地至少98%相同性的多核苷酸。本发明特别涉及在严格条件下与本发明所述多核苷酸可杂交的多核苷酸。在本发明中,“严格条件”是指:(1)在较低离子强度和较高温度下的杂交和洗脱,如0.2×SSC,0.1%SDS,60℃;或(2)杂交时加有变性剂,如50%(v/v)甲酰胺,0.1%小牛血清/0.1%Ficoll,42℃等;或(3)仅在两条序列之间的相同性至少在90%以上,更好是95%以上时才发生杂交。并且,可杂交的多核苷酸编码的多肽与成熟多肽有相同的生物学功能和活性。 The present invention also relates to polynucleotides that hybridize with the above-mentioned sequences and have at least 90%, preferably at least 95%, and more preferably at least 98% identity between the two sequences. The present invention particularly relates to polynucleotides that can hybridize with the polynucleotides of the present invention under stringent conditions. In the present invention, "stringent conditions" refer to: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2×SSC, 0.1% SDS, 60°C; or (2) the addition of denaturing agents during hybridization, such as 50% (v/v) formamide, 0.1% calf serum/0.1% Ficoll, 42°C, etc.; or (3) hybridization occurs only when the identity between the two sequences is at least 90%, preferably at least 95%. In addition, the polypeptide encoded by the hybridizable polynucleotide has the same biological function and activity as the mature polypeptide.
本发明的抗体的核苷酸全长序列或其片段通常可以用PCR扩增法、重组法或人工合成的方法获得。一种可行的方法是用人工合成的方法来合成有关序列,尤其是片段长度较短时。通常,通过先合成多个小片段,然后再进行连接可获得序列很长的片段。此外,还可将重链的编码序列和表达标签(如6His)融合在一起,形成融合蛋白。The full-length nucleotide sequence of the antibody of the present invention or its fragment can usually be obtained by PCR amplification, recombination or artificial synthesis. A feasible method is to synthesize the relevant sequence by artificial synthesis, especially when the fragment length is short. Usually, a fragment with a very long sequence can be obtained by synthesizing multiple small fragments first and then connecting them. In addition, the coding sequence of the heavy chain and the expression tag (such as 6His) can be fused together to form a fusion protein.
一旦获得了有关的序列,就可以用重组法来大批量地获得有关序列。这通常是将其克隆入载体,再转入细胞,然后通过常规方法从增殖后的宿主细胞中分离得到有关序列。本发明所涉及的生物分子(核酸、蛋白等)包括以分离的形式存在的生物分子。Once the relevant sequence is obtained, it can be obtained in large quantities by recombinant methods. This is usually done by cloning it into a vector, then transferring it into cells, and then isolating the relevant sequence from the proliferated host cells by conventional methods. The biomolecules (nucleic acids, proteins, etc.) involved in the present invention include biomolecules in isolated form.
目前,已经可以完全通过化学合成来得到编码本发明蛋白(或其片段,或其衍生物)的DNA序列。然后可将该DNA序列引入本领域中已知的各种现有的DNA分子(或如载体)和细胞中。此外,还可通过化学合成将突变引入本发明蛋白序列中。At present, the DNA sequence encoding the protein of the present invention (or its fragment, or its derivative) can be obtained completely by chemical synthesis. The DNA sequence can then be introduced into various existing DNA molecules (or vectors) and cells known in the art. In addition, mutations can also be introduced into the protein sequence of the present invention by chemical synthesis.
本发明还涉及包含上述的适当DNA序列以及适当启动子或者控制序列的载体。这些载体可以用于转化适当的宿主细胞,以使其能够表达蛋白质。The present invention also relates to vectors comprising the above-mentioned appropriate DNA sequence and appropriate promoter or control sequence. These vectors can be used to transform appropriate host cells to enable them to express proteins.
宿主细胞可以是原核细胞,如细菌细胞;或是低等真核细胞,如酵母细胞;或是高等真核细胞,如哺乳动物细胞。代表性例子有:大肠杆菌,链霉菌属;鼠伤寒沙门氏菌的细菌细胞;真菌细胞如酵母;果蝇S2或Sf9的昆虫细胞;CHO、COS7、293细胞的动物细胞等。Host cells can be prokaryotic cells, such as bacterial cells; or lower eukaryotic cells, such as yeast cells; or higher eukaryotic cells, such as mammalian cells. Representative examples include: Escherichia coli, Streptomyces; bacterial cells of Salmonella typhimurium; fungal cells such as yeast; insect cells of Drosophila S2 or Sf9; animal cells such as CHO, COS7, 293 cells, etc.
用重组DNA转化宿主细胞可用本领域技术人员熟知的常规技术进行。当宿主为原核生物如大肠杆菌时,能吸收DNA的感受态细胞可在指数生长期后收获,用CaC12法处理,所用的步骤在本领域众所周知。另一种方法是使用MgC12。如果需要,转化也可用电穿孔的方法进行。当宿主是真核生物,可选用如下的DNA转染方法:磷酸钙共沉淀法,常规机械方法如显微注射、电穿孔,脂质体包装等。 Transformation of host cells with recombinant DNA can be carried out using conventional techniques well known to those skilled in the art. When the host is a prokaryotic organism such as Escherichia coli, competent cells that can absorb DNA can be harvested after the exponential growth phase and treated with the CaCl2 method, the steps used are well known in the art. Another method is to use MgCl2. If necessary, transformation can also be carried out by electroporation. When the host is a eukaryotic organism, the following DNA transfection methods can be selected: calcium phosphate coprecipitation method, conventional mechanical methods such as microinjection, electroporation, liposome packaging, etc.
获得的转化子可以用常规方法培养,表达本发明的基因所编码的多肽。根据所用的宿主细胞,培养中所用的培养基可选自各种常规培养基。在适于宿主细胞生长的条件下进行培养。当宿主细胞生长到适当的细胞密度后,用合适的方法(如温度转换或化学诱导)诱导选择的启动子,将细胞再培养一段时间。The obtained transformant can be cultured by conventional methods to express the polypeptide encoded by the gene of the present invention. Depending on the host cell used, the culture medium used in the culture can be selected from various conventional culture media. Culture is carried out under conditions suitable for the growth of the host cells. After the host cells grow to an appropriate cell density, the selected promoter is induced by a suitable method (such as temperature conversion or chemical induction), and the cells are cultured for a period of time.
在上面的方法中的重组多肽可在细胞内、或在细胞膜上表达、或分泌到细胞外。如果需要,可利用其物理的、化学的和其它特性通过各种分离方法分离和纯化重组的蛋白。这些方法是本领域技术人员所熟知的。这些方法的例子包括但并不限于:常规的复性处理、用蛋白沉淀剂处理(盐析方法)、离心、渗透破菌、超处理、超离心、分子筛层析(凝胶过滤)、吸附层析、离子交换层析、高效液相层析(HPLC)和其它各种液相层析技术及这些方法的结合。The recombinant polypeptide in the above method can be expressed in the cell, on the cell membrane, or secreted outside the cell. If necessary, the recombinant protein can be separated and purified by various separation methods using its physical, chemical and other properties. These methods are well known to those skilled in the art. Examples of these methods include but are not limited to: conventional renaturation treatment, treatment with a protein precipitant (salting out method), centrifugation, osmotic sterilization, ultra-treatment, ultracentrifugation, molecular sieve chromatography (gel filtration), adsorption chromatography, ion exchange chromatography, high performance liquid chromatography (HPLC) and other various liquid chromatography techniques and combinations of these methods.
本发明的抗体可以单独使用,也可与可检测标记物(为诊断目的)、治疗剂、PK(蛋白激酶)修饰部分或任何以上这些物质的组合结合或偶联。The antibodies of the invention may be used alone or in combination or conjugated to a detectable marker (for diagnostic purposes), a therapeutic agent, a PK (protein kinase) modifying moiety, or any combination of these.
用于诊断目的可检测标记物包括但不限于:荧光或发光标记物、放射性标记物、MRI(磁共振成像)或CT(电子计算机X射线断层扫描技术)造影剂、或能够产生可检测产物的酶。Detectable labels for diagnostic purposes include, but are not limited to, fluorescent or luminescent labels, radioactive labels, MRI (magnetic resonance imaging) or CT (computed tomography) contrast agents, or enzymes capable of producing a detectable product.
