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WO2025043065A1 - Modulators of myc family proto-oncogene protein - Google Patents

Modulators of myc family proto-oncogene protein Download PDF

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Publication number
WO2025043065A1
WO2025043065A1 PCT/US2024/043367 US2024043367W WO2025043065A1 WO 2025043065 A1 WO2025043065 A1 WO 2025043065A1 US 2024043367 W US2024043367 W US 2024043367W WO 2025043065 A1 WO2025043065 A1 WO 2025043065A1
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compound
group
membered
cancer
optionally substituted
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William Greenlee
Stephen J. Shuttleworth
Keith Wilson
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Nalo Therapeutics Inc
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Nalo Therapeutics Inc
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D471/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00
    • C07D471/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, at least one ring being a six-membered ring with one nitrogen atom, not provided for by groups C07D451/00 - C07D463/00 in which the condensed system contains two hetero rings
    • C07D471/08Bridged systems
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D519/00Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00

Definitions

  • NAL-008WO MODULATORS OF MYC FAMILY PROTO-ONCOGENE PROTEIN CROSS-REFERENCE TO RELATED APPLICATIONS [0003] For example, amplification and overexpression of N-Myc can lead to tumorigenesis.
  • C-Myc can also be constitutively expressed in various cancers such as cervix, colon, outcomes. However, strategies for direct modulation of Myc proteins remain elusive, as the Myc proteins are not easily targeted. [0006] Therefore, an ongoing need exists for small-molecule therapeutic modulators of Myc proteins for the treatment of various ailments, diseases and disorders, e.g., cancer. IPTS/128670292.1 Attorney Docket No.
  • NAL-008WO SUMMARY [0007] The present disclosure provides compounds and compositions that are useful as Myc protein modulators, and methods of using the same. Furthermore, the present disclosure contemplates using disclosed compounds and compositions as direct modulators of Myc proteins in the treatment of proliferative disease, such as cancer, or in the treatment of diseases where modulation of Myc family proteins is desired.
  • NAL-008WO R 4 is each independently selected from the group consisting of halogen and C 1 -C 6 alkyl (optionally substituted by one, two or three halogens), or two R 4 together with the carbon to which the R 4 are attached form a C 3 -C 5 carbocyclyl;
  • R’ is each independently selected from the group consisting of H and C 1 -C 6 alkyl (optionally substituted by one, two or three halogens);
  • R 1 is selected from the group consisting of C 3 -C 10 cycloalkyl, spiro C 5 -C 10 bicycloalkyl, heterocyclyl, heteroaryl, cyano, halo, C 1 -C 4 alkyl, and H; wherein C 3 -C 10 cycloalkyl, spiro C 5 -C 10 bicycloalkyl, heterocyclyl, or heteroaryl may be substituted by one, two or three substituents each independently selected from halo and C 1
  • a compound represented by Formula II (Formula II) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: W is selected from the group consisting of N, C-H, and C-F; Y is selected from the group consisting of NH, N-CH 3 , O, S, CH 2 , CF 2 , CH(CH 3 ), ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C 1 -C 4 alkyl), provided that ring X is not wherein * indicates attachment to Y and ** indicates attachment to R 1 and R H is H or C 1 -C 4 alkyl; IPTS/128670292.1 Attorney Docket No.
  • NAL-008WO ring Z is selected from the group consisting of 4, 5, or 7-10-membered N-bound monocyclic heterocyclyl, 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic heterocycle, and 6-10 membered bridged heterocycle, wherein Z may optionally be substituted by one or two substituents each independently selected from the group consisting of halo, hydroxyl, C 1 -C 4 alkyl (optionally substituted by one, two or three halogens), oxo, C 1 -C 4 alkoxy, and cyano; L 1 is bond or C 1 -C 6 alkylene (optionally substituted by one, two or three R 4 ); R 3 is OR’; R 4 is each independently selected from the group consisting of halogen and C 1 -C 6 alkyl (optionally substituted by one, two or three halogens), or two R 4 together with the carbon to which the R 4 are attached form a C 3 -C 5 carb
  • compositions comprising a disclosed compound or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, as described herein, for example a disclosed pharmaceutical composition may include least one or more pharmaceutically acceptable carriers, diluents, stabilizers, excipients, dispersing agents, suspending agents, and/or thickening agents.
  • the present disclosure also provides a method of manufacturing of the compounds described herein, or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof.
  • a method of modulating the amount and activity of a Myc family protein is also provided, for example, an activity of a Myc family IPTS/128670292.1 Attorney Docket No. NAL-008WO protein may be modulated in a cell by contacting a cell with an effective amount of a compound as described herein, or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof.
  • the present disclosure also provides a method of treating a Myc family protein associated disease in a subject in need thereof, the method comprising administering a therapeutically effective amount of a compound described herein, or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, including embodiments in any examples, tables, or figures.
  • the subject is a human subject and the disease is a proliferative disease, such as cancer.
  • DETAILED DESCRIPTION Definitions [0013] Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure pertains. [0014] It is understood that the definitions provided herein are not intended to be mutually exclusive.
  • alkoxy refers to a straight or branched alkyl group attached to oxygen (alkyl-O-).
  • exemplary alkoxy groups include, but are not limited to, alkoxy groups of 1-6 or 2-6 carbon atoms, referred to herein as C 1-6 alkoxy, and C 2-6 alkoxy, respectively.
  • Exemplary alkoxy groups include, but are not limited to methoxy, ethoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2-dimethylbutoxy, etc.
  • alkyl refers to a saturated straight or branched hydrocarbon.
  • exemplary alkyl groups include, but are not limited to, straight or branched hydrocarbons of 1-6, 1-4, or 1-3 carbon atoms, referred to herein as C 1-6 alkyl, C 1-4 alkyl, and C 1- 3 alkyl, respectively.
  • Exemplary alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, 2-methyl-1-butyl, 3-methyl-2-butyl, 2-methyl-1-pentyl, 3-methyl-1-pentyl, 4- methyl-1-pentyl, 2-methyl-2-pentyl, 3-methyl-2-pentyl, 4-methyl-2-pentyl, 2,2-dimethyl-1-butyl, 3,3-dimethyl-1-butyl, 2-ethyl-1-butyl, butyl, isobutyl, t-butyl, pentyl, isopentyl, neopentyl, hexyl, etc.
  • alkylene refers to a di-radical alkyl group. Examples include, methylene (–CH 2 –), ethylene (–CH 2 CH 2 –), propylene (–CH 2 CH 2 CH 2 –), 2- methylpropylene (–CH 2 –CH(CH 3 ) –CH 2 –), hexylene (–(CH 2 ) 6 –) and the like.
  • alkenyl refers to an unsaturated straight or branched hydrocarbon having at least one carbon-carbon double bond.
  • alkenyl groups include, but are not limited to, a straight or branched group of 2-6 or 3-4 carbon atoms, referred to herein as C 2-6 alkenyl, and C 3-4 alkenyl, respectively.
  • Exemplary alkenyl groups include, but are not limited to, vinyl, allyl, butenyl, pentenyl, etc.
  • alkynyl refers to an unsaturated straight or branched hydrocarbon having at least one carbon-carbon triple bond.
  • Exemplary alkynyl groups include, but are not limited to, straight or branched groups of 2-6, or 3-6 carbon atoms, referred to herein as C 2-6 alkynyl, and C 3-6 alkynyl, respectively.
  • Exemplary alkynyl groups include, but are not limited to, ethynyl, propynyl, butynyl, pentynyl, hexynyl, methylpropynyl, etc.
  • alkenylene alkynylene
  • arylene arylalkylene
  • alkylarylene refer to di-radical alkenyl, alkynyl, aryl, arylalkyl, and alkylaryl groups, respectively.
  • alkynyl alkynyl
  • aryl arylalkyl
  • alkylaryl groups alkylaryl groups
  • azido refers to group –N 3 .
  • carbboxyl carboxyl
  • carbboxy carboxylate
  • carbbamoyl refers to the group NH 2 CO–.
  • cycloalkyl or a “carbocyclic group” as used herein refers to a saturated or partially unsaturated hydrocarbon group of, for example, 3-10, 3-6, or 4-6 carbons, referred to herein as C 3-10 cycloalkyl , or C 4-6 cycloalkyl, respectively, and which may be monocyclic or bicyclic ring structures, e.g.4-9 or 4-6 membered saturated ring structures, including bridged, fused or spirocyclic rings.
  • cycloalkyl groups include, but are not limited to, adamantanyl, cyclohexyl, cyclopentyl, cyclopentenyl, cyclobutyl, cyclopropyl, and indanyl.
  • the groups are interchangeably and refer to a cyclohexyl group.
  • cyano and “carbonitrile” refer to the group –CN.
  • the term “formyl” refers to the group –C(O)H.
  • the terms “halo” and “halogen” are used in the conventional sense to refer to a chloro, bromo, fluoro or iodo substituent.
  • the terms “hydroxy” and “hydroxyl” refer to the group -OH.
  • the terms “heteroaryl” or “heteroaromatic group” as used herein refers to a monocyclic aromatic 5-6 membered ring system containing one or more heteroatoms, for example one to three heteroatoms, such as nitrogen, oxygen, and sulfur.
  • heteroaryl ring may be linked to the adjacent radical though carbon or nitrogen.
  • heteroaryl rings include but are not limited to furan, thiophene, pyrrole, thiazole, oxazole, isothiazole, isoxazole, imidazole, pyrazole, triazole, pyridine or pyrimidine etc.
  • heterocyclyl or “heterocyclic group” are art-recognized and refer to e.g. saturated or partially unsaturated, 4-10 membered monocyclic or bicyclic ring structures, or e.g.
  • heterocyclyl rings may be linked to the adjacent radical through carbon or nitrogen.
  • heterocyclyl groups include, but are not limited to, pyrrolidine, piperidine, morpholine, thiomorpholine, piperazine, oxetane, azetidine, tetrahydrofuran or dihydrofuran etc.
  • nitro refers to the group –NO 2 .
  • the term “isomers” refers to compounds comprising the same numbers and types of atoms or components, but with different structural arrangement and connectivity of the atoms.
  • the term “tautomer” refers to one of two or more structural isomers which readily convert from one isomeric form to another and which exist in equilibrium.
  • the compounds of the disclosure may contain one or more chiral centers and, therefore, exist as stereoisomers.
  • stereoisomers when used herein consist of all enantiomers or diastereomers.
  • the compounds of the disclosure may contain one or more double bonds and, therefore, exist as geometric isomers resulting from the arrangement of substituents around a carbon-carbon double bond.
  • the symbol denotes a bond that may be a single, double or triple bond as described herein.
  • Substituents around a carbon-carbon double bond are designated as being in the “Z” configuration wherein the terms “Z” and “E” are used in accordance with IUPAC standards. Unless otherwise specified, structures depicting double bonds encompass both the “E” and “Z” isomers.
  • Substituents around a carbon-carbon double bond alternatively can be referred to as “cis” or “trans,” where “cis” represents substituents on the same side of the double bond and “trans” represents substituents on opposite sides of the double bond.
  • Compounds of the disclosure may contain a carbocyclic or heterocyclic ring and therefore, exist as geometric isomers resulting from the arrangement of substituents around the ring.
  • Substituents around a carbocyclic or heterocyclic ring may be referred to as “cis” or “trans”, where the term “cis” represents substituents on the same side of the plane of the ring and the term “trans” represents substituents on opposite sides of the plane of the ring.
  • Stereoselective syntheses a chemical or enzymatic reaction in which a single reactant forms an unequal mixture of stereoisomers during the creation of a new stereocenter or during the transformation of a pre-existing one, are well known in the art.
  • Stereoselective syntheses encompass both enantio- and diastereoselective transformations, and may involve the use of chiral auxiliaries. For examples, see Carreira and Kvaerno, Classics in Stereoselective Synthesis, Wiley-VCH: Weinheim, 2009.
  • a disclosed compound can exist in solvated as well as unsolvated forms with pharmaceutically acceptable solvents such as water, ethanol, and the like, and it is intended that the present disclosure embrace both solvated and unsolvated forms.
  • a disclosed compound is amorphous.
  • a disclosed compound is a single polymorph.
  • a disclosed compound is a mixture of polymorphs.
  • a disclosed compound is in a crystalline form.
  • the present disclosure also embraces isotopically labeled compounds of the disclosure which are identical to those recited herein, except that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature.
  • isotopes examples include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, sulfur, fluorine and chlorine, such as 2 H, 3 H, 13 C, 14 C, 15 N, 18 O, 17 O, 31 P, 32 P, 35 S, 18 F, and 36 Cl, respectively.
  • a compound of the disclosure may have one or more H atom replaced with deuterium.
  • Certain isotopically-labeled disclosed compounds those labeled with 3 H and 14 C) are useful in compound and/or substrate tissue distribution assays. Tritiated 3 H) and carbon-14 (i.e., 14 C) isotopes are particularly preferred for their ease of preparation and detectability.
  • Isotopically labeled compounds of the present disclosure can generally be prepared by following procedures analogous to those disclosed in the examples herein by substituting an isotopically labeled reagent for a non-isotopically labeled reagent [0044]
  • singular articles such as “a,” “an” and “the” and similar referents in the context of describing the elements are to be construed to cover both the singular and the IPTS/128670292.1 Attorney Docket No.
  • the term “about” refers to a ⁇ 10% variation from the nominal value unless otherwise indicated or inferred. Where a percentage is provided with respect to an amount of a component or material in a composition, the percentage should be understood to be a percentage based on weight, unless otherwise stated or understood from the context. [0046] Where a molecular weight is provided and not an absolute value, for example, of a polymer, then the molecular weight should be understood to be an average molecule weight, unless otherwise stated or understood from the context.
  • a dash (“–”) that is not between two letters or symbols refers to a point of bonding or attachment for a substituent.
  • —NH 2 is attached through the nitrogen atom.
  • active agent drug
  • drug drug
  • active pharmaceutical ingredient active pharmaceutical ingredient
  • prodrug refers to compounds that are transformed in vivo to provide a compound or pharmaceutically acceptable salt, hydrate or solvate of the compound IPTS/128670292.1 Attorney Docket No. NAL-008WO described herein.
  • the transformation can occur by various mechanisms (i.e., esterase, amidase, phosphatase, oxidative and/or reductive metabolism) in various locations (i.e., in the intestinal lumen or upon transit into the intestine, blood, or liver).
  • the term “modulator” refers to a compound or composition that increases or decreases the level of a target or the function of a target, which may be, but is not limited to, a Myc family protein, such as c-Myc, N-Myc, L-Myc and human Myc.
  • the term “degrader” refers to a compound or composition that decreases the amount of a target or the activity of a target.
  • the target may be, but is not limited to, a Myc family protein comprising c-Myc, N-Myc, L-Myc and human Myc.
  • the term “degrading” refers to a method or process that decreases the amount of a target or the activity of a target.
  • the target may be, but is not limited to, a Myc family protein comprising c-Myc, N-Myc, L-Myc and human Myc.
  • Myc family protein refers to any one of the proteins c- Myc, N-Myc, or L-Myc as described herein.
  • a Myc protein is a c-Myc protein.
  • a Myc protein is a N-Myc protein.
  • a Myc protein is a L-Myc protein.
  • a Myc protein is a human c-Myc protein. In some embodiments, a Myc protein is a human N-Myc protein. In some embodiments, a Myc protein is a human L-Myc protein. In some embodiments, a Myc family protein is a human Myc family protein. [0055] As used herein, the terms “N-Myc” and “MycN” can be used interchangeably and refer to the protein “V-Myc myelocytomatosis viral related oncogene, neuroblastoma derived” and include the wildtype and mutant forms of the protein.
  • MycN refers to the protein associated with one or more of database entries of Entrez Gene 4613, OMIM 164840, UniProt P04198, and RegSeq NP_005369.
  • c-Myc refers to the protein “V-Myc myelocytomatosis viral oncogene” and include the wildtype and mutant forms of the protein.
  • c-Myc refers to the protein associated with one or more of database entries of Entrez Gene 4609, OMIM 190080, UniProt P01106, and RegSeq NP_002458.
  • L-Myc refers to the protein “V-Myc myelocytomatosis viral oncogene homolog, lung carcinoma derived” and include the wildtype and mutant forms of IPTS/128670292.1 Attorney Docket No. NAL-008WO the protein.
  • L-Myc refers to the protein associated with one or more of database entries of Entrez Gene 4610, OMIM 164850, UniProt P12524, and RegSeq NP_001028253.
  • the terms “individual,” “host,” “subject,” and “patient” are used interchangeably herein, and refer to an animal, including, but not limited to, human and non-human primates, including simians and humans; rodents, including rats and mice; bovines; equines; ovines; felines; canines; and the like.
  • "Mammal” means a member or members of any mammalian species, and includes, by way of example, canines, felines, equines, bovines, ovines, rodentia, etc. and primates, i.e., non-human primates, and humans.
