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WO2025054991A1 - Porin-membrane fusion method, porin insertion buffer solution, and use - Google Patents

Porin-membrane fusion method, porin insertion buffer solution, and use Download PDF

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Publication number
WO2025054991A1
WO2025054991A1 PCT/CN2023/119219 CN2023119219W WO2025054991A1 WO 2025054991 A1 WO2025054991 A1 WO 2025054991A1 CN 2023119219 W CN2023119219 W CN 2023119219W WO 2025054991 A1 WO2025054991 A1 WO 2025054991A1
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Prior art keywords
porin
buffer
membrane
ions
pore
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French (fr)
Chinese (zh)
Inventor
吴蔚
章文蔚
季州翔
黎宇翔
董宇亮
徐讯
曾涛
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BGI Shenzhen Co Ltd
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BGI Shenzhen Co Ltd
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Priority to PCT/CN2023/119219 priority Critical patent/WO2025054991A1/en
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    • CCHEMISTRY; METALLURGY
    • C08ORGANIC MACROMOLECULAR COMPOUNDS; THEIR PREPARATION OR CHEMICAL WORKING-UP; COMPOSITIONS BASED THEREON
    • C08JWORKING-UP; GENERAL PROCESSES OF COMPOUNDING; AFTER-TREATMENT NOT COVERED BY SUBCLASSES C08B, C08C, C08F, C08G or C08H
    • C08J9/00Working-up of macromolecular substances to porous or cellular articles or materials; After-treatment thereof
    • C08J9/36After-treatment
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N27/00Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
    • G01N27/26Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis

Definitions

  • the invention relates to the field of biological analysis and detection, and in particular to a method for fusing a porin with a membrane, a porin pore buffer and an application thereof.
  • a single biological nanopore protein is inserted into the phospholipid membrane.
  • the substance to be tested passes through the nanopore channel under the action of the electric field force, and the substance to be tested is identified by the characteristic current signal generated.
  • the pore protein and the membrane are immersed in the solution environment, and there is a pair of electrodes on both sides of the membrane.
  • the research on biological nanopore detection mainly involves the following aspects: (1) the discovery and modification of different biological pore proteins; (2) the development of detection methods based on nanopore platforms; (3) basic theoretical research on nanopore detection, etc.
  • Different nanopore proteins have different properties such as amino acid composition, structure, charge, etc., and can be used for different types of objects to be detected, and their sensitivity and resolution are also different.
  • the way nanopore proteins fuse with membranes is also slightly different.
  • membrane proteins have a large hydrophobic area on the outer wall, which makes it easier to fuse with the phospholipid bilayer membrane.
  • the hydrophobic area of the outer wall of viral motor channel proteins is small, and liposome vesicles are needed to promote the fusion of proteins with membranes.
  • CN112119033A discloses a method for preparing a phage DNA-packaged motor protein channel into a liposome and fusing it with a polymer to promote the fusion of the pore protein with the membrane.
  • the characteristics or shortcomings of this method are: (1) This method is applicable to non-membrane protein channels; (2) The method of forming liposomes is relatively complicated, and special equipment (such as rotary evaporators, extruders, etc.) is required to prepare liposomes; (3) The prepared liposomes fuse with the polymer membrane while changing the composition of the polymer membrane.
  • This patent describes the initiation of the fusion of nanochannel proteins and polymer membranes by liposomes; if the liposome method is not used, the nanochannel protein and the polymer membrane cannot be directly fused.
  • CN110023753A discloses a method for controlling the insertion of pores into a membrane using voltage.
  • the potential difference of the membrane is controlled to prevent or reduce the insertion of another pore protein to form a porous nanopore channel.
  • the method in the patent describes how to reduce the probability of multiple pore proteins inserting into the membrane, but does not explicitly involve how to increase the yield of pore insertion.
  • Nanopore-based sequencing chips contain a large number of arrays of sensor units, such as For example, arrays ranging from a few thousand to a million cells. Each cell of the array contains membranes and porins.
  • One of the challenges is to increase the yield of arrays with membranes and porins. The higher the yield, the higher the sequencing throughput. Therefore, it is necessary to increase the yield of porin plugs.
  • the main purpose of the present invention is to provide a method for fusing porin with a membrane, a porin plug buffer and an application thereof, so as to solve the problem of low efficiency of fusing porin with a membrane in the prior art.
  • a method for fusing porins with membranes comprises: distributing a first solution on a first side of the membrane and distributing a second solution on a second side of the membrane; applying voltage on both sides of the membrane to fuse the porins with the membrane, and detecting the current in the solution; when the current increases, it indicates that the porins are inserted into the membrane, and the voltage is adjusted to 0V, and the fusion of the porins with the membrane is completed; the first solution comprises a first buffer solution containing porins, and the second solution comprises a second buffer solution not containing porins; the osmotic pressure of the first solution is greater than the osmotic pressure of the second solution.
  • the osmotic pressure of the first solution and the osmotic pressure of the second solution differ by at least 50 mOsm/kg, preferably by at least 200 mOsm/kg.
  • first buffer and/or the second buffer contain monovalent metal ions and/or divalent metal ions; preferably, the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions, and the divalent metal ions include calcium ions and/or magnesium ions.
  • the concentration of the monovalent metal ions is 350 to 800 mM, and the concentration of the divalent metal ions is 250 to 550 mM.
  • the concentration of potassium ions includes 350-500 mM
  • the concentration of sodium ions includes 470-550 mM
  • the concentration of magnesium ions includes 250-550 mM
  • the membrane includes a diblock phospholipid membrane, a diblock high molecular polymer membrane, a triblock phospholipid membrane, or a triblock high molecular polymer membrane.
  • the phospholipid membrane includes a membrane composed of one or more of the following: diphytanoyl-phosphatidylcholine, 1,2-diphytanoyl-sn-glycero-3-phosphocholine, 1,2-di-O-phytanoyl-sn-glycero-3-phosphocholine, palmitoyl-oleoyl-phosphatidylcholine, dioleoyl-phosphatidyl-methyl ester, dipalmitoylphosphatidylcholine, phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidic acid, phosphatidyl Inositol, phosphatidylglycerol, sphingomyelin, 1,2-di-O-phytanoyl-sn-glycerol, 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(
  • the high molecular polymer film includes any one or more of the following: copolymers of one or more of polysiloxane, polyolefin, perfluoropolyether, perfluoroalkyl polyether, polystyrene, polyoxypropylene, polyvinyl acetate, polyoxybutylene, polyisoprene, polybutadiene, polyvinyl chloride, polyalkyl acrylate, polyalkyl methacrylate, polyacrylonitrile, polypropylene, PTHF, polymethacrylate, polyacrylate, polysulfone, polyethylene ether, poly(propylene oxide), C1-C6 alkyl acrylate and methacrylate, acrylamide, methacrylamide, (C1-C6 alkyl) acrylamide and methacrylamide, N,N-dialkyl-acrylamide, ethoxy acrylate and methacrylate, polyethylene glycol monomethacrylate and polyethylene glycol monomethyl ether meth
  • the porin protein includes one or more proteins having at least 70% homology to the following proteins: bacterial amyloid secretion channel CsgG, Mycobacterium smegmatis porin, ⁇ -hemolysin, OmpG, InvG, GspD, Frac, PA63, SP1, Aerobacterial lysin, plyAB, bacteriophage motor protein channel phi29, T3, T4, T7, SPP1 or gp20c.
  • proteins having at least 70% homology to the following proteins: bacterial amyloid secretion channel CsgG, Mycobacterium smegmatis porin, ⁇ -hemolysin, OmpG, InvG, GspD, Frac, PA63, SP1, Aerobacterial lysin, plyAB, bacteriophage motor protein channel phi29, T3, T4, T7, SPP1 or gp20c.
  • the fusion method also includes: adjusting the voltage to 0V and incubating for 5-15 minutes, preferably 10 minutes; preferably, after incubation, using a second buffer solution that does not contain porins to replace the first buffer solution containing porins, and applying voltage to both sides of the membrane, detecting the current and counting whether a single porin is fused with the membrane.
  • a porin pore buffer is provided, wherein the porin pore buffer contains monovalent metal ions and/or divalent metal ions.
  • the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions
  • the divalent metal ions include calcium ions and/or magnesium ions.
  • the concentration of the monovalent metal ions is 350 to 800 mM, and the concentration of the divalent metal ions is 250 to 550 mM.
  • the concentration of potassium ions includes 350-500mM
  • the concentration of sodium ions includes 470-550mM
  • the concentration of magnesium ions includes 250-550mM
  • a porin pore buffer combination comprises two porin pore buffers, and the osmotic pressure difference between the two porin pore buffers is greater than or equal to 50mOsm/kg.
  • the porin pore buffer contains monovalent metal ions and/or divalent metal ions; preferably, the concentration of the monovalent metal ions is 350-800 mM, and the concentration of the divalent metal ions is 250-550 mM.
  • the concentration of potassium ions includes 350-500 mM
  • the concentration of sodium ions includes 470-550 mM
  • the concentration of magnesium ions includes 250-550 mM
  • the osmotic pressure difference between the two porin plug buffers is greater than or equal to 200 mOsm/kg.
  • a fusion method, or the above-mentioned porin pore buffer, or the above-mentioned porin pore buffer combination is provided for use in the preparation of a nanopore protein sequencing unit.
  • the fusion of the porin to the membrane can be achieved by a simple buffer and applied voltage, and the porin can be embedded in the membrane.
  • the porin can be embedded without the assistance of additional components such as liposomes, and the operation is simple, the fusion efficiency is high, and the single-hole ratio (single-hole rate) of the embedded hole is high, which can significantly improve the yield of the sequencing unit for nanoporin sequencing.
  • Figure 1 shows a schematic diagram of a chip array device according to Example 1 of the present invention, wherein 1 is a ground electrode; 2 is a fluid reservoir of a single sequencing unit; 3 is a membrane; 4 is a buffer solution during the fluid storage period, located on the second side of the membrane; 5 is a working electrode; 6 is a chip pool shared by different sequencing units, located on the first side of the membrane.
  • FIG. 2 shows a graph of the opening current of a single CsgG pore embedded in a phospholipid membrane in a buffer according to Example 1 of the present invention.
  • FIG. 3 shows a graph showing the results of the number of embedded holes/number of membranes formed in different buffer systems according to an embodiment of the present invention.
  • FIG. 4 shows a graph showing the single-well ratio (number of single-wells/total number of wells) under different buffer systems according to an embodiment of the present invention.
  • FIG. 5 shows a result diagram of the number of single holes/number of membranes formed by embedding holes in different buffer systems according to an embodiment of the present invention.
  • FIG. 6 shows a comparison result of capacitance values under different buffer systems according to Example 2 of the present invention.
  • Example 7 shows the result graphs of the single pore ratio (single pore number/total pore number) of embedded pores and the single pore number of embedded pores/film formation number at different potassium chloride concentrations according to Example 5 of the present invention.
  • Example 8 shows the result graphs of the single pore ratio (single pore number/total pore number) of embedded holes and the single pore number of embedded holes/film formation number under different sodium chloride concentrations according to Example 5 of the present invention.
  • the methods for fusing porins with membranes in the prior art are complex and have low fusion efficiency, which affects the throughput of subsequent high-throughput sequencing.
  • the inventors attempt to develop a new method for fusing porins with membranes, and thus propose a series of protection schemes of this application.
  • a method for fusing porins with membranes comprises: distributing a first solution on a first side of the membrane and distributing a second solution on a second side of the membrane; applying voltage on both sides of the membrane to fuse the porins with the membrane, and detecting the current in the solution; when the current increases, it indicates that the porins are inserted into the membrane, and the voltage is adjusted to 0 V, and the fusion of the porins with the membrane is completed; the first solution comprises a first buffer solution containing porins, and the second solution comprises a second buffer solution not containing porins; the osmotic pressure of the first solution is greater than the osmotic pressure of the second solution.
  • the membrane separates the first solution and the second solution, and by applying voltage to both sides of the membrane, namely the first solution and the second solution, the porin is promoted to be inserted into the membrane from the first solution, thereby realizing the fusion of the porin and the membrane.
  • the above first solution and the second solution are both buffers containing monovalent metal ions and/or divalent metal ions.
  • the osmotic pressure of the first solution is greater than the osmotic pressure of the second solution.
  • This difference in osmotic pressure can promote the porin to be inserted into the membrane from the area with higher osmotic pressure, thereby improving the efficiency of the fusion of the porin and the membrane.
  • the osmotic pressure of the above first solution and the second solution can be derived from the porin or from the difference in the components of the first buffer and the second buffer.
  • the different ionic strengths in different buffers produce a difference in osmotic pressure.
  • the prior art also discloses a method of using osmotic pressure difference to initiate pore and membrane fusion, but in this method, a method of inserting porins from a buffer with a lower osmotic pressure to a buffer with a higher osmotic pressure is disclosed.
  • the insertion direction of the porins in the above fusion method of the present application is opposite to that of the prior art, and the fusion method of the present application has high fusion efficiency and a high proportion of single pores in the embedded pores, which can significantly improve the yield of sequencing units for nanopore protein sequencing.
  • the hole with the current value concentrated in 180pA-250pA is called a single hole
  • the hole with the current concentrated above 250pA is called a multi-hole.
  • first side and second side merely indicate the names of different sides of the membrane, and do not limit the direction, position, etc. of the membrane.
  • the first solution may be located in any direction or position of the membrane, including but not limited to above or below the membrane.
  • the osmotic pressure of the first solution differs from the osmotic pressure of the second solution by at least 50 mOsm/kg, preferably by at least 200 mOsm/kg.
  • the above osmotic pressure difference includes but is not limited to 50, 60, 70, 80, 90, 100, 120, 140, 160, 180, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290, 300, 350, 400, 450 or 500 mOsm/kg.
  • the first buffer and/or the second buffer contain monovalent metal ions and/or divalent metal ions; preferably, the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions, and the divalent metal ions include calcium ions and/or magnesium ions.
  • the monovalent metal ions and/or divalent metal ions in the buffer can promote the fusion efficiency of the porin and the membrane, increase the single-hole ratio of the embedded holes, and the embedding process can be completed without the assistance of additional components such as liposomes.
  • the concentration of monovalent metal ions includes 350-800 mM
  • the concentration of divalent metal ions includes 250-550 mM.
  • the above monovalent metal ion concentration includes but is not limited to 350, 400, 450, 470, 500, 550, 600, 650, 700, 750 or 800 mM
  • the above divalent metal ion concentration includes but is not limited to 250, 300, 350, 400, 450, 500 or 550 mM.
  • the concentration of potassium ions includes 350-500 mM
  • the concentration of sodium ions includes 470-550 mM
  • the concentration of magnesium ions includes 250-550 mM
  • the above-mentioned potassium ion concentration includes but is not limited to 350, 370, 400, 420, 450, 470 or 500 mM
  • the sodium ion concentration includes but is not limited to 470, 480, 490, 500, 510, 520, 530, 540 or 550 mM
  • the magnesium ion concentration includes but is not limited to 250, 300, 350, 400, 450, 500 or 550 mM.
  • the inventors unexpectedly discovered that the use of the above-mentioned buffer for the fusion of pore proteins and membranes can improve the embedding rate, single pore ratio (number of single pores/total number of pores), number of single pores/number of membranes, and other data. Compared with other embedding buffers used in the prior art, it has better fusion efficiency and can significantly improve the yield of sequencing units used for nanopore protein sequencing.
  • the membrane comprises a diblock phospholipid membrane, a diblock polymer membrane, a triblock phospholipid membrane, or a triblock polymer membrane.
  • the phospholipid membrane comprises a membrane composed of one or more of the following: diphytanoyl-phosphatidylcholine, 1,2-diphytanoyl-sn-glycero-3-phosphocholine, 1,2-di-O-phytanoyl-sn-glycero-3-phosphocholine, palmitoyl-oleoyl-phosphatidylcholine, dioleoyl-phosphatidyl-methyl ester, dipalmitoylphosphatidylcholine, phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidic acid, phosphatidylinositol, phosphatidylglycerol, sphingomyelin, 1,2-di-O-phytanoyl-sn-glycerol, 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[
  • the high molecular polymer film includes any one or more of the following: copolymers of one or more of polysiloxane, polyolefin, perfluoropolyether, perfluoroalkyl polyether, polystyrene, polyoxypropylene, polyvinyl acetate, polyoxybutylene, polyisoprene, polybutadiene, polyvinyl chloride, polyalkyl acrylate, polyalkyl methacrylate, polyacrylonitrile, polypropylene, PTHF, polymethacrylate, polyacrylate, polysulfone, polyethylene ether, poly(propylene oxide), C1-C6 alkyl acrylate and methacrylate, acrylamide, methacrylamide, (C1-C6 alkyl) acrylamide and methacrylamide, N,N-dialkyl-acrylamide, ethoxy acrylate and methacrylate, polyethylene glycol monomethacrylate and polyethylene glycol monomethyl
  • the porin protein comprises one or more proteins having at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5%, 99.7%, 99.8% or 99.9% homology to the bacterial amyloid secretion channel CsgG, Mycobacterium smegmatis porin, ⁇ -hemolysin, OmpG, InvG, GspD, Frac, PA63, SP1, Aerobacterial lysin, plyAB, bacteriophage motor protein channel phi29, T3, T4, T7, SPP1 or gp20c.
  • the fusion method further comprises: adjusting the voltage to 0 V and incubating for 5-15 minutes, preferably 10 minutes; preferably, after incubation, replacing the first buffer containing the porin with a second buffer not containing the porin, A voltage is applied to both sides of the membrane, the current is detected and the number of pores fused to the membrane is counted.
  • the voltage is adjusted to 0V to prevent more porins from continuing to be inserted into the membrane and affecting the performance of the product. Incubating for a period of time under the condition of voltage 0V can improve the stability of the obtained product, i.e., the sequencing unit. After incubation for a period of time, the buffer containing porin is replaced with a buffer containing no porin, and voltage is applied to prevent more porins from continuing to fuse with the membrane, and the number of porins inserted into the membrane is determined by detecting the current.
  • the pores with current values concentrated between 180pA-250pA are called single pores, which means that one porin is fused on the membrane; the pores with current values concentrated above 250pA are called multi-pores, which means that multiple porins are fused on the membrane.
  • a porin pore buffer is provided, wherein the porin pore buffer contains monovalent metal ions and/or divalent metal ions.
  • the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions
  • the divalent metal ions include calcium ions and/or magnesium ions.
  • the concentration of monovalent metal ions is 350-800 mM, and the concentration of divalent metal ions is 250-550 mM.
  • the concentration of potassium ions includes 350-500 mM
  • the concentration of sodium ions includes 470-550 mM
  • the concentration of magnesium ions includes 250-550 mM
  • a porin pore buffer combination comprising two porin pore buffers, and the osmotic pressure difference between the two porin pore buffers is greater than or equal to 50 mOsm/kg.
  • the concentration of potassium ions includes 350-500 mM
  • the concentration of sodium ions includes 470-550 mM
  • the concentration of magnesium ions includes 250-550 mM
  • the osmotic pressure difference between the two porin plug buffers is greater than or equal to 200 mOsm/kg.
  • Embodiment 1 is a diagrammatic representation of Embodiment 1:
  • the porin used in this example is a CsgG mutant (the wild-type amino acid sequence is shown by SEQ ID NO: 1, and the mutation site is: Y51A/F56Q/R97W/R192D).
  • the porin was thoroughly mixed in 300 ⁇ L buffer 1 and pushed into the upper side of the membrane in the chip array device (position 6 in Figure 1).
  • the structure of the chip array device is shown in Figure 1, wherein 1 is a ground electrode; 2 is a fluid reservoir for a single sequencing unit; 3 is a membrane; 4 is a buffer for the fluid storage period, located on the second side of the membrane (the side below the membrane); 5 is a working electrode; 6 is a chip pool shared by different sequencing units, located on the first side of the membrane (the side above the membrane).
  • the device used in the above fusion method includes but is not limited to the device shown in Figure 1.
  • the hole state of different channels is counted at 0.18V, and the number of holes in each channel is determined according to the current value.
  • Channels with current values of 0-20pA are considered to be un-hole-embedded, holes with current values concentrated between 180pA-250pA are called single holes (as shown in Figure 2), and holes with currents concentrated above 250pA are called multi-holes.
  • amino acid sequence of the wild-type CsgG transmembrane protein is represented by SEQ ID NO: 1:
  • the membrane containing multiple nanopore channels cannot be used for subsequent single-molecule detection experiments.
  • the array has a yield of membranes and single pores. The higher the yield, the higher the sequencing throughput. Therefore, improving the yield of pore protein plugs is of great significance for improving sequencing throughput.
  • the membrane area is large.
  • the porin will actively embed, the difficulty of embedding is reduced, and the probability of porous channels is greatly increased.
  • the embedding method needs to be further optimized. By changing the osmotic pressure on both sides of the membrane to form different osmotic pressure differences, the membrane area can be effectively changed, thereby changing the difficulty of embedding.
  • Examples 2 to 4 the single-pore embedding effects of a series of embedding buffers with similar osmotic pressures but containing different monovalent or divalent metal cations are demonstrated, and finally a plurality of non-isotonic embedding buffers that can effectively improve the single-pore rate are screened out.
  • Embodiment 2 is a diagrammatic representation of Embodiment 1:
  • This embodiment shows the experiment of the pore optimization group, which shows that changing the buffer used for the pore on one side of the membrane can significantly improve the single-pore yield.
  • the same CsgG porin mutant as in Example 1 was used in this example.
  • the lower side of the membrane is buffer 1, and the osmotic pressure of buffer 2 containing porin is greater than the osmotic pressure of buffer 1, and the osmotic pressure difference is 230 mOsm/kg.
  • the number of embedded holes/number of membranes can reach 82% ⁇ 5% (as shown in Figure 3), and the single hole/total hole is also greatly improved, reaching 92% ⁇ 3%, which is 31% higher than the result of buffer 1 (as shown in Figure 4).
  • the number of single holes/number of membranes is also greatly improved, which is 43% higher than the result of embedding in buffer 1, reaching 77% ⁇ 8% (as shown in Figure 5).
  • buffer 2 can effectively reduce capacitance (as shown in Figure 6). When capacitance is low, noise is generally low. Under the experimental conditions of buffer 1, the peak capacitance is around 115pF; under the experimental conditions of buffer 2, the peak capacitance is effectively reduced to around 75pF.
  • Example 2 the same CsgG porin mutant as in Example 1 was used.
  • 3 mL of sodium chloride buffer was added.
  • the lower side of the membrane is buffer 1.
  • the osmotic pressure of buffer 3 containing porin is greater than the osmotic pressure of buffer 1, and the osmotic pressure difference is 250mOsm/kg.
  • the pore state of different channels is counted at 0.18V.
  • the number of pores in each channel is determined by the current value.
  • Channels with current values of 0-20pA are considered to be un-embedded, and pores with current values concentrated between 180pA and 250pA are called single pores, and pores with currents concentrated above 250pA are called multi-pores.
  • the number of embedded holes/number of membranes formed can reach 92% ⁇ 1% (as shown in Figure 3), and the single hole/total hole ratio is improved compared with the embedding result of buffer 1, reaching 85% ⁇ 4%, an increase of 20% (as shown in Figure 4); the number of single holes/number of membranes formed is the same as the embedding result of buffer 2, reaching 78% ⁇ 4%, which is 44% higher than the single hole rate of the embedding in buffer 1 (as shown in Figure 5).
  • Embodiment 4 is a diagrammatic representation of Embodiment 4:
  • This example shows the experiment of the embedding optimization group, which shows that other valence metal ions besides potassium and sodium, such as the divalent metal ion magnesium, can also significantly improve the embedding yield and results.
  • Example 2 The same CsgG porin mutant as in Example 1 was used in this example.
  • the lower side of the membrane was buffer 1, and the osmotic pressure of buffer 4 containing porin was greater than the osmotic pressure of buffer 1, and the osmotic pressure difference was 260 mOsm/kg.
  • the number of pores in each channel is determined according to the current value.
  • Channels with current values of 0-20pA are considered to be un-embedded, and pores with current values concentrated between 180pA and 250pA are called single pores, and pores with currents concentrated above 250pA are called multi-pores.
  • the number of embedded holes/film formation can reach 82% ⁇ 6% (as shown in Figure 3), and the single hole/total hole result is improved compared with the embedding result of buffer 1.
  • the single hole number/film formation number is the same as the results of buffer 2 and buffer 3, reaching 78% ⁇ 8%, which is 44% higher than the single hole rate of buffer 1 (as shown in Figure 5).
  • the ratio of single pore number to total pore number is best in 0.47M potassium chloride buffer and 0.5M potassium chloride buffer, but the ratio of single pore number to membrane number is poor in 0.5M potassium chloride buffer.
  • the best potassium chloride concentration range in potassium chloride buffer is selected between 0.35M and 0.5M, among which 0.47M performs best.
  • sodium chloride buffer 0.47M-0.55M sodium chloride buffer was tested based on potassium chloride buffer. As shown in FIG8 , sodium chloride buffers above 0.5M performed better than isotonic buffer 1 (single pore/total pores: 0.70 ⁇ 0.15; single pore/number of membranes formed: 0.54 ⁇ 0.09).
  • the above embodiments of the present invention achieve the following technical effects: using the above-mentioned method for fusing the porin with the membrane, the fusion of the porin with the membrane can be achieved by a simple buffer and applied voltage, and the porin embedded in the membrane can be completed.
  • the porin embedded can be achieved without the assistance of additional components such as liposomes, the operation is simple, the fusion efficiency is high, and the single hole ratio of the embedded hole is high, which can significantly improve the yield of the sequencing unit for nanoporin sequencing.
  • the sequencing unit obtained by the fusion of the porin with the membrane using the above-mentioned buffer has a lower capacitance than the sequencing unit of the prior art, and thus has lower noise when sequencing, which is conducive to improving the performance of subsequent high-throughput sequencing.