可与本发明抗体结合或偶联的治疗剂包括但不限于:1.放射性核素;2.生物毒,包括多种DNA损伤药物,或者微管蛋白抑制剂;3.细胞因子如IL-2等;4.金纳米颗粒/纳米棒;5.病毒颗粒;6.脂质体;7.纳米磁粒;8.前药激活酶(例如,DT-心肌黄酶(DTD)或联苯基水解酶-样蛋白质(BPHL))等。Therapeutic agents that can be combined or coupled with the antibodies of the present invention include, but are not limited to: 1. radionuclides; 2. biological toxins, including a variety of DNA damaging drugs, or microtubule inhibitors; 3. cytokines such as IL-2, etc.; 4. gold nanoparticles/nanorods; 5. viral particles; 6. liposomes; 7. nanomagnetic particles; 8. prodrug activating enzymes (e.g., DT-diaphorase (DTD) or biphenyl hydrolase-like protein (BPHL)), etc.
分拣蛋白1是一种细胞膜受体蛋白,属于VPS10P超家族,其在细胞内蛋白转运、神经发育和代谢调控等方面发挥重要作用。分拣蛋白1可以结合多种蛋白质和配体,如神经生长因子、神经营养因子、糖蛋白等,通过内吞作用将它们从细胞表面带入内质网和转运囊泡系统,参与它们的定位和运输过程。分拣蛋白1在神经元中与多个信号通路相互作用,其参与神经元的生长和发育调控,并还与突触传递、突触可塑性和记忆形成等神经功能密切相关。分拣蛋白1在神经系统中扮演重要角色,研究表明分拣蛋白1的功能与神经退行性疾病有关。此外,分拣蛋白1在前列腺癌、卵巢癌、三阴性乳腺癌、皮肤癌、肺癌、子宫内膜癌、结直肠癌和胰腺癌等癌症中会过度表达,并在乳腺癌转移的过程中帮助癌细胞的吸附和侵染。Sortilin 1 is a cell membrane receptor protein belonging to the VPS10P superfamily. It plays an important role in intracellular protein transport, neural development and metabolic regulation. Sortilin 1 can bind to a variety of proteins and ligands, such as nerve growth factor, neurotrophic factor, glycoprotein, etc., and bring them from the cell surface into the endoplasmic reticulum and transport vesicle system through endocytosis, participating in their localization and transport process. Sortilin 1 interacts with multiple signaling pathways in neurons. It participates in the growth and development regulation of neurons and is also closely related to neural functions such as synaptic transmission, synaptic plasticity and memory formation. Sortilin 1 plays an important role in the nervous system. Studies have shown that the function of Sortilin 1 is related to neurodegenerative diseases. In addition, Sortilin 1 is overexpressed in cancers such as prostate cancer, ovarian cancer, triple-negative breast cancer, skin cancer, lung cancer, endometrial cancer, colorectal cancer and pancreatic cancer, and helps the adsorption and invasion of cancer cells during breast cancer metastasis.
药物组合物Pharmaceutical composition
本发明还提供了一种组合物。优选地,所述的组合物是药物组合物,它含有上述的抗体或其活性片段或其融合蛋白,以及药学上可接受的载体。通常,可将这些物质配制于无毒的、惰性的和药学上可接受的水性载体介质中,其中pH通常约为5-8,较佳地pH约为6-8,尽管pH值可随被配制物质的性质以及待治疗的病症而有所变化。配制好的药物组合物可以通过常规途径进行给药,其中包括(但并不限于):腹膜内、静脉内、或局部给药。The present invention also provides a composition. Preferably, the composition is a pharmaceutical composition, which contains the above-mentioned antibody or its active fragment or its fusion protein, and a pharmaceutically acceptable carrier. Generally, these substances can be formulated in a non-toxic, inert and pharmaceutically acceptable aqueous carrier medium, wherein the pH is generally about 5-8, preferably about 6-8, although the pH value may vary with the properties of the formulated substance and the condition to be treated. The formulated pharmaceutical composition can be administered by conventional routes, including (but not limited to): intraperitoneal, intravenous, or topical administration.
本发明的药物组合物含有安全有效量(如0.001-99wt%,较佳地0.01-90wt%,更佳地0.1-80wt%)的本发明上述的抗体(或其偶联物)以及药学上可接受的载体或赋形剂。这类载体包括(但并不限于):盐水、缓冲液、葡萄糖、水、甘油、乙醇、及其组合。药物制剂应与给药方式相匹配。本发明的药物组合物可以被制成针剂形式,例如用生理盐水或含有葡萄糖和其他辅剂的水溶液通过常规方法进行制备。药物组合物如针剂、溶液宜在无菌条件下制造。活性成分的给药量是治疗有效量,例如每天约10微克/千克体重-约50毫克/千克体重。此外,本发明的多肽还可与其他治疗剂一起使用。The pharmaceutical composition of the present invention contains a safe and effective amount (such as 0.001-99wt%, preferably 0.01-90wt%, more preferably 0.1-80wt%) of the above-mentioned antibody (or its conjugate) of the present invention and a pharmaceutically acceptable carrier or excipient. Such carriers include (but are not limited to): saline, buffer, glucose, water, glycerol, ethanol, and combinations thereof. The pharmaceutical preparation should match the mode of administration. The pharmaceutical composition of the present invention can be prepared in the form of an injection, for example, by conventional methods using physiological saline or an aqueous solution containing glucose and other adjuvants. Pharmaceutical compositions such as injections and solutions are preferably manufactured under sterile conditions. The dosage of the active ingredient is a therapeutically effective amount, for example, about 10 micrograms/kg body weight to about 50 milligrams/kg body weight per day. In addition, the polypeptide of the present invention can also be used with other therapeutic agents.
使用药物组合物时,是将安全有效量的免疫偶联物施用于哺乳动物,其中该安全有效量通常至少约10微克/千克体重,而且在大多数情况下不超过约100毫克/千克体重,较佳地该剂量是约10微克/千克体重-约50毫克/千克体重。当然,具体剂量还应考虑给药途径、病人健康状况等因素,这些都是熟练医师技能范围之内的。 When using a pharmaceutical composition, a safe and effective amount of the immunoconjugate is administered to a mammal, wherein the safe and effective amount is usually at least about 10 micrograms/kg body weight, and in most cases does not exceed about 100 milligrams/kg body weight, preferably the dosage is about 10 micrograms/kg body weight to about 50 milligrams/kg body weight. Of course, the specific dosage should also take into account factors such as the route of administration and the patient's health status, which are all within the skill range of skilled physicians.
典型的,所述抗分拣蛋白1纳米抗体可包括至少两条VHH链,且VHH链之间通过连接子进行连接。Typically, the anti-sortilin-1 nanobody may include at least two VHH chains, and the VHH chains are connected by a linker.
在本发明中,所述连接子选自以下序列:(GaSb)x—(GmSn)y,其中a,b,m,n,x,y=0或1或2或3或4或5或6或7或8或9或10(较佳地,a=4而b=1,m=3而n=1),即所述连接子选自下组:GGGGSGGGS。In the present invention, the linker is selected from the following sequence: (GaSb)x—(GmSn)y, wherein a, b, m, n, x, y=0 or 1 or 2 or 3 or 4 or 5 or 6 or 7 or 8 or 9 or 10 (preferably, a=4 and b=1, m=3 and n=1), that is, the linker is selected from the following group: GGGGSGGGS.
标记的抗体Labeled Antibodies
在本发明中,所述抗体带有可检测标记物。更佳地,所述的标记物选自下组:同位素、胶体金标记物、有色标记物或荧光标记物。In the present invention, the antibody carries a detectable marker. More preferably, the marker is selected from the group consisting of an isotope, a colloidal gold marker, a colored marker or a fluorescent marker.
胶体金标记可采用本领域技术人员已知的方法进行。在本发明的一个优选的方案中,分拣蛋白1的抗体用胶体金标记,得到胶体金标记的抗体。Colloidal gold labeling can be carried out by methods known to those skilled in the art. In a preferred embodiment of the present invention, the antibody of sortilin 1 is labeled with colloidal gold to obtain a colloidal gold-labeled antibody.
本发明的抗分拣蛋白1纳米抗体能够有效结合细胞表面的分拣蛋白1蛋白。The anti-sortilin 1 nanobody of the present invention can effectively bind to the sortilin 1 protein on the cell surface.
检测方法Detection Methods
本发明还涉及检测分拣蛋白1蛋白的方法。该方法步骤大致如下:获得细胞和/或组织样本;将样本溶解在介质中;检测在所述溶解的样本中分拣蛋白1蛋白的水平。The present invention also relates to a method for detecting Sortilin 1 protein. The method generally comprises the following steps: obtaining a cell and/or tissue sample; dissolving the sample in a medium; and detecting the level of Sortilin 1 protein in the dissolved sample.
在本发明的检测方法中,所使用的样本没有特别限制,代表性的例子是存在于细胞保存液中的含细胞的样本。In the detection method of the present invention, the sample used is not particularly limited, and a representative example is a sample containing cells in a cell storage solution.