  • Non-human animal models i.e., mammals, non-human primates, murines, lagomorpha, etc.
  • the terms “treating,” “treatment,” and the like refer to obtaining a desired pharmacologic and/or physiologic effect, such as reduction of tumor burden.
  • the effect may be prophylactic in terms of completely or partially preventing a disease or symptom thereof and/or may be therapeutic in terms of a partial or complete cure for a disease and/or adverse effect attributable to the disease.
  • Treatment covers any treatment of a disease in a mammal, particularly in a human and includes: (a) preventing the disease or a symptom of a disease from occurring in a subject which may be predisposed to the disease but has not yet been diagnosed as having it (i.e., including diseases that may be associated with or caused by a primary disease); (b) inhibiting the disease, i.e., arresting its development; and (c) relieving the disease, i.e., causing regression of the disease (i.e., reduction in of tumor burden).
  • certain methods described herein treat cancer associated with the signaling pathway of a Myc family protein, such as c-Myc, N-Myc, L-Myc or human Myc.
  • a Myc family protein such as c-Myc, N-Myc, L-Myc or human Myc.
  • pharmaceutically acceptable salt refers to a salt which is acceptable for administration to a subject. It is understood that such salts, with counter ions, will have acceptable mammalian safety for a given dosage regime. Such salts can also be derived from pharmaceutically acceptable inorganic or organic bases and from pharmaceutically acceptable inorganic or organic acids, and may comprise organic and inorganic counter ions.
  • salts include, but are not limited to: acetate, adipate, alginate, aspartate, benzoate, benzenesulfonate, bisulfate, butyrate, citrate, camphorate, camphorsulfonate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, fumarate, flucoheptanoate, glycerophosphate, hemisulfate, heptanoate, hexanoate, hydrochloride, hydrobromide, hydroiodide, 2-hydroxyethanesulfonate, lactate, maleate, methanesulfonate, 2- naphthalene
  • salts include anions of the compounds of the present disclosure compounded with a suitable cation such as N + , NH 4 + , and NW 4 + (where W can be a C 1 -C 8 alkyl group), and the like.
  • a suitable cation such as N + , NH 4 + , and NW 4 + (where W can be a C 1 -C 8 alkyl group), and the like.
  • salts of the compounds of the present disclosure can be pharmaceutically acceptable.
  • salts of acids and bases that are non-pharmaceutically acceptable may also find use, for example, in the preparation or purification of a pharmaceutically acceptable compound.
  • Compounds included in the present compositions that are basic in nature are capable of forming a wide variety of salts with various inorganic and organic acids.
  • the acids that can be used to prepare pharmaceutically acceptable acid addition salts of such basic compounds are those that form non-toxic acid addition salts, i.e., salts containing pharmacologically acceptable anions, including but not limited to, malate, oxalate, chloride, bromide, iodide, nitrate, sulfate, bisulfate, phosphate, acid phosphate, isonicotinate, acetate, lactate, salicylate, citrate, tartrate, oleate, tannate, pantothenate, bitartrate, ascorbate, succinate, maleate, gentisinate, fumarate, gluconate, glucaronate, saccharate, formate, benzoate, glutamate, methanesulfonate, ethanesulfonate, benzenesulfonate, p-toluenesulfonate and pamoate (i.e., 1,1'-methylene-bis
  • Compounds included in the present compositions that are acidic in nature are capable of forming base salts with various pharmacologically acceptable cations.
  • Examples of such salts include alkali metal or alkaline earth metal salts and, particularly, calcium, magnesium, sodium, lithium, zinc, potassium, and iron salts.
  • Compounds included in the present compositions that include a basic or acidic moiety can also form pharmaceutically acceptable salts with various amino acids.
  • the compounds of the disclosure can contain both acidic and basic groups; for example, one amino and one carboxylic IPTS/128670292.1 Attorney Docket No. NAL-008WO acid group. In such a case, the compound can exist as an acid addition salt, a zwitterion, or a base salt.
  • the terms “determining,” “measuring,” “assessing,” and “assaying” are used interchangeably and include both quantitative and qualitative determinations.
  • the phrase “signaling pathway” refers to a series of interactions between cellular components, both intracellular and extracellular, that conveys a change to one or more other components in a living organism, which may cause a subsequent change to additional component.
  • the changes conveyed by one signaling pathway may propagate to other signaling pathway components.
  • cellular components include, but are not limited to, proteins, nucleic acids, peptides, lipids and small molecules.
  • the terms “effective amount” and “therapeutically effective amount” are used interchangeably and refer to the amount of a compound that, when administered to a mammal or other subject for treating a disease, condition, or disorder, is sufficient to affect such treatment for the disease, condition, or disorder.
  • the “effective amount” or “therapeutically effective amount” will vary depending on the compound, the disease and its severity and the age, weight, etc., of the subject to be treated.
  • the terms “pharmaceutically acceptable excipient,” “pharmaceutically acceptable diluent,” “pharmaceutically acceptable carrier,” and “pharmaceutically acceptable adjuvant” refer to an excipient, diluent, carrier, and adjuvant that are useful in preparing a pharmaceutical composition that are generally safe, non-toxic and neither biologically nor otherwise undesirable, and include an excipient, diluent, carrier, and adjuvant that are acceptable for veterinary use as well as human pharmaceutical use.
  • the phrase “a pharmaceutically acceptable excipient, diluent, carrier and adjuvant” as used in the specification and claims includes both one and more than one such excipient, diluent, carrier, and adjuvant.
  • the term “pharmaceutical composition” is meant to encompass a composition suitable for administration to a subject, such as a mammal, especially a human.
  • a “pharmaceutical composition” is sterile, and free of contaminants that are capable of eliciting an undesirable response within the subject (i.e., the compound(s) in the pharmaceutical composition is pharmaceutical grade).
  • Pharmaceutical compositions can be designed for administration to subjects or patients in need thereof via a number of different routes of IPTS/128670292.1 Attorney Docket No. NAL-008WO administration including oral, buccal, rectal, parenteral, intraperitoneal, intradermal, intracheal, intramuscular, subcutaneous, and the like.
  • references to or depiction of a certain element such as hydrogen or H is meant to include all isotopes of that element.
  • an R group is defined to include hydrogen or H, it also includes deuterium and tritium.
  • Compounds comprising radioisotopes such as tritium, 14 C, 32 P and 35 S are thus within the scope of the present technology. Procedures for inserting such labels into the compounds of the present technology will be readily apparent to those skilled in the art based on the disclosure herein.
  • compounds described herein include enriched or resolved optical isomers at any or all asymmetric atoms as are apparent from the depictions. Racemic mixtures of (R)-enantiomer and (S)-enantiomer, and enantio-enriched stereomeric mixtures comprising of (R)- and (S)-enantiomers, as well as the individual optical isomers can be isolated or synthesized so as to be substantially free of their enantiomeric or diastereomeric partners, and these stereoisomers are all within the scope of the present technology. [0073]
  • the compounds described herein may exist as solvates, especially hydrates, and unless otherwise specified, all such solvates and hydrates are intended.
  • Hydrates may form during manufacture of the compounds or compositions comprising the compounds, or hydrates may form over time due to the hygroscopic nature of the compounds.
  • Compounds of the present technology may exist as organic solvates as well, including DMF, ether, and alcohol solvates, among others. The identification and preparation of any particular solvate is within the skill of the ordinary artisan of synthetic organic or medicinal chemistry.
  • the text refers to various embodiments of the present compounds, compositions, and methods. The various embodiments described are meant to provide a variety of illustrative examples and should not be construed as descriptions of alternative species. Rather, it should be noted that the descriptions of various embodiments provided herein may be of overlapping scope.
  • the embodiments discussed herein are merely illustrative and are not meant to limit the scope of the present technology.
  • Compounds IPTS/128670292.1 Attorney Docket No. NAL-008WO [0075] The disclosure is generally directed to compounds that modulate (e.g., degrade) MycN and/or MycC, and may therefore have significant antineoplastic properties.
  • the disclosed compounds and pharmaceutical compositions thereof find use in a variety of applications in which the modulation of the amount and activity of a Myc protein is desired, including use as potent antineoplastic agents.
  • a compound of Formula I (Formula I) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: W is selected from the group consisting of N, C-H, and C-F; Y is selected from the group consisting of NH, N-CH 3 , O, S, CH 2 , CF 2 , CH(CH 3 ), ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C 1 -C 4 alkyl), provided that ring X is not wherein * indicates attachment to Y and ** indicates attachment to R 1 and R H is H or C1-C4 alkyl; ring Z is a 4-10 membered N-bound heterocyclic, wherein Z may optionally be substituted by one or two substituents each independently selected from the group consisting of halo, hydroxyl, C 1 -
  • NAL-008WO R 4 is each independently selected from the group consisting of halogen and C 1 -C 6 alkyl (optionally substituted by one, two or three halogens), or two R 4 together with the carbon to which the R 4 are attached form a C 3 -C 5 carbocyclyl;
  • R’ is each independently selected from the group consisting of H and C 1 -C 6 alkyl (optionally substituted by one, two or three halogens);
  • R 1 is selected from the group consisting of C 3 -C 10 cycloalkyl, spiro C 5 -C 10 bicycloalkyl, heterocyclyl, heteroaryl, cyano, halo, C 1 -C 4 alkyl, and H; wherein C 3 -C 10 cycloalkyl, spiro C 5 -C 10 bicycloalkyl, heterocyclyl, or heteroaryl may be substituted by one, two or three substituents each independently selected from halo and C 1
  • Y is NH, N-CH 3 , O, S, CH 2 , CF 2 , CH(CH 3 ), or C(CH 3 ) 2
  • W is C-H or C-F.
  • W is N.
  • W is N and Y is NH, and the compound is represented by the Formula Ia: (Formula Ia) or a pharmaceutically acceptable salt, stereoisomer and/or N-oxide thereof.
  • R 1 is a 5-6 membered heterocyclyl or C 3 -C 6 cycloalkyl.
  • R 1 is C 3 -C 6 cycloalkyl optionally substituted by one or two substituents each independently selected from halo and C 1 -C 4 alkyl (optionally substituted by one, two or three halogens). In some embodiments, R 1 is a C 3 -C 6 cycloalkyl.
  • R 1 is cyclopropyl, cyclobutyl, or cyclopentyl. In some embodiments, R 1 is cyclopropyl or cyclopentyl. In some embodiments, R 1 is cyclopropyl. In some embodiments, R 1 is cyclopentyl.
  • R 1 is C 3 -C 6 cycloalkyl optionally substituted by one or two substituents each independently selected from halo and C 1 -C 4 alkyl (optionally substituted by one, two or three halogens). In some embodiments, R 1 is a C 3 -C 6 cycloalkyl.
  • R 1 is cyclopropyl, cyclobutyl, or cyclopentyl. In some embodiments, R 1 is cyclopropyl or cyclopentyl. In some embodiments, R 1 is cyclopropyl. In some embodiments, R 1 is cyclopentyl.
  • NAL-008WO R 3 is OR”;
  • R” is H or C 1 -C 6 alkyl (optionally substituted by one, two or three halogens);
  • ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C 1 -C 4 alkyl), provided that ring X is not wherein * indicates attachment to Y and ** indicates attachment to R 1 and R H is H or C 1 -C 4 alkyl; and
  • R 2 is selected from the group consisting of H, F, CF 3 , -C(O)-O-methyl, -C(O)OH, -O- methyl, -O-ethyl, C 3 -C 7 cycloalkyl, and heterocyclyl.
  • R 2 is H or F. In some embodiments, R 2 is H.
  • Pharmaceutical Compositions and Formulations [00108] The compounds, prodrugs, and compositions described herein can be useful as pharmaceutical compositions for administration to a subject in need thereof. [00109] Accordingly, pharmaceutical compositions are presented that can comprise at least a compound described herein, a pharmaceutically acceptable salt thereof, or a prodrug thereof, and at least one pharmaceutically acceptable carriers, diluent, stabilizers, excipients, dispersing agents, suspending agents, or thickening agents.
  • a disclosed pharmaceutical compositions may include one or more of the disclosed compounds, pharmaceutically acceptable salts, or prodrugs described herein.
  • Contemplated compositions may include a compound, a pharmaceutically acceptable salt thereof, or a prodrug thereof in a therapeutically effective amount, for example, a disclosed pharmaceutical composition may be formulated for parenteral administration to a subject in need thereof, formulated for intravenous administration to a subject in need thereof, or formulated for subcutaneous administration to a subject in need thereof.
  • Methods of Treatment include the use of compounds, prodrugs, and pharmaceutical compositions described herein to treat a Myc protein associated proliferative disease in a subject in need thereof.
  • Such proliferative diseases include cancer, for example, a cancer selected from a group consisting of head and neck cancer, nervous system cancer, brain cancer, neuroblastoma, lung/mediastinum cancer, breast cancer, esophageal IPTS/128670292.1 Attorney Docket No.
  • NAL-008WO cancer stomach cancer, liver cancer, biliary tract cancer, pancreatic cancer, small bowel cancer, large bowel cancer, colorectal cancer, gynecological cancer, genito-urinary cancer, ovarian cancer, thyroid gland cancer, adrenal gland cancer, skin cancer, melanoma, bone sarcoma, soft tissue sarcoma, pediatric malignancy, Hodgkin's disease, non-Hodgkin's lymphoma, myeloma, leukemia, and metastasis from an unknown primary site.
  • a contemplated method of treating includes treating a cancer that is a Myc protein associated cancer, e.g., wherein the Myc protein is selected from the group consisting of a N-Myc protein, a c-MYc protein, a L-Myc protein, a human N-Myc protein, a human c-Myc protein, and a human L-Myc protein.
  • a cancer selected from the group consisting of neuroblastoma, small cell lung carcinoma, breast cancer or a hematopoietic cancer.
  • a disclosed method to treat cancer further comprises a second therapy, wherein the secondary therapy is an antineoplastic therapy
  • a contemplated method may further comprise administering an antineoplastic therapy such as one or more agents selected from a DNA topoisomerase I or II inhibitor, a DNA damaging agent, an immunotherapeutic agent (e.g., an antibody, cytokine, immune checkpoint inhibitor or cancer vaccine), an antimetabolite or a thymidylate synthase (TS) inhibitor, a microtubule targeted agent, ionizing radiation, an inhibitor of a mitosis regulator or a mitotic checkpoint regulator, an inhibitor of a DNA damage signal transducer, and an inhibitor of a DNA damage repair enzyme.
  • an antineoplastic therapy such as one or more agents selected from a DNA topoisomerase I or II inhibitor, a DNA damaging agent, an immunotherapeutic agent (e.g., an antibody, cytokine, immune checkpoint inhibitor or cancer vaccine), an antimetabolite or a thymidy
  • additional antineoplastic therapy may be selected from the group consisting of immunotherapy (e.g., immuno-oncologic therapy), radiation therapy, photodynamic therapy, gene-directed enzyme prodrug therapy (GDEPT), antibody-directed enzyme prodrug therapy (ADEPT), gene therapy, and controlled diets.
  • immunotherapy e.g., immuno-oncologic therapy
  • radiation therapy e.g., photodynamic therapy
  • gene-directed enzyme prodrug therapy GDEPT
  • ADEPT antibody-directed enzyme prodrug therapy
  • gene therapy e.g., anti-directed enzyme prodrug therapy
  • the present disclosure also contemplates the use of compounds, prodrugs, and pharmaceutical compositions described herein to modulate the amount and activity of a Myc protein (in vitro or in a patient), where the Myc protein may be for example a N-Myc protein, a c-MYc protein, a L-Myc protein, a human N-Myc protein, a human c-Myc protein, and/or a human L-My
  • the disclosure provides a method of modulating the amount (e.g., the concentration) and/or activity of a Myc protein such as (e.g. degrading a Myc protein, or modulating the rate of degradation of a Myc protein) that comprises contacting a Myc protein IPTS/128670292.1 Attorney Docket No. NAL-008WO with an effective amount of a compound described herein, or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, including embodiments or from any examples, tables or figures.
  • Contemplated methods include methods of modulating the protein-protein interactions of the Myc family protein, or a method of decreasing the amount and decreasing the level of activity of a Myc protein.
  • a disclosed method of modulating the amount and activity of a Myc protein may include co-administering a compound described herein, or a pharmaceutically acceptable salt thereof, and a therapeutically effective amount of a second agent, e.g., therapeutic agent.
  • a second agent e.g., therapeutic agent.
  • EXAMPLES [00118] Below are examples of specific embodiments for carrying out the present disclosure. The examples are offered for illustrative purposes only, and are not intended to limit the scope of the present disclosure in any way. Efforts have been made to ensure accuracy with respect to numbers used (i.e., amounts, temperatures, etc.), but some experimental error and deviation should be allowed for.
  • UV detection was afforded using an Acquity UPLC PDA detector (scanning from 210 to 400 nm), whilst mass detection was achieved using aa Acquity QDa detector (mass scanning from 100–1250 Da; positive and negative modes simultaneously).