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Abstract

Provided in the present invention are a porin-membrane fusion method, a porin insertion buffer solution and the use. Said fusion method comprises: providing a first solution at a first side of a membrane and providing a second solution at a second side of the membrane; applying a voltage to both sides of the membrane to perform porin-membrane fusion; measuring a current in the solution; and when the current increases which indicates a porin has been inserted into the membrane, then adjusting the voltage to 0 V, thereby completing the porin-membrane fusion. The first solution comprises a first buffer solution containing the porin, and the second solution comprises a second buffer solution which does not contain the porin, the osmotic pressure of the first solution being greater than the osmotic pressure of the second solution. The present invention can resolve the issue of the single-pore ratio during porin-membrane fusion in the prior art, and is suitable for the field of biological analysis and detection.

Description

孔蛋白与膜的融合方法、孔蛋白插孔缓冲液及应用Porin and membrane fusion method, porin plug buffer and application 技术领域Technical Field

本发明涉及生物分析检测领域,具体而言,涉及一种孔蛋白与膜的融合方法、孔蛋白插孔缓冲液及应用。The invention relates to the field of biological analysis and detection, and in particular to a method for fusing a porin with a membrane, a porin pore buffer and an application thereof.

背景技术Background Art

1996年,科学家首次利用alpha-hemolysin蛋白实现了不同碱基的识别(Kasianowicz,John J.,et al.Proceedings of the National Academy of Sciences 93.24(1996):13770-13773.),揭示了利用生物纳米孔传感器进行DNA测序的潜力。随着该领域纳米技术的飞速发展,纳米孔检测技术已经逐步应用于核酸、蛋白、聚合物等多种大分子检测。In 1996, scientists first used alpha-hemolysin protein to achieve recognition of different bases (Kasianowicz, John J., et al. Proceedings of the National Academy of Sciences 93.24 (1996): 13770-13773.), revealing the potential of using biological nanopore sensors for DNA sequencing. With the rapid development of nanotechnology in this field, nanopore detection technology has been gradually applied to the detection of a variety of macromolecules such as nucleic acids, proteins, and polymers.

生物纳米孔检测原理:单个生物纳米孔蛋白插入磷脂膜,待测物在电场力作用下穿过纳米孔通道,通过产生的特征电流信号来识别待测物质。孔蛋白和膜浸润在溶液的环境中,且膜两侧分别含有一对电极。Principle of biological nanopore detection: A single biological nanopore protein is inserted into the phospholipid membrane. The substance to be tested passes through the nanopore channel under the action of the electric field force, and the substance to be tested is identified by the characteristic current signal generated. The pore protein and the membrane are immersed in the solution environment, and there is a pair of electrodes on both sides of the membrane.

生物纳米孔检测的研究主要涉及以下几方面:(1)不同生物孔蛋白的发掘及其改造;(2)基于纳米孔平台检测方法的开发;(3)纳米孔检测基础理论研究等。不同纳米孔蛋白,由于其氨基酸组成、结构、电荷等性质不同,能够用于待检测物的种类、灵敏度、分辨率也表现不同。纳米孔蛋白与膜融合方式也略有不同。例如:膜蛋白在外壁含有疏水区域较大,与磷脂双分子层膜融合较易。病毒马达通道蛋白外壁疏水区域较小,需要利用脂质体囊泡介导的方式促进蛋白与膜融合。The research on biological nanopore detection mainly involves the following aspects: (1) the discovery and modification of different biological pore proteins; (2) the development of detection methods based on nanopore platforms; (3) basic theoretical research on nanopore detection, etc. Different nanopore proteins have different properties such as amino acid composition, structure, charge, etc., and can be used for different types of objects to be detected, and their sensitivity and resolution are also different. The way nanopore proteins fuse with membranes is also slightly different. For example: membrane proteins have a large hydrophobic area on the outer wall, which makes it easier to fuse with the phospholipid bilayer membrane. The hydrophobic area of the outer wall of viral motor channel proteins is small, and liposome vesicles are needed to promote the fusion of proteins with membranes.

