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WO2024233639A2 - Stat degraders and uses thereof - Google Patents

Stat degraders and uses thereof Download PDF

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Publication number
WO2024233639A2
WO2024233639A2 PCT/US2024/028326 US2024028326W WO2024233639A2 WO 2024233639 A2 WO2024233639 A2 WO 2024233639A2 US 2024028326 W US2024028326 W US 2024028326W WO 2024233639 A2 WO2024233639 A2 WO 2024233639A2
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alkyl
halo
phenyl
compound
membered
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French (fr)
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WO2024233639A3 (en
Inventor
Howard Bregman
Neil Bifulco
Giovanni Cianchetta
Brian Hodous
Samuel K. REZNIK
Ernest Allen SICKMIER
Yong Tang
Andrew Tasker
Xia TIAN
Rishi G. Vaswani
John Yeoman
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Recludix Pharma Inc
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Recludix Pharma Inc
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Publication of WO2024233639A2 publication Critical patent/WO2024233639A2/en
Publication of WO2024233639A3 publication Critical patent/WO2024233639A3/en
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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/66Phosphorus compounds
    • A61K31/662Phosphorus acids or esters thereof having P—C bonds, e.g. foscarnet, trichlorfon

Definitions

  • the present invention relates to novel compounds for use as degraders of Signal Transducer and Activator of Transcription (STAT).
  • STAT Signal Transducer and Activator of Transcription family of proteins consists of transcription factors that play an essential role in the regulation of cell processes, such as proliferation, differentiation, apoptosis and angiogenesis. Seven STAT genes have been identified in the human genome: STAT1, STAT2, STAT3, STAT4, STAT5a, STAT5b, and STAT6.
  • STAT3 has received particular attention because it is strongly associated with the promotion of tumor growth and immune evasion, and the only STAT family member whose genetic deletion results in embryonic lethality. Indeed, aberrantly elevated STAT3 activity has been estimated to occur in more than 70% of human cancers. Activated STAT3 mediates critical gene expression changes and molecular events that dysregulate cell growth and apoptosis, promote angiogenesis, invasion, metastasis, and the development of resistance to apoptosis, and suppress the host’s immune surveillance of the tumor, thereby making constitutively-active STAT3 a critical mediator of carcinogenesis and tumor progression.
  • STAT6 Another STAT protein that has gained recent interest is STAT6. Recent studies have shown that STAT6 signaling is essential for IL-4- and IL-13-induced epithelial mesenchymal transition (EMT) and aggressiveness of colorectal cancer cells (CRC) cells. STAT6 is involved in several aspects of inflammatory disease and other related conditions.
  • Ubiquitin-Proteasome Pathway or Ubiquitin-Proteasome System (UPS) is a critical pathway that regulates key regulator proteins and degrades misfolded or abnormal proteins.
  • UPP is central to multiple cellular processes, and if defective or imbalanced, it leads to pathogenesis of a variety of diseases.
  • the covalent attachment of ubiquitin to specific protein substrates is achieved through the action of E3 ubiquitin ligases.
  • STAT3 and/or STAT6 represent a pivotal area of investigation for the treatment of cancer, inflammatory conditions, and other therapeutic needs.
  • Targeted protein degradation has become an advancing area as seen with rapid progression of PROTACs (proteolysis targeting chimeras) to clinic.
  • PROTACs are protein degraders, which utilize the cell’s own waste disposal machinery to eliminate, instead of inhibit, a target protein.
  • PROTACs are bifunctional in that they simultaneously bind a target protein and an E3 ligase protein. This event subsequently ubiquitylates the target, marking it for proteasomal degradation. This, and related processes, represent a new therapeutic modality for the treatment of diseases.
  • the present invention provides novel bifunctional compounds for degradation of STAT3 and/or STAT6 by recruiting them to E3 uniquitin ligase for degradation.
  • the advantage of using the methods of the invention are that a broad range of targets that may be modulalted by recruiting E3 ubiquitin ligase for degradation.
  • the invention provides effective degraders of the STAT3 and/or STAT6.
  • the degraders of STAT3 and/or STAT6 have general Formula A: wherein, TBM is target binding moiety; DM is degradation moiety; and L is a linker between TBM and DM.
  • TBM is a moiety that binds to a target protein that should be degraded.
  • the TBM is the moiety that binds to STAT3 and/or STAT6.
  • the degradation moiety is responsible for induding degradation of the target.
  • the degradation moiety acts by recruitment of ubiquiting E3 ligase to the target attached to TBM, and thus results in degradation of the target.
  • the compounds of the invention provide that the TBM moiety comprises a STAT3 and/or STAT6 binding moiety.
  • the STAT3 and/or STAT6 binding moeity are inhibitors and/or modulators of STAT3 and/or STAT6.
  • the STAT3 and/or STAT6 binding are compounds provided in WO 2023/133336, which is incorporated by reference in its entirey.
  • the STAT3 and/or STAT6 binding moiety is a compound of Formula (!’): or a pharmaceutically acceptable salt thereof, wherein: q is 0 or 1 and t is 0, 1, or 2, provided that at least one of q or t is 1; p is 1 or 2; the dotted line represents a single or double bond;
  • R 1 is selected from an 8- to 10-membered fused bicyclic heteroaryl substituted with - CR la R 2a P(O)OR lb OR 2b or -CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], an 8- to 10-membered fused bicyclic heterocyclyl substituted with -CR la R 2a P(O)OR lb OR 2b or - CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], an aryl substituted with CR la R 2a P(O)OR lb OR 2b or - CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], a -(Ci-C4)alkyl(aryl) wherein said aryl portion of - (Ci-C4)alkyl(aryl) is substituted with -CR la R 2a
  • R la and R 2a are each absent or are independently selected from hydrogen, cyano, (Ci- C4)alkyl, hydroxy(Ci-C4)alkyl and fluoro; or R la and R 2a taken together with the carbon they are attached form oxo;
  • R lb and R 2b are each absent or are independently selected from hydrogen, (Ci-C4)alkyl, halo(Ci-C 4 )alkyl, -[(Ci-C4)alkyl]-OC(O)-[(Ci-C 4 )alkyl], -[(Ci-C 4 )alkyl]-C(O)O-[(Ci- C 4 )alkyl], -[(Ci-C 4 )alkyl]-0-[(Ci-C 2 o)alkyl], -[(Ci-C4)alkyl]-OC(O)-[halo(Ci-C 4 )alkyl], [(Ci- C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl], [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl], -[(Ci-C4)alkyl]-OC(
  • R 2 is selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, cyano, and hydroxyl;
  • R 3 and R 4 are each independently selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci- C4)alkyl, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -(Ci- C4)alkyl(Ci-C4)alkoxy, hydroxyl, cyano, -NR a R b , phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl, wherein said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl are each optionally substituted with, as valency permits, 1 to 3 groups selected from R s ; or R 3 and R 4 are taken together on the same carbon atom to form a (
  • R 5 and R 6 are each independently selected from hydrogen and (Ci-C4)alkyl
  • R 7 is selected from (Ci-C4)alkyl, phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said (Ci- C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from R Y and said phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from R z ; or
  • R 6 and R 7 together with the nitrogen atom to which they are attached form a 4- to 14- membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with, as valency permits, 1 to 3 groups selected from R Q ;
  • AA is the residue of an alpha or beta natural or non-natural amino acid
  • R T is selected from (Ci-C4)alkyl, benzyl, and phenyl, wherein said phenyl is optionally substituted with 1 or 2 groups selected from halo, (Ci-C4)alkyl, and halo(Ci-C4)alkyl;
  • R Q is selected from halo, (C2-C4)alkenyl, (Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, phenyl, hydroxyl, 4- to 6-membered heterocyclyl, 5- to 10-membered monocyclic or bicyclic heteroaryl, (C3-Ce)cycloalkyl, oxo, imino, -O(phenyl), -C(O)R g , - C(O)OR e , -NHC(O)R e , -C(O)NR c R d , -NR a R b
  • R g , and R h are each independently selected from, as valency permits, hydrogen, (Ci-C4)alkyl, phenyl, (C3-Ce)cycloalkyl, 4- to 6-membered heterocyclyl and 5- to 6-membered heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from R J , and said phenyl, (C3-Ce)cycloalkyl, 4- to 6- membered heterocyclyl, and 5- to 6-membered heteroaryl are each independently optionally substituted with, as valency permits, 1 to 3 groups selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy,
  • the L and DM moieties are described herein. In certain embodiments, the L and DM moieties are provided in WO 2024/064080, which is incorporated by reference in its entirety.
  • the invention provides that the compounds of the invention are compounds having the structural Formula I: or a pharmaceutically acceptable salt thereof, wherein: q is 0 or 1 and t is 0, 1, or 2, provided that at least one of q or t is 1; p is 1 or 2; the dotted line represents a single or double bond;
  • R 1 is selected from an 8- to 10-membered fused bicyclic heteroaryl substituted with - CR la R 2a P(O)OR lb OR 2b or -CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], an 8- to 10-membered fused bicyclic heterocyclyl substituted with -CR la R 2a P(O)OR lb OR 2b or - CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], an aryl substituted with CR la R 2a P(O)OR lb OR 2b or - CR la R 2a p(O)[OR lb ][NH(AA)C(O)OR T ], a -(Ci-C4)alkyl(aryl) wherein said aryl portion of - (Ci-C4)alkyl(aryl) is substituted with -CR la R 2
  • R la and R 2a are each absent or are independently selected from hydrogen, cyano, (Ci- C4)alkyl, hydroxy(Ci-C4)alkyl and fluoro; or R la and R 2a taken together with the carbon they are attached form oxo;
  • R lb and R 2b are each absent or are independently selected from hydrogen, (Ci-C4)alkyl, halo(Ci-C 4 )alkyl, -[(Ci-C4)alkyl]-OC(O)-[(Ci-C 4 )alkyl], -[(Ci-C 4 )alkyl]-C(O)O-[(Ci- C 4 )alkyl], -[(Ci-C 4 )alkyl]-0-[(Ci-C 2 o)alkyl], -[(Ci-C4)alkyl]-OC(O)-[halo(Ci-C 4 )alkyl], [(Ci- C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl], [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl], -[(Ci-C4)alkyl]-OC(
  • R 2 is selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, cyano, and hydroxyl;
  • R 3 and R 4 are each independently selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci- C4)alkyl, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -(Ci- C4)alkyl(Ci-C4)alkoxy, hydroxyl, cyano, -NR a R b , phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl, wherein said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl are each optionally substituted with, as valency permits, 1 to 3 groups selected from R s ; or R 3 and R 4 are taken together on the same carbon atom to form a (
  • R 5 and R 6 are each independently selected from hydrogen and (Ci-C4)alkyl
  • R 7 is selected from E, -R 10A E, (Ci-C4)alkyl, phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from R Y and said phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, R 11 and/or 1 to 3 groups selected from R z ; or
  • R 6 and R 7 together with the nitrogen atom to which they are attached form a 4- to 14- membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with, as valency permits, R 12 and/or 1 to 3 groups selected from R Q ;
  • R 10A , R 1OB , R 1OC , and R 10D are each independently a chemical spacer unit;
  • R 11 is selected from -NHC(O)R 10B E, -OR 10B E, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR 10B E, -NHR 10B E, -[N(Ci-C4)alkyl]R 10B E, or R 10B E, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
  • R 12 is selected from -NHC(0)R loc E, -OR 10C E, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR 10C E, -NHR 10C E, -[N(Ci-C4)alkyl]R loc E, or R 10C E, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
  • R 13 is selected from -NHC(O)R 10D E, -OR 10D E, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR 10D E, -NHR 10D E, -[N(Ci-C4)alkyl]R 10D E, or R 10D E, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
  • E is a chemical moiety that binds to E3 ligase
  • AA is the residue of an alpha or beta natural or non-natural amino acid
  • R T is selected from (Ci-C4)alkyl, benzyl, and phenyl, wherein said phenyl is optionally substituted with 1 or 2 groups selected from halo, (Ci-C4)alkyl, and halo(Ci-C4)alkyl;
  • R Q is selected from halo, (C2-C4)alkenyl, (Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, phenyl, hydroxyl, 4- to 6-membered heterocyclyl, 5- to 10-membered monocyclic or bicyclic heteroaryl, (C3-Ce)cycloalkyl, oxo, imino, -O(phenyl), -C(O)R g , - C(O)OR e , -NHC(O)R e , -C(O)NR c R d , -NR a R b
  • R g , and R h are each independently selected from, as valency permits, hydrogen, (Ci-C4)alkyl, phenyl, (C3-Ce)cycloalkyl, 4- to 6-membered heterocyclyl and 5- to 6-membered heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from R J , and said phenyl, (C3-Ce)cycloalkyl, 4- to 6- membered heterocyclyl, and 5- to 6-membered heteroaryl are each independent!
  • sy optionally substituted with, as valency permits, 1 to 3 groups selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxyl, phenyl, and benzyl.
  • the disclosed compounds of Formula I and pharmaceutically acceptable salts thereof act as protein degraders of STAT3 and/or STAT6, and are useful in a variety of therapeutic applications such as, for example, in treating cancer and inflammatory conditions.
  • compositions comprising the compounds and pharmaceutically acceptable salts of Formula I, as well as methods for their preparation are also included.
  • Methods of treating conditions responsive to the degradation of STAT3 and/or STAT6 using the described compounds, pharmaceutically acceptable salts, and compositions thereof are also included.
  • the present invention provides novel bifunctional compounds for degradation of STAT3 and/or STAT6 by recruiting them to E3 uniquitin ligase for degradation.
  • the advantage of using the methods of the invention are that a broad range of targets that may be modulalted by recruiting E3 ubiquitin ligase for degradation.
  • the invention provides effective degraders of the STAT3 and/or STAT6.
  • the degraders of STAT3 and/or STAT6 have general Formula A: wherein, TBM is target binding moiety; DM is degradation moiety; and L is a linker between TBM and DM.
  • TBM is a moiety that binds to a target protein that should be degraded.
  • the TBM is the moiety that binds to STAT3 and/or STAT6.
  • the degradation moiety is responsible for induding degradation of the target.
  • the degradation moiety acts by recruitment of ubiquiting E3 ligase to the target attached to TBM, and thus results in degradation of the target.
  • the compounds of the invention provide that the TBM moiety comprises a STAT3 and/or STAT6 binding moiety.
  • the STAT3 and/or STAT6 binding moeity are inhibitors and/or modulators of STAT3 and/or STAT6.
  • the STAT3 and/or STAT6 binding are compounds provided in WO 2023/133336, which is incorporated by reference in its entirey.
  • a compound of structural Formula I or a pharmaceutically acceptable salt thereof, wherein: q is 0 or 1 and t is 0, 1, or 2, provided that at least one of q or t is 1; p is 1 or 2; the dotted line represents a single or double bond;
  • R 1 is selected from an 8- to 10-membered fused bicyclic heteroaryl substituted with - CR la R 2a P(O)OR lb OR 2b or -CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], an 8- to 10-membered fused bicyclic heterocyclyl substituted with -CR la R 2a P(O)OR lb OR 2b or - CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], an aryl substituted with CR la R 2a P(O)OR lb OR 2b or - CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], a -(Ci-C4)alkyl(aryl) wherein said aryl portion of - (Ci-C4)alkyl(aryl) is substituted with -CR la R 2a
  • R la and R 2a are each absent or are independently selected from hydrogen, cyano, (Ci- C4)alkyl, hydroxy(Ci-C4)alkyl and fluoro; or R la and R 2a taken together with the carbon they are attached form oxo;
  • R lb and R 2b are each absent or are independently selected from hydrogen, (Ci-C4)alkyl, halo(Ci-C 4 )alkyl, -[(Ci-C4)alkyl]-OC(O)-[(Ci-C 4 )alkyl], -[(Ci-C 4 )alkyl]-C(O)O-[(Ci- C 4 )alkyl], -[(Ci-C 4 )alkyl]-0-[(Ci-C 2 o)alkyl], -[(Ci-C4)alkyl]-OC(O)-[halo(Ci-C 4 )alkyl], [(Ci- C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl], [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl], -[(Ci-C4)alkyl]-OC(
  • R 2 is selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, cyano, and hydroxyl;
  • R 3 and R 4 are each independently selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci- C4)alkyl, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -(Ci- C4)alkyl(Ci-C4)alkoxy, hydroxyl, cyano, -NR a R b , phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl, wherein said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl are each optionally substituted with, as valency permits, 1 to 3 groups selected from R s ; or R 3 and R 4 are taken together on the same carbon atom to form a (
  • R 5 and R 6 are each independently selected from hydrogen and (Ci-C4)alkyl
  • R 7 is selected from E, -R 10A E, (Ci-C4)alkyl, phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from R Y and said phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, R 11 and/or 1 to 3 groups selected from R z ; or
  • R 6 and R 7 together with the nitrogen atom to which they are attached form a 4- to 14- membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with, as valency permits, R 12 and/or 1 to 3 groups selected from R Q ;
  • R 10A , R 1OB , R 1OC , and R 10D are each independently a chemical spacer unit;
  • R 11 is selected from -NHC(O)R 10B E, -OR 10B E, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR 10B E, -NHR 10B E, -[N(Ci-C4)alkyl]R 10B E, or R 10B E, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
  • R 12 is selected from -NHC(0)R loc E, -OR 10C E, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR 10C E, -NHR 10C E, -[N(Ci-C4)alkyl]R loc E, or R 10C E, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
  • R 13 is selected from -NHC(O)R 10D E, -OR 10D E, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR 10D E, -NHR 10D E, -[N(Ci-C4)alkyl]R 10D E, or R 10D E, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
  • E is a chemical moiety that binds to E3 ligase
  • AA is the residue of an alpha or beta natural or non-natural amino acid
  • R T is selected from (Ci-C4)alkyl, benzyl, and phenyl, wherein said phenyl is optionally substituted with 1 or 2 groups selected from halo, (Ci-C4)alkyl, and halo(Ci-C4)alkyl;
  • R z is selected from halo, cyano, (Ci-C4)alkyl, (Cs-Cecycloalkyl), halo(Ci-C4)alkyl, - (Ci-C4)alkyl(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, -(Ci- C4)alkylheteroaryl, (C 2 -C4)alkenyl, halo(C 2 -C4)alkenyl, (C 2 -C4)alkynyl, halo(C 2 -C4)alkynyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -OR e , oxo, imino, phenyl, 4- to 6-membered heterocyclyl, -S(O)R e R f , -S(O) 2 R f , -S
  • R g , and R h are each independently selected from, as valency permits, hydrogen, (Ci-C4)alkyl, phenyl, (C3-Ce)cycloalkyl, 4- to 6-membered heterocyclyl and 5- to 6-membered heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from R J , and said phenyl, (C3-Ce)cycloalkyl, 4- to 6- membered heterocyclyl, and 5- to 6-membered heteroaryl are each independent!
  • sy optionally substituted with, as valency permits, 1 to 3 groups selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxyl, phenyl, and benzyl.
  • a hyphen designates the point of attachment of that group to the variable to which it is defined.
  • -NR c C(O)R e means that the point of attachment for this group occurs on the nitrogen atom.
  • halo and “halogen” refer to an atom selected from fluorine (fluoro, -F), chlorine (chloro, -Cl), bromine (bromo, -Br), and iodine (iodo, -I).
  • alkyl when used alone or as part of a larger moiety, such as “haloalkyl”, and the like, means saturated straight-chain or branched monovalent hydrocarbon radical.
  • haloalkyl includes mono, poly, and perhaloalkyl groups where the halogens are independently selected from fluorine, chlorine, bromine, and iodine.
  • Alkoxy means an alkyl radical attached through an oxygen linking atom, represented by -O-alkyl.
  • (Ci-C4)alkoxy includes methoxy, ethoxy, proproxy, and butoxy.
  • Haloalkoxy is a haloalkyl group which is attached to another moiety via an oxygen atom such as, e.g., -OCHF2 or -OCF3.
  • heteroaryl refers to a 5- to 12-membered aromatic radical containing 1-4 heteroatoms selected from N, O, and S. In some instances, nitrogen atoms in a heteroaryl may be quaternized.
  • heteroaryl may be used interchangeably with the terms “heteroaryl ring”, “heteroaryl group”, or “heteroaromatic”.
  • a heteroaryl group may be mono- or bi-cyclic.
  • Monocyclic heteroaryl includes, for example, thienyl, furanyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, oxazolyl, isoxazolyl, oxadiazolyl, thiazolyl, isothiazolyl, thiadiazolyl, pyridyl, pyridazinyl, pyrimidinyl, pyrazinyl, etc.
  • Bi-cyclic heteroaryls include groups in which a monocyclic heteroaryl ring is fused to one or more aryl or heteroaryl rings.
  • Nonlimiting examples include indolyl, benzooxazolyl, benzooxodi azolyl, indazolyl, benzimidazolyl, benzthiazolyl, benzothiopheneyl, quinolinyl, quinazolinyl, quinoxalinyl, pyrrolopyridinyl, pyrrolopyrimidinyl, pyrrolopyridinyl, thienopyridinyl, thienopyrimidinyl, indolizinyl, purinyl, cinnolinyl, naphthyridinyl, and pteridinyl. It will be understood that when specified, optional substituents on a heteroaryl group may be present on any substitutable position and, include, e.g., the position at which the heteroaryl is attached (where valency permits).
  • heterocyclyl means a 4- to 12-membered saturated or partially unsaturated heterocyclic ring containing 1 to 4 heteroatoms independently selected from N, O, and S.
  • heterocycle means “heterocycle”, “heterocyclyl”, “heterocyclyl ring”, “heterocyclic group”, “heterocyclic moiety”, and “heterocyclic radical”, are used interchangeably herein.
  • a heterocyclyl ring can be attached to its pendant group at any heteroatom or carbon atom that results in a stable structure.
  • a heterocyclyl group may be mono- or bicyclic (e.g., a bridged, fused, or spiro bicyclic ring).
  • Examples of monocyclic saturated or partially unsaturated heterocyclic radicals include, without limitation, azetidinyl, tetrahydrofuranyl, tetrahydrothienyl, terahydropyranyl, pyrrolidinyl, pyrrolidonyl, piperidinyl, oxazolidinyl, piperazinyl, dioxanyl, dioxolanyl, morpholinyl, dihydrofuranyl, dihydropyranyl, dihydropyridinyl, tetrahydropyridinyl, dihydropyrimidinyl, tetrahydropyrimidinyl, dihydrooxadizolyl, and dihydroisoxazolyl.
  • Bi-cyclic heterocyclyl groups include, e.g., unsaturated heterocyclic radicals fused to another unsaturated heterocyclic radical, cycloalkyl, aryl, or heteroaryl ring, such as for example, benzodi oxolyl, dihydrobenzodioxinyl, dihydrobenzofuranyl, dihydrobenzothiophenyl, 5-oxa-2,6-diazaspiro[3.4]oct-6-enyl, 6-thia- 2,7-diazaspiro[3.4]octanyl, 2,6-diazaspiro[3.3]heptanyl, spiro[indoline-3,3 Epyrrolidine]-yl, thiochromanyl, and the like. It will be understood that when specified, optional substituents on a heterocyclyl group may be present on any substitutable position and, include, e.g., the position at which the heterocyclyl is attached (where val
  • spiro refers to two rings that shares one ring atom (e.g., carbon).
  • fused refers to two rings that share two adjacent ring atoms with one another.
  • bridged refers to two rings that share three adjacent ring atoms with one another.
  • aryl refers to an aromatic carbocyclic single ring or two fused ring system containing 6 to 10 carbon atoms. Examples include phenyl, indanyl, tetrahydronaphthalene, and naphthyl. In one aspect, the aryl is phenyl or naphthyl.
  • cycloalkyl refers to a saturated cyclic aliphatic monocyclic or bicyclic ring system, as described herein, having from, unless otherwise specified, 3 to 10 carbon ring atoms.
  • Monocyclic cycloalkyl groups include, without limitation, cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, cycloheptyl, cycloheptenyl, and cyclooctyl. It will be understood that when specified, optional substituents on a cycloalkyl or cycloaliphatic group may be present on any substitutable position and, include, e.g., the position at which the cycloalkyl group is attached.
  • alkylene refers to a refers to a bivalent radical of a saturated, straight or branched chain hydrocarbon (e.g., CEE) of the specified length.
  • alkynylene refers to an alkylene group that has at least one triple bond within the chain e.g., -(CEEjs-CH-.
  • the “residue of an amino acid” is the moiety remaining after formation of a bond between a reactive group in another compound (e.g., an amino group) and the carboxylic acid in the amino acid, after formation of a bond between a reactive group in another compound (e.g., a carboxylic acid) and the amino group in the amino acid, or both.
  • the carboxylic acid in the amino acid no longer has the OH group and instead has a bond between the carbonyl group and the reactive group in the compound; the amino group has only one hydrogen atom and instead has a bond between the reactive group in the other compound and the nitrogen of the amino group; or both.
  • the “residue of an alpha amino acid” can be depicted structurally as NH2CR’R-C(O)-, -NHCR’R-C(O)OH or -NHCR’R-C(O)-; and the “residue of an beta amino acid” can be depicted structurally as or NH 2 CR’RCH2-C(O)-, -NHCR’RCH 2 -C(O)OH or -NHCR’RCH 2 -C(O)-, where R’ is H or Ci- Ce alkyl and R is H or Ci-Ce alkyl optionally substituted with 1 to 3 groups selected from halo, (Ci-C 3 )alkoxy, OH, NH 2 , -NH(CI-C 4 alkyl), -N[(Ci-C 4 alkyl)] 2 , SH, S(Ci-C 4 alkyl), imino, COOH, -COO(Ci-C 4 alky
  • Non-natural amino acids are known in the art and include e.g., alpha-alkyl amino acids (e.g., alpha methyl), alpha-alkylalkoxy amino acids (e.g., alpha -CH2OCH 3 ), N-methyl amino acids, homo-amino acids, etc.
  • alpha-alkyl amino acids e.g., alpha methyl
  • alpha-alkylalkoxy amino acids e.g., alpha -CH2OCH 3
  • N-methyl amino acids e.g., N-methyl amino acids, homo-amino acids, etc.
  • a chemical spacer unit refers to refers to a cleavable or non-cleavable that joins the E3 ligase binder to the remainder of the molecule described herein.
  • the chemical spacer is uncleavable in vivo.
  • the chemical spacer comprises one or more cyclic ring systems.
  • the chemical spacer comprises an alkyl chain optionally substituted by and/or interrupted with one or more chemical groups.
  • the chemical spacer comprises optimal spatial and chemical properties to effectuate optimal therapeutic activity.
  • a chemical moiety that binds to E3 ligase refers to a chemical structure that binds to the pocket or surface of E3 ligase.
  • E3 ligase binders are known in the art and include, but are not limited to CRBN, VHL, IAP, or MDM2 based E3 binders. See e.g., Angewandte Chemie International Edition 59(36), May 2020, DOI: 10.1002/anie.202004310; Medicinal Chemistry Communication 10(10), August 2019, DOE 10.1039/C9MD00272C; and Molecules 2022, 27(19), 6515; https://doi.org/10.3390/molecules27196515.
  • Stereoisomers are compounds that differ only in their spatial arrangement. Stereoisomers include all diastereomeric, enantiomeric, and epimeric forms as well as racemates and mixtures thereof.
  • a “geometric isomer” refers to isomers that differ in the orientation of substituent group in relationship to a carbon-carbon double bond, a cycloalkyl ring, or a bridged bicyclic system. Atoms (other than H) on each side of a carbon-carbon double bond may be in an E (substituents are on opposite sides of the carbon-carbon double bond) or Z (substituents are oriented on the same side) configuration.
  • “Cis” refers to substituents oriented on the same side of the ring, whereas “trans” refers to substituents oriented on opposite sides of the ring.
  • “Cis” refers to substituents oriented on the same side of the ring, whereas “trans” refers to substituents oriented on opposite sides of the ring.
  • the stereochemical configuration at a chiral center in a compound having one or more chiral centers is depicted by its chemical name (e.g., where the configuration is indicated in the chemical name by “R” or “S”) or structure (e.g., the configuration is indicated by “wedge” bonds)
  • the enrichment of the indicated configuration relative to the opposite configuration is greater than 50%, 60%, 70%, 80%, 90%, 99% or 99.9%.
  • “Enrichment of the indicated configuration relative to the opposite configuration” is a mole percent and is determined by dividing the number of compounds with the indicated stereochemical configuration at the chiral center(s) by the total number of all of the compounds with the same or opposite stereochemical configuration in a mixture.
  • the enrichment of the indicated isomer relative to the opposite isomer is greater than 50%, 60%, 70%, 80%, 90%, 99% or 99.9%.
  • “Enrichment of the indicated isomer relative to the opposite isomer” is a mole percent and is determined by dividing the number of compounds with the indicated geometrical configuration by the total number of all of the compounds with the same or opposite geometrical configuration in a mixture.
  • subject and “patient” may be used interchangeably, and means a mammal in need of treatment, e.g., companion animals (e.g., dogs, cats, and the like), farm animals (e.g., cows, pigs, horses, sheep, goats and the like) and laboratory animals (e.g., rats, mice, guinea pigs and the like).
  • companion animals e.g., dogs, cats, and the like
  • farm animals e.g., cows, pigs, horses, sheep, goats and the like
  • laboratory animals e.g., rats, mice, guinea pigs and the like.
  • the subject is a human in need of treatment.
  • treatment refers to reversing, alleviating, delaying the onset of, or inhibiting the progress of a disease or disorder, or one or more symptoms thereof, as described herein.
  • treatment may be administered after one or more symptoms have developed, i.e., therapeutic treatment.
  • treatment may be administered in the absence of symptoms.
  • treatment may be administered to a susceptible individual prior to the onset of symptoms (e.g., in light of a history of symptoms and/or in light of exposure to a particular organism, or other susceptibility factors), i.e., prophylactic treatment. Treatment may also be continued after symptoms have resolved, for example to delay their recurrence.
  • compositions described herein include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, poly acrylates, waxes, polyethylene- polyoxypropylene-block polymers,
  • the salts of the compounds described herein refer to non-toxic “pharmaceutically acceptable salts.”
  • Pharmaceutically acceptable salt forms include pharmaceutically acceptable acidic/anionic or basic/cationic salts.
  • Suitable pharmaceutically acceptable acid addition salts of the compounds described herein include e.g., salts of inorganic acids (such as hydrochloric acid, hydrobromic, phosphoric, nitric, and sulfuric acids) and of organic acids (such as, acetic acid, benzenesulfonic, benzoic, methanesulfonic, and p- toluenesulfonic acids).
  • Compounds of the present teachings with acidic groups such as carboxylic acids can form pharmaceutically acceptable salts with pharmaceutically acceptable base(s).
  • Suitable pharmaceutically acceptable basic salts include e.g., ammonium salts, alkali metal salts (such as sodium and potassium salts) and alkaline earth metal salts (such as magnesium and calcium salts).
  • Compounds with a quaternary ammonium group also contain a counteranion such as chloride, bromide, iodide, acetate, perchlorate and the like.
  • Other examples of such salts include hydrochlorides, hydrobromides, sulfates, methanesulfonates, nitrates, benzoates and salts with amino acids such as glutamic acid.
  • an effective amount or “therapeutically effective amount” refers to an amount of a compound described herein that is sufficient to achieve the desired therapeutic effect (such as treatment of a condition recited herein) under the conditions of administration.
  • the STAT3 and/or STAT6 binding moiety is a compound of Formula (!’): or a pharmaceutically acceptable salt thereof, wherein: q is 0 or 1 and t is 0, 1, or 2, provided that at least one of q or t is 1; p is 1 or 2; the dotted line represents a single or double bond;
  • R 1 is selected from an 8- to 10-membered fused bicyclic heteroaryl substituted with - CR la R 2a P(O)OR lb OR 2b or -CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], an 8- to 10-membered fused bicyclic heterocyclyl substituted with -CR la R 2a P(O)OR lb OR 2b or - CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], an aryl substituted with CR la R 2a P(O)OR lb OR 2b or - CR la R 2a P(O)[OR lb ][NH(AA)C(O)OR T ], a -(Ci-C4)alkyl(aryl) wherein said aryl portion of - (Ci-C4)alkyl(aryl) is substituted with -CR la R 2a
  • R la and R 2a are each absent or are independently selected from hydrogen, cyano, (Ci- C4)alkyl, hydroxy(Ci-C4)alkyl and fluoro; or R la and R 2a taken together with the carbon they are attached form oxo;
  • R lb and R 2b are each absent or are independently selected from hydrogen, (Ci-C4)alkyl, halo(Ci-C 4 )alkyl, -[(Ci-C4)alkyl]-OC(O)-[(Ci-C 4 )alkyl], -[(Ci-C 4 )alkyl]-C(O)O-[(Ci- C 4 )alkyl], -[(Ci-C 4 )alkyl]-0-[(Ci-C 2 o)alkyl], -[(Ci-C4)alkyl]-OC(O)-[halo(Ci-C 4 )alkyl], [(Ci- C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl], [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl], -[(Ci-C4)alkyl]-OC(
  • R 2 is selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, cyano, and hydroxyl;
  • R 3 and R 4 are each independently selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci- C4)alkyl, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -(Ci- C4)alkyl(Ci-C4)alkoxy, hydroxyl, cyano, -NR a R b , phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl, wherein said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl are each optionally substituted with, as valency permits, 1 to 3 groups selected from R s ; or R 3 and R 4 are taken together on the same carbon atom to form a (
  • R 5 and R 6 are each independently selected from hydrogen and (Ci-C4)alkyl
  • R 7 is selected from (Ci-C4)alkyl, phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said (Ci- C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from R Y and said phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from R z ; or
  • R 6 and R 7 together with the nitrogen atom to which they are attached form a 4- to 14- membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with, as valency permits, 1 to 3 groups selected from R Q ;
  • AA is the residue of an alpha or beta natural or non-natural amino acid
  • R T is selected from (Ci-C4)alkyl, benzyl, and phenyl, wherein said phenyl is optionally substituted with 1 or 2 groups selected from halo, (Ci-C4)alkyl, and halo(Ci-C4)alkyl;
  • R Q is selected from halo, (C2-C4)alkenyl, (Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, phenyl, hydroxyl, 4- to 6-membered heterocyclyl, 5- to 10-membered monocyclic or bicyclic heteroaryl, (C3-Ce)cycloalkyl, oxo, imino, -O(phenyl), -C(O)R g , - C(O)OR e , -NHC(O)R e , -C(O)NR c R d , -NR a R b
  • R g , and R h are each independently selected from, as valency permits, hydrogen, (Ci-C4)alkyl, phenyl, (C3-Ce)cycloalkyl, 4- to 6-membered heterocyclyl and 5- to 6-membered heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from R J , and said phenyl, (C3-Ce)cycloalkyl, 4- to 6- membered heterocyclyl, and 5- to 6-membered heteroaryl are each independently optionally substituted with, as valency permits, 1 to 3 groups selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy,
  • the L and DM moieties are described herein. In certain embodiments, the L and DM moieties are provided in WO 2024/064080, which is incorporated by reference in its entirety.
  • DM is an E3 ligase ligand well known to one of ordinary skill in the art including those described in M. Toure, C. M. Crews, Angew. Chem. Int. Ed., 2016, 55, 1966, T. Uehara et al.
  • L is attached to a modifiable carbon, oxygen, or nitro substitution or replacement group on one or both of DM and TBM.
  • the DM is a cereblon E3 ubiquitin ligase binding moiety (hereinafter also referred to as LBM).
  • LBM is selected from the group consisting of:
  • LBM is E3 Ubiquitin ligase binding moiety recited in Varfolomeev, E. et al., IAP Antagonists Induce Autoubiquitination of c-IAPs, NF-KB activation, and TNFa- Dependent Apoptosis, Cell, 2007, 131(4): 669-81, such as, for example: wherein L is attached to a modifiable carbon, oxygen, nitrogen or sulfur atom.
  • LBM is selected from the group consisting of:
  • the LBM is selected from the group consisting of:
  • LBM is selected from the group consisting of:
  • L is a bivalent moiety that connects TBM and DM.
  • L is a bivalent moiety that connects TBM to a lysine mimetic.
  • L is a covalent bond or a bivalent, saturated or partially unsaturated, straight or branched C1-50 hydrocarbon chain, wherein 0-6 methylene units of L may optionally be replaced by -Cy-, -CHF-, -CF 2 -, -O-, -NR-, -SiR 2 -, -Si(OH)R- -Si(OH) 2 - , -P(O)OR-, -P(O)R-, -P(O)NR 2 -, -S-, -OC(O)-, -C(O)O-, -C(O)-, -S(O)-, -S(O) 2 -, - wherein: each -Cy- is independently an optionally substituted bivalent ring selected from phenyl
  • each -Cy- is independently an optionally substituted bivalent phenylenyl. In some embodiments, each -Cy- is independently an optionally substituted 8-10 membered bicyclic arylenyl. In some embodiments, each -Cy- is independently an optionally substituted 4-7 membered saturated or partially unsaturated carbocyclylenyl. In some embodiments, each -Cy- is independently an optionally substituted 6-11 membered saturated or partially unsaturated spiro-carbocyclylenyl. In some embodiments, each -Cy- is independently an optionally substituted 8-10 membered bicyclic saturated or partially unsaturated carbocyclylenyl.
  • each -Cy is independently an optionally substituted 4-7 membered saturated or partially unsaturated heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.
  • each -Cy- is independently an optionally substituted 6-11 membered saturated or partially unsaturated spiro-heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.
  • each -Cy- is independently an optionally substituted 8-10 membered bicyclic saturated or partially unsaturated heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur.
  • each -Cy- is independently an optionally substituted 5-6 membered heteroaryl enyl having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, each -Cy- is independently an optionally substituted 8-10 membered bicyclic heteroaryl enyl having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur.
  • -Cy- is substituted with Ci-6 alkyl (e.g., methyl, ethyl, isopropyl). In some embodiments, -Cy- is substituted with oxo. In some embodiments, -Cy- is substituted with halogen. In some embodiments, -Cy- is substituted with fluoro. In some embodiments, -Cy- is substituted with geminal difluoro. In some embodiments, -Cy- is substituted with -OH. In some embodiments, -Cy- is substituted with -NR2.
  • r is 0. In some embodiments, r is 1. In some embodiments, r is 2. In some embodiments, r is 3. In some embodiments, r is 4. In some embodiments, r is 5. In some embodiments, r is 6. In some embodiments, r is 7. In some embodiments, r is 8. In some embodiments, r is 9. In some embodiments, r is 10.
  • L is -NR-(Ci-io aliphatic)-. In some embodiments, L is -(Ci- 10 aliphatic)- NR-(Cl-lOaliphatic)-. In some embodiments, L is -(C1-10 aliphatic)-NR- (CH2CH20)I-IOCH 2 CH2-. In some embodiments, L is -Cy-NR-(Ci-io aliphatic)-. In some embodiments, L is -Cy-(Ci-io aliphatic)-NR-. In some embodiments, L is -Cy-(Ci-io aliphatic)- NR-(Ci-io aliphatic)-.
  • L is -(Ci-io aliphatic)-Cy-NR-(Ci-io aliphatic)-. In some embodiments, L is -(Ci-io aliphatic)-Cy-(Ci-io aliphatic)-NR-. In some embodiments, L is -(Ci-io aliphatic)-Cy-(Ci-io aliphatic)-NR-(Ci-io aliphatic)-. In some embodiments, L is -Cy- (Ci-io aliphatic)-Cy-NR-. In some embodiments, L is -Cy-(Ci-io aliphatic)-NR-Cy-.
  • L is -Cy-(Ci-io aliphatic)-Cy-NR-(Ci-io aliphatic)-. In some embodiments, L is - Cy-(Ci-io aliphatic)-NR-Cy-(Ci-io aliphatic)-.
  • L is -CONR-(Ci-io aliphatic)-. In some embodiments, L is - (Ci-io aliphatic)-CONR-(Ci-io aliphatic)-. In some embodiments, L is -(Ci-io aliphatic)-CONR- (CH2CH2O)i- 10CH2CH2-. In some embodiments, L is -Cy-CONR-(Ci-io aliphatic). In some embodiments, L is -Cy-(Ci- 10 aliphatic)-CONR-.
  • L is -Cy-(Ci-io aliphatic)-CONR-(Ci-io aliphatic)-. In some embodiments, L is -(C1-10 aliphatic)-Cy-CONR- (C1-10 aliphatic)-. In some embodiments, L is -(C1-10 aliphatic)-Cy-(Ci-io aliphatic)-CONR-. In some embodiments, L is -(C1-10 aliphatic)-Cy-(Ci-io aliphatic)- CONR-(Ci-io aliphatic)-.
  • L is -Cy-(Ci-io aliphatic)-Cy-CONR-. In some embodiments, L is -Cy-(Ci- 10 aliphatic)-CONR-Cy-. In some embodiments, L is -Cy-(Ci-io aliphatic)-Cy- CONR-(Ci-io aliphatic)-. In some embodiments, L is -Cy-(Ci-io aliphatic)-CONR-Cy-(Ci-io aliphatic)-.
  • L is any bivalent linker provided in WO 2024/064080, incorporated herein by reference in its entirey.
  • R 6 and R 7 in the compound of Formula I or pharmaceutically acceptable salt thereof together with the nitrogen atom to which they are attached form a 4- to 14-membered monocyclic or bicyclic heterocyclyl or a 5 - to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with R 12 and/or, as valency permits, optionally further substituted with 1 to 3 groups selected from R Q .
  • the compound of Formula I is of the structural Formula II:
  • the compound of Formula I, or pharmaceutically acceptable salt thereof is of the structural Formula HI, IV, V, or VII: wherein the variables are as described above for Formula I or the second embodiment.
  • the compound of Formula I, or pharmaceutically acceptable salt thereof is of the structural Formula VIII, VIII’, IX, X, XI, XII, or XIII:
  • the compound of Formula I, or pharmaceutically acceptable salt thereof is of the structural Formula XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, xxvn, or XXVIII:
  • the compound of Formula I is of the structural Formula XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXVII:
  • R 3 in the compound of any one of Formulae I, II, III, iv, v, VII, VIII, ix, x, xi, xn, xm, xxi, xxn, xxm, xxiv, xxv, xxix, xxxi, XXXII, XXXIII, XXXIV, and XXXV or pharmaceutically acceptable salt thereof is selected from hydrogen, (Ci-C4)alkyl, hydroxyl, (Ci-C4)alkoxy, -(Ci-C4)alkylphenyl, and 4- to 6- membered heterocyclyl; or R 3 and R 4 are taken together on the same carbon atom to form a (C3-Ce)cycloalkyl, wherein the remaining variables are as described above for Formula I or the second embodiment.
  • R 4 in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, IX, X, XI, XII, XIII, XXI, XXII, XXIII, XXIV, XXV, XXIX, XXXI, XXII, XXXIII, XXXIV, and XXXV or pharmaceutically acceptable salt thereof is selected from hydrogen (Ci-C4)alkyl, and hydroxyl; or R 3 and R 4 are taken together on the same carbon atom to form a (C3-C6)cycloalkyl, wherein the remaining variables are as described above for Formula I or the second embodiment.
  • R 3 in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, IX, X, XI, XII, XIII, XXI, XXII, XXIII, XXIV, XXV, XXIX, XXXI, XXII, XXXIII, XXXIV, and XXXV or pharmaceutically acceptable salt thereof is selected from hydrogen, (Ci-C2)alkyl, hydroxyl, (Ci-C2)alkoxy, benzyl, and azetidinyl; or R 3 and R 4 are taken together on the same carbon atom to form a cyclopropyl, wherein the remaining variables are as described above for Formula I or the second embodiment.
  • R 3 and R 4 in the compound of any one of Formulae I, II, HI, IV, V, VII, VIII, IX, X, XI, XII, XIII, XXI, XXII, XXIII, XXIV, XXV, XXIX, XXXI, xxxn, xxxm, XXXIV, and XXXV or pharmaceutically acceptable salt thereof are hydrogen, wherein the remaining variables are as described above for Formula I or the second embodiment.
  • R 2 in the compound of any one of Formulae I, II, III, IV, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, XXII, XXIII, XIV, XXV, XXVI, XXVII, XXVIII, XXIX, XX, XXI, XXII, xxxm XXXIV, XXXV, XXXVI, or XXVII or pharmaceutically acceptable salt thereof is selected from hydrogen and hydroxyl, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth embodiments.
  • R 2 in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XX, XXI, XXII, xxxm XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is hydrogen, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth embodiments.
  • R 5 in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, IX, X, XI, XII, xm, XIV, XV, XVI, XVI’, XVII, XVIII, VIII’, XX, XI, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XX, XXI, XXII, xxxm XXXIV, XXXV, XXXVI, or XXXVII is hydrogen, wherein the remaining variables are as described above for Formula I or any one of the second, eighth and/or ninth embodiments.
  • R 1 in the compound of any one of Formulae I, II, III, iv, v, vii, vm, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, xxxn, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from 8- to 10-membered fused bicyclic heteroaryl and aryl, each of which are substituted with -CR la R 2a P(O)OR lb OR 2b or -CR la R 2a P(O)[OR lb ][NH(AA
  • R 1 in the compound of any one of Formulae I, H, HI, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXI, xxxn, XXXIII XXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from benzothiophenyl, indolyl, and naphthalenyl, each of which are substituted with -CR la R 2a P(O)OR lb OR 2b or - CR la R 2a P(O)
  • XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVH or pharmaceutically acceptable salt thereof is selected from, remaining variables are as described above for Formula I or any one of the second and/or eighth to tenth embodiments.
  • R la in the compound of any one of Formulae I, II, III, iv, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvni, xxix, xxx, xxxi, xxxn, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is hydrogen and R 2a is fluoro or R la is fluoro and R 2a is fluoro, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to eleventh embodiments.
  • R la in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XX, XXI, XXII, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is fluoro and R 2a is fluoro, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to eleventh embodiments.
  • R lb and R 2b in the compound of any one of Formulae i, ii, in, iv, v, vii, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, XXII, XXIII XXXIV, XXXV, XXXVI, or XXXVU or pharmaceutically acceptable salt thereof are each independently selected from hydrogen, (Ci-C4)alkyl, -[(Ci-C 4 )alkyl]-OC(O)- [(Ci-C 4 )alkyl], -[(Ci-C4)alkyl, -[(Ci-C 4
  • R lb and R 2b in the compound of any one of Formulae I, II, in, IV, V, VH, VIII, VIII’, IX, X, XI, XII, XIII, xiv, xv, xvi, xvi’, XVII, xvni, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, XXVIII, XXIX, xxx, xxxi, xxxn, xxxm XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof are each -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl] , wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to eleventh embodiments.
  • R lb and R 2b in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, viii’, ix, x, xi, XII, xm, xiv, xv, xvi, xvr, xvn, xvm, xx, xxi, xxn, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XX, XXI, XXII, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof are each hydrogen, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to eleventh embodiments.
  • -CR la R 2a P(O)OR lb OR 2b in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, XVII, XXVIII, XXIX, XX, XXI, XXII, XXIII XXXIV, XXXV, XXXVI, or pharmaceutically acceptable salt thereof is selected from
  • R Q in the compound of any one of Formulae I, II, III, iv, v, vii, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, XXIII, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, xxxn, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is cyano or 5- to 7-membered heteroaryl, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to fourteenth embodiments.
  • R Q in the compound of any one of Formulae i, ii, in, iv, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, XX, XXI, XXII, XXIII, xxiv, xxv, xxvi, xxvn, xxvm, XXIX, xxx, XXXI, XXII, XXIII XXXIV, XXXV, XXXVI, or XXXVH or pharmaceutically acceptable salt thereof is cyano or pyridinyl, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to fourteenth embodiments.
  • R 12 in the compound of any one of Formulae I, II, III, iv, v, vii, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, xxxn, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from -NHC(O)R 10C E, -OR 10C E, phenyl, pyridinyl, and pyridin-2(lH)-one, each substituted with R 10C E, -OR 10C E, -NH R 10C E, or
  • R 10C in the compound of any one of Formulae I, II, in, iv, v, vii, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, xxxn, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from (Ci-Cio)alkylene and (C2-Cio)alkynelene each optionally substituted with one or more groups selected from halo and oxo, and wherein said (Ci-Ce)alkylene and (C2- Cio)alky
  • R 10C in the compound of any one of Formulae I, H, HI, IV, V, VII, VHI, VIII’, IX, X, XI, XII, xm, xiv, xv, xvi, xvi’, XVII, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, XXIX, XXXI, XXII, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from (Ci-Cio)alkylene, (C2- Cio)alkynelene, -(CH2) m C(O)NH[(CH 2 )O]v(CH 2 )n, -(CH2)O[(CH 2 )
  • R 10C in the compound of any one of Formulae I, II, HI, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, xxn, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXI, XXII, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from ein the asterisk indicates the position to which E is attached, and wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to sixteenth embodiments.
  • E in the compound of any one of Formulae I, II, in, iv, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, XXIII, xxiv, xxv, xxvi, xxvn, xxvni, xxix, xxx, xxxi, xxxn, XXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from a CRBN, VHL, IAP, or MDM2 based E3 binder, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to seventeenth embodiments.
  • E in the compound of any one of Formulae I, II, HI, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, xxn, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XX, XXI, XXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected
  • Y and Y 1 are each independently is O or CH2;
  • D is O, NH, or a bond
  • U is absent or C(O);
  • R is halo or cyano, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to seventeenth embodiments.
  • the compounds and compositions described herein are generally useful for modulating the activity of STAT proteins, in particular STAT3 and/or STAT6.
  • the compounds, pharmaceutical acceptable salts, and pharmaceutical compositions described herein degrade STAT3 and/or STAT6.
  • the compounds and pharmaceutical compositions described herein are useful in a condition responsive to the modulation (or degradation) of STAT3 and/or STAT6.
  • methods of treating a condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6 in a subject comprising administering to a subject in need thereof, a therapeutically effective amount of a compound described herein, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a disclosed compound or pharmaceutically acceptable salt thereof.
  • a compound described herein, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a disclosed compound or pharmaceutically acceptable salt thereof for the manufacture of a medicament for treating a condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6.
  • a compound described herein, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a disclosed compound or pharmaceutically acceptable salt thereof for use in treating a condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6.
  • the condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6 include, but are not limited to, cancer, a neurodegenative disorder, a viral disease, an autoimmune disease, an inflammatory disorder, a hereditary disorder, a hormone-related disease, a metabolic disorder, conditions associated with organ transplantation, immunodeficiency disorders, a destructive bone disorder, a proliferative disorder, an infectious disease, a condition associated with cell death, thrombin-induced platelet aggregation, liver disease, pathologic immune conditions involving T cell activation, a cardiovascular disorder, or a CNS disorder.
  • cancer e.g., cancer, a neurodegenative disorder, a viral disease, an autoimmune disease, an inflammatory disorder, a hereditary disorder, a hormone-related disease, a metabolic disorder, conditions associated with organ transplantation, immunodeficiency disorders, a destructive bone disorder, a proliferative disorder, an infectious disease, a condition associated with cell death, thrombin-
  • condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6 include, but are not limited to, cancer (see, e.g., Turkson & Jove, Oncogene 2000, 19:6613-6626), diabetes (see. e.g., Gurzov et al., FEBS 2016, 283:3002), cardiovascular disease (see, e.g., Grote et al., Vase. Pharmacol. 2005, 43:2005), viral disease (see, e.g., Gao et al., J Hepatol.
  • cancer see, e.g., Turkson & Jove, Oncogene 2000, 19:6613-6626
  • diabetes see. e.g., Gurzov et al., FEBS 2016, 283:3002
  • cardiovascular disease see, e.g., Grote et al., Vase. Pharmacol. 2005, 43:2005
  • viral disease see, e.g., Gao et
  • autoimmune diseases such as lupus (see, e.g., Goropevsek et al., Clin. Rev. Alleg. & Immun. 2017, 52(2): 164), and rheumatoid arthritis (see, e.g., Walker & Smith, J. Rheumat. 2005, 32(9): 1650), autoinflammatory syndromes (see, e.g., Rauch et al., Jak-Stat 2013, 2(l):e23820), atherosclerosis (see, e.g., Ortiz-Munoz et al., Arterio., Thromho., Vase. Bio.
  • Proliferative disorders include, but are not limited to a benign or malignant tumor, solid tumor, liquid tumor, carcinoma of the brain, kidney, liver, adrenal gland, bladder, breast, stomach, gastric tumors, ovaries, colon, rectum, prostate, pancreas, lung, vagina, cervix, testis, genitourinary tract, esophagus, larynx, skin, bone or thyroid, sarcoma, glioblastomas, neuroblastomas, multiple myeloma, gastrointestinal cancer, especially colon carcinoma or colorectal adenoma, a tumor of the neck and head, an epidermal hyperproliferation, psoriasis, prostate hyperplasia, a neoplasia, a neoplasia of epithelial character, adenoma, adenocarcinoma, keratoacanthoma, epidermoid carcinoma, large cell carcinoma, non-small- cell lung carcinoma,
  • the cancer to be treated is selected from glioma, breast cancer, prostate cancer, head and neck squamous cell carcinoma, skin melanomas, ovarian cancer, malignant peripheral nerve sheath tumors (MPNST), and pancreatic cancer.
  • the cancer to be treated is cancer selected from glioma, breast cancer, prostate cancer, head and neck squamous cell carcinoma, skin melanomas, ovarian cancer, malignant peripheral nerve shealth tumors (MPNST), pancreatic cancer, non-small cell lung cancer (NSCLC) including EGFR-mutant NSCLC, urothelial cancer, liver cancer, bile duct cancer, kidney cancer, colon cancer, esophageal cancer, gastric cancer, gastrointestinal stromal tumors, and hematological malignancies include lymphomas, leukemias, myelomas, myeloproliferative neoplasms and myelodysplastic syndromes.
  • NSCLC non-small cell lung cancer
  • the cancer is selected from solid tumors (e.g., prostate cancer, renal cancer, hepatic cancer, pancreatic cancer, gastric cancer, breast cancer, lung cancer, cancers of the head and neck, thyroid cancer, glioblastoma, Kaposi Is] sarcoma, Castleman® disease, uterine leiomyosarcoma, melanoma etc.), hematological cancers (e.g., lymphoma, leukemia such as acute lymphoblastic leukemia (ALL), acute myelogenous leukemia (AML) or multiple myeloma), and skin cancer such as cutaneous T-cell lymphoma (CTCL) and cutaneous B-cell lymphoma.
  • CTCLs include Sezary syndrome and mycosis fungoides.
