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WO2025077896A1 - Inhibiteur d'adn polymérase thêta et son utilisation - Google Patents

Inhibiteur d'adn polymérase thêta et son utilisation Download PDF

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Publication number
WO2025077896A1
WO2025077896A1 PCT/CN2024/124519 CN2024124519W WO2025077896A1 WO 2025077896 A1 WO2025077896 A1 WO 2025077896A1 CN 2024124519 W CN2024124519 W CN 2024124519W WO 2025077896 A1 WO2025077896 A1 WO 2025077896A1
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Prior art keywords
alkyl
halogenated
ring
alkoxy
formula
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English (en)
Chinese (zh)
Inventor
谷晓辉
赖焜民
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Shanghai Apeiron Therapeutics Co
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Shanghai Apeiron Therapeutics Co
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Publication of WO2025077896A1 publication Critical patent/WO2025077896A1/fr
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/33Heterocyclic compounds
    • A61K31/395Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins
    • A61K31/40Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil
    • A61K31/407Heterocyclic compounds having nitrogen as a ring hetero atom, e.g. guanethidine or rifamycins having five-membered rings with one nitrogen as the only ring hetero atom, e.g. sulpiride, succinimide, tolmetin, buflomedil condensed with other heterocyclic ring systems, e.g. ketorolac, physostigmine
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04Ortho-condensed systems