  • a Waters Acquity UPLC BEH C18 column (2.1 ⁇ 50 mm, 1.7 mm) was used to separate the analytes.
  • Samples were prepared by dissolution (with or without sonication) into 1 mL of 50% (v/v) MeCN in water. The resulting solutions were then filtered through a 0.2 mm syringe filter before submitting for analysis. All of the solvents, including formic acid and 36% ammonia solution, were purchased as the HPLC grade.
  • amine B1 e.g., amines disclosed herein
  • a base e.g., N,N-diisopropylethylamine
  • amine B1 may comprise a protecting group (e.g., tert- butyloxycarbonyl (Boc), benzyl carbamate (Cbz)).
  • amine B1 comprises a protecting group (e.g., tert-butyloxycarbonyl (Boc), benzyl carbamate (Cbz))
  • the intermediate produced from the reaction thereof with intermediate A1 in the presence of a base may further be reacted to deprotect the protecting group (e.g., in the presence of reducing agents such as hydrogen (e.g., with Pd/C as catalyst) or LiAlH 4 or acid such as TFA or HBr) to produce a compound of Formula I.
  • reducing agents such as hydrogen (e.g., with Pd/C as catalyst) or LiAlH 4 or acid such as TFA or HBr)
  • intermediate A1 is prepared according to Scheme 2.
  • Example 1 Synthesis of [2-[4-(4,5,6,7-Tetrahydropyrazolo[1,5-a]pyridin-2- ylamino)pyrimidin-2-yl]-2-azabicyclo[2.2.1]heptan-4-yl]methanol (Compound 1) N-(2-Chloropyrimidin-4-yl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyridin-2-amine [00124] To 4H,5H,6H,7H-tetrahydropyrazolo[1,5-a]pyridin-2-amine (83 mg, 0.60 mmol) in DMSO (4 mL) was added N,N-diisopropylethylamine (0.32 mL, 1.8 mmol) then 2,4- dichloropyrimidine (90 mg, 0.60 mmol) and the reaction mixture heated at 60 °C for 18 hours.
  • reaction mixture was cooled to 0 °C and methyl iodide (0.17 mL, 2.67 mmol) was added dropwise, then the reaction mixture was allowed to warm to room temperature and was stirred for 20 hours.
  • the reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2 x 30 mL), dried (Na 2 SO 4 ) and concentrated under reduced pressure. The residue was purified by reverse phase basic prepHPLC to afford the title compound as an oil (105 mg, 0.40 mmol, 13%).
  • NAL-008WO [2-[4-[(5-Cyclopropyl-2-methyl-pyrazol-3-yl)-methyl-amino]pyrimidin-2-yl]-2- azabicyclo[2.2.1]heptan-4-yl]methanol
  • 2-azabicyclo[2.2.1]heptan-4-ylmethanol 61 mg, 0.48 mmol
  • 2- chloro-N-(5-cyclopropyl-2-methyl-pyrazol-3-yl)-N-methyl-pyrimidin-4-amine 105 mg, 0.398 mmol
  • 1-butanol 2.5 mL
  • DIPEA N,N-diisopropylethylamine
  • reaction mixture was heated to reflux and stirred for 16 hours.
  • the reaction mixture was allowed to cool to room temperature then diluted with EtOAc (10 mL) and washed with water (10 mL) and brine (10 mL), the organics separated, dried (Na 2 SO 4 ) and concentrated under reduced pressure.
  • the residue was purified on silica by automated flash column chromatography (Teledyne ISCO, 12 g cartridge) eluting with MeOH (0% to 3%) in CH 2 Cl 2 to give the title compound as a solid (132 mg, 0.37 mmol, 91%).
  • the reaction mixture was diluted with EtOAc (25 mL), and washed consecutively with water (5 ⁇ 20 mL) and saturated aqueous brine solution (20 mL).
  • the organic phase was dried over Na 2 SO 4 , filtered and the volatiles removed under reduced IPTS/128670292.1 Attorney Docket No. NAL-008WO pressure to afford a yellow oil, which was purified by column chromatography over silica (12 g cartridge) eluting with a gradient of EtOAc (20% to 90%) in iso-hexane to afford the title compound as a powder (47 mg, 0.167 mmol, 12%).
  • NAL-008WO 2-Chloro-N-(5-cyclopropyl-4-methyl-1H-pyrazol-3-yl)pyrimidin-4-amine [00142] To a solution of 2,4-dichloropyrimidine (100 mg, 0.67 mmol) and 3-cyclopropyl-4- methyl-1H-pyrazol-5-amine (92 mg, 0.67 mmol) in DMSO (4 mL) was added N,N- diisopropylethylamine (0.35 mL, 2.0 mmol), and the solution was heated to 60 °C and stirred for 18 hours. The reaction mixture was diluted with EtOAc (20 mL), and the organic phase was washed with water (20 mL).
  • NAL-008WO Example 5 Synthesis of [2-[4-[(5-cyclopropylpyrazin-2-yl)amino]pyrimidin-2-yl]-2- azabicyclo[2.2.1]heptan-4-yl]methanol (Compound 5) N-(5-Cyclopropylpyrazin-2-yl)-2-methylsulfanyl-pyrimidin-4-amine [00148] A solution of 2-methylthio-4-chloropyrimidine (70 ⁇ L, 0.62 mmol), 5- cyclopropylpyrazin-2-amine (101 mg, 0.75 mmol) in 1,4-dioxane (5 mL) was sparged with nitrogen for 10 min.
  • Example 6 Synthesis of [2-[4-[(5-Cyclopropylthiazol-2-yl)amino]pyrimidin-2-yl]-2- azabicyclo[2.2.1]heptan-4-yl]methanol (Compound 6) IPTS/128670292.1 Attorney Docket No. NAL-008WO [00157] To a suspension of 2,4-dichloropyrimidine (159 mg, 1.07 mmol) and 5-cyclopropyl- thiazol-2-ylamine (100 mg, 0.71 mmol) in IPA (3 mL) was added N,N-diisopropylethylamine (0.25 mL, 1.43 mmol) and it was heated to reflux for 24 hours.
  • NAL-008WO Example 7 Degradation of MycC/MycN Protein [00163]
  • L363 cells for L363 cells (suspension), 1E6 cells are plated into each well of a 6 well plate.
  • SK-N-BE(2) cells for SK-N-BE(2) cells (adherent), 5E5 cells are plated into each well of a 6 well dish. Cells are cultured for 24 hrs then treated with exemplary compounds at 0.1, 0.25, 0.5, 1.0, 3.0 and 6.0 mM final assay concentrations plus DMSO control. All compounds are diluted to 10 mM in DMSO.
  • Cells are treated with the compound for 24 hrs, then for both cell types, media containing cells are removed from wells into a 15ml centrifuge tube, and remaining adherent SK-N-BE(2) cells are also scraped from the wells into the appropriate tubes. Tubes are centrifuged, cells are washed with PBS then re-centrifuged to pellet cells. A RIPA buffer cocktail are added to the cells on ice for 5 mins. Cell lysates are clarified by centrifugation and stored at -80 degrees until required. BCA assay is performed on each lysate to determine the protein concentration.
  • lysates and antibodies are used at a number of concentrations (Lysates: 2, 1, 0.2mg/ml; Antibodies: 1 in 50, 1 in 200 dilution). Once an appropriate lysate concentration and antibody concentration is determined, samples are screened LQ ⁇ WKH ⁇ -(66 ⁇ WHFKQRORJ ⁇ 3URWHLQ ⁇ 6LPSOH ⁇ 6DQ ⁇ -RVH ⁇ &$ ⁇ - https://www.proteinsimple.com/jess.html).
  • Target protein antibodies are detected in the chemi-luminescence channel and loading controls (tubulin and GAPDH) are detected using a Near Infra Red (NIR) labeled secondary antibody.
  • NIR Near Infra Red
  • Cell proliferation/viability measures [00166] For SK-N-EB2 adherent cells, 5E5 cells in 1.9mls media are plated into 6 well dishes and incubated for 24hrs. Exemplary compounds are added (100ul, 1 in 20 dilution in media) to each well (final assay concentration 6, 3, 1 and 0.5mM) together with DMSO control wells and incubated for 24hrs.
  • Cells are scrapped off the plate, centrifuged, washed with PBS, centrifuged, then a RIPA buffer cocktail added to the cells (100ul), centrifuged and stored at -80 for later analysis.
  • 1E6 cells are plated into 24 well dishes (950ul media) and incubated for 24hrs.
  • Exemplary compounds are added (50ul, 1 in 20 dilution in media) to each well (final assay concentration 6, 3, 1 and 0.5 mM) together with DMSO control wells and incubated for 24hrs.
  • both SK-N-EB2 or L363 cells are run in 384 well format.
  • SK-N-EB2 cells 5000 cells per well (in 30ul media) are incubated for 24hrs prior to the addition of compounds (10ul, 1 in 4 dilution, 10mM top final concentration, 1 in 2 dilutions) for 24hrs.
  • L363 cells 2000 cells per well (30ul media) are incubated for 24hrs prior to the addition of compounds (10ul, 10mM 1 in 2 dilutions) for 24hrs.
  • Promega Cell Titer GLO is added according to the manufacturer’s instructions and the plates are read immediately in the luminometer. Table 1.

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Abstract

Disclosed herein are compounds and compositions having potency in the modulation of Myc family proteins. Such compounds and compositions can be used in the treatment of proliferative diseases, such as cancer, or in the treatment of disease where modulation of Myc family proteins is desired. Also disclosed herein are methods of using said compounds and compositions.

Description

Attorney Docket No. NAL-008WO MODULATORS OF MYC FAMILY PROTO-ONCOGENE PROTEIN CROSS-REFERENCE TO RELATED APPLICATIONS
Figure imgf000002_0001
[0003] For example, amplification and overexpression of N-Myc can lead to tumorigenesis.
Figure imgf000002_0002
[0004] C-Myc can also be constitutively expressed in various cancers such as cervix, colon,
Figure imgf000002_0003
outcomes. However, strategies for direct modulation of Myc proteins remain elusive, as the Myc proteins are not easily targeted. [0006] Therefore, an ongoing need exists for small-molecule therapeutic modulators of Myc proteins for the treatment of various ailments, diseases and disorders, e.g., cancer. IPTS/128670292.1 Attorney Docket No. NAL-008WO SUMMARY [0007] The present disclosure provides compounds and compositions that are useful as Myc protein modulators, and methods of using the same. Furthermore, the present disclosure contemplates using disclosed compounds and compositions as direct modulators of Myc proteins in the treatment of proliferative disease, such as cancer, or in the treatment of diseases where modulation of Myc family proteins is desired. [0008] For example, provided herein is a compound represented by Formula I:
Figure imgf000003_0001
(Formula I) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: W is selected from the group consisting of N, C-H, and C-F; Y is selected from the group consisting of NH, N-CH3, O, S, CH2, CF2, CH(CH3),
Figure imgf000003_0002
ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C1-C4 alkyl), provided that ring X is not
Figure imgf000003_0003
wherein * indicates attachment to Y and ** indicates attachment to R1 and RH is H or C1-C4 alkyl; ring Z is a 4-10 membered N-bound heterocyclic, wherein Z may optionally be substituted by one or two substituents each independently selected from the group consisting of halo, hydroxyl, C1-C4 alkyl (optionally substituted by one, two or three halogens), oxo, C1-C4 alkoxy, and cyano; L1 is bond or C1-C6 alkylene (optionally substituted by one, two or three R4); R3 is OR’; IPTS/128670292.1 Attorney Docket No. NAL-008WO R4 is each independently selected from the group consisting of halogen and C1-C6 alkyl (optionally substituted by one, two or three halogens), or two R4 together with the carbon to which the R4 are attached form a C3-C5 carbocyclyl; R’ is each independently selected from the group consisting of H and C1-C6 alkyl (optionally substituted by one, two or three halogens); R1 is selected from the group consisting of C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, heteroaryl, cyano, halo, C1-C4alkyl, and H; wherein C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, or heteroaryl may be substituted by one, two or three substituents each independently selected from halo and C1-C4alkyl (optionally substituted by one, two or three halogens); and R2 is selected from the group consisting of H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O- methyl, -O-ethyl, C3-C7 cycloalkyl, and heterocyclyl. [0009] Also provided herein is a compound represented by Formula II:
Figure imgf000004_0001
(Formula II) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: W is selected from the group consisting of N, C-H, and C-F; Y is selected from the group consisting of NH, N-CH3, O, S, CH2, CF2, CH(CH3),
Figure imgf000004_0002
ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C1-C4 alkyl), provided that ring X is not
Figure imgf000004_0003
wherein * indicates attachment to Y and ** indicates attachment to R1 and RH is H or C1-C4 alkyl; IPTS/128670292.1 Attorney Docket No. NAL-008WO ring Z is selected from the group consisting of 4, 5, or 7-10-membered N-bound monocyclic heterocyclyl, 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic heterocycle, and 6-10 membered bridged heterocycle, wherein Z may optionally be substituted by one or two substituents each independently selected from the group consisting of halo, hydroxyl, C1-C4 alkyl (optionally substituted by one, two or three halogens), oxo, C1-C4 alkoxy, and cyano; L1 is bond or C1-C6 alkylene (optionally substituted by one, two or three R4); R3 is OR’; R4 is each independently selected from the group consisting of halogen and C1-C6 alkyl (optionally substituted by one, two or three halogens), or two R4 together with the carbon to which the R4 are attached form a C3-C5 carbocyclyl; R’ is each independently selected from the group consisting of H and C1-C6 alkyl (optionally substituted by one, two or three halogens); R1 is selected from the group consisting of C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, heteroaryl, cyano, halo, C1-C4alkyl, and H; wherein C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, or heteroaryl may be substituted by one, two or three substituents each independently selected from halo and C1-C4alkyl (optionally substituted by one, two or three halogens); and R2 is selected from the group consisting of H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O- methyl, -O-ethyl, C3-C7 cycloalkyl, and heterocyclyl. [0010] Pharmaceutical compositions comprising a disclosed compound or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, as described herein, for example a disclosed pharmaceutical composition may include least one or more pharmaceutically acceptable carriers, diluents, stabilizers, excipients, dispersing agents, suspending agents, and/or thickening agents. The present disclosure also provides a method of manufacturing of the compounds described herein, or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof. [0011] A method of modulating the amount and activity of a Myc family protein (i.e., C- Myc, N-Myc, L-Myc, or human Myc) is also provided, for example, an activity of a Myc family IPTS/128670292.1 Attorney Docket No. NAL-008WO protein may be modulated in a cell by contacting a cell with an effective amount of a compound as described herein, or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof. [0012] The present disclosure also provides a method of treating a Myc family protein associated disease in a subject in need thereof, the method comprising administering a therapeutically effective amount of a compound described herein, or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, including embodiments in any examples, tables, or figures. In some embodiments, the subject is a human subject and the disease is a proliferative disease, such as cancer. DETAILED DESCRIPTION Definitions [0013] Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure pertains. [0014] It is understood that the definitions provided herein are not intended to be mutually exclusive. Accordingly, some chemical moieties may fall within the definition of more than one term. [0015] The term “alkoxy” as used herein refers to a straight or branched alkyl group attached to oxygen (alkyl-O-). Exemplary alkoxy groups include, but are not limited to, alkoxy groups of 1-6 or 2-6 carbon atoms, referred to herein as C1-6alkoxy, and C2-6alkoxy, respectively. Exemplary alkoxy groups include, but are not limited to methoxy, ethoxy, isopropoxy, n-butoxy, tert-butoxy, sec-butoxy, n-pentoxy, n-hexoxy, 1,2-dimethylbutoxy, etc. [0016] The term “alkyl” as used herein refers to a saturated straight or branched hydrocarbon. Exemplary alkyl groups include, but are not limited to, straight or branched hydrocarbons of 1-6, 1-4, or 1-3 carbon atoms, referred to herein as C1-6alkyl, C1-4alkyl, and C1- 3alkyl, respectively. Exemplary alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, 2-methyl-1-butyl, 3-methyl-2-butyl, 2-methyl-1-pentyl, 3-methyl-1-pentyl, 4- methyl-1-pentyl, 2-methyl-2-pentyl, 3-methyl-2-pentyl, 4-methyl-2-pentyl, 2,2-dimethyl-1-butyl, 3,3-dimethyl-1-butyl, 2-ethyl-1-butyl, butyl, isobutyl, t-butyl, pentyl, isopentyl, neopentyl, hexyl, etc. 5 IPTS/128670292.1 Attorney Docket No. NAL-008WO [0017] As used herein, the term “alkylene” refers to a di-radical alkyl group. Examples include, methylene (–CH2–), ethylene (–CH2CH2–), propylene (–CH2CH2CH2–), 2- methylpropylene (–CH2–CH(CH3) –CH2–), hexylene (–(CH2)6–) and the like. [0018] The term “alkenyl” as used herein refers to an unsaturated straight or branched hydrocarbon having at least one carbon-carbon double bond. Exemplary alkenyl groups include, but are not limited to, a straight or branched group of 2-6 or 3-4 carbon atoms, referred to herein as C2-6alkenyl, and C3-4alkenyl, respectively. Exemplary alkenyl groups include, but are not limited to, vinyl, allyl, butenyl, pentenyl, etc. [0019] The term “alkynyl” as used herein refers to an unsaturated straight or branched hydrocarbon having at least one carbon-carbon triple bond. Exemplary alkynyl groups include, but are not limited to, straight or branched groups of 2-6, or 3-6 carbon atoms, referred to herein as C2-6alkynyl, and C3-6alkynyl, respectively. Exemplary alkynyl groups include, but are not limited to, ethynyl, propynyl, butynyl, pentynyl, hexynyl, methylpropynyl, etc. [0020] As used herein, the terms “alkenylene,” “alkynylene,” “arylene,” “arylalkylene,” and “alkylarylene” refer to di-radical alkenyl, alkynyl, aryl, arylalkyl, and alkylaryl groups, respectively. [0021] As used herein, the term “azido” refers to group –N3. [0022] As used herein, the term “carboxyl,” “carboxy” or “carboxylate” refers to –CO2H or salts thereof. [0023] As used herein, the term “carbamoyl” refers to the group NH2CO–. [0024] The terms “cycloalkyl” or a “carbocyclic group” as used herein refers to a saturated or partially unsaturated hydrocarbon group of, for example, 3-10, 3-6, or 4-6 carbons, referred to herein as C3-10cycloalkyl , or C4-6cycloalkyl, respectively, and which may be monocyclic or bicyclic ring structures, e.g.4-9 or 4-6 membered saturated ring structures, including bridged, fused or spirocyclic rings. Exemplary cycloalkyl groups include, but are not limited to, adamantanyl, cyclohexyl, cyclopentyl, cyclopentenyl, cyclobutyl, cyclopropyl, and indanyl. [0025] As used herein, the groups