  • Inflammatory or obstructive airways diseases include asthma of whatever type or genesis including both intrinsic (non-allergic) asthma and extrinsic (allergic) asthma, mild asthma, moderate asthma, severe asthma, bronchitic asthma, exercise-induced asthma, occupational asthma and asthma induced following bacterial infection.
  • Treatment of asthma is also to be understood as embracing treatment of subjects, e.g. of less than 4 or 5 years of age, exhibiting wheezing symptoms and diagnosed or diagnosable as "whez infants", an established patient category of major medical concern and now often identified as incipient or early-phase asthmatics.
  • Compounds, salts, and compositions described herein are also useful in the treatment of heteroimmune diseases including, but are not limited to, graft versus host disease, transplantation, transfusion, anaphylaxis, allergies (e.g., allergies to plant pollens, latex, drugs, foods, insect poisons, animal hair, animal dander, dust mites, or cockroach calyx), type I hypersensitivity, allergic conjunctivitis, allergic rhinitis, and atopic dermatitis.
  • heteroimmune diseases including, but are not limited to, graft versus host disease, transplantation, transfusion, anaphylaxis, allergies (e.g., allergies to plant pollens, latex, drugs, foods, insect poisons, animal hair, animal dander, dust mites, or cockroach calyx), type I hypersensitivity, allergic conjunctivitis, allergic rhinitis, and atopic dermatitis.
  • Compounds, salts, and compositions described herein are also useful in the treatment of other inflammatory or obstructive airways diseases and conditions to which the present invention is applicable and include acute lung injury (ALI), adult/acute respiratory distress syndrome (ARDS), chronic obstructive pulmonary, airways or lung disease (COPD, COAD or COLD), including chronic bronchitis or dyspnea associated therewith, emphysema, as well as exacerbation of airways hyperreactivity consequent to other drug therapy, in particular other inhaled drug therapy.
  • ALI acute lung injury
  • ARDS adult/acute respiratory distress syndrome
  • COAD chronic obstructive pulmonary, airways or lung disease
  • COAD chronic obstructive pulmonary, airways or lung disease
  • exacerbation of airways hyperreactivity consequent to other drug therapy in particular other inhaled drug therapy.
  • Compounds, salts, and compositions described herein are also useful in the treatment of bronchitis including, but not limited to, acute, arachidic, catarrhal, croupus, chronic or phthinoid bronchitis.
  • Compounds, salts, and compositions described herein are also useful in the treatment of pneumoconiosis (an inflammatory, commonly occupational, disease of the lungs, frequently accompanied by airways obstruction, whether chronic or acute, and occasioned by repeated inhalation of dusts) of whatever type or genesis, including, for example, aluminosis, anthracosis, asbestosis, chalicosis, ptilosis, siderosis, silicosis, tabacosis and byssinosis.
  • Compounds, salts, and compositions described herein are also useful in the treatment of inflammatory or allergic conditions of the skin, for example psoriasis, contact dermatitis, atopic dermatitis, alopecia areata, erythema multiforma, dermatitis herpetiformis, scleroderma, vitiligo, hypersensitivity angiitis, urticaria, bullous pemphigoid, lupus erythematosus, systemic lupus erythematosus, pemphigus vulgaris, pemphigus foliaceus, paraneoplastic pemphigus, epidermolysis bullosa acquisita, acne vulgaris, and other inflammatory or allergic conditions of the skin.
  • Compounds, salts, and compositions described herein are also useful in the treatment of other diseases or conditions, such as diseases or conditions having an inflammatory component, for example, treatment of diseases and conditions of the eye such as ocular allergy, conjunctivitis, keratoconjunctivitis sicca, and vernal conjunctivitis, diseases affecting the nose including allergic rhinitis, and inflammatory disease in which autoimmune reactions are implicated or having an autoimmune component or etiology, including autoimmune hematological disorders (e.g.
  • hemolytic anemia aplastic anemia, pure red cell anemia and idiopathic thrombocytopenia
  • systemic lupus erythematosus rheumatoid arthritis, polychondritis, scleroderma, Wegener granulamatosis, dermatomyositis, chronic active hepatitis, myasthenia gravis, Steven-Johnson syndrome, idiopathic sprue, autoimmune inflammatory bowel disease (e.g.
  • ulcerative colitis and Crohn Is] disease irritable bowel syndrome, celiac disease, periodontitis, hyaline membrane disease, kidney disease, glomerular disease, alcoholic liver disease, multiple sclerosis, endocrine opthalmopathy, Gravels] disease, sarcoidosis, alveolitis, chronic hypersensitivity pneumonitis, multiple sclerosis, primary biliary cirrhosis, uveitis (anterior and posterior), Sjogren’s syndrome, keratoconjunctivitis sicca and vernal keratoconjunctivitis, interstitial lung fibrosis, psoriatic arthritis, systemic juvenile idiopathic arthritis, cryopyrin-associated periodic syndrome, nephritis, vasculitis, diverticulitis, interstitial cystitis, glomerulonephritis (with and without nephrotic syndrome, e.g.
  • idiopathic nephrotic syndrome or minal change nephropathy chronic granulomatous disease, endometriosis, leptospiriosis renal disease, glaucoma, retinal disease, ageing, headache, pain, complex regional pain syndrome, cardiac hypertrophy, musclewasting, catabolic disorders, obesity, fetal growth retardation, hyperchlolesterolemia, heart disease, chronic heart failure, mesothelioma, anhidrotic ectodermal dysplasia, Behcet’s disease, incontinentia pigmenti, Paget’s disease, pancreatitis, hereditary periodic fever syndrome, asthma (allergic and non- allergic, mild, moderate, severe, bronchitic, and exercise-induced), acute lung injury, acute respiratory distress syndrome, eosinophilia, hypersensitivities, anaphylaxis, nasal sinusitis, ocular allergy, silica induced diseases, COPD (reduction of damage, airways inflammation, bronchial hyperre
  • cardiovascular diseases which can be treated according to the present methods include, but are not limited to, restenosis, cardiomegaly, atherosclerosis, myocardial infarction, ischemic stroke, congestive heart failure, angina pectoris, reocclusion after angioplasty, restenosis after angioplasty, reocclusion after aortocoronary bypass, restenosis after aortocoronary bypass, stroke, transitory ischemia, a peripheral arterial occlusive disorder, pulmonary embolism, and deep venous thrombosis.
  • the neurodegenerative disease which can be treated according to the present methods include, but are not limited to, Alzheimer® disease, Parkinson® disease, amyotrophic lateral sclerosis, Huntington® disease, cerebral ischemia, and neurodegenerative disease caused by traumatic injury, glutamate neurotoxicity, hypoxia, epilepsy, treatment of diabetes, metabolic syndrome, obesity, organ transplantation and graft versus host disease.
  • a pharmaceutical composition described herein is formulated for administration to a patient in need of such composition.
  • Pharmaceutical compositions described herein may be administered orally, parenterally, by inhalation spray, topically, rectally, nasally, buccally, vaginally or via an implanted reservoir.
  • parenteral as used herein includes subcutaneous, intravenous, intramuscular, intra-articular, intra-synovial, intrasternal, intrathecal, intrahepatic, intralesional and intracranial injection or infusion techniques.
  • the compositions are administered orally, intraperitoneally or intravenously.
  • Sterile injectable forms of the pharmaceutical compositions described herein may be aqueous or oleaginous suspension. These suspensions may be formulated according to techniques known in the art using suitable dispersing or wetting agents and suspending agents.
  • the pharmaceutical compositions are administered orally.
  • a specific dosage and treatment regimen for any particular patient will depend upon a variety of factors, including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, rate of excretion, drug combination, and the judgment of the treating physician and the severity of the particular disease being treated.
  • the amount of a compound described herein in the composition will also depend upon the particular compound in the pharmaceutical composition.
  • STEP C tert-butyl 3-(4-(4-oxobutoxy)pyridin-3-yl)azetidine-l -carboxylate
  • STEP D tert-butyl 3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl) carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)amino)butoxy)pyridin-3- yl)azetidine-l -carboxylate
  • STEP E (2S,4R)-l-((S)-2-((4-((3-(azetidm-3-yl)pyridin-4-yl)oxy)butyl)ammo)- 3,3- dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2- carboxamide
  • STEP F tert-butyl ((3S, 6S, 9aS)-3-(3-(4-(4-(((S)-l-((2S, 4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)amino)butoxy)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a azepin- 6-yl) carbamate
  • STEP H S,S ⁇ (((diftuoro(2-(((3S, 6S, 9aS)-3-(3-(4-(4-(((S)-l-((2S, 4R)-4-hydroxy- 2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)amino)butoxy)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a ]azepin-6-y I) carbamoyl) benzo [b ]thiophen-5-yl)methyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1- diyl)) dibutanethioate
  • STEP K 4-(4-(2, 6-dioxopiperidin-3-yl)phenoxy)butyl methane sulfonate
  • 6-dione 100 mg, 0.36 mmol, 1.0 eq.
  • DCM 3 mL
  • TEA 55 mg, 0.54 mmol, 1.5 eq.
  • MsCl 50 mg, 0.43 mmol, 1.2 eq.
  • STEP L trans-tert-butyl 3-cyano-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-l -carboxylate
  • STEP M trans-4-(3-(4-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-3-carbonitrile
  • STEP O trans- 1-((3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2-a]azocine- 3-carbonyl)-4-(3-(4-(4-(2,6-dioxopiperidin-3-yl)phenoxy)butoxy)phenyl)pyrrolidine-3- carbonitrile
  • STEP P trans-((2-(((3S, 6S, 10aS)-3-(3-cyano-4-(3-(4-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid
  • reaction mixture was stirred at 25 °C for 0.5 hrs. After completion, the reaction mixture was purified by prep-HPLC to afford trans-((2- (((3S,6S,10aS)-3-(3-cyano-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound s, 15 mg, 16 pmol, 24%) as a white solid.
  • reaction mixture was quenched with Na2SOs (40 mL, saturated aqueous solution) and extracted with EtOAc (30 mL x 2). The combined organic layers were washed with brine (20 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford 8-iodooct-l-yne (3.1 g, 13.1 mmol, 83%) as a light oil.
  • STEP B tert-butyl (R)-6-(l-(oct-7-yn-l-yl)-2-oxo-l,2-dihydropyridm-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carboxylate
  • reaction mixture was stirred at 80 °C overnight under N2.
  • the reaction mixture was diluted with H2O (20 mL) and extracted with EtOAc (20 mL x 2). The combined organic layers were washed with brine (10 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure.
  • STEP D 3-(l-oxo-4-(8-(2-oxo-4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H) ⁇ yl)oct-l-yn-l-yl)isoindolin-2-yl)piperidine-2, 6-dione
  • STEP E tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oct- 7-yn-l-yl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4- carbonyl)-5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
  • STEP F 3-(4-(8-( 4-( (R)-4-(( 3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1,2- a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin-l(2H)-yl)oct-l-yn-l-yl)-l- oxoisoindolin-2-yl)piperidine-2, 6-dione
  • STEP G ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oct- 7-yn-l-yl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4- carbonyl)-5 oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphonic acid
  • STEP D l-(3-(l -(tert-butoxycarbonyl)azetidin-3-yl)pyridin-4-yl)piperidine-4- carboxylic acid
  • STEP E tert-butyl 3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)carbamoyl)piperidin-l- yl)pyridin-3-yl)azetidine-l -carboxylate
  • STEP F l-(3-(azetidin-3-yl)pyridin-4-yl)-N-((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)piperidine-4-carboxamide
  • STEP G tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)carbamoyl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamate
  • STEP E tert-butyl 3-(4-(2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)ethoxy)pyridin-3- yl)azetidine-l -carboxylate
  • STEP G tert-butyl ((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a azepin- 6-yl) carbamate
  • reaction mixture was stirred at room temperature overnight. After completion, the reaction mixture was diluted with H2O (30 mL) and extracted with DCM (30 mL x 2). The organic layers were combined and washed with brine (20 mL), dried over anhydrous ISfeSCU, and concentrated under reduced pressure.
  • STEP H 3-(4-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)oxy)ethoxy)phenyl)piperidine-2, 6-dione
  • tert-butyl ((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamate (40 mg, 59 pmol, 1.0 eq.) in DCM (1.5
  • STEP J S,SE((((((2-(((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2, 1 -diyl)) dibutanethioate
  • STEP D tert-butyl 3-(4-(2-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carboxylate
  • STEP E tert-butyl 3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carboxylate
  • STEP F 3-(4-(2-(2-((3-(azetidin-3-yl)pyridm-4- yl)oxy)ethoxy)ethoxy)phenyl)piperidine-2, 6-dione
  • STEP G tert-butyl ((3S,6S,9aS)-3-(3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamate
  • reaction mixture was stirred at room temperature overnight. After completion, the reaction mixture was diluted with H2O (30 mL) and extracted with DCM (30 mL x 2). The organic layers were combined and washed with brine (20 mL), dried over anhydrous ISfeSCU, and concentrated under reduced pressure.
  • STEP H 3-(4-(2-(2-((3-( l-((3S,6S,9aS)-6-amino-5-oxooctahydro- lH-pyrrolo[ 1 ,2- a ]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl) oxyjelhoxyjelhoxy) phenyl) pi peridi ne-2, 6- dione
  • STEP B rac-tert-butyl (3S,4R)-3-cyano-4-(3-(hept-6-yn-l- yloxy)phenyl)pyrrolidine-l -carboxylate
  • hept-6-yn-l-yl methanesulfonate 800 mg, 4.2 mmol, 1.0 eq.
  • rac-tert-butyl (3 S,4R)-3-cyano-4-(3-hydroxyphenyl)pyrrolidine-l -carboxylate (1.21 g, 4.2 mmol, 1.0 eq.) in DMF (10 mL ) was added K2CO3 (1.15 g, 8,4 mmol, 2.0 eq.).
  • STEP C rac-tert-butyl (3S,4R)-3-cyano-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carboxylate
  • STEP D rac-(3S,4R)-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-3-carbonitrile
  • STEP E tert-butyl ((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-((7-(2-(2,6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carbonyl)- 5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
  • STEP F (rel-3S, 4R)-l-( ( 3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a ]azocine-3-carbonyl)-4-( 3-(( 7-(2-( 2, 6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn- l-yl)oxy)phenyl)pyrrolidine-3-carbonitrile
  • STEP G ((2-(((3S, 6S, 10aS)-3-((rel-3S, 4R)-3-cyano-4-(3-((7-(2-(2, 6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carbonyl)-
  • STEP H S,S ⁇ ((((2-(((3S, 6S, 10aS)-3-((rel-3S, 4R)-3-cyano-4-(3-((7-(2-(2, 6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carbonyl)-
  • STEP B rac-tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2- hydroxyethoxy)ethoxy)phenyl)pyrrolidine-l-carboxylate
  • STEP D rac-tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)- l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carboxylate
  • STEP F tert-butyl ((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-(2-(2-((2-(2,6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carbonyl)-
  • STEP G (rel-3S,4R)-l-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2- a ]azocine-3-carbonyl)-4-( 3-(2-( 2-((2-(2, 6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-3-carbonitrile
  • STEP I ((2-(((3S,6S,10aS)-3-((rel-3S,4R)- ⁇ -cyano-4-(3-(2-(2-((2-(2,6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carbonyl)-
  • STEP B 2, 6-bis(benzyloxy)-3-(4-((5-(benzyloxy)pentyl)oxy)phenyl)pyridine
  • 5-(benzyloxy)pentyl methanesulfonate 3 g, 11.0 mmol, 1 eq.
  • 4-(2,6-bis(benzyloxy)pyridin-3-yl)phenol 4.22 g, 11.03 mmol, 1.0 eq.
  • DMF 100 mL
  • DMAP 134 mg, 1.10 mmol, 0.1 eq.
  • K2CO3 3.04 g, 22.1 mmol, 2 eq.
  • STEP D 5-(4-(2, 6-dioxopiperidin-3-yl)phenoxy)pentyl methane sulfonate
  • STEP F tert-butyl (6R)-6-(l-(5-(4-(2, 6-dioxopiperidin-3-yl)phenoxy)pentyl)-2- oxo-1, 2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate and tert-butyl (6R)-6-(2- ((5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4- carboxylate
  • STEP G 3-(4-((5-(2-oxo-4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H) ⁇ yl)pentyl)oxy)phenyl)piperidine-2, 6-dione
  • STEP H tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3- yl)phenoxy)pentyl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
  • STEP I 3-( 4-((5-( 4-( (R)-4-( 3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin-l(2H)- yl)pentyl)oxy)phenyl)piperidine-2, 6-dione
  • STEP J ((2-( ((3S, 6S, 10aS)-3-( ( 6R)-6-( 1 -(5-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)pentyl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphonic acid
  • reaction mixture was stirred at room temperature for 0.5 hrs. After completion, the reaction mixture was purified by prep-HPLC to afford ((2-(((3S,6S,10aS)-3- ((6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 17, 32.7 mg, 34 pmol, 49%) as a white solid.
  • STEP K S,S ⁇ ((((2-(((3S, 6S, 10aS)-3-((6R)-6-(l-(5-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)pentyl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate
  • STEP L 3-(4-((5-((4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-2- yl)oxy)pentyl)oxy)phenyl)piperidine-2, 6-dione
  • STEP M tert-butyl ((3S,6S,10aS)-3-((6R)-6-(2-((5-(4-(2,6-dioxopiperidin-3- yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
  • reaction mixture was purified by C18 column to afford tert-butyl ((3S,6S,10aS)-3-((6R)-6-(2- ((5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (43 mg, 56 pmol, 46%) as a white solid.
  • LCMS (ESI) m/z 772 [M+H] + .
  • STEP N 3-(4-((5-((4-( (R)-4-((3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a ]azocine-3-carbonyl)-4-azaspiro[ 2.4 ]heptan-6-yl)pyridin-2- yl)oxy)pentyl)oxy)phenyl)piperidine-2, 6-dione [00348] To a solution of tert-butyl ((3S,6S,10aS)-3-((6R)-6-(2-((5-(4-(2,6-dioxopiperidin- 3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5- oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (43 mg,
  • STEP O ((2-(((3S,6S,10aS)-3-((6R)-6-(2-((5-(4-(2,6-dioxopiperidin-3- yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphonic acid
  • reaction mixture was stirred at room temperature for 0.5 hrs. After completion, the reaction mixture was purified by prep-HPLC to afford ((2-(((3S,6S,10aS)-3- ((6R)-6-(2-((5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4- azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (TFA salt) (Compound 19, 20.8 mg, 22 pmol, 43% ) as a white solid.
  • STEP B tert-butyl 3-(4-(methyl(2-((methylsulfonyl)oxy)ethyl)amino)pyridin-3- yl)azetidine-l -carboxylate
  • STEP C tert-butyl 3-(4-((2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carboxylate
  • STEP D tert-butyl 3-(4-((2-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carboxylate
  • STEP E 3-(4-(2-((3-(azetidin-3-yl)pyridin-4- yl)(methyl)amino)ethoxy)phenyl)piperidine-2, 6-dione
  • STEP F tert-butyl ((3S,6S,9aS)-3-(3-(4-((2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamate
  • STEP H S, S /((( ((2-((((3S, 6S, 9aS)-3-(3-( 4-( ( 2-( 4-(2, 6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate
  • STEP F N-(4-methoxybenzyl)-5-oxotetrahydrojuran-2-carboxamide
  • STEP H l-(4-methoxybenzyl)-2,6-dioxopiperidin-3-yl trifluoromethane sulfonate
  • 3-hydroxy-l-[(4-methoxyphenyl)methyl]piperidine-2, 6-dione (5 g, 20.0 mmol, 1 eq.) in DCM (50 mL) were added pyridine (3.16 g, 40.0 mmol, 2 eq.) and trifluoromethanesulfonic acid anhydride (6.28 g, 20.0 mmol, 1 eq.) at 0 °C.
  • pyridine 3.16 g, 40.0 mmol, 2 eq.
  • trifluoromethanesulfonic acid anhydride (6.28 g, 20.0 mmol, 1 eq.
  • STEP I tert-butyl 4-(3-amino-4-nitrophenyl)piperazine-l -carboxylate
  • K2CO3 5.29 g, 38.4 mmol, 2 eq.
  • tert-butyl piperazine- 1 -carboxylate 3.57 g, 19.2 mmol, 1 eq.
  • STEP K tert-butyl 4-(4-amino-3-((4-methoxybenzyl)amino)phenyl)piperazine-l- carboxylate
  • STEP L tert-butyl 4-(3-(4-methoxybenzyl)-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-5-yl)piperazine-l -carboxylate
  • STEP M tert-butyl 4-(3-(4-methoxybenzyl)-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-5-yl)piperazine-l -carboxylate
  • STEP N l-(4-methoxybenzyl)-3-(3-(4-methoxybenzyl)-2-oxo-5-(piperazin-l-yl)- 2, 3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione
  • STEP P (rel-3S, 4R)-4-( 3-( 4-( 1 -(2, 6-dioxopiperidin-3-yl)-2-oxo-2, 3-dihydro-lH- benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-3-carbonitrile
  • STEP R (rel-3S, 4R)-1-((3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a]azocine-3-carbonyl)-4-(3-(4-(l-(2,6-dioxopiperidin-3-yl)-2-oxo-2, 3-dihydro-lH- benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-3-carbonitrile
  • STEP T S,S ⁇ ((((2-(((3S, 6S, 10aS)-3-((rel-3S, 4R)-3-cyano-4-(3-(4-(l-(2, 6- dioxopiperidin-3-yl)-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l- yl)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl) carbamoyl) benzo [b ]thiophen-5-yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1- diyl)) dibutanethioate
  • STEP B tert-butyl (R)-6-(2-oxo-l-(l-((2- (trimethylsilyl) ethoxy) carbonyl)piperidin-4-yl)-l,2-dihydropyridin-4-yl) -4- azaspiro[ 2.4 ]heptane-4-carboxylate
  • STEP E tert-butyl (R)-6-(l-(l-(3-amino-4-nitrophenyl)piperidm-4-yl)-2-oxo-l ,2- dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carboxylate
  • STEP F tert-butyl (R)-6-(l-(l-(4-amino-3-((4- methoxybenzyl)amino)phenyl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carboxylate
  • STEP G tert-butyl (R)-6-(l-(l-(3-(4-methoxybenzyl)-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carboxylate
  • STEP H tert-butyl (6R)-6-(l-(l-(3-(4-methoxybenzyl)-l-(l-(4-methoxybenzyl)- 2,6-dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo- 1, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carboxylate
  • reaction mixture was stirred at 0 °C for 0.5 hrs.
  • l-(4-methoxybenzyl)-2,6-dioxopiperidin-3- yl trifluoromethanesulfonate 172 mg, 0.44 mmol, 2 eq.
  • the reaction was warmed up to 20 °C and stirred for 1 hr.
  • the reaction mixture was diluted with H2O (30 mL), extracted with EtOAc (20 mL x 3). The organic layers were combined and washed with brine (50 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure.
  • STEP J tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(l-(l-(2,6-dioxopiperidin-3-yl)-2- oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate [00443] To a solution of (3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (22 mg, 66 pmol, 1 eq.) and HA
  • STEP K 3-(5-( 4-( 4-( (R)-4-( 3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin-l(2H)-yl)piperidin-l-yl)-2- oxo-2, 3-dihydro-lH-benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
  • STEP L ((2-( ( 3S, 6S, 10aS)-3-( 6R)-6-( !-(!-(! -(2, 6-dioxopiperidin-3-yl)-2-oxo- 2, 3-dihydro-lH-benzo[ d]imidazol-5-yl)piperidin-4-yl) -2-oxo-l, 2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carbonyl)-5-oxodecahydropyrrolo[ 1, 2 -a ]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid
  • STEP M S,S/((((((2-(((3S, 6S, 10aS)-3-((6R)-6-(l-(l-(l-(2, 6-dioxopiperidin-3-yl) ⁇ 2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl) ⁇ 4-azaspiro[ 2.4 ]heptane-4-carbonyl)-5-oxodecahydropyrrolo[ 1, 2-a]azocin-6- yl) carbamoyl) benzo [b ]thiophen-5-yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1- diyl)) dibutanethioate
  • STEP A tert-butyl (R)-6-(l-(2-(2-(2-(2-(2-(2-hydroxyethoxy)ethoxy)ethyl)-2-oxo-l,2- dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carboxylate
  • STEP B tert-butyl (R)-6-(l-(2-(2-(2-((methylsulfonyl)oxy)ethoxy)ethyl)-2- oxo-1, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carboxylate
  • STEP C tert-butyl (6R)-6-(l-(2-(2-(2-((2-(2-((2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carboxylate
  • STEP D 3-(l-oxo-4-(2-(2-(2-(2-(2-oxo-4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin- l(2H)-yl)ethoxy)ethoxy)ethoxy)isoindolin-2-yl)piperidine-2, 6-dione
  • STEP F 3-(4-(2-(2-(2-(2-(4-((R)-4-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[ 1, 2-a]azocine-3-carbonyl)-4-azaspiro[2.4 ]heptan-6-yl)-2-oxopyridin- l(2H)-yl)ethoxy)ethoxy)ethoxy)-l-oxoisoindolin-2-yl)piperidine-2, 6-dione
  • STEP G S,S ⁇ (((((2-(((3S,6S,10aS)-3-((6R)-6-(l-(2-(2-(2-(2-((2-(2,6-dioxopiperidin- 3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carbonyl)-5-oxodecahydropyrrolo[ 1, 2 -a ]azocin-6- yl) carbamoyl) benzo [b ]thiophen-5-yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1- diyl)) dibutanethioate
  • STEP H ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carbonyl)-5-oxodecahydropyrrolo[ 1, 2 -a ]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid
  • STEP B tert-butyl 3-(4-(4-(2-chloroacetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l- carboxylate [00479] To a solution of tert-butyl 3 -(4-(piperazin-l-yl)pyri din-3 -yl)azeti dine- 1- carb oxy late (0.9 g, 2.82 mmol, 1.0 eq.) in DCM (20 mL) was added 2 -chloroacetyl chloride(0.35 g, 3.1 mmol, 1.1 eq.) and the resulting mixture was stirred at room temperature for 2 hrs under N2.
  • STEP C tert-butyl 3-(4-(4-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l -carboxylate
  • STEP D tert-butyl 3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l -carboxylate
  • STEP E 3-(4-(2-(4-(3-(azetidm-3-yl)pyridin-4-yl)piperazin-l-yl)-2- oxoethoxy)phenyl)piperidine-2, 6-dione
  • STEP F tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamate
  • STEP G 3-(4-(2-(4-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperazin-l-yl)-2- oxoethoxy)phenyl)piperidine-2, 6-dione
  • STEP H ( ( 2-( ( ( 3S, 6S, 9aS)-3-(3-( 4-( 4-(2-( 4-(2, 6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid [00491] To a solution of 3-(4-(2-(4-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperazin-l-y
  • Step 1 Preparation of tert-butyl 3-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanoate
  • Step 2 Preparation of 3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanoic acid
  • Step 3 Preparation of tert-butyl 3-(3-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanamido)-3-(pyridin-2-yl)azetidine- 1-carboxylate
  • Step 4 Preparation of 3-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)-N-(3-(pyridin-2-yl)azetidin-3- yl)propanamide
  • Step 5 Preparation of tert-butyl ((3S, 6S, J0aR)-3-(3-(3-(2-(2-(2-((2-(2, 6- dioxopiperidin-3-yl)-l, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanamido)-3- (pyridin-2-yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo [ 1 ,2-a]azocin-6-yl)carbamate [00508] To a solution of 3- ⁇ 2-[2-(2- ⁇ [2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3-dihydro- lH-isoindol-4-yl]oxy ⁇ acetamido)ethoxy]ethoxy ⁇ -N-[3-(pyridin-2-y
  • Step 6 Preparation of N-(1-((3S,6S, 10aR)-6-amino-5-oxodecahydropyrrolo[ 1 ,2- a ]azocine-3-carbonyl)-3-(pyridin-2-yl)azetidin-3-yl) -3-( 2-(2-(2-( ( 2-( 2, 6-dioxopiperidin-3-yl) ⁇
  • Step 7 Preparation of ((2-(((3S,6S,10aR)-3-(3-(3-(2-(2-(2-((2-(2,6- dioxopiperidin-3-yl)-l, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanamido)-3- (pyridin-2-yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid [00512] To a solution ofN- ⁇ l-[(3S,6S,10aR)-6-amino-5-oxo-decahydropyrrolo[l,2- a]azocine-3-carbonyl]-3-(pyridin-2-yl)azet
  • Step 1 Preparation of 2-( 2-(2-((l -(tert-butoxycarbonyl) -3-(pyridin-2-yl)azetidin-
  • Step 2 Preparation of tert-butyl 3-(2-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l- ( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine-l-carboxylate
  • Step 3 Preparation of (2S,4R)-l-((S)-3,3-dimethyl-2-(2-(2-(2-oxo-2-((3-(pyridin- 2-yl)azetidin-3-yl)amino)ethoxy)ethoxy)acetamido)butanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide
  • Step 4 Preparation of tert-butyl ((3S,6S,10aR)-3-(3-(2-(2-(2-(((S)-l-((2S,4R)-4- hydroxy-2-( ( (S)-l-( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3- dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine- l-carbonyl)-5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
  • Step 5 Preparation of (2S,4R)-l-((S)-2-(2-(2-(2-(2-(2-((l-((3S,6S,10aR)-6-amino-5- oxodecahydropyrrolo[ 1, 2 -a ]azocine-3-carbonyl) -3-(pyridin-2-yl)azetidin-3-yl)amino)-2- oxoethoxy)ethoxy)acetamido)-3, 3-dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4-(4-methylthiazol- 5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide
  • Step 6 Preparation of (difluoro(2-(((3S,6S,10aR)-3-(3-(2-(2-(((S)-l-((2S,4R) ⁇
  • reaction solution was stirred at 25 °C for 1 hour to give a yellow solution.
  • the reaction mixture was concentrated under reduced pressure to give a residue.
  • the residue was purified by prep- HPLC (column: Wei ch Xtimate Cl 8 150 x 25 mm x 5 um; mobile phase: water (NH3H2O)- ACN; B%: 5% - 35%, 8 min).
  • Step 1 Preparation of tert-butyl 2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetate
  • Step 2 Preparation of 2-(2-(2-(2-((2-(2, 6-dioxopiperidin-3-yl)- 1 , 3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetic acid
  • Step 3 Preparation of tert-butyl 3-(2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine-l- carboxylate
  • Step 4 Preparation of 2-((2-(2, 6-dioxopiperidin-3-yl)-l , 3-dioxoisoindolin-4- yl)oxy)-N-(2-(2-(2-oxo-2-((3-(pyridin-2-yl)azetidin-3- y I) amino) ethoxy) ethoxy) ethyl) acetamide
  • Step 5 Preparation of tert-butyl ((3S, 6S,10aR)-3-(3-(2-(2-(2-(2-(2-(2-(2-(2-(2, 6- dioxopiperidin-3-yl)-l, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3- (pyridin-2-yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate [00537] To a solution of (3S,6S,10aR)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (20 mg, 61 pmol) in DMF (1 mL) was added HATU (35 mg, 92 pmol) and ethy
  • Step 6 Preparation of N-(1-((3S,6S, 10aR)-6-amino-5-oxodecahydropyrrolo[ 1 ,2- a ]azocine-3-carbonyl)-3-(pyridin-2-yl)azetidin-3-yl) -2-( 2-(2-(2-( ( 2-( 2, 6-dioxopiperidin-3-yl) ⁇ 1, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamide
  • Step 7 Preparation of ((2-(((3S, 6S, 10aR)-3-(3-(2-(2-(2-(2-((2-(2, 6- dioxopiperidin-3-yl)-l, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3- (pyridin-2-yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)dijluoromethyl)phosphonic acid
  • reaction mixture was concentrated under reduced pressure to give a residue and was purified by prep-HPLC (column: Welch Ultimate Cl 8 150 * 25 mm x 5 urn; mobile phase: water (TFA)-ACN]; B%: 15% - 45%, 10 min).
  • Step 1 Preparation of methyl 3-(2-(allyloxy)ethoxy)propanoate
  • Step 2 Preparation of 2-(2-(3-methoxy-3-oxopropoxy)ethoxy)acetic acid
  • ACN 4.0 mL
  • CHCI3 6.0 mL
  • NaICk 5.7 g, 27 mmol, 5 eq
  • RuCh 549 mg, 2.7 mmol, 0.5 eq
  • Step 3 Preparation of methyl 3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)propanoate
  • reaction was diluted with water (50 mL) and extracted with ethyl acetate (50 mL x 2), the combined organic layers were washed with saturated brine (40 mL x 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue.
  • Step 4 Preparation of 3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)propanoic acid [00550] To a solution of methyl 3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy
  • Step 5 Preparation of tert-butyl 3-(3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l- ( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyridin-2-yl)azetidine-l-carboxylate
  • Step 6 Preparation of (2S,4R)-l-((S)-3,3-dimethyl-2-(2-(2-(3-oxo-3-((3-(pyridin- 2-yl)azetidin-3-yl)amino)propoxy)ethoxy)acetamido) butanoyl)-4-hydroxy-N-((S)-l-( 4-( 4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide
  • Step 7 Preparation of tert-butyl ((3S,6S,10aR)-3-(3-(3-(2-(2-(((S)-l-((2S,4R)-4- hydroxy-2-( ( (S)-l-( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3- dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate
  • Step 8 Preparation of (2S,4R)-l-((S)-2-(2-(2-(3-((l-((3S,6S,10aR)-6-amino-5- oxodecahydropyrrolo[ 1, 2 -a ]azocine-3-carbonyl) -3-(pyridin-2-yl)azetidin-3-yl)amino)-3- oxopropoxy)ethoxy)acetamido)-3 , 3-dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide
  • Step 9 Preparation of (difluoro(2-(((3S,6S,10aR)-3-(3-(3-(2-(((S)-l-((2S,4R) ⁇ 4-hydroxy-2-( ( (S)-l-( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3- dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)methyl)phosphonic acid
  • Step 1 Preparation of l-(4-methoxybenzyl)-2, 6-dioxopiperidin-3-yl trifluoromethanesulfonate
  • Step 2 Preparation of 3-(5-bromo-3-methyl-2-oxo-2,3-dihydro-lH- benzo[ d]imidazol-l-yl)-l-( 4-methoxybenzyl)piperidine-2, 6-dione
  • Step 3 Preparation of 3-(5-bromo-3-methyl-2-oxo-2,3-dihydro-lH- benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
  • Step 4 Preparation of tert-butyl 3-(4-(4-(3-hydroxypropyl)piperidin-l-yl)pyridin- 3-yl)azetidine-l -carboxylate
  • Step 5 Preparation of tert-butyl 3-(4-(4-(3-oxopropyl)piperidin-l-yl)pyridin-3- yl)azetidine-l -carboxylate
  • Step 6 Preparation of tert-butyl 3-(4-(4-(but-3-yn-l-yl)piperidin-l-yl)pyridin-3- yl)azetidine-l -carboxylate
  • potassium carbonate 158 mg, 1.15 mmol, 2 eq
  • MeOH 2 mL
  • dimethyl (l-diazo-2-oxopropyl)phosphonate 121 mg, 632 pmol, 1.1 eq
  • Step 7 Preparation of tert-butyl 3-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)-3-methyl- 2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin-3- yl)azetidine-l -carboxylate
  • Step 8 Preparation of 3-(5-(4-(l-(3-(azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but- l-yn-l-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione
  • Step 9 Preparation of tert-butyl ((3S, 6S,9aS)-3-(3-(4-(4-(4-(4-(l-(2, 6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a azepin- 6-yl) carbamate
  • Step 10 Preparation of 3-(5-(4-(l-(3-(l-((3S, 6S,9aS)-6-amino-5-oxooctahydro- lH-pyrrolo[ 1, 2 -a ]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl) but-l-yn-1- yl)- 3 -me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione
  • Step 11 Preparation of ((2-(((3S, 6S, 9aS) -3-(3-(4-(4-(4-(4-(l-(2, 6-dioxopiperidin-3- yl)- 3 -me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)dijluoromethyl)phosphonic acid
  • Step 1 Preparation of S,S ⁇ 4((((((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(4-(l-(2,6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)dijluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) bis(2, 2 -dimethylpropanethioate) [00586] To a solution of
  • Step 1 Preparation of 3-(5-(4-(l-(3-(l-((3S, 6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but-l-yn-l-yl)-3- me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
  • Step 2 Preparation of ((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)-3-methyl- 2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin-3- yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)fluoromethyl)phosphonic acid
  • reaction mixture was purified by prep-HPLC (column: Welch Xtimate C18 150 x 25 mm x 5 urn; mobile phase: [water (FA) - ACN]; B%: 20% - 50%, 10 min) then lyophilization to give ((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(4-(l-(2,6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)fluoromethyl)phosphonic
  • Step 1 3-(5-(4-(l-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but-l-yn-l-yl)-3-methyl-2- oxo-2, 3-dihydro-lH-benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
  • Step 2 ((lR)-(2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)-3- me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin-3- yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)fluoromethyl)phosphonic acid
  • reaction mixture was purified by reversed -phase HPLC (Column:Phenomenex luna C18 150 x 25mm x 10um;Condition:water(FA)-ACN;Gradient Time(min):8) to give [(R)-(2- ⁇ [(3S,6S,9aS)-3- ⁇ 3-[4-(4- ⁇ 4-[l-(2,6-dioxopiperidin-3-yl)-3- methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5-yl]but-3-yn-l-yl ⁇ piperidin-l-yl)pyri din-3- yl]azetidine-l-carbonyl ⁇ -5-oxo-octahydro-lH-pyrrolo[l,2-a]azepin-6-yl]carbamoyl ⁇ -l- benzothiophen-5-yl)(fhioro)methyl]phosphonic acid (Compound 37,
  • Step 1 Preparation of tert-butyl ((3S, 6S,9aS)-3-(3-(4-(4-(4-(4-(l-(2, 6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a azepin- 6-yl) carbamate
  • Step 2 Preparation of 3-(5-(4-(l-(3-(l-((3S, 6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but-l-yn-l-yl)-3- me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
  • Step 3 Preparation of propyl (((1R)-(2 ⁇ (((3S, 6S,9aS)-3-(3-(4-(4-(4-(4-(4-(l-(2, 6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a ]azepin-6-y I) carbamoyl) benzo [b ]thiophen-5-yl) fluoromethyl) (phenoxy)phosphoryl) -L- alaninate
  • Step 1 Preparation of propyl (((lS)-(2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(4-(l-(2,6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a ]azepin-6-yl) carbamoyl) benzo [b ]thiophen-5-yl) fluoromethyl) (phenoxy)phosphoryl) -L- alaninate
  • Compound 40 is the phosphoric acid version of Compound 39.
  • FP assay was developed to determine IC50 values for test substances.
  • Recombinant STAT3 protein (STAT3(G127-I722)) at 25 nM was combined with a fluorescently labeled, phosphotyrosine peptide probe (5-FAM-GpYLPQTV-NH2) at 2 nM in FP buffer (10 mM HEPES pH 7.4, 50 mM NaCl, 1 mM EDTA, 0.05% Tween 20, 2 mM DTT).
  • 50 pL of STAT3-probe mixture was added to serial diluted compounds in black, 96-well plates (Greiner BioOne 655076) to a final concentration of 1% DMSO.
  • STAT6 Fluorescence Polarization (FP) Assay An FP assay was developed to determine IC50 values for test substances. Recombinant STAT6 protein (STAT6(W123-T658)) at 250 nM was combined with a fluorescently labeled, phosphotyrosine peptide probe (S-FAM-ApYKPFQDLI-NFfc) at 2 nM in FP buffer (10 mM HEPES pH 7.4, 50 mM NaCl, 1 mM EDTA, 0.05% Tween 20, 2 mM DTT).
  • STAT6 Recombinant STAT6 protein
  • S-FAM-ApYKPFQDLI-NFfc phosphotyrosine peptide probe

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Abstract

The current invention provides degraders of STAT3 and/or STAT6, which are useful for treating a variety of conditions associated with STAT3 and/or STAT6.

Description

STAT DEGRADERS AND USES THEREOF
I. FIELD OF THE INVENTION
[0001] The present invention relates to novel compounds for use as degraders of Signal Transducer and Activator of Transcription (STAT).
II. BACKGROUND
[0002] The Signal Transducer and Activator of Transcription (STAT) family of proteins consists of transcription factors that play an essential role in the regulation of cell processes, such as proliferation, differentiation, apoptosis and angiogenesis. Seven STAT genes have been identified in the human genome: STAT1, STAT2, STAT3, STAT4, STAT5a, STAT5b, and STAT6.
[0003] STAT3 has received particular attention because it is strongly associated with the promotion of tumor growth and immune evasion, and the only STAT family member whose genetic deletion results in embryonic lethality. Indeed, aberrantly elevated STAT3 activity has been estimated to occur in more than 70% of human cancers. Activated STAT3 mediates critical gene expression changes and molecular events that dysregulate cell growth and apoptosis, promote angiogenesis, invasion, metastasis, and the development of resistance to apoptosis, and suppress the host’s immune surveillance of the tumor, thereby making constitutively-active STAT3 a critical mediator of carcinogenesis and tumor progression.
[0004] Another STAT protein that has gained recent interest is STAT6. Recent studies have shown that STAT6 signaling is essential for IL-4- and IL-13-induced epithelial mesenchymal transition (EMT) and aggressiveness of colorectal cancer cells (CRC) cells. STAT6 is involved in several aspects of inflammatory disease and other related conditions.
[0005] Ubiquitin-Proteasome Pathway (UPP) or Ubiquitin-Proteasome System (UPS) is a critical pathway that regulates key regulator proteins and degrades misfolded or abnormal proteins. UPP is central to multiple cellular processes, and if defective or imbalanced, it leads to pathogenesis of a variety of diseases. The covalent attachment of ubiquitin to specific protein substrates is achieved through the action of E3 ubiquitin ligases.
III. SUMMARY
[0006] Given their role in the regulation of cell processes, modulating the activity of one or more STAT proteins, particularly STAT3 and/or STAT6, represent a pivotal area of investigation for the treatment of cancer, inflammatory conditions, and other therapeutic needs. [0007] Targeted protein degradation has become an advancing area as seen with rapid progression of PROTACs (proteolysis targeting chimeras) to clinic. PROTACs are protein degraders, which utilize the cell’s own waste disposal machinery to eliminate, instead of inhibit, a target protein. PROTACs are bifunctional in that they simultaneously bind a target protein and an E3 ligase protein. This event subsequently ubiquitylates the target, marking it for proteasomal degradation. This, and related processes, represent a new therapeutic modality for the treatment of diseases.
[0008] The present invention provides novel bifunctional compounds for degradation of STAT3 and/or STAT6 by recruiting them to E3 uniquitin ligase for degradation. The advantage of using the methods of the invention are that a broad range of targets that may be modulalted by recruiting E3 ubiquitin ligase for degradation.
[0009] In certain aspects, the invention provides effective degraders of the STAT3 and/or STAT6. The degraders of STAT3 and/or STAT6 have general Formula A:
Figure imgf000003_0001
wherein, TBM is target binding moiety; DM is degradation moiety; and L is a linker between TBM and DM. A TBM is a moiety that binds to a target protein that should be degraded. In certain embodiments, the TBM is the moiety that binds to STAT3 and/or STAT6. The degradation moiety is responsible for induding degradation of the target. In certain embodiments, the degradation moiety acts by recruitment of ubiquiting E3 ligase to the target attached to TBM, and thus results in degradation of the target.
[0010] In certain aspects, the compounds of the invention provide that the TBM moiety comprises a STAT3 and/or STAT6 binding moiety. The STAT3 and/or STAT6 binding moeity are inhibitors and/or modulators of STAT3 and/or STAT6. In certain embodiments, the STAT3 and/or STAT6 binding are compounds provided in WO 2023/133336, which is incorporated by reference in its entirey.
[0011] In certain embodiments, the STAT3 and/or STAT6 binding moiety is a compound of Formula (!’):
Figure imgf000004_0001
or a pharmaceutically acceptable salt thereof, wherein: q is 0 or 1 and t is 0, 1, or 2, provided that at least one of q or t is 1; p is 1 or 2; the dotted line represents a single or double bond;
R1 is selected from an 8- to 10-membered fused bicyclic heteroaryl substituted with - CRlaR2aP(O)ORlbOR2b or -CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an 8- to 10-membered fused bicyclic heterocyclyl substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an aryl substituted with CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], a -(Ci-C4)alkyl(aryl) wherein said aryl portion of - (Ci-C4)alkyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], and a -(C2-C4)alkenyl(aryl) wherein said aryl portion of -(C2-C4)alkenyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT];
Rla and R2a are each absent or are independently selected from hydrogen, cyano, (Ci- C4)alkyl, hydroxy(Ci-C4)alkyl and fluoro; or Rla and R2a taken together with the carbon they are attached form oxo;
Rlb and R2b are each absent or are independently selected from hydrogen, (Ci-C4)alkyl, halo(Ci-C4)alkyl, -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-C(O)O-[(Ci- C4)alkyl], -[(Ci-C4)alkyl]-0-[(Ci-C2o)alkyl], -[(Ci-C4)alkyl]-OC(O)-[halo(Ci-C4)alkyl], [(Ci- C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl], [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl], -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-OC(O)-[(Ci- C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O- [halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-OC(O)O- [(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]- SC(O)-[halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-SC(O)- [(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)NH(Ci-C4)alkyl], -[(Ci-C4)alkyl]- OC(O)N[(Ci-C4)alkyl]2, 5- to 6- membered heteroaryl, and aryl, wherein said 5- to 6- membered heteroaryl and aryl are each optionally and independently substituted with, as valency permits, 1 to 2 groups selected from halo, cyano, and (Ci-C4)alkyl and wherein said 5- to 7-membered heterocyclyl of [(Ci-C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl] and [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl] are each optionally and independently substituted with, as valency permits 1 to 2 groups selected from C(O)ORh;
R2 is selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, cyano, and hydroxyl;
R3 and R4 are each independently selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci- C4)alkyl, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -(Ci- C4)alkyl(Ci-C4)alkoxy, hydroxyl, cyano, -NRaRb, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl, wherein said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rs; or R3 and R4 are taken together on the same carbon atom to form a (C3-Ce)cycloalkyl or a 4- to 6-membered heterocyclyl each optionally substituted with, as valency permits, 1 to 3 groups selected from halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, and halo(Ci- C4)alkoxy;
R5 and R6 are each independently selected from hydrogen and (Ci-C4)alkyl;
R7 is selected from (Ci-C4)alkyl, phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said (Ci- C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RY and said phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rz; or
R6 and R7 together with the nitrogen atom to which they are attached form a 4- to 14- membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with, as valency permits, 1 to 3 groups selected from RQ;
AA is the residue of an alpha or beta natural or non-natural amino acid;
RT is selected from (Ci-C4)alkyl, benzyl, and phenyl, wherein said phenyl is optionally substituted with 1 or 2 groups selected from halo, (Ci-C4)alkyl, and halo(Ci-C4)alkyl; RQ is selected from halo, (C2-C4)alkenyl, (Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, phenyl, hydroxyl, 4- to 6-membered heterocyclyl, 5- to 10-membered monocyclic or bicyclic heteroaryl, (C3-Ce)cycloalkyl, oxo, imino, -O(phenyl), -C(O)Rg, - C(O)ORe, -NHC(O)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, - S(O)NReRf, and -S(0)2NReRf, wherein said (C2-C4)alkenyl and (Ci-C4)alkyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RM, and wherein said phenyl, 5- to 10- membered monocyclic or bicyclic heteroaryl, (C3- Ce)cycloalkyl, and 4- to 6-membered heterocyclyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RF;
RY is selected from halo, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, cyano, -C(O)Rg, - C(O)ORe, -NHC(O)Re, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, - S(O)2NReRf, hydroxyl, phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RJ and RM are each independently selected from halo, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, -C(O)Rg, -C(O)ORe, -NHC(O)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, - S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, -S(O)2NReRf, hydroxyl, phenyl, 4- to 6- membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RF, RS, RX, and Rz are each independently selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, -(Ci-C4)alkyl(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (C2- C4)alkenyl, halo(C2-C4)alkenyl, (C2-C4)alkynyl, halo(C2-C4)alkynyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, hydroxyl, oxo, imino, phenyl, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, - S(O)NReRf, and -S(O)2NReRf, -C(O)ORe, -NRcC(O)Re, -C(O)Rg, -C(O)NRcRd, and -NRaRb, wherein said phenyl and said phenyl for the group -(Ci-C4)alkylphenyl are each optionally and independently substituted with, as valency permits 1 to 3 groups selected from halo, cyano, (Ci-Cio)alkyl, (C2-Cio)alkenyl, (C2-Cio)alkynyl, halo(Ci-Cio)alkyl, (Ci-Cio)alkoxy, and halo(Ci-Cio)alkoxy, wherein said (Ci-Cio)alkyl, (C2-Cio)alkenyl and (C2-Cio)alkynyl are each optionally substituted with, as valency permits a 5-to 10-membered monocyclic or bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl each of said 5 -to 10- membered monocyclic and bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl being optionally substituted with oxo or a 5- to 7-membered heterocyclyl that is optionally substituted with 1 to 2 oxo; and
Ra, Rb, Rc, Rd, Re, R1. Rg, and Rh are each independently selected from, as valency permits, hydrogen, (Ci-C4)alkyl, phenyl, (C3-Ce)cycloalkyl, 4- to 6-membered heterocyclyl and 5- to 6-membered heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RJ, and said phenyl, (C3-Ce)cycloalkyl, 4- to 6- membered heterocyclyl, and 5- to 6-membered heteroaryl are each independently optionally substituted with, as valency permits, 1 to 3 groups selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxyl, phenyl, and benzyl.
[0012] In certain embodiments from the present invention, the L and DM moieties are described herein. In certain embodiments, the L and DM moieties are provided in WO 2024/064080, which is incorporated by reference in its entirety.
[0013] In certain aspects, the invention provides that the compounds of the invention are compounds having the structural Formula I:
Figure imgf000007_0001
or a pharmaceutically acceptable salt thereof, wherein: q is 0 or 1 and t is 0, 1, or 2, provided that at least one of q or t is 1; p is 1 or 2; the dotted line represents a single or double bond;
R1 is selected from an 8- to 10-membered fused bicyclic heteroaryl substituted with - CRlaR2aP(O)ORlbOR2b or -CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an 8- to 10-membered fused bicyclic heterocyclyl substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an aryl substituted with CRlaR2aP(O)ORlbOR2b or - CRlaR2ap(O)[ORlb][NH(AA)C(O)ORT], a -(Ci-C4)alkyl(aryl) wherein said aryl portion of - (Ci-C4)alkyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], and a -(C2-C4)alkenyl(aryl) wherein said aryl portion of -(C2-C4)alkenyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT];
Rla and R2a are each absent or are independently selected from hydrogen, cyano, (Ci- C4)alkyl, hydroxy(Ci-C4)alkyl and fluoro; or Rla and R2a taken together with the carbon they are attached form oxo;
Rlb and R2b are each absent or are independently selected from hydrogen, (Ci-C4)alkyl, halo(Ci-C4)alkyl, -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-C(O)O-[(Ci- C4)alkyl], -[(Ci-C4)alkyl]-0-[(Ci-C2o)alkyl], -[(Ci-C4)alkyl]-OC(O)-[halo(Ci-C4)alkyl], [(Ci- C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl], [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl], -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-OC(O)-[(Ci- C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O- [halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-OC(O)O- [(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]- SC(O)-[halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-SC(O)- [(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)NH(Ci-C4)alkyl], -[(Ci-C4)alkyl]- OC(O)N[(Ci-C4)alkyl]2, 5- to 6- membered heteroaryl, and aryl, wherein said 5- to 6- membered heteroaryl and aryl are each optionally and independently substituted with, as valency permits, 1 to 2 groups selected from halo, cyano, and (Ci-C4)alkyl and wherein said 5- to 7-membered heterocyclyl of [(Ci-C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl] and [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl] are each optionally and independently substituted with, as valency permits 1 to 2 groups selected from C(O)ORh;
R2 is selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, cyano, and hydroxyl;
R3 and R4 are each independently selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci- C4)alkyl, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -(Ci- C4)alkyl(Ci-C4)alkoxy, hydroxyl, cyano, -NRaRb, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl, wherein said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rs; or R3 and R4 are taken together on the same carbon atom to form a (C3-Ce)cycloalkyl or a 4- to 6-membered heterocyclyl each optionally substituted with, as valency permits, 1 to 3 groups selected from halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, and halo(Ci- C4)alkoxy;
R5 and R6 are each independently selected from hydrogen and (Ci-C4)alkyl;
R7 is selected from E, -R10AE, (Ci-C4)alkyl, phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RY and said phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, R11 and/or 1 to 3 groups selected from Rz; or
R6 and R7 together with the nitrogen atom to which they are attached form a 4- to 14- membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with, as valency permits, R12 and/or 1 to 3 groups selected from RQ;
R10A, R1OB, R1OC, and R10D are each independently a chemical spacer unit;
R11 is selected from -NHC(O)R10BE, -OR10BE, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR10BE, -NHR10BE, -[N(Ci-C4)alkyl]R10BE, or R10BE, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
R12 is selected from -NHC(0)RlocE, -OR10CE, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR10CE, -NHR10CE, -[N(Ci-C4)alkyl]RlocE, or R10CE, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
R13 is selected from -NHC(O)R10DE, -OR10DE, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR10DE, -NHR10DE, -[N(Ci-C4)alkyl]R10DE, or R10DE, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
E is a chemical moiety that binds to E3 ligase;
AA is the residue of an alpha or beta natural or non-natural amino acid;
RT is selected from (Ci-C4)alkyl, benzyl, and phenyl, wherein said phenyl is optionally substituted with 1 or 2 groups selected from halo, (Ci-C4)alkyl, and halo(Ci-C4)alkyl; RQ is selected from halo, (C2-C4)alkenyl, (Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, phenyl, hydroxyl, 4- to 6-membered heterocyclyl, 5- to 10-membered monocyclic or bicyclic heteroaryl, (C3-Ce)cycloalkyl, oxo, imino, -O(phenyl), -C(O)Rg, - C(O)ORe, -NHC(O)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, - S(O)NReRf, and -S(0)2NReRf, wherein said (C2-C4)alkenyl and (Ci-C4)alkyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RM, and wherein said phenyl, 5- to 10- membered monocyclic or bicyclic heteroaryl, (C3- Ce)cycloalkyl, and 4- to 6-membered heterocyclyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RF;
RY is selected from halo, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, cyano, -C(O)Rg, - C(O)ORe, -NHC(O)Re, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, - S(O)2NReRf, hydroxyl, phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RJ and RM are each independently selected from halo, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, -C(O)Rg, -C(O)ORe, -NHC(O)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, - S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, -S(O)2NReRf, hydroxyl, phenyl, 4- to 6- membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RF, RS, and Rx are each independently selected from halo, cyano, (Ci-C4)alkyl, halo(Ci- C4)alkyl, -(Ci-C4)alkyl(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (C2- C4)alkenyl, halo(C2-C4)alkenyl, (C2-C4)alkynyl, halo(C2-C4)alkynyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, hydroxyl, oxo, imino, phenyl, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, - S(O)NReRf, and -S(O)2NReRf, -C(O)ORe, -NRcC(O)Re, -C(O)Rg, -C(O)NRcRd, and -NRaRb, wherein said phenyl and said phenyl for the group -(Ci-C4)alkylphenyl are each optionally and independently substituted with, as valency permits 1 to 3 groups selected from halo, cyano, (Ci-Cio)alkyl, (C2-Cio)alkenyl, (C2-Cio)alkynyl, halo(Ci-Cio)alkyl, (Ci-Cio)alkoxy, and halo(Ci-Cio)alkoxy, wherein said (Ci-Cio)alkyl, (C2-Cio)alkenyl and (C2-Cio)alkynyl are each optionally substituted with, as valency permits a 5-to 10-membered monocyclic or bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl each of said 5-to 10- membered monocyclic and bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl being optionally substituted with oxo or a 5- to 7-membered heterocyclyl that is optionally substituted with 1 to 2 oxo;
Rz is selected from halo, cyano, (Ci-C4)alkyl, (Cs-Cecycloalkyl), halo(Ci-C4)alkyl, - (Ci-C4)alkyl(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, -(Ci- C4)alkylheteroaryl, (C2-C4)alkenyl, halo(C2-C4)alkenyl, (C2-C4)alkynyl, halo(C2-C4)alkynyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -ORe, oxo, imino, phenyl, 4- to 6-membered heterocyclyl, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, -S(O)NReRf, and -S(O)2NReRf, -C(O)ORe, - NRcC(O)Re, -(Ci-C4alkyl)C(O)Rg, -C(O)Rg, -(Ci-C4alkyl)C(O)NRcRd, -C(O)NRcRd, -NO2, and -NRaRb, wherein the (Ci-C4)alkyl is optionally substituted with cyano, wherein said phenyl, said 4- to 6-membered heterocyclyl, and said phenyl for -(Ci-C4)alkylphenyl are each optionally and independently substituted with, as valency permits R13 and/or 1 to 3 groups selected from halo, cyano, oxo, (Ci-Cio)alkyl, (C2-Cio)alkenyl, (C2-Cio)alkynyl, halo(Ci- Cio)alkyl, (Ci-Cio)alkoxy, and halo(Ci-Cio)alkoxy, wherein said (Ci-Cio)alkyl, (C2- Cio)alkenyl and (C2-Cio)alkynyl are each optionally substituted with, as valency permits a 5-to 10-membered monocyclic or bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl each of said 5-to 10-membered monocyclic and bicyclic heteroaryl or a 4-to 10- membered monocyclic or bicyclic heterocyclyl being optionally substituted with oxo or a 5- to 7-membered heterocyclyl that is optionally substituted with 1 to 2 oxo;
Ra, Rb, Rc, Rd, Re, R1. Rg, and Rh are each independently selected from, as valency permits, hydrogen, (Ci-C4)alkyl, phenyl, (C3-Ce)cycloalkyl, 4- to 6-membered heterocyclyl and 5- to 6-membered heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RJ, and said phenyl, (C3-Ce)cycloalkyl, 4- to 6- membered heterocyclyl, and 5- to 6-membered heteroaryl are each independent! sy optionally substituted with, as valency permits, 1 to 3 groups selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxyl, phenyl, and benzyl.