CN112119033A公开了一种将噬菌体DNA包装马达蛋白通道制备成脂质体与聚合物融合的方法,促进孔蛋白与膜融合。该方法特点或不足在于:(1)该方法适用于非膜蛋白通道;(2)形成脂质体的方式较复杂,需要借助专用设备(例如:旋蒸仪、Extruder等)制备脂质体;(3)制备好的脂质体与聚合物膜融合的同时改变了聚合物膜的成分。该专利中描述了通过脂质体的方式启动了纳米通道蛋白与聚合物膜的融合;如果不采用脂质体方式,纳米通道蛋白与聚合物膜无法直接融合。CN112119033A discloses a method for preparing a phage DNA-packaged motor protein channel into a liposome and fusing it with a polymer to promote the fusion of the pore protein with the membrane. The characteristics or shortcomings of this method are: (1) This method is applicable to non-membrane protein channels; (2) The method of forming liposomes is relatively complicated, and special equipment (such as rotary evaporators, extruders, etc.) is required to prepare liposomes; (3) The prepared liposomes fuse with the polymer membrane while changing the composition of the polymer membrane. This patent describes the initiation of the fusion of nanochannel proteins and polymer membranes by liposomes; if the liposome method is not used, the nanochannel protein and the polymer membrane cannot be directly fused.

CN110023753A公开了一种利用电压控制孔插入膜的方法。通过控制膜的电位差防止或减少插入另一个孔蛋白形成多孔纳米孔通道。该专利中方法描述了如何降低多个孔蛋白插入膜的概率,但是并没有明确涉及如何提高插孔产率。CN110023753A discloses a method for controlling the insertion of pores into a membrane using voltage. The potential difference of the membrane is controlled to prevent or reduce the insertion of another pore protein to form a porous nanopore channel. The method in the patent describes how to reduce the probability of multiple pore proteins inserting into the membrane, but does not explicitly involve how to increase the yield of pore insertion.

英国牛津纳米孔公司推出了多款不同通量的纳米孔测序仪。其中,小型测序仪MinION单张芯片含有512个通道(channel),2048个纳米孔通道槽或测序单元(well)。在2048个well中含有超过800个单孔,即为测序芯片合格。单张芯片单孔率越高,意味着可利用的有效纳米孔单孔数量越多或有效测序单元越多,可产生的数据量越大。因此,在单张芯片上提高单孔率对提高测序通量具有重要意义。基于纳米孔的测序芯片含有大量阵列的传感器单元,例 如从几千个到一百万个单元的阵列。阵列的每个单元包含膜和孔蛋白。其中一个挑战是增加阵列中具有膜和孔蛋白的产率,产率越高,测序通量也越高。因此,提高孔蛋白插孔的产率很有必要性。Oxford Nanopore, a British company, has launched a number of nanopore sequencers with different throughputs. Among them, a single chip of the small sequencer MinION contains 512 channels and 2048 nanopore channel slots or sequencing units (wells). If there are more than 800 single holes in the 2048 wells, the sequencing chip is qualified. The higher the single-hole rate of a single chip, the more effective nanopore single holes or effective sequencing units that can be used, and the greater the amount of data that can be generated. Therefore, improving the single-hole rate on a single chip is of great significance to improving sequencing throughput. Nanopore-based sequencing chips contain a large number of arrays of sensor units, such as For example, arrays ranging from a few thousand to a million cells. Each cell of the array contains membranes and porins. One of the challenges is to increase the yield of arrays with membranes and porins. The higher the yield, the higher the sequencing throughput. Therefore, it is necessary to increase the yield of porin plugs.

发明内容Summary of the invention

本发明的主要目的在于提供一种孔蛋白与膜的融合方法、孔蛋白插孔缓冲液及应用,以解决现有技术中的孔蛋白与膜融合效率低的问题。The main purpose of the present invention is to provide a method for fusing porin with a membrane, a porin plug buffer and an application thereof, so as to solve the problem of low efficiency of fusing porin with a membrane in the prior art.

为了实现上述目的,根据本发明的第一个方面,提供了一种孔蛋白与膜的融合方法,该融合方法包括:使膜的第一侧分布有第一溶液,使膜的第二侧分布有第二溶液;在膜的两侧施加电压,进行孔蛋白与膜的融合,检测溶液中的电流;当电流增大时,表示孔蛋白插入膜,调整电压至0V,孔蛋白与膜的融合完成;第一溶液包括含有孔蛋白的第一缓冲液,第二溶液包括不含有孔蛋白的第二缓冲液;第一溶液的渗透压大于第二溶液的渗透压。In order to achieve the above-mentioned purpose, according to the first aspect of the present invention, a method for fusing porins with membranes is provided, and the fusion method comprises: distributing a first solution on a first side of the membrane and distributing a second solution on a second side of the membrane; applying voltage on both sides of the membrane to fuse the porins with the membrane, and detecting the current in the solution; when the current increases, it indicates that the porins are inserted into the membrane, and the voltage is adjusted to 0V, and the fusion of the porins with the membrane is completed; the first solution comprises a first buffer solution containing porins, and the second solution comprises a second buffer solution not containing porins; the osmotic pressure of the first solution is greater than the osmotic pressure of the second solution.

进一步地,第一溶液的渗透压与第二溶液的渗透压至少有50mOsm/kg的差值,优选为至少有200mOsm/kg的差值。Furthermore, the osmotic pressure of the first solution and the osmotic pressure of the second solution differ by at least 50 mOsm/kg, preferably by at least 200 mOsm/kg.

进一步地,第一缓冲液和/或第二缓冲液中含有一价金属离子和/或二价金属离子;优选地,一价金属离子包括钠离子、钾离子或锂离子中的一种或多种,二价金属离子包括钙离子和/或镁离子。Furthermore, the first buffer and/or the second buffer contain monovalent metal ions and/or divalent metal ions; preferably, the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions, and the divalent metal ions include calcium ions and/or magnesium ions.

进一步地,一价金属离子的浓度包括350~800mM,二价金属离子的浓度包括250~550mM。Furthermore, the concentration of the monovalent metal ions is 350 to 800 mM, and the concentration of the divalent metal ions is 250 to 550 mM.

进一步地,钾离子的浓度包括350~500mM,钠离子的浓度包括470~550mM,镁离子的浓度包括250~550mM;优选地,第一缓冲液和/或第二缓冲液包括:350~500mM氯化钾,10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或470~550mM氯化钠,10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或250~550mM氯化镁,10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或100~200mM铁氰化钾,100~200mM亚铁氰化钾,10~50mM磷酸钾;优选地,第一缓冲液包括470mM氯化钾,25mM 4-羟乙基哌嗪乙磺酸,pH=8.0;或550mM氯化钠,25mM 4-羟乙基哌嗪乙磺酸,pH=8.0。Further, the concentration of potassium ions includes 350-500 mM, the concentration of sodium ions includes 470-550 mM, and the concentration of magnesium ions includes 250-550 mM; preferably, the first buffer and/or the second buffer includes: 350-500 mM potassium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=7.0-8.2; or 470-550 mM sodium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=7.0-8. .2; or 250-550mM magnesium chloride, 10-50mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=7.0-8.2; or 100-200mM potassium ferrocyanide, 100-200mM potassium ferrocyanide, 10-50mM potassium phosphate; Preferably, the first buffer comprises 470mM potassium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0; or 550mM sodium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0.

进一步地,膜包括二嵌段的磷脂膜、二嵌段的高分子聚合物膜、三嵌段的磷脂膜、或三嵌段的高分子聚合物膜。Furthermore, the membrane includes a diblock phospholipid membrane, a diblock high molecular polymer membrane, a triblock phospholipid membrane, or a triblock high molecular polymer membrane.

进一步地,磷脂膜包括下列一种或多种组成的膜:二植烷酰基-磷脂酰胆碱、1,2-二植烷酰基-sn-甘油-3-磷酸胆碱、1,2-二-O-植烷酰基-sn-甘油-3-磷酸胆碱、棕榈酰基-油酰基-磷脂酰胆碱、二油酰基-磷脂酰-甲基酯、二棕榈酰基磷脂酰胆碱、磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰丝氨酸、磷脂酸、磷脂酰肌醇、磷脂酰甘油、鞘磷脂、1,2-二-O-植烷酰基-sn-甘油、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-350]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-550]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二 醇)-750]、1,2-二棕榈酰基-sm-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-1000]、1,2-二棕榈酰基-sm-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-2000]、1,2-二油酰基-sm-甘油-3-磷酸乙醇胺-N-乳糖酰基、GM1神经节苷脂或溶血磷脂酰胆碱。Further, the phospholipid membrane includes a membrane composed of one or more of the following: diphytanoyl-phosphatidylcholine, 1,2-diphytanoyl-sn-glycero-3-phosphocholine, 1,2-di-O-phytanoyl-sn-glycero-3-phosphocholine, palmitoyl-oleoyl-phosphatidylcholine, dioleoyl-phosphatidyl-methyl ester, dipalmitoylphosphatidylcholine, phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidic acid, phosphatidyl Inositol, phosphatidylglycerol, sphingomyelin, 1,2-di-O-phytanoyl-sn-glycerol, 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-350], 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-550], 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)- 1,2-dipalmitoyl-sm-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-750], 1,2-dipalmitoyl-sm-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-1000], 1,2-dipalmitoyl-sm-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000], 1,2-dioleoyl-sm-glycero-3-phosphoethanolamine-N-lactosyl, GM1 ganglioside or lysophosphatidylcholine.

进一步地,高分子聚合物膜包括如下任意一种或多种:聚硅氧烷、聚烯烃、全氟聚醚、全氟烃基聚醚、聚苯乙烯、聚氧丙烯、聚乙酸乙烯酯、聚氧丁烯、聚异戊二烯、聚丁二烯、聚氯乙烯、聚烷基丙烯酸酯、聚烷基甲基丙烯酸酯、聚丙烯腈、聚丙烯、PTHF、聚甲基丙烯酸酯、聚丙烯酸酯、聚砜、聚乙烯醚、聚(环氧丙烷)中的一种或多种的共聚物,C1-C6烷基丙烯酸酯和甲基丙烯酸酯、丙烯酰胺、甲基丙烯酰胺、(C1-C6烷基)丙烯酰胺和甲基丙烯酰胺、N,N-二烷基-丙烯酰胺、乙氧基丙烯酸酯和甲基丙烯酸酯、聚乙二醇单甲基丙烯酸酯和聚乙二醇单甲基醚甲基丙烯酸酯、羟基取代的(C1-C6烷基)丙烯酰胺和甲基丙烯酰胺、羟基取代的C1-C6烷基乙烯基醚、乙烯基磺酸钠、苯乙烯基磺酸钠、2-丙烯酰胺-2-甲基丙磺酸、N-乙烯基吡咯、N-乙烯基-2-吡咯烷酮、2-乙烯基恶唑啉、2-乙烯基-4,4′-双烷基恶唑啉基-5-酮、2,4-乙烯基吡啶、具有3-5个碳原子的乙烯化不饱和羧酸,氨基(C1-C6烷基)-、单(C1-C6烷氨基)(C1-C6烷基)-和双(C1-C6烷氨基)(C1-C6烷基)-丙烯酸酯和甲基丙烯酸酯、烯丙醇、3-三甲基铵甲基丙烯酸2-羟丙基酯氯化物、二甲基氨乙基甲基丙烯酸酯、二甲基氨乙基甲基丙烯酰胺、甘油甲基丙烯酸酯、N-(1,1-二甲基-3-氧代丁基)丙烯酰胺、环亚氨基醚、乙烯基醚、包含环氧衍生物的环醚、环不饱和醚、N-取代环乙亚胺、β-内酯和β-内酰胺、乙烯酮缩醛、乙烯基缩醛和正膦。Further, the high molecular polymer film includes any one or more of the following: copolymers of one or more of polysiloxane, polyolefin, perfluoropolyether, perfluoroalkyl polyether, polystyrene, polyoxypropylene, polyvinyl acetate, polyoxybutylene, polyisoprene, polybutadiene, polyvinyl chloride, polyalkyl acrylate, polyalkyl methacrylate, polyacrylonitrile, polypropylene, PTHF, polymethacrylate, polyacrylate, polysulfone, polyethylene ether, poly(propylene oxide), C1-C6 alkyl acrylate and methacrylate, acrylamide, methacrylamide, (C1-C6 alkyl) acrylamide and methacrylamide, N,N-dialkyl-acrylamide, ethoxy acrylate and methacrylate, polyethylene glycol monomethacrylate and polyethylene glycol monomethyl ether methacrylate, hydroxy-substituted (C1-C6 alkyl) acrylamide and methacrylamide, hydroxy-substituted C1-C6 alkyl vinyl ether, sodium vinyl sulfonate, styrene sodium sulfonate, 2-acrylamide-2-methylpropanesulfonic acid, N-vinylpyrrole, N-vinyl-2-pyrrolidone, 2-vinyloxazoline, 2-vinyl-4,4′-bisalkyloxazolinyl-5-one, 2,4-vinylpyridine, ethylenically unsaturated carboxylic acids having 3 to 5 carbon atoms, amino(C1-C6 alkyl)-, mono(C1-C6 alkylamino)(C1-C6 alkyl)- and bis(C1-C6 alkylamino)(C1-C6 alkyl)- Acrylic and methacrylic esters, allyl alcohol, 3-trimethylammonium 2-hydroxypropyl methacrylate chloride, dimethylaminoethyl methacrylate, dimethylaminoethyl methacrylamide, glycerol methacrylate, N-(1,1-dimethyl-3-oxobutyl)acrylamide, cyclic imino ethers, vinyl ethers, cyclic ethers including epoxy derivatives, cyclic unsaturated ethers, N-substituted cyclic ethylimines, β-lactones and β-lactams, vinyl ketone acetals, vinyl acetals and phosphoranes.

进一步地,孔蛋白包括一种或多种与如下蛋白具有至少70%同源性的蛋白质:细菌淀粉样蛋白分泌通道CsgG、耻垢分枝杆菌孔蛋白、α-溶血素、OmpG、InvG、GspD、Frac、PA63、SP1、气菌溶胞蛋白、plyAB、噬菌体马达蛋白通道phi29、T3、T4、T7、SPP1或gp20c。Further, the porin protein includes one or more proteins having at least 70% homology to the following proteins: bacterial amyloid secretion channel CsgG, Mycobacterium smegmatis porin, α-hemolysin, OmpG, InvG, GspD, Frac, PA63, SP1, Aerobacterial lysin, plyAB, bacteriophage motor protein channel phi29, T3, T4, T7, SPP1 or gp20c.

进一步地,融合方法还包括:调整电压至0V后孵育5-15分钟,优选10分钟;优选地,进行孵育后,使用不含有孔蛋白的第二缓冲液置换含有孔蛋白的第一缓冲液,并在膜的两侧施加电压,检测电流并统计是否为单个孔蛋白与膜融合。Furthermore, the fusion method also includes: adjusting the voltage to 0V and incubating for 5-15 minutes, preferably 10 minutes; preferably, after incubation, using a second buffer solution that does not contain porins to replace the first buffer solution containing porins, and applying voltage to both sides of the membrane, detecting the current and counting whether a single porin is fused with the membrane.