试剂盒Reagent test kit
本发明还提供了一种含有本发明的抗体(或其片段)或检测板的试剂盒,在本发明的一个优选例中,所述的试剂盒还包括容器、使用说明书、缓冲剂等。The present invention also provides a kit containing the antibody (or fragment thereof) or the detection plate of the present invention. In a preferred embodiment of the present invention, the kit further includes a container, instructions for use, a buffer, and the like.
本发明还提供了用于检测分拣蛋白1水平的检测试剂盒,该试剂盒包括识别分拣蛋白1蛋白的抗体,用于溶解样本的裂解介质,检测所需的通用试剂和缓冲液,如各种缓冲液、检测标记、检测底物等。该检测试剂盒可以是体外诊断装置。The present invention also provides a detection kit for detecting the level of sortilin 1, which includes an antibody that recognizes sortilin 1 protein, a lysis medium for dissolving the sample, and universal reagents and buffers required for detection, such as various buffers, detection labels, detection substrates, etc. The detection kit can be an in vitro diagnostic device.
本发明的另一个关键内容是采用AAV载体内源性表达抗分拣蛋白1的纳米抗体。采用我们优化的表达原件,包括特定的启动子、信号肽、终止子等,提高纳米抗体在细胞内表达并分泌出细胞的效率,并在表达框的上下游添加用于反向重复序列(ITR)从而获得用于AAV包装的基因载体,通过常规方法包装并纯化携带该目的基因的AAV病毒,可以用于在病人或实验动物体内表达识别分拣蛋白1的纳米抗体。作为结果,AAV介导内源性表达的纳米抗体可以有效抑制分拣蛋白1的功能,降低颗粒蛋白前体(PGRN)的降解,间接提高功能性PGRN的水平,从而实现对多种神经退行性疾病的治疗。这种用AAV高水平内源性表达纳米抗体的方案,解决了纳米抗体药物半衰期过短的问题,可以实现一次给药长期收益的治疗目的。Another key content of the present invention is to use AAV vectors to endogenously express nanobodies against sorting protein 1. We use our optimized expression elements, including specific promoters, signal peptides, terminators, etc., to improve the efficiency of nanobodies expressed in cells and secreted out of cells, and add inverted repeat sequences (ITR) upstream and downstream of the expression frame to obtain gene vectors for AAV packaging. The AAV virus carrying the target gene is packaged and purified by conventional methods, which can be used to express nanobodies that recognize sorting protein 1 in patients or experimental animals. As a result, nanobodies mediated by AAV endogenous expression can effectively inhibit the function of sorting protein 1, reduce the degradation of granule protein precursor (PGRN), and indirectly increase the level of functional PGRN, thereby achieving the treatment of various neurodegenerative diseases. This scheme of using AAV to endogenously express nanobodies at a high level solves the problem of too short half-life of nanobody drugs, and can achieve the therapeutic purpose of long-term benefits from a single administration.
下列实施例中未注明具体条件的实验方法,通常按照常规条件,例如(Sambrook和Russel1等人,分子克隆:实验室手册(Molecular Cloning-ALaboratory Manual)(第三版)(2001)CSHL出版社)中所述的条件,或按照制造厂商所建议的条件。除非另外说明,否则百分比和份数按重量计算。The experimental methods in the following examples where specific conditions are not specified are generally carried out under conventional conditions, such as those described in (Sambrook and Russell et al., Molecular Cloning: A Laboratory Manual (3rd Edition) (2001) CSHL Press), or according to the conditions recommended by the manufacturer. Unless otherwise stated, percentages and parts are calculated by weight.
本发明涉及的序列信息如下表。The sequence information involved in the present invention is shown in the following table.
表1纳米抗体序列列表
Table 1 List of Nanobody Sequences
表4纳米抗体序列列表
Table 4 List of Nanobody Sequences
实施例1人分拣蛋白1胞外段融合蛋白表达Example 1 Expression of human sortilin 1 extracellular segment fusion protein
人Sortilin-Fc融合蛋白的表达纯化:利用哺乳动物细胞Expi-293F瞬转表达人分拣蛋白1胞外段蛋白:将已经克隆有人分拣蛋白1胞外段基因的pcDNA3.1-H-SORT1-hFc重组质粒与转染试剂聚乙烯亚胺(PEI)混合后,转染至Expi-293F细胞;37℃,5%CO2摇床培养箱中培养5天;随后收集细胞上清,与Protein A珠子在室温下结合1h;再用磷酸盐缓冲液pH 7.0洗涤珠子后,用0.1M pH3.0甘氨酸溶液洗脱蛋白;再将洗脱的蛋白超滤至磷酸盐缓冲溶液中,测定产量后取样进行SDS-PAGE检测。检测结果如图1中A所示,表达纯化的H-SORT1-hFc蛋白蛋白纯度大于90%,可用于骆驼免疫及抗体筛选(其中,M代表Marker,1泳道为带有Fc结构域的人分拣蛋白1蛋白)。Expression and purification of human Sortilin-Fc fusion protein: Transient expression of human sortilin 1 extracellular segment protein using mammalian cells Expi-293F: Mix the pcDNA3.1-H-SORT1-hFc recombinant plasmid cloned with the human sortilin 1 extracellular segment gene with the transfection reagent polyethyleneimine (PEI), and transfect it into Expi-293F cells; culture in a shaker incubator at 37°C, 5% CO2 for 5 days; then collect the cell supernatant and bind it to Protein A beads at room temperature for 1 hour; then wash the beads with phosphate buffer pH 7.0, and elute the protein with 0.1M pH3.0 glycine solution; then ultrafilter the eluted protein into phosphate buffer solution, determine the yield and take a sample for SDS-PAGE detection. The test results are shown in Figure 1A. The purity of the expressed and purified H-SORT1-hFc protein is greater than 90%, and can be used for camel immunization and antibody screening (where M represents Marker, and lane 1 is human sortilin 1 protein with Fc domain).
人Sortilin-HisTag融合蛋白的表达纯化:利用哺乳动物细胞Expi-293F瞬转表达人分拣蛋白1胞外段蛋白:将已经克隆有人分拣蛋白1胞外段基因的pcDNA3.1-H-SORT1-Hisx6重组质粒与转染试剂PEI混合后,转染至Expi-293F细胞;37℃,5%CO2摇床培养箱中培养5天;随后收集细胞上清,与Ni亲和层析柱珠结合后,用300mM咪唑、500mM咪唑溶液洗脱蛋白;再将洗脱的蛋白超滤至PBS溶液中,测定产量后取样进行SDS-PAGE检测。检测结果如图1中B所示,表达纯化的H-SORT1-Hisx6蛋白纯度大于90%,可用于骆驼免疫及抗体筛选(其中,M代表Marker,2泳道为带有Hisx6标签的人Sortilin蛋白)。Expression and purification of human Sortilin-HisTag fusion protein: transient expression of human Sortilin 1 extracellular segment protein using mammalian cells Expi-293F: pcDNA3.1-H-SORT1-Hisx6 recombinant plasmid cloned with human Sortilin 1 extracellular segment gene was mixed with transfection reagent PEI and transfected into Expi-293F cells; cultured in a shaking incubator at 37°C and 5% CO 2 for 5 days; then the cell supernatant was collected, bound to Ni affinity chromatography column beads, and the protein was eluted with 300mM imidazole and 500mM imidazole solution; the eluted protein was then ultrafiltered into PBS solution, and the yield was measured and sampled for SDS-PAGE detection. The detection results are shown in B in Figure 1. The purity of the expressed and purified H-SORT1-Hisx6 protein is greater than 90%, which can be used for camel immunization and antibody screening (where M represents Marker, and lane 2 is human Sortilin protein with Hisx6 tag).
实施例2骆驼免疫文库构建以及抗人分拣蛋白1纳米抗体的筛选和表达纯化 Example 2 Construction of camel immune library and screening, expression and purification of anti-human sortilin 1 nanobody
将纯化的人Sortilin-Hisx6融合蛋白与弗氏佐剂1:1等比例混合,采用多点皮下注射的方法对一只健康的羊驼进行四轮免疫,期间抽取少量的血液分离血清,进行血清效价的检测。在最后一次免疫结束7-10天后采集100mL的外周血,并使用Ficoll淋巴细胞分离液(GE Healthcare 17-1440-03 FICOLL PAQUE PLUS)进行单个核细胞(PBMC)的分离。Purified human Sortilin-Hisx6 fusion protein was mixed with Freund's adjuvant in a 1:1 ratio, and a healthy alpaca was immunized four times by multi-point subcutaneous injection. During the period, a small amount of blood was drawn to separate serum for serum titer detection. 100 mL of peripheral blood was collected 7-10 days after the last immunization, and Ficoll lymphocyte separation medium (GE Healthcare 17-1440-03 FICOLL PAQUE PLUS) was used to separate mononuclear cells (PBMC).