[0014] In one aspect, the disclosed compounds of Formula I and pharmaceutically acceptable salts thereof act as protein degraders of STAT3 and/or STAT6, and are useful in a variety of therapeutic applications such as, for example, in treating cancer and inflammatory conditions.
[0015] Pharmaceutical compositions comprising the compounds and pharmaceutically acceptable salts of Formula I, as well as methods for their preparation are also included. [0016] Methods of treating conditions responsive to the degradation of STAT3 and/or STAT6 using the described compounds, pharmaceutically acceptable salts, and compositions thereof are also included.
IV. DETAILED DESCRIPTION
1. General Description of Compounds
[0017] The present invention provides novel bifunctional compounds for degradation of STAT3 and/or STAT6 by recruiting them to E3 uniquitin ligase for degradation. The advantage of using the methods of the invention are that a broad range of targets that may be modulalted by recruiting E3 ubiquitin ligase for degradation.
[0018] In certain aspects, the invention provides effective degraders of the STAT3 and/or STAT6. The degraders of STAT3 and/or STAT6 have general Formula A:
Figure imgf000012_0001
wherein, TBM is target binding moiety; DM is degradation moiety; and L is a linker between TBM and DM. A TBM is a moiety that binds to a target protein that should be degraded. In certain embodiments, the TBM is the moiety that binds to STAT3 and/or STAT6. The degradation moiety is responsible for induding degradation of the target. In certain embodiments, the degradation moiety acts by recruitment of ubiquiting E3 ligase to the target attached to TBM, and thus results in degradation of the target.
[0019] In certain aspects, the compounds of the invention provide that the TBM moiety comprises a STAT3 and/or STAT6 binding moiety. The STAT3 and/or STAT6 binding moeity are inhibitors and/or modulators of STAT3 and/or STAT6. In certain embodiments, the STAT3 and/or STAT6 binding are compounds provided in WO 2023/133336, which is incorporated by reference in its entirey.
[0020] In a first embodiment, provided herein is a compound of structural Formula I:
Figure imgf000013_0001
or a pharmaceutically acceptable salt thereof, wherein: q is 0 or 1 and t is 0, 1, or 2, provided that at least one of q or t is 1; p is 1 or 2; the dotted line represents a single or double bond;
R1 is selected from an 8- to 10-membered fused bicyclic heteroaryl substituted with - CRlaR2aP(O)ORlbOR2b or -CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an 8- to 10-membered fused bicyclic heterocyclyl substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an aryl substituted with CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], a -(Ci-C4)alkyl(aryl) wherein said aryl portion of - (Ci-C4)alkyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], and a -(C2-C4)alkenyl(aryl) wherein said aryl portion of -(C2-C4)alkenyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT];
Rla and R2a are each absent or are independently selected from hydrogen, cyano, (Ci- C4)alkyl, hydroxy(Ci-C4)alkyl and fluoro; or Rla and R2a taken together with the carbon they are attached form oxo;
Rlb and R2b are each absent or are independently selected from hydrogen, (Ci-C4)alkyl, halo(Ci-C4)alkyl, -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-C(O)O-[(Ci- C4)alkyl], -[(Ci-C4)alkyl]-0-[(Ci-C2o)alkyl], -[(Ci-C4)alkyl]-OC(O)-[halo(Ci-C4)alkyl], [(Ci- C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl], [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl], -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-OC(O)-[(Ci- C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O- [halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-OC(O)O- [(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]- SC(O)-[halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-SC(O)- [(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)NH(Ci-C4)alkyl], -[(Ci-C4)alkyl]- OC(O)N[(Ci-C4)alkyl]2, 5- to 6- membered heteroaryl, and aryl, wherein said 5- to 6- membered heteroaryl and aryl are each optionally and independently substituted with, as valency permits, 1 to 2 groups selected from halo, cyano, and (Ci-C4)alkyl and wherein said 5- to 7-membered heterocyclyl of [(Ci-C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl] and [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl] are each optionally and independently substituted with, as valency permits 1 to 2 groups selected from C(O)ORh;
R2 is selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, cyano, and hydroxyl;
R3 and R4 are each independently selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci- C4)alkyl, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -(Ci- C4)alkyl(Ci-C4)alkoxy, hydroxyl, cyano, -NRaRb, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl, wherein said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rs; or R3 and R4 are taken together on the same carbon atom to form a (C3-Ce)cycloalkyl or a 4- to 6-membered heterocyclyl each optionally substituted with, as valency permits, 1 to 3 groups selected from halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, and halo(Ci- C4)alkoxy;
R5 and R6 are each independently selected from hydrogen and (Ci-C4)alkyl;
R7 is selected from E, -R10AE, (Ci-C4)alkyl, phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RY and said phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, R11 and/or 1 to 3 groups selected from Rz; or
R6 and R7 together with the nitrogen atom to which they are attached form a 4- to 14- membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with, as valency permits, R12 and/or 1 to 3 groups selected from RQ;
R10A, R1OB, R1OC, and R10D are each independently a chemical spacer unit;
R11 is selected from -NHC(O)R10BE, -OR10BE, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR10BE, -NHR10BE, -[N(Ci-C4)alkyl]R10BE, or R10BE, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
R12 is selected from -NHC(0)RlocE, -OR10CE, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR10CE, -NHR10CE, -[N(Ci-C4)alkyl]RlocE, or R10CE, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
R13 is selected from -NHC(O)R10DE, -OR10DE, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR10DE, -NHR10DE, -[N(Ci-C4)alkyl]R10DE, or R10DE, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
E is a chemical moiety that binds to E3 ligase;
AA is the residue of an alpha or beta natural or non-natural amino acid;
RT is selected from (Ci-C4)alkyl, benzyl, and phenyl, wherein said phenyl is optionally substituted with 1 or 2 groups selected from halo, (Ci-C4)alkyl, and halo(Ci-C4)alkyl;
RQ is selected from halo, (C2-C4)alkenyl, (Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, phenyl, hydroxyl, 4- to 6-membered heterocyclyl, 5- to 10-membered monocyclic or bicyclic heteroaryl, (C3-Ce)cycloalkyl, oxo, imino, -O(phenyl), -C(O)Rg, - C(O)ORe, -NHC(O)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, - S(O)NReRf, and -S(0)2NReRf, wherein said (C2-C4)alkenyl and (Ci-C4)alkyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RM, and wherein said phenyl, 5- to 10- membered monocyclic or bicyclic heteroaryl, (C3- Ce)cycloalkyl, and 4- to 6-membered heterocyclyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RF;
RY is selected from halo, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, cyano, -C(O)Rg, - C(O)ORe, -NHC(O)Re, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, - S(O)2NReRf, hydroxyl, phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RJ and RM are each independently selected from halo, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, -C(O)Rg, -C(O)ORe, -NHC(O)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, - S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, -S(O)2NReRf, hydroxyl, phenyl, 4- to 6- membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RF, RS, and Rx are each independently selected from halo, cyano, (Ci-C4)alkyl, halo(Ci- C4)alkyl, -(Ci-C4)alkyl(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (C2- C4)alkenyl, halo(C2-C4)alkenyl, (C2-C4)alkynyl, halo(C2-C4)alkynyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, hydroxyl, oxo, imino, phenyl, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, - S(O)NReRf, and -S(O)2NReRf, -C(O)ORe, -NRcC(O)Re, -C(O)Rg, -C(O)NRcRd, and -NRaRb, wherein said phenyl and said phenyl for the group -(Ci-C4)alkylphenyl are each optionally and independently substituted with, as valency permits 1 to 3 groups selected from halo, cyano, (Ci-Cio)alkyl, (C2-Cio)alkenyl, (C2-Cio)alkynyl, halo(Ci-Cio)alkyl, (Ci-Cio)alkoxy, and halo(Ci-Cio)alkoxy, wherein said (Ci-Cio)alkyl, (C2-Cio)alkenyl and (C2-Cio)alkynyl are each optionally substituted with, as valency permits a 5-to 10-membered monocyclic or bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl each of said 5-to 10- membered monocyclic and bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl being optionally substituted with oxo or a 5- to 7-membered heterocyclyl that is optionally substituted with 1 to 2 oxo;
Rz is selected from halo, cyano, (Ci-C4)alkyl, (Cs-Cecycloalkyl), halo(Ci-C4)alkyl, - (Ci-C4)alkyl(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, -(Ci- C4)alkylheteroaryl, (C2-C4)alkenyl, halo(C2-C4)alkenyl, (C2-C4)alkynyl, halo(C2-C4)alkynyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -ORe, oxo, imino, phenyl, 4- to 6-membered heterocyclyl, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, -S(O)NReRf, and -S(O)2NReRf, -C(O)ORe, - NRcC(O)Re, -(Ci-C4alkyl)C(O)Rg, -C(O)Rg, -(Ci-C4alkyl)C(O)NRcRd, -C(O)NRcRd, -NO2, and -NRaRb, wherein the (Ci-C4)alkyl is optionally substituted with cyano, wherein said phenyl, said 4- to 6-membered heterocyclyl, and said phenyl for -(Ci-C4)alkylphenyl are each optionally and independently substituted with, as valency permits R13 and/or 1 to 3 groups selected from halo, cyano, oxo, (Ci-Cio)alkyl, (C2-Cio)alkenyl, (C2-Cio)alkynyl, halo(Ci- Cio)alkyl, (Ci-Cio)alkoxy, and halo(Ci-Cio)alkoxy, wherein said (Ci-Cio)alkyl, (C2- Cio)alkenyl and (C2-Cio)alkynyl are each optionally substituted with, as valency permits a 5-to 10-membered monocyclic or bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl each of said 5-to 10-membered monocyclic and bicyclic heteroaryl or a 4-to 10- membered monocyclic or bicyclic heterocyclyl being optionally substituted with oxo or a 5- to 7-membered heterocyclyl that is optionally substituted with 1 to 2 oxo;
Ra, Rb, Rc, Rd, Re, R1. Rg, and Rh are each independently selected from, as valency permits, hydrogen, (Ci-C4)alkyl, phenyl, (C3-Ce)cycloalkyl, 4- to 6-membered heterocyclyl and 5- to 6-membered heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RJ, and said phenyl, (C3-Ce)cycloalkyl, 4- to 6- membered heterocyclyl, and 5- to 6-membered heteroaryl are each independent! sy optionally substituted with, as valency permits, 1 to 3 groups selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxyl, phenyl, and benzyl.
2. Definitions
[0021] When used in connection to describe a chemical group that may have multiple points of attachment, a hyphen (-) designates the point of attachment of that group to the variable to which it is defined. For example, -NRcC(O)Re means that the point of attachment for this group occurs on the nitrogen atom.
[0022] The terms “halo” and “halogen” refer to an atom selected from fluorine (fluoro, -F), chlorine (chloro, -Cl), bromine (bromo, -Br), and iodine (iodo, -I).
[0023] Unless otherwise specified, the term “alkyl” when used alone or as part of a larger moiety, such as “haloalkyl”, and the like, means saturated straight-chain or branched monovalent hydrocarbon radical.
[0024] The term “haloalkyl” includes mono, poly, and perhaloalkyl groups where the halogens are independently selected from fluorine, chlorine, bromine, and iodine.
[0025] “Alkoxy” means an alkyl radical attached through an oxygen linking atom, represented by -O-alkyl. For example, “(Ci-C4)alkoxy” includes methoxy, ethoxy, proproxy, and butoxy.
[0026] “Haloalkoxy” is a haloalkyl group which is attached to another moiety via an oxygen atom such as, e.g., -OCHF2 or -OCF3.
[0027] The term “oxo” means the group =0.
[0028] The term “imino” means the group =NH.
[0029] Unless otherwise specified, the term “heteroaryl” refers to a 5- to 12-membered aromatic radical containing 1-4 heteroatoms selected from N, O, and S. In some instances, nitrogen atoms in a heteroaryl may be quaternized. The term “heteroaryl” may be used interchangeably with the terms “heteroaryl ring”, “heteroaryl group”, or “heteroaromatic”. A heteroaryl group may be mono- or bi-cyclic. Monocyclic heteroaryl includes, for example, thienyl, furanyl, pyrrolyl, imidazolyl, pyrazolyl, triazolyl, tetrazolyl, oxazolyl, isoxazolyl, oxadiazolyl, thiazolyl, isothiazolyl, thiadiazolyl, pyridyl, pyridazinyl, pyrimidinyl, pyrazinyl, etc. Bi-cyclic heteroaryls include groups in which a monocyclic heteroaryl ring is fused to one or more aryl or heteroaryl rings. Nonlimiting examples include indolyl, benzooxazolyl, benzooxodi azolyl, indazolyl, benzimidazolyl, benzthiazolyl, benzothiopheneyl, quinolinyl, quinazolinyl, quinoxalinyl, pyrrolopyridinyl, pyrrolopyrimidinyl, pyrrolopyridinyl, thienopyridinyl, thienopyrimidinyl, indolizinyl, purinyl, cinnolinyl, naphthyridinyl, and pteridinyl. It will be understood that when specified, optional substituents on a heteroaryl group may be present on any substitutable position and, include, e.g., the position at which the heteroaryl is attached (where valency permits).
[0030] Unless otherwise specified, the term “heterocyclyl” means a 4- to 12-membered saturated or partially unsaturated heterocyclic ring containing 1 to 4 heteroatoms independently selected from N, O, and S. The terms “heterocycle”, “heterocyclyl”, “heterocyclyl ring”, “heterocyclic group”, “heterocyclic moiety”, and “heterocyclic radical”, are used interchangeably herein. A heterocyclyl ring can be attached to its pendant group at any heteroatom or carbon atom that results in a stable structure. A heterocyclyl group may be mono- or bicyclic (e.g., a bridged, fused, or spiro bicyclic ring). Examples of monocyclic saturated or partially unsaturated heterocyclic radicals include, without limitation, azetidinyl, tetrahydrofuranyl, tetrahydrothienyl, terahydropyranyl, pyrrolidinyl, pyrrolidonyl, piperidinyl, oxazolidinyl, piperazinyl, dioxanyl, dioxolanyl, morpholinyl, dihydrofuranyl, dihydropyranyl, dihydropyridinyl, tetrahydropyridinyl, dihydropyrimidinyl, tetrahydropyrimidinyl, dihydrooxadizolyl, and dihydroisoxazolyl. Bi-cyclic heterocyclyl groups include, e.g., unsaturated heterocyclic radicals fused to another unsaturated heterocyclic radical, cycloalkyl, aryl, or heteroaryl ring, such as for example, benzodi oxolyl, dihydrobenzodioxinyl, dihydrobenzofuranyl, dihydrobenzothiophenyl, 5-oxa-2,6-diazaspiro[3.4]oct-6-enyl, 6-thia- 2,7-diazaspiro[3.4]octanyl, 2,6-diazaspiro[3.3]heptanyl, spiro[indoline-3,3 Epyrrolidine]-yl, thiochromanyl, and the like. It will be understood that when specified, optional substituents on a heterocyclyl group may be present on any substitutable position and, include, e.g., the position at which the heterocyclyl is attached (where valency permits).
[0031] The term “spiro” refers to two rings that shares one ring atom (e.g., carbon).
[0032] The term “fused” refers to two rings that share two adjacent ring atoms with one another. [0033] The term “bridged” refers to two rings that share three adjacent ring atoms with one another.
[0034] The term “aryl” refers to an aromatic carbocyclic single ring or two fused ring system containing 6 to 10 carbon atoms. Examples include phenyl, indanyl, tetrahydronaphthalene, and naphthyl. In one aspect, the aryl is phenyl or naphthyl.
[0035] The terms “cycloalkyl”, used alone or as part of a larger moiety, refers to a saturated cyclic aliphatic monocyclic or bicyclic ring system, as described herein, having from, unless otherwise specified, 3 to 10 carbon ring atoms. Monocyclic cycloalkyl groups include, without limitation, cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, cycloheptyl, cycloheptenyl, and cyclooctyl. It will be understood that when specified, optional substituents on a cycloalkyl or cycloaliphatic group may be present on any substitutable position and, include, e.g., the position at which the cycloalkyl group is attached.
[0036] The term alkylene refers to a refers to a bivalent radical of a saturated, straight or branched chain hydrocarbon (e.g., CEE) of the specified length.
[0037] The term alkynylene refers to an alkylene group that has at least one triple bond within the chain e.g., -(CEEjs-CH-.
[0038] The “residue of an amino acid” is the moiety remaining after formation of a bond between a reactive group in another compound (e.g., an amino group) and the carboxylic acid in the amino acid, after formation of a bond between a reactive group in another compound (e.g., a carboxylic acid) and the amino group in the amino acid, or both. As a consequence of the bond(s) formation, the carboxylic acid in the amino acid no longer has the OH group and instead has a bond between the carbonyl group and the reactive group in the compound; the amino group has only one hydrogen atom and instead has a bond between the reactive group in the other compound and the nitrogen of the amino group; or both. For example, the “residue of an alpha amino acid” can be depicted structurally as NH2CR’R-C(O)-, -NHCR’R-C(O)OH or -NHCR’R-C(O)-; and the “residue of an beta amino acid” can be depicted structurally as or NH2CR’RCH2-C(O)-, -NHCR’RCH2-C(O)OH or -NHCR’RCH2-C(O)-, where R’ is H or Ci- Ce alkyl and R is H or Ci-Ce alkyl optionally substituted with 1 to 3 groups selected from halo, (Ci-C3)alkoxy, OH, NH2, -NH(CI-C4 alkyl), -N[(Ci-C4 alkyl)]2, SH, S(Ci-C4 alkyl), imino, COOH, -COO(Ci-C4 alkyl), -CO(Ci-C4 alkyl), -CONH(Ci-C4 alkyl)phenyl, phenyl, and 5- to 10-membered heteroaryl, wherein said Ci-Ce alkyl may also be optionally interrupted by a sulfur or nitrogen heteroatom and wherein said phenyl is optionally substituted with 1 to 3 groups selected from OH, cyano, (Ci-C4 alkyl), and halo(Ci-C4 alkyl); or R is taken together with the nitrogen atoms from the alpha or beta amino acid residue to form a 4- to 6-membered heterocyclyl. For naturally occurring alpha amino acid (i.e., amino acids that occur in nature), R’ is H and R is selected from hydrogen, methyl, isopropyl, -CH2CH(CH3)2, -(CFh^SCHs, - CH(CH3)(CH2CH3), CH2OH, -CH(OH)(CH3), CH2SH, -CH2C(O)NH2, -(CH2)2C(O)NH2, benzyl, p-hydroxybenzyl, -CH2(indolyl), -(CH2)4NH2, -(CH2)3NHC(=NH2)NH2,
CH2(imidazolyl), -(CH2)C00H, and -(CEE^COOH; or R taken together with the nitrogen atom of the alpha or beta amio acid residue forms a pyrrolidinyl ring.
[0039] Non-natural amino acids are known in the art and include e.g., alpha-alkyl amino acids (e.g., alpha methyl), alpha-alkylalkoxy amino acids (e.g., alpha -CH2OCH3), N-methyl amino acids, homo-amino acids, etc.
[0040] A chemical spacer unit refers to refers to a cleavable or non-cleavable that joins the E3 ligase binder to the remainder of the molecule described herein. In one aspect, the chemical spacer is uncleavable in vivo. In one aspect, the chemical spacer comprises one or more cyclic ring systems. In another aspect, the chemical spacer comprises an alkyl chain optionally substituted by and/or interrupted with one or more chemical groups. In one aspect, the chemical spacer comprises optimal spatial and chemical properties to effectuate optimal therapeutic activity.
[0041] A chemical moiety that binds to E3 ligase refers to a chemical structure that binds to the pocket or surface of E3 ligase. E3 ligase binders are known in the art and include, but are not limited to CRBN, VHL, IAP, or MDM2 based E3 binders. See e.g., Angewandte Chemie International Edition 59(36), May 2020, DOI: 10.1002/anie.202004310; Medicinal Chemistry Communication 10(10), August 2019, DOE 10.1039/C9MD00272C; and Molecules 2022, 27(19), 6515; https://doi.org/10.3390/molecules27196515.
[0042] Compounds having one or more chiral centers can exist in various stereoisomeric forms. Stereoisomers are compounds that differ only in their spatial arrangement. Stereoisomers include all diastereomeric, enantiomeric, and epimeric forms as well as racemates and mixtures thereof. A “geometric isomer” refers to isomers that differ in the orientation of substituent group in relationship to a carbon-carbon double bond, a cycloalkyl ring, or a bridged bicyclic system. Atoms (other than H) on each side of a carbon-carbon double bond may be in an E (substituents are on opposite sides of the carbon-carbon double bond) or Z (substituents are oriented on the same side) configuration. “Cis” refers to substituents oriented on the same side of the ring, whereas “trans” refers to substituents oriented on opposite sides of the ring. [0043] When the stereochemical configuration at a chiral center in a compound having one or more chiral centers is depicted by its chemical name (e.g., where the configuration is indicated in the chemical name by “R” or “S”) or structure (e.g., the configuration is indicated by “wedge” bonds), the enrichment of the indicated configuration relative to the opposite configuration is greater than 50%, 60%, 70%, 80%, 90%, 99% or 99.9%. “Enrichment of the indicated configuration relative to the opposite configuration” is a mole percent and is determined by dividing the number of compounds with the indicated stereochemical configuration at the chiral center(s) by the total number of all of the compounds with the same or opposite stereochemical configuration in a mixture.
[0044] When a geometric isomer is depicted by name or structure, the enrichment of the indicated isomer relative to the opposite isomer is greater than 50%, 60%, 70%, 80%, 90%, 99% or 99.9%. “Enrichment of the indicated isomer relative to the opposite isomer” is a mole percent and is determined by dividing the number of compounds with the indicated geometrical configuration by the total number of all of the compounds with the same or opposite geometrical configuration in a mixture.
[0045] When a disclosed compound is named or depicted by structure without indicating stereochemistry, it is understood that the name or the structure encompasses one of the possible stereoisomers or geometric isomers free of the others, or a mixture of the encompassed stereoisomers or geometric isomers.
[0046] The terms “subject” and “patient” may be used interchangeably, and means a mammal in need of treatment, e.g., companion animals (e.g., dogs, cats, and the like), farm animals (e.g., cows, pigs, horses, sheep, goats and the like) and laboratory animals (e.g., rats, mice, guinea pigs and the like). Typically, the subject is a human in need of treatment.
[0047] As used herein, the terms “treatment,” “treat,” and “treating” refer to reversing, alleviating, delaying the onset of, or inhibiting the progress of a disease or disorder, or one or more symptoms thereof, as described herein. In some aspects, treatment may be administered after one or more symptoms have developed, i.e., therapeutic treatment. In other aspects, treatment may be administered in the absence of symptoms. For example, treatment may be administered to a susceptible individual prior to the onset of symptoms (e.g., in light of a history of symptoms and/or in light of exposure to a particular organism, or other susceptibility factors), i.e., prophylactic treatment. Treatment may also be continued after symptoms have resolved, for example to delay their recurrence. [0048] The term “pharmaceutically acceptable carrier” refers to a non-toxic carrier, adjuvant, or vehicle that does not destroy the pharmacological activity of the compound with which it is formulated. Pharmaceutically acceptable carriers, adjuvants or vehicles that may be used in the compositions described herein include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, poly acrylates, waxes, polyethylene- polyoxypropylene-block polymers, polyethylene glycol and wool fat.
[0049] For use in medicines, the salts of the compounds described herein refer to non-toxic “pharmaceutically acceptable salts.” Pharmaceutically acceptable salt forms include pharmaceutically acceptable acidic/anionic or basic/cationic salts. Suitable pharmaceutically acceptable acid addition salts of the compounds described herein include e.g., salts of inorganic acids (such as hydrochloric acid, hydrobromic, phosphoric, nitric, and sulfuric acids) and of organic acids (such as, acetic acid, benzenesulfonic, benzoic, methanesulfonic, and p- toluenesulfonic acids). Compounds of the present teachings with acidic groups such as carboxylic acids can form pharmaceutically acceptable salts with pharmaceutically acceptable base(s). Suitable pharmaceutically acceptable basic salts include e.g., ammonium salts, alkali metal salts (such as sodium and potassium salts) and alkaline earth metal salts (such as magnesium and calcium salts). Compounds with a quaternary ammonium group also contain a counteranion such as chloride, bromide, iodide, acetate, perchlorate and the like. Other examples of such salts include hydrochlorides, hydrobromides, sulfates, methanesulfonates, nitrates, benzoates and salts with amino acids such as glutamic acid.
[0050] The term “effective amount” or “therapeutically effective amount” refers to an amount of a compound described herein that is sufficient to achieve the desired therapeutic effect (such as treatment of a condition recited herein) under the conditions of administration.
3. Compounds of the Invention:
[0051] In certain embodiments, the STAT3 and/or STAT6 binding moiety is a compound of Formula (!’):
Figure imgf000023_0001
or a pharmaceutically acceptable salt thereof, wherein: q is 0 or 1 and t is 0, 1, or 2, provided that at least one of q or t is 1; p is 1 or 2; the dotted line represents a single or double bond;
R1 is selected from an 8- to 10-membered fused bicyclic heteroaryl substituted with - CRlaR2aP(O)ORlbOR2b or -CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an 8- to 10-membered fused bicyclic heterocyclyl substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an aryl substituted with CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], a -(Ci-C4)alkyl(aryl) wherein said aryl portion of - (Ci-C4)alkyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], and a -(C2-C4)alkenyl(aryl) wherein said aryl portion of -(C2-C4)alkenyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT];
Rla and R2a are each absent or are independently selected from hydrogen, cyano, (Ci- C4)alkyl, hydroxy(Ci-C4)alkyl and fluoro; or Rla and R2a taken together with the carbon they are attached form oxo;
Rlb and R2b are each absent or are independently selected from hydrogen, (Ci-C4)alkyl, halo(Ci-C4)alkyl, -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-C(O)O-[(Ci- C4)alkyl], -[(Ci-C4)alkyl]-0-[(Ci-C2o)alkyl], -[(Ci-C4)alkyl]-OC(O)-[halo(Ci-C4)alkyl], [(Ci- C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl], [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl], -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-OC(O)-[(Ci- C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O- [halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-OC(O)O- [(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]- SC(O)-[halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-SC(O)- [(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)NH(Ci-C4)alkyl], -[(Ci-C4)alkyl]- OC(O)N[(Ci-C4)alkyl]2, 5- to 6- membered heteroaryl, and aryl, wherein said 5- to 6- membered heteroaryl and aryl are each optionally and independently substituted with, as valency permits, 1 to 2 groups selected from halo, cyano, and (Ci-C4)alkyl and wherein said 5- to 7-membered heterocyclyl of [(Ci-C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl] and [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl] are each optionally and independently substituted with, as valency permits 1 to 2 groups selected from C(O)ORh;
R2 is selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, cyano, and hydroxyl;
R3 and R4 are each independently selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci- C4)alkyl, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -(Ci- C4)alkyl(Ci-C4)alkoxy, hydroxyl, cyano, -NRaRb, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl, wherein said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rs; or R3 and R4 are taken together on the same carbon atom to form a (C3-Ce)cycloalkyl or a 4- to 6-membered heterocyclyl each optionally substituted with, as valency permits, 1 to 3 groups selected from halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, and halo(Ci- C4)alkoxy;
R5 and R6 are each independently selected from hydrogen and (Ci-C4)alkyl;
R7 is selected from (Ci-C4)alkyl, phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said (Ci- C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RY and said phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rz; or
R6 and R7 together with the nitrogen atom to which they are attached form a 4- to 14- membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with, as valency permits, 1 to 3 groups selected from RQ;
AA is the residue of an alpha or beta natural or non-natural amino acid;
RT is selected from (Ci-C4)alkyl, benzyl, and phenyl, wherein said phenyl is optionally substituted with 1 or 2 groups selected from halo, (Ci-C4)alkyl, and halo(Ci-C4)alkyl; RQ is selected from halo, (C2-C4)alkenyl, (Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, phenyl, hydroxyl, 4- to 6-membered heterocyclyl, 5- to 10-membered monocyclic or bicyclic heteroaryl, (C3-Ce)cycloalkyl, oxo, imino, -O(phenyl), -C(O)Rg, - C(O)ORe, -NHC(O)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, - S(O)NReRf, and -S(0)2NReRf, wherein said (C2-C4)alkenyl and (Ci-C4)alkyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RM, and wherein said phenyl, 5- to 10- membered monocyclic or bicyclic heteroaryl, (C3- Ce)cycloalkyl, and 4- to 6-membered heterocyclyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RF;
RY is selected from halo, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, cyano, -C(O)Rg, - C(O)ORe, -NHC(O)Re, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, - S(O)2NReRf, hydroxyl, phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RJ and RM are each independently selected from halo, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, -C(O)Rg, -C(O)ORe, -NHC(O)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, - S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, -S(O)2NReRf, hydroxyl, phenyl, 4- to 6- membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RF, RS, RX, and Rz are each independently selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, -(Ci-C4)alkyl(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (C2- C4)alkenyl, halo(C2-C4)alkenyl, (C2-C4)alkynyl, halo(C2-C4)alkynyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, hydroxyl, oxo, imino, phenyl, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, - S(O)NReRf, and -S(O)2NReRf, -C(O)ORe, -NRcC(O)Re, -C(O)Rg, -C(O)NRcRd, and -NRaRb, wherein said phenyl and said phenyl for the group -(Ci-C4)alkylphenyl are each optionally and independently substituted with, as valency permits 1 to 3 groups selected from halo, cyano, (Ci-Cio)alkyl, (C2-Cio)alkenyl, (C2-Cio)alkynyl, halo(Ci-Cio)alkyl, (Ci-Cio)alkoxy, and halo(Ci-Cio)alkoxy, wherein said (Ci-Cio)alkyl, (C2-Cio)alkenyl and (C2-Cio)alkynyl are each optionally substituted with, as valency permits a 5-to 10-membered monocyclic or bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl each of said 5 -to 10- membered monocyclic and bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl being optionally substituted with oxo or a 5- to 7-membered heterocyclyl that is optionally substituted with 1 to 2 oxo; and
Ra, Rb, Rc, Rd, Re, R1. Rg, and Rh are each independently selected from, as valency permits, hydrogen, (Ci-C4)alkyl, phenyl, (C3-Ce)cycloalkyl, 4- to 6-membered heterocyclyl and 5- to 6-membered heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RJ, and said phenyl, (C3-Ce)cycloalkyl, 4- to 6- membered heterocyclyl, and 5- to 6-membered heteroaryl are each independently optionally substituted with, as valency permits, 1 to 3 groups selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxyl, phenyl, and benzyl.
[0052] In certain embodiments from the present invention, the L and DM moieties are described herein. In certain embodiments, the L and DM moieties are provided in WO 2024/064080, which is incorporated by reference in its entirety.
[0053] In some embodiments, DM is an E3 ligase ligand well known to one of ordinary skill in the art including those described in M. Toure, C. M. Crews, Angew. Chem. Int. Ed., 2016, 55, 1966, T. Uehara et al. Nature Chemical Biology, 2017, 13, 675, WO 2017/176708, US 2017/0281784, WO 2017/161119, WO 2017/176957, WO 2017/176958, WO 2015/160845, US 2015/0291562, WO 2016/197032, WO 2016/105518, US 2018/0009779, WO 2017/007612, 2018/0134684, WO 2013/106643, US 2014/0356322, WO 2002/020740, US 2002/0068063, WO 2012/078559, US 2014/0302523, WO 2012/003281, US
2013/0190340, US 2016/0022642, WO 2014/063061, US 2015/0274738, WO 2016/118666, US 2016/0214972, WO 2016/149668, US 2016/0272639, WO 2016/169989, US
2018/0118733, WO 2016/197114, US 2018/0147202, WO 2017/011371, US 2017/0008904, WO 2017/011590, US 2017/0037004, WO 2017/079267, US 2017/0121321, WO
2017/117473, WO 2017/117474, WO 2013/106646, WO 2014/108452, WO 2017/197036, US 2019/0076540, WO 2017/197046, US 2019/0076542, WO 2017/197051, US 2019/0076539, WO 2017/197055, US 2019/0076541, and WO 2017/197056, the entirety of each of which is herein incorporated by reference.
[0054] In certain embodiments, L is attached to a modifiable carbon, oxygen, or nitro substitution or replacement group on one or both of DM and TBM.
[0055] In certain embodiments, the DM is a cereblon E3 ubiquitin ligase binding moiety (hereinafter also referred to as LBM). [0056] In some embodiments, LBM is selected from the group consisting of:
Figure imgf000027_0001
Figure imgf000028_0001
Figure imgf000029_0001
Figure imgf000030_0001
[0057] In some embodiments, LBM is E3 Ubiquitin ligase binding moiety recited in Varfolomeev, E. et al., IAP Antagonists Induce Autoubiquitination of c-IAPs, NF-KB activation, and TNFa- Dependent Apoptosis, Cell, 2007, 131(4): 669-81, such as, for example:
Figure imgf000030_0002
wherein L is attached to a modifiable carbon, oxygen, nitrogen or sulfur atom.
[0058] In certain embodiments, LBM is selected from the group consisting of:
Figure imgf000030_0003
Figure imgf000031_0001
Figure imgf000032_0001
[0059] In certain embodiments, the LBM is selected from the group consisting of:
Figure imgf000033_0001
Figure imgf000034_0001
Figure imgf000035_0001
Figure imgf000036_0001
[0060] In certain embodiments, LBM is selected from the group consisting of:
Figure imgf000036_0002
[0061] As describd herein, L is a bivalent moiety that connects TBM and DM.
[0062] In certain embodiments, L is a bivalent moiety that connects TBM to a lysine mimetic. [0063] In certain embodiments, L is a covalent bond or a bivalent, saturated or partially unsaturated, straight or branched C1-50 hydrocarbon chain, wherein 0-6 methylene units of L may optionally be replaced by -Cy-, -CHF-, -CF2-, -O-, -NR-, -SiR2-, -Si(OH)R- -Si(OH)2- , -P(O)OR-, -P(O)R-, -P(O)NR2-, -S-, -OC(O)-, -C(O)O-, -C(O)-, -S(O)-, -S(O)2-, -
Figure imgf000037_0001
wherein: each -Cy- is independently an optionally substituted bivalent ring selected from phenylenyl, an 8-10 membered bicyclic arylenyl, a 4-7 membered saturated or partially unsaturated carbocyclylenyl, a 6-11 membered saturated or partially unsaturated spiro carbocyclylenyl, an 8-10 membered bicyclic saturated or partially unsaturated carbocyclylenyl, a 4-7 membered saturated or partially unsaturated heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, a 6-11 membered saturated or partially unsaturated spiro heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, an 8-10 membered bicyclic saturated or partially unsaturated heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, a 5-6 membered heteroaryl enyl having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur, and an 8-10 membered bicyclic heteroaryl enyl having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur, each R is independently hydrogen, or an optionally substituted group selected from Ci- 6 aliphatic, phenyl, a 4-7 membered saturated or partially unsaturated heterocyclic having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur, and a 5-6 membered heteroaryl ring having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur, or: two R groups on the same nitrogen are optionally taken together with their intervening atoms to fornl a 4-7 membered saturated, partially unsaturated, or heteroaryl ring having 0-3 heteroatoms, in addition to the nitrogen, independently selected from nitrogen, oxygen, and sulfur, and; r is O, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10. [0064] In some embodiments, each -Cy- is independently an optionally substituted bivalent phenylenyl. In some embodiments, each -Cy- is independently an optionally substituted 8-10 membered bicyclic arylenyl. In some embodiments, each -Cy- is independently an optionally substituted 4-7 membered saturated or partially unsaturated carbocyclylenyl. In some embodiments, each -Cy- is independently an optionally substituted 6-11 membered saturated or partially unsaturated spiro-carbocyclylenyl. In some embodiments, each -Cy- is independently an optionally substituted 8-10 membered bicyclic saturated or partially unsaturated carbocyclylenyl. In some embodiments, each -Cy is independently an optionally substituted 4-7 membered saturated or partially unsaturated heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, each -Cy- is independently an optionally substituted 6-11 membered saturated or partially unsaturated spiro-heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, each -Cy- is independently an optionally substituted 8-10 membered bicyclic saturated or partially unsaturated heterocyclylenyl having 1-2 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, each -Cy- is independently an optionally substituted 5-6 membered heteroaryl enyl having 1-4 heteroatoms independently selected from nitrogen, oxygen, and sulfur. In some embodiments, each -Cy- is independently an optionally substituted 8-10 membered bicyclic heteroaryl enyl having 1-5 heteroatoms independently selected from nitrogen, oxygen, and sulfur.
[0065] In some embodiments, -Cy- is substituted with Ci-6 alkyl (e.g., methyl, ethyl, isopropyl). In some embodiments, -Cy- is substituted with oxo. In some embodiments, -Cy- is substituted with halogen. In some embodiments, -Cy- is substituted with fluoro. In some embodiments, -Cy- is substituted with geminal difluoro. In some embodiments, -Cy- is substituted with -OH. In some embodiments, -Cy- is substituted with -NR2.
[0066] In some embodiments, r is 0. In some embodiments, r is 1. In some embodiments, r is 2. In some embodiments, r is 3. In some embodiments, r is 4. In some embodiments, r is 5. In some embodiments, r is 6. In some embodiments, r is 7. In some embodiments, r is 8. In some embodiments, r is 9. In some embodiments, r is 10.
[0067] In some embodiments, L is -NR-(Ci-io aliphatic)-. In some embodiments, L is -(Ci- 10 aliphatic)- NR-(Cl-lOaliphatic)-. In some embodiments, L is -(C1-10 aliphatic)-NR- (CH2CH20)I-IOCH2CH2-. In some embodiments, L is -Cy-NR-(Ci-io aliphatic)-. In some embodiments, L is -Cy-(Ci-io aliphatic)-NR-. In some embodiments, L is -Cy-(Ci-io aliphatic)- NR-(Ci-io aliphatic)-. In some embodiments, L is -(Ci-io aliphatic)-Cy-NR-(Ci-io aliphatic)-. In some embodiments, L is -(Ci-io aliphatic)-Cy-(Ci-io aliphatic)-NR-. In some embodiments, L is -(Ci-io aliphatic)-Cy-(Ci-io aliphatic)-NR-(Ci-io aliphatic)-. In some embodiments, L is -Cy- (Ci-io aliphatic)-Cy-NR-. In some embodiments, L is -Cy-(Ci-io aliphatic)-NR-Cy-. In some embodiments, L is -Cy-(Ci-io aliphatic)-Cy-NR-(Ci-io aliphatic)-. In some embodiments, L is - Cy-(Ci-io aliphatic)-NR-Cy-(Ci-io aliphatic)-.
[0068] In some embodiments, L is -CONR-(Ci-io aliphatic)-. In some embodiments, L is - (Ci-io aliphatic)-CONR-(Ci-io aliphatic)-. In some embodiments, L is -(Ci-io aliphatic)-CONR- (CH2CH2O)i- 10CH2CH2-. In some embodiments, L is -Cy-CONR-(Ci-io aliphatic). In some embodiments, L is -Cy-(Ci- 10 aliphatic)-CONR-. In some embodiments, L is -Cy-(Ci-io aliphatic)-CONR-(Ci-io aliphatic)-. In some embodiments, L is -(C1-10 aliphatic)-Cy-CONR- (C1-10 aliphatic)-. In some embodiments, L is -(C1-10 aliphatic)-Cy-(Ci-io aliphatic)-CONR-. In some embodiments, L is -(C1-10 aliphatic)-Cy-(Ci-io aliphatic)- CONR-(Ci-io aliphatic)-. In some embodiments, L is -Cy-(Ci-io aliphatic)-Cy-CONR-. In some embodiments, L is -Cy-(Ci- 10 aliphatic)-CONR-Cy-. In some embodiments, L is -Cy-(Ci-io aliphatic)-Cy- CONR-(Ci-io aliphatic)-. In some embodiments, L is -Cy-(Ci-io aliphatic)-CONR-Cy-(Ci-io aliphatic)-.
[0069] In certain embodiments, L is any bivalent linker provided in WO 2024/064080, incorporated herein by reference in its entirey.
4. Compounds
[0070] In a first embodiment, provided is a compound of structural Formula I:
Figure imgf000039_0001
or a pharmaceutically acceptable salt thereof, wherein the variables are as described above.
[0071] In a second embodiment, R6 and R7 in the compound of Formula I or pharmaceutically acceptable salt thereof together with the nitrogen atom to which they are attached form a 4- to 14-membered monocyclic or bicyclic heterocyclyl or a 5 - to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with R12 and/or, as valency permits, optionally further substituted with 1 to 3 groups selected from RQ. [0072] In a third embodiment, the compound of Formula I is of the structural Formula II:
Figure imgf000040_0001
(II); or a pharmaceutically acceptable salt thereof, wherein the variables are as described above for Formula I or the second embodiment.
[0073] In a fourth embodiment, the compound of Formula I, or pharmaceutically acceptable salt thereof, is of the structural Formula HI, IV, V, or VII:
Figure imgf000040_0002
wherein the variables are as described above for Formula I or the second embodiment.
[0074] In a fifth embodiment, the compound of Formula I, or pharmaceutically acceptable salt thereof, is of the structural Formula VIII, VIII’, IX, X, XI, XII, or XIII:
Figure imgf000041_0001
wherein the variables are as described above for Formula I or the second embodiment.
[0075] In a sixth embodiment, the compound of Formula I, or pharmaceutically acceptable salt thereof, is of the structural Formula XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, xxvn, or XXVIII:
Figure imgf000041_0002
Figure imgf000042_0001
wherein the variables are as described above for Formula I or the second embodiment.
[0076] In a seventh embodiment, the compound of Formula I, or pharmaceutically acceptable salt thereof, is of the structural Formula XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXVII:
Figure imgf000043_0001
wherein the variables are as described above for Formula I or the second embodiment.
[0077] In an eighth embodiment, R3 in the compound of any one of Formulae I, II, III, iv, v, VII, VIII, ix, x, xi, xn, xm, xxi, xxn, xxm, xxiv, xxv, xxix, xxxi, XXXII, XXXIII, XXXIV, and XXXV or pharmaceutically acceptable salt thereof is selected from hydrogen, (Ci-C4)alkyl, hydroxyl, (Ci-C4)alkoxy, -(Ci-C4)alkylphenyl, and 4- to 6- membered heterocyclyl; or R3 and R4 are taken together on the same carbon atom to form a (C3-Ce)cycloalkyl, wherein the remaining variables are as described above for Formula I or the second embodiment. Alternatively, as part of an eighth embodiment, R4 in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, IX, X, XI, XII, XIII, XXI, XXII, XXIII, XXIV, XXV, XXIX, XXXI, XXXII, XXXIII, XXXIV, and XXXV or pharmaceutically acceptable salt thereof is selected from hydrogen (Ci-C4)alkyl, and hydroxyl; or R3 and R4 are taken together on the same carbon atom to form a (C3-C6)cycloalkyl, wherein the remaining variables are as described above for Formula I or the second embodiment. In another alternative, as part of an eighth embodiment, R3 in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, IX, X, XI, XII, XIII, XXI, XXII, XXIII, XXIV, XXV, XXIX, XXXI, XXXII, XXXIII, XXXIV, and XXXV or pharmaceutically acceptable salt thereof is selected from hydrogen, (Ci-C2)alkyl, hydroxyl, (Ci-C2)alkoxy, benzyl, and azetidinyl; or R3 and R4 are taken together on the same carbon atom to form a cyclopropyl, wherein the remaining variables are as described above for Formula I or the second embodiment. In yet another alternative, as part of an eighth embodiment, R3 and R4 in the compound of any one of Formulae I, II, HI, IV, V, VII, VIII, IX, X, XI, XII, XIII, XXI, XXII, XXIII, XXIV, XXV, XXIX, XXXI, xxxn, xxxm, XXXIV, and XXXV or pharmaceutically acceptable salt thereof are hydrogen, wherein the remaining variables are as described above for Formula I or the second embodiment.
[0078] In a ninth embodiment, R2 in the compound of any one of Formulae I, II, III, IV, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, xxxm XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from hydrogen and hydroxyl, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth embodiments. Alternatively, as part of a ninth embodiment, R2 in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, xxxm XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is hydrogen, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth embodiments.
[0079] In a tenth embodiment, R5 in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, IX, X, XI, XII, xm, XIV, XV, XVI, XVI’, XVII, XVIII, VIII’, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, xxxm XXXIV, XXXV, XXXVI, or XXXVII is hydrogen, wherein the remaining variables are as described above for Formula I or any one of the second, eighth and/or ninth embodiments. [0080] In an eleventh embodiment, R1 in the compound of any one of Formulae I, II, III, iv, v, vii, vm, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, xxxn, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from 8- to 10-membered fused bicyclic heteroaryl and aryl, each of which are substituted with -CRlaR2aP(O)ORlbOR2b or -CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to tenth embodiments. Alternatively, as part of an eleventh embodiment, R1 in the compound of any one of Formulae I, H, HI, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, xxxn, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from benzothiophenyl, indolyl, and naphthalenyl, each of which are substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to tenth embodiments. In another alternative, as part of an eleventh embodiment, R1 in the compound of any one of Formulae I, ii, in, iv, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm,
XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, xxvn, XXVIII, XXIX, XXX, XXXI,
XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVH or pharmaceutically acceptable salt
Figure imgf000045_0001
thereof is selected from,
Figure imgf000045_0002
remaining variables are as described above for Formula I or any one of the second and/or eighth to tenth embodiments. In yet another alternative, as part of an eleventh embodiment, R1 in the compound of any one of Formulae I, II, m, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV,
XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, xxxn, or XXXVII or pharmaceutically acceptable salt thereof
Figure imgf000045_0003
wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to tenth embodiments.
[0081] In a twelfth embodiment, Rla in the compound of any one of Formulae I, II, III, iv, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvni, xxix, xxx, xxxi, xxxn, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is hydrogen and R2a is fluoro or Rla is fluoro and R2a is fluoro, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to eleventh embodiments. Alternatively, as part of a fourteenth embodiment, Rla in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is fluoro and R2a is fluoro, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to eleventh embodiments.
[0082] In a thirteenth embodiment, Rlb and R2b in the compound of any one of Formulae i, ii, in, iv, v, vii, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVU or pharmaceutically acceptable salt thereof are each independently selected from hydrogen, (Ci-C4)alkyl, -[(Ci-C4)alkyl]-OC(O)- [(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci- C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl]- OH, phenyl, pyridinyl, and naphthalenyl, wherein said phenyl, pyridinyl, and naphthalenyl are each optionally and independently substituted with cyano, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to eleventh embodiments. Alternatively, as part of a thirteenth embodiment, Rlb and R2b in the compound of any one of Formulae I, II, in, IV, V, VH, VIII, VIII’, IX, X, XI, XII, XIII, xiv, xv, xvi, xvi’, XVII, xvni, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, XXVIII, XXIX, xxx, xxxi, xxxn, xxxm XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof are each -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl] , wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to eleventh embodiments. In another alternative, as part of a thirteenth embodiment, Rlb and R2b in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, viii’, ix, x, xi, XII, xm, xiv, xv, xvi, xvr, xvn, xvm, xx, xxi, xxn, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof are each hydrogen, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to eleventh embodiments.
[0083] In a fourteenth embodiment, -CRlaR2aP(O)ORlbOR2b in the compound of any one of Formulae I, II, III, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically
Figure imgf000047_0001
acceptable salt thereof is selected from
Figure imgf000048_0001
described above for Formula I or any one of the second and/or eighth to twelfth embodiments. Alternatively, as part of a fourteenth embodiment, -CRlaR2aP(O)ORlbOR2b in the compound of any one of Formulae I, H, HI, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from:
Figure imgf000049_0001
variables are as described above for Formula I or any one of the second and/or eighth to twelfth embodiments.
[0084] In a fourteenth embodiment, R6 and R7in the compound of any one of Formulae I, ii, in, iv, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, XX, XXI, XXII, XXIII, xxiv, xxv, xxvi, xxvn, xxvm, XXIX, xxx, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVH or pharmaceutically acceptable salt thereof together with the nitrogen atom to which they are attached form a 4- to 9-membered monocyclic or bicyclic heterocyclyl substituted with R12 and/or, as valency permits, optionally further substituted with 1 to 3 groups selected from RQ, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to thirteenth embodiments. Alternatively, as part of a fourteenth embodiment, R6 and R7 in the compound of any one of Formulae I, II, HI, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, xxn, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof together with the nitrogen atom to which they are attached form pyrrolidinyl, azetidinyl, or 4-azaspiro[2.4]heptanyl, each substituted with R12 and/or, as valency permits, optionally further substituted with 1 to 3 groups selected from RQ, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to thirteenth embodiments.
[0085] In a fifteenth embodiment, RQ in the compound of any one of Formulae I, II, III, iv, v, vii, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, XXIII, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, xxxn, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is cyano or 5- to 7-membered heteroaryl, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to fourteenth embodiments. Alternatively, as part of a fifteenth embodiment, RQin the compound of any one of Formulae i, ii, in, iv, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, XX, XXI, XXII, XXIII, xxiv, xxv, xxvi, xxvn, xxvm, XXIX, xxx, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVH or pharmaceutically acceptable salt thereof is cyano or pyridinyl, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to fourteenth embodiments.
[0086] In a sixteenth embodiment, R12 in the compound of any one of Formulae I, II, III, iv, v, vii, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, xxxn, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from -NHC(O)R10CE, -OR10CE, phenyl, pyridinyl, and pyridin-2(lH)-one, each substituted with R10CE, -OR10CE, -NH R10CE, or -[N(Ci-C4)alkyl]RlocE, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to fifteenth embodiments.
[0087] In a seventeenth embodiment, R10Cin the compound of any one of Formulae I, II, in, iv, v, vii, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, xxix, xxx, xxxi, xxxn, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from (Ci-Cio)alkylene and (C2-Cio)alkynelene each optionally substituted with one or more groups selected from halo and oxo, and wherein said (Ci-Ce)alkylene and (C2- Cio)alkynelene may also be optionally interrupted by one or more heteroatoms selected from S, N, and O, and/or optionally interrupted by one or more rings selected from 5- to 7- membered heteroaryl, (C3-Ce)cycloakyl, phenyl, and 4- to 7-membered heterocyclyl, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to sixteenth embodiments. Alternatively, as part of a seventeenth embodiment, R10Cin the compound of any one of Formulae I, H, HI, IV, V, VII, VHI, VIII’, IX, X, XI, XII, xm, xiv, xv, xvi, xvi’, XVII, xvm, xx, xxi, xxn, xxm, xxiv, xxv, xxvi, xxvn, xxvm, XXIX, XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from (Ci-Cio)alkylene, (C2- Cio)alkynelene, -(CH2)mC(O)NH[(CH2)O]v(CH2)n, -(CH2)O[(CH2)O]v(CH2)n, -(C2- Cs)alkynelene[4- to 7-membered heterocyclyl], 4- to 7-membered heterocyclyl, [(CH2)O]v(CH2)n, and -(CH2)nC(O)NH[4- to 7-membered heterocyclyl], wherein m, n, and v are each independently selected from 0, 1, 2, 3, 4, 5, and 6, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to sixteenth embodiments. In another alternative, as part of a seventeenth embodiment, R10C in the compound of any one of Formulae I, II, HI, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, xxn, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or
Figure imgf000051_0001
pharmaceutically acceptable salt thereof is selected from
Figure imgf000051_0002
ein the asterisk indicates the position to which E is attached, and wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to sixteenth embodiments.