Figure imgf000007_0001
are
Figure imgf000007_0002
interchangeably and refer to a cyclohexyl group. [0026] As used herein, the term “cyano” and “carbonitrile” refer to the group –CN. IPTS/128670292.1 Attorney Docket No. NAL-008WO [0027] As used herein, the term “formyl” refers to the group –C(O)H. [0028] As used herein, the term “guanidino” refers to the group –NHC(=NH)NH2. [0029] As used herein, the terms “halo” and “halogen” are used in the conventional sense to refer to a chloro, bromo, fluoro or iodo substituent. [0030] As used herein, the terms “hydroxy” and “hydroxyl” refer to the group -OH. [0031] The terms “heteroaryl” or “heteroaromatic group” as used herein refers to a monocyclic aromatic 5-6 membered ring system containing one or more heteroatoms, for example one to three heteroatoms, such as nitrogen, oxygen, and sulfur. Where possible, said heteroaryl ring may be linked to the adjacent radical though carbon or nitrogen. Examples of heteroaryl rings include but are not limited to furan, thiophene, pyrrole, thiazole, oxazole, isothiazole, isoxazole, imidazole, pyrazole, triazole, pyridine or pyrimidine etc. [0032] The terms “heterocyclyl” or “heterocyclic group” are art-recognized and refer to e.g. saturated or partially unsaturated, 4-10 membered monocyclic or bicyclic ring structures, or e.g. 4-9 or 4-6 membered saturated ring structures, including bridged, fused or spirocyclic rings, and whose ring structures include one to three heteroatoms, such as nitrogen, oxygen, and sulfur. Where possible, heterocyclyl rings may be linked to the adjacent radical through carbon or nitrogen. Examples of heterocyclyl groups include, but are not limited to, pyrrolidine, piperidine, morpholine, thiomorpholine, piperazine, oxetane, azetidine, tetrahydrofuran or dihydrofuran etc. [0033] As used herein, the term “nitro” refers to the group –NO2. [0034] As used herein, the term “oxo” refers to the group (=O) or (O). [0035] As used herein, the term “isomers” refers to compounds comprising the same numbers and types of atoms or components, but with different structural arrangement and connectivity of the atoms. [0036] As used herein, the term “tautomer” refers to one of two or more structural isomers which readily convert from one isomeric form to another and which exist in equilibrium. [0037] The compounds of the disclosure may contain one or more chiral centers and, therefore, exist as stereoisomers. The term “stereoisomers” when used herein consist of all enantiomers or diastereomers. These compounds may be designated by the symbols “(+),” “
Figure imgf000008_0001
“R” or “S,” depending on the configuration of substituents around the stereogenic carbon atom, but the skilled artisan will recognize that a structure may denote a chiral center implicitly. The IPTS/128670292.1 Attorney Docket No. NAL-008WO present disclosure encompasses various stereoisomers of these compounds and mixtures thereof. Mixtures of enantiomers or diastereomers may be designated “(±)” in nomenclature, but the skilled artisan will recognize that a structure may denote a chiral center implicitly. [0038] The compounds of the disclosure may contain one or more double bonds and, therefore, exist as geometric isomers resulting from the arrangement of substituents around a carbon-carbon double bond. The symbol denotes a bond that may be a single, double or triple bond as described herein. Substituents around a carbon-carbon double bond are designated as being in the “Z”
Figure imgf000009_0001
configuration wherein the terms “Z” and “E” are used in accordance with IUPAC standards. Unless otherwise specified, structures depicting double bonds encompass both the “E” and “Z” isomers. Substituents around a carbon-carbon double bond alternatively can be referred to as “cis” or “trans,” where “cis” represents substituents on the same side of the double bond and “trans” represents substituents on opposite sides of the double bond. [0039] Compounds of the disclosure may contain a carbocyclic or heterocyclic ring and therefore, exist as geometric isomers resulting from the arrangement of substituents around the ring. Substituents around a carbocyclic or heterocyclic ring may be referred to as “cis” or “trans”, where the term “cis” represents substituents on the same side of the plane of the ring and the term “trans” represents substituents on opposite sides of the plane of the ring. Mixtures of compounds wherein the substituents are disposed on both the same and opposite sides of plane of the ring are designated “cis/trans.” [0040] Individual enantiomers and diastereomers of compounds of the present disclosure can be prepared synthetically from commercially available starting materials that contain asymmetric or stereogenic centers, or by preparation of racemic mixtures followed by resolution methods well known to those of ordinary skill in the art. These methods of resolution are exemplified by (1) attachment of a mixture of enantiomers to a chiral auxiliary, separation of the resulting mixture of diastereomers by recrystallization or chromatography and liberation of the optically pure product from the auxiliary, (2) salt formation employing an optically active resolving agent, (3) direct separation of the mixture of optical enantiomers on chiral liquid chromatographic columns or (4) kinetic resolution using stereoselective chemical or enzymatic reagents. Racemic mixtures can also be resolved into their component enantiomers by well-known methods, such as chiral-phase liquid chromatography or crystallizing the compound in a chiral solvent. IPTS/128670292.1 Attorney Docket No. NAL-008WO Stereoselective syntheses, a chemical or enzymatic reaction in which a single reactant forms an unequal mixture of stereoisomers during the creation of a new stereocenter or during the transformation of a pre-existing one, are well known in the art. Stereoselective syntheses encompass both enantio- and diastereoselective transformations, and may involve the use of chiral auxiliaries. For examples, see Carreira and Kvaerno, Classics in Stereoselective Synthesis, Wiley-VCH: Weinheim, 2009. [0041] The compounds disclosed herein can exist in solvated as well as unsolvated forms with pharmaceutically acceptable solvents such as water, ethanol, and the like, and it is intended that the present disclosure embrace both solvated and unsolvated forms. In one embodiment, a disclosed compound is amorphous. In one embodiment, a disclosed compound is a single polymorph. In another embodiment, a disclosed compound is a mixture of polymorphs. In another embodiment, a disclosed compound is in a crystalline form. [0042] The present disclosure also embraces isotopically labeled compounds of the disclosure which are identical to those recited herein, except that one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature. Examples of isotopes that can be incorporated into compounds of the present disclosure include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, sulfur, fluorine and chlorine, such as 2H, 3H, 13C, 14C, 15N, 18O, 17O, 31P, 32P, 35S, 18F, and 36Cl, respectively. For example, a compound of the disclosure may have one or more H atom replaced with deuterium. [0043] Certain isotopically-labeled disclosed compounds
Figure imgf000010_0001
those labeled with 3H and 14C) are useful in compound and/or substrate tissue distribution assays. Tritiated
Figure imgf000010_0002
3H) and carbon-14 (i.e., 14C) isotopes are particularly preferred for their ease of preparation and detectability. Further, substitution with heavier isotopes such as deuterium (i.e., 2H) may afford certain therapeutic advantages resulting from greater metabolic stability (e.g., increased in vivo half-life or reduced dosage requirements) and hence may be preferred in some circumstances. Isotopically labeled compounds of the present disclosure can generally be prepared by following procedures analogous to those disclosed in the examples herein by substituting an isotopically labeled reagent for a non-isotopically labeled reagent [0044] As used herein, singular articles such as “a,” “an” and “the” and similar referents in the context of describing the elements are to be construed to cover both the singular and the IPTS/128670292.1 Attorney Docket No. NAL-008WO plural, unless otherwise indicated herein or clearly contradicted by context. Recitation of ranges of values herein are merely intended to serve as a shorthand method of referring individually to each separate value falling within the range, including the upper and lower bounds of the range, unless otherwise indicated herein, and each separate value is incorporated into the specification as if it were individually recited herein. All methods described herein can be performed in any suitable order unless otherwise indicated herein or otherwise clearly contradicted by context. The use of any and all examples, or exemplary language (i.e.,“such as”) provided herein, is intended merely to better illuminate the embodiments and does not pose a limitation on the scope of the claims unless otherwise stated. [0045] In some embodiments, where the use of the term "about" is before a quantitative value, the present disclosure also includes the specific quantitative value itself, unless specifically stated otherwise. As used herein, the term "about" refers to a ±10% variation from the nominal value unless otherwise indicated or inferred. Where a percentage is provided with respect to an amount of a component or material in a composition, the percentage should be understood to be a percentage based on weight, unless otherwise stated or understood from the context. [0046] Where a molecular weight is provided and not an absolute value, for example, of a polymer, then the molecular weight should be understood to be an average molecule weight, unless otherwise stated or understood from the context. [0047] It should be understood that the order of steps or order for performing certain actions is immaterial so long as the present disclosure remains operable. Moreover, two or more steps or actions can be conducted simultaneously. [0048] As used herein, a dash (“–”) that is not between two letters or symbols refers to a point of bonding or attachment for a substituent. For example, –NH2 is attached through the nitrogen atom. [0049] As used herein, the terms “active agent,” “drug,” “pharmacologically active agent” and “active pharmaceutical ingredient” are used interchangeably to refer to a compound or composition which, when administered to a subject, induces a desired pharmacologic or physiologic effect by local or systemic action or both. [0050] As used herein, the term “prodrug” refers to compounds that are transformed in vivo to provide a compound or pharmaceutically acceptable salt, hydrate or solvate of the compound IPTS/128670292.1 Attorney Docket No. NAL-008WO described herein. The transformation can occur by various mechanisms (i.e., esterase, amidase, phosphatase, oxidative and/or reductive metabolism) in various locations (i.e., in the intestinal lumen or upon transit into the intestine, blood, or liver). [0051] As used herein, the term “modulator” refers to a compound or composition that increases or decreases the level of a target or the function of a target, which may be, but is not limited to, a Myc family protein, such as c-Myc, N-Myc, L-Myc and human Myc. [0052] As used herein, the term “degrader” refers to a compound or composition that decreases the amount of a target or the activity of a target. In some embodiments, the target may be, but is not limited to, a Myc family protein comprising c-Myc, N-Myc, L-Myc and human Myc. [0053] As used herein, the term “degrading” refers to a method or process that decreases the amount of a target or the activity of a target. In some embodiments, the target may be, but is not limited to, a Myc family protein comprising c-Myc, N-Myc, L-Myc and human Myc. [0054] As used herein, the term “Myc family protein” refers to any one of the proteins c- Myc, N-Myc, or L-Myc as described herein. In some embodiments, a Myc protein is a c-Myc protein. In some embodiments, a Myc protein is a N-Myc protein. In some embodiments, a Myc protein is a L-Myc protein. In some embodiments, a Myc protein is a human c-Myc protein. In some embodiments, a Myc protein is a human N-Myc protein. In some embodiments, a Myc protein is a human L-Myc protein. In some embodiments, a Myc family protein is a human Myc family protein. [0055] As used herein, the terms “N-Myc” and “MycN” can be used interchangeably and refer to the protein “V-Myc myelocytomatosis viral related oncogene, neuroblastoma derived” and include the wildtype and mutant forms of the protein. In some embodiments, MycN refers to the protein associated with one or more of database entries of Entrez Gene 4613, OMIM 164840, UniProt P04198, and RegSeq NP_005369. [0056] As used herein, the term “c-Myc” refers to the protein “V-Myc myelocytomatosis viral oncogene” and include the wildtype and mutant forms of the protein. In some embodiments, c-Myc refers to the protein associated with one or more of database entries of Entrez Gene 4609, OMIM 190080, UniProt P01106, and RegSeq NP_002458. [0057] As used herein, the term “L-Myc” refers to the protein “V-Myc myelocytomatosis viral oncogene homolog, lung carcinoma derived” and include the wildtype and mutant forms of IPTS/128670292.1 Attorney Docket No. NAL-008WO the protein. In some embodiments, L-Myc refers to the protein associated with one or more of database entries of Entrez Gene 4610, OMIM 164850, UniProt P12524, and RegSeq NP_001028253. [0058] The terms “individual,” “host,” “subject,” and “patient” are used interchangeably herein, and refer to an animal, including, but not limited to, human and non-human primates, including simians and humans; rodents, including rats and mice; bovines; equines; ovines; felines; canines; and the like. "Mammal" means a member or members of any mammalian species, and includes, by way of example, canines, felines, equines, bovines, ovines, rodentia, etc. and primates, i.e., non-human primates, and humans. Non-human animal models, i.e., mammals, non-human primates, murines, lagomorpha, etc. may be used for experimental investigations. [0059] As used herein, the terms “treating,” “treatment,” and the like, refer to obtaining a desired pharmacologic and/or physiologic effect, such as reduction of tumor burden. The effect may be prophylactic in terms of completely or partially preventing a disease or symptom thereof and/or may be therapeutic in terms of a partial or complete cure for a disease and/or adverse effect attributable to the disease. “Treatment,” as used herein, covers any treatment of a disease in a mammal, particularly in a human and includes: (a) preventing the