采用酚氯仿抽提PBMC的总mRNA,采用SuperScriptTMIV First-Strand cDNA Synthesis Reaction试剂盒(Thermo,18091200)将RNA逆转率为cDNA。用cDNA为模板,用巢式PCR扩增得到重链可变区片段(Q5 High-Fidelity 2X MasterNEB,M0492L)。两轮PCR所用的引物如下表3所示:Total mRNA of PBMC was extracted with phenol chloroform, and RNA was converted into cDNA using SuperScript TM IV First-Strand cDNA Synthesis Reaction Kit (Thermo, 18091200). Using cDNA as a template, nested PCR was used to amplify the heavy chain variable region fragment (Q5 High-Fidelity 2X Master NEB, M0492L). The primers used in the two rounds of PCR are shown in Table 3 below:
表3巢式PCR扩增VHH基因所用引物
Table 3 Primers used for nested PCR amplification of VHH genes
用Not1和Bstx1限制性内切酶,将第二轮PCR的胶回收的抗体片段和噬菌体载体pADL分别酶切,将酶切产物进行琼脂糖电泳并纯化,之后进行酶连反应。将酶连产物电转化进入TG1感受态细胞(唯地生物,DE1055M),构建含有纳米抗体片段的大肠杆菌文库。克隆计数表明,文库的库容在5E8;随机挑选40个单克隆进行测序,测序结果显示纳米抗体基因的插入率在95%左右。The antibody fragments recovered from the gel of the second round of PCR and the phage vector pADL were digested separately with Not1 and Bstx1 restriction endonucleases, and the digested products were subjected to agarose electrophoresis and purified, followed by enzyme ligation reaction. The enzyme ligation products were electrotransformed into TG1 competent cells (Weidi Biotechnology, DE1055M) to construct an Escherichia coli library containing nanobody fragments. The clone count showed that the library capacity was 5E8; 40 single clones were randomly selected for sequencing, and the sequencing results showed that the insertion rate of the nanobody gene was about 95%.
将获得的分拣蛋白1免疫文库扩增后,在对数生长期加入VCSM13辅助噬菌体,37℃侵染细菌1小时;离心细菌培养液后,弃去上清并用带有抗生素和0.5%葡萄糖的2xYT培养基重悬细菌,在恒温摇床30℃、225rpm过夜包装噬菌体。次日用聚乙二醇/氯化钠沉淀噬菌体颗粒,并利用噬菌体展示技术进行文库筛选,经3轮“吸附-洗涤-富集”的筛选过程,富集表达结合H-Sort1-Hisx6融合蛋白的纳米抗体噬菌体群。从以上富集的噬菌群中随机挑选的576个单克隆进行扩增、IPTG诱导表达后,用低渗溶液PPB(磷酸盐蛋白胨缓冲液)涨破细菌外壁获得周质蛋白抽提物(PPE),采用ELISA鉴定PPE与人分拣蛋白1(ECD)蛋白的结合。结果显示,576个随机克隆中有117个与Sortlilin结合(图2,ELISA读数超过背景5倍以上的克隆被定义为阳性克隆)。After the obtained sorted protein 1 immune library was amplified, VCSM13 helper phage was added in the logarithmic growth phase, and the bacteria were infected at 37°C for 1 hour; after centrifuging the bacterial culture, the supernatant was discarded and the bacteria were resuspended in 2xYT medium with antibiotics and 0.5% glucose, and the phage was packaged overnight in a constant temperature shaker at 30°C and 225rpm. The next day, the phage particles were precipitated with polyethylene glycol/sodium chloride, and the library was screened using phage display technology. After three rounds of "adsorption-washing-enrichment" screening, the nano-antibody phage group that binds to the H-Sort1-Hisx6 fusion protein was enriched. 576 monoclones randomly selected from the above enriched phage group were amplified and IPTG-induced expression was performed. The periplasmic protein extract (PPE) was obtained by bursting the bacterial outer wall with a hypotonic solution PPB (phosphate peptone buffer), and the binding of PPE to human sorted protein 1 (ECD) protein was identified by ELISA. The results showed that 117 out of 576 random clones bound to Sortlilin ( FIG. 2 , clones with ELISA readings more than 5 times the background were defined as positive clones).
为了鉴定这些克隆对分拣蛋白1的结合是否具有特异性,用选中的117个克隆与胰岛素包被ELISA平板相互作用,结果显示,117个克隆中的108个不与胰岛素发生作用,暗示这些克隆与分拣蛋白1的结合是特异性结合。In order to identify whether these clones have specific binding to Sortilin 1, the selected 117 clones were used to interact with insulin-coated ELISA plates. The results showed that 108 of the 117 clones did not interact with insulin, suggesting that the binding of these clones to Sortilin 1 is specific.
将获得的108个与分拣蛋白1特异性结合的克隆全部进行测序鉴定,将测序获得的25个非重复VHH编码序列克隆到带有人Fc结构域编码基因的pcDNA3.1-VHH-hFc质粒,转染Expi-293F细胞表达VHH-hFc融合蛋白,经过Protein-A磁珠亲和结合和甘氨酸溶液洗脱等步骤,获得纯化的纳米抗体-Fc融合蛋白。All 108 clones that specifically bound to sortilin 1 were sequenced and identified. The 25 non-repetitive VHH coding sequences obtained by sequencing were cloned into the pcDNA3.1-VHH-hFc plasmid with the human Fc domain encoding gene, and Expi-293F cells were transfected to express VHH-hFc fusion protein. After affinity binding with Protein-A magnetic beads and elution with glycine solution, the purified nanobody-Fc fusion protein was obtained.
实施例3抗Sort1纳米抗体竞争颗粒蛋白前体与分拣蛋白1结合的ELISA实验Example 3 ELISA experiment of anti-Sort1 nanobody competing for the binding of progranulin to sortilin 1
用50μL4μg/mL的H-Sort1-His抗原包被ELISA板4℃过夜;用0.1%PBST(磷酸盐吐温缓冲液)洗涤3次,加入5%BSA(牛血清白蛋白)150μL,室温1小时;用0.1%PBST洗涤3次,6ug/mL Bio-PGRN(生物素修饰的人颗粒体蛋白前体)与4ug/mL VHH-Sort1混合加入,单独的6ug/mL Bio-PGRN作为对照1,6ug/mL Bio-PGRN和4ug/mL Hyhel-VHH(非特异性对照纳米抗体)作为对照2,室温1小时;用0.1%PBST洗涤3次,加入50μL辣根过氧化物酶标记链霉亲和素(1:5000)(使用5%BSA稀释),室温1小时;用0.1%PBST洗涤3次,加入50μLTMB(3,3',5,5'-四甲基联苯胺)显色8-10分钟,用50μL终止液终止反应;波长450nm处读取每个孔的吸光度。如果纳米抗体竞争分拣蛋白1与颗粒蛋白前体的结合,将导致与分拣蛋白1结合的Bio-PGRN减少,相应样品的读数会低于未加纳米抗体的样品。ELISA plates were coated with 50 μL 4 μg/mL H-Sort1-His antigen at 4°C overnight; washed 3 times with 0.1% PBST (phosphate-buffered saline-Tween buffer), and 150 μL 5% BSA (bovine serum albumin) was added for 1 hour at room temperature; washed 3 times with 0.1% PBST, 6 ug/mL Bio-PGRN (biotin-modified human progranulin) and 4 ug/mL VHH-Sort1 were mixed and added, and 6 ug/mL Bio-PGRN alone was used as a control 1, and 6 ug/mL B Bio-PGRN and 4ug/mL Hyhel-VHH (non-specific control nanobody) as control 2, 1 hour at room temperature; wash 3 times with 0.1% PBST, add 50μL horseradish peroxidase-labeled streptavidin (1:5000) (diluted with 5% BSA), 1 hour at room temperature; wash 3 times with 0.1% PBST, add 50μLTMB (3,3',5,5'-tetramethylbenzidine) for color development for 8-10 minutes, and terminate the reaction with 50μL stop solution; read the absorbance of each well at a wavelength of 450nm. If the nanobody competes for the binding of sortilin 1 to the granulin precursor, it will lead to a decrease in Bio-PGRN bound to sortilin 1, and the reading of the corresponding sample will be lower than that of the sample without the nanobody.