[0088] In an eighteenth embodiment, E in the compound of any one of Formulae I, II, in, iv, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, xx, xxi, xxn, XXIII, xxiv, xxv, xxvi, xxvn, xxvni, xxix, xxx, xxxi, xxxn, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected from a CRBN, VHL, IAP, or MDM2 based E3 binder, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to seventeenth embodiments. Alternatively, as part of an eighteenth embodiment, E in the compound of any one of Formulae I, II, HI, IV, V, VII, VIII, VIII’, IX, X, XI, XII, XIII, XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, xxn, XXIII, XXIV, XXV, XXVI, XXVII, XXVIII, XXIX, XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVII or pharmaceutically acceptable salt thereof is selected
Figure imgf000051_0003
Figure imgf000052_0001
wherein:
Y and Y1 are each independently is O or CH2;
D is O, NH, or a bond;
U is absent or C(O); and
R is halo or cyano, wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to seventeenth embodiments. In another alternative, as part of an eighteenth embodiment, E in the compound of any one of Formulae i, 11, in, iv, v, VII, VIII, viii’, ix, x, xi, xn, xm, xiv, xv, xvi, xvi’, xvn, xvm, XX, XXI, XXII, XXIII, xxiv, xxv, xxvi, xxvn, xxvm, XXIX, xxx, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXXVH or pharmaceutically acceptable salt thereof is selected from
Figure imgf000052_0002
and,
Figure imgf000053_0001
wherein the remaining variables are as described above for Formula I or any one of the second and/or eighth to seventeenth embodiments. [0089] Compounds having the Formula I are further described in the Exemplification and are included in the present disclosure. Pharmaceutically acceptable salts thereof as well as the neutral forms are included.
4. Uses, Formulation and Administration
[0090] The compounds and compositions described herein are generally useful for modulating the activity of STAT proteins, in particular STAT3 and/or STAT6. In some aspects, the compounds, pharmaceutical acceptable salts, and pharmaceutical compositions described herein degrade STAT3 and/or STAT6.
[0091] In some aspects, the compounds and pharmaceutical compositions described herein are useful in a condition responsive to the modulation (or degradation) of STAT3 and/or STAT6. Thus, provided herein are methods of treating a condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6 in a subject, comprising administering to a subject in need thereof, a therapeutically effective amount of a compound described herein, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a disclosed compound or pharmaceutically acceptable salt thereof.
[0092] Also provided is the use of a compound described herein, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a disclosed compound or pharmaceutically acceptable salt thereof, for the manufacture of a medicament for treating a condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6. Also provided is a compound described herein, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising a disclosed compound or pharmaceutically acceptable salt thereof, for use in treating a condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6.
[0093] In one aspect, the condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6 include, but are not limited to, cancer, a neurodegenative disorder, a viral disease, an autoimmune disease, an inflammatory disorder, a hereditary disorder, a hormone-related disease, a metabolic disorder, conditions associated with organ transplantation, immunodeficiency disorders, a destructive bone disorder, a proliferative disorder, an infectious disease, a condition associated with cell death, thrombin-induced platelet aggregation, liver disease, pathologic immune conditions involving T cell activation, a cardiovascular disorder, or a CNS disorder.
[0094] In another aspect, the condition responsive to the modulation (e.g., degradation) of STAT3 and/or STAT6 include, but are not limited to, cancer (see, e.g., Turkson & Jove, Oncogene 2000, 19:6613-6626), diabetes (see. e.g., Gurzov et al., FEBS 2016, 283:3002), cardiovascular disease (see, e.g., Grote et al., Vase. Pharmacol. 2005, 43:2005), viral disease (see, e.g., Gao et al., J Hepatol. 2012, 57(2):430), autoimmune diseases such as lupus (see, e.g., Goropevsek et al., Clin. Rev. Alleg. & Immun. 2017, 52(2): 164), and rheumatoid arthritis (see, e.g., Walker & Smith, J. Rheumat. 2005, 32(9): 1650), autoinflammatory syndromes (see, e.g., Rauch et al., Jak-Stat 2013, 2(l):e23820), atherosclerosis (see, e.g., Ortiz-Munoz et al., Arterio., Thromho., Vase. Bio. 2009, 29:525), psoriasis (see, e.g., Andres et al., Exp. Derm. 2013, 22(5):323), allergic disorders (see, e.g., Oh et al., Eur. Respir. Rev. 2019, 19(115):46), inflammatory bowel disease (see. e.g., Sugimoto, World J Gastroenterol. 2008, 14(33):5110), inflammation (see, e.g., Tamiya et al., Arierio. Thrombo., Vase. Bio. 2011, 31 :980), acute and chronic gout and gouty arthritis, neurological disorders (see, e.g., Campbell, Brain Res. Rev. 2005, 48(2): 166), metabolic syndrome, immunodeficiency disorders such as AIDS and HIV (see, e.g., O’Shea et al., N. Engl. J.Med. 2013, 368: 161), destructive bone disorders (see, e.g., Jatiani et al., Genes & Can. 2011, l(10):979), osteoarthritis, proliferative disorders, Waldenstrom’s Macroglobulinemia (see, e.g., Hodge et al., Blood 2014, 123(7): 1055) infectious diseases, conditions associated with cell death, pathologic immune conditions involving T cell activation, and CNS disorders.
[0095] Proliferative disorders, include, but are not limited to a benign or malignant tumor, solid tumor, liquid tumor, carcinoma of the brain, kidney, liver, adrenal gland, bladder, breast, stomach, gastric tumors, ovaries, colon, rectum, prostate, pancreas, lung, vagina, cervix, testis, genitourinary tract, esophagus, larynx, skin, bone or thyroid, sarcoma, glioblastomas, neuroblastomas, multiple myeloma, gastrointestinal cancer, especially colon carcinoma or colorectal adenoma, a tumor of the neck and head, an epidermal hyperproliferation, psoriasis, prostate hyperplasia, a neoplasia, a neoplasia of epithelial character, adenoma, adenocarcinoma, keratoacanthoma, epidermoid carcinoma, large cell carcinoma, non-small- cell lung carcinoma, lymphomas, Hodgkins and Non-Hodgkins, a mammary carcinoma, follicular carcinoma, undifferentiated carcinoma, papillary carcinoma, seminoma, melanoma, an IL-I driven disorder, an MyD88 driven disorder, Smoldering of indolent multiple myeloma, or hematological malignancies (including leukemia, diffuse large B-cell lymphoma (DLBCL), ABC DLBCL, chronic lymphocytic leukemia (CLL), chronic lymphocytic lymphoma, primary effusion lymphoma, Burkitt lymphoma/leukemia, acute lymphocytic leukemia, B-cell prolymphocytic leukemia, lymphoplasmacytic lymphoma, Waldenstrom’s macroglobulinemia (WM), splenic marginal zone lymphoma, multiple myeloma, plasmacytoma, intravascular large B-cell lymphoma).
[0096] In some embodiments, the cancer to be treated is selected from glioma, breast cancer, prostate cancer, head and neck squamous cell carcinoma, skin melanomas, ovarian cancer, malignant peripheral nerve sheath tumors (MPNST), and pancreatic cancer. In other embodiments, the cancer to be treated is cancer selected from glioma, breast cancer, prostate cancer, head and neck squamous cell carcinoma, skin melanomas, ovarian cancer, malignant peripheral nerve shealth tumors (MPNST), pancreatic cancer, non-small cell lung cancer (NSCLC) including EGFR-mutant NSCLC, urothelial cancer, liver cancer, bile duct cancer, kidney cancer, colon cancer, esophageal cancer, gastric cancer, gastrointestinal stromal tumors, and hematological malignancies include lymphomas, leukemias, myelomas, myeloproliferative neoplasms and myelodysplastic syndromes. In other embodiments, the cancer is selected from solid tumors (e.g., prostate cancer, renal cancer, hepatic cancer, pancreatic cancer, gastric cancer, breast cancer, lung cancer, cancers of the head and neck, thyroid cancer, glioblastoma, Kaposi Is] sarcoma, Castleman® disease, uterine leiomyosarcoma, melanoma etc.), hematological cancers (e.g., lymphoma, leukemia such as acute lymphoblastic leukemia (ALL), acute myelogenous leukemia (AML) or multiple myeloma), and skin cancer such as cutaneous T-cell lymphoma (CTCL) and cutaneous B-cell lymphoma. Example CTCLs include Sezary syndrome and mycosis fungoides.
[0097] Compounds, salts, and compositions described herein are also useful in the treatment of inflammatory or obstructive airways diseases, resulting, for example, in reduction of tissue damage, airways inflammation, bronchial hyperreactivity, remodeling or disease progression. Inflammatory or obstructive airways diseases include asthma of whatever type or genesis including both intrinsic (non-allergic) asthma and extrinsic (allergic) asthma, mild asthma, moderate asthma, severe asthma, bronchitic asthma, exercise-induced asthma, occupational asthma and asthma induced following bacterial infection. Treatment of asthma is also to be understood as embracing treatment of subjects, e.g. of less than 4 or 5 years of age, exhibiting wheezing symptoms and diagnosed or diagnosable as "wheezy infants", an established patient category of major medical concern and now often identified as incipient or early-phase asthmatics.
[0098] Compounds, salts, and compositions described herein are also useful in the treatment of heteroimmune diseases including, but are not limited to, graft versus host disease, transplantation, transfusion, anaphylaxis, allergies (e.g., allergies to plant pollens, latex, drugs, foods, insect poisons, animal hair, animal dander, dust mites, or cockroach calyx), type I hypersensitivity, allergic conjunctivitis, allergic rhinitis, and atopic dermatitis.
[0099] Compounds, salts, and compositions described herein are also useful in the treatment of other inflammatory or obstructive airways diseases and conditions to which the present invention is applicable and include acute lung injury (ALI), adult/acute respiratory distress syndrome (ARDS), chronic obstructive pulmonary, airways or lung disease (COPD, COAD or COLD), including chronic bronchitis or dyspnea associated therewith, emphysema, as well as exacerbation of airways hyperreactivity consequent to other drug therapy, in particular other inhaled drug therapy. Compounds, salts, and compositions described herein are also useful in the treatment of bronchitis including, but not limited to, acute, arachidic, catarrhal, croupus, chronic or phthinoid bronchitis. Compounds, salts, and compositions described herein are also useful in the treatment of pneumoconiosis (an inflammatory, commonly occupational, disease of the lungs, frequently accompanied by airways obstruction, whether chronic or acute, and occasioned by repeated inhalation of dusts) of whatever type or genesis, including, for example, aluminosis, anthracosis, asbestosis, chalicosis, ptilosis, siderosis, silicosis, tabacosis and byssinosis.
[00100] Compounds, salts, and compositions described herein are also useful in the treatment of inflammatory or allergic conditions of the skin, for example psoriasis, contact dermatitis, atopic dermatitis, alopecia areata, erythema multiforma, dermatitis herpetiformis, scleroderma, vitiligo, hypersensitivity angiitis, urticaria, bullous pemphigoid, lupus erythematosus, systemic lupus erythematosus, pemphigus vulgaris, pemphigus foliaceus, paraneoplastic pemphigus, epidermolysis bullosa acquisita, acne vulgaris, and other inflammatory or allergic conditions of the skin.
[00101] Compounds, salts, and compositions described herein are also useful in the treatment of other diseases or conditions, such as diseases or conditions having an inflammatory component, for example, treatment of diseases and conditions of the eye such as ocular allergy, conjunctivitis, keratoconjunctivitis sicca, and vernal conjunctivitis, diseases affecting the nose including allergic rhinitis, and inflammatory disease in which autoimmune reactions are implicated or having an autoimmune component or etiology, including autoimmune hematological disorders (e.g. hemolytic anemia, aplastic anemia, pure red cell anemia and idiopathic thrombocytopenia), systemic lupus erythematosus, rheumatoid arthritis, polychondritis, scleroderma, Wegener granulamatosis, dermatomyositis, chronic active hepatitis, myasthenia gravis, Steven-Johnson syndrome, idiopathic sprue, autoimmune inflammatory bowel disease (e.g. ulcerative colitis and Crohn Is] disease), irritable bowel syndrome, celiac disease, periodontitis, hyaline membrane disease, kidney disease, glomerular disease, alcoholic liver disease, multiple sclerosis, endocrine opthalmopathy, Gravels] disease, sarcoidosis, alveolitis, chronic hypersensitivity pneumonitis, multiple sclerosis, primary biliary cirrhosis, uveitis (anterior and posterior), Sjogren’s syndrome, keratoconjunctivitis sicca and vernal keratoconjunctivitis, interstitial lung fibrosis, psoriatic arthritis, systemic juvenile idiopathic arthritis, cryopyrin-associated periodic syndrome, nephritis, vasculitis, diverticulitis, interstitial cystitis, glomerulonephritis (with and without nephrotic syndrome, e.g. including idiopathic nephrotic syndrome or minal change nephropathy), chronic granulomatous disease, endometriosis, leptospiriosis renal disease, glaucoma, retinal disease, ageing, headache, pain, complex regional pain syndrome, cardiac hypertrophy, musclewasting, catabolic disorders, obesity, fetal growth retardation, hyperchlolesterolemia, heart disease, chronic heart failure, mesothelioma, anhidrotic ectodermal dysplasia, Behcet’s disease, incontinentia pigmenti, Paget’s disease, pancreatitis, hereditary periodic fever syndrome, asthma (allergic and non- allergic, mild, moderate, severe, bronchitic, and exercise-induced), acute lung injury, acute respiratory distress syndrome, eosinophilia, hypersensitivities, anaphylaxis, nasal sinusitis, ocular allergy, silica induced diseases, COPD (reduction of damage, airways inflammation, bronchial hyperreactivity, remodeling or disease progression), pulmonary disease, cystic fibrosis, acidinduced lung injury, pulmonary hypertension, polyneuropathy, cataracts, muscle inflammation in conjunction with systemic sclerosis, inclusion body myositis, myasthenia gravis, thyroiditis, Addison’s disease, lichen planus, Type 1 diabetes, or Type 2 diabetes, appendicitis, atopic dermatitis, asthma, allergy, blepharitis, bronchiolitis, bronchitis, bursitis, cervicitis, cholangitis, cholecystitis, chronic graft rejection, colitis, conjunctivitis, Crohn’s disease, cystitis, dacryoadenitis, dermatitis, dermatomyositis, encephalitis, encephalomyelitis, endocarditis, endometritis, enteritis, enterocolitis, epicondylitis, epididymitis, fasciitis, fibrositis, gastritis, gastroenteritis, Henoch-Schonlein purpura, hepatitis, hidradenitis suppurativa, immunoglobulin A nephropathy, interstitial lung disease, laryngitis, mastitis, meningitis, myelitis myocarditis, myositis, nephritis, oophoritis, orchitis, osteitis, otitis, pancreatitis, parotitis, pericarditis, peritonitis, pharyngitis, pleuritis, phlebitis, pneumonitis, pneumonia, polymyositis, proctitis, prostatitis, pyelonephritis, rhinitis, salpingitis, sinusitis, stomatitis, synovitis, tendonitis, tonsillitis, ulcerative colitis, uveitis, vaginitis, vasculitis, or vulvitis.
[00102] In some embodiments, cardiovascular diseases which can be treated according to the present methods include, but are not limited to, restenosis, cardiomegaly, atherosclerosis, myocardial infarction, ischemic stroke, congestive heart failure, angina pectoris, reocclusion after angioplasty, restenosis after angioplasty, reocclusion after aortocoronary bypass, restenosis after aortocoronary bypass, stroke, transitory ischemia, a peripheral arterial occlusive disorder, pulmonary embolism, and deep venous thrombosis.
[00103] In some embodiments, the neurodegenerative disease which can be treated according to the present methods include, but are not limited to, Alzheimer® disease, Parkinson® disease, amyotrophic lateral sclerosis, Huntington® disease, cerebral ischemia, and neurodegenerative disease caused by traumatic injury, glutamate neurotoxicity, hypoxia, epilepsy, treatment of diabetes, metabolic syndrome, obesity, organ transplantation and graft versus host disease.
[00104] In certain aspects, a pharmaceutical composition described herein is formulated for administration to a patient in need of such composition. Pharmaceutical compositions described herein may be administered orally, parenterally, by inhalation spray, topically, rectally, nasally, buccally, vaginally or via an implanted reservoir. The term "parenteral" as used herein includes subcutaneous, intravenous, intramuscular, intra-articular, intra-synovial, intrasternal, intrathecal, intrahepatic, intralesional and intracranial injection or infusion techniques. In some embodiments, the compositions are administered orally, intraperitoneally or intravenously. Sterile injectable forms of the pharmaceutical compositions described herein may be aqueous or oleaginous suspension. These suspensions may be formulated according to techniques known in the art using suitable dispersing or wetting agents and suspending agents. [00105] In some aspects, the pharmaceutical compositions are administered orally.
[00106] A specific dosage and treatment regimen for any particular patient will depend upon a variety of factors, including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, rate of excretion, drug combination, and the judgment of the treating physician and the severity of the particular disease being treated. The amount of a compound described herein in the composition will also depend upon the particular compound in the pharmaceutical composition.
EXEMPLIFICATION
Preparation of Compounds
[00107] The compounds claimed herein were prepared following the procedures outlined in the following schemes. Compound names were generated using the software built into ChemDraw. To the extent that there are discrepancies between the name of a compound and its depicted structure, the depicted chemical structure is to be taken as the appropriate compound.
[00108] The following intermediates can be prepared according to the protocols described in PCT/US2023/010447, which is incorporated herein by reference in its entirety.
(3S,6S,9aS)-6-((tert-butoxycarbonyl)amino)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3 -carboxylic acid;
(3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5-oxodecahydropyrrolo[l,2-a]azocine- 3 -carboxylic acid;
4-nitrophenyl 5-((bis(2-(butyrylthio)ethoxy)phosphoryl) difluoromethyl) b enzo [b ] thi ophene-2-carb oxy 1 ate;
(difluoro(2-((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid;
4-nitrophenyl 5-((bis(2-(pivaloylthio)ethoxy) phosphoryl)difhroromethyl) b enzo [b ] thi ophene-2-carb oxy 1 ate;
(fluoro(2-((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid; perfluorophenyl 5-((lR)-fluoro((((S)-l-oxo-l-propoxypropan-2-yl)amino)(phenoxy) phosphoryl)methyl)benzo[b]thiophene-2-carboxylate; perfluorophenyl 5 -(( 1 S)-fluoro((((S)- 1 -oxo- 1 -propoxypropan-2-yl)amino)(phenoxy) phosphoryl)methyl)benzo[b]thiophene-2-carboxylate; tert-butyl 3 -(4-fluoropyri din-3 -yl)azeti dine- 1 -carboxylate; and tert-butyl (R)-6-(2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4- carb oxy late.
[00109] Preparation of S,S E((((difluoro(2-(((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4- hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l- oxobutan-2-yl)amino)butoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo [1,2-a] azepin-6-yl)carbamoyl)benzo [b]thiophen-5- yl)methyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 1) and (difluoro(2-(((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)butoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (Compound 2)
Figure imgf000061_0001
Figure imgf000062_0001
[00110] STEP A: tert-butyl 3-(4-(4-(benzyloxy)butoxy)pyridin-3-yl)azetidine-l-carboxylate [00111] NaH (72 mg, 1.78 mmol, 1.5 eq.) was added to a solution of 4 -(benzyl oxy )butan- l-ol (257 mg, 1.43 mmol, 1.2 eq.) in DMF (5 mL) at 0 °C and after stirring for 30 min, tertbutyl 3 -(4-fluoropyri din-3 -yl)azeti dine- 1 -carboxylate (300 mg, 1.19 mmol, 1.0 eq.) was added to the reaction. The reaction mixture was stirred at 25 °C for 10 hrs. After completion, the reaction mixture was quenched with saturated NH4CI solution. The residue was partitioned between EtOAc (50 mL x 3) and H2O (50 mL). The combined organic layers were washed with H2O (50 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl 3 -(4-(4-(benzyloxy )butoxy)pyri din-3 -yl)azeti dine- 1 -carboxylate (400 mg, 0.97 mmol, 82%) as a yellow oil. LCMS (ESI): m/z = 413 [M+H]+
[00112] ’H NMR (400 MHz, CDCI3) 8 8.38 (d, J= 5.6 Hz, 1H), 8.32 (s, 1H), 7.33 (s, 5H), 6.73 (d, J= 5.7 Hz, 1H), 4.52 (s, 2H), 4.26 (t, J= 8.7 Hz, 2H), 4.14-4.08 (m, 2H), 4.04 (t, J= 6.4 Hz, 2H), 3.91 (dd, J= 15.7, 7.3 Hz, 1H), 3.54 (t, J= 6.1 Hz, 2H), 1.95-1.90 (m, 2H), 1.81-1.76 (m, 2H), 1.45 (s, 9H).
[00113] STEP B: tert-butyl 3-(4-(4-hydroxybutoxy)pyridin-3-yl)azetidine-l -carboxylate
[00114] To a solution of tert-butyl 3 -(4-(4-(benzyloxy )butoxy)pyri din-3 -yl)azeti dine- 1- carboxylate (400 mg, 0.97 mmol, 1.0 eq.) in MeOH (15 mL) was added Pd/C (40 mg) under nitrogen. The suspension was degassed under vacuum and purged with H2 several times. The resulting mixture was stirred at room temperature for 4 hrs under H2 (15 Psi). After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with MeOH (20 mL). The combined filtrates were concentrated under reduced pressure. The residue was purified by Biotage® Cl 8 column chromatography to give tert-butyl 3-(4-(4- hy droxybutoxy)pyri din-3 -yl)azeti dine- 1 -carboxylate (300 mg, 0.93 mmol, 96%) as a yellow oil. LCMS (ESI): m/z = 323 [M+H]+.
[00115] STEP C: tert-butyl 3-(4-(4-oxobutoxy)pyridin-3-yl)azetidine-l -carboxylate [00116] A mixture of tert-butyl 3 -(4-(4-hy droxybutoxy)pyri din-3 -yl)azeti dine- 1- carboxylate (300 mg, 0.93 mmol, 1.0 eq.) and Dess-Martin (790 mg, 1.86 mmol, 2.0 eq.) in dry DCM (10 mL) was stirred at 25 °C for 3 hrs. After completion, the reaction mixture was quenched with JSfeSCL (50 mL, sat.) and extracted with DCM (50 mLx 3). The combined organic layers were washed with brine (50 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl 3 -(4-(4-oxobutoxy)pyri din-3 -yl)azeti dine- 1- carboxylate (200 mg, 0.63 mmol, 67%) as a yellow oil. LCMS (ESI): m/z = 321 [M+H]+. [00117] STEP D: tert-butyl 3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl) carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)amino)butoxy)pyridin-3- yl)azetidine-l -carboxylate
[00118] A mixture of tert-butyl 3-(4-(4-oxobutoxy)pyridin-3-yl)azetidine-l -carboxylate (200 mg, 0.63 mmol, 1.0 eq.) and (2S,4R)-l-((S)-2-amino-3,3-dimethylbutanoyl)-4-hydroxy- N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (323 mg, 0.75 mmol, 1.2 eq.) in MeOH (5 mL) was stirred at 25 °C for 2 hrs, Then NaBFLCN (80 mg, 1.25 mmol, 2.0 eq.) was added at 25 °C and the resulting mixture was stirred at 25 °C for 3 hrs. After completion, the reaction mixture was purified directly by Biotage® Cl 8 column chromatography to afford tert-butyl 3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)amino)butoxy)pyridin-3- yl)azetidine-l -carboxylate (280 mg, 0.38 mmol, 61%) as a yellow oil. LCMS (ESI): m/z = 735 [M+H]+.
[00119] STEP E: (2S,4R)-l-((S)-2-((4-((3-(azetidm-3-yl)pyridin-4-yl)oxy)butyl)ammo)- 3,3- dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2- carboxamide
[00120] To a solution of tert-butyl 3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)butoxy)pyri din-3 -yl)azeti dine- 1 -carboxylate (280 mg, 0.38 mmol, 1.0 eq.) in dry DCM (8 mL) was added TFA (2 mL) at 25 °C. The mixture was stirred at 25 °C for 2 hrs. After completion, the reaction mixture was concentrated under reduced pressure to give (2S,4R)-l-((S)-2-((4-((3-(azetidin-3-yl)pyridin-4-yl)oxy)butyl)amino)-3,3- dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (230 mg, quant.) as a yellow oil, which was used in next step without further purification. LCMS (ESI): m/z = 635 [M+H]+.
[00121] STEP F: tert-butyl ((3S, 6S, 9aS)-3-(3-(4-(4-(((S)-l-((2S, 4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)amino)butoxy)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a azepin- 6-yl) carbamate
[00122] To a mixture of (3S,6S,9aS)-6-((tert-butoxycarbonyl)amino)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carboxylic acid (136 mg, 0.43 mmol, 1.2 eq.) and HATU (206 mg, 0.54 mmol, 1.5 eq.) in DMF (5mL)were added DIEA (145 mg, 1.1 mmol, 3.0 eq.) and (2S,4R)-l-((S)-2-((4-((3-(azetidin-3-yl)pyridin-4-yl)oxy)butyl)amino)-3,3- dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (230 mg, 0.36 mmol, 1.0 eq.). The resulting mixture was stirred at 25 °C for 30 min. After completion, the reaction mixture was purified directly by Biotage® Cl 8 column chromatography to afford tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2- ((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin -l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)butoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamate (170 mg, 0.18 mmol, 51%) as a yellow oil. LCMS (ESI): m/z = 929.5 [M+H]+.
[00123] STEP G: (2S,4R)-l-((S)-2-((4-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)oxy)butyl)amino)-3, 3- dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide [00124] To a solution of tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2- ((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)butoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamate (170 mg, 0.18 mmol, 1.0 eq.) in dry DCM (4 mL) was added TFA (1 mL) at 25 °C. The mixture was stirred at 25 °C for 2 hrs. After completion, the reaction mixture was concentrated under reduced pressure to give (2S,4R)-l-((S)-2-((4-((3-(l- ((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3- yl)pyridin-4-yl)oxy)butyl)amino)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5- yl)benzyl)pyrrolidine-2-carboxamide (140 mg, quant.) as a yellow oil, which was used in next step without further purification. LCMS (ESI): m/z =829.4 [M+H]+.
[00125] STEP H: S,S^(((diftuoro(2-(((3S, 6S, 9aS)-3-(3-(4-(4-(((S)-l-((2S, 4R)-4-hydroxy- 2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)amino)butoxy)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a ]azepin-6-y I) carbamoyl) benzo [b ]thiophen-5-yl)methyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1- diyl)) dibutanethioate
[00126] To a mixture of (2S,4R)-l-((S)-2-((4-((3-(l-((3S,6S,9aS)-6-amino-5- oxooctahydro-lH-pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4- yl)oxy)butyl)amino)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5- yl)benzyl)pyrrolidine-2-carboxamide (60 mg, 72 pmol, 1.0 eq.) and DIEA (28 mg, 0.22 mmol, 3.0 eq.) in DMF(3 mL)was added perfluorophenyl 5-((bis(2- (butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (58 mg, 79 pmol, 1.1 eq.). The mixture was stirred at 25 °C for 30 min. After completion, the reaction mixture was purified by prep-HPLC to give S,SE((((difluoro(2-(((3S,6S,9aS)-3-(3-(4-(4- (((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)- 3,3-dimethyl-l-oxobutan-2-yl)amino)butoxy)pyridin-3-yl)azetidine-l-carbonyl)-5- oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)methyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (TFA salt) (Compound 1, 35 mg, 25 pmol, 35%) as a yellow oil. [00127] 1 H NMR (400 MHz, CDCh) 6 9.13 (s, 1H), 8.52 (s, 2H), 8.19-7.82 (m, 5H),
7.64-7.54 (m, 1H), 7.37-7.27 (m, 3H), 5.04-3.81 (m, 20H), 3.63-3.44 (m, 1H), 3.35-3.00 (m, 6H), 2.60-2.43 (m, 7H), 2.39-1.57 (m, 20H), 1.11 (s, 9H), 0.92 (t, J= 7.3 Hz, 6H).
[00128] LCMS (ESI): m/z = 1379.5 [M+H]+.
[00129] STEP I: (diftuoro(2-(((3S, 6S, 9aS)-3-(3-(4-(4-(((S)-l-((2S, 4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)amino)butoxy)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid
[00130] To a mixture of (2S,4R)-l-((S)-2-((4-((3-(l-((3S,6S,9aS)-6-amino-5- oxooctahydro-lH-pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4- yl)oxy)butyl)amino)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5- yl)benzyl)pyrrolidine-2-carboxamide (40 mg, 48 pmol, 1.0 eq.) and DIEA (18 mg, 0.14 mmol, 3.0 eq.) in DMF (3 mL) was added (difluoro(2- ((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (27 mg, 57 pmol, 1.2 eq.). The mixture was stirred at 25 °C for 30 min. After completion, the reaction mixture was purified by prep-HPLC to give (difluoro(2-(((3S,6S,9aS)-3-(3-(4-(4-(((S)-l- ((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3- dimethyl-l-oxobutan-2-yl)amino)butoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro- lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b] thiophen-5-yl)methyl)phosphonic acid (TFA salt) (Compound 2, 20 mg, 18 pmol, 37%) as a yellow oil.
[00131] ’H NMR (400 MHz, DMSO- 6) 6 8.99 (s, 1H), 8.76-8.51 (m, 4H), 8.27-7.99 (m, 3H), 7.65-7.54 (m, 1H), 7.48-7.31 (m, 5H), 4.64-4.56 (m, 2H), 4.48-4.41 (m, 2H), 4.38-4.32 (m, 2H), 4.25-4.21 (m, 2H), 4.05-3.98 (m, 4H), 3.87-3.80 (m, 4H), 3.53-3.46 (m, 2H), 2.95- 2.84 (m, 2H), 2.44 (s, 3H), 2.21-2.09 (m, 2H), 2.06-1.56 (m, 15H), 1.17-0.92 (m, 9H).
[00132] LCMS (ESI): m/z = 1119.4 [M+H]+.
[00133] Preparation of trans-((2-(((3S,6S,10aS)-3-(3-cyano-4-(3-(4-(4-(2,6- dioxopiperidin-3-yl)phenoxy)butoxy)phenyl)pyrrolidine-l-carbonyl)-5- oxodecahydropyrrolo [1,2-a] azocin-6-yl)carbamoyl)benzo [b]thiophen-5- yl)difluoromethyl)phosphonic acid (Compound 3) and trans-S,SB(((((2-(((3S,6S,10aS)-3- (3-cyano-4-(3-(4-(4-(2,6-dioxopiperidin-3-yl)phenoxy)butoxy)phenyl)pyrrolidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate
(Compound 4)
Figure imgf000067_0001
MsCI, TEA
Figure imgf000067_0002
Figure imgf000067_0003
Figure imgf000067_0004
Figure imgf000067_0005
Figure imgf000068_0001
Figure imgf000069_0001
[00134] STEP A: (E)-3-(3-methoxyphenyl)acrylonitrile
[00135] To a solution of diethyl (cyanomethyl)phosphonate (13.7 g, 77.2 mmol, 1.05 eq.) in THF (200 mL ) was added t-BuOK (9.06 g, 80.9 mmol, 1.1 eq.) at 0 °C, the solution was stirred for 30 min, then 3 -methoxybenzaldehyde (10 g, 73.5 mmol, 1.0 eq.) was added to the solution. The solution was stirred at room temperature for 30 min. After completion, H2O (100 mL) was added to the solution, the solution was extracted with EtOAc (200 mL x 3). The organic layers were combined and washed with brine (100 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford (E)-3-(3-methoxyphenyl)acrylonitrile (11.5 g, 72.3 mmol, 94%) as a white solid. LC-MS (ESI) m/z = 160 [M+H]+.
[00136] STEP B: trans- l-benzyl-4-( 3-methoxyphenyl)pyrrolidine-3-carbonitrile
[00137] To a solution of N-benzyl-l-methoxy-N-((trimethylsilyl)methyl)methanamine (16 g, 69.2 mmol, 1.0 eq.) in DCM (10 mL ) were added (E)-3-(3-methoxyphenyl)acrylonitrile (11 g, 69.2 mmol, 1.0 eq.) and TFA (1.58 g, 13.8 mmol, 0.2 eq.). The solution was stirred at room temperature overnight. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford trans- l-benzyl-4-(3-methoxyphenyl)pyrrolidine-3 -carbonitrile (13.1 g, 44.9 mmol, 65%) as a yellow oil. LC-MS (ESI) m/z = 293 [M+H]+.
[00138] STEP C: trans-4-(3-methoxyphenyl)pyrrolidine-3-carbonitrile
[00139] To a solution of trans-l-benzyl-4-(3-methoxyphenyl)pyrrolidine-3-carbonitrile (10.7 g, 36.6 mmol, 1.0 eq.) in CHCI3 (110 mL) were added ACECI (26.2 g, 183 mmol, 5.0 eq.), the resulting mixture was stirred at 80 °C for 16 hrs. After completion, the reaction mixture concentrated under reduced pressure. The residue was dissolved in MeOH (100 mL) and stirred at 75 °C for 3 hrs. The mixture was concentrated under reduced pressure to afford trans-4-(3-methoxyphenyl)pyrrolidine-3 -carbonitrile (7.4 g, crude) as a yellow oil. LCMS (ESI): m/z =203.2 [M+H]+.
[00140] STEP D : trans-4-(3-hydroxyphenyl)pyrrolidine-3-carboxamide
[00141] To a solution of trans-4-(3-methoxyphenyl)pyrrolidine-3 -carbonitrile (7.4 g, 36.6 mmol, 1.0 eq.) in CHCh (80 mL) were added TMSI (22 g, 110 mmol, 3.0 eq.), the resulting mixture was stirred at 60 °C for 16 hrs. After completion, the reaction mixture concentrated under reduced pressure to afford trans-4-(3-hydroxyphenyl)pyrrolidine-3 -carboxamide (7.54 g, crude) as a yellow solid. LCMS (ESI): m/z =207.2 [M+H]+.
[00142] STEP E : trans-tert-butyl 3-carbamoyl-4-(3-hydroxyphenyl)pyrrolidine-l- carboxylate
[00143] To a solution of trans-4-(3-hydroxyphenyl)pyrrolidine-3 -carboxamide (7.2 g, 34.9 mmol, 1.0 eq.) and NaHCCh (16.1 g, 191.5 mmol, 5.5 eq.) in THF/H2O (200 mL/40 mL) was added BOC2O (16.6 g, 76.6 mmol, 2.2 eq.) at 25 °C. The resulting mixture was stirred for 16 hrs. After completion, the reaction mixture was filtered and the filtrate was concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford trans-tert-butyl 3-carbamoyl-4-(3-hydroxyphenyl)pyrrolidine-l-carboxylate (7.0 g, 22.9 mmol, 66%) as a yellow oil. LCMS (ESI): m/z =307.2 [M+H]+.
[00144] STEP F : trans-tert-butyl 3-cyano-4-(3-hydroxyphenyl)pyrrolidine-l -carboxylate [00145] To a solution of trans-tert-butyl 3-carbamoyl-4-(3-hydroxyphenyl)pyrrolidine-l- carboxylate (6.8 g, 22.2 mol, 1.0 eq.) in DCM (100 mL) were added TFAA (6.07 g, 28.9 mol, 1.3 eq.) dropwise at 0 °C. After addition, the resulting mixture was warmed up to room temperature and stirred for 16 hrs. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by Cl 8 column chromatography to afford trans-tert-butyl 3 -cyano-4-(3-hydroxyphenyl)pyrrolidine-l -carboxylate (5.0 g, 17.4 mmol, 78%) as a yellow oil. LCMS (ESI): m/z = 289.2 [M+H]+.
[00146] STEP G: 4-(benzyloxy)butyl me thane sulfonate
[00147] To a solution of 4-(benzyloxy)butan-l-ol (1.0 g, 5.56 mmol, 1.0 eq.) in DCM (10 mL) were added TEA (842 mg, 8.34 mmol, 1.5 eq.) and MsCl (764 mg, 6.67 mmol, 1.2 eq.) at 0 °C. After addition, the resulting mixture was warmed up to room temperature and stirred for 1 hr. After completion, the reaction mixture was diluted with H2O (10 mL), then extracted with EtOAc (15 mL x 3). The organic layers were combined and washed with HC1 (IN) and brine (20 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford 4- (benzyloxy)butyl methanesulfonate (1.3 g, 5.04 mmol, 91%) as a yellow oil.
[00148] *HNMR (400 MHz, CDC13) 8 7.40-7.26 (m, 5H), 4.50 (s, 2H), 4.26 (t, J= 6.4 Hz, 2H), 3.51 (t, J= 6.1 Hz, 2H), 2.97 (s, 3H), 1.94-1.81 (m, 2H), 1.75-1.71 (m, 2H).
[00149] STEP H: 4-(2,6-bis(benzyloxy)pyridin-3-yl)phenol
[00150] To a solution of 2,6-bis(benzyloxy)-3-bromopyridine (10.0 g, 27.1 mmol, 1.0 eq.) and (4-hydroxyphenyl)boronic acid (3.74 g, 27.1 mmol, 1.0 eq.) in dioxane/H2O (10 mL, v/v = 5: 1) were added K2CO3 (11.2 g, 81.3 mmol, 3.0 eq.) and Pd(dppf)C12 (983 mg, 1.36 mmol, 0.05 eq), and the resulting mixture was stirred at 100 °C for additional 12 hrs. After completion, the reaction mixture was diluted with H2O (100 mL), extracted with EtOAc (100 mL x 3). The organic layers were combined and washed with brine (100 mL), dried over anhydrous ISfeSCU, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford 4-(2,6-bis(benzyloxy)pyridin-3- yl)phenol (8.0 g, 20.9 mmol, 77%) as a white solid. LCMS (ESI): m/z = 384 [M+H]+.
[00151] STEP I: 4-(benzyloxy)butyl me thane sulfonate
[00152] To a solution of 4-(2,6-bis(benzyloxy)pyridin-3-yl)phenol (1.3 g, 5.03 mmol, 1.0 eq.) and K2CO3 (1.39 g, 10.1 mmol, 2.0 eq.) in DMF (20 mL) were added 4-(benzyloxy)butyl methanesulfonate (1.95 g, 7.55 mmol, 1.5 eq.) and DMAP (61 mg, 0.50 mmol, 0.1 eq.) at room temperature. After addition, the resulting mixture was heated at 50 °C and stirred for 1 hr. After completion, the reaction mixture was diluted with H2O (20 mL), then extracted with EtOAc (50 mL x 3). The organic layers were combined and washed with brine (20 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford 4-(benzyloxy)butyl methanesulfonate (1.98 g, 3.63 mmol, 70%) as a colorless oil.
[00153] *HNMR (400 MHz, CDCI3) 6 7.57 (d, J= 8.0 Hz, 1H), 7.51-7.26 (m, 17H), 6.90 (d, J= 8.7 Hz, 2H), 6.45 (d, J= 8.0 Hz, 1H), 5.42 (s, 2H), 5.35 (s, 2H), 4.52 (s, 2H), 4.01 (t, J = 6.2 Hz, 2H), 3.56 (t, J= 6.2 Hz, 2H), 1.95- 1.86 (m, 2H), 1.86-1.74 (m, 2H).
[00154] STEP J: 3-(4-(4-hydroxybutoxy)phenyl)piperidine-2, 6-dione
[00155] To a solution of 4-(benzyloxy)butyl methanesulfonate (1.9 g, 3.49 mmol, 1 eq.) in MeOH (20 mL) was added Pd/C (200 mg) under nitrogen. The suspension was degassed under vacuum and purged with H2 several times. The resulting mixture was stirred at room temperature for 14 hrs. After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with MeOH (20 mL). The combined filtrates were concentrated to dryness to give 3-(4-(4-hydroxybutoxy)phenyl)piperidine-2, 6-dione (900 mg, 3.25 mmol, 93%) as a white solid. LCMS (ESI): m/z = 2T&.2 (M+H)+.
[00156] STEP K: 4-(4-(2, 6-dioxopiperidin-3-yl)phenoxy)butyl methane sulfonate [00157] To a solution of 3-(4-(4-hydroxybutoxy)phenyl)piperidine-2, 6-dione (100 mg, 0.36 mmol, 1.0 eq.) in DCM (3 mL) were added TEA (55 mg, 0.54 mmol, 1.5 eq.) and MsCl (50 mg, 0.43 mmol, 1.2 eq.) at 0 °C. After addition, the resulting mixture was warmed up to room temperature and stirred for 1 hr. After completion, the reaction mixture was diluted with H2O (10 mL), then extracted with EtOAc (15 mL x 3). The organic layers were combined and washed with brine (10 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford 4-(4-(2,6-dioxopiperidin-3-yl)phenoxy)butyl methanesulfonate (116 mg, 0.33 mmol, 91%) as a white solid. LCMS (ESI): m/z = 356 (M+H)+.
[00158] STEP L: trans-tert-butyl 3-cyano-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-l -carboxylate
[00159] To a solution of trans-tert-butyl 3-cyano-4-(3-hydroxyphenyl)pyrrolidine-l- carboxylate (94 mg, 0.33 mmol, 1.0 eq.) and K2CO3 (91 mg, 0.66 mmol, 2.0 eq.) in DMF (2 mL) were added 4-(4-(2,6-dioxopiperidin-3-yl)phenoxy)butyl methanesulfonate (116 mg, 0.33 mmol, 1.5 eq.) at room temperature. After addition, the resulting mixture was heated at 60 °C and stirred for 1 hr. After completion, the reaction mixture was diluted with H2O (10 mL), then extracted with EtOAc (10 mL x 3). The organic layers were combined and washed with brine (10 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford trans-tert- butyl 3-cyano-4-(3-(4-(4-(2,6-dioxopiperidin-3-yl)phenoxy)butoxy)phenyl)pyrrolidine-l- carboxylate (93 mg, 0.17 mmol, 52%) as a colorless oil. LCMS (ESI): m/z = 548.3 (M+H)+.
[00160] STEP M: trans-4-(3-(4-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-3-carbonitrile
[00161] To a solution of trans-tert-butyl 3-cyano-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-l -carboxylate (93 mg, 0.17 mmol, 1.0 eq) in DCM (2 mL) was added TFA ( 1 mL) at 25 °C. The mixture was stirred at room temperature for 0.5 hrs. After completion, the reaction mixture was concentrated under reduced pressure to afford trans-4-(3-(4-(4-(2,6-dioxopiperidin-3-yl)phenoxy)butoxy)phenyl)pyrrolidine-3-carbonitrile (76 mg, quant.) as a yellow oil, which was used in next step without further purification. LCMS (ESI): m/z = 448.2 (M+H)+.
[00162] STEP N: trans-tert-butyl ((3S,6S,10aS)-3-(3-cyano-4-(3-(4-(4-(2,6- dioxopiperidin-S-yljphenoxy) butoxy) phenyl) pyrrolidine- l-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
[00163] A solution of (3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (55 mg, 0.17 mmol, 1.0 eq.), DIEA (110 mg, 0.85 mmol, 5.0 eq.) and HATU (78 mg, 0.20 mmol, 1.2 eq.) in DMF (2 mL) was stirred for 20 min, then trans-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-3-carbonitrile (76 mg, 0.17 mmol, 1.0 eq.) were added, and the resulting mixture was stirred at room temperature for additional 2 hrs. After completion, the reaction was purified by Cl 8 column to afford trans-tert-butyl ((3S,6S,10aS)- 3-(3-cyano-4-(3-(4-(4-(2,6-dioxopiperidin-3-yl)phenoxy)butoxy)phenyl)pyrrolidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (108 mg, 0.14 mmol, 82%) as a white solid. LCMS (ESI): m/z = 756.4 [M+H]+.
[00164] STEP O: trans- 1-((3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2-a]azocine- 3-carbonyl)-4-(3-(4-(4-(2,6-dioxopiperidin-3-yl)phenoxy)butoxy)phenyl)pyrrolidine-3- carbonitrile
[00165] To a solution of trans-tert-butyl ((3S,6S,10aS)-3-(3-cyano-4-(3-(4-(4-(2,6- dioxopiperidin-3-yl)phenoxy)butoxy)phenyl)pyrrolidine-l-carbonyl)-5- oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (100 mg, 0.132 mmol, 1.0 eq) in DCM (3 mL) was added TFA ( 1 mL) at 25 °C. The mixture was stirred at 25 °C for 0.5 hrs. LCMS indicated the complete consumption of the starting material. The solution was concentrated under reduce pressure to give trans-l-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2- a]azocine-3-carbonyl)-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-3-carbonitrile (100 mg, crude) as a yellow oil. LCMS (ESI): m/z = 656 [M+H]+.
[00166] STEP P: trans-((2-(((3S, 6S, 10aS)-3-(3-cyano-4-(3-(4-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid
[00167] To a solution of trans-l-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2- a]azocine-3-carbonyl)-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-3-carbonitrile (50 mg, 75 pmol, 1.0 eq.) in DMF (1 mL) were added DIEA (98 mg, 0.76 mmol, 10 eq.) and (difluoro(2- ((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (32 mg, 68 pmol, 0.9 eq.) at 25 °C. The reaction mixture was stirred at 25 °C for 0.5 hrs. After completion, the reaction mixture was purified by prep-HPLC to afford trans-((2- (((3S,6S,10aS)-3-(3-cyano-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound s, 15 mg, 16 pmol, 24%) as a white solid.
[00168] ’H NMR (400 MHz, DMSO- 6) 5 10.89-10.66 (m, 1H), 8.91-8.78 (m, 1H), 8.37- 8.28 (m, 1H), 8.18-8.03 (m, 2H), 7.64-7.54 (m, 1H), 7.33-7.23 (m, 1H), 7.15-7.08 (m, 2H), 7.07-6.94 (m, 2H), 6.93-6.83 (m, 3H), 4.98-4.91 (m, 1H), 4.59-4.53 (m, 1H), 4.35-4.21 (m, 2H), 4.02-3.88 (m, 3H), 3.84-3.73 (m, 2H), 3.71-3.60 (m, 1H), 3.57-3.46 (m, 1H), 3.34-3.22 (m, 1H), 3.16-3.01 (m, 1H), 2.71-2.59 (m, 1H), 2.35-2.12 (m, 2H), 2.07-1.71 (m, 13H), 1.69- 1.45 (m, 3H), 1.30-1.12 (m, 2H).
[00169] LCMS (ESI): m/z = 946 [M+H]+.
[00170] STEP Q: trans-S,S^(((((2-(((3S,6S,10aS)-3-(3-cyano-4-(3-(4-(4-(2,6- dioxopiperidin-3-yl)phenoxy) butoxy) phenyl) pyrrolidine- l-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate
[00171] To a solution of trans-l-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2- a]azocine-3-carbonyl)-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-3-carbonitrile (50 mg, 75 pmol, 1.0 eq.) in DMF (1 mL) were added DIEA (98 mg, 0.76 mmol, 10 eq.) and 4-nitrophenyl 5-((bis(2- (butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (45 mg, 65 pmol, 0.87 eq.) at 25 °C. The reaction mixture was heated to 40 °C and stirred at 40 °C for 12 hrs. After completion, the reaction mixture was purified by prep-HPLC to afford trans- S,SE(((((2-(((3S,6S,10aS)-3-(3-cyano-4-(3-(4-(4-(2,6-dioxopiperidin-3- yl)phenoxy)butoxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l- diyl)) dibutanethioate (Compound 4, 15 mg, 15 pmol, 24%) as a white solid.
[00172] ’H NMR (400 MHz, DMSO- 6) 5 10.85-10.72 (m, 1H), 8.99-8.85 (m, 1H), 8.40- 8.30 (m, 1H), 8.27-8.11 (m, 2H), 7.63-7.54 (m, 1H), 7.33-7.24 (m, 1H), 7.16-7.07 (m, 2H), 7.07-6.93 (m, 2H), 6.93-6.82 (m, 3H), 5.06-4.89 (m, 1H), 4.64-4.46 (m, 1H), 4.41-3.44 (m, 16H), 3.20-3.07 (m, 4H), 2.71-2.58 (m, 1H), 2.58-2.52 (m, 4H), 2.36-1.42 (m, 22H), 1.34-
1.14 (m, 1H), 0.93-0.78 (m, 6H).
[00173] LCMS (ESI): m/z = 1206 [M+H]+.
[00174] Preparation of ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)- l-oxoisoindolin-4-yl)oct-7-yn-l-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro [2.4] heptane-4-carbonyl)-5 oxodecahydropyrrolo [1,2-a] azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 5) and S,SB(((((2-(((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oct-7-yn-l-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane- 4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate
(Compound 5)
Figure imgf000076_0001
Figure imgf000077_0001
[00175] STEP A: 8-Iodooct-l-yne
[00176] To a solution of oct-7-yn-l-ol (2 g, 15.8 mmol, 1.0 eq.) in DCM (15 mL ) were added TEA (3.21 g, 31.6 mmol, 2.0 eq.) and MsCl (2.18 g, 19.0 mmol, 1.2 eq.) at 0 °C. The reaction mixture was stirred at room temperature for 1 hr. After completion, the reaction mixture was diluted with H2O (30 mL) and extracted with DCM (30 mL x 2). The combined organic layers were washed with brine (20 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure to afford oct-7-yn-l-yl methanesulfonate (4.86 g, 15.8 mmol, 99%). To a solution of oct-7-yn-l-yl methanesulfonate (4.86 g, 15.8 mmol, 1.0 eq.) in 2-butanone (30 mL ) was added Nal (7.14 g, 47.4 mmol, 3.0 eq.). The reaction mixture was stirred at 85 °C for 12 hrs. After completion, the reaction mixture was quenched with Na2SOs (40 mL, saturated aqueous solution) and extracted with EtOAc (30 mL x 2). The combined organic layers were washed with brine (20 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford 8-iodooct-l-yne (3.1 g, 13.1 mmol, 83%) as a light oil. [00177] 1H NMR (400 MHz, DMSO- 6) 5 3.30-3.23 (m, 2H), 2.76-2.67 (m, 1H), 2.18- 2.10 (m, 2H), 1.81-1.69 (m, 2H), 1.47-1.31 (m, 6H).
[00178] STEP B: tert-butyl (R)-6-(l-(oct-7-yn-l-yl)-2-oxo-l,2-dihydropyridm-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carboxylate
[00179] To a solution of 8-iodooct-l-yne (245 mg, 1.04 mmol, 1.0 eq.) in DMF (4 mL) were added tert-butyl (R)-6-(2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4- carboxylate (300 mg, 1.04 mmol, 1.0 eq.) and K2CO3 (431 mg, 3.12 mmol, 3.0 eq.). The reaction mixture was stirred at 45 °C for 12 hrs . After completion, the reaction mixture was purified directly by Biotage® Cl 8 column chromatography to afford tert-butyl (R)-6-(l-(oct- 7-yn-l-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (260 mg, 0.65 mmol, 63%) as a light oil. LCMS (ESI): m/z = 399 [M+H]+.
[00180] ’H NMR (400 MHz, DMSO- 6) 5 7.61 (d, J= 7.0 Hz, 1H), 6.34-6.15 (m, 2H), 3.92-3.76 (m, 3H), 3.35-3.24 (m, 2H), 2.81-2.68 (m, 1H), 2.28-2.08 (m, 3H), 2.03-1.89 (m, 1H), 1.63-1.54 (m, 2H), 1.49-1.20 (m, 17H), 0.50 (s, 2H).
[00181] STEP C: tert-butyl (6R)-6-(l-(8-(2-(2,6-dioxopiperidm-3-yl)-l-oxoisoindolm-4- yl)oct-7-yn-l-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate [00182] To a solution of tert-butyl tert-butyl (R)-6-(l-(oct-7-yn-l-yl)-2-oxo-l,2- dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (257 mg, 0,65 mmol, 1.1 eq.), 3- (4-bromo-l-oxoisoindolin-2-yl)piperidine-2, 6-dione (190 mg, 0.59 mmol, 1.0 eq.), CS2CO3 (575 mg, 1.76 mmol, 3.0 eq.) and 4A molecular sieve (100 mg) in DMF (15 mL) were added Cui (22 mg, 0.12 mmol, 0.2 eq.) and Pd(dppf)C12 (43 mg, 59 pmol, 0.1 eq.). And the reaction mixture was stirred at 80 °C overnight under N2. The reaction mixture was diluted with H2O (20 mL) and extracted with EtOAc (20 mL x 2). The combined organic layers were washed with brine (10 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by Cl 8 column chromatography to give tert -butyl (6R)-6-(l-(8-(2- (2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oct-7-yn-l-yl)-2-oxo-l,2-dihydropyridin-4- yl)-4-azaspiro[2.4]heptane-4-carboxylate (160 mg, 0.25 mmol, 42%) as a yellow solid. LCMS (ESI): m/z = 641 [M+H]+.
[00183] STEP D: 3-(l-oxo-4-(8-(2-oxo-4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H)~ yl)oct-l-yn-l-yl)isoindolin-2-yl)piperidine-2, 6-dione
[00184] To a solution of tert-butyl (6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oct-7-yn-l-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4- carboxylate (160 mg, 0.25 mmol, 1.0 eq.) in DCM (5 mL) was added TFA (2 mL) and the reaction mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure to get crude 3-(l-oxo-4-(8-(2-oxo- 4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H)-yl)oct-l-yn-l-yl)isoindolin-2-yl)piperidine- 2, 6-dione (160 mg, quant.) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 541 [M+H]+.
[00185] STEP E: tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oct- 7-yn-l-yl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4- carbonyl)-5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
[00186] To a solution of (3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (96 mg, 0.29 mmol, 1.2 eq.) and HATU (139 mg, 0.37 mmol, 1.5 eq.) in DMF (1 mL) were added 3-(l-oxo-4-(8-(2-oxo-4- ((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H)-yl)oct-l-yn-l-yl)isoindolin-2-yl)piperidine- 2, 6-dione (160 mg, 0.24 mmol, 1.0 eq.) and DIEA (95 mg, 0.73 mmol, 3 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was purified by Biotage® Cl 8 column chromatography to get tert -butyl ((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oct-7-yn-l- yl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5- oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (130 mg, 0.15 mmol, 56%) as a white solid. LCMS (ESI): m/z = 849 [M+H]+.