disease or a symptom of a disease from occurring in a subject which may be predisposed to the disease but has not yet been diagnosed as having it (i.e., including diseases that may be associated with or caused by a primary disease); (b) inhibiting the disease, i.e., arresting its development; and (c) relieving the disease, i.e., causing regression of the disease (i.e., reduction in of tumor burden). In some embodiments, certain methods described herein treat cancer associated with the signaling pathway of a Myc family protein, such as c-Myc, N-Myc, L-Myc or human Myc. [0060] As used herein, the term “pharmaceutically acceptable salt” refers to a salt which is acceptable for administration to a subject. It is understood that such salts, with counter ions, will have acceptable mammalian safety for a given dosage regime. Such salts can also be derived from pharmaceutically acceptable inorganic or organic bases and from pharmaceutically acceptable inorganic or organic acids, and may comprise organic and inorganic counter ions. The neutral forms of the compounds described herein may be converted to the corresponding salt forms by contacting the compound with a base or acid and isolating the resulting salts. IPTS/128670292.1 Attorney Docket No. NAL-008WO [0061] Examples of salts include, but are not limited to: acetate, adipate, alginate, aspartate, benzoate, benzenesulfonate, bisulfate, butyrate, citrate, camphorate, camphorsulfonate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, fumarate, flucoheptanoate, glycerophosphate, hemisulfate, heptanoate, hexanoate, hydrochloride, hydrobromide, hydroiodide, 2-hydroxyethanesulfonate, lactate, maleate, methanesulfonate, 2- naphthalenesulfonate, nicotinate, oxalate, palmoate, pectinate, persulfate, phenylpropionate, picrate, pivalate, propionate, succinate, tartrate, thiocyanate, tosylate, undecanoate, and the like. [0062] Other examples of salts include anions of the compounds of the present disclosure compounded with a suitable cation such as N+, NH4 +, and NW4 + (where W can be a C1-C8 alkyl group), and the like. For therapeutic use, salts of the compounds of the present disclosure can be pharmaceutically acceptable. However, salts of acids and bases that are non-pharmaceutically acceptable may also find use, for example, in the preparation or purification of a pharmaceutically acceptable compound. [0063] Compounds included in the present compositions that are basic in nature are capable of forming a wide variety of salts with various inorganic and organic acids. The acids that can be used to prepare pharmaceutically acceptable acid addition salts of such basic compounds are those that form non-toxic acid addition salts, i.e., salts containing pharmacologically acceptable anions, including but not limited to, malate, oxalate, chloride, bromide, iodide, nitrate, sulfate, bisulfate, phosphate, acid phosphate, isonicotinate, acetate, lactate, salicylate, citrate, tartrate, oleate, tannate, pantothenate, bitartrate, ascorbate, succinate, maleate, gentisinate, fumarate, gluconate, glucaronate, saccharate, formate, benzoate, glutamate, methanesulfonate, ethanesulfonate, benzenesulfonate, p-toluenesulfonate and pamoate (i.e., 1,1'-methylene-bis-(2- hydroxy-3-naphthoate )) salts. [0064] Compounds included in the present compositions that are acidic in nature are capable of forming base salts with various pharmacologically acceptable cations. Examples of such salts include alkali metal or alkaline earth metal salts and, particularly, calcium, magnesium, sodium, lithium, zinc, potassium, and iron salts. [0065] Compounds included in the present compositions that include a basic or acidic moiety can also form pharmaceutically acceptable salts with various amino acids. The compounds of the disclosure can contain both acidic and basic groups; for example, one amino and one carboxylic IPTS/128670292.1 Attorney Docket No. NAL-008WO acid group. In such a case, the compound can exist as an acid addition salt, a zwitterion, or a base salt. [0066] As used herein, the terms “determining,” “measuring,” “assessing,” and “assaying” are used interchangeably and include both quantitative and qualitative determinations. [0067] As used herein, the phrase “signaling pathway” refers to a series of interactions between cellular components, both intracellular and extracellular, that conveys a change to one or more other components in a living organism, which may cause a subsequent change to additional component. Optionally, the changes conveyed by one signaling pathway may propagate to other signaling pathway components. Examples of cellular components include, but are not limited to, proteins, nucleic acids, peptides, lipids and small molecules. [0068] As used herein, the terms “effective amount” and “therapeutically effective amount” are used interchangeably and refer to the amount of a compound that, when administered to a mammal or other subject for treating a disease, condition, or disorder, is sufficient to affect such treatment for the disease, condition, or disorder. The “effective amount” or "therapeutically effective amount" will vary depending on the compound, the disease and its severity and the age, weight, etc., of the subject to be treated. [0069] As used herein, the terms “pharmaceutically acceptable excipient,” “pharmaceutically acceptable diluent,” “pharmaceutically acceptable carrier,” and “pharmaceutically acceptable adjuvant” refer to an excipient, diluent, carrier, and adjuvant that are useful in preparing a pharmaceutical composition that are generally safe, non-toxic and neither biologically nor otherwise undesirable, and include an excipient, diluent, carrier, and adjuvant that are acceptable for veterinary use as well as human pharmaceutical use. The phrase “a pharmaceutically acceptable excipient, diluent, carrier and adjuvant” as used in the specification and claims includes both one and more than one such excipient, diluent, carrier, and adjuvant. [0070] As used herein, the term “pharmaceutical composition” is meant to encompass a composition suitable for administration to a subject, such as a mammal, especially a human. In general a “pharmaceutical composition” is sterile, and free of contaminants that are capable of eliciting an undesirable response within the subject (i.e., the compound(s) in the pharmaceutical composition is pharmaceutical grade). Pharmaceutical compositions can be designed for administration to subjects or patients in need thereof via a number of different routes of IPTS/128670292.1 Attorney Docket No. NAL-008WO administration including oral, buccal, rectal, parenteral, intraperitoneal, intradermal, intracheal, intramuscular, subcutaneous, and the like. [0071] Generally, reference to or depiction of a certain element such as hydrogen or H is meant to include all isotopes of that element. For example, if an R group is defined to include hydrogen or H, it also includes deuterium and tritium. Compounds comprising radioisotopes such as tritium, 14C, 32P and 35S are thus within the scope of the present technology. Procedures for inserting such labels into the compounds of the present technology will be readily apparent to those skilled in the art based on the disclosure herein. [0072] Unless the specific stereochemistry is expressly indicated, all chiral, diastereomeric, and racemic forms of a compound are intended. Thus, compounds described herein include enriched or resolved optical isomers at any or all asymmetric atoms as are apparent from the depictions. Racemic mixtures of (R)-enantiomer and (S)-enantiomer, and enantio-enriched stereomeric mixtures comprising of (R)- and (S)-enantiomers, as well as the individual optical isomers can be isolated or synthesized so as to be substantially free of their enantiomeric or diastereomeric partners, and these stereoisomers are all within the scope of the present technology. [0073] The compounds described herein may exist as solvates, especially hydrates, and unless otherwise specified, all such solvates and hydrates are intended. Hydrates may form during manufacture of the compounds or compositions comprising the compounds, or hydrates may form over time due to the hygroscopic nature of the compounds. Compounds of the present technology may exist as organic solvates as well, including DMF, ether, and alcohol solvates, among others. The identification and preparation of any particular solvate is within the skill of the ordinary artisan of synthetic organic or medicinal chemistry. [0074] As described herein, the text refers to various embodiments of the present compounds, compositions, and methods. The various embodiments described are meant to provide a variety of illustrative examples and should not be construed as descriptions of alternative species. Rather, it should be noted that the descriptions of various embodiments provided herein may be of overlapping scope. The embodiments discussed herein are merely illustrative and are not meant to limit the scope of the present technology. Compounds IPTS/128670292.1 Attorney Docket No. NAL-008WO [0075] The disclosure is generally directed to compounds that modulate (e.g., degrade) MycN and/or MycC, and may therefore have significant antineoplastic properties. The disclosed compounds and pharmaceutical compositions thereof find use in a variety of applications in which the modulation of the amount and activity of a Myc protein is desired, including use as potent antineoplastic agents. [0076] Thus, provided herein, in part, is a compound of Formula I:
Figure imgf000017_0001
(Formula I) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: W is selected from the group consisting of N, C-H, and C-F; Y is selected from the group consisting of NH, N-CH3, O, S, CH2, CF2, CH(CH3),
Figure imgf000017_0002
ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C1-C4 alkyl), provided that ring X is not
Figure imgf000017_0003
wherein * indicates attachment to Y and ** indicates attachment to R1 and RH is H or C1-C4 alkyl; ring Z is a 4-10 membered N-bound heterocyclic, wherein Z may optionally be substituted by one or two substituents each independently selected from the group consisting of halo, hydroxyl, C1-C4 alkyl (optionally substituted by one, two or three halogens), oxo, C1-C4 alkoxy, and cyano; L1 is bond or C1-C6 alkylene (optionally substituted by one, two or three R4); R3 is OR’; IPTS/128670292.1 Attorney Docket No. NAL-008WO R4 is each independently selected from the group consisting of halogen and C1-C6 alkyl (optionally substituted by one, two or three halogens), or two R4 together with the carbon to which the R4 are attached form a C3-C5 carbocyclyl; R’ is each independently selected from the group consisting of H and C1-C6 alkyl (optionally substituted by one, two or three halogens); R1 is selected from the group consisting of C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, heteroaryl, cyano, halo, C1-C4alkyl, and H; wherein C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, or heteroaryl may be substituted by one, two or three substituents each independently selected from halo and C1-C4alkyl (optionally substituted by one, two or three halogens); and R2 is selected from the group consisting of H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O- methyl, -O-ethyl, C3-C7 cycloalkyl, and heterocyclyl. [0077] In some embodiments, Y is NH, N-CH3, O, S, CH2, CF2, CH(CH3), or C(CH3)2,
Figure imgf000018_0001
[0078] In some embodiments, W is C-H or C-F. In other embodiments, W is N. For example, W is N and Y is NH, and the compound is represented by the Formula Ia:
Figure imgf000018_0002
(Formula Ia) or a pharmaceutically acceptable salt, stereoisomer and/or N-oxide thereof. [0079] In some embodiments, R1 is a 5-6 membered heterocyclyl or C3-C6 cycloalkyl. In some embodiments, R1 is C3-C6 cycloalkyl optionally substituted by one or two substituents each independently selected from halo and C1-C4alkyl (optionally substituted by one, two or three halogens). In some embodiments, R1 is a C3-C6 cycloalkyl. For example, R1 is cyclopropyl, cyclobutyl, or cyclopentyl. In some embodiments, R1 is cyclopropyl or cyclopentyl. In some embodiments, R1 is cyclopropyl. In some embodiments, R1 is cyclopentyl. [0080] In some embodiments, ring Z is selected from the group consisting of 4-6 membered monocyclic heterocycle, 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic IPTS/128670292.1 Attorney Docket No. NAL-008WO heterocycle, and 6-10 membered bridged heterocycle. In some embodiments, ring Z is selected from the group consisting of 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic heterocyclyl, and 6-10 membered bridged heterocycle. In other embodiments, ring Z is selected from the group consisting of 4-6 membered monocyclic heterocycle and 6-10 membered bridged heterocycle. For example, ring Z is selected from the group consisting of:
Figure imgf000019_0001
. [0081] In some embodiments, ring Z is selected from the group consisting of:
Figure imgf000019_0002
. [0082] In some embodiments, ring Z is selected from the group consisting of:
Figure imgf000019_0003
. [0083] Exemplary contemplated compounds are represented by Formula Ib:
Figure imgf000019_0004
(Formula Ib) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof. [0084] Also contemplated herein are compounds represented by Formula Ic:
Figure imgf000019_0005
(Formula Ic) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof. [0085] In other embodiments, contemplated compounds are represented by Formula Id: IPTS/128670292.1 Attorney Docket No. NAL-008WO
Figure imgf000020_0001
(Formula Id) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof. [0086] In some embodiments, the compound is a compound of Formula Ie:
Figure imgf000020_0002
(Formula Ie) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein m is 0, 1, or 2. In some embodiments, m is 0 or 1. In some embodiments, m is 0. In some embodiments, m is 1. In some embodiments, m is 2. [0087] In some embodiments, ring X is selected from the group consisting of 6-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl containing at least one nitrogen (optionally substituted by C1-C4 alkyl). In some embodiments, ring X is selected from the group consisting of 6 membered monocyclic heterocyclyl (optionally substituted by oxo), 8- 10 membered bicyclic heterocyclyl, or 5-6 membered heteroaryl containing at least one nitrogen (optionally substituted by methyl). In some embodiments, ring X is selected from the group consisting of 6 membered monocyclic heterocyclyl substituted by oxo, 8-10 membered bicyclic heterocyclyl containing at least two nitrogens, or 5-6 membered heteroaryl containing at least one nitrogen (optionally substituted by methyl). [0088] In some embodiments, ring X is selected from the group consisting of: IPTS/128670292.1 Attorney Docket No. NAL-008WO
Figure imgf000021_0001
, wherein * indicates attachment to Y and ** indicates attachment to R1. [0089] In some embodiments, L1 is C1-C6 alkylene substituted by one or two R4. For example, L1 may be methylene substituted by one or two R4. In some embodiments, R4 is C1-C4 alkyl (optionally substituted by one, two or three halogens). For example, R4 may be methyl, ethyl, or propyl. In other embodiments, two R4s together with the carbon to which the R4 are attached form a C3-C4 carbocyclyl. For example, two R4s together with the carbon to which the R4 are attached may form a cyclopropyl. [0090] In some embodiments, R3 is selected from the group consisting of OH, O-methyl, O- ethyl, O-isopropyl, O-n-propyl, O-n-butyl, and O-tert-butyl. [0091] In some embodiments, R2 is H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O-methyl, or -O- ethyl. In some embodiments, R2 is H, F, or -O-methyl. In some embodiments, R2 is H or F. In some embodiments, R2 is H. [0092] Also provided herein is a compound of Formula II:
Figure imgf000021_0002
(Formula II) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: W is selected from the group consisting of N, C-H, and C-F; IPTS/128670292.1 Attorney Docket No. NAL-008WO Y is selected from the group consisting of NH, N-CH3, O, S, CH2, CF2, CH(CH3),
Figure imgf000022_0001
ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C1-C4 alkyl), provided that ring X is not
Figure imgf000022_0002