Definitions

  • the present invention provides a compound having a structure of formula (I), a pharmaceutically acceptable salt, an isotope isomer, a stereoisomer,
  • R 1 represents -LR L ;
  • L represents a bond or a C 1 -C 6 alkylene group or a halogenated C 1 -C 6 alkylene group, wherein any alkylene group may be replaced by -NR a , -O-, hydroxyl, halogen, -C(O)-, -C(O)O-, -OC(O)-, -NR a C(O)-, -C(O)NR a -, or -S-;
  • RL represents a ring B or ring CY-ring D group
  • Ring D represents C 3 -C 6 cycloalkyl, 3-6 membered heterocyclyl or 5-10 membered heteroaryl, which is optionally substituted by 0, 1, 2 or 3 substituents selected from CN, halogen, -NR a R b , -S(O) 2 R a , C 1 -C 6 alkyl, halogenated C 1 -C 6 alkyl, hydroxy, C 1 -C 6 alkoxy, -COR a , C 1 -C 6 alkylamino;
  • RX1 , RX2 and RX3 each independently represent hydrogen, deuterium, halogen, C1 - C6 alkyl, C2 - C6 alkenyl, C2 - C6 alkynyl, C3 - C6 cycloalkyl, -ORa, oxo, hydroxy( C1 - C6 alkyl), NRaRb , CN , halogenated C1 - C6 alkyl, halogenated C1 - C6 alkoxy, -SO3Ra, -SRa , -SF5 , -C (O) Ra , -C (O)ORa, -OC(O) Ra , -OC( O ) NRaRb , -NRaCORb or -CONRaRb ;
  • X4 represents CH or N
  • X5 represents CH or N
  • X 4 and X 5 each independently represent CH or N.
  • the Cy may be arbitrarily substituted with 0, 1, 2 or 3 substituents selected from the group consisting of deuterated, halogen, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 3 -C 6 cycloalkyl, -OR a , oxo, hydroxy(C 1 -C 6 alkyl), -NR a R b , CN, nitro, halogenated C 1 -C 6 alkyl, halogenated C 1 -C 6 alkoxy, -SO 3 R a , -SR a , -SF 5 , -C(O)R a , -C(O)OR a , -OC(O)R a , -OC(O)NR a R b , -NR a COR b or -CONR a R b ;
  • X1 represents CR X1 or N
  • X2 represents CR X2 or N
  • X3 represents CR X3 or N
  • RX1 , RX2 and RX3 each independently represent hydrogen, deuterium, halogen, C1 - C6 alkyl, C2 - C6 alkenyl, C2 - C6 alkynyl, C3 - C6 cycloalkyl, -ORa, oxo, hydroxy( C1 - C6 alkyl), -NRaRb , CN , nitro, C1 - C6 alkoxy, halogenated C1 - C6 alkyl, halogenated C1 - C6 alkoxy , -SO3Ra , -SRa, -SF5, -C (O) Ra , -C(O) ORa , -OC (O) Ra , -OC (O ) NRaRb , -NRaCORb or -CONRaRb .
  • ring A represents a saturated or unsaturated ring; and the ring A may contain 0, 1, 2, 3, or 4 heteroatoms selected from O, N, S, and Se; further, the ring A may be arbitrarily substituted with 0, 1, 2, or 3 substituents selected from deuterated, halogen, C 1 -C 6 alkyl, C 2 -C 6 alkenyl, C 2 -C 6 alkynyl, C 3 -C 6 cycloalkyl, -OR a , oxo, hydroxyl (C 1 -C 6 alkyl), NR a R b , CN, nitro, halogenated C 1 -C 6 alkyl, halogenated C 1 -C 6 alkoxy, -SO 3 R a , -SR a , -SF 5 , -C(O)R a , -C(O)OR a , -OC(O)R a , -OC(O)NR a R
  • X1 represents CR X1 or N
  • X2 represents CR X2 or N
  • X3 represents CR X3 or N
  • X1 represents CH or N; preferably CH.
  • X 3 represents CH or N; preferably N.
  • L represents -CH 2 - or -CH 2 CH 2 -.
  • reaction solution is concentrated in vacuo to remove trifluoroacetic acid. Dissolve in ethyl acetate and adjust pH to 8 with sodium bicarbonate. Extract with ethyl acetate 3 times, 10 ml each time, and dry over anhydrous sodium sulfate. Combine the organic phases and concentrate in vacuo.
  • Step 3 Dissolve (3aR, 11aS)-6-chloro-10-methyl-1-(7-(trifluoromethyl)thiazolo[5,4-b]pyridin-5-yl)-1,3a,4,5,10,11a-hexahydro-2H-benzo[b]pyrrolo[2,3-f][1,4]diazooctane-2,11(3H)-dione (250 mg, 0.52 mmol) in N,N-dimethylformamide (4 ml), add sodium carbonate (275 mg, 2.59 mmol), tetrabutylammonium bromide (33 mg, 0.10 mmol), 3-bromoprop-1-ene (314 mg, 2.59 mmol).
  • Step 5 2-((3aR, 11aS)-6-chloro-10-methyl-2,11-dioxo-1-(7-(trifluoromethyl)thiazolo[5,4-b]pyridin-5-yl)-1,2,3,3a,4,10,11,11a-octahydro-5H-benzo[b]pyrrolo[2,3-f][1,4]diazoxifen-5-yl)acetaldehyde (80 mg, 0.15 mmol) was dissolved in methanol (2 ml) solution, and molecular sieves (10 mg) and acetic acid (92 mg, 1.53 mmol) were added. The mixture was stirred at room temperature for 30 minutes.
  • Step 3 Dissolve (3aR, 11aS)-6-chloro-10-methyl-1-(4-(trifluoromethyl)thieno[2,3-b]pyridin-6-yl)-1,3a,4,5,10,11a-hexahydro-2H-benzo[b]pyrrolo[2,3-f][1,4]diazooctane-2,11(3H)-dione (0.11 g, 0.23 mmol) in N,N-dimethylformamide solution (2.00 ml), add 3-bromopropylene (1.51 g, 12.58 mmol), sodium carbonate (0.08 g, 0.75 mmol) and tetrabutylammonium bromide (0.01 g, 0.03 mmol), and stir the reaction at 100°C for 2 hours.
  • Step 5 Dissolve 2-((3aR, 11aS)-6-chloro-10-methyl-2,11-dioxo-1-(4-(trifluoromethyl)thieno[2,3-b]pyridin-6-yl)-1,2,3,3a,4,10,11,11a-octahydro-5H-benzo[b]pyrrolo[2,3-f][1,4]diazoxazine-5-yl)acetaldehyde (60 mg, 0.11 mmol) in methanol (2.00 ml), add 1-methylpiperazine (23 mg, 0.23 mmol) and acetic acid (69 mg, 11.49 mmol) and stir at room temperature for 20 minutes, then add sodium cyanoborohydride (29 mg, 0.46 mmol) at 0°C, and then stir at room temperature for 30 minutes.
  • (R)-pyrrolidin-3-ol was used to replace 1-methylpiperazine to give (3aR, 11aS)-5-(2-((R)-3-hydroxypyrrolidin-1-yl)ethyl)-6,10-dimethyl-1-(4-(trifluoromethyl)thieno[2,3-b]pyridin-6-yl)-1,3a,4,5,10,11a-hexahydro-2H-benzo[b]pyrrolo[2,3-f][1,4]diazooctane-2,11(3H)-dione (3.21 mg, 0.18 mmol, 3.00% yield) as a white solid.