为了实现上述目的,根据本发明的第二个方面,提供了一种孔蛋白插孔缓冲液,该孔蛋白插孔缓冲液含有一价金属离子和/或二价金属离子。In order to achieve the above object, according to a second aspect of the present invention, a porin pore buffer is provided, wherein the porin pore buffer contains monovalent metal ions and/or divalent metal ions.

进一步地,一价金属离子包括钠离子、钾离子或锂离子中的一种或多种,二价金属离子包括钙离子和/或镁离子。Furthermore, the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions, and the divalent metal ions include calcium ions and/or magnesium ions.

进一步地,一价金属离子的浓度包括350~800mM,二价金属离子的浓度包括250~550mM。Furthermore, the concentration of the monovalent metal ions is 350 to 800 mM, and the concentration of the divalent metal ions is 250 to 550 mM.

进一步地,钾离子的浓度包括350~500mM,钠离子的浓度包括470~550mM,镁离子的浓度包括250~550mM;优选地,孔蛋白插孔缓冲液包括:350~500mM氯化钾、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或470~550mM氯化钠、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或250~550mM氯化镁、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或100~200mM铁氰化钾、100~200mM亚铁氰化钾、10~50mM磷酸钾,pH=7.0~8.2;优选地, 缓冲液包括470mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0;或550mM氯化钠、25mM4-羟乙基哌嗪乙磺酸,pH=8.0。Further, the concentration of potassium ions includes 350-500mM, the concentration of sodium ions includes 470-550mM, and the concentration of magnesium ions includes 250-550mM; preferably, the porin pore buffer includes: 350-500mM potassium chloride, 10-50mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=7.0-8.2; or 470-550mM sodium chloride, 10-50mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=7.0-8.2; or 250-550mM magnesium chloride, 10-50mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=7.0-8.2; or 100-200mM potassium ferrocyanide, 100-200mM potassium ferrocyanide, 10-50mM potassium phosphate, pH=7.0-8.2; preferably, The buffer included 470 mM potassium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0; or 550 mM sodium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0.

为了实现上述目的,根据本发明的第三个方面,提供了一种孔蛋白插孔缓冲液组合,该孔蛋白插孔缓冲液组合包括2种孔蛋白插孔缓冲液,2种孔蛋白插孔缓冲液之间的渗透压差值大于等于50mOsm/kg。In order to achieve the above object, according to the third aspect of the present invention, a porin pore buffer combination is provided, the porin pore buffer combination comprises two porin pore buffers, and the osmotic pressure difference between the two porin pore buffers is greater than or equal to 50mOsm/kg.

进一步地,孔蛋白插孔缓冲液含有一价金属离子和/或二价金属离子;优选地,一价金属离子的浓度包括350~800mM,二价金属离子的浓度包括250~550mM。Furthermore, the porin pore buffer contains monovalent metal ions and/or divalent metal ions; preferably, the concentration of the monovalent metal ions is 350-800 mM, and the concentration of the divalent metal ions is 250-550 mM.

进一步地,钾离子的浓度包括350~500mM,钠离子的浓度包括470~550mM,镁离子的浓度包括250~550mM;优选地,孔蛋白插孔缓冲液包括:350~500mM氯化钾,10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或470~550mM氯化钠,10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或250~550mM氯化镁,10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或100~200mM铁氰化钾,100~200mM亚铁氰化钾,10~50mM磷酸钾;优选地,缓冲液包括470mM氯化钾,25mM 4-羟乙基哌嗪乙磺酸,pH=8.0;或550mM氯化钠,25mM 4-羟乙基哌嗪乙磺酸,pH=8.0。Further, the concentration of potassium ions includes 350-500 mM, the concentration of sodium ions includes 470-550 mM, and the concentration of magnesium ions includes 250-550 mM; preferably, the porin pore buffer includes: 350-500 mM potassium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 470-550 mM sodium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2 ; or 250-550mM magnesium chloride, 10-50mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=7.0-8.2; or 100-200mM potassium ferrocyanide, 100-200mM potassium ferrocyanide, 10-50mM potassium phosphate; Preferably, the buffer comprises 470mM potassium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0; or 550mM sodium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0.

进一步地,2种孔蛋白插孔缓冲液之间的渗透压差值大于等于200mOsm/kg。Furthermore, the osmotic pressure difference between the two porin plug buffers is greater than or equal to 200 mOsm/kg.

为了实现上述目的,根据本发明的第四个方面,提供了一种融合方法、或上述孔蛋白插孔缓冲液、或上述孔蛋白插孔缓冲液组合,在纳米孔蛋白测序单元的制备中的应用。In order to achieve the above object, according to the fourth aspect of the present invention, a fusion method, or the above-mentioned porin pore buffer, or the above-mentioned porin pore buffer combination is provided for use in the preparation of a nanopore protein sequencing unit.

应用本发明的技术方案,利用上述孔蛋白与膜的融合方法,能够通过简单的缓冲液和施加电压,实现孔蛋白与膜的融合,完成孔蛋白在膜上的嵌孔。无需脂质体等额外成分的辅助即能够实现孔蛋白的嵌孔,操作简便,融合效率高,且嵌孔的单孔比例(单孔率)高,能够显著提高此种用于纳米孔蛋白测序的测序单元的产率。By applying the technical solution of the present invention and utilizing the above-mentioned method for fusing the porin to the membrane, the fusion of the porin to the membrane can be achieved by a simple buffer and applied voltage, and the porin can be embedded in the membrane. The porin can be embedded without the assistance of additional components such as liposomes, and the operation is simple, the fusion efficiency is high, and the single-hole ratio (single-hole rate) of the embedded hole is high, which can significantly improve the yield of the sequencing unit for nanoporin sequencing.

附图说明BRIEF DESCRIPTION OF THE DRAWINGS

构成本申请的一部分的说明书附图用来提供对本发明的进一步理解,本发明的示意性实施例及其说明用于解释本发明,并不构成对本发明的不当限定。在附图中:The drawings constituting a part of the present application are used to provide a further understanding of the present invention. The exemplary embodiments of the present invention and their descriptions are used to explain the present invention and do not constitute an improper limitation of the present invention. In the drawings:

图1示出了根据本发明实施例一的芯片阵列装置示意图,其中1为地电极;2为单个测序单元的流体贮存器;3为膜;4为流体贮存期的缓冲液,位于膜的第二侧;5为工作电极;6为不同测序单元共用的芯片池,位于膜的第一侧。Figure 1 shows a schematic diagram of a chip array device according to Example 1 of the present invention, wherein 1 is a ground electrode; 2 is a fluid reservoir of a single sequencing unit; 3 is a membrane; 4 is a buffer solution during the fluid storage period, located on the second side of the membrane; 5 is a working electrode; 6 is a chip pool shared by different sequencing units, located on the first side of the membrane.

图2示出了根据本发明实施例一的在缓冲液中嵌入磷脂膜的CsgG单孔的开孔电流图。FIG. 2 shows a graph of the opening current of a single CsgG pore embedded in a phospholipid membrane in a buffer according to Example 1 of the present invention.

图3示出了根据本发明实施例的不同缓冲液体系下的嵌孔数/成膜数结果图。FIG. 3 shows a graph showing the results of the number of embedded holes/number of membranes formed in different buffer systems according to an embodiment of the present invention.

图4示出了根据本发明实施例的不同缓冲液体系下的单孔比例(单孔数/总孔数)结果图。FIG. 4 shows a graph showing the single-well ratio (number of single-wells/total number of wells) under different buffer systems according to an embodiment of the present invention.

图5示出了根据本发明实施例的不同缓冲液体系下嵌孔得到单孔数/成膜数的结果图。 FIG. 5 shows a result diagram of the number of single holes/number of membranes formed by embedding holes in different buffer systems according to an embodiment of the present invention.

图6示出了根据本发明实施例二的不同的缓冲液体系下的电容值对比结果图。FIG. 6 shows a comparison result of capacitance values under different buffer systems according to Example 2 of the present invention.

图7示出了根据本发明实施例五的在不同浓度氯化钾下,嵌孔的单孔比例(单孔数/总孔数)和嵌孔的单孔数/成膜数的结果图。7 shows the result graphs of the single pore ratio (single pore number/total pore number) of embedded pores and the single pore number of embedded pores/film formation number at different potassium chloride concentrations according to Example 5 of the present invention.

图8示出了根据本发明实施例五的不同浓度氯化钠下,嵌孔的单孔比例(单孔数/总孔数)和嵌孔的单孔数/成膜数的结果图。8 shows the result graphs of the single pore ratio (single pore number/total pore number) of embedded holes and the single pore number of embedded holes/film formation number under different sodium chloride concentrations according to Example 5 of the present invention.

具体实施方式DETAILED DESCRIPTION

需要说明的是,在不冲突的情况下,本申请中的实施例及实施例中的特征可以相互组合。下面将结合实施例来详细说明本发明。It should be noted that, in the absence of conflict, the embodiments and features in the embodiments of the present application can be combined with each other. The present invention will be described in detail below in conjunction with the embodiments.

如背景技术所提到的,现有技术中的孔蛋白与膜融合的方法复杂,且融合效率较低,影响后续高通量测序的通量。在本申请中发明人尝试开发一种新的孔蛋白与膜的融合方法,因而提出了本申请的一系列保护方案。As mentioned in the background art, the methods for fusing porins with membranes in the prior art are complex and have low fusion efficiency, which affects the throughput of subsequent high-throughput sequencing. In this application, the inventors attempt to develop a new method for fusing porins with membranes, and thus propose a series of protection schemes of this application.

在本申请第一种典型的实施方式中,提供了一种孔蛋白与膜的融合方法,该融合方法包括:使膜的第一侧分布有第一溶液,使膜的第二侧分布有第二溶液;在膜的两侧施加电压,进行孔蛋白与膜的融合,检测溶液中的电流;当电流增大时,表示孔蛋白插入膜,调整电压至0V,孔蛋白与膜的融合完成;第一溶液包括含有孔蛋白的第一缓冲液,第二溶液包括不含有孔蛋白的第二缓冲液;第一溶液的渗透压大于第二溶液的渗透压。In a first typical embodiment of the present application, a method for fusing porins with membranes is provided, and the fusion method comprises: distributing a first solution on a first side of the membrane and distributing a second solution on a second side of the membrane; applying voltage on both sides of the membrane to fuse the porins with the membrane, and detecting the current in the solution; when the current increases, it indicates that the porins are inserted into the membrane, and the voltage is adjusted to 0 V, and the fusion of the porins with the membrane is completed; the first solution comprises a first buffer solution containing porins, and the second solution comprises a second buffer solution not containing porins; the osmotic pressure of the first solution is greater than the osmotic pressure of the second solution.

在上述融合方法中,膜将第一溶液和第二溶液分隔开,通过在膜的两侧即第一溶液和第二溶液中施加电压,促进孔蛋白从第一溶液插入膜中,实现孔蛋白与膜的融合。上述第一溶液和第二溶液,均为含有一价金属离子和/或二价金属离子的缓冲液,第一溶液和第二溶液的之间存在渗透压的差值,第一溶液的渗透压大于第二溶液的渗透压,此种渗透压的差值能够促进孔蛋白从渗透压较大的区域插入膜中,提高孔蛋白与膜融合的效率。上述第一溶液与第二溶液的渗透压,既可以来源于孔蛋白,也可以来源于第一缓冲液和第二缓冲液成分的差异,不同缓冲液中的离子强度不同从而产生渗透压的差值。In the above fusion method, the membrane separates the first solution and the second solution, and by applying voltage to both sides of the membrane, namely the first solution and the second solution, the porin is promoted to be inserted into the membrane from the first solution, thereby realizing the fusion of the porin and the membrane. The above first solution and the second solution are both buffers containing monovalent metal ions and/or divalent metal ions. There is a difference in osmotic pressure between the first solution and the second solution. The osmotic pressure of the first solution is greater than the osmotic pressure of the second solution. This difference in osmotic pressure can promote the porin to be inserted into the membrane from the area with higher osmotic pressure, thereby improving the efficiency of the fusion of the porin and the membrane. The osmotic pressure of the above first solution and the second solution can be derived from the porin or from the difference in the components of the first buffer and the second buffer. The different ionic strengths in different buffers produce a difference in osmotic pressure.

现有技术中也公开了一种利用渗透压差的方法来启动孔和膜融合的方法,但在该方法中,公开的是一种从渗透压较小的缓冲液向渗透压较大的缓冲液的方向插入孔蛋白的方法。本申请的上述融合方法中孔蛋白的插入方向与该现有技术相反,而本申请的融合方法融合效率高,且嵌孔的单孔比例高,能够显著提高此种用于纳米孔蛋白测序的测序单元的产率。The prior art also discloses a method of using osmotic pressure difference to initiate pore and membrane fusion, but in this method, a method of inserting porins from a buffer with a lower osmotic pressure to a buffer with a higher osmotic pressure is disclosed. The insertion direction of the porins in the above fusion method of the present application is opposite to that of the prior art, and the fusion method of the present application has high fusion efficiency and a high proportion of single pores in the embedded pores, which can significantly improve the yield of sequencing units for nanopore protein sequencing.

上述电流增大的情况,以电压为0.18V举例,当电流值在0-20pA的通道认为孔蛋白与膜的未融合(未嵌孔),对电流值集中在180pA-250pA的孔称为单孔,对电流集中在250pA以上的孔称为多孔。通过上述电流的变化,尤其是电流的增大,能够判断融合是否发生,更进一步可以判断是单个还是多个孔蛋白与膜发生融合。等孔蛋白插入膜后,调整电压至0V,防止更多个孔蛋白继续插入膜中,影响产品的性能。 In the case of the above current increase, taking the voltage of 0.18V as an example, when the current value is 0-20pA, the channel is considered to be unfused with the membrane (not embedded in the hole), the hole with the current value concentrated in 180pA-250pA is called a single hole, and the hole with the current concentrated above 250pA is called a multi-hole. Through the above current changes, especially the increase in current, it can be judged whether fusion occurs, and further it can be judged whether a single or multiple porins fuse with the membrane. After the porins are inserted into the membrane, adjust the voltage to 0V to prevent more porins from continuing to insert into the membrane and affecting the performance of the product.

上述第一侧、第二侧仅表示对于膜的不同侧的命名,不表示对于膜的方向、位置等的限定,第一溶液可以位于膜的任意方向或位置,包括但不限于膜的上方或下方。The above-mentioned first side and second side merely indicate the names of different sides of the membrane, and do not limit the direction, position, etc. of the membrane. The first solution may be located in any direction or position of the membrane, including but not limited to above or below the membrane.

在一种优选的实施例中,第一溶液的渗透压与第二溶液的渗透压至少有50mOsm/kg的差值,优选为至少有200mOsm/kg的差值。In a preferred embodiment, the osmotic pressure of the first solution differs from the osmotic pressure of the second solution by at least 50 mOsm/kg, preferably by at least 200 mOsm/kg.