wherein * indicates attachment to Y and ** indicates attachment to R1 and RH is H or C1-C4 alkyl; ring Z is selected from the group consisting of 4, 5, or 7-10-membered N-bound monocyclic heterocyclyl, 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic heterocycle, and 6-10 membered bridged heterocycle, wherein Z may optionally be substituted by one or two substituents each independently selected from the group consisting of halo, hydroxyl, C1-C4 alkyl (optionally substituted by one, two or three halogens), oxo, C1-C4 alkoxy, and cyano; L1 is bond or C1-C6 alkylene (optionally substituted by one, two or three R4); R3 is OR’; R4 is each independently selected from the group consisting of halogen and C1-C6 alkyl (optionally substituted by one, two or three halogens), or two R4 together with the carbon to which the R4 are attached form a C3-C5 carbocyclyl; R’ is each independently selected from the group consisting of H and C1-C6 alkyl (optionally substituted by one, two or three halogens); R1 is selected from the group consisting of C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, heteroaryl, cyano, halo, C1-C4alkyl, and H; wherein C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, or heteroaryl may be substituted by one, two or three substituents each independently selected from halo and C1-C4alkyl (optionally substituted by one, two or three halogens); and R2 is selected from the group consisting of H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O- methyl, -O-ethyl, C3-C7 cycloalkyl, and heterocyclyl. [0093] In some embodiments, Y is NH, N-CH3, O, S, CH2, CF2, CH(CH3), or C(CH3)2,
Figure imgf000022_0003
IPTS/128670292.1 Attorney Docket No. NAL-008WO [0094] In some embodiments, W is C-H or C-F. In other embodiments, W is N. For example, when W is N and Y is NH, the compound may be represented by Formula IIa:
Figure imgf000023_0001
(Formula IIa) or a pharmaceutically acceptable salt, stereoisomer and/or N-oxide thereof. [0095] In some embodiments, R1 is a 5-6 membered heterocyclyl or C3-C6 cycloalkyl. In some embodiments, R1 is C3-C6 cycloalkyl optionally substituted by one or two substituents each independently selected from halo and C1-C4alkyl (optionally substituted by one, two or three halogens). In some embodiments, R1 is a C3-C6 cycloalkyl. For example, R1 is cyclopropyl, cyclobutyl, or cyclopentyl. In some embodiments, R1 is cyclopropyl or cyclopentyl. In some embodiments, R1 is cyclopropyl. In some embodiments, R1 is cyclopentyl. [0096] In some embodiments, ring Z is selected from the group consisting of 4 or 5 membered monocyclic heterocycle, 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic heterocycle, and 6-10 membered bridged heterocycle. In some embodiments, ring Z is selected from the group consisting of 4 or 5 membered monocyclic heterocycle and 6-10 membered bridged heterocycle. For example, ring Z may be selected from the group consisting of:
Figure imgf000023_0002
. [0097] In some embodiments, ring Z is selected from the group consisting of:
Figure imgf000023_0003
. [0098] In some embodiments, ring X is selected from the group consisting of 6-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl containing at least one nitrogen (optionally substituted by C1-C4 alkyl). In some embodiments, ring X is selected from the group consisting of 6 membered monocyclic heterocyclyl (optionally substituted by oxo), 8- 10 membered bicyclic heterocyclyl, or 5-6 membered heteroaryl containing at least one nitrogen IPTS/128670292.1 Attorney Docket No. NAL-008WO (optionally substituted by methyl). In some embodiments, ring X is selected from the group consisting of 6 membered monocyclic heterocyclyl substituted by oxo, 8-10 membered bicyclic heterocyclyl containing at least two nitrogens, or 5-6 membered heteroaryl containing at least one nitrogen (optionally substituted by methyl). [0099] In some embodiments, ring X is selected from the group consisting of:
Figure imgf000024_0001
, wherein * indicates attachment to Y and ** indicates attachment to R1. [00100] In some embodiments, L1 is C1-C6 alkylene substituted by one or two R4. For example, L1 may be methylene substituted by one or two R4. In some embodiments, R4 is C1-C4 alkyl (optionally substituted by one, two or three halogens). For example, R4 may be methyl, ethyl, or propyl. In other embodiments, two R4s together with the carbon to which the R4 are attached form a C3-C4 carbocyclyl. For example, two R4s together with the carbon to which the R4 are attached may form a cyclopropyl. [00101] In some embodiments, R3 is selected from the group consisting of OH, O-methyl, O- ethyl, O-isopropyl, O-n-propyl, O-n-butyl, and O-tert-butyl. [00102] In some embodiments, R2 is H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O-methyl, or -O- ethyl. In some embodiments, R2 is H, F, or O-methyl. In some embodiments, R2 is H or F. In some embodiments, R2 is H. [00103] In some embodiments, the compound is selected from the group consisting of: IPTS/128670292.1 Attorney Docket No. NAL-008WO
Figure imgf000025_0002
Figure imgf000025_0001
IPTS/128670292.1 Attorney Docket No. NAL-008WO
Figure imgf000026_0001
Figure imgf000026_0002
and pharmaceutically acceptable salts, stereoisomers, and/or N-oxides thereof. [00104] Also provided herein, in some embodiments, is a compound represented by Formula III: IPTS/128670292.1 Attorney Docket No. NAL-008WO
Figure imgf000027_0001
(Formula III) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: R11 is H or CH3; L1 is methylene or ethylene; R3 is OR”; R” is H or C1-C6 alkyl (optionally substituted by one, two or three halogens); ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C1-C4 alkyl), provided that ring X is not
Figure imgf000027_0002
wherein * indicates attachment to Y and ** indicates attachment to R1 and RH is H or C1-C4 alkyl; and R2 is selected from the group consisting of H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O- methyl, -O-ethyl, C3-C7 cycloalkyl, and heterocyclyl. [00105] In some embodiments, R2 is H or F. In some embodiments, R2 is H. [00106] Also provided herein, in some embodiments, is a compound represented by Formula IV:
Figure imgf000027_0003
(Formula IV) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: R11 is H or CH3; L1 is methylene or ethylene; IPTS/128670292.1 Attorney Docket No. NAL-008WO R3 is OR”; R” is H or C1-C6 alkyl (optionally substituted by one, two or three halogens); ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C1-C4 alkyl), provided that ring X is not
Figure imgf000028_0001
wherein * indicates attachment to Y and ** indicates attachment to R1 and RH is H or C1-C4 alkyl; and R2 is selected from the group consisting of H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O- methyl, -O-ethyl, C3-C7 cycloalkyl, and heterocyclyl. [00107] In some embodiments, R2 is H or F. In some embodiments, R2 is H. Pharmaceutical Compositions and Formulations [00108] The compounds, prodrugs, and compositions described herein can be useful as pharmaceutical compositions for administration to a subject in need thereof. [00109] Accordingly, pharmaceutical compositions are presented that can comprise at least a compound described herein, a pharmaceutically acceptable salt thereof, or a prodrug thereof, and at least one pharmaceutically acceptable carriers, diluent, stabilizers, excipients, dispersing agents, suspending agents, or thickening agents. For example, a disclosed pharmaceutical compositions may include one or more of the disclosed compounds, pharmaceutically acceptable salts, or prodrugs described herein. Contemplated compositions may include a compound, a pharmaceutically acceptable salt thereof, or a prodrug thereof in a therapeutically effective amount, for example, a disclosed pharmaceutical composition may be formulated for parenteral administration to a subject in need thereof, formulated for intravenous administration to a subject in need thereof, or formulated for subcutaneous administration to a subject in need thereof. Methods of Treatment [00110] As described above, embodiments of the present disclosure include the use of compounds, prodrugs, and pharmaceutical compositions described herein to treat a Myc protein associated proliferative disease in a subject in need thereof. Such proliferative diseases include cancer, for example, a cancer selected from a group consisting of head and neck cancer, nervous system cancer, brain cancer, neuroblastoma, lung/mediastinum cancer, breast cancer, esophageal IPTS/128670292.1 Attorney Docket No. NAL-008WO cancer, stomach cancer, liver cancer, biliary tract cancer, pancreatic cancer, small bowel cancer, large bowel cancer, colorectal cancer, gynecological cancer, genito-urinary cancer, ovarian cancer, thyroid gland cancer, adrenal gland cancer, skin cancer, melanoma, bone sarcoma, soft tissue sarcoma, pediatric malignancy, Hodgkin's disease, non-Hodgkin's lymphoma, myeloma, leukemia, and metastasis from an unknown primary site. [00111] In some embodiments, a contemplated method of treating includes treating a cancer that is a Myc protein associated cancer, e.g., wherein the Myc protein is selected from the group consisting of a N-Myc protein, a c-MYc protein, a L-Myc protein, a human N-Myc protein, a human c-Myc protein, and a human L-Myc protein. [00112] For example, provided herein is a method of treating a cancer selected from the group consisting of neuroblastoma, small cell lung carcinoma, breast cancer or a hematopoietic cancer. [00113] In some embodiments, a disclosed method to treat cancer further comprises a second therapy, wherein the secondary therapy is an antineoplastic therapy, e.g., a contemplated method may further comprise administering an antineoplastic therapy such as one or more agents selected from a DNA topoisomerase I or II inhibitor, a DNA damaging agent, an immunotherapeutic agent (e.g., an antibody, cytokine, immune checkpoint inhibitor or cancer vaccine), an antimetabolite or a thymidylate synthase (TS) inhibitor, a microtubule targeted agent, ionizing radiation, an inhibitor of a mitosis regulator or a mitotic checkpoint regulator, an inhibitor of a DNA damage signal transducer, and an inhibitor of a DNA damage repair enzyme. For example, additional antineoplastic therapy may be selected from the group consisting of immunotherapy (e.g., immuno-oncologic therapy), radiation therapy, photodynamic therapy, gene-directed enzyme prodrug therapy (GDEPT), antibody-directed enzyme prodrug therapy (ADEPT), gene therapy, and controlled diets. [00114] The present disclosure also contemplates the use of compounds, prodrugs, and pharmaceutical compositions described herein to modulate the amount and activity of a Myc protein (in vitro or in a patient), where the Myc protein may be for example a N-Myc protein, a c-MYc protein, a L-Myc protein, a human N-Myc protein, a human c-Myc protein, and/or a human L-Myc protein. [00115] For example, the disclosure provides a method of modulating the amount (e.g., the concentration) and/or activity of a Myc protein such as (e.g. degrading a Myc protein, or modulating the rate of degradation of a Myc protein) that comprises contacting a Myc protein IPTS/128670292.1 Attorney Docket No. NAL-008WO with an effective amount of a compound described herein, or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, including embodiments or from any examples, tables or figures. [00116] Contemplated methods include methods of modulating the protein-protein interactions of the Myc family protein, or a method of decreasing the amount and decreasing the level of activity of a Myc protein. [00117] A disclosed method of modulating the amount and activity of a Myc protein may include co-administering a compound described herein, or a pharmaceutically acceptable salt thereof, and a therapeutically effective amount of a second agent, e.g., therapeutic agent. EXAMPLES [00118] Below are examples of specific embodiments for carrying out the present disclosure. The examples are offered for illustrative purposes only, and are not intended to limit the scope of the present disclosure in any way. Efforts have been made to ensure accuracy with respect to numbers used (i.e., amounts, temperatures, etc.), but some experimental error and deviation should be allowed for. Abbreviations aq Aqueous Boc tert-butyloxycarbonyl Cbz Benzyloxycarbonyl DCM Dichloromethane DIPEA Diisopropylethylamine DMF N,N-dimethylformamide DMSO Dimethyl sulfoxide eq Equivalent(s) EtOAc Ethyl acetate h Hour(s) HPLC High-performance liquid chromatography IPA Isopropanol MeCN Acetonitrile IPTS/128670292.1 Attorney Docket No. NAL-008WO NMR Nuclear magnetic resonance r.t. Room temperature TFA Trifluoroacetic acid THF Tetrahydrofuran UPLC-MS Ultra-performance liquid chromatography-mass spectrometry General Experimental [00119] 1H and 13C NMR spectra were recorded in CDCl3 (residual internal standard CHCl3 = į^^^^^^^^'062-d6 (residual internal standard CD3SOCD2+^ ^į^^^^^^^^methanol-d4 (residual internal standard CD2HOD = į 3.20), or acetone-d6 (residual internal standard CD3COCD2+^ ^į^ ^^^^^^^7KH^FKHPLFDO^VKLIWV^^į^^UHSRUWHG^DUH^JLYHQ^LQ^SDUWV^SHU^million (ppm) and the coupling constants (J) are in Hertz (Hz). The spin multiplicities are reported as s = singlet, bs = broad singlet, bm = broad multiplet, d = doublet, t = triplet, q = quartet, p = pentuplet, dd = doublet of doublet, ddd = doublet of doublet of doublet, dt = doublet of triplet, td = triplet of doublet, tt = triplet of triplet, and m = multiplet. [00120] UPLC-MS analysis was carried out on a Waters Acquity UPLC system consisting of an Acquity I-Class Sample Manager-FL, Acquity I-Class Binary Solvent Manager and an Acquity UPLC Column Manager. UV detection was afforded using an Acquity UPLC PDA detector (scanning from 210 to 400 nm), whilst mass detection was achieved using aa Acquity QDa detector (mass scanning from 100–1250 Da; positive and negative modes simultaneously). A Waters Acquity UPLC BEH C18 column (2.1 × 50 mm, 1.7 mm) was used to separate the analytes. [00121] Samples were prepared by dissolution (with or without sonication) into 1 mL of 50% (v/v) MeCN in water. The resulting solutions were then filtered through a 0.2 mm syringe filter before submitting for analysis. All of the solvents, including formic acid and 36% ammonia solution, were purchased as the HPLC grade. Conditions (Acidic 2 min): 0.1% v/v Formic acid in water [Eluent A]; 0.1% v/v Formic acid in MeCN [Eluent B]; Flow rate 0.8mL/min; injection volume 2mL and 1.5 min equilibration time between samples. Conditions (Acidic 4 min): 0.1% v/v formic acid in water [Eluent A]; 0.1% v/v formic acid in MeCN [Eluent B]; Flow rate 0.8mL/min; injection volume 2mL and 1.5 min equilibration time between samples. Conditions (Basic 2 min): 0.1% ammonia in water [Eluent A]; 0.1% ammonia in MeCN [Eluent B]; Flow IPTS/128670292.1 Attorney Docket No. NAL-008WO rate 0.8mL/min; injection volume 2mL and 1.5 min equilibration time between samples. Conditions (Basic 4 min): 0.1% ammonia in water [Eluent A]; 0.1% ammonia in MeCN [Eluent B]; Flow rate 0.8mL/min; injection volume 2mL and 1.5 min equilibration time between samples. General Synthetic Schemes
Figure imgf000032_0001
A1 Formula I Scheme 1 [00122] In certain embodiments, a compound of Formula I is prepared according to Scheme 1. Intermediate A1 (e.g., disclosed herein) is reacted with amine B1 (e.g., amines disclosed herein) in the presence of a base (e.g., N,N-diisopropylethylamine) to produce a compound of Formula I. In certain embodiments, amine B1 may comprise a protecting group (e.g., tert- butyloxycarbonyl (Boc), benzyl carbamate (Cbz)). In certain embodiments, when amine B1 comprises a protecting group (e.g., tert-butyloxycarbonyl (Boc), benzyl carbamate (Cbz)), the intermediate produced from the reaction thereof with intermediate A1 in the presence of a base may further be reacted to deprotect the protecting group (e.g., in the presence of reducing agents such as hydrogen (e.g., with Pd/C as catalyst) or LiAlH4 or acid such as TFA or HBr) to produce a compound of Formula I.
Figure imgf000032_0002
C1 A1 Scheme 2 [00123] In certain embodiments, intermediate A1 is prepared according to Scheme 2. Compound C1 (e.g., disclosed herein), wherein Z is a halogen such as Br or Cl, is reacted with IPTS/128670292.1 Attorney Docket No. NAL-008WO amine D1 (e.g., amines disclosed herein), wherein Rx is H or C1-4 alkyl, in the presence of a base (e.g., N,N-diisopropylethylamine) to produce intermediate A1. Example 1: Synthesis of [2-[4-(4,5,6,7-Tetrahydropyrazolo[1,5-a]pyridin-2- ylamino)pyrimidin-2-yl]-2-azabicyclo[2.2.1]heptan-4-yl]methanol (Compound 1)