  • Example 14 Synthesis of (3aR, 11aS)-6,10-dimethyl-5-(2-(4-methylpiperazin-1-yl)ethyl)-1-(4-(trifluoromethyl)selenophenyl[2,3-b]pyridin-6-yl)-1,3a,4,5,10,11a-hexahydro-2H-benzo[b]pyrrolo[2,3-f][1,4]diazooctane-2,11(3H)-dione
  • Example 15 Synthesis of (3aR, 11aS)-5-((7-acryloyl-5,6,7,8-tetrahydro-[1,2,4]triazolo[4,3-a]pyrazin-3-yl)methyl)-6,10-dimethyl-1-(4-(trifluoromethyl)thieno[2,3-b]pyridin-6-yl)-1,3a,4,5,10,11a-hexahydro-2H-benzo[b]pyrrolo[2,3-f][1,4]diazopyrimidine-2,11(3H)-dione
  • Example 16 Synthesis of (3aR, 11aS)-5-(2-(4-(1-acryloylazine-3-yl)piperazin-1-yl)ethyl)-6,10-dimethyl-1-(7-(trifluoromethyl)thiazolo[5,4-b]pyridin-5-yl)-1,3a,4,5,10,11a-hexahydro 2H-benzo[b]pyrrolo[2,3-f][1,4]diazooctane-2,11(3H)-dione
  • Step 2 3-(4-(2-((3aR, 11aS)-6,10-dimethyl-2,11-dioxo-1-(7-(trifluoromethyl)thiazole Benzyl (5,4-b]pyridin-5-yl)-1,2,3,3a,4,10,11,11a-octahydro-5H-benzo[b]pyrrolo[2,3-f][1,4]diazoxazin-5-yl)ethyl)piperazin-1-yl)azetidine-1-carboxylate (100 mg, 0.13 mmol) was dissolved in hydrochloric acid (2.00 ml) and stirred at 80° C. for 1 hour. The reaction progress was monitored by LCMS.
  • Step 1 Dissolve ((3aR, 11aS)-6-chloro-10-methyl-1-(4-(trifluoromethyl)thieno[2,3-b]pyridin-6-yl)-1,3a,4,5,10,11a-hexahydro-2H-benzo[b]pyrrolo[2,3-f][1,4]diazooctane-2,11(3H)-dione (200 mg, 0.42 mmol) in N-methylpyrrolidone (5.00 ml) and add butyl bromoacetate (812 mg, 4.16 mmol), potassium carbonate (172 mg, 1.25 mmol) and tetrabutylammonium iodide (15.4 mg, 0.04 mmol).
  • Step 2 2-((3aR,11aS)-6-chloro-10-methyl-2,11-dioxo-1-(4-(trifluoromethyl)thieno[2,3-b]pyridin-6-yl)-1,2,3,3a,4,10,11,11a-octahydro-5H-benzo[b]pyrrolo[2,3-f][1,4]diazoxazin-5-yl)acetic acid (80 mg, 0.15 mmol) was dissolved in dichloromethane (2.00 ml) and 1-methylpiperazine (30 mg, 0.30 mmol), 2-(7-azabenzotriazole)-N,N,N',N'-tetramethyluronium hexafluorophosphate (65 mg, 0.17 mmol) and N,N-diisopropylethylamine (55 mg, 0.43 mmol) were added to the solution and stirred at room temperature for 1 hour.
  • Step 1 Dissolve 4-bromo-2,6-dichloro-3-pyridinamine (20.0 g, 82.68 mmol) in 1,4-dioxane (100.0 mL) solution, add oxyphenylmethane isothiocyanate (20.24 g, 124.02 mmol), and stir overnight at 100 ° C.
  • LCMS shows mainly product. The reactants were cooled to room temperature, concentrated, and the residue was recrystallized from dichloromethane and filtered to give N-(7-bromo-5-chloro(1,3-thiazolo[5,4-b]pyridin-2-yl))benzamide (30 g, 98%) as an off-white solid.
  • Step 3 7-bromo-5-chloro-1,3-thiazolo[5,4-b]pyridine-2-amine (20.5 g, 38.75 mmol) was dissolved in tetrahydrofuran (200.00 mL) solution, tert-butyl nitrite (11.3 g, 107.74 mmol) was added, and the mixture was stirred at 70 ° C overnight. LCMS showed that it was mainly product and the raw material was completely consumed.
  • Step 7 Dissolve [(2S,3S)-3-(hydroxymethyl)-5-oxopyrrolidin-2-yl]-N- ⁇ 2-[(tert-butoxy)carbonylamino]-3-chlorophenyl ⁇ -N-methylformamide (10.62 g, 26.64 mmol) in dichloromethane (200 mL), add triethylamine (17.8 g, 175.95 mmol), and then add methanesulfonyl chloride (6.05 g, 52.78 mmol) dropwise at 0°C. mmol). The reaction mixture was stirred at 0 ° C for 1 hour.
  • Step 9 Dissolve 5-chloro-7-(trifluoromethylthio)-1,3-thiazolin-[5,4-b]pyridine (520 mg, 1.54 mmol) in 1,4-dioxane (15.0 mL) solution, add tert-butyl (11aS, 3aR)-6-chloro-10-methyl-2,11-dioxo-4H, 11aH, 3aH-benzo [b] pyrrolo [2.3-f] 1,3-f] 1,4-diaminomole), potassium carbonate (636 mg, 4.61 mmol), 4,5-bis (diphenylphosphine) -9,9-dimethylxanthene (177.85 mg, 0.31 mmol), tris (dibenzylideneacetone) dipalladium (141 mg, 0.15 mmol).
  • Step 11 ((3aR, 11aS)-6-chloro-10-methyl-1-(7-(trifluoromethyl)thio)thiazol[5,4-b]pyridin-5-yl)-1,3a,4,5,10,11-hexahydro-2H-benzo[b]pyrrolo[2,3-f][1,4]diazo-2,11(3H)-dione (60 mg, 0.12 mmol) was dissolved in N,N-dimethylformamide (2.0 mL) solution, and 3-bromo-1-propene (70 mg, 0.58 mmol), sodium carbonate (61 mg, 0.58 mmol), and tetrabutylammonium bromide (3.7 mg, 0.01 mmol) were added.
  • Step 13 Dissolve 2- ⁇ (11aS,3aR)-6-chloro-10-methyl-2,11-dioxo-1-[7-(trifluoromethylthio)(1,3-thiazolino[4,5-e]pyridin-5-yl)]benzo[b]pyrrolidino[2,3-f]1,4-diazolidin-5-yl ⁇ ethanamine (25.0 mg, 0.04 mmol) in methanol (2.0 mL) solution, add 1-methylpiperazine (9.0 mg, 0.09 mmol) and acetic acid (1 drop). Stir the reaction at room temperature for 0.5 hours. Add sodium cyanoborohydride (4.2 mg, 0.07 mmol) and continue stirring for 0.5 hours.
  • Example 22 (3aR, 11aS)-6,10-dimethyl-5-(2-(4-methylpiperazin-1-yl)ethyl)-1-(7-(trifluoromethyl)thio)thiazo[5,4-b]pyridin-5-yl)-1,3a,4,5,11a-hexahydro-2H-benzo[b]pyrrolo[2,3-f][1,4]diazo-2,11(3H)-dione
  • Example 15 A similar method to Example 15 was used to obtain (3aR, 11aS)-6,10-dimethyl-5-(2-(4-methylpiperazin-1-yl)ethyl)-1-(7-(trifluoromethyl)thio)thiazo[5,4-b]pyridin-5-yl)-1,3a,4,5,11a-hexahydro-2H-benzo[b]pyrrolo[2,3-f][1,4]diazo-2,11(3H)-dione (10.05 mg, 35%)
  • the PicoGreen assay was used to determine the ability of compounds to inhibit Pol ⁇ polymerase activity in vitro.
  • the His-TEV-SUMO-tagged Pol ⁇ protein (amino acids 1792-2590) expressed in E. coli was purified and stored in aliquots at -80°C.
  • the assay buffer composition was 25 mM Tris HCI pH 7.5, 12.5 mM NaCI, 0.5 mM MgCI2, 5% glycerol, 0.01% Triton X-100, 0.01% BSA and 1 mM DTT.