其中上述渗透压的差值包括但不限于50、60、70、80、90、100、120、140、160、180、200、210、220、230、240、250、260、270、280、290、300、350、400、450或500mOsm/kg。The above osmotic pressure difference includes but is not limited to 50, 60, 70, 80, 90, 100, 120, 140, 160, 180, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290, 300, 350, 400, 450 or 500 mOsm/kg.

在一种优选的实施例中,第一缓冲液和/或第二缓冲液中含有一价金属离子和/或二价金属离子;优选地,一价金属离子包括钠离子、钾离子或锂离子中的一种或多种,二价金属离子包括钙离子和/或镁离子。In a preferred embodiment, the first buffer and/or the second buffer contain monovalent metal ions and/or divalent metal ions; preferably, the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions, and the divalent metal ions include calcium ions and/or magnesium ions.

在缓冲液(buffer)中的一价金属离子和/或二价金属离子,能够促进孔蛋白与膜的融合效率,提高嵌孔的单孔比例,且嵌孔过程中不需要脂质体等额外成分进行辅助即能完成。The monovalent metal ions and/or divalent metal ions in the buffer can promote the fusion efficiency of the porin and the membrane, increase the single-hole ratio of the embedded holes, and the embedding process can be completed without the assistance of additional components such as liposomes.

在一种优选的实施例中,一价金属离子的浓度包括350~800mM,二价金属离子的浓度包括250~550mM。上述一价金属离子浓度包括但不限于350、400、450、470、500、550、600、650、700、750或800mM,上述二价金属离子浓度包括但不限于250、300、350、400、450、500或550mM。In a preferred embodiment, the concentration of monovalent metal ions includes 350-800 mM, and the concentration of divalent metal ions includes 250-550 mM. The above monovalent metal ion concentration includes but is not limited to 350, 400, 450, 470, 500, 550, 600, 650, 700, 750 or 800 mM, and the above divalent metal ion concentration includes but is not limited to 250, 300, 350, 400, 450, 500 or 550 mM.

在一种优选的实施例中,钾离子的浓度包括350~500mM,钠离子的浓度包括470~550mM,镁离子的浓度包括250~550mM;优选地,第一缓冲液和/或第二缓冲液包括:350~500mM(包括但不限于350、375、400、425、450、475或500mM)氯化钾、10~50mM(包括但不限于10、20、30、40或50mM)4-羟乙基哌嗪乙磺酸,pH=7.0~8.2(包括但不限于7.0、7.2、7.4、7.6、7.8、8.0或8.2);或470~550mM氯化钠(包括但不限于470、480、490、500、510、520、530、540或550mM)、10~50mM(包括但不限于10、20、30、40或50mM)4-羟乙基哌嗪乙磺酸,pH=7.0~8.2(包括但不限于7.0、7.2、7.4、7.6、7.8、8.0或8.2);或250~550mM氯化镁(包括但不限于250、300、350、400、450、500或550mM)、10~50mM(包括但不限于10、20、30、40或50mM)4-羟乙基哌嗪乙磺酸,pH=7.0~8.2(包括但不限于7.0、7.2、7.4、7.6、7.8、8.0或8.2);或100~200mM(包括但不限于100、120、140、160、180或200mM)铁氰化钾、100~200mM(包括但不限于100、120、140、160、180或200mM)亚铁氰化钾、10~50mM(包括但不限于10、20、30、40或50mM)磷酸钾,pH=7.0~8.2(包括但不限于7.0、7.2、7.4、7.6、7.8、8.0或8.2);优选地,第一缓冲液包括470mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0;或550mM氯化钠、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0。In a preferred embodiment, the concentration of potassium ions includes 350-500 mM, the concentration of sodium ions includes 470-550 mM, and the concentration of magnesium ions includes 250-550 mM; preferably, the first buffer and/or the second buffer includes: 350-500 mM (including but not limited to 350, 375, 400, 425, 450, 475 or 500 mM) potassium chloride, 10-50 mM (including but not limited to 10, 20, 30, 40 or 50 mM) 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2 (including but not limited to 7.0, 7.2, 7.4, 7.6, 7.8, 8.0 or 8.2); or 470-550 mM sodium chloride (including but not limited to 470, 480, 490, 500, 510, 520, 530, 540 or 550 mM), 10-50 mM (including but not limited to 10, 20, 30, 40 or 50 mM) 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2 (including but not limited to 7.0, 7.2, 7.4, 7.6, 7.8, 8.0 or 8.2); or 250-550 mM chloride magnesium sulfate (including but not limited to 250, 300, 350, 400, 450, 500 or 550 mM), 10-50 mM (including but not limited to 10, 20, 30, 40 or 50 mM) 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2 (including but not limited to 7.0, 7.2, 7.4, 7.6, 7.8, 8.0 or 8.2); or 100-200 mM (including but not limited to 100, 120, 140, 160, 180 or 200 mM) potassium ferrocyanide, 100-200 mM (including but not limited to Preferably, the first buffer comprises 470 mM potassium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0; or 550 mM sodium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0.

上述钾离子浓度包括但不限于350、370、400、420、450、470或500mM,钠离子浓度包括但不限于470、480、490、500、510、520、530、540或550mM,镁离子浓度包括但不限于250、300、350、400、450、500或550mM。 The above-mentioned potassium ion concentration includes but is not limited to 350, 370, 400, 420, 450, 470 or 500 mM, the sodium ion concentration includes but is not limited to 470, 480, 490, 500, 510, 520, 530, 540 or 550 mM, and the magnesium ion concentration includes but is not limited to 250, 300, 350, 400, 450, 500 or 550 mM.

在本申请中,发明人意外发现,利用上述缓冲液进行孔蛋白与膜的融合,能够提高嵌孔率、单孔比例(单孔数/总孔数)、单孔数/成膜数等数据,相较于现有技术中所用的其他嵌孔缓冲液,具有较好的融合效率,能够显著提高此种用于纳米孔蛋白测序的测序单元的产率。In the present application, the inventors unexpectedly discovered that the use of the above-mentioned buffer for the fusion of pore proteins and membranes can improve the embedding rate, single pore ratio (number of single pores/total number of pores), number of single pores/number of membranes, and other data. Compared with other embedding buffers used in the prior art, it has better fusion efficiency and can significantly improve the yield of sequencing units used for nanopore protein sequencing.

在一种优选的实施例中,膜包括二嵌段(diblock)的磷脂膜、二嵌段的高分子聚合物膜、三嵌段(triblock)的磷脂膜、或三嵌段的高分子聚合物膜。In a preferred embodiment, the membrane comprises a diblock phospholipid membrane, a diblock polymer membrane, a triblock phospholipid membrane, or a triblock polymer membrane.

在一种优选的实施例中,磷脂膜包括下列一种或多种组成的膜:二植烷酰基-磷脂酰胆碱、1,2-二植烷酰基-sn-甘油-3-磷酸胆碱、1,2-二-O-植烷酰基-sn-甘油-3-磷酸胆碱、棕榈酰基-油酰基-磷脂酰胆碱、二油酰基-磷脂酰-甲基酯、二棕榈酰基磷脂酰胆碱、磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰丝氨酸、磷脂酸、磷脂酰肌醇、磷脂酰甘油、鞘磷脂、1,2-二-O-植烷酰基-sn-甘油、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-350]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-550]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-750]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-1000]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-2000]、1,2-二油酰基-sn-甘油-3-磷酸乙醇胺-N-乳糖酰基、GM1神经节苷脂或溶血磷脂酰胆碱。In a preferred embodiment, the phospholipid membrane comprises a membrane composed of one or more of the following: diphytanoyl-phosphatidylcholine, 1,2-diphytanoyl-sn-glycero-3-phosphocholine, 1,2-di-O-phytanoyl-sn-glycero-3-phosphocholine, palmitoyl-oleoyl-phosphatidylcholine, dioleoyl-phosphatidyl-methyl ester, dipalmitoylphosphatidylcholine, phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidic acid, phosphatidylinositol, phosphatidylglycerol, sphingomyelin, 1,2-di-O-phytanoyl-sn-glycerol, 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)] -350], 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-550], 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-750], 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-1000], 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000], 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-lactosyl, GM1 ganglioside or lysophosphatidylcholine.

在一种优选的实施例中,高分子聚合物膜包括如下任意一种或多种:聚硅氧烷、聚烯烃、全氟聚醚、全氟烃基聚醚、聚苯乙烯、聚氧丙烯、聚乙酸乙烯酯、聚氧丁烯、聚异戊二烯、聚丁二烯、聚氯乙烯、聚烷基丙烯酸酯、聚烷基甲基丙烯酸酯、聚丙烯腈、聚丙烯、PTHF、聚甲基丙烯酸酯、聚丙烯酸酯、聚砜、聚乙烯醚、聚(环氧丙烷)中的一种或多种的共聚物,C1-C6烷基丙烯酸酯和甲基丙烯酸酯、丙烯酰胺、甲基丙烯酰胺、(C1-C6烷基)丙烯酰胺和甲基丙烯酰胺、N,N-二烷基-丙烯酰胺、乙氧基丙烯酸酯和甲基丙烯酸酯、聚乙二醇单甲基丙烯酸酯和聚乙二醇单甲基醚甲基丙烯酸酯、羟基取代的(C1-C6烷基)丙烯酰胺和甲基丙烯酰胺、羟基取代的C1-C6烷基乙烯基醚、乙烯基磺酸钠、苯乙烯基磺酸钠、2-丙烯酰胺-2-甲基丙磺酸、N-乙烯基吡咯、N-乙烯基-2-吡咯烷酮、2-乙烯基恶唑啉、2-乙烯基-4,4′-双烷基恶唑啉基-5-酮、2,4-乙烯基吡啶、具有3-5个碳原子的乙烯化不饱和羧酸,氨基(C1-C6烷基)-、单(C1-C6烷氨基)(C1-C6烷基)-和双(C1-C6烷氨基)(C1-C6烷基)-丙烯酸酯和甲基丙烯酸酯、烯丙醇、3-三甲基铵甲基丙烯酸2-羟丙基酯氯化物、二甲基氨乙基甲基丙烯酸酯、二甲基氨乙基甲基丙烯酰胺、甘油甲基丙烯酸酯、N-(1,1-二甲基-3-氧代丁基)丙烯酰胺、环亚氨基醚、乙烯基醚、包含环氧衍生物的环醚、环不饱和醚、N-取代环乙亚胺、β-内酯和β-内酰胺、乙烯酮缩醛、乙烯基缩醛和正膦。In a preferred embodiment, the high molecular polymer film includes any one or more of the following: copolymers of one or more of polysiloxane, polyolefin, perfluoropolyether, perfluoroalkyl polyether, polystyrene, polyoxypropylene, polyvinyl acetate, polyoxybutylene, polyisoprene, polybutadiene, polyvinyl chloride, polyalkyl acrylate, polyalkyl methacrylate, polyacrylonitrile, polypropylene, PTHF, polymethacrylate, polyacrylate, polysulfone, polyethylene ether, poly(propylene oxide), C1-C6 alkyl acrylate and methacrylate, acrylamide, methacrylamide, (C1-C6 alkyl) acrylamide and methacrylamide, N,N-dialkyl-acrylamide, ethoxy acrylate and methacrylate, polyethylene glycol monomethacrylate and polyethylene glycol monomethyl ether methacrylate, hydroxy-substituted (C1-C6 alkyl) acrylamide and methacrylamide, hydroxy-substituted C1-C6 alkyl vinyl ether, sodium vinyl sulfonate, Sodium styrene sulfonate, 2-acrylamide-2-methylpropanesulfonic acid, N-vinylpyrrole, N-vinyl-2-pyrrolidone, 2-vinyloxazoline, 2-vinyl-4,4′-bisalkyloxazolinyl-5-one, 2,4-vinylpyridine, ethylenically unsaturated carboxylic acids having 3 to 5 carbon atoms, amino(C1-C6 alkyl)-, mono(C1-C6 alkylamino)(C1-C6 alkyl)- and bis(C1-C6 alkylamino)(C1-C6 alkyl )-acrylates and methacrylates, allyl alcohol, 3-trimethylammonium methacrylate 2-hydroxypropyl chloride, dimethylaminoethyl methacrylate, dimethylaminoethyl methacrylamide, glycerol methacrylate, N-(1,1-dimethyl-3-oxobutyl)acrylamide, cyclic imino ethers, vinyl ethers, cyclic ethers including epoxy derivatives, cyclic unsaturated ethers, N-substituted cyclic ethylimines, β-lactones and β-lactams, vinyl ketone acetals, vinyl acetals and phosphoranes.

在一种优选的实施例中,孔蛋白包括一种或多种与如下蛋白具有至少70%、75%、80%、85%、90%、91%、92%、93%、94%、95%、96%、97%、98%、99%、99.5%、99.7%、99.8%或99.9%同源性的蛋白质:细菌淀粉样蛋白分泌通道CsgG、耻垢分枝杆菌孔蛋白、α-溶血素、OmpG、InvG、GspD、Frac、PA63、SP1、气菌溶胞蛋白、plyAB、噬菌体马达蛋白通道phi29、T3、T4、T7、SPP1或gp20c。In a preferred embodiment, the porin protein comprises one or more proteins having at least 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.5%, 99.7%, 99.8% or 99.9% homology to the bacterial amyloid secretion channel CsgG, Mycobacterium smegmatis porin, α-hemolysin, OmpG, InvG, GspD, Frac, PA63, SP1, Aerobacterial lysin, plyAB, bacteriophage motor protein channel phi29, T3, T4, T7, SPP1 or gp20c.

在一种优选的实施例中,融合方法还包括:调整电压至0V后孵育5-15分钟,优选10分钟;优选地,进行孵育后,使用不含有孔蛋白的第二缓冲液置换含有孔蛋白的第一缓冲液, 并在膜的两侧施加电压,检测电流并统计是否为单个孔蛋白与膜融合。In a preferred embodiment, the fusion method further comprises: adjusting the voltage to 0 V and incubating for 5-15 minutes, preferably 10 minutes; preferably, after incubation, replacing the first buffer containing the porin with a second buffer not containing the porin, A voltage is applied to both sides of the membrane, the current is detected and the number of pores fused to the membrane is counted.

通过上述电流的变化,尤其是电流的增大,能够判断融合是否发生。待孔蛋白插入膜后,调整电压至0V,防止更多个孔蛋白继续插入膜中,影响产品的性能。在电压0V的条件下孵育一段时间,能够提高获得的产品即测序单元的稳定性。孵育一段时间后,将含有孔蛋白的缓冲液置换为不含有孔蛋白的缓冲液,并施加电压,防止更多个孔蛋白继续与膜发生融合,并通过检测电流判断膜上插入的孔蛋白的数量。以电压为0.18V举例,对电流值集中在180pA-250pA的孔称为单孔,即表示在膜上融合有一个孔蛋白;对电流集中在250pA以上的孔称为多孔,即表示在膜上融合有多个孔蛋白。Through the above-mentioned changes in current, especially the increase in current, it is possible to determine whether fusion has occurred. After the porin is inserted into the membrane, the voltage is adjusted to 0V to prevent more porins from continuing to be inserted into the membrane and affecting the performance of the product. Incubating for a period of time under the condition of voltage 0V can improve the stability of the obtained product, i.e., the sequencing unit. After incubation for a period of time, the buffer containing porin is replaced with a buffer containing no porin, and voltage is applied to prevent more porins from continuing to fuse with the membrane, and the number of porins inserted into the membrane is determined by detecting the current. Taking the voltage of 0.18V as an example, the pores with current values concentrated between 180pA-250pA are called single pores, which means that one porin is fused on the membrane; the pores with current values concentrated above 250pA are called multi-pores, which means that multiple porins are fused on the membrane.