[00187] STEP F: 3-(4-(8-( 4-( (R)-4-(( 3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1,2- a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin-l(2H)-yl)oct-l-yn-l-yl)-l- oxoisoindolin-2-yl)piperidine-2, 6-dione
[00188] To a solution of tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin- 3-yl)-l-oxoisoindolin-4-yl)oct-7-yn-l-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (130 mg, 0.15 mmol, 1.0 eq.) in DCM (5 mL) was added TFA (2 mL) and the reaction mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure to get crude 3-(4-(8-(4-((R)-4-((3S,6S,10aS)-6- amino-5-oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2- oxopyridin- 1 (2H)-yl)oct- 1 -yn- 1 -yl)- 1 -oxoi soindolin-2-yl)piperidine-2, 6-dione (120 mg, quant.) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 749 [M+H]+.
[00189] STEP G: ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oct- 7-yn-l-yl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4- carbonyl)-5 oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphonic acid
[00190] To a solution of 3-(4-(8-(4-((R)-4-((3S,6S, 10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin- l(2H)-yl)oct-l-yn-l-yl)-l-oxoisoindolin-2-yl)piperidine-2, 6-dione (50 mg, 67 pmol, 1.0 eq.) in DMF (1 mL) were added (difluoro(2-((perfluorophenoxy)carbonyl)benzo[b]thiophen-5- yl)methyl)phosphonic acid (32 mg, 67 pmol, 1.0 eq.) and TEA (20 mg, 200 pmol, 3.0 eq.). The resulting mixture was stirred at 40 °C for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by prep-HPLC to get ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oct- 7-yn-l-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5 oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphonic acid (Compound 5, 16.5 mg, 16 pmol, 24% ) as a white solid. [00191] 1 H NMR (400 MHz, DMSO- 6) 5 10.98 (s, 1H), 8.85 (d, J= 7.1 Hz, 1H), 8.30
(s, 1H), 8.11-8.00 (m, 2H), 7.69 (d, J= 7.5 Hz, 1H), 7.62-7.58 (m, 3H), 7.50 (t, J= 7.6 Hz, 1H), 6.30 (s, 1H), 6.22-6.20 (m, 1H), 5.14-5.10 (m, 1H), 5.00-4.88 (m, 1H), 4.51-4.41 (m, 2H), 4.32-4.28 (m, 1H), 4.25-4.20 (m, 1H), 4.05 (t, J= 8.7 Hz, 1H), 3.80 (t, J= 7.1 Hz, 2H), 3.72-3.67 (m, 1H), 3.10-3.03 (m, 1H), 2.94-2.85 (m, 1H), 2.67-2.65 (m, 1H), 2.46-2.42 (m, 3H), 2.34-2.21 (m, 2H), 2.14-2.08 (m, 1H), 2.04-1.96 (m, 4H), 1.89-1.79 (m, 4H), 1.75-1.70 (m, 2H), 1.60-1.51 (m, 8H), 1.45-1.40 (m, 2H), 1.28-1.23 (m, 3H), 1.18-1.14 (m, 1H), 0.50- 0.43 (m, 2H).
[00192] LCMS (ESI): m/z = 1039.3 [M+H]+.
[00193] STEP H: S,S/(((((2-(((3S, 6S, 10aS)-3-((6R)-6-(l-(8-(2-(2, 6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oct- 7-yn-l-yl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4- carbonyl)-5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate [00194] To a solution of 3-(4-(8-(4-((R)-4-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin- l(2H)-yl)oct-l-yn-l-yl)-l-oxoisoindolin-2-yl)piperidine-2, 6-dione (70 mg, 93 pmol, 1.0 eq.) in DMF (1 mL) were added 4-nitrophenyl 5-((bis(2- (butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (64 mg, 93 pmol, 1.0 eq.) and TEA (28 mg, 280 pmol, 3.0 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was purified by prep-HPLC to get S,SE(((((2-(((3S,6S,10aS)-3-((6R)-6-(l-(8-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oct-7-yn-l-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2, 1-diyl)) dibutanethioate (Compound 6, 36.6 mg, 28 pmol, 30%) as a white solid.
[00195] 1 H NMR (400 MHz, DMSO- 6) 5 10.97 (s, 1H), 8.93 (d, J= 7.1 Hz, 1H), 8.34
(s, 1H), 8.19 (d, J= 8.7 Hz, 1H), 8.14 (s, 1H), 7.69 (d, J= 7.6 Hz, 1H), 7.62-7.57 (m, 3H), 7.50 (t, J= 7.6 Hz, 1H), 6.30 (s, 1H), 6.21 (d, J= 6.9 Hz, 1H), 5.15-5.10 (m, 1H), 5.01-4.88 (m, 1H), 4.50-4.46 (m, 2H), 4.32-4.28 (m, 1H), 4.25-4.10 (m, 5H), 4.08-4.04 (m, 1H), 3.82- 3.67 (m, 3H), 3.13 (t, J= 6.2 Hz, 4H), 2.95-2.83 (m, 1H), 2.62-2.52 (m, 4H), 2.48-2.39 (m, 4H), 2.33-2.24 (m, 1H), 2.14-1.94 (m, 6H), 1.89-1.68 (m, 6H), 1.60-1.50 (m, 12H), 1.46-1.38 (m, 2H), 1.30-1.20 (m, 3H), 0.85 (t, J= 7.4 Hz, 6H), 0.50-0.42 (m, 2H).
[00196] LCMS (ESI): m/z = 1300.2 [M+H]+.
[00197] Preparation of S,S E((((difluoro(2-(((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4- hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l- oxobutan-2-yl)carbamoyl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5- oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)methyl)phosphoryl)bis(oxy))bis(ethane-2, 1-diyl)) dibutanethioate (Compound 7) and (difluoro(2-(((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)carbamoyl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (Compound 8)
Figure imgf000082_0001
Figure imgf000082_0002
Figure imgf000083_0001
[00198] STEP A: 4-benzyl 1 -(tert-butyl) piperidine- 1 ,4-dicarboxylate
[00199] To a solution of l-[(tert-butoxy)carbonyl]piperidine-4-carboxylic acid (5.0 g, 21.8 mmol, 1.0 eq.) in acetone (50 mL ) were added (bromomethyl)benzene (4.1 g, 23.9 mmol, 1.1 eq.) and K2CO3 (6.0 g, 43.6 mmol, 2.0 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford 4-benzyl 1-tert-butyl piperidine-l,4-dicarboxylate (2.5 g, 7.82 mmol, 36%) as a white solid. LCMS (ESI): m/z = 320 [M+H]+.
[00200] STEP B: benzyl piperidine-4-carboxylate
[00201] To a solution of 4-benzyl 1 -(tert-butyl) piperidine-l,4-dicarboxylate (2.5 g, 7.82 mmol, 1.0 eq.) in dioxane (10 mL) was added HCl/dioxane(5 mL, 2 M) and the resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure to get crude benzyl piperidine-4-carboxylate (1.7 g, quant.) as a white solid, which was used in next step directly without further purification. LCMS (ESI): m/z = P) [M+H]+.
[00202] STEP C: benzyl l-(3-(l-(tert-butoxycarbonyl)azetidin-3-yl)pyridin-4-yl)piperidine- 4-carboxylate
[00203] To a solution of benzyl piperidine-4-carboxylate (250 mg, 1.14 mmol, 1.0 eq.) in DMF (3 mL) were added tert-butyl 3-(4-fluoropyridin-3-yl)azetidine-l-carboxylate (288 mg, 1.14 mmol, 1.0 eq.) and DIEA (443 mg, 3.42 mmol, 3.0 eq). The resulting mixture was stirred at 120 °C for 16 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by Biotage® Cl 8 column chromatography to get benzyl l-(3-(l-(tert-butoxycarbonyl)azetidin-3-yl)pyridin-4-yl)piperidine-4-carboxylate (200 mg, 0.44 mmol, 39%) as a white solid. LCMS (ESI): m/z = 452 [M+H]+.
[00204] STEP D: l-(3-(l -(tert-butoxycarbonyl)azetidin-3-yl)pyridin-4-yl)piperidine-4- carboxylic acid
[00205] To a solution of benzyl l-(3-(l-(tert-butoxycarbonyl)azeti din-3 -yl)pyridin-4- yl)piperidine-4-carboxylate (200 mg, 0.44 mmol, 1.0 eq.) in MeOH (4 mL) was added Pd/C (20 mg) under nitrogen. The suspension was degassed under vacuum and purged with H2 several times. The resulting mixture was stirred at room temperature for 3 hrs. After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with MeOH (10 mL). The combined filtrates were concentrated to dryness to give 1 -(3 -(1 -(tertbutoxy carbonyl)azeti din-3 -yl)pyridin-4-yl)piperidine-4-carboxylic acid (130 mg, 0.36 mmol, 81%) as a white solid. LCMS (ESI): m/z = 362 [M+H]+.
[00206] STEP E: tert-butyl 3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)carbamoyl)piperidin-l- yl)pyridin-3-yl)azetidine-l -carboxylate
[00207] To a solution of l-(3-(l-(tert-butoxycarbonyl)azeti din-3 -yl)pyridin-4- yl)piperidine-4-carboxylic acid (130 mg, 0.36 mmol, 1.0 eq.) and HATU(178 mg, 0.47 mmol, 1.3 eq.) in DMF (2 mL) were added (2S,4R)-l-((S)-2-amino-3,3-dimethylbutanoyl)-4- hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamide (155 mg, 0.36 mmol, 1.0 eq.) and DIEA (93 mg, 0.72 mmol, 2 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was purified by Biotage® C18 column chromatography to get tert-butyl 3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy- 2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)carbamoyl)piperi din- l-yl)pyri din-3 -yl)azeti dine- l-carboxylate( 100 mg, 0.13 mmol, 36%) as a white solid. LCMS (ESI): m/z = 774 [M+H]+.
[00208] STEP F: l-(3-(azetidin-3-yl)pyridin-4-yl)-N-((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)piperidine-4-carboxamide
[00209] To a solution of tert-butyl 3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)carbam oyl)piperi din- l-yl)pyri din-3 -yl)azeti dine- 1 -carboxylate (100 mg, 0.13 mmol, 1.0 eq.) in DCM (3 mL) was added TFA (0.5 mL) and the reaction mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure to get crude l-(3-(azetidin-3-yl)pyridin-4-yl)-N-((S)-l-((2S,4R)-4-hydroxy- 2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)piperidine-4-carboxamide(87 mg, quant.) as a white solid, which was used in next step directly without further purification. LCMS (ESI): m/z = 674 [M+H]+.
[00210] STEP G: tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)carbamoyl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamate
[00211] To a solution of (3S,6S,9aS)-6-((tert-butoxycarbonyl)amino)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carboxylic acid (45 mg, 0.14 mmol, 1.1 eq.) and HATU (50 mg, 0.13 mmol, 1.3 eq.) in DMF(1 mL) were added l-(3-(azetidin-3-yl)pyridin-4-yl)-N-((S)-l-((2S,4R)- 4-hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l- oxobutan-2-yl)piperidine-4-carboxamide (87 mg, 0.13 mmol,l eq.) and DIEA (50 mg, 0.39 mmol, 3 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was purified by Biotage® Cl 8 column chromatography to get tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)carbamoyl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamate(100 mg, 103 pmol, 80%) as a white solid. LCMS (ESI): m/z = 968 [M+H]+. [00212] STEP H: l-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a ]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)-N-( (S)-1-((2S, 4R) -4-hydroxy-2-( ( 4-( 4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)piperidine-4-carboxamide
[00213] To a solution of tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2- ((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)carbamoyl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamate(100 mg, 103 pmol, 1.0 eq.) in DCM (2 mL) was added TFA (0.5 mL) and the reaction mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure to get crude l-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2-a]azepine-3- carbonyl)azetidin-3-yl)pyridin-4-yl)-N-((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)piperidine-4- carboxamide(89 mg, quant.) as a white solid, which was used in next step directly without further purification. LCMS (ESI): m/z = 868 [M+H]+.
[00214] STEP I: S,S^((((difluoro(2-(((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2- ((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)carbamoyl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)methyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate
[00215] To a solution of l-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)-N-((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)piperidine-4-carboxamide(40 mg, 46 pmol, 1.0 eq.) in DMF (1 mL) were added perfluorophenyl 5-((bis(2-
(butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (34 mg, 46 pmol, 1.0 eq.) and TEA (18 mg, 138 pmol, 3.0 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by prep-HPLC to get S,SE((((difluoro(2- (((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5- yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)carbamoyl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)methyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 7, 20 mg, 14 pmol, 30% ) as a white solid.
[00216] ’H NMR (400 MHz, DMSO- 6) 5 8.99 (s, 1H), 8.89-8.71 (m, 1H), 8.63-8.53 (m, 1H), 8.52-8.26 (m, 3H), 8.24-8.18 (m, 1H), 8.18-8.10 (m, 1H), 8.03-7.91 (m, 1H), 7.62-7.55 (m, 1H), 7.46-7.35 (m, 4H), 7.34-7.25 (m, 1H), 4.86-4.76 (m, 1H), 4.67-4.63 (m, 1H), 4.57- 4.52 (m, 1H), 4.48-4.40 (m, 3H), 4.37-4.28 (m, 3H), 4.25-4.13 (m, 6H), 4.03-3.93 (m, 3H), 3.69-3.58 (m, 4H), 3.13 (t, J= 6.0 Hz, 5H), 2.77-2.67 (m, 1H), 2.57-2.52 (m, 4H), 2.45 (s, 3H), 2.25-2.15 (m, 1H), 2.08-1.60 (m, 15H), 1.60-1.51 (m, 4H), 1.03-0.78 (m, 15H).
[00217] LCMS (ESI): m/z = 1418.4 [M+H]+.
[00218] STEP J: (difluoro(2-(((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)carbamoyl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamoyl)benzo[b ]thiophen-5-yl)methyl)phosphonic acid
[00219] To a solution of l-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)-N-((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)piperidine-4-carboxamide (40 mg, 46 pmol, 1.0 eq.) in DMF (1 mL) were added (difluoro(2- ((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (22 mg, 46 pmol, 1.0 eq.) and TEA (18 mg, 138 pmol, 3.0 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was purified by prep- HPLC to get (difluoro(2-(((3S,6S,9aS)-3-(3-(4-(4-(((S)-l-((2S,4R)-4-hydroxy-2-((4-(4- methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)carbamoyl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (Compound 8, 13 mg, 11 pmol, 24%) as a white solid.
[00220] ’H NMR (400 MHz, DMSO- 6) 5 8.99 (s, 1H), 8.82-8.67 (m, 1H), 8.62-8.53 (m, 1H), 8.52-8.24 (m, 3H), 8.17-8.05 (m, 2H), 8.02-7.94 (m, 1H), 7.64-7.55 (m, 1H), 7.48-7.37 (m, 4H), 7.32-7.25 (m, 1H), 4.87-4.75 (m, 1H), 4.68-4.64 (m, 1H), 4.57-4.51 (m, 1H), 4.45- 3.95 (m, 10H), 3.75-3.57 (m, 4H), 3.21-3.04 (m, 2H), 2.79-2.66 (m, 1H), 2.45 (s, 3H), 2.21- 1.64 (m, 16H), 1.01-0.85 (m, 9H).
[00221] LCMS (ESI): m/z = 580.2 [M/2+H]+. [00222] Preparation of ((2-(((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a] azepin-6-yl)carbamoyl)benzo [b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 9) and S,SB(((((2-(((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy)) bis(ethane-2,l-diyl)) dibutanethioate (Compound 10)
Figure imgf000088_0001
Figure imgf000089_0001
[00223] STEP A: tert-butyl 3-(4-(2-(benzyloxy)ethoxy)pyridin-3-yl)azetidine-l- carboxylate
[00224] To a solution of tert-butyl 3 -(4-fluoropyridin-3-yl)azetidine-l -carboxylate (500 mg, 1.98 mmol, 1.0 eq.) in THF (10 mL) was added t-BuOK (445 mg, 3.96 mmol, 2.0 eq.) at room temperature. The reaction mixture was stirred at 60 °C overnight. After completion, the reaction solvent was removed, the residue was purified by Biotage® Cl 8 column chromatography to give tert-butyl 3 -(4-(2-(benzyloxy)ethoxy)pyri din-3 -yl)azeti dine- 1- carboxylate (556 mg, 1.45 mmol, 73%) as a white solid. LCMS (ESI): m/z = 385 [M+H]+.
[00225] STEP B: tert-butyl 3-(4-(2-hydroxyethoxy)pyridin-3-yl)azetidine-l -carboxylate
[00226] To a solution of tert-butyl 3 -(4-(2-(benzyloxy)ethoxy)pyri din-3 -yl)azeti dine- 1- carboxylate (556 mg, 1.45 mmol, 1.0 eq.) in MeOH (10 mL) was added Pd/C (55 mg). The suspension was degassed under vacuum and purged with H2 several times. The reaction mixture was stirred at room temperature under H2 for 4 hrs. After completion, the reaction mixture was filtered through a pad of Celite®, and washed with MeOH. The filtrate was concentrated under reduced pressure. The residue was purified by Biotage® Cl 8 column chromatography to give tert-butyl 3 -(4-(2 -hydroxy ethoxy)pyri din-3 -yl)azeti dine- 1- carboxylate (350 mg, 1.19 mmol, 82%) as an oil. LCMS (ESI): m/z = 295 [M+H]+.
[00227] STEP C: tert-butyl 3-(4-(2-((methylsulfonyl)oxy)ethoxy)pyridin-3-yl)azetidine-l- carboxylate
[00228] To a solution of tert-butyl 3 -(4-(2 -hydroxy ethoxy)pyri din-3 -yl)azeti dine- 1- carboxylate (350 mg, 1.19 mmol, 1.0 eq.) in DCM (10 mL) were added TEA (301 mg, 2.98 mmol, 2.5 eq) and MsCl (205 mg, 1.79 mmol, 1.5 eq.) at room temperature. The reaction mixture was stirred at room temperature for 4 hrs. After completion, the reaction solvent was removed to give the crude tert-butyl 3-(4-(2-((methylsulfonyl)oxy)ethoxy)pyridin-3- yl)azetidine-l -carboxylate (442 mg, quant.) as an oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 373 [M+H]+.
[00229] STEP D: tert-butyl 3-(4-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carboxylate
[00230] To a solution of tert-butyl 3-(4-(2-((methylsulfonyl)oxy)ethoxy)pyridin-3- yl)azetidine-l -carboxylate (442 mg, 1.19 mmol, 1.0 eq.) in DMF (8 mL) was added 4-(2,6- bis(benzyloxy)pyridin-3-yl)phenol (502 mg, 1.31 mmol, 1.1 eq.) and CS2CO3 (1.16 g, 3.57 mmol, 3 eq). The reaction mixture was stirred at 95°C overnight. After completion, the reaction mixture was diluted with water, extracted with EtOAc (30 mL x 2). The organic layers were combined and washed with brine (20 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by Biotage® Cl 8 column chromatography to give tert-butyl 3-(4-(2-(4-(2,6-bis(benzyloxy)pyridin-3-yl)phenoxy)ethoxy)pyridin-3- yl)azetidine-l -carboxylate (380 mg, 0.58 mmol, 48%) as an oil . LCMS (ESI): m/z = 660 [M+H]+.
[00231] STEP E: tert-butyl 3-(4-(2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)ethoxy)pyridin-3- yl)azetidine-l -carboxylate
[00232] To a solution of tert-butyl 3-(4-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)ethoxy)pyri din-3 -yl)azeti dine- 1 -carboxylate (380 mg, 0.58 mmol, 1.0 eq.) in MeOH (5 mL) were added Pd/C (40 mg). The resulting mixture was stirred at room temperature under H2 for 2 days. After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with MeOH (20 mL). The combined filtrates were concentrated to dryness. The residue was purified directly by Biotage® Cl 8 column chromatography to give tert-butyl 3-(4-(2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l- carboxylate (130 mg, 0.27 mmol, 47%) as a white solid. LCMS (ESI): m/z = 482 [M+H]+. [00233] STEP F: 3-(4-(2-((3-(azetidin-3-yl)pyridin-4-yl)oxy)ethoxy)phenyl)piperidine-2, 6- dione
[00234] To a solution of tert-butyl 3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyri din-3 -yl)azeti dine- 1 -carboxylate (130 mg, 0.27 mmol, 1.0 eq.) in DCM (3 mL) was added TFA (1 mL). The reaction was stirred at room temperature for 2 hrs. After completion, the reaction solvent was removed to give the crude 3-(4-(2-((3-(azetidin-3- yl)pyridin-4-yl)oxy)ethoxy)phenyl)piperidine-2, 6-dione (103 mg, quant.) as an oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 382 [M+H]+.
[00235] STEP G: tert-butyl ((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a azepin- 6-yl) carbamate
[00236] To a solution of 3-(4-(2-((3-(azetidin-3-yl)pyridin-4-yl)oxy)ethoxy) phenyl)piperidine-2, 6-dione (103 mg, 0.27mmol, 1.0 eq.), (3S,6S,9aS)-6-((tert- butoxycarbonyl)amino)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepine-3 -carboxylic acid (84 mg, 0.27 mmol, 1.0 eq.) and DIEA ( 89 mg, 0.68 mmol, 2.5 eq.) in DCM (10 mL) was added HATU (106 mg, 0.32 mmol, 1.2 eq.). The reaction mixture was stirred at room temperature overnight. After completion, the reaction mixture was diluted with H2O (30 mL) and extracted with DCM (30 mL x 2). The organic layers were combined and washed with brine (20 mL), dried over anhydrous ISfeSCU, and concentrated under reduced pressure. The residue was purified by Cl 8 column chromatography to give tert-butyl ((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamate (105 mg, 0.16 mmol, 58%) as a white solid. LCMS (ESI): m/z = 676 [M+H]+.
[00237] STEP H: 3-(4-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)oxy)ethoxy)phenyl)piperidine-2, 6-dione [00238] To a solution of tert-butyl ((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamate (40 mg, 59 pmol, 1.0 eq.) in DCM (1.5 mL) was added TFA (0.5 mL). The reaction was stirred at room temperature for 2 hrs. After completion, the reaction solvent was removed to give the crude 3-(4-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)oxy)ethoxy)phenyl) piperidine- 2, 6-dione (34 mg, quant.) as an oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 576 [M+H]+ [00239] STEP I: 3-(4-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)oxy)ethoxy)phenyl)piperidine-2, 6-dione [00240] To a solution of 3-(4-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)oxy)ethoxy)phenyl)piperidine- 2, 6-dione (34 mg, 59 pmol, 1.0 eq.) in DMF (2 mL) were added NMM (0.2 mL) and (difluoro(2-((perfluorophenoxy)carbonyl)benzo[b]Thiophen-5-yl)methyl)phosphonic acid (28 mg, 59 pmol, 1.0 eq). The reaction mixture was stirred at room temperature for 2 hrs. After completion, the residue was purified by prep-HPLC to give ((2-(((3S,6S,9aS)-3-(3-(4-(2-(4- (2,6-dioxopiperidin-3-yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5- oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difhioromethyl)phosphonic acid (Compound 9, 10.3 mg, 11.9 pmol, 20%) as a white solid. [00241] ’H NMR (400 MHz, DMSO 5 10.79 (d, J= 4.3 Hz, 1H), 8.80-8.58 (m, 3H), 8.30- 8.18 (m, 1H), 8.14-7.99 (m, 2H), 7.67-7.50 (m, 2H), 7.13 (d, J= 8.4 Hz, 2H), 6.93 (d, J= 7.0 Hz, 2H), 4.71-4.63 (m, 3H), 4.49-4.34 (m, 4H), 4.24-3.87 (m, 5H), 3.81-3.74 (m, 1H), 2.75- 2.40 (m, 2H), 2.22-2.06 (m, 2H), 2.01-1.86 (m, 3H), 1.85-1.59 (m, 7H).
[00242] LCMS (ESI): m/z = 866 [M+H]+.
[00243] STEP J: S,SE(((((2-(((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2, 1 -diyl)) dibutanethioate
[00244] To a solution of 3-(4-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)oxy)ethoxy)phenyl)piperidine- 2, 6-dione (55 mg, 0.11 mmol, 1.0 eq.) in DMF (2 mL) were added NMM (0.2 mL) and 4- nitrophenyl 5-((bis(2-(butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2- carboxylate (75 mg, 0.11 mmol, 1.0 eq). The reaction mixture was stirred at 35 °C overnight. After completion, the residue was purified by prep-HPLC to give S,SE(((((2-(((3S,6S,9aS)-3- (3-(4-(2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5- oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 10, 11.9 mg, 10.6 pmol, 9.5%) as white solid.
[00245] ’H NMR (400 MHz, DMSO- 6) 5 10.78 (d, J = 4.2 Hz, 1H), 8.83 (d, J = 7.6 Hz, 1H), 8.41-8.27 (m, 3H), 8.23-8.12 (m, 2H), 7.62-7.53 (m, 1H), 7.17-7.06 (m, 3H), 6.95-6.89 (m, 2H), 4.70-4.30 (m, 8H), 4.21-3.92 (m, 8H), 3.81-3.72 (m, 1H), 3.17-3.07 (m, 4H), 2.70- 2.60 (m, 1H), 2.57-2.52 (m, 4H), 2.48-2.41 (m, 1H), 2.22-2.03 (m, 2H), 2.02-1.92 (m, 2H), 1.89-1.60 (m, 8H), 1.60-1.50 (m, 4H), 0.88-0.82 (m, 6H).
[00246] LCMS (ESI): m/z = 1126.3 [M+H]+.
[00247] Preparation of ((2-(((3S,6S,9aS)-3-(3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine- 1 -carbonyl)-5-oxooctahydro- 1H- pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 11) and S,SB(((((2-(((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy))bis (ethane-2,l-diyl)) dibutanethioate (Compound 12)
Figure imgf000093_0001
Figure imgf000094_0001
[00248] STEP A: 4-(2, 6-bis(benzyloxy)pyridin-3-yl)phenol
[00249] To a solution of 2,6-bis(benzyloxy)-3-bromopyridine (1.22 g, 3.3 mmol, 1.0 eq.) in dioxane (12 mL) were added (4-hydroxyphenyl)boronic acid (500 mg, 3.63 mmol, 1.1 eq.) and a solution of K3PO4 (1.75 g, 8.24 mmol, 2.5 eq.) in H2O (4 mL) followed by Pd(dppf)C12 (239 mg, 0.33 mmol, 0.1 eq. ) at room temperature. The suspension was degassed under vacuum and purged with N2 several times. The reaction mixture was stirred at 100 °C overnight. After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with EtOAc (20 mL). The combined filtrates were concentrated to dryness, the residue was purified by Biotage® C18 column chromatography to give 4-(2,6-bis(benzyloxy)pyridin-3- yl)phenol (1.1 g, 2.87 mmol, 87%) as a white solid. LCMS (ESI): m/z = 384 [M+H]+.
[00250] STEP B: tert-butyl 3-(4-(2-(2-hydroxyethoxy)ethoxy)pyridin-3-yl)azetidine-l- carboxylate
[00251] To a solution of tert-butyl 3-(4-fluoropyridin-3-yl)azetidine-l -carboxylate (500 mg, 1.98 mmol, 1.0 eq.) in THF (15 mL) was added 2,2Ebxybis(ethan-l-ol) (2.1 g, 19.8 mmol, 10 eq.) and t-BuOK (1.11 g, 9.91 mmol, 5.0 eq.) at room temperature. The reaction mixture was stirred at 60 °C overnight. After completion, the reaction solvent was removed, the residue was purified by Biotage® Cl 8 column chromatography to give tert-butyl 3-(4-(2-(2- hy droxyethoxy)ethoxy)pyri din-3 -yl)azeti dine- 1 -carboxylate (500 mg, 1.48 mmol, 75%) as a white solid. LCMS (ESI): m/z = 339 [M+H]+.
[00252] STEP C: tert-butyl 3-(4-(2-(2-((methylsulfonyl)oxy)ethoxy)ethoxy)pyridin-3- yl)azetidine-l -carboxylate
[00253] To a solution of tert-butyl 3 -(4-(2-(2 -hydroxy ethoxy)ethoxy)pyri din-3 - yl)azetidine-l -carboxylate (500 mg, 1.48 mmol, 1.0 eq.) in DCM (10 mL) were added TEA (374 mg, 3.7 mmol, 2.5 eq.) and MsCl (254 mg, 2.22 mmol, 1.5 eq.) at room temperature. The reaction mixture was stirred at room temperature for 4 hrs. After completion, the reaction solvent was removed to give crude tert-butyl 3-(4-(2-(2- ((methylsulfonyl)oxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carboxylate (616 mg, quant.) as an oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 417 [M+H]+.
[00254] STEP D: tert-butyl 3-(4-(2-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carboxylate
[00255] To a solution of tert-butyl 3-(4-(2-(2-((methylsulfonyl)oxy)ethoxy)ethoxy)pyridin- 3 -yl)azetidine-l -carboxylate (616 mg, 1.48 mmol, 1.0 eq.) in DMF (8 mL) were added 4-(2,6- bis(benzyloxy)pyridin-3-yl)phenol (624 mg, 1.63 mmol, 1.1 eq.) and CS2CO3 (1.45 g, 4.44 mmol, 3 eq). The reaction mixture was stirred at 95 °C overnight. After completion, the reaction mixture was diluted with water (20 mL), extracted with EtOAc (30 mL x 2). The organic layers were combined and washed with brine (20 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by Biotage® Cl 8 column chromatography to give tert-butyl 3-(4-(2-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)ethoxy)ethoxy) pyri din-3 -yl)azeti dine- 1 -carboxylate (703 mg, 1.0 mmol, 67%) as an oil. LCMS (ESI): m/z = 704 [M+H]+. [00256] STEP E: tert-butyl 3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carboxylate
[00257] To a solution of tert-butyl 3-(4-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)ethoxy)pyri din-3 -yl)azeti dine- 1 -carboxylate (703 mg, 1.0 mmol, 1.0 eq.) in MeOH (10 mL) was added Pd/C (100 mg). The suspension was degassed under vacuum and purged with H2 several times. The resulting mixture was stirred at room temperature under H2 for 2 days. After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with MeOH (20 mL). The combined filtrates were concentrated to dryness. The residue was purified by Biotage® Cl 8 column chromatography to give tert-butyl 3-(4-(2- (2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l -carboxylate (350 mg, 0.67 mmol, 67%) as a white solid. LCMS (ESI): m/z = 526 [M+H]+.
[00258] STEP F: 3-(4-(2-(2-((3-(azetidin-3-yl)pyridm-4- yl)oxy)ethoxy)ethoxy)phenyl)piperidine-2, 6-dione
[00259] To a solution of tert-butyl 3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy)pyri din-3 -yl)azeti dine- 1 -carboxylate (350 mg, 0.67 mmol, 1.0 eq.) in DCM (3 mL) was added TFA (1 mL). The reaction was stirred at room temperature for 2 hrs. After completion, the reaction solvent was removed to give crude 3-(4-(2-(2-((3-(azetidin- 3-yl)pyridin-4-yl)oxy)ethoxy)ethoxy)phenyl)piperidine-2, 6-dione (283 mg, quant.) as an oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 426 [M+H]+.
[00260] STEP G: tert-butyl ((3S,6S,9aS)-3-(3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamate
[00261] To a solution of 3-(4-(2-(2-((3-(azetidin-3-yl)pyridin-4- yl)oxy)ethoxy)ethoxy)phenyl)piperidine-2, 6-dione (283 mg, 0.67 mmol, 1.0 eq.), (3S,6S,9aS)- 6-((tert-butoxycarbonyl)amino)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepine-3-carboxylic acid (209 mg, 0.67 mmol, 1.0 eq.) and DIEA ( 216 mg, 1.68 mmol, 2.5 eq.) in DCM (10 mL) was added HATU (262 mg, 0.80 mmol, 1.2 eq.). The reaction mixture was stirred at room temperature overnight. After completion, the reaction mixture was diluted with H2O (30 mL) and extracted with DCM (30 mL x 2). The organic layers were combined and washed with brine (20 mL), dried over anhydrous ISfeSCU, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to give tert-butyl ((3S,6S,9aS)-3-(3-(4-(2-(2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)ethoxy)ethoxy)pyridin-3- yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamate (320 mg, 0.44 mmol, 66%) as a white solid. LCMS (ESI): m/z = 720 [M+H]+.
[00262] STEP H: 3-(4-(2-(2-((3-( l-((3S,6S,9aS)-6-amino-5-oxooctahydro- lH-pyrrolo[ 1 ,2- a ]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl) oxyjelhoxyjelhoxy) phenyl) pi peridi ne-2, 6- dione
[00263] To a solution of tert-butyl ((3S,6S,9aS)-3-(3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy) pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamate (70 mg, 97 pmol, 1.0 eq.) in DCM (1.5 mL) was added TFA (0.5 mL). The reaction was stirred at room temperature for 2 hrs. After completion, the reaction solvent was removed to give crude 3-(4-(2-(2-((3-(l-((3S,6S,9aS)-6-amino-5- oxooctahydro-lH-pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4- yl)oxy)ethoxy)ethoxy)phenyl)piperidine-2, 6-dione (60 mg, quant.) as an oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 620 [M+H]+
[00264] STEP I: ((2-(((3S,6S,9aS)-3-(3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid [00265] To a solution of 3-(4-(2-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[ 1 ,2-a]azepine-3 -carbonyl)azeti din-3 -yl)pyridin-4- yl)oxy)ethoxy)ethoxy)phenyl)piperidine-2, 6-dione (60 mg, 97 pmol, 1.0 eq.) in DMF (2 mL) were added NMM (0.30 mL) and (difluoro(2 -((perfluorophenoxy) carbonyl)benzo[b]Thiophen-5-yl)methyl)phosphonic acid (46 mg, 97 pmol, 1.0 eq). The reaction mixture was stirred at room temperature for 2 hrs. After completion, the residue was purified by prep-HPLC to give ((2-(((3S,6S,9aS)-3-(3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 11, 14.3 mg, 16.5 pmol, 17%) as a white solid.
[00266] ’H NMR (400 MHz, DMSO- 6) 5 10.80 (d, J = 3.9 Hz, 1H), 8.81-8.65 (m, 1H), 8.40-7.86 (m, 5H), 7.63-7.44 (m, 1H), 7.21 (d, J= 6.1 Hz, 0.5H), 7.10 (t, J= 9.3 Hz, 2H), 7.00 (d, J= 5.8 Hz, 0.5H), 6.86 (t, J= 9.2 Hz, 2H), 4.76-4.58 (m, 2H), 4.56-4.45 (m, 1H), 4.39-4.07 (m, 7H), 3.94-3.75 (m, 7H), 2.71-2.57 (m, 1H), 2.47-2.41 (m, 1H), 2.20-2.04 (m, 2H), 2.02- 1.91 (m, 2H), 1.88-1.56 (m, 8H).
[00267] LCMS (ESI): m/z = 910.4 [M+H]+. [00268] STEP J: S,SE(((((2-(((3S,6S,9aS)-3-(3-(4-(2-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2, 1 -diyl)) dibutanethioate
[00269] To a solution of 3-(4-(2-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[ 1 ,2-a]azepine-3 -carbonyl)azeti din-3 -yl)pyridin-4- yl)oxy)ethoxy)ethoxy)phenyl)piperidine-2, 6-dione (73 mg, 0.12 mmol, 1.0 eq.) in DMF (2 mL) were added NMM (0.2 mL) and 4-nitrophenyl 5-((bis(2- (butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (83 mg, 0.12 mmol, 1.0 eq). The reaction mixture was stirred at 35 °C overnight. After completion, the residue was purified by prep-HPLC to give S,SE(((((2-(((3S,6S,9aS)-3-(3-(4-(2-(4-(2,6- dioxopiperidin-3-yl)phenoxy)ethoxy)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 12, 15.6 mg, 13.3 pmol, 11%) as a white solid.
[00270] ’H NMR (400 MHz, DMSO- 6) 5 10.78 (d, J = 3.2 Hz, 1H), 8.90-8.75 (m, 1H), 8.44-8.26 (m, 3H), 8.23-8.13 (m, 2H), 7.64-7.53 (m, 1H), 7.19-7.53 (m, 3H), 6.88-6.76 (m, 2H), 4.72-4.60 (m, 1H), 4.56-3.88 (m, 15H), 3.86-3.72 (m, 5H), 3.15-3.07 (m, 4H), 2.63-2.53 (m, 4H), 2.20-2.05 (m, 2H), 2.05-1.86 (m, 4H), 1.85-1.63 (m, 7H), 1.62-1.72 (m, 5H), 0.90- 0.77 (m, 6H).
[00271] LCMS (ESI): m/z = 1170 [M+H]+.
[00272] Preparation of ((2-(((3S.6S 0aS)-3-((rel-3S.4R)-3-cyano-4-(3-((7-(2-(2.6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphonic acid (Compound 13) and S,SB(((((2-(((3S,6S,10aS)-3-((rel- 3S,4R)-3-cyano-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l- yl)oxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane- 2,1-diyl)) dibutanethioate (Compound 14)
Figure imgf000099_0001
Figure imgf000100_0001
[00273] STEP A: hept-6-yn-l-yl me thane sulfonate
[00274] To a solution of hept-6-yn-l-ol (5,0 g, 44,6 mmol, 1.0 eq.) in DCM (60 mL ) were added MsCl (10,0 g, 89,2 mmol, 2.0 eq.) and TEA (9,0 g, 89,2 mmol, 2.0 eq.). The resulting mixture was stirred at room temperature for 15 min under N2. After completion, the reaction mixture was diluted with water (40 mL) and extracted with EtOAc (120 mL *3). The combined organic layer was washed with brine (100 mL x 2), dried over anhydrous Na2SO4 and concentrated under reduced pressure to afford hept-6-yn-l-yl methanesulfonate (8 g, 42, 1 mmol, 94%) as a colorless oil. ’H NMR (400 MHz, DMSO- 6) 5 4.19 (t, J= 6.4 Hz, 2H), 3.15 (s, 3H), 2.74 (t, J= 2.5 Hz, 1H), 2.17 (td, J= 6.7, 2.6 Hz, 2H), 1.73-1.62 (m, 2H), 1.51- 1.40 (m, 4H).
[00275] STEP B: rac-tert-butyl (3S,4R)-3-cyano-4-(3-(hept-6-yn-l- yloxy)phenyl)pyrrolidine-l -carboxylate [00276] To a solution of hept-6-yn-l-yl methanesulfonate (800 mg, 4.2 mmol, 1.0 eq.) and rac-tert-butyl (3 S,4R)-3-cyano-4-(3-hydroxyphenyl)pyrrolidine-l -carboxylate (1.21 g, 4.2 mmol, 1.0 eq.) in DMF (10 mL ) was added K2CO3 (1.15 g, 8,4 mmol, 2.0 eq.). The mixture was stirred at 60 °C for 12 hrs. After completion, the mixture was filtered and the filtrate was purified by Biotage Cl 8 column chromatography to afford rac-tert-butyl (3S,4R)-3-cyano-4- (3 -(hept-6-yn-l-yloxy)phenyl)pyrrolidine-l -carboxylate (850 mg, 2.2 mmol, 50%) as a colorless oil. LCMS (ESI): m/z = 383 [M+H]+.
[00277] STEP C: rac-tert-butyl (3S,4R)-3-cyano-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carboxylate
[00278] To a solution of rac-tert-butyl (3S,4R)-3-cyano-4-(3-(hept-6-yn-l- yloxy)phenyl)pyrrolidine-l -carboxylate (630 mg, 1.6 mmol, 1.0 eq.) and 3-(4-bromo-l- oxoisoindolin-2-yl)piperidine-2, 6-dione (520 mg, 1.6 mmol, 1.0 eq.) in DMF (10 mL) were added Cs2CO3 (1.6 g, 4.8 mmol, 3.0 eq.), Cui (63 mg, 0.32 mmol, 0.2 eq.) and Pd(dppf)C12 (241 mg, 0.2 mmol, 0.2 eq.). The mixture was purged and degassed with N2 3 times and then stirred at 60 °C for 12 hrs. After completion, the mixture was filtered and the filtrate was purified by Biotage Cl 8 column chromatography to afford rac-tert-butyl (3S,4R)-3-cyano-4- (3-((7-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l- yl)oxy)phenyl)pyrrolidine-l -carboxylate (340 mg, 0.54 mmol, 31%) as a gray solid. LCMS (ESI): m/z = 625 [M+H]+.
[00279] STEP D: rac-(3S,4R)-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-3-carbonitrile
[00280] To a solution of rac-tert-butyl (3S,4R)-3-cyano-4-(3-((7-(2-(2,6-dioxopiperidin-3- yl)-l-oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carboxylate (170 mg, 0,27 mmol, 1.0 eq.) in DCM (1.8 mL) was added TFA (0.6 mL). The resulting mixture was stirred at room temperature for 2 hrs. After completion, the mixture was concentrated under reduced pressure to give rac-(3S,4R)-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept- 6-yn-l-yl)oxy)phenyl)pyrrolidine-3 -carbonitrile (138 mg, quant.) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 525 [M+H]+.
[00281] STEP E: tert-butyl ((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-((7-(2-(2,6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carbonyl)- 5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
[00282] To a solution of rac-(3S,4R)-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-3-carbonitrile (138 mg, 0,26 mmol, 1.0 eq.) and (3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (86 mg, 0.26 mmol, 1.0 eq.) in DMF (2 mL) were added HATU (120 mg, 0.31 mmol, 1.2 eq.) and DIEA (102 mg, 0.78 mmol, 3 eq.). The resulting mixture was stirred at room temperature for 1 hr. After completion, the reaction mixture was purified by Biotage® Cl 8 column chromatography to get tert-butyl ((3 S,6S, 1 OaS)-3 -((rel-3 S,4R)-3 -cyano-4-(3 -((7-(2-(2,6-dioxopiperi din-3 -yl)- 1 -oxoi soindolin-
4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2- a]azocin-6-yl)carbamate (120 mg, 0.14 mmol, 55%) as a white soild. LCMS (ESI): m/z = 833 [M+H]+.
[00283] STEP F: (rel-3S, 4R)-l-( ( 3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a ]azocine-3-carbonyl)-4-( 3-(( 7-(2-( 2, 6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn- l-yl)oxy)phenyl)pyrrolidine-3-carbonitrile
[00284] To a solution of (rel-3S,4R)-l-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-3-carbonitrile (120 mg, 0.14 mmol, 1.0 eq.) in DCM (1.8 mL) was added TFA (0.6 mL) and the reaction mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure to get (rel-3S,4R)-l-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-3-carbonitrile (101 mg, 0.14 mmol, 96%) as a yellow oil, which was used in next step directly without further purification.
LCMS (ESI): m/z = 733 [M+H]+.
[00285] STEP G: ((2-(((3S, 6S, 10aS)-3-((rel-3S, 4R)-3-cyano-4-(3-((7-(2-(2, 6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carbonyl)-
5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphonic acid
[00286] To a solution of (rel-3S,4R)-l-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-3-carbonitrile (30 mg, 41 pmol, 1.0 eq.) and (difluoro(2-((perfluorophenoxy)carbonyl)benzo[b]thiophen-5- yl)methyl)phosphonic acid (19 mg, 41 pmol, 1.0 eq.) in DMF(1 mL) was added DIEA (16 mg, 0.12 mmol, 3 eq.). The resulting mixture was stirred at room temperature for 15 min. After completion, the reaction mixture was purified by prep-HPLC to give ((2- (((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-
4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2- a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 14, 12 mg, 12 pmol, 29%) as a white solid.
[00287] 1H NMR (400 MHz, DMSO- 6) 5 11.05-10.92 (m, 1H), 8.91-8.77 (m, 1H), 8.37- 8.27 (m, 1H), 8.17-8.03 (m, 2H), 7.74-7.44 (m, 4H), 7.31-7.23 (m, 1H), 7.06-6.92 (m, 2H), 6.91-6.84 (m, 1H), 5.18-5.08 (m, 1H), 4.99-4.91 (m, 1H), 4.63-4.11 (m, 6H), 4.08-3.86 (m, 4H), 3.82-3.73 (m, 1H), 3.67-3.60 (m, 1H), 3.36-3.18 (m, 1H), 2.95-2.84 (m, 1H), 2.48-1.15 (m, 22H).
[00288] LCMS (ESI): m/z = 1023.4 [M+H]+.
[00289] STEP H: S,S^((((2-(((3S, 6S, 10aS)-3-((rel-3S, 4R)-3-cyano-4-(3-((7-(2-(2, 6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-l-carbonyl)-
5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate
[00290] To a solution of (rel-3S,4R)-l-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-(3-((7-(2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine-3-carbonitrile (30 mg, 41 pmol, 1.0 eq.) and 4-nitrophenyl 5-((bis(2- (butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (28 mg, 41 pmol, 1.0 eq.) in DMF(1 mL) was added DIEA (16 mg, 0.12 mmol, 3 eq.). The resulting mixture was stirred at room temperature for 15 min. After completion, the reaction mixture was purified by prep-HPLC to give S,SE(((((2-(((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3- ((7-(2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)hept-6-yn-l-yl)oxy)phenyl)pyrrolidine- l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thi ophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2, 1-diyl)) dibutanethioate (Compound 14, 15 mg, 12 pmol, 29%) as a white solid.
[00291] ’H NMR (400 MHz, DMSO- 6) 5 10.99 (s, 1H), 9.00-8.79 (m, 1H), 8.39-8.30 (m, 1H), 8.24-8.09 (m, 2H), 7.74-7.45 (m, 4H), 7.30-7.22 (m, 1H), 7.05-6.81 (m, 3H), 5.20- 5.06 (m, 1H), 5.03-4.87 (m, 1H), 4.65-4.38 (m, 2H), 4.36-3.45 (m, 13H), 3.33-3.30 (m, 6H), 3.21-3.05 (m, 4H), 2.97-2.80 (m, 1H), 2.43-1.39 (m, 24H), 1.34-1.14 (m, 2H), 0.94-0.79 (m, 6H).
[00292] LCMS (ESI): m/z = 1283.4 [M+H]+. [00293] Preparation of S,S E(((((2-(((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-(2-(2-((2-
(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 15) and ((2-(((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-(2-(2-((2-(2,6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphonic acid (Compound 16)
Figure imgf000104_0001
Figure imgf000105_0001
Figure imgf000106_0001
[00294] STEP A : 2-(2-((tert-butyldimethylsilyl)oxy)ethoxy)ethyl methane sulfonate
[00295] To a solution of 2-(2-((tert-butyldimethylsilyl)oxy)ethoxy)ethan-l-ol (500 mg, 2.26 mmol, 1.0 eq.) and TEA (342 mg, 3.38 mmol, 1.5 eq.) in DCM (10 mL ) was added MsCl (387 mg, 3.38 mmol, 1.5 eq.) dropwise. The reaction mixture was stirred at 0 °C for 1 hr. After completion, the reaction mixture was diluted with H2O (30 mL) and extracted with DCM (30 mL x 2). The combined organic layers were washed with brine (10 mL), dried over anhydrous Na2SO4, then concentrated under reduced pressure to give 2-(2-((tert- butyldimethylsilyl)oxy)ethoxy)ethyl methanesulfonate (500 mg, 1.67 pmol, 74%) as a yellow liquid, which was used in next step directly without further purification. LCMS (ESI): m/z = 299 [M+H]+.
[00296] STEP B: rac-tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2- hydroxyethoxy)ethoxy)phenyl)pyrrolidine-l-carboxylate
[00297] To a solution of 2-(2-((tert-butyldimethylsilyl)oxy)ethoxy)ethyl methanesulfonate (500 mg, 1.67 mmol, 1.0 eq.) and tert-butyl (3S,4R)-3-cyano-4-(3-hydroxyphenyl)pyrrolidine- 1 -carboxylate (3.5 g, 1.67 mmol, 1.0 eq.) in DMF (10 mL ) was added K2CO3 (692 mg, 5.01 mmol, 3.0 eq.). The reaction mixture was stirred at 60 °C for 16 hrs. After completion, the reaction mixture was diluted with H2O (30 mL) and extracted with EtOAc (30 mL x 2). The combined organic layers were washed with brine (10 mL), dried over anhydrous Na2SO4, The residue was purified by flash column chromatography on silica gel to afford rac-tert-butyl (3 S,4R)-3-cyano-4-(3-(2-(2-hydroxyethoxy)ethoxy)phenyl)pyrrolidine-l -carboxylate (260 mg, 690 umol, 41%) as a yellow oil. LCMS (ESI): m/z = 399 [M+Na]+.
[00298] STEP C: rac-tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2-
((methylsulfonyl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carboxylate
[00299] To a solution of tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2- hydroxyethoxy)ethoxy)phenyl)pyrrolidine-l -carboxylate (260 mg, 690 pmol, 1.0 eq.) and TEA (104 mg, 1.03 mmol, 1.5 eq.) in DCM (5 mL ) was added MsCl (117 mg, 1.03 mmol, 1.5 eq.) dropwise. The reaction mixture was stirred at 0 °C for 1 hr. After completion, the reaction mixture was diluted with H2O (10 mL) and extracted with DCM (10 mL x 2). The combined organic layers were washed with brine (10 mL), dried over anhydrous Na2SO4, then concentrated under reduced pressure to give crude rac-tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2- ((methylsulfonyl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carboxylate (300 mg, quant.) as a yellow liquid, which was used in next step directly without further purification. LCMS (ESI): m/z = 399 [M+H-56]+.
[00300] STEP D: rac-tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)- l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carboxylate
[00301] To a solution of rac-tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2- ((methylsulfonyl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carboxylate (300 mg, 660 pmol, 1.0 eq.) and 3-(4-hydroxy-l-oxoisoindolin-2-yl)piperidine-2, 6-dione (6.17 g, 660 pmol, 1.0 eq.) in DMF (10 mL ) was added K2CO3 (273 mg, 1.98 mmol, 3.0 eq.). The reaction mixture was stirred at 60 °C for 16 hrs. After completion, the reaction mixture was diluted with H2O (30 mL) and extracted with EtOAc (30 mL x 2). The combined organic layers were washed with brine (10 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure. The residue was purified by Biotage® Cl 8 column chromatography to get rac-tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l -carboxylate (180 mg, 0,29 mmol, 44%) as a white solid. LCMS (ESI): m/z =619 [M+H]+. [00302] STEP E: rac- (3S,4R)-4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-3-carbonitrile
[00303] To a solution of rac-tert-butyl (3S,4R)-3-cyano-4-(3-(2-(2-((2-(2,6-dioxopiperidin- 3 -yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l -carboxylate (180 mg, 0,29 mmol, L0 eq.) in DCM (2 mL) was added TFA (0.6 mL) and the resulting mixture was stirred at room temperature for 2 hrs . After completion, the reaction mixture was concentrated under reduced pressure to get crude rac- (3S,4R)-4-(3-(2-(2-((2-(2,6- di oxopiperi din-3 -yl)-l-oxoi soindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-3- carbonitrile (150 mg, quant.) as a colorless oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 519 [M+H]+.
[00304] STEP F: tert-butyl ((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-(2-(2-((2-(2,6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carbonyl)-
5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
[00305] To a mixture of (3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (85 mg, 0.26 mmol, 0.9 eq.) and HATU (131 mg, 0.35 mmol, 1.2 eq.) in DMF (5 mL) were added DIEA (112 mg, 0.86 mmol, 3.0 eq.) and rac- (3S,4R)-4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-3-carbonitrile (150 mg, 0.29 mmol, 1.0 eq.). The resulting mixture was stirred at 25 °C for 2 hrs. After completion, the reaction mixture was purified directly by Biotage® Cl 8 column chromatography to afford tert -butyl ((3S,6S,10aS)- 3-((rel-3S,4R)-3-cyano-4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-
6-yl)carbamate (120 mg, 0.15 mmol, 50%) as a white solid. LCMS (ESI): m/z = 827 [M+H]+.
[00306] STEP G: (rel-3S,4R)-l-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2- a ]azocine-3-carbonyl)-4-( 3-(2-( 2-((2-(2, 6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-3-carbonitrile
[00307] To a solution of tert-butyl ((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-(2-(2-((2- (2, 6-di oxopiperi din-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (120 mg, 0, 15 mmol, 1.0 eq.) in DCM (2 mL) was added TFA (0.6 mL) and the resulting mixture was stirred at room temperature for 2 hrs. After completion, the reaction mixture was concentrated under reduced pressure to get crude (rel-3S,4R)-l-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2- a]azocine-3-carbonyl)-4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-3-carbonitrile (105 mg, quant.) as a colorless oil, which was used in next step directly without further purification. LCMS (ESI): m/z =727 [M+H]+.
Figure imgf000109_0001
dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l -carbonyl)-
5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate
[00309] To a solution of (rel-3S,4R)-l-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2- a]azocine-3-carbonyl)-4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-3-carbonitrile (50 mg, 69 pmol, 1.0 eq.) and 4- nitrophenyl 5-((bis(2-(butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2- carboxylate (43 mg, 62 pmol, 0.9 eq.) in DMF (2 mL) was added DIEA (27 mg, 206 pmol, 3 eq.). The reaction mixture was stirred at room temperature for 2 hrs. After completion, the residue was purified by prep-HPLC to give S,SE(((((2-(((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-
4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-
6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l- diyl)) dibutanethioate (Compound 15, 10.9 mg, 9 pmol, 12%) as a white solid.
[00310] ’H NMR (400 MHz, DMSO-r/6) 5 10.97 (s, 1H), 8.95-8.85 (m, 1H), 8.37-8.32 (m, 1H), 8.23-8.12 (m, 2H), 7.61-7.55 (m, 1H), 7.49-7.41 (m, 1H), 7.34-7.20 (m, 3H), 7.06-6.85 (m, 3H), 5.15-5.03 (m, 1H), 5.01-4.88 (m, 1H), 4.62-4.44 (m, 1H), 4.30-4.12 (m, 10H), 4.02- 3.92 (m, 1H), 3.87-3.74 (m, 5H), 3.33-3.20 (m, 1H), 3.16-3.10 (m, 4H), 2.97-2.84 (m, 1H), 2.57-2.54 (m, 3H), 2.38-1.45 (m, 21H), 1.30-1.17 (m, 3H), 0.88-0.84 (m, 6H).
[00311] LCMS (ESI): m/z = 1277.4 [M+H]+.