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  • Organic Chemistry (AREA)
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  • Pharmaceuticals Containing Other Organic And Inorganic Compounds (AREA)

Abstract

La présente invention concerne un inhibiteur de l'ADN polymérase thêta (Polθ) et une utilisation de clui-ci. Un composé selon la présente invention présente la structure suivante, et a un bon effet d'inhibition sur Polθ.
PCT/CN2024/124519 2023-10-12 2024-10-12 Inhibiteur d'adn polymérase thêta et son utilisation Pending WO2025077896A1 (fr)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
CN202311323093.7 2023-10-12
CN202311323093 2023-10-12
CN202311805564.8 2023-12-25
CN202311805564 2023-12-25

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WO2025077896A1 true WO2025077896A1 (fr) 2025-04-17

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Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2025214463A1 (fr) * 2024-04-13 2025-10-16 正大天晴药业集团股份有限公司 Composé contenant une structure tricyclique fusionnée

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2023067356A1 (fr) * 2021-10-21 2023-04-27 Artios Pharma Limited Composés hétérocycliques destinés à être utilisés dans le traitement du cancer
WO2023067353A1 (fr) * 2021-10-21 2023-04-27 Artios Pharma Limited Composés hétérocycliques à utiliser dans le traitement du cancer

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2023067356A1 (fr) * 2021-10-21 2023-04-27 Artios Pharma Limited Composés hétérocycliques destinés à être utilisés dans le traitement du cancer
WO2023067353A1 (fr) * 2021-10-21 2023-04-27 Artios Pharma Limited Composés hétérocycliques à utiliser dans le traitement du cancer
WO2023067355A1 (fr) * 2021-10-21 2023-04-27 Artios Pharma Limited Composés hétérocycliques destinés à être utilisés dans le traitement du cancer

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2025214463A1 (fr) * 2024-04-13 2025-10-16 正大天晴药业集团股份有限公司 Composé contenant une structure tricyclique fusionnée

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