在本申请第二种典型的实施方式中,提供了一种孔蛋白插孔缓冲液,上述孔蛋白插孔缓冲液含有一价金属离子和/或二价金属离子。In a second typical embodiment of the present application, a porin pore buffer is provided, wherein the porin pore buffer contains monovalent metal ions and/or divalent metal ions.

在一种优选的实施例中,一价金属离子包括钠离子、钾离子或锂离子中的一种或多种,二价金属离子包括钙离子和/或镁离子。In a preferred embodiment, the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions, and the divalent metal ions include calcium ions and/or magnesium ions.

在一种优选的实施例中,一价金属离子的浓度包括350~800mM,二价金属离子的浓度包括250~550mM。In a preferred embodiment, the concentration of monovalent metal ions is 350-800 mM, and the concentration of divalent metal ions is 250-550 mM.

在一种优选的实施例中,钾离子的浓度包括350~500mM,钠离子的浓度包括470~550mM,镁离子的浓度包括250~550mM;优选地,孔蛋白插孔缓冲液包括:350~500mM氯化钾、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或470~550mM氯化钠、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或250~550mM氯化镁、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或150mM铁氰化钾、150mM亚铁氰化钾、25mM磷酸钾,pH=7.0~8.2;优选地,缓冲液包括470mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0;或550mM氯化钠、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0。In a preferred embodiment, the concentration of potassium ions includes 350-500 mM, the concentration of sodium ions includes 470-550 mM, and the concentration of magnesium ions includes 250-550 mM; preferably, the porin pore buffer includes: 350-500 mM potassium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 470-550 mM sodium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2. 8.2; or 250-550mM magnesium chloride, 10-50mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=7.0-8.2; or 150mM potassium ferrocyanide, 150mM potassium ferrocyanide, 25mM potassium phosphate, pH=7.0-8.2; preferably, the buffer comprises 470mM potassium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0; or 550mM sodium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0.

在本申请第三种典型的实施方式中,提供了一种孔蛋白插孔缓冲液组合,该孔蛋白插孔缓冲液组合包括2种孔蛋白插孔缓冲液,2种孔蛋白插孔缓冲液之间的渗透压差值大于等于50mOsm/kg。In a third typical embodiment of the present application, a porin pore buffer combination is provided, wherein the porin pore buffer combination comprises two porin pore buffers, and the osmotic pressure difference between the two porin pore buffers is greater than or equal to 50 mOsm/kg.

上述渗透压差值包括但不限于大于等于50、60、70、80、90、100、120、140、160、180、200、210、220、230、240、250、260、270、280、290、300、350、400、450或500mOsm/kg。The above osmotic pressure difference includes but is not limited to greater than or equal to 50, 60, 70, 80, 90, 100, 120, 140, 160, 180, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290, 300, 350, 400, 450 or 500 mOsm/kg.

在一种优选的实施例中,孔蛋白插孔缓冲液含有一价金属离子和/或二价金属离子;优选地,一价金属离子的浓度包括350~800mM,二价金属离子的浓度包括250~550mM。In a preferred embodiment, the porin pore buffer contains monovalent metal ions and/or divalent metal ions; preferably, the concentration of the monovalent metal ions is 350-800 mM, and the concentration of the divalent metal ions is 250-550 mM.

在一种优选的实施例中,钾离子的浓度包括350~500mM,钠离子的浓度包括470~550mM,镁离子的浓度包括250~550mM;优选地,孔蛋白插孔缓冲液包括:350~500mM氯化钾、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或470~550mM氯化钠、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或250~550mM氯化镁、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或150mM铁氰化钾、150mM亚铁氰化钾、25mM磷酸钾,pH=7.0~8.2;优选地,缓冲液包括470mM 氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0;或550mM氯化钠、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0。In a preferred embodiment, the concentration of potassium ions includes 350-500 mM, the concentration of sodium ions includes 470-550 mM, and the concentration of magnesium ions includes 250-550 mM; preferably, the porin pore buffer includes: 350-500 mM potassium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 470-550 mM sodium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 250-550 mM magnesium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 150 mM potassium ferrocyanide, 150 mM potassium ferrocyanide, 25 mM potassium phosphate, pH = 7.0-8.2; preferably, the buffer includes 470 mM Potassium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0; or 550 mM sodium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0.

在一种优选的实施例中,2种孔蛋白插孔缓冲液之间的渗透压差值大于等于200mOsm/kg。In a preferred embodiment, the osmotic pressure difference between the two porin plug buffers is greater than or equal to 200 mOsm/kg.

在本申请第四种典型的实施方式中,提供了一种上述融合方法、或上述孔蛋白插孔缓冲液、或上述孔蛋白插孔缓冲液组合,在纳米孔蛋白测序单元的制备中的应用。In a fourth typical embodiment of the present application, there is provided an application of the above-mentioned fusion method, or the above-mentioned poron pore buffer, or the above-mentioned poron pore buffer combination in the preparation of a nanopore protein sequencing unit.

下面将结合具体的实施例来进一步详细解释本申请的有益效果。The beneficial effects of the present application will be further explained in detail below in conjunction with specific embodiments.

实施例一:Embodiment 1:

该实施例展示了对照组实验,在膜两侧使用相同渗透压的缓冲液,即膜两侧均使用缓冲液1(150mM铁氰化钾、150mM亚铁氰化钾、25mM磷酸钾,pH=8.0)嵌孔的结果。本例中使用的孔蛋白是CsgG突变体(野生型氨基酸序列由SEQ ID NO:1所示,突变位点为:Y51A/F56Q/R97W/R192D)。在电生理实验中,将孔蛋白充分混匀在300μL缓冲液1中,推入芯片阵列装置中膜上方一侧(图1中6所示位置)。芯片阵列装置的结构如图1所示,其中1为地电极;2为单个测序单元的流体贮存器;3为膜;4为流体贮存期的缓冲液,位于膜的第二侧(膜下方侧);5为工作电极;6为不同测序单元共用的芯片池,位于膜的第一侧(膜上方侧)。上述融合方法所用的装置包括但不限于图1所示的装置。This embodiment shows the results of a control experiment in which a buffer with the same osmotic pressure was used on both sides of the membrane, that is, buffer 1 (150mM potassium ferrocyanide, 150mM potassium ferrocyanide, 25mM potassium phosphate, pH=8.0) was used to embed holes on both sides of the membrane. The porin used in this example is a CsgG mutant (the wild-type amino acid sequence is shown by SEQ ID NO: 1, and the mutation site is: Y51A/F56Q/R97W/R192D). In the electrophysiological experiment, the porin was thoroughly mixed in 300μL buffer 1 and pushed into the upper side of the membrane in the chip array device (position 6 in Figure 1). The structure of the chip array device is shown in Figure 1, wherein 1 is a ground electrode; 2 is a fluid reservoir for a single sequencing unit; 3 is a membrane; 4 is a buffer for the fluid storage period, located on the second side of the membrane (the side below the membrane); 5 is a working electrode; 6 is a chip pool shared by different sequencing units, located on the first side of the membrane (the side above the membrane). The device used in the above fusion method includes but is not limited to the device shown in Figure 1.

施加0.18V电压,等待孔蛋白插入磷脂膜。当孔蛋白嵌入磷脂膜后,单个通道的电流会出现变化,对于已嵌孔的通道实施0mV电压,以减少该通道上继续嵌孔的可能性。等待所有通道10分钟内未出现新增嵌孔,使用2mL缓冲液1除去膜上方多余的孔蛋白。使用3mL缓冲液(500mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)流经该系统,完全置换膜上方的缓冲液1。在0.18V下对不同通道的嵌孔状态进行统计,根据电流值大小判断每个通道中孔的个数。对电流值在0-20pA的通道被认为未嵌孔,对电流值集中在180pA-250pA的孔称为单孔(如图2所示),对电流集中在250pA以上的孔称为多孔。Apply a voltage of 0.18V and wait for the porin to be inserted into the phospholipid membrane. When the porin is embedded in the phospholipid membrane, the current of a single channel will change. For the channel with a hole, a voltage of 0mV is applied to reduce the possibility of further holes in the channel. Wait for all channels for 10 minutes without the appearance of new holes, and use 2mL of buffer 1 to remove the excess porin above the membrane. Use 3mL of buffer (500mM potassium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) to flow through the system to completely replace the buffer 1 above the membrane. The hole state of different channels is counted at 0.18V, and the number of holes in each channel is determined according to the current value. Channels with current values of 0-20pA are considered to be un-hole-embedded, holes with current values concentrated between 180pA-250pA are called single holes (as shown in Figure 2), and holes with currents concentrated above 250pA are called multi-holes.

野生型CsgG跨膜蛋白氨基酸序列由SEQ ID NO:1:
The amino acid sequence of the wild-type CsgG transmembrane protein is represented by SEQ ID NO: 1:

结果与讨论:Results and Discussion:

使用缓冲液进行嵌孔,嵌孔数/成膜数可达到78%±8%(如图3所示),但是单孔/总孔仅占70%±15%(N=17)(如图4所示),所以单孔数/成膜数仅有54%±9%(N=17)(如图5所示)。膜上含有多个纳米孔通道不能够用来进行后续的单分子检测实验。阵列中具有膜和单孔蛋白的产率,产率越高,测序通量也越高。因此,提高孔蛋白插孔的产率对于测序通量的提高具有重要意义。 Using buffer for embedding, the number of embedded holes/number of membranes can reach 78%±8% (as shown in Figure 3), but the single hole/total hole only accounts for 70%±15% (N=17) (as shown in Figure 4), so the number of single holes/number of membranes is only 54%±9% (N=17) (as shown in Figure 5). The membrane containing multiple nanopore channels cannot be used for subsequent single-molecule detection experiments. The array has a yield of membranes and single pores. The higher the yield, the higher the sequencing throughput. Therefore, improving the yield of pore protein plugs is of great significance for improving sequencing throughput.

在膜两侧的渗透压浓度一致的情况下,膜的面积较大。导致嵌孔时,会出现孔蛋白主动嵌孔,嵌孔的难度有所降低,多孔通道出现的机率大大增加。为提高单孔率,减少主动嵌孔发生的概率,嵌孔方法需要进一步优化。通过改变膜两侧的渗透压,形成不同的渗透压差,可以对膜面积进行有效改变,而从改变嵌孔的难易程度。When the osmotic pressure concentration on both sides of the membrane is consistent, the membrane area is large. When the pores are embedded, the porin will actively embed, the difficulty of embedding is reduced, and the probability of porous channels is greatly increased. In order to increase the single hole rate and reduce the probability of active embedding, the embedding method needs to be further optimized. By changing the osmotic pressure on both sides of the membrane to form different osmotic pressure differences, the membrane area can be effectively changed, thereby changing the difficulty of embedding.

在实施例二到四中,展示了一系列渗透压相近但含有一价或二价不同金属阳离子的嵌孔缓冲液的嵌单孔效果,最终筛出多个可以有效提高单孔率的非等渗嵌孔缓冲液。In Examples 2 to 4, the single-pore embedding effects of a series of embedding buffers with similar osmotic pressures but containing different monovalent or divalent metal cations are demonstrated, and finally a plurality of non-isotonic embedding buffers that can effectively improve the single-pore rate are screened out.

实施例二:Embodiment 2:

本实施中展示了嵌孔优化组的实验,表明改变膜一侧嵌孔所用缓冲液可以显著改善单孔产率。本例中使用实施例一中相同的CsgG孔蛋白突变体。在电生理实验中,推3mL含有氯化钾的缓冲液2(470mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)至芯片池,充分置换膜上方一侧的缓冲液1以避免缓冲液1(buffer1)对该实验的影响。将孔蛋白充分混匀在300μL缓冲液2中((buffer2,470mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0),推入测序芯片池中(膜上方一侧)。膜下方一侧为缓冲液1,含有孔蛋白的缓冲液2的渗透压大于缓冲液1的渗透压,渗透压差值为230mOsm/kg。This embodiment shows the experiment of the pore optimization group, which shows that changing the buffer used for the pore on one side of the membrane can significantly improve the single-pore yield. The same CsgG porin mutant as in Example 1 was used in this example. In the electrophysiological experiment, 3 mL of buffer 2 containing potassium chloride (470 mM potassium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0) was pushed into the chip pool to fully replace the buffer 1 on the upper side of the membrane to avoid the influence of buffer 1 (buffer1) on the experiment. The porin was fully mixed in 300 μL of buffer 2 ((buffer2, 470 mM potassium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0) and pushed into the sequencing chip pool (on the upper side of the membrane). The lower side of the membrane is buffer 1, and the osmotic pressure of buffer 2 containing porin is greater than the osmotic pressure of buffer 1, and the osmotic pressure difference is 230 mOsm/kg.

施加0.18V电压,等待嵌孔。当孔蛋白嵌入磷脂膜后,单个通道的电流会出现变化,对于已嵌孔的通道实施0mV电压,减少该通道上继续嵌孔的可能性。等待10分钟内所有通道未出现新增嵌孔,使用2mL缓冲液2(470mM氯化钾,25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)除去膜上方多余的孔蛋白。使用3mL缓冲液(500mM氯化钾,25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)流经该系统,完全置换膜上方的缓冲液2。在0.18V下对不同通道的嵌孔状态进行统计。根据电流值大小判断每个通道中孔的个数。对电流值在0-20pA的通道被认为未嵌孔,对电流值集中在180pA-250pA的孔称为单孔,对电流集中在250pA以上的孔称为多孔。Apply 0.18V voltage and wait for pores to be embedded. When pores are embedded in the phospholipid membrane, the current of a single channel will change. Apply 0mV voltage to the channel that has been embedded to reduce the possibility of further pores in the channel. Wait for 10 minutes until all channels have no new pores, and use 2mL buffer 2 (470mM potassium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) to remove excess pores above the membrane. Use 3mL buffer (500mM potassium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) to flow through the system to completely replace buffer 2 above the membrane. Count the pore states of different channels at 0.18V. Determine the number of pores in each channel based on the current value. Channels with current values between 0-20pA are considered to have no pores, pores with current values concentrated between 180pA-250pA are called single pores, and pores with currents concentrated above 250pA are called multi-pores.