25个候选抗体对分拣蛋白1与其配体颗粒蛋白前体结合的影响见图3。结果表明,在25个候选抗体中,24个能够在ELISA实验中抑制Sortilin-His融合蛋白与颗粒蛋白前体的相互作用,我们选择对这25个抗体进行进一步的表征分析。The effects of the 25 candidate antibodies on the binding of Sortilin 1 to its ligand progranulin are shown in Figure 3. The results showed that 24 of the 25 candidate antibodies were able to inhibit the interaction between Sortilin-His fusion protein and progranulin in ELISA experiments, and we selected these 25 antibodies for further characterization analysis.
实施例4抗分拣蛋白1纳米抗体与细胞表面抗原的结合活性检测Example 4 Detection of Binding Activity of Anti-Sortilin 1 Nanobody to Cell Surface Antigens
将克隆有人分拣蛋白1蛋白基因全长的pcDNA3.1-HSort1重组质粒与转染试剂PEI混合,转染293T细胞。转染48小时后吹打悬浮收集细胞,离心去除培养基并用预冷的PBS洗涤细胞两次,将细胞悬浮于预冷的含有1%BSA的PBS溶液,细胞计数后按照10万个细胞/孔转移至U形底的96孔板,加入纯化的抗分拣蛋白1纳米抗体VHH-Fc至抗体浓度50ng/ml,在冰上孵育30分钟;用预冷的PBS洗涤细胞2次,加入带有APC荧光标记的抗人Fc结构域的二抗,冰上孵育30分钟,用冷的PBS洗涤细胞2次,悬浮于预冷的含有1%BSA的PBS溶液,用流式细胞仪分析抗体对细胞表面抗原的结合作用。The pcDNA3.1-HSort1 recombinant plasmid cloned with the full-length human sortilin 1 protein gene was mixed with the transfection reagent PEI and transfected into 293T cells. After 48 hours of transfection, the cells were collected by blowing and suspension, the culture medium was removed by centrifugation, and the cells were washed twice with pre-cooled PBS, and the cells were suspended in a pre-cooled PBS solution containing 1% BSA. After counting the cells, 100,000 cells/well were transferred to a U-shaped bottom 96-well plate, and purified anti-sortilin 1 nano antibody VHH-Fc was added to an antibody concentration of 50ng/ml, and incubated on ice for 30 minutes; the cells were washed twice with pre-cooled PBS, and the secondary antibody with anti-human Fc domain labeled with APC fluorescence was added, and incubated on ice for 30 minutes, and the cells were washed twice with cold PBS, and suspended in a pre-cooled PBS solution containing 1% BSA, and the binding of the antibody to the cell surface antigen was analyzed by flow cytometry.
在对照组的平行实验中,采用相同的纳米抗体处理未转染的293T细胞,流式细胞仪检测抗体对细胞表面非特异性蛋白的本底结合。In a parallel experiment of the control group, the same nanoantibody was used to treat untransfected 293T cells, and the background binding of the antibody to nonspecific proteins on the cell surface was detected by flow cytometry.
结果表明,25个候选纳米抗体中,有10个纳米抗体可以高效结合293T细胞表面高表达的人源分拣蛋白1蛋白,并且与对照抗体AL001的结合活性相近,结果见图4-图9和表4;另外的15个纳米抗体结合细胞表面的人源分拣蛋白1的效率较低,说明其亲和力弱于前面的10种抗体;重要的是,所有的25种纳米抗体对于未转染的亲代293T细胞均没有结合,说明这些纳米抗体具有很高的分拣蛋白1特异性。The results showed that among the 25 candidate nanoantibodies, 10 nanoantibodies could efficiently bind to the human sortilin 1 protein highly expressed on the surface of 293T cells, and the binding activity was similar to that of the control antibody AL001, as shown in Figures 4-9 and Table 4; the other 15 nanoantibodies had lower efficiency in binding to the human sortilin 1 on the cell surface, indicating that their affinity was weaker than that of the previous 10 antibodies; importantly, all 25 nanoantibodies did not bind to the untransfected parental 293T cells, indicating that these nanoantibodies have high sortilin 1 specificity.
表4流式细胞仪检测结果
Table 4 Flow cytometry results
实施例5Nb426的交叉识别Example 5 Cross-recognition of Nb426
构建分别带有人、鼠、猴Sort1蛋白编码基因的质粒pcDNA3.1-HSort1,pcDNA3.1-MSort1,pcDNA3.1-CSort1,经过测序和比对确认序列正确。分别转染293T细胞,获得细胞表面带有不同种属Sort1高表达的293T细胞,即hSort1-293T,mSor1-293T,cSort-T。转染48小时后收集并洗涤细胞,将细胞悬浮于预冷的含有1%BSA的PBS溶液,加入纯化的带有人Fc标签的抗Sort1纳米抗体Nb426-Fc或对照抗体AL001,至抗体浓度50ng/ml,在冰上孵育30分钟;用预冷的PBS洗涤细胞2次,加入带有APC荧光标记的抗人Fc结构域的二抗,冰上孵育30分钟,用冷的PBS洗涤细胞2次,悬浮于预冷的含有1%BSA的PBS溶液,用流式细胞仪分析抗体对细胞表面不同种属Sort1蛋白的结合作用。同样的抗体和流程用于未转染的野生型293T细胞,作为非特异性结合的对照。Plasmids pcDNA3.1-HSort1, pcDNA3.1-MSort1, and pcDNA3.1-CSort1 containing the protein coding genes of human, mouse, and monkey Sort1 were constructed, and the sequences were confirmed to be correct after sequencing and alignment. 293T cells were transfected respectively to obtain 293T cells with high expression of Sort1 of different species on the cell surface, namely hSort1-293T, mSor1-293T, and cSort-T. 48 hours after transfection, cells were collected and washed, and suspended in pre-cooled PBS solution containing 1% BSA, and purified anti-Sort1 nanoantibody Nb426-Fc or control antibody AL001 with human Fc tag was added to the antibody concentration of 50ng/ml, and incubated on ice for 30 minutes; cells were washed twice with pre-cooled PBS, and secondary antibodies with APC fluorescent labeling against human Fc domain were added, incubated on ice for 30 minutes, and cells were washed twice with cold PBS, suspended in pre-cooled PBS solution containing 1% BSA, and the binding effect of antibodies on Sort1 proteins of different species on the cell surface was analyzed by flow cytometry. The same antibody and process were used for untransfected wild-type 293T cells as a control for non-specific binding.
如图10所示,与野生型293T细胞的结合相比,抗Sort1纳米抗体Nb426与转染了人、鼠、猴的Sort1蛋白的293T细胞的结合均有明显升高,说明该纳米抗体克隆可以识别来自三个物种的Sort1蛋白;相比而言,对照抗体AL001可以结合来自人和猴的Sort1蛋白,但和小鼠Sort1的结合很弱。这一结果不但说明Nb426具有更好的Sort1种属识别特性,而且其结合的抗原表位不同于对照抗体AL001。As shown in Figure 10, compared with the binding to wild-type 293T cells, the binding of anti-Sort1 nanobody Nb426 to 293T cells transfected with human, mouse, and monkey Sort1 proteins was significantly increased, indicating that the nanobody clone can recognize Sort1 proteins from three species; in comparison, the control antibody AL001 can bind to Sort1 proteins from humans and monkeys, but has a weak binding to mouse Sort1. This result not only shows that Nb426 has better Sort1 species recognition characteristics, but also that the antigen epitope it binds is different from the control antibody AL001.
实施例6采用生物膜干涉技术测定纳米抗体与分拣蛋白1结合的亲和力Example 6 Determination of the affinity of nanobodies for sortilin 1 using biomembrane interferometry
使用Gator Prime系统(Gator Bio)v2.7.3.0728(https://www.gatorbio.com/),进行了生物层干涉法测定,评估纳米抗体与分拣蛋白1融合蛋白的结合动力学。Biolayer interferometry was performed using the Gator Prime system (Gator Bio) v2.7.3.0728 (https://www.gatorbio.com/) to evaluate the binding kinetics of the nanobody to the sortilin-1 fusion protein.
将玻璃hFC探针(Gator Bio)首先浸入Q缓冲液(Gator Bio)约30秒,得到基线信号。然后,将探针装载3-5μg/ml稀释于Q缓冲液中的纳米抗体-Fc融合蛋白(VHH-Fc),持续180秒,然后进行30秒的Q缓冲液洗涤步骤。接下来,将结合VHH-Fc的探针与300-1.2nM的人Sortilin-Hisx6融合蛋白结合,包括无分拣蛋白1蛋白对照(0nM),持续约180秒,然后进行180秒的解离步骤。关联和解离曲线通过GatorPrime(Gator Bio)软件绘制和计算,得出结合动力学值(解离速率常数koff、结合速率常数Kon和解离常数KD)。结果见图11-图16(koff过低的克隆未展示)。The glass hFC probe (Gator Bio) was first immersed in Q buffer (Gator Bio) for about 30 seconds to obtain a baseline signal. The probe was then loaded with 3-5 μg/ml of nanobody-Fc fusion protein (VHH-Fc) diluted in Q buffer for 180 seconds, followed by a 30-second Q buffer wash step. Next, the VHH-Fc-bound probe was bound to 300-1.2 nM of human Sortilin-Hisx6 fusion protein, including a no sortin 1 protein control (0 nM), for about 180 seconds, followed by a 180-second dissociation step. The association and dissociation curves were plotted and calculated by GatorPrime (Gator Bio) software to obtain the binding kinetic values (dissociation rate constant koff, association rate constant Kon, and dissociation constant KD). The results are shown in Figures 11-16 (clones with too low koff are not shown).