[00312] STEP I: ((2-(((3S,6S,10aS)-3-((rel-3S,4R)-^-cyano-4-(3-(2-(2-((2-(2,6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-l-carbonyl)-
5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difhioromethyl)phosphonic acid
[00313] To a solution of (rel-3S,4R)-l-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2- a]azocine-3-carbonyl)-4-(3-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine-3-carbonitrile (50 mg, 69 pmol, 1.0 eq.) and (difluoro(2-((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (29 mg, 62 pmol, 0.9 eq.) in DMF (2 mL) was added DIEA (27 mg, 206 pmol, 3 eq.). The reaction mixture was stirred at room temperature for 2 hrs. After completion, the residue was purified by prep-HPLC to give ((2-(((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-(2-(2-((2-(2,6- dioxopiperi din-3 -yl)-l-oxoi soindolin-4-yl)oxy)ethoxy)ethoxy)phenyl)pyrrolidine- 1- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difhioromethyl)phosphonic acid (Compound 16, 10.5 mg, 10 pmol, 15%) as a white solid. [00314] ’H NMR (400 MHz, DMSO- 6) 5 10.97 (s, 1H), 8.89-8.78 (m, 1H), 8.35-8.27 (m, 1H), 8.18-8.10 (m, 1H), 8.09-8.03 (m, 1H), 7.62-7.55 (m, 1H), 7.50-7.20 (m, 4H), 7.05- 6.95 (m, 2H), 6.91-6.84 (m, 1H), 5.21-5.06 (m, 1H), 5.00-4.89 (m, 1H), 4.61-4.48 (m, 1H), 4.39-4.25 (m, 4H), 4.16-4.09 (m, 2H), 3.86-3.72 (m, 6H), 3.53-3.46 (m, 2H), 3.33-3.22 (m, 1H), 2.94-2.85 (m, 1H), 2.78-2.56 (m, 1H), 2.43-2.17 (m, 3H), 2.01-1.71 (m, 9H), 1.66-1.48 (m, 3H), 1.28-1.09 (m, 1H).
[00315] LCMS (ESI): m/z = 1017.3 [M+H]+.
[00316] Preparation of ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3- yl)phenoxy)pentyl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)- 5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphonic acid (Compound 17) and S,SB(((((2-(((3S,6S,10aS)-3- ((6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)-2-oxo-l,2-dihydropyridin-4- yl)-4-azaspiro [2.4] heptane-4-carbonyl)-5-oxodecahydropyrrolo [1,2-a] azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane- 2,1-diyl)) dibutanethioate (Compound 18) and ((2-(((3S,6S,10aS)-3-((6R)-6-(2-((5-(4-(2,6- dioxopiperidin-3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphonic acid (Compound 19)
Figure imgf000111_0001
Figure imgf000112_0001
ʼnll
Figure imgf000113_0001
[00317] STEP A: 5-(benzyloxy)pentyl methane sulfonate
[00318] To a solution of 5-(benzyloxy)pentan-l-ol (4 g, 20.6 mmol, 1 eq.) and TEA (4.2 g, 41.22 mmol, 2 eq.) in DCM (60 mL) was added MsCl (2.6 g, 22.8 mmol, 1.1 eq.) dropwise at 0 °C. The reaction mixture was warmed up to room temperature and stirred for 0.5 hrs under N2 atmosphere. After completion, the reaction mixture was diluted with water (100 mL) and extracted with DCM (100 mL *3). The combined organic layer was washed with brine (100 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure to give 5- (benzyloxy)pentyl methanesulfonate (5.5 g, quant.) as a colorless oil. LCMS (ESI) m/z = 273 [M+H]+.
[00319] STEP B: 2, 6-bis(benzyloxy)-3-(4-((5-(benzyloxy)pentyl)oxy)phenyl)pyridine [00320] To a solution of 5-(benzyloxy)pentyl methanesulfonate (3 g, 11.0 mmol, 1 eq.) and 4-(2,6-bis(benzyloxy)pyridin-3-yl)phenol (4.22 g, 11.03 mmol, 1.0 eq.) in DMF (100 mL) were added DMAP (134 mg, 1.10 mmol, 0.1 eq. ) and K2CO3 (3.04 g, 22.1 mmol, 2 eq.). The reaction mixture was stirred at 60 °C for 48 hrs under N2 atmosphere. After completion, the reaction mixture was diluted with water (100 mL) and extracted with EtOAc (100 mL x3). The combined organic layer was washed with brine (100 mL), dried over anhydrous Na2SC>4 and concentrated under reduced pressure. The residue was purified by column chromatography on silica gel to give 2,6-bis(benzyloxy)-3-(4-((5- (benzyloxy)pentyl)oxy)phenyl)pyridine (3.95 g, 7.06 mmol, 64%) as a colorless oil. LCMS (ESI) m/z = 560 [M+H]+.
[00321] STEP C: 3-(4-((5-hydroxypentyl)oxy)phenyl)piperidine-2, 6-dione
[00322] To a solution of 2,6-bis(benzyloxy)-3-(4-((5- (benzyloxy)pentyl)oxy)phenyl)pyridine (3.95 g, 7.06 mmol, 1 eq.) in MeOH (150 mL) were added Pd/C (400 mg) and Pd(OH)2 (400 mg) at 25 °C under N2. The suspension was degassed under vacuum and purged with H2 several times. The resulting mixture was stirred at room temperature for 16 hrs. After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with MeOH (50 mL). The combined filtrates were concentrated to dryness to give 3-(4-((5-hydroxypentyl)oxy)phenyl)piperidine-2, 6-dione (1.5 g, 5.15 mmol, 73%) as a white solid. LCMS (ESI) m/z = 292 [M+H]+.
[00323] STEP D: 5-(4-(2, 6-dioxopiperidin-3-yl)phenoxy)pentyl methane sulfonate
[00324] To a solution of 3-(4-((5-hydroxypentyl)oxy)phenyl)piperidine-2, 6-dione (1.5 g, 5.15 mmol, 1 eq.) in DCM (50 ml) were added TEA (1.0 g, 10.3 mmol, 2 eq.) and MsCl (587 mg, 5.66 mmol, 1.1 eq.). The reaction mixture was stirred at 25 °C for 1 hr under N2 atmosphere. After completion, the reaction mixture was diluted with water (10 mL) and extracted with DCM (20 mL *3). The combined organic layer was washed with brine (10 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure to give 5-(4- (2,6-dioxopiperidin-3-yl)phenoxy)pentyl methanesulfonate (1.7 g, 4.61 mmol, 89%) as a white solid. LCMS (ESI) m/z = 370 [M+H]+.
[00325] STEP E: 3-(4-((5-iodopentyl)oxy)phenyl)piperidine-2, 6-dione
[00326] To a solution of 5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl methanesulfonate (1.7 g, 4.61 mmol, 1 eq.) in acetone (20 mL) was added Nal (2.1 g, 14.1 mmol, 3.0 eq.) at 25 °C. The reaction mixture was stirred at 80 °C for 2 hrs under N2 atmosphere. After completion, Na2S20s in H2O was added to the reaction solution until the yellow color faded away. The aqueous phase was extracted with EtOAc (10 mL x 2). The combined organic layers were washed with brine (50 mL), dried over Na2SO4 and concentrated under reduced pressure to give crude product. The residue was purified by column chromatography on silica gel to give 3-(4-((5-iodopentyl)oxy)phenyl)piperidine-2, 6-dione (1.5 g, 3.74 mmol, 82%) as a white solid. LCMS (ESI) m/z = 402 [M+H]+.
[00327] STEP F: tert-butyl (6R)-6-(l-(5-(4-(2, 6-dioxopiperidin-3-yl)phenoxy)pentyl)-2- oxo-1, 2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate and tert-butyl (6R)-6-(2- ((5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4- carboxylate
[00328] To a solution of 3-(4-((5-iodopentyl)oxy)phenyl)piperidine-2, 6-dione (1 g, 2.49 mmol, 1 eq.) and tert-butyl (R)-6-(2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4- carboxylate (723 mg, 2.49 mml, 1 eq.) in CH3CN (20 mL) and t-BuOH (10 mL) was added and CS2CO3 (2.04 g, 6.23 mmol, 2.5 eq.) at 25 °C. The reaction mixture was stirred at 80 °C for 2 hrs under N2 atmosphere. The mixture was purified by Cl 8 column to afford tert -butyl (6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (180 mg, 0.32 mmol, 13% ) and tert-butyl (6R)-6-(2-((5- (4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4- carboxylate (69 mg, 0.12 mmol, 5%) both isomers as white solid. LCMS (ESI) m/z = 564 [M+H]+.
[00329] STEP G: 3-(4-((5-(2-oxo-4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H)~ yl)pentyl)oxy)phenyl)piperidine-2, 6-dione
[00330] To a solution of tert-butyl (6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3- yl)phenoxy)pentyl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (90 mg, 0.16 mmol, 1 eq.) in DCM (2 mL) was added TFA (1 mL) and the resulting mixture was stirred at room temperature for 0.5 hrs. After completion, the reaction mixture was concentrated under reduced pressure to give 3-(4-((5-(2-oxo-4-((R)-4-azaspiro[2.4]heptan-6- yl)pyridin-l(2H)-yl)pentyl)oxy)phenyl)piperidine-2, 6-dione (74 mg , quant.) as a yellow oil. LCMS (ESI) m/z = 464 [M+H]+.
[00331] STEP H: tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3- yl)phenoxy)pentyl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
[00332] A solution of (3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (52 mg, 0.16 mmol, 1 eq.), DIEA (103 mg, 0.80 mmol, 5 eq.) and HATU (73 mg, 0.19 mmol, 1.2 eq.) in DMF (1 mL) was stirred at room temperature for 20 min. Then a solution of 3-(4-((5-(2-oxo-4-((R)-4- azaspiro[2.4]heptan-6-yl)pyridin-l(2H)-yl)pentyl)oxy)phenyl)piperidine-2, 6-dione (74 mg , 0.16 mmol, 1 eq.) in DMF (1 mL) was added. The reaction mixture was stirred at room temperature for 1 hr. After completion, the reaction mixture was purified by Cl 8 column to afford tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)-
2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5- oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (112 mg, 0.14 mmol, 91%) as a white solid. LCMS (ESI) m/z = 772 [M+H]+.
[00333] STEP I: 3-( 4-((5-( 4-( (R)-4-( 3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin-l(2H)- yl)pentyl)oxy)phenyl)piperidine-2, 6-dione
[00334] To a solution of tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(5-(4-(2,6-dioxopiperidin-
3-yl)phenoxy)pentyl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5- oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (112 mg, 0.14 mmol ) in DCM (3 mL) was added TFA (1 mL). The reaction mixture was stirred at room temperature for 0.5 hrs. The reaction mixture was concentrated under reduce pressure to give 3-(4-((5-(4-((R)-4- ((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4- azaspiro[2.4]heptan-6-yl)-2-oxopyridin-l(2H)-yl)pentyl)oxy)phenyl)piperidine-2, 6-dione (94 mg, quant.) (TFA salt) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI) m/z = 672 [M+H]+.
[00335] STEP J: ((2-( ((3S, 6S, 10aS)-3-( ( 6R)-6-( 1 -(5-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)pentyl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphonic acid
[00336] To a solution of 3-(4-((5-(4-((R)-4-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin- l(2H)-yl)pentyl)oxy)phenyl)piperidine-2, 6-dione (47 mg , 70 pmol, 1.0 eq.) in DMF (2 mL ) were added DIE A (90 mg, 0.70 mmol, 10 eq.) and (difluoro(2- ((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (32 mg, 67 pmol, 0.95 eq ). The reaction mixture was stirred at room temperature for 0.5 hrs. After completion, the reaction mixture was purified by prep-HPLC to afford ((2-(((3S,6S,10aS)-3- ((6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 17, 32.7 mg, 34 pmol, 49%) as a white solid.
[00337] 1 H NMR (400 MHz, DMSO- 6) 5 10.78 (s, 1H), 8.91-8.80 (m, 1H), 8.31 (s, 1H),
8.14-8.03 (m, 2H), 7.63-7.53 (m, 2H), 7.12-7.05 (m, 2H), 6.88-6.80 (m, 2H), 6.32 (s, 1H), 6.24-6.18 (m, 1H), 4.98-4.89 (m, 1H), 4.51-4.47 (m, 1H), 4.24-4.21 (m, 1H), 4.07-4.04 (m, 1H), 3.91-3.88 (m, 2H), 3.84-3.80 (m, 2H), 3.77-3.74 (m, 1H), 3.39-3.32 (m, 1H), 2.70-2.59 (m, 1H), 2.35-1.20 (m, 26H), 0.47 (s, 2H).
[00338] LCMS (ESI) m/z = 962.3 [M+H]+.
[00339] STEP K: S,S^ ((((2-(((3S, 6S, 10aS)-3-((6R)-6-(l-(5-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)pentyl)-2-oxo-l, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate
[00340] To a solution of 4-nitrophenyl 5-((bis(2- (butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (45 mg, 67 pmol, 0.95 eq.) in DMF (1 ml ) were added DIEA (45 mg, 350 pmol, 5 eq.) and 3-(4-((5-(4- ((R)-4-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4- azaspiro[2.4]heptan-6-yl)-2-oxopyridin-l(2H)-yl)pentyl)oxy)phenyl)piperidine-2, 6-dione (47 mg, 70 pmol, 1.0 eq.). The reaction mixture was stirred at 40 °C for 16 hrs under N2 atmosphere. The mixture was purified by prep-HPLC to afford S,SE(((((2-(((3S,6S,10aS)-3- ((6R)-6-(l-(5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l- diyl)) dibutanethioate (Compound 18, 18.1 mg, 15 pmol, 21%) as a white solid.
[00341] ’H NMR (400 MHz, DMSO- 6) 5 10.79 (s, 1H), 8.97-8.87 (m, 1H), 8.35 (s, 1H),
8.23-8.11 (m, 2H), 7.65-7.53 (m, 2H), 7.18-7.03 (m, 2H), 6.91-6.76 (m, 2H), 6.32 (s, 1H),
6.24-6.16 (m, 1H), 5.03-4.86 (m, 1H), 4.56-4.41 (m, 1H), 4.30-4.02 (m, 6H), 3.97-3.66 (m, 6H), 3.19-3.07 (m, 4H), 2.70-2.59 (m, 1H), 2.56-2.51 (m, 4H), 2.49-2.41 (m, 1H), 2.32-1.20 (m, 29H), 0.92-0.79 (m, 6H), 0.47 (s, 2H).
[00342] LCMS (ESI) m/z = \222A [M+H]+.
[00343] STEP L: 3-(4-((5-((4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-2- yl)oxy)pentyl)oxy)phenyl)piperidine-2, 6-dione
[00344] To a solution of tert-butyl (6R)-6-(2-((5-(4-(2,6-dioxopiperidin-3- yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (69 mg, 0.12 mmol, 1 eq.) in DCM (2 ml) was added TFA (1 ml). The reaction mixture was stirred at room temperature for 0.5 hrs. After completion, the reaction mixture was concentrated under reduced pressure to give 3-(4-((5-((4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-2- yl)oxy)pentyl)oxy)phenyl)piperidine-2, 6-dione (57 mg , quant.) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI) m/z = 464 [M+H]+.
[00345] STEP M: tert-butyl ((3S,6S,10aS)-3-((6R)-6-(2-((5-(4-(2,6-dioxopiperidin-3- yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
[00346] A solution of (3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (40 mg, 0.12 mmol, 1 eq.), DIEA (79 mg, 0.61 mmol, 5 eq.) and HATU (56 mg, 0.15 mmol, 1.2 eq ) in DMF (1 ml) was stirred at room temperature for 20 min. Then a solution of 3-(4-((5-((4-((R)-4-azaspiro[2.4]heptan-6- yl)pyridin-2-yl)oxy)pentyl)oxy)phenyl)piperidine-2, 6-dione (57 mg , 0.12 mmol, 1 eq.) in DMF (1 ml) was added. The reaction mixture was stirred at room temperature for 1 hr. The reaction mixture was purified by C18 column to afford tert-butyl ((3S,6S,10aS)-3-((6R)-6-(2- ((5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (43 mg, 56 pmol, 46%) as a white solid. LCMS (ESI) m/z = 772 [M+H]+.
[00347] STEP N: 3-(4-((5-((4-( (R)-4-((3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a ]azocine-3-carbonyl)-4-azaspiro[ 2.4 ]heptan-6-yl)pyridin-2- yl)oxy)pentyl)oxy)phenyl)piperidine-2, 6-dione [00348] To a solution of tert-butyl ((3S,6S,10aS)-3-((6R)-6-(2-((5-(4-(2,6-dioxopiperidin- 3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5- oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (43 mg, 56 pmol, 1 eq.) in DCM (3 mL) was added TFA (1 mL). The reaction mixture was stirred at room temperature for 0.5 hrs. After completion, the reaction mixture was concentrated under reduce pressure to give 3-(4- ((5-((4-((R)-4-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4- azaspiro[2.4]heptan-6-yl)pyridin-2-yl)oxy)pentyl)oxy)phenyl)piperidine-2, 6-dione (34 mg , quant.) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI) m/z = 672 [M+H]+.
[00349] STEP O: ((2-(((3S,6S,10aS)-3-((6R)-6-(2-((5-(4-(2,6-dioxopiperidin-3- yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5- oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphonic acid
[00350] To a solution of 3-(4-((5-(4-((R)-4-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin- l(2H)-yl)pentyl)oxy)phenyl)piperidine-2, 6-dione (34 mg , 51 pmol, 1.0 eq.) and DIEA (65 mg, 0.50 mmol, 10 eq.) in DMF (2 mL) was added (difluoro(2- ((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (22 mg, 47 pmol, 0.95 eq.). The reaction mixture was stirred at room temperature for 0.5 hrs. After completion, the reaction mixture was purified by prep-HPLC to afford ((2-(((3S,6S,10aS)-3- ((6R)-6-(2-((5-(4-(2,6-dioxopiperidin-3-yl)phenoxy)pentyl)oxy)pyridin-4-yl)-4- azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (TFA salt) (Compound 19, 20.8 mg, 22 pmol, 43% ) as a white solid.
[00351] 1 H NMR (400 MHz, DMSO- 6) 5 10.78 (s, 1H), 8.89-8.80 (m, 1H), 8.31 (s, 1H),
8.15-8.02 (m, 3H), 7.62-7.55 (m, 1H), 7.13-7.07 (m, 2H), 7.00-6.95 (m, 1H), 6.88-6.77 (m, 3H), 4.96-4.93 (m, 1H), 4.53-4.48 (m, 1H), 4.27-4.21 (m, 3H), 4.16-4.09 (m, 1H), 3.95-3.88 (m, 2H), 3.81-3.72 (m, 2H), 3.57-3.47 (m, 1H), 2.68-2.60 (m, 1H), 2.40-1.38 (m, 25H), 0.61- 0.32 (m, 2H).
[00352] LCMS (ESI) m/z = 962.3 [M+H]+.
[00353] Preparation of S,SB(((((2-(((3S,6S,9aS)-3-(3-(4-((2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo [1,2-a] azepin-6-yl)carbamoyl)benzo [b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate
(Compound 20) and ((2-(((3S,6S,9aS)-3-(3-(4-((2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 21)
Figure imgf000120_0001
Figure imgf000121_0001
[00354] STEP A: tert-butyl 3-(4-((2-hydroxyethyl)(methyl)amino)pyridin-3-yl)azetidine-l- carboxylate
[00355] 2-Methylpropan-2-yl 3-(4-fluoropyridin-3-yl) azetidine-l-carboxylate (500 mg, 1.98 mmol, 1.0 eq) was added to a solution of 2 -(methylamino) ethan-l-ol (1.5 g, 19.8 mmol, 10.0 eq.) at 25 °C. The resulting mixture was heated to 120 °C and stirred for 12 hrs. After completion, the reaction mixture was purified by Biotage® Cl 8 column chromatography to get tert-butyl 3 -(4-((2 -hydroxy ethyl)(methyl)amino)pyri din-3 -yl)azeti dine- 1 -carboxylate (550 mg, 1.79 mmol, 90%) as a yellow oil. LCMS (ESI): m/z = 308 [M+H]+. [00356] ’H NMR (400 MHz, CDCh) 6 8 51 (s, 1H), 8.31 (d, J= 5.6 Hz, 1H), 6.88 (d, J=
5.6 Hz, 1H), 4.34 (t, J= 8.1 Hz, 2H), 4.11-3.97 (m, 3H), 3.79 (t, J= 5.7 Hz, 2H), 3.13 (t, J=
5.7 Hz, 2H), 2.78 (s, 3H), 2.57 (br, 1H), 1.46 (s, 9H).
[00357] STEP B: tert-butyl 3-(4-(methyl(2-((methylsulfonyl)oxy)ethyl)amino)pyridin-3- yl)azetidine-l -carboxylate
[00358] To a solution of tert-butyl 3 -(4-((2 -hydroxy ethyl)(methyl)amino)pyri din-3 - yl)azetidine-l -carboxylate (550 mg, 1.79 mmol, 1.0 eq.) in DCM (10 mL) were added TEA (0.5 mL, 3.58 mmol, 2.0 eq.) and MsCl (246 mg, 2.15 mmol, 1.2 eq.) at 0 °C and the resulting mixture was stirred at 0 °C for 1 hr. After completion, the reaction mixture was diluted with H2O (10 mL) and extracted with DCM (20 mL x 2). The combined organic layers was washed with brine (10 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure to afford crude tert-butyl 3-(4-(methyl(2-((methylsulfonyl)oxy)ethyl)amino)pyridin- 3 -yl)azetidine-l -carboxylate (550 mg, quant.) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 386 [M+H]+.
[00359] STEP C: tert-butyl 3-(4-((2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carboxylate
[00360] To a solution of tert-butyl 3-(4-(methyl(2- ((methylsulfonyl)oxy)ethyl)amino)pyridin-3-yl)azetidine-l-carboxylate (550 mg, 1.43 mmol, 1.0 eq) in DMF (10 mL) were added 4-(2,6-bis(benzyloxy)pyridin-3-yl)phenol (438 mg, 1.14 mmol, 0.8 eq.) and CS2CO3 (930 mg, 2.85 mmol, 2.0 eq.) at 25 °C. The mixture was heated to 50 °C and stirred for 12 hrs. After completion, the reaction mixture was diluted with H2O (10 mL) and extracted with EtOAc (20 mL x 2). The combined organic layers was washed with brine (10 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl 3-(4- ((2-(4-(2,6-bis(benzyloxy)pyridin-3-yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine- 1-carboxylate (550 mg, 0.82 mmol, 57%) as a yellow oil. LCMS (ESI): m/z = 673 [M+H]+.
[00361] STEP D: tert-butyl 3-(4-((2-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carboxylate
[00362] To a solution of tert-butyl 3-(4-((2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carboxylate (400 mg, 0.60 mmol 1.0 eq.) in THF (30 mL) was added Pd/C (50 mg) under nitrogen. The suspension was degassed under vacuum and purged with H2 several times. The resulting mixture was heated to 60 °C and stirred for 12 hrs under H2 (15 Psi). After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with THF (40 mL). The combined filtrates were concentrated under reduced pressure. The residue was purified by Biotage® C18 column chromatography to give tert-butyl 3-(4-((2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carboxylate (220 mg, 0.45 mmol, 75%) as a yellow oil. LCMS (ESI): m/z = 495 [M+H]+.
[00363] ’H NMR (400 MHz, CDCh) 8 8.49 (s, 1H), 8.34 (d, J= 5.6 Hz, 1H), 7.98 (s, 1H), 7.11 (d, J= 8.6 Hz, 2H), 6.88 (d, J= 5.6 Hz, 1H), 6.80 (d, J= 8.7 Hz, 2H), 4.38-4.32 (m, 2H), 4.12-4.01 (m, 5H), 3.75-3.69 (m, 1H), 3.41-3.35 (m, 2H), 2.85 (s, 3H), 2.79-2.61 (m, 2H), 2.31-2.16 (m, 2H), 1.46 (s, 9H).
[00364] STEP E: 3-(4-(2-((3-(azetidin-3-yl)pyridin-4- yl)(methyl)amino)ethoxy)phenyl)piperidine-2, 6-dione
[00365] To a solution of tert-butyl 3-(4-((2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carboxylate (100 mg, 0.20 mmol, 1.0 eq.) in dry DCM (6 mL) was added TFA (2 mL) at 25 °C. The mixture was stirred at 25 °C for 30 min. After completion, the reaction mixture was concentrated under reduced pressure to give crude (3-{4-[(2-{[3-(azetidin-3-yl)pyridin-4- yl](methyl)amino}ethyl)oxy]phenyl}hexahydropyridine-2, 6-dione (80 mg, quant.) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 395 [M+H]+.
[00366] STEP F: tert-butyl ((3S,6S,9aS)-3-(3-(4-((2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamate
[00367] To a mixture of (3S,6S,9aS)-6-((tert-butoxycarbonyl)amino)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carboxylic acid (75 mg, 0.24 mmol, 1.1 eq.) and HATU (92 mg, 0.24 mmol, 1.1 eq.) in DMF (1 mL) were added DIEA (85 mg, 0.66 mmol, 5.0 eq.) and 3-(4-(2- ((3-(azetidin-3-yl)pyridin-4-yl)(methyl)amino)ethoxy)phenyl)piperidine-2, 6-dione (87 mg, 0.22 mmol, 1.0 eq.). The resulting mixture was stirred at room temperature for 30 min. After completion, the reaction mixture was purified directly by Biotage® Cl 8 column chromatography to afford tert-butyl ((3S,6S,9aS)-3-(3-(4-((2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamate (130 mg, 0.21 mmol, 85%) as a white solid. LCMS (ESI): m/z = 689.7 [M+H]+. [00368] STEP G: 3-(4-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)(methyl)amino)ethoxy)phenyl)piperidine- 2, 6-dione
[00369] To a solution of tert-butyl ((3S,6S,9aS)-3-(3-(4-((2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamate (65 mg, 94 pmol, 1.0 eq.) in dry DCM (4 mL) was added TFA (1 mL) at room temperature. The mixture was stirred at room temperature for 2 hrs. After completion, the reaction mixture was concentrated under reduced pressure to give 3-(4-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2-a]azepine-3- carbonyl)azetidin-3-yl)pyridin-4-yl)(methyl)amino)ethoxy)phenyl)piperidine-2, 6-dione (50 mg, quant.) as a white solid, which was used in next step without further purification. LCMS (ESI): m/z = 589.4 [M+H]+.
[00370] STEP H: S, S /((( ((2-(((3S, 6S, 9aS)-3-(3-( 4-( ( 2-( 4-(2, 6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate
[00371] To a mixture of 3-(4-(2-((3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[ 1 ,2-a]azepine-3 -carbonyl)azeti din-3 -yl)pyridin-4- yl)(methyl)amino)ethoxy)phenyl)piperidine-2, 6-dione (50 mg, 85 pmol, 1.0 eq.) and DIEA (33 mg, 0.25 mmol, 3.0 eq.) in DMF (1 mL) was added 4-nitrophenyl 5-((bis(2- (butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (64 mg, 93 pmol, 1.1 eq.). The mixture was stirred at room temperature for 30 min. After completion, the reaction mixture was purified by prep-HPLC to give S,SE(((((2-(((3S,6S,9aS)-3-(3-(4-((2-(4- (2,6-dioxopiperidin-3-yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5- oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2, 1-diyl)) dibutanethioate (TFA salt) (Compound 20, 14.4 mg, 11 pmol, 13%) as a white solid.
[00372] ’H NMR (400 MHz, DMSO- 6) 5 10.78 (s, 1H), 8.88-8.72 (m, 1H), 8.40-8.25 (m, 3H), 8.24-8.11 (m, 2H), 7.59 (d, J= 5.7 Hz, 1H), 7.30-7.21 (m, 1H), 7.07 (d, J= 8.5 Hz, 2H), 6.76 (d, J= 8.0 Hz, 2H), 4.79-4.58 (m, 2H), 4.43-4.25 (m, 3H), 4.23-4.09 (m, 7H), 4.02- 3.72 (m, 5H), 3.14 (s, 7H), 2.68-2.59 (m, 1H), 2.58-2.52 (m, 4H), 2.44 (s, 1H), 2.23-2.07 (m, 2H), 2.04-1.91 (m, 3H), 1.90-1.65 (m, 7H), 1.60-1.50 (m, 4H), 0.89-0.83 (m, 6H).
[00373] LCMS (ESI): m/z = 1139.4 [M+H]+. [00374] STEP I: ((2-(((3S, 6S,9aS)-3-(3-(4-((2-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid [00375] To a mixture of (2S,4R)-l-((S)-2-((4-((3-(l-((3S,6S,9aS)-6-amino-5- oxooctahydro-lH-pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4- yl)oxy)butyl)amino)-3,3-dimethylbutanoyl)-4-hydroxy-N-(4-(4-methylthiazol-5- yl)benzyl)pyrrolidine-2-carboxamide (50 mg, 85 pmol, 1.0 eq.) and DIEA (33 mg, 0.25 mmol, 3.0 eq.) in DMF (1 mL) was added (difluoro(2- ((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (39.5 mg, 102 pmol, 1.2 eq.). The mixture was stirred at 25 °C for 30 min. After completion, the reaction mixture was purified by prep-HPLC to give ((2-(((3S,6S,9aS)-3-(3-(4-((2-(4-(2,6- dioxopiperidin-3-yl)phenoxy)ethyl)(methyl)amino)pyridin-3-yl)azetidine-l-carbonyl)-5- oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difhioromethyl)phosphonic acid (TFA salt) (Compound 21, 16.3 mg, 18 pmol, 21%) as a white solid.
[00376] ’H NMR (400 MHz, DMSO- 6) 5 10.78 (s, 1H), 8.74 (dd, J= 33.6, 7.4 Hz, 1H), 8.38-8.25 (m, 3H), 8.16-8.05 (m, 2H), 7.62-7.56 (m, 1H), 7.28-7.21 (m, 1H), 7.07 (d, J= 8.5 Hz, 2H), 6.75 (d, J= 7.4 Hz, 2H), 4.79-4.60 (m, 2H), 4.40-4.30 (m, 2H), 4.25-4.14 (m, 4H), 4.01-3.81 (m, 4H), 3.77-3.72 (m, 1H), 3.13 (s, 3H), 2.68-2.59 (m, 1H), 2.49-2.42 (m, 1H), 2.22-2.07 (m, 2H), 2.03-1.67 (m, 10H).
[00377] LCMS (ESI): m/z = 879.5 [M+H]+.
[00378] Preparation of ((2-(((3S,6S,10aS)-3-((reZ-3S,4R)-3-cyano-4-(3-(4-(l-(2,6- dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l- yl)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 22) and S,SB(((((2-(((3S,6S,10aS)-3-((re/-3S,4R)-3-cyano-4-(3-(4-(l-(2,6-dioxopiperidin-3-yl)- 2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 23)
Figure imgf000126_0001
Figure imgf000127_0001
Figure imgf000127_0002
Figure imgf000128_0001
[00379] STEP A: (E)-3-(3-bromophenyl)acrylonitrile
[00380] To a solution of diethyl (cyanomethyl)phosphonate (9.56 g, 54.0 mmol, 1 eq.) in THF (50 mL ) was added (tert-butoxy)potassium (6.05 g, 54.0 mmol, 1 eq.) at 0 °C. The solution was stirred at room temperature for 1 hr, then 3 -bromobenzaldehyde (10 g, 54.0 mmol, 1 eq.) was added to the solution, the solution was stirred at room temperature for additional 1 hr. After completion, H2O (100 mL) was added to the solution, the solution was extracted with EtOAc (200 mL x 3). The organic layers were combined and washed with brine (100 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford (2E)-3-(3- bromophenyl)prop-2-enenitrile (10.0 g, 48.0 mmol, 89%) as a yellow solid. LCMS (ESI): m/z =208 [M+H]+.
[00381] STEP B: rac- (3S,4R)-l-benzyl-4-(3-bromophenyl)pyrrolidine-3-carbonitrile [00382] To a solution of (2E)-3-(3-bromophenyl)prop-2-enenitrile (10 g, 48.0 mmol, 1 eq.) in DCM (100 mL ) were added benzyl(methoxymethyl)[(trimethylsilyl)methyl]amine (11.3 g, 48.0 mmol, 1 eq.) and TFA (2 mL). The solution was stirred at room temperature overnight. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by C18 column to afford rac- 1 -benzyl -4 -(3 -brom ophenyl)pyrrolidine-3 -carbonitrile (4.0 g, 11.7 mmol, 25%) as a yellow oil. LCMS (ESI): m/z = 341 [M+H]+.
[00383] STEP C: rac- (3S,4R)-4-(3-bromophenyl)pyrrolidine-3-carbonitrile
[00384] To a solution of rac-l-benzyl-4-(3-bromophenyl)pyrrolidine-3-carbonitrile (3 g, 8.79 mmol, 1 eq.) in DCE (30 mL ) was added ACECI (6.27 g, 43.9 mmol, 5 eq.). The solution was stirred at 90 °C overnight. After completion, the reaction mixture concentrated under reduced pressure. The residue was dissolved in MeOH (100 mL) and stirred under reflux for 3 hrs. The mixture was concentrated under reduced pressure to afford crude rac- 4- (3 -brom ophenyl)pyrrolidine-3 -carbonitrile (2.0 g, 7.96 mmol, 91%) as a yellow oil. LCMS (ESI): m/z =251 [M+H]+.
[00385] STEP D: rac-tert-butyl (3R,4S)-3-(3-bromophenyl)-4-cyanopyrrolidine-l- carboxylate
[00386] To a solution of rac-4-(3 -brom ophenyl)pyrrolidine-3 -carbonitrile (1.5 g, 5.97 mmol, 1 eq.) in DCM (30 mL ) were added BOC2O (2.59 g, 11.9 mmol, 2 eq.) and TEA (1.80 g, 17.9 mmol, 3 eq.) The solution was stirred at 25 °C overnight. After completion, the reaction mixture concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford crude rac- tert-butyl 3-(3-bromophenyl)-4- cyanopyrrolidine-1 -carboxylate (1.5 g, 4.27 mmol, 72%) as a yellow oil. LCMS (ESI): m/z =351 [M+H]+.
[00387] STEP E: 5-oxotetrahydrofuran-2-carboxylic acid
[00388] To a solution of glutamic acid (21 g, 143 mmol, 1.0 eq. ) in H2O (80 mL) and HC1 (12 M, 21 mL) was added a solution ofNaNCh (14.7 g, 2.13 mol, 15.0) in H2O (40 mL) at -5 °C. And the resulting mixture was stirred for 12 hrs. After completion, the mixture was concentrated under reduced pressure and then dissolved in EtOAc (50 mL). The suspension was filtered and the filter cake was washed with EtOAc (10 mL x 3). The combined filtrate was dried over anhydrous Na2SO4, then concentrated under reduced pressure to afford crude 5-oxotetrahydrofuran-2-carboxylic acid (10 g, quant.) as a colorless oil, which was used directly in next step without further purification.
[00389] STEP F: N-(4-methoxybenzyl)-5-oxotetrahydrojuran-2-carboxamide [00390] To a solution of 5-oxotetrahydrofuran-2-carboxylic acid (10 g, 76.8 mmol, 1.0 eq.) in DCM (100 mL ) was added SOCh (45.5 g, 383 mmol, 5.0 eq.). The solution was stirred at room temperature for 2 hrs, then concentrated under vacuum. The residue was dissolved in DCM (100 mL), then l-(4-methoxyphenyl)methanamine (10.5 g, 76.8 mmol, 1.0 eq.) and TEA (15.4 g, 153 mmol, 2.0 eq) were added to the solution. The solution was stirred at room temperature overnight. After completion, the mixture was concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford N-[(4-methoxyphenyl)methyl]-5-oxooxolane-2- carboxamide (10.0 g, 40.1 mmol, 52%) as a yellow solid. LCMS (ESI): m/z = 250 [M+H]+. [00391] STEP G: 3-hydroxy-l-(4-methoxybenzyl)piperidine-2, 6-dione
[00392] To a solution of N-[(4-methoxyphenyl)methyl]-5-oxooxolane-2-carboxamide (10 g, 40.1 mmol, 1 eq.) in THF (100 mL) was added (tert-butoxy)potassium (4.49 g, 40.1 mmol, 1 eq.) at -65 °C. The solution was stirred at -65 °C for 4 hrs. After completion, the reaction mixture was quenched by adding H2O (100 mL), then extracted with EtOAc (100 mL x 3). The organic layers were combined and washed with brine (100 mL), dried over anhydrous Na2SC>4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford 3 -hydroxy- 1 -[(4- methoxyphenyl)methyl]piperidine-2, 6-dione (5.0 g, 20.0 mmol, 50%) as a colorless oil.
LCMS (ESI): m/z = 250 [M+H]+.
[00393] STEP H: l-(4-methoxybenzyl)-2,6-dioxopiperidin-3-yl trifluoromethane sulfonate [00394] To a solution of 3-hydroxy-l-[(4-methoxyphenyl)methyl]piperidine-2, 6-dione (5 g, 20.0 mmol, 1 eq.) in DCM (50 mL) were added pyridine (3.16 g, 40.0 mmol, 2 eq.) and trifluoromethanesulfonic acid anhydride (6.28 g, 20.0 mmol, 1 eq.) at 0 °C. The resulting solution was stirred at room temperature overnight. After completion, the mixture was concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford l-[(4-methoxyphenyl)methyl]-2,6-dioxopiperidin-3-yl trifluoromethanesulfonate (4.0 g, 10.4 mmol, 52%) as a white solid. LCMS (ESI): m/z = 382 [M+H]+.
[00395] STEP I: tert-butyl 4-(3-amino-4-nitrophenyl)piperazine-l -carboxylate [00396] To a solution of 5 -fluoro-2 -nitroaniline (3 g, 19.2 mmol, 1 eq.) in DMF (25 mL) were added K2CO3 (5.29 g, 38.4 mmol, 2 eq.) and tert-butyl piperazine- 1 -carboxylate (3.57 g, 19.2 mmol, 1 eq.). The solution was stirred at 80 °C overnight. After completion, the mixture was poured into H2O (500 mL), the product was collected by filtration to afford tert- butyl 4-(3-amino-4-nitrophenyl)piperazine-l -carboxylate (5.00 g, 15.5 mmol, 81%) as a yellow solid. LCMS (ESI): m/z = 323 [M+H]+.
[00397] STEP J: tert-butyl 4-(3-((4-methoxybenzyl)amino)-4-nitrophenyl)piperazine-l- carboxylate
[00398] To a solution of tert-butyl 4-(3-amino-4-nitrophenyl)piperazine-l -carboxylate (3 g, 9.30 mmol, 1 eq.) in DMF (30 mL) was added NaH (60 wt%) (446 mg, 18.6 mmol, 2 eq.) at 0 °C, the solution was stirred at 0 °C for 30 min, then l-(chloromethyl)-4- methoxybenzene (1.45 g, 9.30 mmol, 1 eq.) was added to the solution. The reaction mixture was warmed up to room temperature and stirred for 1 hr. After completion, the reaction mixture was quenched by adding H2O (100 mL), then extracted with EtOAc (100 mL x 3). The organic layers were combined and washed with brine (100 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl 4-(3-{[(4-methoxyphenyl)methyl]amino}-4- nitrophenyl)piperazine-l -carboxylate (3.0 g, 6.77 mmol, 73%) as a yellow solid. LCMS (ESI): m/z = 443 [M+H]+.
[00399] STEP K: tert-butyl 4-(4-amino-3-((4-methoxybenzyl)amino)phenyl)piperazine-l- carboxylate
[00400] To a solution of tert-butyl 4-(3-{[(4-methoxyphenyl)methyl]amino}-4- nitrophenyl)piperazine-l -carboxylate (2 g, 4.51 mmol, 1 eq.) in EtOH (30 mL) and saturated NH4CI (30 mL, aq. ) was added zinc (2.94 g, 45.1 mmol, 10 eq.), the solution was stirred at room temperature for 3 hrs. After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with MeOH (20 mL). The combined filtrates were concentrated under reduced pressure. The residue was dissolved in H2O (30 mL) and extracted with EtOAc (50 mL x 3). The organic layers were combined and washed with brine (100 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl 4-(4- amino-3-{[(4-methoxyphenyl)methyl]amino}phenyl)piperazine-l-carboxylate (1.80 g, 4.36 mmol, 97%) as a yellow solid. LCMS (ESI): m/z =413 [M+H]+.
[00401] STEP L: tert-butyl 4-(3-(4-methoxybenzyl)-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-5-yl)piperazine-l -carboxylate
[00402] To a solution of tert-butyl 4-(4-amino-3-{[(4- methoxyphenyl)methyl]amino}phenyl)piperazine-l-carboxylate (1.5 g, 3.63 mmol, 1 eq.) in THF (20 mL) was added CDI (1.17 g, 7.26 mmol, 2 eq.). The solution was stirred at 50 °C for 1 hr. The mixture was concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl 4-{3-[(4- methoxyphenyl)methyl]-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5-yl}piperazine-l- carboxylate (1.50 g, 3.42 mmol, 94%) as a yellow solid. LCMS (ESI): m/z =439 [M+H]+. [00403] STEP M: tert-butyl 4-(3-(4-methoxybenzyl)-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-5-yl)piperazine-l -carboxylate
[00404] To a solution of tert-butyl 4-{3-[(4-methoxyphenyl)methyl]-2-oxo-2,3-dihydro- lH-l,3-benzodiazol-5-yl}piperazine-l-carboxylate (1 g, 2.28 mmol, 1 eq.) in THF (10 mL ) was added LDA (1.2 mL, 2 M in THF, 1.05 eq.) at 0 °C and the mixture was stirred at 0 °C for 1 hr, then l-[(4-methoxyphenyl)methyl]-2,6-dioxopiperidin-3-yl trifluoromethanesulfonate (869 mg, 2.28 mmol, 1 eq.) was added to the solution. The solution was warmed up to room temperature and stirred for 1 hr. After completion, the reaction mixture was quenched by adding H2O (20 mL), then extracted with EtOAc (50 mL x 3). The organic layers were combined and washed with brine (20 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl 4-{3-[(4-methoxyphenyl)methyl]-l-{ l-[(4- methoxyphenyl)methyl]-2,6-dioxopiperidin-3-yl}-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5- yl}piperazine-l-carboxylate (1 g, 1.49 mmol, 66%) as a yellow solid. LCMS (ESI): m/z =670 [M+H]+.
[00405] STEP N: l-(4-methoxybenzyl)-3-(3-(4-methoxybenzyl)-2-oxo-5-(piperazin-l-yl)- 2, 3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione
[00406] A solution of tert-butyl 4-{3-[(4-methoxyphenyl)methyl]-l-{ l-[(4- methoxyphenyl)methyl]-2,6-dioxopiperidin-3-yl}-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5- yl}piperazine-l-carboxylate (1 g, 1.49 mmol, 1 eq.) in HC1 / Ethyl Acetate (25 mL, 3 M) was stirred at room temperature for 1 hr. After completion, the reaction mixture was concentrated under reduced pressure. The residue was dissolved in H2O (10 mL), cooled down in an ice bath, then neutralized carefully with NaHCCL (aq.) until the pH was adjusted to pH = 9. The resulting mixture was extracted with DCM (20 mL x 3), and the combined organic layers were washed with brine (10 mL), dried over with anhydrous Na2SO4, then concentrated under reduced pressure to give crude l-[(4-methoxyphenyl)methyl]-3-{3-[(4- methoxyphenyl)methyl] -2-oxo-5 -(piperazin- 1 -y 1 ) -2 , 3 -dihydro- 1 H- 1 , 3 -benzodi azol- 1 - yl}piperidine-2, 6-dione (800 mg, quant.) as a blue solid, which was used in next step directly without further purification. LCMS (ESI): m/z =570 [M+H]+. [00407] STEP O: tert-butyl (rel-3S,4R)-3-cyano-4-(3-(4-(3-(4-methoxybenzyl)-l-(l-(4- methoxybenzyl)-2,6-dioxopiperidin-3-yl)-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5- yl)piperazin-l-yl)phenyl)pyrrolidine-l -carboxylate
[00408] To a solution of l-[(4-methoxyphenyl)methyl]-3-{3-[(4-methoxyphenyl)methyl]- 2-oxo-5-(piperazin-l-yl)-2,3-dihydro-lH-l,3-benzodiazol-l-yl}piperidine-2, 6-dione (500 mg, 877 pmol, 1 eq.) in toluene (10 mL) were added rac-tert-butyl 3-(3-bromophenyl)-4- cyanopyrrolidine-1 -carboxylate (308 mg, 877 pmol, 1 eq.), Pd2(dba)s (80 mg, 88 pmol, 0.1 eq.), Ruphos (82 mg, 175 pmol, 0.2 eq.) and t-BuONa (168 mg, 1.75 mmol, 2 eq.). The solution was stirred at 80 °C for 2 hrs under N2. After completion, the solution was concentrated under reduced pressure. The residue was purified by Cl 8 column to afford tertbutyl (re/-3S,4R)-3-cyano-4-(3-(4-(3-(4-methoxybenzyl)-l-(l-(4-methoxybenzyl)-2,6- dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l- yl)phenyl)pyrrolidine-l -carboxylate (100 mg, 119 pmol, 14%) as a white solid. LCMS (ESI): m/z =840 [M+H]+.
[00409] STEP P: (rel-3S, 4R)-4-( 3-( 4-( 1 -(2, 6-dioxopiperidin-3-yl)-2-oxo-2, 3-dihydro-lH- benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-3-carbonitrile
[00410] To a solution of tert-butyl (re/-3S,4R)-3-cyano-4-(3-(4-(3-(4-m ethoxybenzyl)- 1- (1 -(4-methoxybenzyl)-2,6-dioxopiperi din-3 -yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5- yl)piperazin-l-yl)phenyl)pyrrolidine-l -carboxylate (300 mg, 357 pmol, 1 eq.) in TFA (3 mL ) was added trifluoromethanesulfonic acid (686 mg, 7.14 mmol, 20 eq.). The solution was stirred at 65 °C for 2 hrs. After completion, the solution was concentrated under reduced pressure. The residue was purified by C18 column to afford (re/-3S,4R)-4-(3-(4-(l-(2,6- dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l- yl)phenyl)pyrrolidine-3-carbonitrile (80 mg, 160 pmol, 45%) as a white solid. LCMS (ESI): m/z =500 [M+H]+.
[00411] STEP Q: tert-butyl ((3S,6S,10aS)-3-((rel-3S,4R)-3-cyano-4-(3-(4-(l-(2,6- dioxopiperidin-3-yl)-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l- yl)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate [00412] To a solution of (3S,6S,10aS)-6-{[(tert-butoxy)carbonyl]amino}-5-oxo- decahydropyrrolo[l,2-a]azocine-3-carboxylic acid (13 mg, 40 pmol, 1.0 eq.) in DMF (5 mL ) were added HATU (15 mg, 40 pmol, 1.0 eq.), TEA (8 mg, 80 pmol, 2 eq.) and (re/- 3S,4R)-4-(3-(4-(l-(2,6-dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5- yl)piperazin-l-yl)phenyl)pyrrolidine-3 -carbonitrile (20 mg, 40 pmol, 1 eq.). The solution was stirred at room temperature for 1 hr. After completion, the mixture was purified by Cl 8 column directly to afford tert-butyl ((3S,6S,10aS)-3-((re/-3S,4R)-3-cyano-4-(3-(4-(l-(2,6- dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l- yl)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (20 mg, 25 pmol, 62%) as a white solid. LCMS (ESI): m/z =808 [M+H]+.
[00413] STEP R: (rel-3S, 4R)-1-((3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a]azocine-3-carbonyl)-4-(3-(4-(l-(2,6-dioxopiperidin-3-yl)-2-oxo-2, 3-dihydro-lH- benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-3-carbonitrile
[00414] To a solution of tert-butyl ((3S,6S,10aS)-3-((re/-3S,4R)-3-cyano-4-(3-(4-(l-(2,6- dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l- yl)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (20 g, 25 mmol, 1 eq.) in DCM (2 mL) was added TFA (1 mL). The solution was stirred at room temperature for 1 hr. After completion, the reaction mixture was concentrated under reduced pressure to afford crude (re/-3S,4R)-l-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2- a] azocine-3 -carbonyl)-4-(3 -(4-( 1 -(2, 6-dioxopiperi din-3 -yl)-2-oxo-2, 3 -dihydro- 1 H- benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-3-carbonitrile (15 mg, quant.) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI): m/z =708 [M+H]+.
[00415] STEP S: ((2-(((3S, 6S, 10aS)-3-((rel-3S, 4R)-3-cyano-4-(3-(4-(l-(2, 6- dioxopiperidin-3-yl)-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l- yl)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid [00416] To a solution of (re/-3S,4R)-l-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-(3-(4-(l-(2,6-dioxopiperidin-3-yl)-2-oxo- 2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-3-carbonitrile (7 mg, 10 pmol, 1 eq.) in DMF (2 mL ) were added TEA (5 mg, 49 pmol, 5 eq.) and [difluoro({2-[(2, 3,4,5, 6-pentafluorophenoxy)carbonyl]-l-benzothiophen-5- yl})methyl]phosphonic acid (5 mg, 10 pmol, 1 eq.). The resulting mixture was stirred at room temperature for 2 hrs. After completion the reaction mixture was purified by prep- HPLC to afford ((2-(((3S,6S,10aS)-3-((re/-3S,4R)-3-cyano-4-(3-(4-(l-(2,6-dioxopiperidin-3- yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difhioromethyl)phosphonic acid (Compound 22, 1.1 mg, 1 pmol, 11%) as a white solid. [00417] 1H NMR (400 MHz, DMSO- 6) 5 11.18-10.79 (m, 2H), 8.94-8.70 (m, 1H), 8.39- 7.99 (m, 3H), 7.71-7.50 (m, 1H), 7.31-6.60 (m, 7H), 5.34-5.18 (m, 1H), 5.02-4.87 (m, 1H), 4.61-4.48 (m, 1H), 4.36-4.27 (m, 1H), 4.04-3.96 (m, 1H), 3.87-3.81 (m, 1H), 3.77-3.72 (m, 1H), 3.66-3.62 (m, 1H), 3.54-3.50 (m, 1H), 3.27-3.18 (m, 4H), 2.93-2.83 (m, 1H), 2.74-2.61 (m, 1H), 2.33-2.17 (m, 1H), 2.09-1.95 (m, 3H), 1.89-1.72 (m, 5H), 1.67-1.46 (m, 3H), 1.35- 1.14 (m, 4H).
[00418] LCMS (ESI): m/z =998 [M+H]+.
[00419] STEP T: S,S^((((2-(((3S, 6S, 10aS)-3-((rel-3S, 4R)-3-cyano-4-(3-(4-(l-(2, 6- dioxopiperidin-3-yl)-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l- yl)phenyl)pyrrolidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl) carbamoyl) benzo [b ]thiophen-5-yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1- diyl)) dibutanethioate
[00420] To a solution of (re/-3S,4R)-l-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-(3-(4-(l-(2,6-dioxopiperidin-3-yl)-2-oxo- 2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-3-carbonitrile (7 mg, 10 pmol, 1 eq.) in DMF (2 mL ) were added TEA (5 mg, 49 pmol, 5 eq.) and 4- nitrophenyl 5-({bis[2-(butanoylsulfanyl)ethoxy]phosphoryl}difluoromethyl)-l- benzothiophene-2 -carb oxy late (7 mg, 10 pmol, 1 eq.). The solution was stirred at room temperature for 1 hr. After completion the reaction mixture was purified by prep-HPLC to afford S,SE(((((2-(((3S,6S,10aS)-3-((re/-3S,4R)-3-cyano-4-(3-(4-(l-(2,6-dioxopiperidin-3- yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperazin-l-yl)phenyl)pyrrolidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 23, 2.1 mg, 2 pmol, 17%) as a white solid.
[00421] *H NMR (400 MHz, DMSO- 6) 6 11.13-10.95 (m, 1H), 10.80 (s, 1H), 8.99-8.82 (m, 1H), 8.40-8.06 (m, 3H), 7.63-7.51 (m, 1H), 7.29-7.17 (m, 1H), 7.12-7.03 (m, 1H), 6.98- 6.79 (m, 3H), 6.71-6.60 (m, 2H), 5.36-5.16 (m, 1H), 5.04-4.89 (m, 1H), 4.62-3.42 (m, 12H), 3.20-3.07 (m, 8H), 2.95-2.81 (m, 1H), 2.74-2.55 (m, 3H), 2.31-1.45 (m, 20H), 1.31-1.18 (m, 4H), 0.91-0.80 (m, 6H).
[00422] LCMS (ESI): m/z =1258.7 [M+H]+.
[00423] Preparation of ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(l-(l-(2,6-dioxopiperidin-3-yl)- 2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin- 4-yl)-4- azaspiro [2.4] heptane-4-carbonyl)-5-oxodecahydropyrrolo [1,2-a] azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 24) and S,SB(((((2-(((3S,6S,10aS)-3-((6R)-6-(l-(l-(l-(2,6-dioxopiperidin-3-yl)-2-oxo-2,3- dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro [2.4] heptane-4-carbonyl)-5-oxodecahydropyrrolo [1,2-a] azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane- 2,1-diyl)) dibutanethioate (Compound 25)
Figure imgf000137_0001
Figure imgf000138_0001
[00424] STEP A: 2 -(trimethylsilyl) ethyl 4-bromopiperidine-l -carboxylate
[00425] To a solution of 4-bromopiperidine hydrobromide (9 g, 37.0 mmol, 1 eq.) and TEA (7.8 mL, 55.5 mmol, 1.5 eq.) in dioxane/EEO (100 mL/100 mL ) was added 2,5- dioxopyrrolidin-l-yl (2-(trimethylsilyl)ethyl) carbonate (12.5 g, 48.1 mmol, 1.3 eq.) at 20 °C. The solution was stirred at room temperature for 12 hrs. After completion, H2O (300 mL) was added to the solution, the solution was extracted with EtOAc (200 mL x 3). The organic layers were combined and washed with brine (300 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford 2-(trimethylsilyl)ethyl 4-bromopiperidine-l- carboxylate (10 g, 32.6 mmol, 88%) as a colorless oil. LC-MS (ESI) m/z = 308 [M+H]+. [00426] STEP B: tert-butyl (R)-6-(2-oxo-l-(l-((2- (trimethylsilyl) ethoxy) carbonyl)piperidin-4-yl)-l,2-dihydropyridin-4-yl) -4- azaspiro[ 2.4 ]heptane-4-carboxylate
[00427] A solution of tert-butyl (R)-6-(2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (1 g, 3.45mmol, 1.0 eq.), 2-(trimethylsilyl)ethyl 4- bromopiperidine-1 -carboxylate (5.2 g, 17.3 mmol, 5 eq.) and CS2CO3 (2.2 g, 6.9 mmol, 2eq.) in DMF (10 mL ) was stirred at 100 °C overnight. After completion, H2O (300 mL) was added to the solution, the solution was extracted with EtOAc (200 mL x 3). The organic layers were combined and washed with brine (300 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl (R)-6-(2-oxo-l-(l-((2- (trimethylsilyl)ethoxy)carbonyl)piperidin-4-yl)-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (600 mg, 34%) as a yellow oil. LC-MS (ESI) m/z = 518 [M+H]+.