结果与讨论:Results and Discussion:

使用含有氯化钾的缓冲液2(470mM氯化钾,25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)进行嵌孔,嵌孔数/成膜数可达到82%±5%(如图3所示),单孔/总孔也有较大提升,可达到92%±3%,较缓冲液1的结果提升了31%(如图4所示)。单孔数/成膜数也有大幅度提升,较缓冲液1嵌孔的结果提升了43%,可达77%±8%(如图5所示)。Using buffer 2 containing potassium chloride (470mM potassium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) for embedding, the number of embedded holes/number of membranes can reach 82%±5% (as shown in Figure 3), and the single hole/total hole is also greatly improved, reaching 92%±3%, which is 31% higher than the result of buffer 1 (as shown in Figure 4). The number of single holes/number of membranes is also greatly improved, which is 43% higher than the result of embedding in buffer 1, reaching 77%±8% (as shown in Figure 5).

意外的发现,该缓冲液2可以有效地降低电容(如图6所示)。电容低时一般噪声也较低。缓冲液1的实验条件下集中电容峰值在115pF左右;缓冲液2的实验条件下电容峰值有效降低至75pF左右。It was unexpectedly found that buffer 2 can effectively reduce capacitance (as shown in Figure 6). When capacitance is low, noise is generally low. Under the experimental conditions of buffer 1, the peak capacitance is around 115pF; under the experimental conditions of buffer 2, the peak capacitance is effectively reduced to around 75pF.

实施例三:Embodiment three:

本实施中展示了嵌孔优化组的实验,表明除了钾以外的其他一价离子例如钠,也有显著改善嵌孔产率和结果。This example demonstrates experiments with an optimized set of intercalation ions, showing that other monovalent ions besides potassium, such as sodium, also significantly improve intercalation yield and results.

本例中使用实施例一中相同的CsgG孔蛋白突变体。在电生理实验中,推3mL氯化钠缓 冲液3(buffer3,550mM氯化钠、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0),充分置换膜上方一侧的缓冲液1。将孔蛋白充分混匀在300μL含有氯化钠的缓冲液3中(550mM氯化钠、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0),流入测序芯片池中(膜上方一侧)。膜下方一侧为缓冲液1,含有孔蛋白的缓冲液3的渗透压大于缓冲液1的渗透压,渗透压差值为250mOsm/kg。In this example, the same CsgG porin mutant as in Example 1 was used. In the electrophysiological experiment, 3 mL of sodium chloride buffer was added. Flushing solution 3 (buffer3, 550mM sodium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) fully replaces buffer 1 on the upper side of the membrane. The porin is fully mixed in 300μL buffer 3 containing sodium chloride (550mM sodium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) and flows into the sequencing chip pool (on the upper side of the membrane). The lower side of the membrane is buffer 1. The osmotic pressure of buffer 3 containing porin is greater than the osmotic pressure of buffer 1, and the osmotic pressure difference is 250mOsm/kg.

施加0.18V电压,等待嵌孔。当孔蛋白嵌入磷脂膜后,单个通道的电流会出现变化,对于已嵌孔的通道实施0mV电压保护,减少该通道上继续嵌孔的可能性。等待10分钟内未出现新增嵌孔,使用2mL氯化钠缓冲液3(550mM氯化钠、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)除去膜上方多余的孔蛋白。使用3mL缓冲液(500mM氯化钾,25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)流经该系统,完全置换膜上方的缓冲液3。在0.18V下对不同通道的嵌孔状态进行统计。根据电流值大小判断每个通道中孔的个数。电流值在0-20pA的通道认为未嵌孔,对电流值集中在180pA-250pA的孔称为单孔,对电流集中在250pA以上的孔称为多孔。Apply 0.18V voltage and wait for pores to be embedded. When the porin is embedded in the phospholipid membrane, the current of a single channel will change. For the channel with embedded holes, 0mV voltage protection is implemented to reduce the possibility of further pores in the channel. If no new pores appear within 10 minutes, use 2mL of sodium chloride buffer 3 (550mM sodium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) to remove the excess porin above the membrane. Use 3mL of buffer (500mM potassium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) to flow through the system to completely replace the buffer 3 above the membrane. The pore state of different channels is counted at 0.18V. The number of pores in each channel is determined by the current value. Channels with current values of 0-20pA are considered to be un-embedded, and pores with current values concentrated between 180pA and 250pA are called single pores, and pores with currents concentrated above 250pA are called multi-pores.

结果与讨论:Results and Discussion:

使用含有氯化钠的缓冲液3(550mM氯化钠,25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)进行嵌孔,嵌孔数/成膜数可达到92%±1%(如图3所示),单孔/总孔较缓冲液1嵌孔结果有所提升,可达到85%±4%,提升20%(如图4所示);单孔数/成膜数和缓冲液2嵌孔结果持平,达到78%±4%,较缓冲液1嵌孔的单孔率提升了44%(如图5所示)。When using buffer 3 containing sodium chloride (550 mM sodium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0) for embedding, the number of embedded holes/number of membranes formed can reach 92% ± 1% (as shown in Figure 3), and the single hole/total hole ratio is improved compared with the embedding result of buffer 1, reaching 85% ± 4%, an increase of 20% (as shown in Figure 4); the number of single holes/number of membranes formed is the same as the embedding result of buffer 2, reaching 78% ± 4%, which is 44% higher than the single hole rate of the embedding in buffer 1 (as shown in Figure 5).

实施例四:Embodiment 4:

本实施例中展示了嵌孔优化组的实验,表明除了钾、钠以外的其他其他价位金属离子例如二价金属离子镁,也有显著改善嵌孔产率和结果。This example shows the experiment of the embedding optimization group, which shows that other valence metal ions besides potassium and sodium, such as the divalent metal ion magnesium, can also significantly improve the embedding yield and results.

本例中使用实施例一中相同的CsgG孔蛋白突变体。在电生理实验中,推3mL氯化镁缓冲液4(buffer4,320mM氯化镁、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0),充分置换膜上方一侧的缓冲液1。将孔蛋白充分混匀在300μL含有氯化镁的缓冲液4中(320mM氯化镁、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0),流入测序芯片池中(膜上方一侧)。膜下方一侧为缓冲液1,含有孔蛋白的缓冲液4的渗透压大于缓冲液1的渗透压,渗透压差值为260mOsm/kg。The same CsgG porin mutant as in Example 1 was used in this example. In the electrophysiological experiment, 3 mL of magnesium chloride buffer 4 (buffer 4, 320 mM magnesium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0) was pushed to fully replace the buffer 1 on the upper side of the membrane. The porin was fully mixed in 300 μL of buffer 4 containing magnesium chloride (320 mM magnesium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0) and flowed into the sequencing chip pool (on the upper side of the membrane). The lower side of the membrane was buffer 1, and the osmotic pressure of buffer 4 containing porin was greater than the osmotic pressure of buffer 1, and the osmotic pressure difference was 260 mOsm/kg.

施加0.18V电压,等待嵌孔。当孔蛋白嵌入磷脂膜后,单个通道的电流会出现变化,对于已嵌孔的通道实施0mV电压保护,减少该通道上继续嵌孔的可能性。等待10分钟内未出现新增嵌孔,使用2mL氯化镁缓冲液4(320mM氯化镁、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)除去膜上方多余的孔蛋白。使用3mL缓冲液(500mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)流经该系统,完全置换膜上方的缓冲液4。在0.18V下对不同通道的嵌孔状态进行统计。根据电流值大小判断每个通道中孔的个数。电流值在0-20pA的通道认为未嵌孔,对电流值集中在180pA-250pA的孔称为单孔,对电流集中在250pA以上的孔称为多孔。Apply 0.18V voltage and wait for pores to be embedded. When the porin is embedded in the phospholipid membrane, the current of a single channel will change. For the channel with embedded holes, 0mV voltage protection is implemented to reduce the possibility of further pores in the channel. If no new pores appear within 10 minutes, use 2mL magnesium chloride buffer 4 (320mM magnesium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) to remove excess porin above the membrane. Use 3mL buffer (500mM potassium chloride, 25mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0) to flow through the system to completely replace the buffer 4 above the membrane. The pore state of different channels is counted at 0.18V. The number of pores in each channel is determined according to the current value. Channels with current values of 0-20pA are considered to be un-embedded, and pores with current values concentrated between 180pA and 250pA are called single pores, and pores with currents concentrated above 250pA are called multi-pores.

结果与讨论:Results and Discussion:

使用含有氯化镁的缓冲液4(320mM氯化镁、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0)进行嵌孔,嵌孔数/成膜数可达到82%±6%(如图3所示),单孔/总孔较缓冲液1嵌孔结果有所提 升,可达到96%±2%,提升38%(如图4所示);单孔数/成膜数和缓冲液2、缓冲液3嵌孔结果持平,达到78%±8%,较缓冲液1嵌孔的单孔率提升了44%(如图5所示)。When using buffer 4 containing magnesium chloride (320 mM magnesium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0) for embedding, the number of embedded holes/film formation can reach 82% ± 6% (as shown in Figure 3), and the single hole/total hole result is improved compared with the embedding result of buffer 1. The single hole number/film formation number is the same as the results of buffer 2 and buffer 3, reaching 78%±8%, which is 44% higher than the single hole rate of buffer 1 (as shown in Figure 5).

实施例五:Embodiment five:

在不同浓度的相同金属离子嵌孔缓冲液中,取得的效果有所差别,我们尝试了不同离子浓度的氯化钾溶液、氯化钠溶液,选出了嵌孔效果最优的实验组。The effects obtained in different concentrations of the same metal ion embedding buffer solution were different. We tried potassium chloride solutions and sodium chloride solutions with different ion concentrations and selected the experimental group with the best embedding effect.

如图7所示,单孔数/总孔数在0.47M氯化钾缓冲液和0.5M氯化钾缓冲液中表现最优,但是单孔数/成膜数的比例在0.5M氯化钾缓冲液中表现较差,综上,选出表现氯化钾缓冲液中最好的氯化钾浓度范围在0.35M~0.5M之间,其中,0.47M表现最为优异。As shown in Figure 7, the ratio of single pore number to total pore number is best in 0.47M potassium chloride buffer and 0.5M potassium chloride buffer, but the ratio of single pore number to membrane number is poor in 0.5M potassium chloride buffer. In summary, the best potassium chloride concentration range in potassium chloride buffer is selected between 0.35M and 0.5M, among which 0.47M performs best.

对于氯化钠缓冲液,在氯化钾缓冲液的基础上测试了0.47M-0.55M氯化钠缓冲液,如图8所示,0.5M以上的氯化钠缓冲液表现均优于等渗缓冲buffer1(单孔/总孔:0.70±0.15;单孔/成膜数:0.54±0.09)。For sodium chloride buffer, 0.47M-0.55M sodium chloride buffer was tested based on potassium chloride buffer. As shown in FIG8 , sodium chloride buffers above 0.5M performed better than isotonic buffer 1 (single pore/total pores: 0.70±0.15; single pore/number of membranes formed: 0.54±0.09).

从以上的描述中,可以看出,本发明上述的实施例实现了如下技术效果:利用上述孔蛋白与膜的融合方法,能够通过简单的缓冲液和施加电压,实现孔蛋白与膜的融合,完成孔蛋白在膜上的嵌孔。无需脂质体等额外成分的辅助即能够实现孔蛋白的嵌孔,操作简便,融合效率高,且嵌孔的单孔比例高,能够显著提高此种用于纳米孔蛋白测序的测序单元的产率。且利用上述缓冲液进行的孔蛋白与膜的融合获得的测序单元,相较于现有技术的测序单元具有更低的电容,因而在进行测序时具有更低的噪声,有利于提高后续高通量测序的性能。From the above description, it can be seen that the above embodiments of the present invention achieve the following technical effects: using the above-mentioned method for fusing the porin with the membrane, the fusion of the porin with the membrane can be achieved by a simple buffer and applied voltage, and the porin embedded in the membrane can be completed. The porin embedded can be achieved without the assistance of additional components such as liposomes, the operation is simple, the fusion efficiency is high, and the single hole ratio of the embedded hole is high, which can significantly improve the yield of the sequencing unit for nanoporin sequencing. And the sequencing unit obtained by the fusion of the porin with the membrane using the above-mentioned buffer has a lower capacitance than the sequencing unit of the prior art, and thus has lower noise when sequencing, which is conducive to improving the performance of subsequent high-throughput sequencing.

以上所述仅为本发明的优选实施例而已,并不用于限制本发明,对于本领域的技术人员来说,本发明可以有各种更改和变化。凡在本发明的精神和原则之内,所作的任何修改、等同替换、改进等,均应包含在本发明的保护范围之内。 The above description is only a preferred embodiment of the present invention and is not intended to limit the present invention. For those skilled in the art, the present invention may have various modifications and variations. Any modification, equivalent replacement, improvement, etc. made within the spirit and principle of the present invention shall be included in the protection scope of the present invention.

Claims (19)