采用相同的方法测定对照抗体Latozinemab结合人分拣蛋白1融合蛋白结合动力学,相同条件下获得的结合动力学值(koff、Kon和KD)可以用于和VHH-Fc亲和力进行平行比较。结果见表5。The same method was used to determine the binding kinetics of the control antibody Latozinemab to the human sortilin 1 fusion protein. The binding kinetics values (koff, Kon and KD) obtained under the same conditions can be used for parallel comparison with the VHH-Fc affinity. The results are shown in Table 5.
表5 Gator测定各纳米抗体(VHH-Fc)人Sortilin-Hisx6融合蛋白亲和力数据
Table 5 Gator determination of affinity data of various nanobodies (VHH-Fc) human Sortilin-Hisx6 fusion protein
实施例7采用双联表位分配测定法测定纳米抗体识别分拣蛋白1的抗原表位分组情况Example 7 Using the double epitope distribution assay to determine the grouping of antigen epitopes recognized by nanobodies on sortilin 1
使用Gator Prime系统(Gator Bio)v2.7.3.0728(https://www.gatorbio.com/),进行了生物层干涉法测定,评估各纳米抗体与分拣蛋白1融合蛋白结合的抗原表位。Biolayer interferometry was performed using the Gator Prime system (Gator Bio) v2.7.3.0728 (https://www.gatorbio.com/) to evaluate the antigenic epitopes to which each nanobody binds to the sortilin-1 fusion protein.
将玻璃His-tag探针(Gator Bio)首先浸入Q缓冲液(Gator Bio)约30秒,得到基线信号。然后,将探针装载稀释于Q缓冲液中的100nM人Sortilin-Hisx6融合蛋白,持续180秒;然后进行30秒的Q缓冲液洗涤步骤。接下来,将结合Sortilin-Hisx6的探针与稀释于Q缓冲液的300nM对照抗体AL001结合,持续约180秒;然后将结合了Sortilin-AL001的探针浸入稀释于Q缓冲液的200nM纳米抗体-Fc融合蛋白(VHH-Fc)溶液,进行180秒的双联结合步骤。双联结合曲线通过GatorPrime(Gator Bio)软件绘制和计算,得出不同抗体抗结合原表位的分组情况。 The glass His-tag probe (Gator Bio) was first immersed in Q buffer (Gator Bio) for about 30 seconds to obtain a baseline signal. Then, the probe was loaded with 100nM human Sortilin-Hisx6 fusion protein diluted in Q buffer for 180 seconds; followed by a 30-second Q buffer wash step. Next, the probe bound to Sortilin-Hisx6 was bound to 300nM control antibody AL001 diluted in Q buffer for about 180 seconds; then the probe bound to Sortilin-AL001 was immersed in a 200nM nanobody-Fc fusion protein (VHH-Fc) solution diluted in Q buffer for a 180-second double-binding step. The double-binding curve was drawn and calculated by GatorPrime (Gator Bio) software to obtain the grouping of different antibodies against the original binding epitope.
结果见图17。表明所选纳米抗体结合的抗原表位均不同于对照抗体AL001的结合的抗原表位,说明我们开发的纳米抗体与对照抗体AL001具有明显的差异。The results are shown in Figure 17. It shows that the antigen epitopes bound by the selected nanobodies are different from the antigen epitopes bound by the control antibody AL001, indicating that the nanobodies we developed have obvious differences from the control antibody AL001.
实施例8采用免疫荧光观察纳米抗体结合细胞表面Sort1后,内吞进入细胞内部的过程Example 8 Immunofluorescence observation of the process of nanoantibodies binding to cell surface Sort1 and then internalizing into the cell
细胞膜表面的蛋白受体被抗体结合后,可能由于构象变化而发生内吞作用,这也是多数抗体药物偶联物(ADC)杀伤癌细胞的关键原因。人胶质瘤细胞系U251表面有较高的Sort1受体蛋白,可以作为抗Sort1抗体的功能检测工具。当抗体与细胞表面受体结合后,内吞是一个相对较快的过程。为了更好地观察这个过程,我们利用低温可以抑制内吞的原理,在4℃和37℃两种不同的温度下进行实验,以观察纳米抗体与U251细胞结合后在细胞荧光染色实验中的定位变化,从而观察内吞的发生。下面是具体的实验方案:After the protein receptors on the cell membrane surface are bound by antibodies, they may undergo endocytosis due to conformational changes, which is also the key reason why most antibody-drug conjugates (ADCs) kill cancer cells. The human glioma cell line U251 has a higher level of Sort1 receptor protein on its surface, which can be used as a functional detection tool for anti-Sort1 antibodies. When antibodies bind to cell surface receptors, endocytosis is a relatively fast process. In order to better observe this process, we used the principle that low temperature can inhibit endocytosis and conducted experiments at two different temperatures, 4°C and 37°C, to observe the localization changes of nanoantibodies in cell fluorescence staining experiments after binding to U251 cells, thereby observing the occurrence of endocytosis. The following is a specific experimental plan:
取U251细胞,将其以1*106个细胞的密度铺在装有载玻片的培养皿中,培养24小时,使其附着。去除培养液,加入含有1μg/mL抗Sort1纳米抗体-Fc融合蛋白的PBS溶液,将培养皿分别置于37℃和4℃下孵育15分钟;使用PBS洗涤培养皿中的细胞玻片,共洗涤3次,每次3分钟;使用4%多聚甲醛固定细胞玻片15分钟,然后使用PBS洗涤3次,每次3分钟,去除多余的多聚甲醛;在室温下使用0.5%Triton X-100进行细胞渗透,渗透时间为20分钟,然后使用PBS洗涤3次,每次3分钟,去除多余的Triton X-100;使用含有5%BSA的PBS溶液在室温下进行封闭处理,封闭时间为30分钟;加入稀释好的抗人IgG Fc-FITC抗体(比例为1:500),在室温下避光孵育1小时,用于结合之前的抗Sort1纳米抗体-Fc融合蛋白;之后使用PBS洗涤3次,去除多余的荧光二抗。最后,滴加含有DAPI的防荧光猝灭剂,封装玻片,使用显微镜观察。U251 cells were taken and plated in a culture dish equipped with a glass slide at a density of 1*10 6 cells and cultured for 24 hours to allow them to attach. Remove the culture medium, add PBS solution containing 1 μg/mL anti-Sort1 nanobody-Fc fusion protein, and incubate the culture dish at 37℃ and 4℃ for 15 minutes respectively; wash the cell slides in the culture dish with PBS for 3 times, 3 minutes each time; fix the cell slides with 4% paraformaldehyde for 15 minutes, then wash with PBS 3 times, 3 minutes each time, to remove excess paraformaldehyde; use 0.5% Triton X-100 for cell permeabilization at room temperature for 20 minutes, then wash with PBS 3 times, 3 minutes each time, to remove excess Triton X-100; use PBS solution containing 5% BSA for blocking treatment at room temperature for 30 minutes; add diluted anti-human IgG Fc-FITC antibody (ratio of 1:500), incubate at room temperature in the dark for 1 hour to bind the previous anti-Sort1 nanobody-Fc fusion protein; then wash with PBS 3 times to remove excess fluorescent secondary antibody. Finally, add anti-fluorescence quencher containing DAPI, seal the slides, and observe under a microscope.