Figure imgf000033_0001
N-(2-Chloropyrimidin-4-yl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyridin-2-amine [00124] To 4H,5H,6H,7H-tetrahydropyrazolo[1,5-a]pyridin-2-amine (83 mg, 0.60 mmol) in DMSO (4 mL) was added N,N-diisopropylethylamine (0.32 mL, 1.8 mmol) then 2,4- dichloropyrimidine (90 mg, 0.60 mmol) and the reaction mixture heated at 60 °C for 18 hours. The reaction mixture was allowed to cool to room temperature and diluted with EtOAc (20 mL). The organic layer was washed with water (2 x 20 mL) and a saturated aqueous brine solution (20 mL). The organic layer was separated, dried (Na2SO4), filtered and concentrated under reduced pressure. The crude residue was purified by automated flash column chromatography, over silica gel (12 g cartridge) eluting with MeOH (0% to 10%) in CH2Cl2 to give the title compound (86 mg, 0.34 mmol, 57%) as a solid. [00125] 1H NMR (400 MHz, DMSO-d6^^į^^^^^^^^V^^^+^^^^^^^^^V^^^+^^^^^^^^^W^^J = 6.1 Hz, 2H), 2.72 (t, J = 6.3 Hz, 2H), 1.95 (td, J = 7.1, 4.5 Hz, 2H), 1.81 – 1.71 (m, 2H). [00126] UPLC-MS (Basic method, 2 min): rt = 0.92 min, m/z = 250.1 [M+H]+. [2-[4-(4,5,6,7-Tetrahydropyrazolo[1,5-a]pyridin-2-ylamino)pyrimidin-2-yl]-2- azabicyclo[2.2.1]heptan-4-yl]methanol [00127] To N-(2-chloropyrimidin-4-yl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyridin-2-amine (86 mg, 0.34 mmol) in 1-butanol (4 mL) was added N,N-diisopropylethylamine (0.18 mL, 1.0 mmol) and 2-azabicyclo[2.2.1]heptan-4-ylmethanol (53 mg, 0.41 mmol) and the reaction mixture stirred at reflux for 18 hours. The reaction mixture was allowed to cool to room temperature and diluted IPTS/128670292.1 Attorney Docket No. NAL-008WO with EtOAc (20 mL). The organic phase was washed with water (20 mL) then a saturated aqueous brine solution (20 mL). The organic layer was separated, dried (Na2SO4), filtered and concentrated under reduced pressure. The crude residue was purified by automated flash column chromatography on silica gel (12 g cartridge) eluting with 3:1 EtOAc/EtOH (v/v) with 0.5% NH3 (0% to 80%) in iso-hexane to give the title compound (78 mg, 0.23 mmol, 66%) as a solid. [00128] 1H NMR (400 MHz, DMSO-d6^^į^^^^^^^V^^^+^^^^^^^^^G^^-^ ^5.7 Hz, 1H), 6.24 – 6.20 ^P^^^+^^^^^^^^^V^^^+^^^^^^^^^V^^^+^^^^^^^^^W^^-^ ^^^^^+]^^^+^^^^^^^^^V^^^+^^^^^^^^– 3.26 (m, 1H), 3.12 – ^^^^^^P^^^+^^^^^^^^^W^^-^ ^^^^ Hz, 2H), 1.99 – 1.89 (m, 2H), 1.80 – 1.69 (m, 3H), 1.64 – 1.51 (m, 3H), 1.36 (s, 2H). [00129] UPLC-MS (Basic method, 4 min): rt = 1.29 min, m/z = 341.1 [M+H]+. Example 2: Synthesis of [2-[4-[(5-Cyclopropyl-2-methyl-pyrazol-3-yl)-methyl- amino]pyrimidin-2-yl]-2-azabicyclo[2.2.1]heptan-4-yl]methanol (Compound 2)
Figure imgf000034_0001
2-Chloro-N-(5-cyclopropyl-2-methyl-pyrazol-3-yl)-N-methyl-pyrimidin-4-amine [00130] To a solution of 2-chloro-N-(5-cyclopropyl-1H-pyrazol-3-yl)pyrimidin-4-amine (700 mg, 2.97 mmol) in dry DMF (6 mL) was added potassium carbonate 325 mesh (821 mg, 5.94 mmol) and the reaction mixture was stirred at room temperature for 10 minutes. The reaction mixture was cooled to 0 °C and methyl iodide (0.17 mL, 2.67 mmol) was added dropwise, then the reaction mixture was allowed to warm to room temperature and was stirred for 20 hours. The reaction mixture was diluted with water (20 mL) and extracted with EtOAc (2 x 30 mL), dried (Na2SO4) and concentrated under reduced pressure. The residue was purified by reverse phase basic prepHPLC to afford the title compound as an oil (105 mg, 0.40 mmol, 13%). [00131]
Figure imgf000034_0002
= 6.0 Hz, 1H), 6.04 (d, J = 5.9 Hz, 1H), 5.79 (s, 1H), 3.54 (s, 3H), 3.36 (s, 3H), 1.93 – 1.82 (m, 1H), 0.96 – 0.85 (m, 2H), 0.75 – 0.64 (m, 2H). [00132] UPLC-MS: (basic, 6 min): rt = 2.52 min, m/z = 264.1 [M+H]+. IPTS/128670292.1 Attorney Docket No. NAL-008WO [2-[4-[(5-Cyclopropyl-2-methyl-pyrazol-3-yl)-methyl-amino]pyrimidin-2-yl]-2- azabicyclo[2.2.1]heptan-4-yl]methanol [00133] To a solution of 2-azabicyclo[2.2.1]heptan-4-ylmethanol (61 mg, 0.48 mmol) and 2- chloro-N-(5-cyclopropyl-2-methyl-pyrazol-3-yl)-N-methyl-pyrimidin-4-amine (105 mg, 0.398 mmol) in 1-butanol (2.5 mL) was added N,N-diisopropylethylamine (DIPEA) (0.21 mL, 1.19 mmol). The reaction mixture was heated to reflux and stirred for 16 hours. The reaction mixture was allowed to cool to room temperature then diluted with EtOAc (10 mL) and washed with water (10 mL) and brine (10 mL), the organics separated, dried (Na2SO4) and concentrated under reduced pressure. The residue was purified on silica by automated flash column chromatography (Teledyne ISCO, 12 g cartridge) eluting with MeOH (0% to 3%) in CH2Cl2 to give the title compound as a solid (132 mg, 0.37 mmol, 91%). [00134] 1H NMR (400 MHz, DMSO-d6) į 7.80 (s, 1H), 5.90 (s, 1H), 5.43 – 5.24 (m, 1H), 4.73 – 4.66 (m, 1H), 4.53 (s, 1H), 3.64 – 3.57 (m, 2H), 3.45 (s, 3H), 3.23 (s, 3H), 3.14 – 3.04 (m, 1H), 1.87 – 1.76 (m, 1H), 1.71 (d, J = 12.2 Hz, 1H), 1.64 – 1.58 (m, 2H), 1.58 – 1.49 (m, 2H), 1.41 – 1.30 (m, 2H), 0.90 – 0.77 (m, 2H), 0.67 – 0.59 (m, 2H). [00135] UPLC-MS: (basic, 4 min): rt = 1.51 min, m/z = 355.4 [M+H]+. Example 3: Synthesis of [2-[4-[(5-Cyclopropyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl]-2- azabicyclo[2.1.1]hexan-4-yl]methanol (Compound 3)
Figure imgf000035_0001
2-Chloro-N-(5-cyclopropyl-4H-1,2,4-triazol-3-yl)pyrimidin-4-amine [00136] To a solution of 2,4-dichloropyrimidine (200 mg, 1.34 mmol) and 5-cyclopropyl-4H- 1,2,4-triazol-3-amine (250 mg, 2.01 mmol) in DMSO (10 mL) was added N,N- diisopropylethylamine (0.47 mL, 2.69 mmol), and the solution was heated to 60 °C and stirred for 18 hours. The reaction mixture was diluted with EtOAc (25 mL), and washed consecutively with water (5 × 20 mL) and saturated aqueous brine solution (20 mL). The organic phase was dried over Na2SO4, filtered and the volatiles removed under reduced IPTS/128670292.1 Attorney Docket No. NAL-008WO pressure to afford a yellow oil, which was purified by column chromatography over silica (12 g cartridge) eluting with a gradient of EtOAc (20% to 90%) in iso-hexane to afford the title compound as a powder (47 mg, 0.167 mmol, 12%). [00137] UPLC-MS (basic method, 2 min): rt = 0.88 min, m/z = 237.2 [M+H]+. [00138] 1H NMR (400 MHz, DMSO-d6^^į^^^^^^^G^^J = 5.6 Hz, 1H), 8.71 (d, J = 5.7 Hz, 1H), 7.65 (d, J = 5.7 Hz, 1H), 7.60 (d, J = 4.1 Hz, 1H), 1.88 (tt, J = 8.2, 4.8 Hz, 1H), 0.97 – 0.88 (m, 2H), 0.86 – 0.77 (m, 2H). [2-[4-[(5-Cyclopropyl-1H-pyrazol-3-yl)amino]pyrimidin-2-yl]-2-azabicyclo[2.1.1]hexan-4- yl]methanol [00139] To a solution of 2-chloro-N-(5-cyclopropyl-4H-1,2,4-triazol-3-yl)pyrimidin-4-amine (44 mg, 0.19 mmol) and 2-azabicyclo[2.2.1]heptan-4-ylmethanol (47 mg, 0.37 mmol) in n- butanol (5 mL) was added N,N-diisopropylethylamine (0.097 mL, 0.56 mmol), and the reaction mixture was heated to 110 °C and stirred for 16 hours. The reaction mixture was allowed to cool to ambient temperature, and the volatiles were removed under reduced pressure. This combined crude was then triturated with methanol, which left a solid in a solution which was filtered, and the solid dried under reduced pressure to afford the title compound as a solid (25 mg, 0.076 mmol, 41%). [00140] UPLC-MS (basic method, 4 min): rt = 1.29 min, m/z = 328.3 [M+H]+. [00141] 1H NMR (400 MHz, DMSO-
Figure imgf000036_0001
5.4 Hz, 1H), 7.31 (s, 2H), 6.78 (d, J = 5.4 Hz, 1H), 4.58 (s, 1H), 4.39 (s, 1H), 3.67 (d, J = 3.6 Hz, 2H), 3.42 (dd, J = 9.5, 2.9 Hz, 1H), 3.19 – 3.11 (m, 1H), 1.90 – 1.74 (m, 2H), 1.73 – 1.61 (m, 3H), 1.49 – 1.42 (m, 2H), 0.92 – 0.78 (m, 4H). Example 4: Synthesis of [2-[4-[(5-Cyclopropyl-4-methyl-1H-pyrazol-3-yl)amino]pyrimidin- 2-yl]-2-azabicyclo[2.2.1]heptan-4-yl]methanol (Compound 4)
Figure imgf000036_0002
IPTS/128670292.1 Attorney Docket No. NAL-008WO 2-Chloro-N-(5-cyclopropyl-4-methyl-1H-pyrazol-3-yl)pyrimidin-4-amine [00142] To a solution of 2,4-dichloropyrimidine (100 mg, 0.67 mmol) and 3-cyclopropyl-4- methyl-1H-pyrazol-5-amine (92 mg, 0.67 mmol) in DMSO (4 mL) was added N,N- diisopropylethylamine (0.35 mL, 2.0 mmol), and the solution was heated to 60 °C and stirred for 18 hours. The reaction mixture was diluted with EtOAc (20 mL), and the organic phase was washed with water (20 mL). The aqueous was extracted with EtOAc (2 x 20 mL) and the combined organics washed with a saturated aqueous brine solution (40 mL). The organic phase was dried (Na2SO4), filtered concentrated under reduced pressure. The residue was purified on silica by flash column chromatography (12 g cartridge) eluting with MeOH (0% to 20%) in CH2Cl2 to afford the title compound as a solid (50 mg, 0.20 mmol, 30%). [00143] UPLC-MS (basic method, 2 min): rt = 0.91 min, m/z = 250.2 [M+H]+. [00144] 1H NMR (400 MHz, DMSO-d6^^į^11.97 (s, 1H), 9.65 (s, 1H), 8.08 (d, J = 6.0 Hz, 1H), 6.90 (s, 1H), 1.84 (s, 3H), 1.77 (td, J = 8.6, 4.4 Hz, 1H), 0.90 – 0.80 (m, 2H), 0.74 – 0.66 (m, 2H).
Figure imgf000037_0001
[00145] To a solution of 2-chloro-N-(5-cyclopropyl-4-methyl-1H-pyrazol-3-yl)pyrimidin-4- amine (50 mg, 0.20 mmol) in n-butanol (4 mL) was added N,N-diisopropylethylamine (0.10 mL, 0.60 mmol) and 2-azabicyclo[2.2.1]heptan-4-ylmethanol (28 mg, 0.22 mmol). The reaction mixture was stirred at reflux for 18 hours. The reaction mixture was allowed to cool to room temperature and diluted with EtOAc (15 mL) and washed with water (20 mL) then a saturated aqueous brine solution (20 mL). The organic phase was separated, dried over Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by flash column chromatography over silica gel (12 g cartridge) eluting with 3:1 EtOAc:EtOH + 0.5% NH3 (0% to 80%) in iso-hexane to give the title compound as a solid (40 mg, 0.12 mmol, 60%). [00146] UPLC-MS (basic method, 4 min): rt = 1.34 min, m/z = 341.1 [M+H]+. [00147] 1H NMR (400 MHz, DMSO-d6^^į^^^^^^^^V^^^+^^^^^^^^^V^^^+^^^^^^^^^G^^-^ ^^^^^+]^^ ^+^^^^^^^^^V^^^+^^^^^^^^^V^^^+^^^^^^^^^V^^^+^^^^^^^^^G^^-^ ^^^^^+]^^^+^^^^^^^^^G^^-^ ^^^^^+]^^^+^^^ ^^^^^^G^^-^ ^^^^^+]^^^+^^^^^^^^^V^^^+^^^^^^^^– 1.65 (m, 2H), 1.64 – 1.54 (m, 2H), 1.54 – 1.48 (m, 1H), 1.39 – 1.29 (m, 2H), 0.90 – 0.81 (m, 2H), 0.77 – 0.67 (m, 2H). IPTS/128670292.1 Attorney Docket No. NAL-008WO Example 5: Synthesis of [2-[4-[(5-cyclopropylpyrazin-2-yl)amino]pyrimidin-2-yl]-2- azabicyclo[2.2.1]heptan-4-yl]methanol (Compound 5)
Figure imgf000038_0001
N-(5-Cyclopropylpyrazin-2-yl)-2-methylsulfanyl-pyrimidin-4-amine [00148] A solution of 2-methylthio-4-chloropyrimidine (70 ^L, 0.62 mmol), 5- cyclopropylpyrazin-2-amine (101 mg, 0.75 mmol) in 1,4-dioxane (5 mL) was sparged with nitrogen for 10 min. To that were added cesium carbonate (609 mg, 1.87 mmol), 4,5- bis(diphenylphosphino)-9,9-dimethylxanthene (36 mg, 0.060 mmol) and bis(dibenzylideneacetone)palladium(0) (36 mg, 0.06 mmol) and the reaction mixture was heated to reflux for 2.5 h. The reaction mixture was filtered through a pad of celite, and the filtrate was concentrated under reduced pressure. The crude residue which was purified by column chromatography over silica gel eluting with a gradient of 3:1 EtOAc:EtOH (0% to 60%) in iso-hexane to afford the title compound as a solid (134 mg, 0.51 mmol, 81%). [00149] UPLC-MS (basic method, 2 mins): rt: 1.03 min, m/z = 260.0 [M+H]+. [00150] 1H NMR (400 MHz, DMSO-d6^^į^^^^^^^^V^^^+^^^^^^^^^V^^^+^^^^^^^^^G^^J = 1.5 Hz, 1H), 8.26 (d, J = 5.8 Hz, 1H), 7.18 (d, J = 5.8 Hz, 1H), 2.20 – 2.09 (m, 1H), 1.00 – 0.95 (m, 2H), 0.91 – 0.86 (m, 2H). 3H singlet obscured by solvent peak. N-(5-Cyclopropylpyrazin-2-yl)-2-methylsulfonyl-pyrimidin-4-amine IPTS/128670292.1 Attorney Docket No. NAL-008WO [00151] To a stirred solution of N-(5-cyclopropylpyrazin-2-yl)-2-methylsulfanyl-pyrimidin-4- amine (130 mg, 0.50 mmol) in DCM (5 mL) at 0 °C was added 3-chloroperoxybenzoic acid (260 mg, 1.50 mmol) and the reaction mixture was stirred at room temperature for 3 h. The resulting mixture was quenched with a 1 M aqueous sodium thiosulphate solution (5 mL) and treated with a saturated aqueous solution of NaHCO3 (10 mL) followed by extraction with 9:1 DCM/MeOH (2 x 20 mL). The organic phase was washed with water (3 x 10 mL), then a saturated aqueous brine solution (10 mL). The organic phase was dried over Na2SO4, then concentrated to dryness under reduced pressure. The residue was purified by column chromatography over silica gel eluting with a gradient of 3:1 EtOAcEtOH (0% to 50%) in iso-hexane to afford the title compound as a solid (50 mg, 0.17 mmol, 33%). [00152] UPLC-MS (acidic method, 2 mins): rt: 0.87 min, m/z = 292.1 [M+H]+. [00153] 1H NMR (400 MHz, DMSO-d6^^į^^^^^^^^V^^^+^^^^^^^^^V^^^+^^^^^^^^^G^^J = 5.9 Hz, 1H), 8.37 (d, J = 1.5 Hz, 1H), 7.72 (s, 1H), 3.35 (s, 3H), 2.23 – 2.12 (m, 1H), 1.01 – 0.97 (m, 2H), 0.93 – 0.88 (m, 2H). [2-[4-[(5-cyclopropylpyrazin-2-yl)amino]pyrimidin-2-yl]-2-azabicyclo[2.2.1]heptan-4- yl]methanol [00154] A suspension of N-(5-cyclopropylpyrazin-2-yl)-2-methylsulfonyl-pyrimidin-4-amine (45 mg, 0.15 mmol), 2-azabicyclo[2.2.1]heptan-4-ylmethanol (27 mg, 0.18 mmol) and N,N- diisopropylethylamine (0.081 mL, 0.46 mmol) in n-butanol (1 mL) was heated to reflux and stirred for 3 h. The reaction mixture was concentrated to dryness under reduced pressure. The residue was purified by reversed-phase basic preparative HPLC to afford the title compound as a solid (28 mg, 0.080 mmol, 54%). [00155] UPLC-MS (basic method, 4 mins): rt: 1.43 min, m/z = 339.1 [M+H]+. [00156] 1H NMR (400 MHz, DMSO-d6^^į^^^^^^^V^^^+^^^^^^^^^P^^^+^^^^^^^^^G^^-^ ^^^^^+]^^ 1H), 7.98 – 7.92 (m, 1H), 6.53 – 6.31 (m, 1H), 4.71 (s, 1H), 4.53 (s, 1H), 3.66 – 3.59 (m, 2H), 3.41 (s, 1H), 3.18 – 3.08 (m, 1H), 2.17 – 2.05 (m, 1H), 1.84 – 1.69 (m, 1H), 1.64 – 1.55 (m, 3H), 1.44 – 1.33 (m, 2H), 0.97 – 0.90 (m, 2H), 0.89 – 0.84 (m, 2H). Example 6: Synthesis of [2-[4-[(5-Cyclopropylthiazol-2-yl)amino]pyrimidin-2-yl]-2- azabicyclo[2.2.1]heptan-4-yl]methanol (Compound 6) IPTS/128670292.1 Attorney Docket No. NAL-008WO
Figure imgf000040_0001
[00157] To a suspension of 2,4-dichloropyrimidine (159 mg, 1.07 mmol) and 5-cyclopropyl- thiazol-2-ylamine (100 mg, 0.71 mmol) in IPA (3 mL) was added N,N-diisopropylethylamine (0.25 mL, 1.43 mmol) and it was heated to reflux for 24 hours. The reaction mixture was concentrated under reduced pressure and diluted with water (10 mL) then it was extracted with DCM (2 x 10 mL). The combined organic extracts were dried over Na2SO4, then concentrated to dryness under reduced pressure. The crude residue was purified by column chromatography over silica gel eluting with a gradient of EtOAc (0% to 50%) in iso-hexane to afford the title compound as a solid (36 mg, 0.14 mmol, 20%). [00158] UPLC-MS (basic method, 2 min): rt = 1.12 min, m/z = 253.0 [M+H]+. [00159] 1H NMR (400 MHz, DMSO-d6^^į^^^^^^^V^^^+^^^^^^^^^G^^J = 5.8 Hz, 1H), 8.65 (d, J = 5.8 Hz, 1H), 7.41 (s, 1H), 1.95 – 1.84 (m, 1H), 0.89 – 0.82 (m, 2H), 0.63 – 0.58 (m, 2H). [2-[4-[(5-Cyclopropylthiazol-2-yl)amino]pyrimidin-2-yl]-2-azabicyclo[2.2.1]heptan-4- yl]methanol [00160] A suspension of N-(2-chloropyrimidin-4-yl)-5-cyclopropyl-thiazol-2-amine (35 mg, 0.14 mmol), 2-azabicyclo[2.2.1]heptan-4-ylmethanol (22 mg, 0.15 mmol), N,N- diisopropylethylamine (0.072 mL, 0.41 mmol) in n-butanol (1 mL) was heated to 100 °C and stirred for 1 hour. The reaction mixture was concentrated under reduced pressure to afford the crude which was purified by column chromatography over silica gel eluting with a gradient of EtOAc (0% to 100%; v/v) in iso-hexane followed by MeOH (0% to 5%; v/v) in EtOAc to afford the title compound as a solid (17 mg, 0.050 mmol, 35%). [00161] UPLC-MS (basic method, 4 mins): rt: 1.57 min, m/z = 344.1 [M+H]+. [00162] 1H NMR (400 MHz, DMSO-d6^^į^^^^^^^V^^^+^^^^^^^^^G^^-^ ^^^^^+]^^^+^^^^^^^^– 7.83 (m, 1H), 7.48 (d, J = 15.9 Hz, 1H), 4.73 – 4.67 (m, 1H), 4.63 – 4.56 (s, 1H), 3.63 (m, 2H), 3.12 (d, J = 9.8 Hz, 1H), 1.82 – 1.75 (m, 2H), 1.63 – 1.55 (m, 4H), 1.41 – 1.34 (m, 2H), 1.26 – 1.20 (m, 1H), 0.86 – 0.81 (m, 2H), 0.55 – 0.53 (m, 1H). IPTS/128670292.1 Attorney Docket No. NAL-008WO Example 7: Degradation of MycC/MycN Protein [00163] For L363 cells (suspension), 1E6 cells are plated into each well of a 6 well plate. For SK-N-BE(2) cells (adherent), 5E5 cells are plated into each well of a 6 well dish. Cells are cultured for 24 hrs then treated with exemplary compounds at 0.1, 0.25, 0.5, 1.0, 3.0 and 6.0 mM final assay concentrations plus DMSO control. All compounds are diluted to 10 mM in DMSO. Cells are treated with the compound for 24 hrs, then for both cell types, media containing cells are removed from wells into a 15ml centrifuge tube, and