[00428] STEP C: tert-butyl (R)-6-(2-oxo-l-(piperidm-4-yl)-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carboxylate
[00429] A solution of tert-butyl (R)-6-(2-oxo-l-(l-((2- (trimethylsilyl)ethoxy)carbonyl)piperidin-4-yl)-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (600 mg, 1.2 mmol, 1.0 eq.) and TBAF (909.1 mg, 3.6 mmol, 3 eq.) in THF (10 mL) was stirred at 60 °C for 12 hrs. After completion, the reaction mixture concentrated under reduced pressure to afford tert -butyl (R)-6-(2-oxo-l-(piperidin-4- yl)-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (270 mg, crude) as a yellow oil, which was used in the next step without further purification. LCMS (ESI): m/z =374 [M+H]+.
[00430] STEP D: tert-butyl (R)-6-(l-(l-(3-ammo-4-nitrophenyl)piperidin-4-yl)-2-oxo-l,2- dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carboxylate
[00431] A solution of tert-butyl (R)-6-(2-oxo-l-(piperidin-4-yl)-l,2-dihydropyridin-4-yl)- 4-azaspiro[2.4]heptane-4-carboxylate (270 mg, 0.72 mmol, 1.0 eq.), 5 -fluoro-2 -nitroaniline (113 mg, 0.72 mmol, 1.0 eq.) and K^CCh (299 mg, 2.16 mmol, 3 eq.) in DMF (3 mL) was stirred at 80 °C for 16 hrs. After completion, H2O (50 mL) was added to the solution, the solution was extracted with EtOAc (50 mL x 3). The organic layers were combined and washed with brine (50 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl (R)-6-(l-(l-(3-amino-4-nitrophenyl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4- yl)-4-azaspiro[2.4]heptane-4-carboxylate (280 mg, 76%) as a yellow solid. LCMS (ESI): m/z =510 [M+H]+.
[00432] STEP E: tert-butyl (R)-6-(l-(l-(3-amino-4-nitrophenyl)piperidm-4-yl)-2-oxo-l ,2- dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carboxylate
[00433] To a solution of tert-butyl (R)-6-(l-(l-(3-amino-4-nitrophenyl)piperidin-4-yl)-2- oxo-1, 2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (280 mg, 0.55 mmol, 1.0 eq.) in DMF was added 60% NaH (44 mg, 1.1 mmol, 2 eq.) at 0 °C. To the reaction mixture was added PMBC1 (94.4 mg, 0.6 mmol, 1.1 eq.). The reaction mixture was stirred at 20 °C for 0.5 hrs. After completion, H2O (50 mL) was added to the solution, the solution was extracted with EtOAc (50 mL x 3). The organic layers were combined and washed with brine (50 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl (R)-6-(l-(l-(3- amino-4-nitrophenyl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane- 4-carboxylate (280 mg, 81%) as a yellow oil. LCMS (ESI): m/z = 630 [M+H]+.
[00434] STEP F: tert-butyl (R)-6-(l-(l-(4-amino-3-((4- methoxybenzyl)amino)phenyl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carboxylate
[00435] A solution of tert-butyl (R)-6-(l-(l-(3-amino-4-nitrophenyl)piperidin-4-yl)-2-oxo- l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (280 mg, 0.44 mmol, 1.0 eq.) and Zn (284 mg, 4.4 mmol, 10 eq) in EtOH/sat.NFLCl (5 mL/2 mL) was stirred at 20 °C for 0.5 hrs. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by Cl 8 column chromatography to afford tert-butyl (R)-6-(l-(l-(4- amino-3-((4-methoxybenzyl)amino)phenyl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (180 mg, 0.3 mmol, 68%) as a yellow oil. LCMS (ESI): m/z = 600 [M+H]+. [00436] STEP G: tert-butyl (R)-6-(l-(l-(3-(4-methoxybenzyl)-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carboxylate
[00437] A solution of tert-butyl (R)-6-(l-(l-(4-amino-3-((4- methoxybenzyl)amino)phenyl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (180 mg, 0.3 mmol, 1.0 eq.) and CDI (100 mg, 0.6 mmol, 2 eq.) in THF (5 mL) was stirred at 50 °C for 2 hrs. After completion, the reaction mixture was diluted with H2O (30 mL), then extracted with EtOAc (25 mL x 3). The organic layers were combined and washed with brine (20 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl (R)-6-(l-(l-(3-(4-methoxybenzyl)-2-oxo- 2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (140 mg, 0.22 mmol, 74%) as a yellow oil. LCMS (ESI): m/z = 626 [M+H]+.
[00438] STEP H: tert-butyl (6R)-6-(l-(l-(3-(4-methoxybenzyl)-l-(l-(4-methoxybenzyl)- 2,6-dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo- 1, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carboxylate
[00439] To a solution of tert-butyl (R)-6-(l-(l-(3-(4-methoxybenzyl)-2-oxo-2,3-dihydro- lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (140 mg, 0.22 mmol, 1.0 eq.) in THF (5 mL) was added LDA (0.11 mL, 0.22 mmol, 1.0 eq.) at 0 °C under N2. The reaction mixture was stirred at 0 °C for 0.5 hrs. To the reaction mixture was added l-(4-methoxybenzyl)-2,6-dioxopiperidin-3- yl trifluoromethanesulfonate ( 172 mg, 0.44 mmol, 2 eq.), The reaction was warmed up to 20 °C and stirred for 1 hr. After completion, the reaction mixture was diluted with H2O (30 mL), extracted with EtOAc (20 mL x 3). The organic layers were combined and washed with brine (50 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert-butyl (6R)- 6-(l-(l-(3-(4-methoxybenzyl)-l-(l-(4-methoxybenzyl)-2,6-dioxopiperidin-3-yl)-2-oxo-2,3- dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (170 mg, 0.20 mmol, 90%) as a yellow solid. LCMS (ESI): m/z = 857 [M+H]+.
[00440] STEP I: 3-(2-oxo-5-(4-(2-oxo-4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H)~ yl)piperidin-l-yl)-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione [00441] A solution of tert-butyl (6R)-6-(l-(l-(3-(4-methoxybenzyl)-l-(l-(4- methoxybenzyl)-2,6-dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5- yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (170 mg, 0.20 mmol, 1.0 eq.) and TfOH (60 mg, 0.40 mmol, 2.0 eq.) in TFA (2 mL) was heated at 60 °C and stirred for 12 hrs. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by C18 column to afford 3-(2-oxo-5-(4-(2-oxo-4- ((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H)-yl)piperidin-l-yl)-2,3-dihydro-lH- benzo[d]imidazol-l-yl)piperidine-2, 6-dione (100 mg, 0.13 mmol, 66%) as a white solid. LCMS (ESI): m/z = 517 [M+H]+.
[00442] STEP J: tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(l-(l-(2,6-dioxopiperidin-3-yl)-2- oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate [00443] To a solution of (3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (22 mg, 66 pmol, 1 eq.) and HATU (30 mg, 79 pmol, 1.2 eq.) in DMF (2 mL) were added 3-(2-oxo-5-(4-(2-oxo-4-((R)-4- azaspiro[2.4]heptan-6-yl)pyridin-l(2H)-yl)piperidin-l-yl)-2,3-dihydro-lH-benzo[d]imidazol- l-yl)piperidine-2, 6-dione (50 mg, 66 pmol, 1 eq.) and DIEA (0.66 mL, 5 eq). The resulting mixture was stirred at room temperature for 1 hr. After completion, the reaction mixture was purified by C18 column to afford tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(l-(l-(2,6- dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2- dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2- a]azocin-6-yl)carbamate (28 mg, 34 pmol, 51%) as a white solid. LCMS (ESI): m/z = 825 (M+H)+.
[00444] STEP K: 3-(5-( 4-( 4-( (R)-4-( 3S, 6S, 10aS)-6-amino-5-oxodecahydropyrrolo[ 1, 2- a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin-l(2H)-yl)piperidin-l-yl)-2- oxo-2, 3-dihydro-lH-benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
[00445] A solution of tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(l-(l-(2,6-dioxopiperidin-3- yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin- 4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamate (28 mg, 34 pmol, 1.0 eq.) in DCM/TFA (3 mL/1 mL) was stirred at 20 °C for 1 hr. After completion, the reaction mixture was concentrated under reduced pressure to give 3- (5-(4-(4-((R)-4-((3S,6S,10aS)-6-amino-5-oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4- azaspiro[2.4]heptan-6-yl)-2-oxopyridin-l(2H)-yl)piperidin-l-yl)-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-l-yl)piperidine-2, 6-dione (24 mg, crude) as a yellow solid, which was used in the next step without further purification. LCMS (ESI): m/z = 725 (M+H)+.
[00446] STEP L: ((2-( ( 3S, 6S, 10aS)-3-( 6R)-6-( !-(!-(! -(2, 6-dioxopiperidin-3-yl)-2-oxo- 2, 3-dihydro-lH-benzo[ d]imidazol-5-yl)piperidin-4-yl) -2-oxo-l, 2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carbonyl)-5-oxodecahydropyrrolo[ 1, 2 -a ]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid
[00447] A solution of 3-(5-(4-(4-((R)-4-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin- l(2H)-yl)piperidin-l-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione (12 mg, 17 pmol, 1.0 eq.), DIEA (13 mg, 99 pmol, 6 eq.) and (difluoro(2- ((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (8 mg, 17 pmol, 1.0 eq.) in DMF (1 mL) was stirred at 25 °C for 0.5 hrs. After completion, the reaction mixture was purified by prep-HPLC to afford ((2-(((3S,6S, 10aS)-3-((6R)-6-(l-(l-(l-(2,6- dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2- dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2- a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 24, 3 mg, 3 pmol, 18%) as a white solid.
[00448] *H NMR (400 MHz, DMSO- 6) 6 11.31-10.93 (m, 2H), 9.02-8.73 (m, 1H), 8.31 (s, 1H), 8.17-7.96 (m, 3H), 7.72-7.45 (m, 1H), 7.18-6.89 (m, 4H), 6.80 (s, 1H), 5.43-5.11 (m, 2H), 5.05-4.83 (m, 1H), 4.62-4.41 (m, 1H), 4.31-4.10 (m, 2H), 3.81-3.74 (m, 2H), 2.96-2.82 (m, 2H), 2.77-2.55 (m, 4H), 2.36-2.14 (m, 4H), 2.10-1.70 (m, 13H), 1.63-1.38 (m, 4H), 1.28- 1.14 (m, 1H), 0.60-0.36 (m, 2H).
[00449] LCMS (ESI): m/z = 1015 [M+H]+.
[00450] STEP M: S,S/(((((2-(((3S, 6S, 10aS)-3-((6R)-6-(l-(l-(l-(2, 6-dioxopiperidin-3-yl)~ 2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2-dihydropyridin-4-yl)~ 4-azaspiro[ 2.4 ]heptane-4-carbonyl)-5-oxodecahydropyrrolo[ 1, 2-a]azocin-6- yl) carbamoyl) benzo [b ]thiophen-5-yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1- diyl)) dibutanethioate
[00451] A solution of 3-(5-(4-(4-((R)-4-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-4-azaspiro[2.4]heptan-6-yl)-2-oxopyridin- l(2H)-yl)piperidin-l-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione (12 mg, 17 pmol, 1.0 eq.), DIEA (13 mg, 100 pmol, 6 eq.) and 4-nitrophenyl 5-((bis(2- (butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (11 mg, 17 pmol, 1 eq.) was stirred at 20 °C for 2 hrs. After completion, the reaction mixture was purified by prep-HPLC to afford S,SE(((((2-(((3S,6S,10aS)-3-((6R)-6-(l-(l-(l-(2,6- dioxopiperidin-3-yl)-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)piperidin-4-yl)-2-oxo-l,2- dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2- a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 25, 1.8 mg, 1 pmol, 9%) as a white solid.
[00452] ’H NMR (400 MHz, DMSO- 6) 5 11.04 (s, 1H), 10.78 (s, 1H), 9.06-8.72 (m, 1H), 8.41-8.28 (m, 1H), 8.22-7.99 (m, 3H), 7.65-7.46 (m, 1H), 7.05-6.47 (m, 5H), 5.38-4.83 (m, 3H), 4.60-4.46 (m, 1H), 4.32-4.05 (m, 6H), 3.83-3.70 (m, 1H), 3.57-3.47 (m, 1H), 3.18-
3.08 (m, 4H), 2.97-2.81 (m, 3H), 2.76-2.58 (m, 3H), 2.36-1.42 (m, 26H), 1.31-1.14 (m, 4H), 0.94-0.74 (m, 6H), 0.59-0.37 (m, 2H).
[00453] LCMS (ESI): m z = 1275 [M+H]+.
[00454] Preparation of S,S -(((((2-(((3S.6S 0aS)-3-((6R)-6-(l-(2-(2-(2-((2-(2.6- dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2- dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2- a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 26) and ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(2-(2-(2-((2-(2,6-dioxopiperidin-3- yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro [2.4] heptane-4-carbonyl)-5-oxodecahydropyrrolo [1,2-a] azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 27)
Figure imgf000145_0001
Figure imgf000146_0001
[00455] STEP A: tert-butyl (R)-6-(l-(2-(2-(2-hydroxyethoxy)ethoxy)ethyl)-2-oxo-l,2- dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carboxylate
[00456] To a solution of tert-butyl (R)-6-(2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (700 mg, 2.4 mmol, 1.0 eq.) in DMF (10 mL) were added 2-(2-(2-chloroethoxy)ethoxy)ethan-l-ol (490 mg, 2.9 mmol, 1.2 eq.), KI (200 mg, 1.2 mmol, 0.5 eq.) and K2CO3 (670 mg, 4.8 mmol, 2.0 eq.). The reaction mixture was stirred at 100 °C for 2 hrs. After completion, the reaction mixture was purified directly by Biotage® Cl 8 column chromatography to afford tert-butyl tert-butyl (R)-6-(l-(2-(2-(2 -hydroxy ethoxy)ethoxy)ethyl)- 2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (400 mg, 0.95 mmol, 39%) as a yellow solid. LCMS (ESI): m/z = 423 [M+H]+.
[00457] STEP B: tert-butyl (R)-6-(l-(2-(2-(2-((methylsulfonyl)oxy)ethoxy)ethoxy)ethyl)-2- oxo-1, 2-dihydropyridin-4-yl)-4-azaspiro[ 2.4 ]heptane-4-carboxylate
[00458] To a solution of tert-butyl (R)-6-(l-(2-(2-(2 -hydroxy ethoxy)ethoxy)ethyl)-2-oxo- l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carboxylate (400 mg, 0.95 mmol, 1.0 eq.) in DCM (5 mL) were added TEA (192 mg, 1.9 mmol, 2.0 eq.) and MsCl (130 mg, 1.14 mmol, 1.2 eq.) at 0 °C. After addition, the resulting mixture was warmed up to room temperature and stirred for 1 hr. After completion, the reaction mixture was diluted with H2O (10 mL), then extracted with EtOAc (15 mL x 3). The organic layers were combined and washed with brine (10 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tert -butyl (R)-6-(l-(2-(2- (2-((methylsulfonyl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (330 mg, 0.66 mmol, 69%) as a colorless oil. LCMS (ESI): m/z = 501 [M+H]+.
[00459] STEP C: tert-butyl (6R)-6-(l-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carboxylate
[00460] To a solution of tert-butyl (R)-6-(l-(2-(2-(2- ((methylsulfonyl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (330 mg, 0.66 mmol, 1.0 eq.) and K2CO3 (324 mg, 1.98 mmol, 3.0 eq.) in DMF (5 mL) was added 3-(4-hydroxy-l-oxoisoindolin-2-yl)piperidine-2,6- dione (174 mg, 0.66 mmol, 1.0 eq.) at room temperature. After addition, the resulting mixture was heated to 60 °C and stirred overnight. After completion, the reaction mixture was diluted with H2O (10 mL), then extracted with EtOAc (15 mL x 3). The organic layers were combined and washed with brine (10 mL), dried over anhydrous Na2SO4, and concentrated under reduced pressure. The residue was purified by flash column chromatography on silica gel to afford tertbutyl (6R)-6-(l-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4- carboxylate (340 mg, 0.51 mmol, 77%) as a white solid. LCMS (ESI): m/z = 665 [M+H]+.
[00461] STEP D: 3-(l-oxo-4-(2-(2-(2-(2-oxo-4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin- l(2H)-yl)ethoxy)ethoxy)ethoxy)isoindolin-2-yl)piperidine-2, 6-dione
[00462] To a solution of tert-butyl tert-butyl (6R)-6-(l-(2-(2-(2-((2-(2,6-dioxopiperidin-3- yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carboxylate (340 mg, 0.51 mmol, 1.0 eq.) in DCM (5 mL) was added TFA (2 mL) and the reaction mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure to get crude 3-(l- oxo-4-(2-(2-(2-(2-oxo-4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H)- yl)ethoxy)ethoxy)ethoxy)isoindolin-2-yl)piperidine-2, 6-dione (400 mg, quant.) as a yellow oil, which was used in next step directly without further purification. LCMS (ESI): m/z = 565 [M+H]+.
[00463] STEP E: tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(2-(2-(2-((2-(2,6-dioxopiperidin-3- yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate [00464] To a solution of (3S,6S,10aS)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (140 mg, 0.43 mmol, 1.2 eq.) and HATU (202 mg, 0.53 mmol, 1.5 eq.) in DMF(2 mL) were added 3-(l-oxo-4-(2-(2-(2-(2-oxo- 4-((R)-4-azaspiro[2.4]heptan-6-yl)pyridin-l(2H)-yl)ethoxy)ethoxy)ethoxy)isoindolin-2- yl)piperidine-2, 6-dione (200 mg, 0.35 mmol, 1.0 eq.) and DIEA (137 mg, 1.06 mmol, 3.0 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was purified by Biotage® Cl 8 column chromatography to get tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (91 mg, 0.11 mmol, 30%) as a white solid. LCMS (ESI): m/z = 873 [M+H]+.
[00465] STEP F: 3-(4-(2-(2-(2-(4-((R)-4-((3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[ 1, 2-a]azocine-3-carbonyl)-4-azaspiro[2.4 ]heptan-6-yl)-2-oxopyridin- l(2H)-yl)ethoxy)ethoxy)ethoxy)-l-oxoisoindolin-2-yl)piperidine-2, 6-dione
[00466] To a solution of tert-butyl ((3S,6S,10aS)-3-((6R)-6-(l-(2-(2-(2-((2-(2,6- dioxopiperi din-3 -yl)-l-oxoi soindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo- 1,2- dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2- a]azocin-6-yl)carbamate (60 mg, 69 pmol, 1.0 eq.) in dry DCM (5 mL) was added TFA (1 mL) at 25 °C. The mixture was stirred at 25 °C for 2 hrs. After completion, the reaction mixture was concentrated under reduced pressure to give 3-{4-[(8-{4-[(6R)-4-{[(3S,6S,10aS)-6- amino-5-oxodecahydropyrrolo[l,2-a]azocin-3-yl]carbonyl}-4-azaspiro[2.4]heptan-6-yl]-2- oxopyridin-l-yl}-3,6-dioxaoct-l-yl)oxy]-l-oxo-2,3-dihydro-lH-isoindol-2- yl}hexahydropyridine-2, 6-dione (50 mg, quant.) as a yellow oil, which was used in next step without further purification. LCMS (ESI): m/z =773.1 [M+H]+.
[00467] STEP G: S,S^(((((2-(((3S,6S,10aS)-3-((6R)-6-(l-(2-(2-(2-((2-(2,6-dioxopiperidin- 3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carbonyl)-5-oxodecahydropyrrolo[ 1, 2 -a ]azocin-6- yl) carbamoyl) benzo [b ]thiophen-5-yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1- diyl)) dibutanethioate
[00468] To a mixture of 3-{4-[(8-{4-[(6R)-4-{[(3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocin-3-yl]carbonyl}-4-azaspiro[2.4]heptan-6-yl]-2-oxopyridin- l-yl}-3,6-dioxaoct-l-yl)oxy]-l-oxo-2,3-dihydro-lH-isoindol-2-yl}hexahydropyridine-2,6- dione (50 mg, 65 pmol, 1.0 eq.) and DIEA (25 mg, 195 pmol, 3.0 eq.) in DMF (3 mL) were added 4-nitrophenyl 5-((bis(2-
(butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (45 mg, 65 pmol, 1.0 eq.) and DMAP (39 mg, 32 pmol, 0.5 eq.). The mixture was stirred at 25 °C for 30 min. After completion, the reaction mixture was purified by prep-HPLC to give S,SE(((((2- (((3S,6S,10aS)-3-((6R)-6-(l-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4- yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate (Compound 26, 31.3 mg, 24 pmol, 37%) as a white solid.
[00469] ’H NMR (400 MHz, DMSO- 6) 5 10.96 (s, 1H), 8.94 (d, J= 7.1 Hz, 1H), 8.34 (s, 1H), 8.20 (d, J= 8.4 Hz, 1H), 8.14 (s, 1H), 7.58 (d, J= 8.5 Hz, 1H), 7.53-7.42 (m, 2H), 7.35- 7.29 (m, 1H), 7.24-7.16 (m, 1H), 6.30 (s, 1H), 6.20-6.10 (m, 1H), 5.15-5.05 (m, 1H), 5.00-4.89 (m, 1H), 4.52-4.39 (m, 1H), 4.37-4.29 (m, 1H), 4.27-4.10 (m, 8H), 4.05-3.90 (m, 3H), 3.75- 3.63 (m, 3H), 3.62-3.56 (m, 2H), 3.49 (s, 4H), 3.16-3.09 (m, 4H), 2.96-2.84 (m, 1H), 2.61-2.53 (m, 4H), 2.46-2.15 (m, 3H), 2.12-1.59 (m, 14H), 1.58-1.46 (m, 7H), 0.85 (t, J = 7.4 Hz, 6H), 0.51-0.37 (m, 2H).
[00470] LCMS (ESI): m/z = 1324.5 [M+H]+.
[00471] STEP H: ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l- oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo-l,2-dihydropyridin-4-yl)-4- azaspiro[ 2.4 ]heptane-4-carbonyl)-5-oxodecahydropyrrolo[ 1, 2 -a ]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid
[00472] To a mixture of 3-{4-[(8-{4-[(6R)-4-{[(3S,6S,10aS)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocin-3-yl]carbonyl}-4-azaspiro[2.4]heptan-6-yl]-2-oxopyridin- l-yl}-3,6-dioxaoct-l-yl)oxy]-l-oxo-2,3-dihydro-lH-isoindol-2-yl}hexahydropyridine-2,6- dione (50 mg, 65 pmol, 1.0 eq.) and DIEA (25 mg, 195 pmol, 3.0 eq.) in DMF (3 mL) were added (difluoro(2-((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (31 mg, 65 pmol, 1.0 eq.). The mixture was stirred at 25 °C for 30 min. After completion, the reaction mixture was purified by prep-HPLC to give ((2-(((3S,6S,10aS)-3-((6R)-6-(l-(2- (2-(2-((2-(2,6-dioxopiperidin-3-yl)-l-oxoisoindolin-4-yl)oxy)ethoxy)ethoxy)ethyl)-2-oxo- l,2-dihydropyridin-4-yl)-4-azaspiro[2.4]heptane-4-carbonyl)-5-oxodecahydropyrrolo[l,2- a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid
(Compound 27, 16.2 mg, 15 pmol, 23%) as a white solid.
[00473] ’H NMR (400 MHz, DMSO- 6) 5 10.96 (s, 1H), 8.87 (d, J= 7.2 Hz, 1H), 8.32 (s, 1H), 8.13 (d, J= 8.5 Hz, 1H), 8.07 (s, 1H), 7.58 (d, J= 8.6 Hz, 1H), 7.53-7.49 (m, 1H), 7.49-
7.43 (m, 1H), 7.33-7.29 (m, 1H), 7.24-7.18 (m, 1H), 6.32-6.28 (m, 1H), 6.17-6.10 (m, 1H), 5.13-5.07 (m, 1H), 4.98-4.92 (m, 1H), 4.48-4.42 (m, 1H), 4.36-4.30 (m, 1H), 4.26-4.19 (m, 2H), 4.19-4.15 (m, 2H), 4.07-3.91 (m, 4H), 3.71-3.63 (m, 3H), 3.61-3.57 (m, 2H), 3.48-3.22 (m, 3H), 2.95-2.84 (m, 1H), 2.63-2.53 (m, 1H), 2.47-2.37 (m, 1H), 2.28-2.19 (m, 1H), 2.05-
1.44 (m, 17H), 0.49-0.39 (m, 2H).
[00474] LCMS (ESI): m/z = 1063.2 [M+H]+.
[00475] Preparation of ((2-(((3S,6S,9aS)-3-(3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro- lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphonic acid (Compound 28) and S,SB(((((2-(((3S,6S,9aS)-3-(3-(4- (4-(2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l- carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen- 5-yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l-diyl)) dibutanethioate
(Compound 29)
Figure imgf000151_0001
Figure imgf000152_0001
[00476] STEP A: tert-butyl 3-(4-(piperazin-l-yl)pyridin-3-yl)azetidine-l -carboxylate
[00477] To a solution of tert-butyl 3-(4-fluoropyridin-3-yl)azetidine-l -carboxylate (1.0 g, 3.97 mmol, 1.0 eq.) in DMF (10 mL ) were added piperazine (0.68 g, 7.94 mmol, 2.0 eq.) and CS2CO3 (2.58 g, 7.94 mmol, 2.0 eq.). The resulting mixture was stirred at 110 °C overnight . After completion, The residue was purified by Biotage® Cl 8 column chromatography to get tert-butyl 3 -(4-(piperazin-l -yl)pyri din-3 -yl)azeti dine- 1- carboxylate (0.9 g, 2.82 mmol, 71%) as a white solid. LCMS (ESI): m/z = 319 [M+H]+.
[00478] STEP B: tert-butyl 3-(4-(4-(2-chloroacetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l- carboxylate [00479] To a solution of tert-butyl 3 -(4-(piperazin-l-yl)pyri din-3 -yl)azeti dine- 1- carb oxy late (0.9 g, 2.82 mmol, 1.0 eq.) in DCM (20 mL) was added 2 -chloroacetyl chloride(0.35 g, 3.1 mmol, 1.1 eq.) and the resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by Biotage® Cl 8 column chromatography to get tert-butyl 3 -(4-(piperazin-l-yl)pyri din-3 -yl)azeti dine- 1 -carboxylate (0.5 g, 1.26 mmol, 45%) as a white solid. LCMS (ESI): m/z = 395 [M+H]+.
[00480] STEP C: tert-butyl 3-(4-(4-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l -carboxylate
[00481] To a solution of tert-butyl 3 -(4-(piperazin-l -yl)pyri din-3 -yl)azeti dine- 1- carboxylate (0.5 g, 1.26 mmol, 1 eq) in ACN (5 mL) were added 4-(2,6-bis(benzyloxy)pyridin- 3-yl)phenol (483 mg, 1.26 mmol, 1.0 eq.) and CS2CO3 (822 mg, 2.52 mmol, 2 eq.). The resulting mixture was stirred at 60 °C for 6 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by Biotage® Cl 8 column chromatography to get tert-butyl 3-(4-(4-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carboxylate(450mg, 0.62 mmol, 49%) as a white solid. LCMS (ESI): m/z = 742 [M+H]+.
[00482] STEP D: tert-butyl 3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l -carboxylate
[00483] To a solution of tert-butyl 3-(4-(4-(2-(4-(2,6-bis(benzyloxy)pyridin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carboxylate(450 mg, 0.62 mmol, 1.0 eq.) in MeOH (20 mL) was added Pd/C (20 mg) under nitrogen. The suspension was degassed under vacuum and purged with H2 several times. The resulting mixture was stirred at room temperature for 3 hrs. After completion, the suspension was filtered through a pad of Celite®, the filter cake was washed with MeOH (10 mL). The combined filtrates were concentrated to dryness to give tert-butyl 3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyri din-3 -yl)azeti dine- 1 -carboxylate (200 mg, 0.35 mmol, 58%) as a white solid. LCMS (ESI): m/z = 564 [M+H]+.
[00484] STEP E: 3-(4-(2-(4-(3-(azetidm-3-yl)pyridin-4-yl)piperazin-l-yl)-2- oxoethoxy)phenyl)piperidine-2, 6-dione
[00485] To a solution of tert-butyl 3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyri din-3 -yl)azeti dine- 1 -carboxylate (200 mg, 0.35 mmol, 1.0 eq.) in DCM (10 mL) was added TFA (1 mL) and the reaction mixture was stirred at room temperature for 4 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure to get crude 3-(4-(2-(4-(3-(azetidin-3-yl)pyridin-4-yl)piperazin-l-yl)-2- oxoethoxy)phenyl)piperidine-2, 6-dione (180 mg, quant.) as a white solid, which was used in next step directly without further purification. LCMS (ESI): m/z = 464 [M+H]+.
[00486] STEP F: tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamate
[00487] To a solution of (3S,6S,9aS)-6-((tert-butoxycarbonyl)amino)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carboxylic acid (60 mg, 0.19 mmol,l eq.) and HATU (96 mg, 0.25 mmol, 1.3 eq.) in DMF (2 mL) were added 3-(4-(2-(4-(3-(azetidin-3-yl)pyridin-4- yl)piperazin-l-yl)-2-oxoethoxy)phenyl)piperidine-2, 6-dione (90 mg, 0.19 mmol, 1.0 eq.) and DIEA (74 mg, 0.57 mmol, 3 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was purified by Biotage® Cl 8 column chromatography to get tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamate(40 mg, 58 pmol, 28%) as a white solid. LCMS (ESI): m/z = 758 [M+H]+.
[00488] STEP G: 3-(4-(2-(4-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperazin-l-yl)-2- oxoethoxy)phenyl)piperidine-2, 6-dione
[00489] To a solution of tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamate (40 mg, 58 umol, 1.0 eq.) in DCM (5 mL) was added TFA (1 mL) and the reaction mixture was stirred at room temperature for 4 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure to get crude 3-(4-(2-(4-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2-a]azepine-3- carbonyl)azetidin-3-yl)pyridin-4-yl)piperazin-l-yl)-2-oxoethoxy)phenyl)piperidine-2, 6-dione (40 mg, quant.) as a white solid, which was used in next step directly without further purification. LCMS (ESI): m/z = 658 [M+H]+.
[00490] STEP H: ( ( 2-( ( ( 3S, 6S, 9aS)-3-(3-( 4-( 4-(2-( 4-(2, 6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid [00491] To a solution of 3-(4-(2-(4-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperazin-l-yl)-2- oxoethoxy)phenyl)piperidine-2,6-dione(20 mg, 30 pmol, 1.0 eq.) in DMF (1 mL) were added (difluoro(2-((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid ( 15 mg, 30 pmol, 1.0 eq.) and TEA (9 mg, 90 pmol, 3.0 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was purified by prep-HPLC to get ((2-(((3S,6S,9aS)-3-(3-(4-(4-(2-(4-(2,6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 28, 8 mg, 8.4 pmol, 28%) as a white solid.
[00492] ’H NMR (400 MHz, DMSO- 6) 5 10.79 (s, 1H), 8.83-8.68 (m, 1H), 8.61-8.34 (m, 2H), 8.32-8.21 (m, 1H), 8.17-8.01 (m, 2H), 7.64-7.54 (m, 1H), 7.35-7.22 (m, 1H), 7.12 (t, J= 7.7 Hz, 2H), 6.89 (t, J= 8.1 Hz, 2H), 4.93-4.78 (m, 3H), 4.72-4.61 (m, 2H), 4.49-4.29 (m, 5H), 4.22-4.14 (m, 2H), 4.01-3.98 (m, 2H), 3.80-3.76 (m, 2H), 3.67-3.62 (m, 4H), 3.45-3.40 (m, 2H), 2.71-2.62 (m, 1H), 2.27-2.11 (m, 2H), 2.06-1.92 (m, 3H), 1.92-1.58 (m, 7H).
[00493] LCMS (ESI): m/z = 948.5 [M+H]+.
[00494] STEP I: S,S^ ((((2-(((3S, 6S,9aS)-3-(3-(4-(4-(2-(4-(2, 6-dioxopiperidin-3- yl)phenoxy)acetyl)piperazin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH- pyrrolo[ 1, 2-a]azepin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)difluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) dibutanethioate [00495] To a solution of 3-(4-(2-(4-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperazin-l-yl)-2- oxoethoxy)phenyl)piperidine-2, 6-dione (20 mg, 30 pmol, 1.0 eq.) in DMF (1 mL) were added 4-nitrophenyl 5-((bis(2- (butyrylthio)ethoxy)phosphoryl)difluoromethyl)benzo[b]thiophene-2-carboxylate (21 mg, 30 pmol, 1.0 eq.) and TEA (9 mg, 90 pmol, 3.0 eq.). The resulting mixture was stirred at room temperature for 2 hrs under N2. After completion, the reaction mixture was concentrated under reduced pressure. The residue was purified by prep-HPLC to get S,SE(((((2- (((3S,6S,9aS)-3-(3-(4-(4-(2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)acetyl)piperazin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2,l- diyl)) dibutanethioate (Compound 29, 7 mg, 6 pmol, 33% ) as a white solid. [00496] ’H NMR (400 MHz, DMSO- 6) 5 10.79 (s, 1H), 8.88-8.74 (m, 1H), 8.61-8.41 (m, 2H), 8.31 (d, J= 14.7 Hz, 1H), 8.24-8.11 (m, 2H), 7.59 (d, J= 8.7 Hz, 1H), 7.33 (t, J= 7.0 Hz, 1H), 7.12 (t, J= 7.9 Hz, 2H), 6.90 (t, J= 7.9 Hz, 2H), 4.90-4.62 (m, 4H), 4.48-4.29 (m, 3H), 4.24-4.10 (m, 5H), 4.04-3.97 (m, 2H), 3.84-3.59 (m, 10H), 3.14 (t, J= 6.1 Hz, 4H), 2.71-2.61 (m, 1H), 2.54 (t, J= 7.3 Hz, 4H), 2.26-2.11 (m, 2H), 2.05-1.93 (m, 3H), 1.91-1.64 (m, 7H), 1.59-1.51 (m, 4H), 0.86 (t, J= 7.5 Hz, 6H).
[00497] LCMS (ESI): m/z = 1208.4 [M+H]+.
[00498] Preparation of ((2-(((3S,6S,10aR)-3-(3-(3-(2-(2-(2-((2-(2,6-dioxopiperidin-3- yl)-l,3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 30)
Figure imgf000157_0001
Figure imgf000158_0001
[00499] Step 1: Preparation of tert-butyl 3-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanoate
[00500] To a solution of 2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3-dihydro-lH- isoindol-4-yl]oxy (acetic acid (0.1 g, 0.3 mmol, 1 eq) in dimethylformamide (1.0 mL) was added HATU (0.17 g, 0.45 mmol, 1.5 eq) and ethylbis(propan-2-yl)amine (0.12 g, 0.9 mmol, 3.0 eq), the mixture was stirred at 25 °C for 15 min, then a solution of tert-butyl 3-[2-(2- aminoethoxy)ethoxy]propanoate (70 mg, 0.3 mmol, 1 eq) and ethylbis(propan-2-yl)amine (0.12 g, 0.9 mmol, 3.0 eq) in dimethylformamide (1.0 mL) was added to the mixture, the mixture was stirred at 25 °C for 30 min to give yellow solution. The residue was diluted with water (5 mL) and extracted with ethyl acetate (5 mL x 2), the combined organic layers were washed with saturated brine (5 mL x 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography to give tert-butyl 3-{2-[2-(2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3-dihydro-lH-isoindol-4- yl]oxy}acetamido)ethoxy]ethoxy}propanoate (0.3 g, 0.5 mmol, 18% yield) was obtained as a yellow oil. LCMS (ESI) m/z = 548.2
[00501] Step 2: Preparation of 3-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanoic acid
[00502] To a solution of tert-butyl 3-{2-[2-(2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3- dihydro-lH-isoindol-4-yl]oxy}acetamido)ethoxy]ethoxy}propanoate (0.3 g, 0.5 mmol, 1 eq) in methylene chloride (3 mL) was added trifluoroacetic acid (1 mL), the mixture was stirred at 25 °C for 15 minutes to give yellow solution. The reaction mixture was concentrated under reduced pressure to give 3-{2-[2-(2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3-dihydro-lH- isoindol-4-yl]oxy}acetamido)ethoxy]ethoxy}propanoic acid (0.3 g, crude) as a yellow oil. LCMS (ESI) m/z = 448.2
[00503] Step 3: Preparation of tert-butyl 3-(3-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanamido)-3-(pyridin-2-yl)azetidine- 1-carboxylate
[00504] To a solution of 3-{2-[2-(2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3-dihydro- lH-isoindol-4-yl]oxy}acetamido)ethoxy]ethoxy}propanoic acid (0.15 g, 0.31 mmol, 1 eq) in dimethylformamide (1.5 mL) was added HATU (0.17 g, 0.46 mmol, 1.5 eq) and N,N- diisopropylethylamine (0.12 g, 0.92 mmol, 3.0 eq), the mixture was stirred at 25 °C for 5 min, then a solution of tert-butyl 3-amino-3-(pyridin-2-yl)azetidine-l -carboxylate (76 mg, 0.31 mmol, 1 eq) and N,N-diisopropylethylamine (0.12 g, 0.92 mmol, 3.0 eq) in dimethylformamide (1.0 mL) was added to the mixture, the mixture was stirred at 25 °C for 30 min to give yellow solution. The residue was purified by reversed phase (TFA condition) to give tert-butyl 3-(3- {2-[2-(2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3-dihydro-lH-isoindol-4- yl]oxy }acetamido)ethoxy]ethoxy }propanamido)-3- (pyri din-2 -yl)azeti dine- 1 -carboxylate (80 mg, 0.11 mmol, 36 % yield) was obtained as a yellow oil. LCMS (ESI) m/z = 723.3
[00505] Step 4: Preparation of 3-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)-N-(3-(pyridin-2-yl)azetidin-3- yl)propanamide
[00506] To a solution of tert-butyl 3-(3-{2-[2-(2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo- 2,3-dihydro-lH-isoindol-4-yl]oxy}acetamido)ethoxy]ethoxy}propanamido)-3- (pyridin-2- yl)azetidine-l -carboxylate (80 mg, 0.11 mmol, 1 eq) in methylene chloride (1.0 mL) was added trifluoroacetic acid (0.3 mL), the mixture was stirred at 25 °C for 15 min to give yellow solution. The reaction mixture was concentrated under reduced pressure to give 3-{2-[2-(2-{[2- (2,6-dioxopiperidin-3 -yl)- 1 ,3 -dioxo-2,3 -dihydro- 1 H-isoindol -4- yl]oxy}acetamido)ethoxy]ethoxy}-N-[3-(pyridin-2-yl)azetidin-3- yl]propanamide (80 mg, crude) was obtained as a yellow oil. LCMS (ESI) m/z = 623.3
[00507] Step 5: Preparation of tert-butyl ((3S, 6S, J0aR)-3-(3-(3-(2-(2-(2-((2-(2, 6- dioxopiperidin-3-yl)-l, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanamido)-3- (pyridin-2-yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo [ 1 ,2-a]azocin-6-yl)carbamate [00508] To a solution of 3-{2-[2-(2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3-dihydro- lH-isoindol-4-yl]oxy}acetamido)ethoxy]ethoxy}-N-[3-(pyridin-2-yl)azetidin-3- yl]propanamide (70 mg, 0.11 mmol, 1 eq) in dimethylformamide (1.0 mL) was added N,N- diisopropylethylamine (43 mg, 0.34 mmol, 3.0 eq), the mixture was stirred at 25 °C for 15 min, then a solution of 3-{2-[2-(2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3-dihydro-lH- isoindol-4- yl]oxy}acetamido)ethoxy]ethoxy}-N-[3-(pyridin-2-yl)azetidin-3-yl]propanamide (70 mg, 0.11 mmol, 1 eq), l-[(dimethylamino)(dimethyliminiumyl)methyl]-3- oxo- lH,2H,3H-3X5-[l,2,3]triazolo[5,4-b]pyridin-3-ylium-2-ide; hexafluoro-X5-phosphanuide (64 mg, 0.17 mmol, 1.5 eq) and N,N-diisopropylethylamine (43 mg, 0.34 mmol, 3.0 eq) in dimethylformamide (1.0 mL) was added to the mixture, the mixture was stirred at 25 °C for 30 min to give yellow solution. The residue was purified by reversed phase (TFA) to give tert-butyl N-[(3S,6S,10aR)-3-[3-(3-{2-[2-(2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3- dihydro-lH-isoindol-4- yl]oxy}acetamido)ethoxy]ethoxy}propanamido)-3-(pyridin-2- yl)azetidine-l-carbonyl]-5-oxo-decahydropyrrolo[l,2-a]azocin-6-yl]carbamate (50 mg, 0.054 mmol, 48% yield) was obtained as a yellow oil. LCMS (ESI) m/z = 931.4
[00509] Step 6: Preparation of N-(1-((3S,6S, 10aR)-6-amino-5-oxodecahydropyrrolo[ 1 ,2- a ]azocine-3-carbonyl)-3-(pyridin-2-yl)azetidin-3-yl) -3-( 2-(2-(2-( ( 2-( 2, 6-dioxopiperidin-3-yl)~
1.3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanamide
[00510] To a solution of tert-butyl N-[(3S,6S,10aR)-3-[3-(3-{2-[2-(2-{[2-(2,6- dioxopiperi din-3 -yl)- 1 , 3 -dioxo-2, 3 -dihydro- 1 H-isoindol -4- yl]oxy}acetamido)ethoxy]ethoxy}propanamido)-3-(pyridin-2-yl)azetidine-l-carbonyl]-5- oxo-decahydropyrrolo[l,2-a]azocin-6-yl]carbamate (45 mg, 48 pmol, 1 eq) in methylene chloride (0.9 mL) was added trifluoroacetic acid (0.3 mL), the mixture was stirred at 25 °C for 15 min to give yellow solution. The reaction mixture was concentrated under reduced pressure to give N-{l-[(3S,6S,10aR)-6-amino-5-oxo-decahydropyrrolo[l,2-a]azocine-3- carbonyl]-3-(pyridin-2-yl)azetidin-3-yl}-3-{2-[2-(2-{[2-(2,6-dioxopiperidin-3- yl)-l,3-dioxo-
2.3-dihydro-lH-isoindol-4-yl]oxy}acetamido)ethoxy]ethoxy}propanamide (45 mg, crude) was obtained as a yellow oil. LCMS (ESI) m/z = 831.4
[00511] Step 7: Preparation of ((2-(((3S,6S,10aR)-3-(3-(3-(2-(2-(2-((2-(2,6- dioxopiperidin-3-yl)-l, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)propanamido)-3- (pyridin-2-yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)difluoromethyl)phosphonic acid [00512] To a solution ofN-{ l-[(3S,6S,10aR)-6-amino-5-oxo-decahydropyrrolo[l,2- a]azocine-3-carbonyl]-3-(pyridin-2-yl)azetidin-3-yl}-3-{2-[2-(2-{[2-(2,6- di oxopiperi din-3 - yl)- 1 , 3 -di oxo-2, 3 -dihydro- 1 H-i soindol -4-yl] oxy } acetamido)ethoxy] ethoxy } propanamide (40 mg, 48 pmol, 1 eq) and [difluoro({2-[(4- nitrophenoxy)carbonyl]-l-benzothi ophen-5 - yl})methyl]phosphonic acid (21 mg, 48 pmol, 1 eq) in methylene chloride (1.0 mL) was added 1H-1,2,3- benzotriazol-3-ium-l-olate amine (11 mg, 72 pmol, 1.5 eq) and N,N- diisopropylethylamine (19 mg, 0.14 mmol, 3.0 eq), the mixture was stirred at 25 °C for 15 min to give yellow solution. The residue was purified by prep-HPLC(column: Phenomenex Luna C18 150 x 25 mm xio urn, mobile phase: water (0.225% FA) - ACN; B%: 30% - 45%, 8min) then lyophilization to give [(2-{[(3S,6S,10aR)-3-[3-(3-{2-[2-(2-{[2-(2,6- dioxopiperi din-3 -yl)- 1 , 3 -di oxo-2, 3 -dihydro- 1 H-isoindol -4- yl]oxy}acetamido)ethoxy]ethoxy}propanamido)-3-(pyridin-2-yl)azetidine-l-carbonyl]-5- oxo-decahydropyrrolo[ 1 ,2-a]azocin-6-yl]carbamoyl } - 1 - benzothiophen-5- yl)difhioromethyl]phosphonic acid (Compound 30, 21.3 mg, 19 pmol, 40% yield) was obtained as a white solid. LCMS (ESI) m/z = 1121.3
[00513] 1H NMR (400 MHz, DMSO-t/6) 8 11.11 (s, 1H), 9.18 - 9.06 (m, 1H), 8.87 (d, J = 7.2 Hz, 1H), 8.65 - 8.56 (m, 1H), 8.32 (s, 1H), 8.14 (d, J = 8.4 Hz, 1H), 8.07 (s, 1H), 8.03 -
7.95 (m, 1H), 7.83 - 7.70 (m, 2H), 7.58 (d, J = 8.8 Hz, 1H), 7.51 - 7.43 (m, 1H), 7.40 (d, J =
4.4 Hz, 1H), 7.38 - 7.35 (m, 1H), 5.15 - 5.07 (m, 1H), 4.97 - 4.90 (m, 1H), 4.77 (d, J = 5.2 Hz, 2H), 4.61 - 4.53 (m, 2H), 4.39 - 4.22 (m, 4H), 4.18 - 4.16 (m, 1H), 4.10 - 4.01 (m, 1H),
3.66 - 3.59 (m, 2H), 3.53 - 3.49 (m, 3H), 3.48 - 3.41 (m, 2H), 3.33 - 3.25 (m, 2H), 2.94 - 2.82
(m, 1H), 2.68 - 2.52 (m, 5H), 2.47 - 2.42 (m, 1H), 2.23 - 2.11 (m, 2H), 2.07 - 1.97 (m, 2H),
1.95 - 1.77 (m, 6H), 1.69 - 1.45 (m, 3H).
[00514] Preparation of (difluoro(2-(((3S,6S,10aR)-3-(3-(2-(2-(2-(((S)-l-((2S,4R)-4- hydroxy-2-(((S)-l-(4-(4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3- dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (Compound 31)
Figure imgf000162_0001
Figure imgf000163_0001
[00515] Step 1 : Preparation of 2-( 2-(2-((l -(tert-butoxycarbonyl) -3-(pyridin-2-yl)azetidin-
3-yl)amino)-2-oxoethoxy)ethoxy)acetic acid
[00516] To a solution of 2,2E(ethane-l,2-diylbis(oxy))diacetic acid (0.30 g, 1.7 mmol, 1.0 eq) in DCM (3.0 mL) was added HATU (0.32 g, 0.84 mmol, 0.50 eq) and DIEA (0.43 g, 3.4 mmol, 2.0 eq), then tert-butyl 3 -amino-3-(pyri din-2 -yl)azeti dine- 1 -carboxylate (0.21 g, 0.84 mol, 0.50 eq) was added, the mixture was stirred at 25 °C for 1 hour to give a yellow solution. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by flash silica gel chromatography to give 2-(2-(2-((l-(tert-butoxycarbonyl)-3- (pyridin-2-yl)azetidin-3-yl)amino)-2-oxoethoxy)ethoxy)acetic acid (0.20 g, 26% yield) as a yellow oil. LCMS (ESI) m/z =410.1. *H NMR (400 MHz, METHANOL-^) 5 8.57 - 8.63 (m, 1H) 7.98 (d, J=8.0 Hz, 1H) 7.66 (d, J=8.00 Hz, 1H) 7.41 - 7.49 (m, 1H) 4.28 - 4.38 (m, 4H) 4.14 (m, 2H) 4.08 (s, 2H) 3.76 (s, 4H) 1.44 (s, 9H)
[00517] Step 2: Preparation of tert-butyl 3-(2-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l- ( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine-l-carboxylate
[00518] To a solution of 2-(2-(2-((l-(tert-butoxycarbonyl)-3-(pyri din-2 -yl)azeti din-3 - yl)amino)-2-oxoethoxy)ethoxy)acetic acid (0.20 g, 0.49 mmol, 1.0 eq) in DCM (5.0 mL) was added HATU (0.23 g, 0.59 mmol, 1.2 eq) and DIEA (0.13 g, 0.98 mmol, 2.0 eq), then (2S,4R)-
1-((S)-2-amino-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4-(4-methylthiazol-5- yl)phenyl)ethyl)pyrrolidine-2-carboxamide (0.22 g, 0.49 mmol, 1.0 eq) was added. The mixture was stirred at 25 °C for 1 hour to give a yellow solution. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by reversed phase (column:300 g ; mobile phase: [water (TFA)-ACN]; B%: 0% - 30%, 30 min). The solution was lyophilization to give tert-butyl 3-(2-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l- (4-(4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-
2-yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine-l -carboxylate (0.16 g, 40% yield) as a white oil. LCMS (ESI) m/z =836.4. 1 H NMR (400 MHz, METHANOL-d4) 8 9.03 (s, 1H) 8.61 - 8.66 (m, 1H) 7.95 - 8.05 (m, 1H) 7.64 - 7.74 (m, 1H) 7.43 (m, 5H) 4.70 (s, 1H) 4.55 - 4.60 (m, 1H) 4.36 - 4.45 (m, 5H) 4.11 - 4.16 (m, 3H) 4.09 (s, 1H) 3.98 (s, 1H) 3.82 (s, 5H) 3.75 (m, 1H) 2.49 (s, 3H) 2.15 - 2.25 (m, 1H) 1.89 - 2.00 (m, 1H) 1.48 (s, 9H) 1.47 (s, 3H) 1.05 (s, 9H)
[00519] Step 3: Preparation of (2S,4R)-l-((S)-3,3-dimethyl-2-(2-(2-(2-oxo-2-((3-(pyridin- 2-yl)azetidin-3-yl)amino)ethoxy)ethoxy)acetamido)butanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide
[00520] To a solution of tert-butyl 3-(2-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine-l -carboxylate (0.15 g, 0.16 mmol, 1.0 eq) in DCM (1.0 mL) was added TFA (0.30 mL) . Then the mixture was stirred at 25 °C for 1 hour to give a yellow solution. The reaction mixture was concentrated under reduced pressure to give (2S,4R)-l-((S)-3,3-dimethyl-2-(2-(2-(2-oxo-2-((3-(pyridin-2- yl)azetidin-3-yl)amino)ethoxy)ethoxy)acetamido)butanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (0.15 g, crude) as a yellow oil. LCMS (ESI) m/z = 736.4.
[00521] Step 4: Preparation of tert-butyl ((3S,6S,10aR)-3-(3-(2-(2-(2-(((S)-l-((2S,4R)-4- hydroxy-2-( ( (S)-l-( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3- dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine- l-carbonyl)-5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamate
[00522] To a solution of (3S,6S,10aR)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (50 mg, 0.15 mmol, 1.0 eq) in DCM (1.0 mL) was added HATU(70 mg, 0.18 mmol, 1.2 eq), a solution of (2S,4R)-l-((S)-3,3- dimethyl-2-(2-(2-(2-oxo-2-((3-(pyridin-2-yl)azetidin-3- yl)amino)ethoxy)ethoxy)acetamido)butanoyl)-4-hydroxy-N-((S)-l-(4-(4-methylthiazol-5- yl)phenyl)ethyl)pyrrolidine-2-carboxamide (0.11 g, 0.15 mmol, 1.0 eq), DIEA (99 mg, 0.77 mmol, 5.0 eq) in DCM (1.0 mL) was added to the mixture. Then the mixture was stirred at 25 °C for 1 hour to give a yellow solution . The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by flash silica gel chromatography to give tert-butyl ((3S,6S,10aR)-3-(3-(2-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2- (((S)-l-(4-(4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l- oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3 -(pyri din-2 -yl)azeti dine- 1- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (50 mg, 31% yield) as a white oil. LCMS (ESI) m/z = 522.9.
[00523] Step 5: Preparation of (2S,4R)-l-((S)-2-(2-(2-(2-((l-((3S,6S,10aR)-6-amino-5- oxodecahydropyrrolo[ 1, 2 -a ]azocine-3-carbonyl) -3-(pyridin-2-yl)azetidin-3-yl)amino)-2- oxoethoxy)ethoxy)acetamido)-3, 3-dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4-(4-methylthiazol- 5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide
[00524] To a solution of tert-butyl ((3S,6S,10aR)-3-(3-(2-(2-(2-(((S)-l-((2S,4R)-4- hydroxy-2-(((S)-l-(4-(4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3- dimethyl-l-oxobutan -2 -yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3-(pyri din-2 -yl)azeti dine- l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (50 mg, 48 pmol, 1.0 eq) in DCM (1.0 mL) was added TFA (1.0 mL) . Then the mixture was stirred at 25 °C for 1 hour to give yellow solution. The reaction mixture was concentrated under reduced pressure to give (2S,4R)-l-((S)-2-(2-(2-(2-((l-((3S,6S,10aR)-6-amino-5-oxodecahydropyrrolo[l,2-a]azocine-
3-carbonyl)-3-(pyridin-2-yl)azetidin-3-yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3,3- dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4-(4-methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2- carboxamide (50.0 mg, crude) as a yellow oil. LCMS (ESI) m/z =944.6.