结果见图18(Nb07为Nb171,Nb08为Nb184)。免疫荧光实验结果显示,在37℃的温水浴条件下,抗Sort1纳米抗体可以在15分钟内迅速进入细胞内部,其荧光信号会以内吞小体的形式出现在细胞质中,并且逐渐聚集在细胞核附近的区域。相反地,在4℃的低温处理下,抗Sort1纳米抗体只会结合到细胞膜上的Sort1蛋白,而不会发生内吞。荧光信号可以反映出整个细胞的完整形状。这些结果说明,我们的纳米抗体结合Sort1后,可以高效内吞进入细胞,具有开发成ADC类抗肿瘤药物的潜力。The results are shown in Figure 18 (Nb07 is Nb171, Nb08 is Nb184). The results of the immunofluorescence experiment showed that under the condition of a warm water bath at 37°C, the anti-Sort1 nanobody can quickly enter the cell within 15 minutes, and its fluorescence signal will appear in the cytoplasm in the form of endosomes and gradually accumulate in the area near the nucleus. On the contrary, under low-temperature treatment at 4°C, the anti-Sort1 nanobody will only bind to the Sort1 protein on the cell membrane, and will not be internalized. The fluorescent signal can reflect the complete shape of the entire cell. These results show that after our nanoantibodies bind to Sort1, they can be efficiently internalized into cells and have the potential to be developed into ADC anti-tumor drugs.
实施例9纳米抗体处理U251细胞后,细胞培养基中颗粒蛋白前体水平的测定Example 9 Determination of progranulin levels in cell culture medium after nanobody treatment of U251 cells
为了检验抗Sort1纳米抗体是否可以提高progranulin的水平,我们用抗体对体外培养的U251细胞进行了处理。具体而言,将对数生长期的U251细胞铺到96孔细胞培养板中,每个孔1E4个细胞,置于含有5%CO2的37℃细胞培养箱。铺板24小时之后加入工作浓度为40nM的VHH-Fc纳米抗体或同样摩尔浓度的对照抗体AL001,72小时后取细胞培养上清,用颗粒蛋白前体ELISA KIT(EAGLE BIOSCIENCES Cat#:E103)检测其中颗粒蛋白前体的浓度。检测方法为:取细胞上清用试剂盒提供的稀释缓冲液稀释15倍;向试剂盒的每个ELISA孔加入50uL试剂盒中提供的抗体偶联物和50ul稀释的样品(包括抗体处理过的细胞培养上清,颗粒蛋白前体标准品溶液以及阳性对照),室温摇床孵育1小时(≥350rpm);弃去上清,用洗涤液洗5次;加入100uL试剂盒提供的酶偶联物室温摇床孵育30分钟(≥350rpm);弃去上清,用洗涤液洗5次;加入100uL试剂盒提供的底物溶液室温避光孵育30分钟;每孔加入100uL终止液,在30分钟之内检测450nm的吸收光。数据分析时,根据标准样品的吸光度曲线换算出细胞培养上清中颗粒蛋白前体浓度。To test whether anti-Sort1 nanobodies can increase the level of progranulin, we treated U251 cells cultured in vitro with antibodies. Specifically, U251 cells in the logarithmic growth phase were plated in a 96-well cell culture plate, with 1E4 cells per well, and placed in a 37°C cell culture incubator containing 5% CO 2. 24 hours after plating, VHH-Fc nanobodies at a working concentration of 40nM or control antibody AL001 at the same molar concentration were added. After 72 hours, the cell culture supernatant was taken and the concentration of progranulin was detected using progranulin ELISA KIT (EAGLE BIOSCIENCES Cat#: E103). The detection method is as follows: take the cell supernatant and dilute it 15 times with the dilution buffer provided by the kit; add 50uL of the antibody conjugate provided in the kit and 50ul of the diluted sample (including the cell culture supernatant treated with the antibody, the granulin precursor standard solution and the positive control) to each ELISA well of the kit, and incubate at room temperature for 1 hour (≥350rpm); discard the supernatant and wash 5 times with the washing solution; add 100uL of the enzyme conjugate provided by the kit and incubate at room temperature for 30 minutes (≥350rpm); discard the supernatant and wash 5 times with the washing solution; add 100uL of the substrate solution provided by the kit and incubate at room temperature for 30 minutes in the dark; add 100uL of the stop solution to each well and detect the absorption light at 450nm within 30 minutes. When analyzing the data, the concentration of granulin precursor in the cell culture supernatant is calculated according to the absorbance curve of the standard sample.
结果表明所选纳米抗体均能提高U251细胞培养基中颗粒蛋白前体的水平,其中Nb128,Nb171,Nb184,Nb252等抗体提高颗粒蛋白前体的效果达到或超过对照抗体AL001(图19)。The results showed that the selected nanobodies were able to increase the level of progranulin in the culture medium of U251 cells, among which antibodies such as Nb128, Nb171, Nb184, and Nb252 achieved or exceeded the effect of the control antibody AL001 in increasing progranulin ( FIG. 19 ).
为了进一步测定抗体浓度与U251细胞颗粒蛋白前体分泌水平之间的关系,用不同浓度梯度的分拣蛋白1纳米抗体VHH-Fc分别处理U251细胞,处理72小时后ELISA测定细胞培养基中的颗粒蛋白前体浓度水平,并通过与未加抗体的U251细胞培养基中颗粒蛋白前体浓度比较计算抗体的效果。结果显示,在0.004ug/mL-4.0ug/mL的测试范围内,Nb171和Nb184诱导颗粒蛋白前体升高的效果与抗体浓度大致呈正相关,高浓度抗体诱导颗粒蛋白前体升高更为明显。值得一提的是,在相同抗体浓度下,Nb171和Nb184诱导颗粒蛋白前体升高的效果均优于AL001(图20)。In order to further determine the relationship between antibody concentration and the secretion level of progranulin in U251 cells, U251 cells were treated with different concentration gradients of sortilin 1 nanoantibody VHH-Fc, and the concentration level of progranulin in the cell culture medium was determined by ELISA after 72 hours of treatment, and the effect of the antibody was calculated by comparing the concentration of progranulin in the culture medium of U251 cells without antibody. The results showed that within the test range of 0.004ug/mL-4.0ug/mL, the effect of Nb171 and Nb184 in inducing the increase of progranulin was roughly positively correlated with the antibody concentration, and the increase of progranulin induced by high concentration antibodies was more obvious. It is worth mentioning that at the same antibody concentration, the effects of Nb171 and Nb184 in inducing the increase of progranulin were better than AL001 (Figure 20).
实施例10体内实验Example 10 In vivo experiment
为了进一步验证抗分拣蛋白1纳米抗体在体内的作用,我们构建了针对Sort1蛋白的人源化小鼠,具体而言,我们通过基因克隆和同源重组的方法,将野生型C57B6小鼠Sort1基因中的2号外显子替换成人Sort1蛋白的编码基因,从而实现了在小鼠Sort1基因的原位表达人源的Sort1蛋白,子代小鼠经过基因型鉴定,选择只表达人Sort1基因的纯合子个体进行体内实验(图21)。To further verify the in vivo effects of anti-sortilin 1 nanoantibodies, we constructed humanized mice targeting the Sort1 protein. Specifically, we replaced exon 2 in the Sort1 gene of wild-type C57B6 mice with the gene encoding the human Sort1 protein through gene cloning and homologous recombination, thereby achieving the in situ expression of the human Sort1 protein in the mouse Sort1 gene. The offspring mice were genotyped and homozygous individuals expressing only the human Sort1 gene were selected for in vivo experiments (Figure 21).
将纯化的纳米抗体-Fc融合蛋白以100mg/kg的剂量,分别在第1天和第7天,通过静脉注射进入Sort1人源化小鼠的体内,并在给药前给药后的多个时间点,采用小鼠的外周血,分离血清后用小鼠颗粒蛋白前体ELISA KIT(R&D systems Cat#MPGRN0)测定血清中颗粒蛋白前体的浓度。The purified nanobody-Fc fusion protein was injected intravenously into Sort1 humanized mice at a dose of 100 mg/kg on day 1 and day 7, respectively. The peripheral blood of the mice was collected at multiple time points before and after administration, and the serum was separated and the concentration of progranulin in the serum was measured using mouse progranulin ELISA KIT (R&D systems Cat#MPGRN0).
结果显示,静脉注射抗分拣蛋白1纳米抗体后,小鼠血清中颗粒蛋白前体的水平显著提高,甚至在抗体注射11天后,血清中颗粒蛋白前体的水平仍然是给药前水平的3倍以上。说明我们的纳米抗体在体内可以通过阻止分拣蛋白1介导的颗粒蛋白前体内吞和降解,显著增加功能性颗粒蛋白前体的水平。结果见图22。The results showed that after intravenous injection of anti-sortilin 1 nanobody, the level of progranulin in mouse serum increased significantly. Even 11 days after antibody injection, the level of progranulin in serum was still more than 3 times the level before administration. This shows that our nanobody can significantly increase the level of functional progranulin in vivo by preventing sortilin 1-mediated endocytosis and degradation of progranulin. The results are shown in Figure 22.