remaining adherent SK-N-BE(2) cells are also scraped from the wells into the appropriate tubes. Tubes are centrifuged, cells are washed with PBS then re-centrifuged to pellet cells. A RIPA buffer cocktail are added to the cells on ice for 5 mins. Cell lysates are clarified by centrifugation and stored at -80 degrees until required. BCA assay is performed on each lysate to determine the protein concentration. [00164] For validation studies of antibodies, lysates and antibodies are used at a number of concentrations (Lysates: 2, 1, 0.2mg/ml; Antibodies: 1 in 50, 1 in 200 dilution). Once an appropriate lysate concentration and antibody concentration is determined, samples are screened LQ^WKH^-(66^WHFKQRORJ\^^3URWHLQ^6LPSOH^^6DQ^-RVH^^&$^- https://www.proteinsimple.com/jess.html). [00165] Target protein antibodies (n-myc and c-myc) are detected in the chemi-luminescence channel and loading controls (tubulin and GAPDH) are detected using a Near Infra Red (NIR) labeled secondary antibody. Cell proliferation/viability measures [00166] For SK-N-EB2 adherent cells, 5E5 cells in 1.9mls media are plated into 6 well dishes and incubated for 24hrs. Exemplary compounds are added (100ul, 1 in 20 dilution in media) to each well (final assay concentration 6, 3, 1 and 0.5mM) together with DMSO control wells and incubated for 24hrs. Cells are scrapped off the plate, centrifuged, washed with PBS, centrifuged, then a RIPA buffer cocktail added to the cells (100ul), centrifuged and stored at -80 for later analysis. For L363 suspension cells, 1E6 cells are plated into 24 well dishes (950ul media) and incubated for 24hrs. Exemplary compounds are added (50ul, 1 in 20 dilution in media) to each well (final assay concentration 6, 3, 1 and 0.5 mM) together with DMSO control wells and incubated for 24hrs. Cells are aspirated into tubes, centrifuged, washed with PBS, centrifuged, then a RIPA buffer cocktail added to the cells (100ul), centrifuged and stored at -80 for later analysis. IPTS/128670292.1 Attorney Docket No. NAL-008WO [00167] For Western blot, a BCA (total protein) assay is run on all samples, these are then run in batches of 5 compounds plus control (DMSO) on each Western blot run – n-myc and c-myc are run in separate experiments in the chemiluminescence channel. Both tubulin and GAPDH are run as loading controls in all lanes in the near infrared channel. [00168] For cytotox, both SK-N-EB2 or L363 cells are run in 384 well format. For SK-N-EB2 cells, 5000 cells per well (in 30ul media) are incubated for 24hrs prior to the addition of compounds (10ul, 1 in 4 dilution, 10mM top final concentration, 1 in 2 dilutions) for 24hrs. For L363 cells, 2000 cells per well (30ul media) are incubated for 24hrs prior to the addition of compounds (10ul, 10mM 1 in 2 dilutions) for 24hrs. In both cases Promega Cell Titer GLO is added according to the manufacturer’s instructions and the plates are read immediately in the luminometer. Table 1. Percent Degradation of MycC/MycN Protein by Various Compounds
Figure imgf000042_0001
Key: ****: degradation 80-100% ***: degradation 50-79% **: degradation 20-49% *: degradation <20% ND – No Degradation [00169] It will be appreciated that compounds reported as a salt form (e.g., a TFA salt) may or may not have a 1:1 stoichiometry, and/or for example, reported potency concentrations or other assay results may be, e.g., slightly higher or lower. [00170] The practice of the present disclosure will employ, unless otherwise indicated, conventional methods of organic chemistry, protein chemistry, biochemistry, recombinant DNA techniques and pharmacology, within the skill of the art. While the disclosure has been particularly shown and described with reference to a preferred embodiment and various alternate IPTS/128670292.1 Attorney Docket No. NAL-008WO embodiments, it will be understood by persons skilled in the relevant art that various changes in form and details can be made therein without departing from the spirit and scope of the disclosure. [00171] All references, issued patents and patent applications cited within the body of the instant specification are hereby incorporated by reference in their entirety, for all purposes. IPTS/128670292.1

Claims

Attorney Docket No. NAL-008WO CLAIMS 1. A compound of Formula I:
Figure imgf000044_0001
(Formula I) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: W is selected from the group consisting of N, C-H, and C-F; Y is selected from the group consisting of NH, N-CH3, O, S, CH2, CF2, CH(CH3),
Figure imgf000044_0002
ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C1-C4 alkyl), provided that ring X is not
Figure imgf000044_0003
wherein * indicates attachment to Y and ** indicates attachment to R1 and RH is H or C1-C4 alkyl; ring Z is a 4-10 membered N-bound heterocyclic, wherein Z may optionally be substituted by one or two substituents each independently selected from the group consisting of halo, hydroxyl, C1-C4 alkyl (optionally substituted by one, two or three halogens), oxo, C1-C4 alkoxy, and cyano; L1 is bond or C1-C6 alkylene (optionally substituted by one, two or three R4); R3 is OR’; R4 is each independently selected from the group consisting of halogen and C1-C6 alkyl (optionally substituted by one, two or three halogens), or two R4 together with the carbon to which the R4 are attached form a C3-C5 carbocyclyl; R’ is each independently selected from the group consisting of H and C1-C6 alkyl (optionally substituted by one, two or three halogens); IPTS/128670292.1 Attorney Docket No. NAL-008WO R1 is selected from the group consisting of C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, heteroaryl, cyano, halo, C1-C4alkyl, and H; wherein C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, or heteroaryl may be substituted by one, two or three substituents each independently selected from halo and C1-C4alkyl (optionally substituted by one, two or three halogens); and R2 is selected from the group consisting of H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O- methyl, -O-ethyl, C3-C7 cycloalkyl, and heterocyclyl. 2. The compound of claim 1, wherein W is N and Y is NH, and having the Formula Ia:
Figure imgf000045_0001
(Formula Ia) or a pharmaceutically acceptable salt, stereoisomer and/or N-oxide thereof. 3. The compound of claim 1 or 2, wherein R1 is a 5-6 membered heterocyclyl or C3-C6 cycloalkyl. 4. The compound of any one of claims 1-3, wherein R1 is a C3-C6 cycloalkyl. 5. The compound of any one of claims 1-4, wherein R1 is cyclopropyl. 6. The compound of any one of claims 1-4, wherein R1 is cyclopentyl. 7. The compound of any one of claims 1-6, wherein ring Z is selected from the group consisting of 4-6 membered monocyclic heterocycle, 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic heterocycle, and 6-10 membered bridged heterocycle. 8. The compound of any one of claims 1-7, wherein ring Z is selected from the group consisting of 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic heterocyclyl, and 6-10 membered bridged heterocycle. 9. The compound of any one of claims 1-8, wherein ring Z is 6-10 membered bridged heterocycle. 10. The compound of any one of claims 1-9, wherein ring Z is selected from the group consisting of: IPTS/128670292.1 Attorney Docket No. NAL-008WO
Figure imgf000046_0001
. 11. The compound of any one of claims 1-10, wherein ring Z is selected from the group consisting of:
Figure imgf000046_0002
. 12. The compound of any one of claims 1-11, represented by Formula Ib:
Figure imgf000046_0003
(Formula Ib) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof. 13. The compound of any one of claims 1-11, represented by Formula Ic:
Figure imgf000046_0004
(Formula Ic) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof. 14. The compound of any one of claims 1-11, represented by Formula Id:
Figure imgf000046_0005
(Formula Id) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof. IPTS/128670292.1 Attorney Docket No. NAL-008WO 15. The compound of any one of claims 1-14, wherein ring X is selected from the group consisting of 6-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl containing at least one nitrogen (optionally substituted by C1-C4 alkyl). 16. The compound of any one of claims 1-15, wherein ring X is selected from the group consisting of:
Figure imgf000047_0001
, wherein * indicates attachment to Y and ** indicates attachment to R1. 17. The compound of any one of claims 1-16, wherein L1 is C1-C4 alkylene. 18. The compound of claim 17, wherein L1 is methylene. 19. The compound of any one of claims 1-18, wherein R3 is selected from the group consisting of OH, O-methyl, O-ethyl, O-isopropyl, O-n-propyl, O-n-butyl, and O-tert-butyl. 20. The compound of any one of claims 1-19, wherein R3 is OH. 21. The compound of any one of claims 1-20, wherein R2 is H or F. 22. The compound of any one of claims 1-21, wherein R2 is H. 23. A compound selected from the group consisting of:
Figure imgf000047_0002
IPTS/128670292.1 Attorney Docket No. NAL-008WO
Figure imgf000048_0001
Attorney Docket No. NAL-008WO
Figure imgf000049_0001
and pharmaceutically acceptable salts, stereoisomers, and/or N-oxides thereof. 24. A compound of Formula II:
Figure imgf000049_0002
(Formula II) or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, wherein: IPTS/128670292.1 Attorney Docket No. NAL-008WO W is selected from the group consisting of N, C-H, and C-F; Y is selected from the group consisting of NH, N-CH3, O, S,
Figure imgf000050_0001
Figure imgf000050_0002
ring X is 5-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl (optionally substituted by one or two C1-C4 alkyl), provided that ring X is not
Figure imgf000050_0003
wherein * indicates attachment to Y and ** indicates attachment to R1 and RH is H or C1-C4 alkyl; ring Z is selected from the group consisting of 4, 5, or 7-10-membered N-bound monocyclic heterocyclyl, 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic heterocycle, and 6-10 membered bridged heterocycle, wherein Z may optionally be substituted by one or two substituents each independently selected from the group consisting of halo, hydroxyl, C1-C4 alkyl (optionally substituted by one, two or three halogens), oxo, C1-C4 alkoxy, and cyano; L1 is bond or C1-C6 alkylene (optionally substituted by one, two or three R4); R3 is OR’; R4 is each independently selected from the group consisting of halogen and C1-C6 alkyl (optionally substituted by one, two or three halogens), or two R4 together with the carbon to which the R4 are attached form a C3-C5 carbocyclyl; R’ is each independently selected from the group consisting of H and C1-C6 alkyl (optionally substituted by one, two or three halogens); R1 is selected from the group consisting of C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, heteroaryl, cyano, halo, C1-C4alkyl, and H; wherein C3-C10 cycloalkyl, spiro C5-C10 bicycloalkyl, heterocyclyl, or heteroaryl may be substituted by one, two or three substituents each independently selected from halo and C1-C4alkyl (optionally substituted by one, two or three halogens); and R2 is selected from the group consisting of H, F, CF3, -C(O)-O-methyl, -C(O)OH, -O- methyl, -O-ethyl, C3-C7 cycloalkyl, and heterocyclyl. IPTS/128670292.1 Attorney Docket No. NAL-008WO 25. The compound of claim 24, wherein W is N and Y is NH, and having the Formula IIa:
Figure imgf000051_0001
(Formula IIa) or a pharmaceutically acceptable salt, stereoisomer and/or N-oxide thereof. 26. The compound of claim 23 or 24, wherein R1 is a 5-6 membered heterocyclyl or C3-C6 cycloalkyl. 27. The compound of any one of claims 23-25, wherein R1 is a C3-C6 cycloalkyl. 28. The compound of any one of claims 23-26, wherein R1 is cyclopropyl. 29. The compound of any one of claims 23-26 wherein R1 is cyclopentyl. 30. The compound of any one of claims 23-29, wherein ring Z is selected from the group consisting of 4 or 5 membered monocyclic heterocycle, 6-10 membered spiroheterocycle, 6-10 membered fused bicyclic heterocycle, and 6-10 membered bridged heterocycle. 31. The compound of any one of claims 23-30, wherein ring Z is selected from the group consisting of 4 or 5 membered monocyclic heterocycle and 6-10 membered bridged heterocycle. 32. The compound of any one of claims 23-31, wherein ring Z is selected from the group consisting of:
Figure imgf000051_0002
. 33. The compound of any one of claims 23-32, wherein ring X is selected from the group consisting of 6-10 membered heterocyclic (optionally substituted by oxo) or 5-6 membered heteroaryl containing at least one nitrogen (optionally substituted by C1-C4 alkyl). 34. The compound of any one of claims 23-33, wherein ring X is selected from the group consisting of: IPTS/128670292.1 Attorney Docket No. NAL-008WO
Figure imgf000052_0001
, wherein * indicates attachment to Y and ** indicates attachment to R1. 35. The compound of any one of claims 23-24, wherein L1 is C1-C4 alkylene. 36. The compound of claim 35, wherein L1 is methylene. 37. The compound of any one of claims 23-36, wherein R3 is selected from the group consisting of OH, O-methyl, O-ethyl, O-isopropyl, O-n-propyl, O-n-butyl, and O-tert-butyl. 38. The compound of any one of claims 23-37, wherein wherein R3 is OH. 39. The compound of any one of claims 23-38, wherein R2 is H or F. 40. The compound of any one of claims 23-39, wherein R2 is H. 41. A pharmaceutical composition comprising a compound according to any one of claims 1- 40, or a pharmaceutically acceptable salt, stereoisomer, and/or N-oxide thereof, and at least one pharmaceutically acceptable carrier or diluent. 42. The pharmaceutical composition of claim 41, wherein the composition is formulated for parenteral administration. 43. The pharmaceutical composition of claim 41, wherein the composition is formulated for intravenous administration. 44. The pharmaceutical composition of claim 41, wherein the composition is formulated for subcutaneous administration. 45. A method of treating a proliferative disease, comprising: administering to a subject with a proliferative disease a therapeutically effective amount of a compound according to any one of IPTS/128670292.1 Attorney Docket No. NAL-008WO claims 1-40, or a pharmaceutically acceptable salt, stereoisomer and/or N-oxide thereof, or a therapeutically effective amount of the pharmaceutical composition of any one of claims 41-44. 46. The method of claim 45, wherein the proliferative disease is cancer. 47. The method of claim 46, wherein the cancer is selected from the group consisting of head and neck cancer, nervous system cancer, brain cancer, neuroblastoma, lung/mediastinum cancer, breast cancer, esophageal cancer, stomach cancer, liver cancer, biliary tract cancer, pancreatic cancer, small bowel cancer, large bowel cancer, colorectal cancer, gynecological cancer, genito- urinary cancer, ovarian cancer, thyroid gland cancer, adrenal gland cancer, skin cancer, melanoma, bone sarcoma, soft tissue sarcoma, pediatric malignancy, Hodgkin's disease, non- Hodgkin's lymphoma, myeloma, leukemia, and metastasis from an unknown primary site. 48. A method of modulating MycN in cells of a subject in need thereof, comprising: administering to a subject in need thereof an amount of a compound according to any one of claims 1-40, or a pharmaceutically acceptable salt, stereoisomer and/or N-oxide thereof, or a pharmaceutical composition according to any one of claims 41-44, that is effective to cause MycN modulation in cells of the subject. 49. The method of any one of claims 45-48, further comprising administering to the subject a second therapy. 50. The method of claim 49, wherein the second therapy is an antineoplastic therapy. 51. The method of claim 50, wherein the antineoplastic therapy is administration of one or more agents selected from a DNA topoisomerase I or II inhibitor, a DNA damaging agent, an immunotherapeutic agent, an antimetabolite or a thymidylate synthase (TS) inhibitor, a microtubule targeted agent, ionising radiation, an inhibitor of a mitosis regulator or a mitotic checkpoint regulator, an inhibitor of a DNA damage signal transducer, and an inhibitor of a DNA damage repair enzyme. 52. The method of claim 50, wherein the antineoplastic therapy is selected from the group consisting of immunotherapy, radiation therapy, photodynamic therapy, gene-directed enzyme prodrug therapy (GDEPT), antibody-directed enzyme prodrug therapy (ADEPT), gene therapy, and controlled diets. IPTS/128670292.1
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