一种孔蛋白与膜的融合方法,其特征在于,所述融合方法包括:A method for fusing a porin to a membrane, characterized in that the fusion method comprises: 使所述膜的第一侧分布有第一溶液,使所述膜的第二侧分布有第二溶液;Distributing a first solution on a first side of the membrane and a second solution on a second side of the membrane; 在所述膜的两侧施加电压,进行所述孔蛋白与所述膜的融合,检测溶液中的电流;applying voltage on both sides of the membrane to fuse the porin with the membrane, and detecting the current in the solution; 当所述电流增大时,表示所述孔蛋白插入所述膜,调整所述电压至0V,所述孔蛋白与所述膜的融合完成;When the current increases, it indicates that the porin is inserted into the membrane, and the voltage is adjusted to 0 V, and the fusion of the porin and the membrane is completed; 所述第一溶液包括含有所述孔蛋白的第一缓冲液,所述第二溶液包括不含有所述孔蛋白的第二缓冲液;The first solution includes a first buffer containing the porin, and the second solution includes a second buffer not containing the porin; 所述第一溶液的渗透压大于所述第二溶液的渗透压。The osmotic pressure of the first solution is greater than the osmotic pressure of the second solution. 根据权利要求1所述的融合方法,其特征在于,所述第一溶液的渗透压与所述第二溶液的渗透压至少有50mOsm/kg的差值,优选为至少有200mOsm/kg的差值。The fusion method according to claim 1 is characterized in that the osmotic pressure of the first solution and the osmotic pressure of the second solution have a difference of at least 50mOsm/kg, preferably a difference of at least 200mOsm/kg. 根据权利要求1所述的融合方法,其特征在于,所述第一缓冲液和/或所述第二缓冲液中含有一价金属离子和/或二价金属离子;The fusion method according to claim 1, characterized in that the first buffer and/or the second buffer contains monovalent metal ions and/or divalent metal ions; 优选地,所述一价金属离子包括钠离子、钾离子或锂离子中的一种或多种,所述二价金属离子包括钙离子和/或镁离子。Preferably, the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions, and the divalent metal ions include calcium ions and/or magnesium ions. 根据权利要求3所述的融合方法,其特征在于,所述一价金属离子的浓度包括350~800mM,所述二价金属离子的浓度包括250~550mM。The fusion method according to claim 3 is characterized in that the concentration of the monovalent metal ions is 350 to 800 mM, and the concentration of the divalent metal ions is 250 to 550 mM. 根据权利要求4所述的融合方法,其特征在于,所述钾离子的浓度包括350~500mM,所述钠离子的浓度包括470~550mM,所述镁离子的浓度包括250~550mM;The fusion method according to claim 4, characterized in that the concentration of potassium ions is 350 to 500 mM, the concentration of sodium ions is 470 to 550 mM, and the concentration of magnesium ions is 250 to 550 mM; 优选地,所述第一缓冲液和/或所述第二缓冲液包括:Preferably, the first buffer and/or the second buffer comprises: 350~500mM氯化钾、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或350-500 mM potassium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 470~550mM氯化钠、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或470-550 mM sodium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 250~550mM氯化镁、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或250-550 mM magnesium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 100~200mM铁氰化钾、100~200mM亚铁氰化钾、10-50mM磷酸钾,pH=7.0~8.2;100-200 mM potassium ferrocyanide, 100-200 mM potassium ferrocyanide, 10-50 mM potassium phosphate, pH = 7.0-8.2; 优选地,所述第一缓冲液包括470mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0;或550mM氯化钠、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0。Preferably, the first buffer comprises 470 mM potassium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0; or 550 mM sodium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0. 根据权利要求1所述的融合方法,其特征在于,所述膜包括二嵌段的磷脂膜、二嵌段的高分子聚合物膜、三嵌段的磷脂膜或三嵌段的高分子聚合物膜。The fusion method according to claim 1 is characterized in that the membrane comprises a diblock phospholipid membrane, a diblock polymer membrane, a triblock phospholipid membrane or a triblock polymer membrane. 根据权利要求6所述的融合方法,其特征在于,所述磷脂膜包括下列一种或多种组成的膜: The fusion method according to claim 6, characterized in that the phospholipid membrane comprises a membrane composed of one or more of the following: 二植烷酰基-磷脂酰胆碱、1,2-二植烷酰基-sn-甘油-3-磷酸胆碱、1,2-二-O-植烷酰基-sn-甘油-3-磷酸胆碱、棕榈酰基-油酰基-磷脂酰胆碱、二油酰基-磷脂酰-甲基酯、二棕榈酰基磷脂酰胆碱、磷脂酰胆碱、磷脂酰乙醇胺、磷脂酰丝氨酸、磷脂酸、磷脂酰肌醇、磷脂酰甘油、鞘磷脂、1,2-二-O-植烷酰基-sn-甘油、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-350]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-550]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-750]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-1000]、1,2-二棕榈酰基-sn-甘油-3-磷酸乙醇胺-N-[甲氧基(聚乙二醇)-2000]、1,2-二油酰基-sn-甘油-3-磷酸乙醇胺-N-乳糖酰基、GM1神经节苷脂或溶血磷脂酰胆碱。Diphytanoyl-phosphatidylcholine, 1,2-diphytanoyl-sn-glycero-3-phosphocholine, 1,2-di-O-phytanoyl-sn-glycero-3-phosphocholine, palmitoyl-oleoyl-phosphatidylcholine, dioleoyl-phosphatidyl-methyl ester, dipalmitoylphosphatidylcholine, phosphatidylcholine, phosphatidylethanolamine, phosphatidylserine, phosphatidic acid, phosphatidylinositol, phosphatidylglycerol, sphingomyelin, 1,2-di-O-phytanoyl-sn-glycerol, 1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-350], 1,2-dipalmitoyl 1,2-Dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-550], 1,2-Dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-750], 1,2-Dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-1000], 1,2-Dipalmitoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethylene glycol)-2000], 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine-N-lactosyl, GM1 ganglioside or lysophosphatidylcholine. 根据权利要求6所述的融合方法,其特征在于,所述高分子聚合物膜包括如下任意一种或多种:The fusion method according to claim 6, characterized in that the polymer film comprises any one or more of the following: 聚硅氧烷、聚烯烃、全氟聚醚、全氟烃基聚醚、聚苯乙烯、聚氧丙烯、聚乙酸乙烯酯、聚氧丁烯、聚异戊二烯、聚丁二烯、聚氯乙烯、聚烷基丙烯酸酯、聚烷基甲基丙烯酸酯、聚丙烯腈、聚丙烯、PTHF、聚甲基丙烯酸酯、聚丙烯酸酯、聚砜、聚乙烯醚、聚(环氧丙烷)中的一种或多种的共聚物,C1-C6烷基丙烯酸酯和甲基丙烯酸酯、丙烯酰胺、甲基丙烯酰胺、(C1-C6烷基)丙烯酰胺和甲基丙烯酰胺、N,N-二烷基-丙烯酰胺、乙氧基丙烯酸酯和甲基丙烯酸酯、聚乙二醇单甲基丙烯酸酯和聚乙二醇单甲基醚甲基丙烯酸酯、羟基取代的(C1-C6烷基)丙烯酰胺和甲基丙烯酰胺、羟基取代的C1-C6烷基乙烯基醚、乙烯基磺酸钠、苯乙烯基磺酸钠、2-丙烯酰胺-2-甲基丙磺酸、N-乙烯基吡咯、N-乙烯基-2-吡咯烷酮、2-乙烯基恶唑啉、2-乙烯基-4,4′-双烷基恶唑啉基-5-酮、2,4-乙烯基吡啶、具有3-5个碳原子的乙烯化不饱和羧酸,氨基(C1-C6烷基)-、单(C1-C6烷氨基)(C1-C6烷基)-和双(C1-C6烷氨基)(C1-C6烷基)-丙烯酸酯和甲基丙烯酸酯、烯丙醇、3-三甲基铵甲基丙烯酸2-羟丙基酯氯化物、二甲基氨乙基甲基丙烯酸酯、二甲基氨乙基甲基丙烯酰胺、甘油甲基丙烯酸酯、N-(1,1-二甲基-3-氧代丁基)丙烯酰胺、环亚氨基醚、乙烯基醚、包含环氧衍生物的环醚、环不饱和醚、N-取代环乙亚胺、β-内酯和β-内酰胺、乙烯酮缩醛、乙烯基缩醛和正膦。Copolymers of one or more of polysiloxane, polyolefin, perfluoropolyether, perfluoroalkyl polyether, polystyrene, polyoxypropylene, polyvinyl acetate, polyoxybutylene, polyisoprene, polybutadiene, polyvinyl chloride, polyalkyl acrylate, polyalkyl methacrylate, polyacrylonitrile, polypropylene, PTHF, polymethacrylate, polyacrylate, polysulfone, polyethylene ether, poly(propylene oxide), C1-C6 alkyl acrylate and methacrylate, acrylamide, methacrylamide, (C1-C6 alkyl) acrylamide and methacrylamide, N,N-dialkyl-acrylamide, ethoxy acrylate and methacrylate, polyethylene glycol monomethacrylate and polyethylene glycol monomethyl ether methacrylate, hydroxy-substituted (C1-C6 alkyl) acrylamide and methacrylamide, hydroxy-substituted C1-C6 alkyl vinyl ether, sodium vinyl sulfonate, sodium styrene sulfonate, 2-acrylamide- 2-Methylpropanesulfonic acid, N-vinylpyrrole, N-vinyl-2-pyrrolidone, 2-vinyloxazoline, 2-vinyl-4,4′-bisalkyloxazolinyl-5-one, 2,4-vinylpyridine, ethylenically unsaturated carboxylic acids having 3 to 5 carbon atoms, amino(C1-C6-alkyl)-, mono(C1-C6-alkylamino)(C1-C6-alkyl)- and bis(C1-C6-alkylamino)(C1-C6-alkyl)-acrylates and methacrylates, allyl alcohol, 3-trimethylammonium methacrylate 2-hydroxypropyl chloride, dimethylaminoethyl methacrylate, dimethylaminoethyl methacrylamide, glycerol methacrylate, N-(1,1-dimethyl-3-oxobutyl)acrylamide, cyclic imino ethers, vinyl ethers, cyclic ethers including epoxy derivatives, cyclic unsaturated ethers, N-substituted ethylimines, β-lactones and β-lactams, vinyl ketone acetals, vinyl acetals and phosphoranes. 根据权利要求1所述的融合方法,其特征在于,所述孔蛋白包括一种或多种与如下蛋白具有至少70%同源性的蛋白质:细菌淀粉样蛋白分泌通道CsgG、耻垢分枝杆菌孔蛋白、α-溶血素、OmpG、InvG、GspD、Frac、PA63、SP1、气菌溶胞蛋白、plyAB、噬菌体马达蛋白通道phi29、T3、T4、T7、SPP1或gp20c。The fusion method according to claim 1, characterized in that the porin comprises one or more proteins having at least 70% homology with the following proteins: bacterial amyloid secretion channel CsgG, Mycobacterium smegmatis porin, α-hemolysin, OmpG, InvG, GspD, Frac, PA63, SP1, Aerobacterial lysin, plyAB, bacteriophage motor protein channel phi29, T3, T4, T7, SPP1 or gp20c. 根据权利要求1所述的融合方法,其特征在于,所述融合方法还包括:The fusion method according to claim 1, characterized in that the fusion method further comprises: 调整所述电压至0V后孵育5-15分钟,优选10分钟;Adjust the voltage to 0 V and incubate for 5-15 minutes, preferably 10 minutes; 优选地,进行所述孵育后,使用不含有所述孔蛋白的所述第二缓冲液置换含有所述孔蛋白的所述第一缓冲液,并在所述膜的两侧施加电压,检测所述电流并统计是否为单个孔蛋白与所述膜融合。 Preferably, after the incubation, the first buffer containing the porin is replaced with the second buffer not containing the porin, and a voltage is applied to both sides of the membrane to detect the current and count whether a single porin is fused with the membrane. 一种孔蛋白插孔缓冲液,其特征在于,所述孔蛋白插孔缓冲液含有一价金属离子和/或二价金属离子。A porin pore buffer, characterized in that the porin pore buffer contains monovalent metal ions and/or divalent metal ions. 根据权利要求11所述的孔蛋白插孔缓冲液,其特征在于,所述一价金属离子包括钠离子、钾离子或锂离子中的一种或多种,所述二价金属离子包括钙离子和/或镁离子。The porin pore buffer according to claim 11, characterized in that the monovalent metal ions include one or more of sodium ions, potassium ions or lithium ions, and the divalent metal ions include calcium ions and/or magnesium ions. 根据权利要求12所述的孔蛋白插孔缓冲液,其特征在于,所述一价金属离子的浓度包括350~800mM,所述二价金属离子的浓度包括250~550mM。The porin pore buffer according to claim 12, characterized in that the concentration of the monovalent metal ions is 350 to 800 mM, and the concentration of the divalent metal ions is 250 to 550 mM. 根据权利要求13所述的孔蛋白插孔缓冲液,其特征在于,所述钾离子的浓度包括350~500mM,所述钠离子的浓度包括470~550mM,所述镁离子的浓度包括250~550mM;The porin pore buffer according to claim 13, characterized in that the concentration of potassium ions is 350 to 500 mM, the concentration of sodium ions is 470 to 550 mM, and the concentration of magnesium ions is 250 to 550 mM; 优选地,所述孔蛋白插孔缓冲液包括:Preferably, the porin plug buffer comprises: 350~500mM氯化钾、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或350-500 mM potassium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 470~550mM氯化钠、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或470-550 mM sodium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 250~550mM氯化镁、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或250-550 mM magnesium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 100~200mM铁氰化钾、100~200mM亚铁氰化钾、10~50mM磷酸钾、pH=7.0~8.2;100-200 mM potassium ferrocyanide, 100-200 mM potassium ferrocyanide, 10-50 mM potassium phosphate, pH = 7.0-8.2; 优选地,所述缓冲液包括470mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸、pH=8.0;或550mM氯化钠、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0。Preferably, the buffer comprises 470 mM potassium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0; or 550 mM sodium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0. 一种孔蛋白插孔缓冲液组合,其特征在于,所述孔蛋白插孔缓冲液组合包括2种孔蛋白插孔缓冲液,2种所述孔蛋白插孔缓冲液之间的渗透压差值大于等于50mOsm/kg。A porin pore buffer combination, characterized in that the porin pore buffer combination comprises two porin pore buffers, and the osmotic pressure difference between the two porin pore buffers is greater than or equal to 50mOsm/kg. 根据权利要求15所述的孔蛋白插孔缓冲液组合,其特征在于,所述孔蛋白插孔缓冲液含有一价金属离子和/或二价金属离子;The porin pore buffer combination according to claim 15, characterized in that the porin pore buffer contains monovalent metal ions and/or divalent metal ions; 优选地,所述一价金属离子的浓度包括350~800mM,所述二价金属离子的浓度包括250~550mM。Preferably, the concentration of the monovalent metal ions is 350-800 mM, and the concentration of the divalent metal ions is 250-550 mM. 根据权利要求16所述的孔蛋白插孔缓冲液,其特征在于,所述钾离子的浓度包括350~500mM,所述钠离子的浓度包括470~550mM,所述镁离子的浓度包括250~550mM;The porin pore buffer according to claim 16, characterized in that the concentration of potassium ions is 350 to 500 mM, the concentration of sodium ions is 470 to 550 mM, and the concentration of magnesium ions is 250 to 550 mM; 优选地,所述孔蛋白插孔缓冲液包括:Preferably, the porin plug buffer comprises: 350~500mM氯化钾、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或350-500 mM potassium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 470~550mM氯化钠、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或470-550 mM sodium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 250~550mM氯化镁、10~50mM 4-羟乙基哌嗪乙磺酸,pH=7.0~8.2;或250-550 mM magnesium chloride, 10-50 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 7.0-8.2; or 100~200mM铁氰化钾、100~200mM亚铁氰化钾、10~50mM磷酸钾,pH=7.0~8.2;100-200 mM potassium ferrocyanide, 100-200 mM potassium ferrocyanide, 10-50 mM potassium phosphate, pH = 7.0-8.2; 优选地,所述缓冲液包括470mM氯化钾、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0;或 550mM氯化钠、25mM 4-羟乙基哌嗪乙磺酸,pH=8.0。Preferably, the buffer comprises 470 mM potassium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH=8.0; or 550 mM sodium chloride, 25 mM 4-hydroxyethylpiperazineethanesulfonic acid, pH = 8.0. 根据权利要求15所述的孔蛋白插孔缓冲液组合,其特征在于,2种所述孔蛋白插孔缓冲液之间的渗透压差值大于等于200mOsm/kg。The porin pore buffer combination according to claim 15, characterized in that the osmotic pressure difference between the two porin pore buffers is greater than or equal to 200 mOsm/kg. 权利要求1至10中任一项所述的融合方法、或权利要求11至14中任一项所述的孔蛋白插孔缓冲液、或权利要求15至18中任一项所述的孔蛋白插孔缓冲液组合,在纳米孔蛋白测序单元的制备中的应用。 Use of the fusion method according to any one of claims 1 to 10, or the poron pore buffer according to any one of claims 11 to 14, or the poron pore buffer combination according to any one of claims 15 to 18 in the preparation of a nanoporin sequencing unit.
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