实施例11用AAV内源性高表达抗Sort1纳米抗体Example 11 Using AAV to Endogenously Highly Express Anti-Sort1 Nanobodies
我们在专利“一种表达纳米抗体的重组腺相关病毒载体及其应用”(中国专利号2023114805791,CN117210503A)中披露了一种用于重组腺相关病毒表达纳米抗体的质粒载体pssMMAAV-RNY-020。该质粒载体在AAV表达载体的两个反向末端重复序列(ITR)之间依次搭载了CAG启动子、BM40信号肽、纳米抗体序列,以及SV40 poly(A)终止子等表达元件组合,可实现分泌型纳米抗体的最高表达水平。以此为基础,我们构建了高表达抗Sort1纳米抗体的AAV质粒载体,该载体如图23所示。We disclosed a plasmid vector pssMMAAV-RNY-020 for recombinant adeno-associated virus expression of nanoantibodies in the patent "A recombinant adeno-associated virus vector expressing nanoantibodies and its application" (China Patent No. 2023114805791, CN117210503A). This plasmid vector carries a combination of expression elements such as CAG promoter, BM40 signal peptide, nanoantibody sequence, and SV40 poly (A) terminator in sequence between the two inverted terminal repeat sequences (ITR) of the AAV expression vector, which can achieve the highest expression level of secreted nanoantibodies. Based on this, we constructed an AAV plasmid vector that highly expresses anti-Sort1 nanoantibodies, as shown in Figure 23.
AAV病毒包装采用经典的三质粒转染法。包括1)编码野生型AAV9REP-CAP基因的表达质粒pAAV9-Cap-WT;2)编码E4/E2A/VA/L4/L5的辅助质粒pADdeltaF6(Helper plasmid),3)编码带有抗Sort1纳米抗体基因的优化表达载体质粒pscAAV-RNV20-VHH(transfer plasmid),三种质粒等比例混合后,转染在带有10%FBS的DMEM培养基中贴壁培养的HEK-293细胞,72小时后收集细胞培养上清,室温3000g离心10分子以去除细胞碎片,之后用0.22um的过滤器过滤除菌,并经过超滤浓缩、更换缓冲液、亲和层析去除宿主细胞蛋白、阴离子交换层析去除其他痕量杂质和病毒空壳等经典步骤,获得纯化的带有纳米抗体基因的AAV病毒。样品中病毒滴度采用qPCR方法测定,检测所用上游引物为fwd ITR primer:5'-GGAACCCCTAGTGATGGAGTT,检测所用下游引物为rev ITR primer:5'-CGGCCTCAGTGAGCGA。AAV virus packaging adopts the classic three-plasmid transfection method. It includes 1) expression plasmid pAAV9-Cap-WT encoding wild-type AAV9REP-CAP gene; 2) helper plasmid pADdeltaF6 (Helper plasmid) encoding E4/E2A/VA/L4/L5, 3) optimized expression vector plasmid pscAAV-RNV20-VHH (transfer plasmid) encoding anti-Sort1 nanobody gene. The three plasmids were mixed in equal proportions and transfected into HEK-293 cells cultured in DMEM medium with 10% FBS. After 72 hours, the cell culture supernatant was collected and centrifuged at 3000g for 10 seconds at room temperature to remove cell debris. After that, it was filtered and sterilized with a 0.22um filter, and then ultrafiltration concentration, buffer replacement, affinity chromatography to remove host cell proteins, anion exchange chromatography to remove other trace impurities and virus empty shells and other classic steps were performed to obtain purified AAV virus with nanobody gene. The virus titer in the samples was determined by qPCR method. The upstream primer used for detection was fwd ITR primer: 5'-GGAACCCCTAGTGATGGAGTT, and the downstream primer used for detection was rev ITR primer: 5'-CGGCCTCAGTGAGCGA.
为了评估AAV内源性表达抗Sort1纳米抗体的生理功能,我们选择了6周龄的Sort1人源化小鼠,用于给药和分析。在实验的第0天,我们采用尾静脉单次给药的方式注射携带编码纳米抗体的AAV9病毒,每只小鼠接受的病毒用量为1E12 vg。我们在给药前后不同时间点采集血样,测定小鼠血清中Progranulin蛋白的水平。实验在给药后的第45天结束,当天结束实验后处死小鼠并收集脑脊液进行检测。To evaluate the physiological function of anti-Sort1 nanobodies endogenously expressed by AAV, we selected 6-week-old Sort1 humanized mice for administration and analysis. On day 0 of the experiment, we injected AAV9 virus carrying the encoded nanobodies by a single tail vein administration, and each mouse received 1E12 vg of virus. We collected blood samples at different time points before and after administration to measure the level of Progranulin protein in mouse serum. The experiment ended on the 45th day after administration. At the end of the experiment on the same day, the mice were killed and cerebrospinal fluid was collected for testing.
作为对照,我们选择了同样的小鼠进行实验,在实验的第0天和第7天分别两次注射100mg/kg的抗Sort1单克隆抗体AL001。我们按照与AAV给药组相同的时间方案采集血样和脑脊液,用于测定该对照组小鼠血清和脑脊液中Progranulin的水平。As a control, we selected the same mice for the experiment and injected them with 100 mg/kg of anti-Sort1 monoclonal antibody AL001 twice on day 0 and day 7 of the experiment. We collected blood samples and cerebrospinal fluid at the same time schedule as the AAV administration group to measure the level of Progranulin in the serum and cerebrospinal fluid of the control group mice.
血清中Progranulin检测的结果如图24所示。尾静脉单次注射编码抗体Sort1纳米抗体的AAV9,可以显著提高小鼠血清的Progranulin水平一倍以上,这种提高在给药后的第2天开始出现,并且一直维持到整个实验结束,说明AAV表达纳米抗体具有长期的有效性。作为对照,注射抗Sort1单克隆抗体AL001只能暂时提高小鼠血清中的Progranulin水平,这种提高在给药后2天达到最高,随后便出现下降,只有通过再次给药才能维持效果,而在最后一次给药的14天后,血清中的Progranulin会降低到给药前的水平。The results of the Progranulin detection in serum are shown in Figure 24. A single injection of AAV9 encoding the Sort1 nanobody into the tail vein can significantly increase the Progranulin level in the mouse serum by more than one fold. This increase began to appear on the second day after administration and was maintained until the end of the experiment, indicating that the AAV-expressed nanobody has long-term effectiveness. As a control, the injection of the anti-Sort1 monoclonal antibody AL001 can only temporarily increase the Progranulin level in the mouse serum. This increase reached the highest level 2 days after administration, and then decreased. The effect can only be maintained by re-administration. 14 days after the last administration, the Progranulin in the serum will drop to the level before administration.
脑脊液中的Progranulin水平是治疗FTD等中枢神经系统疾病重要的药效标志物,我们在给药45天之后,处死小鼠并测定小鼠脑脊液中Progranulin水平,检测结果如图25所示。可以看到,给药45天后,通过注射内源性表达抗Sort1纳米抗体的AAV,小鼠脑脊液中Progranulin的水平比注射AL001单克隆抗体的对照组高2.5-5倍,说明AAV9表达纳米抗体在一定程度上进入脑组织并发挥了治疗作用,这种脑脊液Progranulin提高的程度超过Alector等公司公布的AL001长期反复给药的效果,说明AAV内源性表达抗Sort1纳米抗体对FTD等神经退行性疾病具有更好的治疗潜力。The level of Progranulin in the cerebrospinal fluid is an important pharmacodynamic marker for the treatment of central nervous system diseases such as FTD. After 45 days of administration, we killed the mice and measured the level of Progranulin in the cerebrospinal fluid of the mice. The test results are shown in Figure 25. It can be seen that after 45 days of administration, the level of Progranulin in the cerebrospinal fluid of mice injected with AAV endogenously expressing anti-Sort1 nanoantibodies was 2.5-5 times higher than that of the control group injected with AL001 monoclonal antibodies, indicating that the AAV9-expressed nanoantibodies entered the brain tissue to a certain extent and played a therapeutic role. The degree of increase in cerebrospinal fluid Progranulin exceeded the effect of long-term repeated administration of AL001 published by Alector and other companies, indicating that AAV endogenously expressing anti-Sort1 nanoantibodies has better therapeutic potential for neurodegenerative diseases such as FTD.
显然,上述实施例仅仅是为清楚地说明所作的举例,并非对实施方式的限定。对于所属领域的普通技术人员来说,在上述说明的基础上还可以做出其它不同形式变化或变动。这里无需也无法对所有的实施方式予以穷举。而由此所引申出的显而易见的变化或变动仍处于本发明创造的保护范围之中。 Obviously, the above embodiments are merely examples for clear explanation and are not intended to limit the implementation methods. For those skilled in the art, other different forms of changes or modifications can be made based on the above description. It is not necessary and impossible to list all the implementation methods here. The obvious changes or modifications derived from these are still within the protection scope of the invention.
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