[00525] Step 6: Preparation of (difluoro(2-(((3S,6S,10aR)-3-(3-(2-(2-(2-(((S)-l-((2S,4R)~
4-hydroxy-2-( ( (S)-l-( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3- dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine- l-carbonyl)-5-oxodecahydropyrrolo[ 1, 2-a]azocin-6-yl)carbamoyl)benzo[b ]thiophen-5- yl)methyl)phosphonic acid
[00526] To a solution of (difluoro(2-((4-nitrophenoxy)carbonyl)benzo[b]thiophen-5- yl)methyl)phosphonic acid (20 mg, 46 pmol, 1.0 eq) in DCM (1.0 mL) was added HOBt (8.5 mg, 55 pmol, 1.2 eq), Then a solution of (2S,4R)-l-((S)-2-(2-(2-(2-((l-((3S,6S,10aR)-6- amino-5-oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-3-(pyridin-2-yl)azetidin-3- yl)amino)-2-oxoethoxy)ethoxy)acetamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (44 mg, 47 pmol, 1.0 eq), DIEA (30 mg, 0.23 mmol, 5.0 eq) in DCM (1.0 mL) was added to the mixture. The reaction solution was stirred at 25 °C for 1 hour to give a yellow solution. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep- HPLC (column: Wei ch Xtimate Cl 8 150 x 25 mm x 5 um; mobile phase: water (NH3H2O)- ACN; B%: 5% - 35%, 8 min). The solution was lyophilization to give (difluoro(2- (((3S,6S,10aR)-3-(3-(2-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4-methylthiazol-5- yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)amino)-2- oxoethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine-l-carbonyl)-5- oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)methyl)phosphonic acid (Compound 31, 4.6 mg, 8.0% yield) as a white solid. LCMS (ESI) m/z =617.9. 'H NMR (400 MHz, METHANOL-d4) 8 8.87 8.93 (m, 1H) 8.53 (m, 1H) 8.07 8.20 (m, 2H) 7.90 (m, 1H) 7.76 7.83 (m, 1H) 7.66 - 7.75 (m, 1H) 7.46 7.52 (m, 1H) 7.32 7.43 (m, 5H) 5.00 5.06 (m, 1H) 4.69 (s, 2H) 4.47 4.60 (m, 4H) 4.42 (s, 3H) 4.03 4.16 (m, 4H) 3.67 3.85 (m, 7H) 2.41 2.49 (m, 3H) 2.16 2.38 (m, 4H) 1.91 2.11 (m, 8H) 1.63 1.74 (m, 2H) 1.36 1.38 (m, 3H) 1.02 (s, 9H).
[00527] Preparation of ((2-(((3S,6S,10aR)-3-(3-(2-(2-(2-(2-((2-(2,6-dioxopiperidin-3- yl)-l,3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 32)
Figure imgf000167_0001
[00528] Step 1: Preparation of tert-butyl 2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetate
[00529] To a solution of 2-{[2-(2,6-dioxopiperidin-3-yl)-l,3-dioxo-2,3-dihydro-lH- isoindol-4-yl]oxy (acetic acid (0.3 g, 0.90 mmol), HATU (0.52 g, 1.4 mmol) in DMF (5 mL) was added ethylbi s(propan-2-yl)amine (0.35 g, 2.7 mmol), then tert-butyl 2-[2-(2- aminoethoxy)ethoxy] acetate (0.24 g, 1.1 mmol) was added in it and stirred at 25 °C for 2 hours to give a yellow solution. The reaction mixture was diluted with water (20 mL) and extracted with ethyl acetate (20 mL x 2), the combined organic layers were washed with saturated brine (20 mL x 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a tert-butyl 2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindolin-4- yl)oxy)acetamido)ethoxy)ethoxy)acetate (0.60 g, crude) as a brown oil. LCMS (ESI) m/z = 534.1.
[00530] Step 2: Preparation of 2-(2-(2-(2-((2-(2, 6-dioxopiperidin-3-yl)- 1 , 3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetic acid
[00531] To a solution of tert-butyl 2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetate (0.15 g, 0.28 mmol) in DCM (1.5 mL) was added TFA (1.5 mL) and stirred at 25 °C for 1 hour to give a yellow solution. The reaction mixture was concentrated under reduced pressure to give 2-(2-(2-(2-((2-(2,6- dioxopiperidin-3-yl)-l,3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetic acid (0.13 g, crude) as a yellow oil. LCMS (ESI) m/z = 478.2.
[00532] Step 3: Preparation of tert-butyl 3-(2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine-l- carboxylate
[00533] To a solution of 2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindolin-4- yl)oxy)acetamido)ethoxy)ethoxy)acetic acid (0.13 g, 0.27 mmol) and HATU (0.16 g, 0.41 mmol) in DMF (3 mL) was added ethylbis(propan-2-yl)amine (0.14 g, 1.1 mmol), then tertbutyl 3 -amino-3-(pyri din-2 -yl)azeti dine- 1- carboxylate (81 mg, 0.33 mmol) was added in it and stirred at 25 °C for 2 hours to give a yellow solution. The reaction mixture was filtered and the filter was purified by reverse phase (0.1% FA) to give tert-butyl 3-(2-(2-(2-(2-((2- (2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindolin-4- yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3 -(pyri din-2 -yl)azeti dine- 1 -carboxylate (80 mg, 42% yield) as a yellow solid. LCMS (ESI) m/z = 709.3.
[00534] Step 4: Preparation of 2-((2-(2, 6-dioxopiperidin-3-yl)-l , 3-dioxoisoindolin-4- yl)oxy)-N-(2-(2-(2-oxo-2-((3-(pyridin-2-yl)azetidin-3- y I) amino) ethoxy) ethoxy) ethyl) acetamide
[00535] To a solution of tert-butyl 3-(2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine-l- carboxylate (40 mg, 56 pmol) in DCM (0.5 mL) was added TFA (0.5 mL) and stirred at 25 °C for 1 hour to give a yellow solution. The reaction mixture was concentrated under reduced pressure to give 2-((2-(2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindolin-4-yl)oxy)-N-(2-(2-(2- oxo-2-((3-(pyri din-2 -yl)azeti din-3 -yl)amino)ethoxy)ethoxy)ethyl)acetamide (40 mg, crude) as a yellow oil. LCMS (ESI) m/z = 609.1.
[00536] Step 5: Preparation of tert-butyl ((3S, 6S,10aR)-3-(3-(2-(2-(2-(2-((2-(2, 6- dioxopiperidin-3-yl)-l, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3- (pyridin-2-yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate [00537] To a solution of (3S,6S,10aR)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (20 mg, 61 pmol) in DMF (1 mL) was added HATU (35 mg, 92 pmol) and ethylbis(propan-2-yl)amine (79 mg, 0.61 mmol). The mixture was stirred at 25 °C for 10 minutes. Then, a solution of 2-{[2-(2,6-dioxopiperidin-3- yl)-l,3-dioxo-2,3-dihydro-lH-isoindol-4-yl]oxy}-N-{2-[2-({[3-(pyridin-2-yl)azetidin-3- yl]carbamoyl}methoxy)ethoxy]ethyl}acetamide (45 mg, 73 pmol), ethylbis(propan-2- yl)amine (79 mg, 0.61 mmol) in DMF (1 mL) was added to the mixture. The mixture was stirred at 25 °C for 2 hours to give a yellow solution. The reaction mixture was filtered and the filtrate was purified by reverse phase chromatography (0.1% FA) and concentrated to give tert-butyl ((3S,6S,10aR)-3-(3-(2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3- dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3-(pyridin-2-yl)azetidine-l- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (30 mg, 53% yield) as a yellow oil. LCMS (ESI) m/z = 917.3.
[00538] Step 6: Preparation of N-(1-((3S,6S, 10aR)-6-amino-5-oxodecahydropyrrolo[ 1 ,2- a ]azocine-3-carbonyl)-3-(pyridin-2-yl)azetidin-3-yl) -2-( 2-(2-(2-( ( 2-( 2, 6-dioxopiperidin-3-yl)~ 1, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamide
[00539] To a solution tert-butyl ((3S,6S,10aR)-3-(3-(2-(2-(2-(2-((2-(2,6-dioxopiperidin-3- yl)-l,3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (30 mg, 33 pmol) in DCM (0.5 mL) and TFA (0.5 mL), the mixture was stirred at 25 °C for 1 hour to give a yellow solution. The reaction mixture was concentrated under reduced pressure to give N-(l-((3S,6S,10aR)-6-amino-5-oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-3-(pyridin- 2-yl)azetidin-3-yl)-2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindolin-4- yl)oxy)acetamido)ethoxy)ethoxy)acetamide (30 mg, crude) as a yellow oil. LCMS (ESI) m/z = 817.1. [00540] Step 7: Preparation of ((2-(((3S, 6S, 10aR)-3-(3-(2-(2-(2-(2-((2-(2, 6- dioxopiperidin-3-yl)-l, 3-dioxoisoindolin-4-yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3- (pyridin-2-yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)dijluoromethyl)phosphonic acid
[00541] To a solution of [difluoro({2-[(4-nitrophenoxy)carbonyl]-l-benzothiophen-5- yl})methyl]phosphonic acid (12 mg, 28 pmol) in DCM (1 mL) was added HOBt (5.1 mg, 33 pmol) and tri ethylamine (11 mg, 0.11 mmol), then a solution of N-(l-((3S,6S,10aR)-6- amino-5-oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-3-(pyridin-2-yl)azetidin-3-yl)-2-(2- (2-(2-((2-(2,6-dioxopiperi din-3 -yl)- 1 ,3 -dioxoi soindolin-4- yl)oxy)acetamido)ethoxy)ethoxy)acetamide (27 mg, 33 pmol) and triethylamine (11 mg, 0.11 mmol) in DCM (1 mL ) was added in it and stirred at 25 °C for 15 minutes to give a yellow solution. The reaction mixture was concentrated under reduced pressure to give a residue and was purified by prep-HPLC (column: Welch Ultimate Cl 8 150 * 25 mm x 5 urn; mobile phase: water (TFA)-ACN]; B%: 15% - 45%, 10 min). The solution was lyophilized to give ((2-(((3S,6S,10aR)-3-(3-(2-(2-(2-(2-((2-(2,6-dioxopiperidin-3-yl)-l,3-dioxoisoindolin-4- yl)oxy)acetamido)ethoxy)ethoxy)acetamido)-3-(pyri din-2 -yl)azeti dine- l-carbonyl)-5- oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphonic acid (Compound 32, 10 mg, 32% yield) as a white solid.
LCMS (ESI) m/z = 1107.3. 'H NMR (400 MHz, DMSO-tL) 8 9.00 - 8.92 (m, 1H), 8.88 (d, J = 6.4 Hz, 1H), 8.62 -8.55 (m, 1H), 8.32 (s, 1H), 8.14 (d, J = 8.4 Hz, 1H), 8.07 (s, 1H), 8.04 - 7.98 (m, 1H), 7.82 - 7.74 (m, 2H), 7.58 (d, J = 8.8 Hz, 1H), 7.50 - 7.46 (m, 1H), 7.41 - 7.33 (m, 2H), 7.32 - 7.27 (m, 1H), 5.16 - 5.05 (m, 1H), 4.98 - 4.90 (m, 1H), 4.76 (d, J = 9.2 Hz, 2H), 4.63 (d, J = 8.0 Hz, 1H), 4.53 - 4.48 (m, 1H), 4.40 - 4.24 (m, 4H), 4.18 (s, 2H), 4.02 - 3.97 (m, 3H), 3.65 (d, J = 3.6 Hz, 2H), 3.59 - 3.56 (m, 2H), 3.47 - 3.44 (m, 1H), 3.31 - 3.29 (m, 2H), 2.21 - 2.15 (m, 1H), 2.10 - 1.97 (m, 3H), 1.91 - 1.78 (m, 6H), 1.69 - 1.47 (m, 4H).
[00542] Preparation of (difluoro(2-(((3S,6S,10aR)-3-(3-(3-(2-(2-(((S)-l-((2S,4R)-4- hydroxy-2-(((S)-l-(4-(4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3- dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (Compound 33)
Figure imgf000171_0001
Figure imgf000172_0001
[00543] Step 1: Preparation of methyl 3-(2-(allyloxy)ethoxy)propanoate
[00544] To a solution of 2-(prop-2-en-l-yloxy)ethan-l-ol (10 g, 98 mmol, 1 eq) in tetrahydrofuran (200 mL) was added sodium (1.1 g, 49 mmol, 0.50 eq) at 0 °C. The mixture was stirred at 60 °C for 3 hours to give a yellow solution. The mixture was filtered and the filtrate was directly used next step without work up. To a solution of methyl acrylate (8.4 g, 98 mmol, 1 eq) in tetrahydrofuran (100 mL) was added sodium 2-(allyloxy)ethan-l-olate solution (200 mL, 49 mmol, 0.5 eq) at 0 °C. The mixture was stirred at 25 °C for 12 hours to give a yellow solution. The reaction was diluted with water (50.0 mL) and extracted with ethyl acetate (50.0 mL x 2), the combined organic layers were washed with saturated brine (40.0 mL x 2), dried over ISfeSCL, filtered and concentrated under reduced pressure to give crude product. The residue was purified by column chromatography to give methyl 3-(2- (allyloxy)ethoxy)propanoate (1.0 g, 5.3 mmol, 5.4% yield) as yellow oil.
[00545] Step 2: Preparation of 2-(2-(3-methoxy-3-oxopropoxy)ethoxy)acetic acid [00546] To a solution of methyl 3-(2-(allyloxy)ethoxy)propanoate (1.0 g, 5.3 mmol, 1 eq) in water (4.0 mL ), ACN (4.0 mL ) and CHCI3 (6.0 mL ) was added NaICk (5.7 g, 27 mmol, 5 eq) and RuCh (549 mg, 2.7 mmol, 0.5 eq). The reaction was stirred at 25 °C for 1 hour to give a green-black muddy solution. The reaction was diluted with water (50 mL) and extracted with ethyl acetate (50 mL x 2), the combined organic layers were washed with saturated brine (40 mL x 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give 2-(2-(3-m ethoxy-3 -oxopropoxy)ethoxy)acetic acid (1.2 g, crude) was obtained as green-black solid and was used into the next step without further purification. JH NMR (400 MHz, CHLOROFORM-d) 5 4.36 - 4.29 (m, 1H), 4.19 - 4.15 (m, 2H), 3.84 - 3.80 (m, 2H), 3.73 - 3.71 (m, 3H), 3.69 - 3.66 (m, 2H), 3.35 (d, J = 13.6 Hz, 2H), 2.64 (t, J = 6.4 Hz, 2H).
[00547] Step 3: Preparation of methyl 3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)propanoate
[00548] To a solution of 2-(2-(3-m ethoxy-3 -oxopropoxy)ethoxy)acetic acid (1.2 g, 5.8 mmol, 1 eq) in DMF (5.0 mL ) was added HATU (2.4 g, 6.4 mmol, 1.1 eq) and DIEA (2.2 g, 17 mmol, 3 eq) the reaction was stirred 10 minutes to give yellow clean solution, Then was added a solution of (2S,4R)-l-((S)-2-amino-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4- (4-methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (2.6 g, 5.8 mmol, 1 eq) in DMF (5.0 mL ) which was added DIEA (2.2 g, 17 mmol, 3 eq) adjust to pH= 8 ~ 9 and then was stirred at 25 °C for 30 minutes to give a yellow clean solution. The reaction was diluted with water (50 mL) and extracted with ethyl acetate (50 mL x 2), the combined organic layers were washed with saturated brine (40 mL x 2), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by reversed phase prep HPLC (TFA modifier) and combined fractions were lyophilized to afford methyl 3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4-methylthiazol-5- yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)amino)-2- oxoethoxy)ethoxy)propanoate (1.0 g, 70% purity, 1.1 mmol, 19.0% yield) was obtained as a brassy yellow solid. LCMS (ESI) m/z=633.1
[00549] Step 4: Preparation of 3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)propanoic acid [00550] To a solution of methyl 3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)propanoate (1.0 g, 70% purity, 1.1 mmol, 1 eq) in THF (3 mL ), H2O (3 mL ) and MeOH (3 mL ) was added lithium hydroxide (46 mg, 1.1 mmol, 1.0 eq), The mixture was stirred at 25 °C for 16 hours to give a light -yellow clean solution. The reaction was purified by reversed phase (TFA) then lyophilization to give 3-(2-(2-(((S)-l- ((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l- yl)-3,3-dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)propanoic acid (200 mg, 323 pmol, 20% yield) as a white solid. LCMS (ESI) m/z=619.2. 'H NMR (400 MHz, METHANOL-d4) 8 9.00 (s, 1H), 7.49 - 7.39 (m, 4H), 5.01 (q, J = 6.8 Hz, 1H), 4.71 - 4.66 (m, 1H), 4.62 - 4.54 (m, 1H), 4.47 - 4.41 (m, 1H), 4.09 - 4.01 (m, 2H), 3.89 - 3.66 (m, 8H), 2.60 (t, J = 6.4 Hz, 2H), 2.50 (s, 3H), 2.24 - 2.16 (m, 1H), 1.97 (dt, J = 4.4, 8.8 Hz, 1H), 1.59 - 1.48 (m, 3H), 1.10 - 1.01 (m, 9H)
[00551] Step 5: Preparation of tert-butyl 3-(3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l- ( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyridin-2-yl)azetidine-l-carboxylate
[00552] To a solution of 3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)propanoic acid (180 mg, 290 pmol, 1 eq), EDCI (83 mg, 435 pmol, 1.5 eq) and tert-butyl 3-amino-3-(pyridin-2-yl)azetidine-l-carboxylate (72.3 mg, 290 pmol, 1 eq) in pyridine (4 mL ) was s stirred at 25 °C for 1 hours to give a yellow clean solution. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by reversed phase(TFA) then lyophilization to give tert -butyl 3-(3- (2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4-methylthiazol-5- yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)amino)-2- oxoethoxy)ethoxy)propanamido)-3-(pyri din-2 -yl)azeti dine- 1 -carboxylate (140 mg, 164 pmol, 57% yield) as a white solid. LCMS (ESI) m/z=850.4
[00553] Step 6: Preparation of (2S,4R)-l-((S)-3,3-dimethyl-2-(2-(2-(3-oxo-3-((3-(pyridin- 2-yl)azetidin-3-yl)amino)propoxy)ethoxy)acetamido) butanoyl)-4-hydroxy-N-((S)-l-( 4-( 4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide
[00554] To a solution of tert-butyl 3-(3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2- yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyri din-2 -yl)azeti dine- 1 -carboxylate (140 mg, 164 pmol, 1 eq) in DCM (3.0 mL ) was added TFA (1.0 mL). The mixture was stirred at 20 °C for 1 hour to give a yellow clear solution. The reaction mixture was concentrated under reduced pressure to give (2S,4R)-l-((S)-3,3-dimethyl-2-(2-(2-(3-oxo-3-((3-(pyridin-2- yl)azetidin-3-yl)amino)propoxy)ethoxy)acetamido)butanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (140 mg, crude) as a yellow oil. LCMS (ESI) m/z=750.4
[00555] Step 7: Preparation of tert-butyl ((3S,6S,10aR)-3-(3-(3-(2-(2-(((S)-l-((2S,4R)-4- hydroxy-2-( ( (S)-l-( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3- dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate
[00556] To a solution of (3S,6S,10aR)-6-((tert-butoxycarbonyl)amino)-5- oxodecahydropyrrolo[l,2-a]azocine-3-carboxylic acid (61 mg, 186 pmol, 1.0 eq) in DMF (2.0 mL ) was added DIEA (72.1 mg, 558 pmol, 3.0 eq) and HATU (70.7 mg, 186 pmol, 1.0 eq), the mixture was stirred at 25 °C for 10 minutes to give a brownness clean solution then was added a solution of (2S,4R)-l-((S)-3,3-dimethyl-2-(2-(2-(3-oxo-3-((3-(pyridin-2- yl)azetidin-3-yl)amino)propoxy)ethoxy)acetamido)butanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (140 mg, 186 pmol, 1.0 eq) in DMF (1.0 mL ) was added N,N-diisopropylethylamine (72 mg, 558 pmol, 3.0 eq), then the mixture was stirred at 25 °C for 1 hour to give a brown clear solution. The reaction was purified by reverse phase prep HPLC (TFA modifier) and combined fractions were frozen and lyophilized to give tert-butyl ((3S,6S,10aR)-3-(3-(3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2- (((S)-l-(4-(4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l- oxobutan-2 -yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyri din-2 -yl)azeti dine- 1- carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (120 mg, 113 pmol, 61% yield) as a white solid. LCMS (ESI) m/z=1058.6. 1 H NMR (400 MHz, CHLOROFORM-d) 5 9.19 - 8.89 (m, 1H), 8.84 - 8.75 (m, 1H), 8.58 (d, J = 5.2 Hz, 1H), 8.24 - 8.07 (m, 1H), 7.88 - 7.71 (m, 1H), 7.62 - 7.40 (m, 2H), 7.37 - 7.27 (m, 4H), 5.16 - 5.00 (m, 2H), 4.79 (dd, J = 1.6, 9.2 Hz, 1H), 4.74 - 4.65 (m, 2H), 4.65 - 4.51 (m, 5H), 4.47 - 4.32 (m, 5H), 4.29 - 4.20 (m, 2H), 4.18 - 4.00 (m, 3H), 3.95 - 3.87 (m, 2H), 3.77 - 3.66 (m, 3H), 3.63 - 3.55 (m, 3H), 3.33 (s, 3H), 2.18 - 1.83 (m, 8H), 1.70 - 1.46 (m, 6H), 1.44 - 1.37 (m, 5H), 1.08 - 0.95 (m, 9H). [00557] Step 8: Preparation of (2S,4R)-l-((S)-2-(2-(2-(3-((l-((3S,6S,10aR)-6-amino-5- oxodecahydropyrrolo[ 1, 2 -a ]azocine-3-carbonyl) -3-(pyridin-2-yl)azetidin-3-yl)amino)-3- oxopropoxy)ethoxy)acetamido)-3 , 3-dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide
[00558] To a solution of tert-butyl ((3S,6S,10aR)-3-(3-(3-(2-(2-(((S)-l-((2S,4R)-4- hydroxy-2-(((S)-l-(4-(4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3- dimethyl- 1-oxobutan -2 -yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamate (150 mg, 141 pmol, 1 eq) in DCM (1.0 mL ) was added TFA (0.3 mL). The mixture was stirred at 20 °C for 1 hour to give a yellow clear solution. The reaction mixture was concentrated under reduced pressure to give (2S,4R)-l-((S)-2-(2-(2-(3-((l-((3S,6S,10aR)-6-amino-5- oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-3-(pyridin-2-yl)azetidin-3-yl)amino)-3- oxopropoxy)ethoxy)acetamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (100 mg, crude) as a yellow oil. [00559] Step 9: Preparation of (difluoro(2-(((3S,6S,10aR)-3-(3-(3-(2-(2-(((S)-l-((2S,4R)~ 4-hydroxy-2-( ( (S)-l-( 4-( 4-methylthiazol-5-yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3, 3- dimethyl-l-oxobutan-2-yl)amino)-2-oxoethoxy)ethoxy)propanamido)-3-(pyridin-2- yl)azetidine-l-carbonyl)-5-oxodecahydropyrrolo[l,2-a]azocin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)methyl)phosphonic acid
[00560] To a solution of [difluoro({2-[(4-nitrophenoxy)carbonyl]-l-benzothiophen-5- yl})methyl]phosphonic acid (45 mg, 104 pmol, 1.0 eq) in DMF (1.0 mL) was added 1- hydroxybenzotriazole (17 mg, 126 pmol, 1.2 eq) and DIEA (40.3 mg, 312 pmol, 3.0 eq), the mixture was stirred at 25 °C for 10 minutes to give a yellow clean solution then was added a solution of (2S,4R)- 1 -((S)-2-(2-(2-(3 -(( 1 -((3 S,6S, 10aR)-6-amino-5 - oxodecahydropyrrolo[l,2-a]azocine-3-carbonyl)-3-(pyridin-2-yl)azetidin-3-yl)amino)-3- oxopropoxy)ethoxy)acetamido)-3,3-dimethylbutanoyl)-4-hydroxy-N-((S)-l-(4-(4- methylthiazol-5-yl)phenyl)ethyl)pyrrolidine-2-carboxamide (100 mg, 104 pmol, 1.0 eq) in DMF (1.5 mL) was added DIEA (40.3 mg, 312 pmol, 3.0 eq). The mixture was stirred at 25 °C for 1 hours to give a yellow clear solution. The reaction was purified by prep-HPLC (neutral condition; (column :Phenomenex luna Cl 8 150*25mm* lOum, mobile phasewater( NH4HCO3)-ACN:; B%:B%: 16% -36 %, 30 min ) to freeze-drying to give (difluoro(2- (((3S,6S,10aR)-3-(3-(3-(2-(2-(((S)-l-((2S,4R)-4-hydroxy-2-(((S)-l-(4-(4-methylthiazol-5- yl)phenyl)ethyl)carbamoyl)pyrrolidin-l-yl)-3,3-dimethyl-l-oxobutan-2-yl)amino)-2- oxoethoxy)ethoxy)propanamido)-3-(pyridin-2-yl)azetidine-l-carbonyl)-5- oxodecahydropyrrolo[l,2-a]azocin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)methyl)phosphonic acid (Compound 33, 38.3 mg, 30.6 pmol, 30% yield) was obtained as a white solid. LCMS (ESI) m/z=1248.2. 'HNMR (400 MHz, CHLOROFORM-d) 5 8.86 (d, J = 4.8 Hz, 1H), 8.66 - 8.54 (m, 1H), 8.20 - 8.11 (m, 1H), 8.07 - 8.00 (m, 1H), 7.94 - 7.84 (m, 1H), 7.79 - 7.71 (m, 2H), 7.69 - 7.59 (m, 1H), 7.45 - 7.36 (m, 4H), 7.34 - 7.22 (m, 1H), 5.05 -
4.97 (m, 2H), 4.80 - 4.77 (m, 1H), 4.73 - 4.65 (m, 1H), 4.62 - 4.43 (m, 4H), 4.42 - 4.29 (m,
3H), 4.05 - 3.99 (m, 2H), 3.87 - 3.61 (m, 8H), 2.80 - 2.64 (m, 1H), 2.57 - 2.42 (m, 4H), 2.34 -
2.17 (m, 3H), 2.07 - 1.91 (m, 6H), 1.89 - 1.77 (m, 3H), 1.73 - 1.60 (m, 2H), 1.55 - 1.46 (m,
3H), 1.07 - 0.97 (m, 9H).
[00561] Preparation of ((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)-3- methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphonic acid (Compound 34)
Figure imgf000177_0001
Figure imgf000178_0001
[00562] Step 1: Preparation of l-(4-methoxybenzyl)-2, 6-dioxopiperidin-3-yl trifluoromethanesulfonate
[00563] A solution of 3 -hydroxy- l-(4-methoxybenzyl)piperidine-2, 6-dione (1 g, 4.01 mmol, 1 eq), pyridine (634 mg, 8.02 mmol, 2 eq) in DCM (1 mL ) was added trifluoromethanesulfonic anhydride (1.69 g, 6.01 mmol, 1.5 eq) at 0 °C. The mixture was stirred at 0 °C for 0.5 hour. The mixture was concentrated under reduced pressure to give a residue. The residue was purified by flash silica gel chromatography to give 1 -(4- methoxybenzyl)-2, 6-di oxopiperi din-3 -yl trifluoromethanesulfonate (1.49 g, 3.90 mmol, 98%) as a yellow oil. 'H NMR (400 MHz, CHLOROFORM-d) 3 7.36 (d, J= 8.8 Hz, 2H), 6.85 - 6.81 (m, 2H), 5.32 - 5.30 (m, 1H), 4.90 (s, 2H), 3.79 (s, 3H), 3.02 - 2.96 (m, 1H), 2.78 - 2.69 (m, 1H), 2.43 - 2.31 (m, 2H).
[00564] Step 2: Preparation of 3-(5-bromo-3-methyl-2-oxo-2,3-dihydro-lH- benzo[ d]imidazol-l-yl)-l-( 4-methoxybenzyl)piperidine-2, 6-dione
[00565] A solution of 6-bromo-l-methyl-l,3-dihydro-2H-benzo[d]imidazol-2-one (356 mg, 1.57 mmol, 1.2 eq), potassium tert-butoxide (293 mg, 2.62 mmol, 2 eq) in THF (1 mL) was added l-(4-methoxybenzyl)-2,6-dioxopiperidin-3-yl trifluoromethanesulfonate (500 mg, 1.31 mmol, 1 eq) at 0 °C. The mixture was stirred at 25 °C for 0.5 hour. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by flash silica gel chromatography to give a yellow solid, the solid was triturated with methanol, then filtered to give a white solid to give 3-(5-bromo-3-methyl-2-oxo-2,3-dihydro-lH- benzo[d]imidazol-l-yl)-l-(4-methoxybenzyl)piperidine-2, 6-dione (135 mg, 294 pmol, 22.5% yield) as a white solid. XH NMR (400 MHz, DMSO-d6) 3 7.47 (d, J= 1.6 Hz, 1H), 7.23 - 7.15 (m, 3H), 7.00 (d, J= 8.4 Hz, 1H), 6.88 - 6.82 (m, 2H), 5.55 - 5.51 (m, 1H), 4.84 - 4.73 (m, 2H), 3.72 (s, 3H), 3.34 (s, 3H), 3.09 - 2.98 (m, 1H), 2.86 - 2.65 (m, 3H). [00566] Step 3: Preparation of 3-(5-bromo-3-methyl-2-oxo-2,3-dihydro-lH- benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
[00567] A solution of 3-(5-bromo-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-l-yl)- l-[(4-methox-yphenyl)methyl]piperidine-2, 6-dione (50 mg, 109 pmol, 1 eq) in toluene (1 mL ) was added me-thanesulfonic acid (0.30 mL, 109 pmol, 1 eq). The mixture was stirred at 110 °C for 2 hours. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by flash silica gel chromatography to give 3-(5-bromo-3- methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione (20 mg, 59pmol, 54% yield) a white solid. LCMS (ESI) m/z = 337.9
[00568] Step 4: Preparation of tert-butyl 3-(4-(4-(3-hydroxypropyl)piperidin-l-yl)pyridin- 3-yl)azetidine-l -carboxylate
[00569] A solution of tert-butyl 3 -(4-fluoropyri din-3 -yl)azeti dine- 1 -carboxylate (1 g, 3.96 mmo, 1.0 eq), cesium carbonate (3.87 g, 11.9 mmol, 3.5 eq) in DMSO (10 mL) was added 3- (piperidin-4-yl)propan-l-ol (0.85 g, 5.95 mmol, 1.5 eq) at 12 hours. The residue was diluted with water (20 mL) and extracted with ethyl acetate (30 mL x 3). The combined organic layers were washed with brine (30 mL x 3), dried over anhydrous Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by flash silica gel chromatography to give tert-butyl 3-(4-(4-(3-hydroxypropyl)piperidin-l-yl)pyridin- 3 -yl)azetidine-l -carboxylate (962 mg, 2.56 mmol, 64% yield) was obtained as a yellow solid.LCMS (ESI) m/z = 376.3
[00570] Step 5: Preparation of tert-butyl 3-(4-(4-(3-oxopropyl)piperidin-l-yl)pyridin-3- yl)azetidine-l -carboxylate
[00571] A solution of tert-butyl 3-{4-[4-(3-hydroxypropyl)piperidin-l-yl]pyridin-3- yl} azetidine- 1 -carboxylate (200 mg, 532 pmol, 1 eq) in DCM (2 mL) was added 1,1- bis(acetyloxy)-3-oxo-llambda5,2-benziodaoxol-l-yl acetate (248 mg, 585 pmol, 1.1 eq) at 0 °C. The mixture was stirred at 25 °C for 1 hour. The reaction mixture was poured into saturation Na2S20s (6 mL) aqueous solution and stirred at 25 °C for 0.5 hour. Then separated, the organic layer was washed with NaHCCh (4 mL x 3), followed by brine (6 mL), then dried over Na2SC>4 and concentrated. No further purification, tert-butyl 3-(4-(4-(3- oxopropyl)piperi din- l-yl)pyri din-3 -yl)azeti dine- 1 -carboxylate (215 mg, 575 pmol, crude) was obtained as a yellow solid. LCMS (ESI) m/z = 374.1
[00572] Step 6: Preparation of tert-butyl 3-(4-(4-(but-3-yn-l-yl)piperidin-l-yl)pyridin-3- yl)azetidine-l -carboxylate [00573] A solution of tert-butyl 3-{4-[4-(3-oxopropyl)piperidin-l-yl]pyridin-3- yl] azetidine- 1 -carboxylate (215 mg, 575 pmol, 1 eq), potassium carbonate (158 mg, 1.15 mmol, 2 eq) in MeOH (2 mL ) was added dimethyl (l-diazo-2-oxopropyl)phosphonate (121 mg, 632 pmol, 1.1 eq) at 0 °C. The mixture was stirred at 90 °C for 9 hours. The residue was purified by flash silica gel chromatography to give tert-butyl 3-{4-[4-(but-3-yn-l- yl)piperi din- l-yl]pyri din-3 -yljazeti dine- 1 -carboxylate (109 mg, 294 pmol, 51% yield) as a white oil. 'H NMR (400 MHz, CHLOROFORM-d) 3 8.52 (s, 1H), 8.36 (d, J= 5.6 Hz, 1H), 6.87 (d, J= 5.6 Hz, 1H), 4.43 - 4.32 (m, 2H), 4.08 - 4.01 (m, 2H), 4.00 - 3.92 (m, 1H), 3.14 (d, J= 12.0 Hz, 2H), 2.73 (t, J= 11.6 Hz, 2H), 2.30 - 2.26 (m, 2H), 1.98 (t, J= 2.8 Hz, 1H), 1.85 (d, J= 11.6 Hz, 2H), 1.58 - 1.53 (m, 2H), 1.48 (s, 9H), 1.42 - 1.31 (m, 3H).
[00574] Step 7: Preparation of tert-butyl 3-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)-3-methyl- 2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin-3- yl)azetidine-l -carboxylate
[00575] A solution of tert-butyl 3-(4-(4-(but-3-yn-l-yl)piperidin-l-yl)pyridin-3- yl)azetidine-l -carboxylate (63 mg, 170 pmol, 1 eq) in DMSO (0.1 mL) was added 3-(5- bromo-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione (57.40 mg, 170 pmol, 1 eq), copper iodide (1.68 mg, 17 pmol, 0.1 eq), palladium bis(triphenylphosphine) dichloride (12 mg, 17 pmol, 0.1 eq). The mixture was stirred at 80 °C for 5 hours. The residue was diluted with water (5 mL) and extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with brine (10 mL x 3), dried over anhydrous Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by flash silica gel chromatography to give tert-butyl 3-(4-(4-(4-(l-(2,6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carboxylate (50 mg, 80 pmol, 47% yield) as a yellow solid. LCMS (ESI) m/z = 627.5. 1 H NMR (400 MHz, CHLOROFORM-d) <5 8.11 (s, 1H), 7.71 - 7.44 (m, 1H), 7.24 - 7.12 (m, 2H), 7.07 (s, 1H), 6.74 - 6.67 (m, 1H), 5.24 - 5.13 (m, 1H), 4.46 - 4.34 (m, 2H), 4.09 - 4.03 (m, 1H), 3.43 (s, 3H), 3.11 - 3.05 (m, 2H), 3.00 - 2.65 (m, 5H), 2.49 (t, J= 6.4 Hz, 2H), 2.37 - 2.19 (m, 2H), 1.93 - 1.75 (m, 2H), 1.64 (s, 3H), 1.48 (s, 9H), 1.44 - 1.33 (m, 3H).
[00576] Step 8: Preparation of 3-(5-(4-(l-(3-(azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but- l-yn-l-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione [00577] A solution of tert-butyl 3-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)-3-methyl-2-oxo- 2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin-3-yl)azetidine-l- carboxylate (40 mg, 64 pmol, 1 eq) in DCM (0.60 mL) was added TFA (0.20 mL). The mixture was stirred at 25 °C for 0.5 hour. The mixture was concentrated under reduced pressure to give 3-(5-(4-(l-(3-(azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but-l-yn-l-yl)-3- methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione (33 mg, crude) as a yellow oil.
[00578] Step 9: Preparation of tert-butyl ((3S, 6S,9aS)-3-(3-(4-(4-(4-(l-(2, 6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a azepin- 6-yl) carbamate
[00579] A solution of (3S,6S,9aS)-6-((tert-butoxycarbonyl)amino)-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carboxylic acid (16 mg, 52 pmol, 1 eq), ethylbis(propan-2-yl)amine (36 pL, 208 pmol, 4 eq) in DMF (0.50 mL) was added 1- [(dimethylamino)(dimethyliminio)methyl]-3-oxo-2H,3H-31ambda5-[l,2,3]triazolo[5,4- b]pyridin-3-ylium-2-ide; hexafluoro-lambda5-phosphanuide (24 mg, 63 pmol, 1.2 eq). The mixture was stirred at 25 °C for 10 minutes. Then was added 3-(5-(4-(l-(3-(azetidin-3- yl)pyridin-4-yl)piperidin-4-yl)but- 1 -yn- 1 -y 1) -3 -methyl -2-oxo-2, 3 -dihydro- 1 H- benzo[d]imidazol-l-yl)piperidine-2, 6-dione (33 mg, 63 pmol, 1.2 eq), ethylbi s(propan -2- yl)amine (36 pL, 208 pmol, 4 eq) in DMF (0.50 mL). The mixture was stirred at 25 °C for 20 minutes. The mixture was diluted with water (3 mL) and extracted with ethyl acetate (3 mL x 3). The combined organic layers were washed with brine (3 mL x 3), dried over anhydrous Na2SO4, filtered and concentrated under reduced pressure to give a residue. The residue was purified by flash silica gel chromatography to give tert-butyl N-[(3S,6S,9aS)-3-{3-[4-(4-{4- [l-(2,6-dioxopiperidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5-yl]but-3-yn- 1 -yl Jpiperidin- 1 -yl)pyri din-3 -yl]azetidine- 1 -carbonyl } -5 -oxo-octahydro- lH-pyrrolo[ 1 ,2- a]azepin-6-yl]carbamate (50 mg, impurity) as a yellow solid. LCMS (ESI) m/z = 821.4 [00580] Step 10: Preparation of 3-(5-(4-(l-(3-(l-((3S, 6S,9aS)-6-amino-5-oxooctahydro- lH-pyrrolo[ 1, 2 -a ]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl) but-l-yn-1- yl)- 3 -me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione
[00581] A solution of tert-butyl N-[(3S,6S,9aS)-3-{3-[4-(4-{4-[l-(2,6-dioxopiperidin-3- yl)-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5-yl]but-3-yn-l-yl}piperidin-l- yl)pyridin-3-yl]azetidine-l-carbonyl}-5-oxo-octahydro-lH-pyrrolo[l,2-a]azepin-6- yl]carbamate (25 mg, 30 pmol, 1 eq) in DCM (0.30 mL) was added TFA (0.10 mL, 30 pmol, 1 eq). The mixture was stirred at 25 °C for 0.5 hour. The mixture was concentrated under reduced pressure to give crude 3-(5-{4-[l-(3-{l-[(3S,6S,9aS)-6-amino-5-oxo-octahydro-lH- pyrrolof 1 ,2-a]azepine-3 -carbonyl]azeti din-3 -yl }py ridin-4-yl)piperidin-4-yl]but- 1 -yn- 1 -yl } -3- methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-l-yl)piperidine-2, 6-dione (22 mg, crude) as a yellow oil.
[00582] Step 11 : Preparation of ((2-(((3S, 6S, 9aS) -3-(3-(4-(4-(4-(l-(2, 6-dioxopiperidin-3- yl)- 3 -me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)dijluoromethyl)phosphonic acid
[00583] A solution of 3-(5-{4-[l-(3-{ l-[(3S,6S,9aS)-6-amino-5-oxo-octahydro-lH- pyrrolo[ 1 ,2-a]azepine-3 -carbonyl]azeti din-3 -yl }py ridin-4-yl)piperidin-4-yl]but- 1 -yn- 1 -yl } -3- methyl-2-oxo-2,3-dihydr-o-lH-l,3-benzodiazol-l-yl)piperidine-2, 6-dione (22 mg, 31 pmol, 1.2 eq) in DMF (0.20 mL) was added ethylbis(propan-2-yl)amine (18 pL, 101 pmol, 4 eq), (difluoro(2-((perfluorophenoxy)carbonyl)benzo[b]thiophen-5-yl)methyl)phosphonic acid (12 mg, 25 pmol, 1 eq). The mixture was stirred at 25 °C for 0.5 hour. The mixture was purified by prep-HPLC (Column: Welch Xtimate Cl 8 150 * 25 mm x 5 urn; water (TFA) - ACN] B%: 20% - 50%, 10 min) to give ((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6-dioxopiperidin-3- yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbon-yl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluorome-thyl)phosphonic acid (Compound 34, 3.90 mg, 15% yield) as a white solid. LCMS (ESI) m/z = 1011.4. XH NMR (400 MHz, DMSO- d6) b 11.24 - 11.03 (m, 1H), 8.86 - 8.61 (m, 1H), 8.51 - 8.26 (m, 1H), 8.23 - 7.93 (m, 4H), 7.63 - 7.44 (m, 1H), 7.21 (d, J= 19.6 Hz, 1H), 7.10 - 6.88 (m, 3H), 5.43 - 5.31 (m, 1H), 4.77 - 4.57 (m, 2H), 4.50 - 4.30 (m, 2H), 4.27 - 4.07 (m, 2H), 4.00 - 3.92 (m, 2H), 3.40 (s, 1H), 3.32 (s, 1H), 2.97 - 2.81 (m, 4H), 2.76 - 2.68 (m, 1H), 2.64 - 2.57 (m, 2H), 2.23 - 2.09 (m, 2H), 2.07 - 1.91 (m, 4H), 1.86 - 1.61 (m, 11H), 1.59 - 1.42 (m, 3H), 1.36 - 1.18 (m, 3H).
[00584] Preparation of S,SB(((((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6-dioxopiperidin-3- yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane- 2,1-diyl)) bis(2,2-dimethylpropanethioate) (Compound 35)
Figure imgf000183_0001
[00585] Step 1: Preparation of S,S\4(((((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)dijluoromethyl)phosphoryl) bis( oxy) ) bis(ethane-2, 1-diyl) ) bis(2, 2 -dimethylpropanethioate) [00586] To a solution of 4-nitrophenyl 5-{[bis({2-[(2,2- dimethylpropanoyl)sulfanyl]ethoxy})phosphoryl]difluoromethyl}-l-benzothiophene-2- carboxylate (80 mg, 0.11 mmol, 1 eq) and 3-(5-{4-[l-(3-{ l-[(3S,6S,9aS)-6-amino-5-oxo- octahydro-lH-pyrrolo[l,2-a]azepine-3-carbonyl]azetidin-3-yl}pyridin-4-yl)piperidin-4- yl]but-l-yn-l-yl}-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-l-yl)piperidine-2, 6-dione (0.10 g, 0.14 mmol, 1.3 eq) in DMF (1 mL) was added hydroxybenzotriazole (22 mg, 0.17 mmol, 1.5 eq) and N,N-diisopropylethylamine (29 mg, 0.22 mmol, 2 eq) was stirred at 25 °C for 20 minutes to give a brown solution. The reaction mixture was filtered and the filtrate was purified by prep-HPLC (column: Waters xbridge 150 * 25 mm 10 um; mobile phase: [water (NH4HCO3)-ACN]; B%: 58% - 78%, 14 min) then lyophilization to give S,SE(((((2- (((3 S, 6 S, 9aS)-3 -(3 -(4-(4-(4-( 1 -(2, 6-dioxopiperi din-3 -y 1 ) -3 -methyl -2-oxo-2, 3 -dihydro- 1 H- benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5- oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)difluoromethyl)phosphoryl)bis(oxy))bis(ethane-2, 1-diyl)) bis(2,2-dimethylpropanethioate) (Compound 35, 34 mg, 26 pmol, 24% yield) as a white solid. LCMS (ESI) m/z = 1299.8. H NMR (400 MHz, METHANOL-^) 6 8.58 - 8.41 (m, 1H), 8.27 (t, J = 5.6 Hz, 1H), 8.17 (d, J = 4.0 Hz, 2H), 8.12 - 8.03 (m, 1H), 7.64 (d, J = 8.8 Hz, 1H), 7.22 - 7.09 (m, 2H), 7.04 (dd, J = 3.2, 8.0 Hz, 2H), 5.32 (dd, J = 5.2, 12.4 Hz, 1H), 4.79 - 4.73 (m, 2H), 4.69 - 4.61 (m, 1H), 4.61 - 4.52 (m, 2H), 4.48 - 4.35 (m, 1H), 4.27 - 4.14 (m, 5H), 4.13 - 4.02 (m, 2H), 3.40 (d, J = 2.8 Hz, 3H), 3.24 - 3.18 (m, 2H), 3.16 - 3.10 (m, 4H), 2.94 - 2.87 (m, 1H), 2.83 - 2.71 (m, 4H), 2.54 - 2.44 (m, 2H), 2.35 - 2.26 (m, 1H), 2.21 - 2.07 (m, 3H), 2.03 - 1.95 (m, 3H), 1.91 (d, J = 10.4 Hz, 3H), 1.84 (d, J = 4.0 Hz, 2H), 1.70 - 1.59 (m, 3H), 1.45 (dd, J = 1.6, 7.2 Hz, 2H), 1.19 (s, 18H).
[00587] Preparation of ((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)-3- methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)fluoromethyl)phosphonic acid (Compound 36)
Figure imgf000185_0001
[00588] Step 1: Preparation of 3-(5-(4-(l-(3-(l-((3S, 6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but-l-yn-l-yl)-3- me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
[00589] To a solution of tert-butyl ((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)- 3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin- 3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamate (12 mg, 14 pmol, 1.0 eq) in DCM (0.15 mL) was added trifluoroacetic acid (0.05 mL). The mixture was stirred at 25 °C for 0.5 hour. The reaction mixture was concentrated under reduced pressure to give 3-(5-(4-(l-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but-l-yn-l-yl)-3-methyl-2- oxo-2, 3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione (13.0 mg, crude) was used into the next step without further purification.
Step 2: Preparation of ((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)-3-methyl- 2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin-3- yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)fluoromethyl)phosphonic acid
[00590] A mixture of 3-(5-(4-(l-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but-l-yn-l-yl)-3- methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-l-yl)piperidine-2, 6-dione (9.37 mg, 13.0 pmol, 1.2 eq) and ethylbi s(propan-2-yl)amine (5.63 mg, 43.6 pmol, 4.0 eq) in DMF (0.1 mL). The mixture was neutralized to pH = 7 - 8 with DIEA then stirred at 25 °C for 5 minutes. To a solution of (fluoro(2-((perfluorophenoxy)carbonyl)benzo[b]thiophen-5- yl)methyl)phosphonic acid (5.0 mg, 11 pmol, 1 eq) in DMF (0.1 mL) was added to the mixture and stirred at 25 °C for 15 minutes. The reaction mixture was purified by prep-HPLC (column: Welch Xtimate C18 150 x 25 mm x 5 urn; mobile phase: [water (FA) - ACN]; B%: 20% - 50%, 10 min) then lyophilization to give ((2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)fluoromethyl)phosphonic acid (Compound 36, 1.50 mg, 1.51 pmol, 13.8% yield) as a white solid. LCMS (ESI) m/z = 993.3.
[00591] 1 H NMR (400 MHz, DMSO-tL) b 11.11 (s, 1H), 8.76 - 8.66 (m, 1H), 8.49 - 8.27
(m, 2H), 8.22 (d, J = 12.4 Hz, 1H), 8.02 (dd, J = 3.2, 8.4 Hz, 1H), 7.98 - 7.93 (m, 1H), 7.52 (d, J = 8.0 Hz, 1H), 7.24 - 7.13 (m, 2H), 7.10 - 7.05 (m, 2H), 5.89 - 5.72 (m, 1H), 5.42 - 5.32 (m, 1H), 4.82 - 4.62 (m, 2H), 4.43 - 4.32 (m, 2H), 4.31 - 4.25 (m, 1H), 4.18 - 4.05 (m, 2H), 3.99 - 3.93 (m, 2H), 3.33 (s, 3H), 3.00 - 2.95 (m, 2H), 2.89 - 2.86 (m, 1H), 2.68 - 2.62 (m, 2H), 2.36 - 2.28 (m, 1H), 2.22 - 2.16 (m, 1H), 2.05 - 1.93 (m, 4H), 1.87 - 1.78 (m, 6H), 1.75 - 1.65 (m, 5H), 1.61 - 1.49 (m, 3H), 1.34 - 1.21 (m, 3H).
[00592] Preparation of ((lR)-(2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6-dioxopiperidin-3- yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)fluoromethyl)phosphonic acid (Compound 37)
Figure imgf000187_0001
[00593] Step 1: 3-(5-(4-(l-(3-(l-((3S,6S,9aS)-6-amino-5-oxooctahydro-lH-pyrrolo[l,2- a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but-l-yn-l-yl)-3-methyl-2- oxo-2, 3-dihydro-lH-benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
[00594] A mixture of tert-butyl N-[(3S,6S,9aS)-3-{3-[4-(4-{4-[l-(2,6-dioxopiperidin-3- yl)-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5-yl]but-3-yn-l-yl}piperidin-l- yl)pyridin-3-yl]azetidine-l-carbonyl}-5-oxo-octahydro-lH-pyrrolo[l,2-a]azepin-6- yl]carbamate (70 mg, 85 pmol, 1.0 eq) in methylene chloride (1.0 mL) was added trifluoroacetic acid (0.2 mL), then the mixture was stirred at 25 °C for 0.5 hours. The reaction was concentrated under reduced pressure to give 3-(5-{4-[l-(3-{ l-[(3S,6S,9aS)-6-amino-5- oxo-octahydro-lH-pyrrolo[l,2-a]azepine-3-carbonyl]azetidin-3-yl}pyridin-4-yl)piperidin-4- yl]but-l-yn-l-yl}-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-l-yl)piperidine-2, 6-dione (60 mg, crude) was obtained as a yellow oil. LCMS (ESI) m/z =721.5
[00595] Step 2: ((lR)-(2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6-dioxopiperidin-3-yl)-3- me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin-3- yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b ]thiophen-5-yl)fluoromethyl)phosphonic acid
[00596] A mixture of 3-(5-{4-[l-(3-{ l-[(3S,6S,9aS)-6-amino-5-oxo-octahydro-lH- pyrrolo[ 1 ,2-a]azepine-3 -carbonyl]azeti din-3 -yl }pyridin-4-yl)piperidin-4-yl]but- 1 -yn- 1 -yl } -3- methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-l-yl)piperidine-2, 6-dione (60 mg, 83 pmol,
I.0 eq) in dimethylformamide (1.0 mL) was added ethylbi s(propan -2 -yl)amine (32 mg, 0.25 mmol, 3.0 eq), [(R)-fluoro({2-[(2, 3,4,5, 6-pentafluorophenoxy)carbonyl]-l-benzothi ophen-5 - yl})methyl]phosphonic acid (30 mg, 67 pmol, 0.8 eq), and then the mixture was stirred at 25 °C for 0.2 hours. The reaction mixture was purified by reversed -phase HPLC (Column:Phenomenex luna C18 150 x 25mm x 10um;Condition:water(FA)-ACN;Gradient Time(min):8) to give [(R)-(2-{[(3S,6S,9aS)-3-{3-[4-(4-{4-[l-(2,6-dioxopiperidin-3-yl)-3- methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5-yl]but-3-yn-l-yl}piperidin-l-yl)pyri din-3- yl]azetidine-l-carbonyl}-5-oxo-octahydro-lH-pyrrolo[l,2-a]azepin-6-yl]carbamoyl}-l- benzothiophen-5-yl)(fhioro)methyl]phosphonic acid (Compound 37, 4.15 mg, 4.18 pmol, 5.0% yield) as a white solid. LCMS (ESI) m/z =993.5. 'H NMR (400 MHz, DMSO-t/e) 8
I I.11 (s, 1H), 8.71 (s, 1H), 8.47 - 8.30 (m, 1H), 8.16 (s, 2H), 7.88 (s, 2H), 7.47 (s, 1H), 7.23 (d, J= 11.6 Hz, 1H), 7.09 (s, 2H), 6.97 - 6.79 (m, 1H), 5.72 - 5.54 (m, 1H), 5.41 - 5.32 (m, 1H), 4.64 (d, J= 3.6 Hz, 2H), 4.52 - 4.32 (m, 3H), 4.26 (d, J= 4.4 Hz, 1H), 4.08 - 4.02 (m, 1H), 3.95 (d, J= 2.4 Hz, 3H), 3.32 (s, 4H), 3.18 - 3.08 (m, 3H), 2.95 - 2.82 (m, 2H), 2.71 - 2.62 (m, 4H), 2.17 (s, 1H), 2.00 (s, 3H), 1.85 - 1.73 (m, 7H), 1.55 (s, 3H), 1.39 - 1.10 (m, 3H).
[00597] Preparation of propyl (((l R)-(2-(((3S.6S.9aS)-3-(3-(4-(4-(4-(l-(2.6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)fluoromethyl)(phenoxy)phosphoryl)-L- alaninate (Compound 38)
Figure imgf000189_0001
[00598] Step 1: Preparation of tert-butyl ((3S, 6S,9aS)-3-(3-(4-(4-(4-(l-(2, 6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a azepin- 6-yl) carbamate
[00599] Mixture 1 of 3-[5-(4-{ l-[3-(azetidin-3-yl)pyridin-4-yl]piperidin-4-yl}but-l-yn-l- yl)-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-l-yl]piperidine-2, 6-dione (0.75 g, 1.4 mmol, 1.0 eq) in dimethylformamide (10 mL) was added ethylbis(propan-2-yl)amine to adjust the pH to 6 - 7, at the same time, a mixture 2of (3S,6S,9aS)-6-{[(tert- butoxy)carbonyl]amino}-5-oxo-octahydro-lH-pyrrolo[l,2-a]azepine-3-carboxylic acid (0.44 g, 1.4 mmol, 1.0 eq) and HATU (1.7 g, 4.4 mmol, 1.5 eq) in dimethylformamide (10 mL) was added ethylbi s(propan-2-yl)amine to adjust the pH to 10, and stirred for 5 mins. And then mixture 1 was added to mixture 2 slowly. The reaction was stirred at 25 °C for 0.2 hours. The mixture was purified by reversed-phase (FA) to give compound tert-butyl N-[(3S,6S,9aS)-3- {3-[4-(4-{4-[l-(2,6-dioxopiperidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5- yl ]but-3 -yn-1 -yl } pi peri di n-1 -yl )pyri di n-3 -yl] azeti di ne-1 -carbonyl } -5 -oxo-octahydro-1 H- pyrrolo[l,2-a]azepin-6-yl]carbamate (0.40 g, 0.49 mmol, 35% yeild) as a white solid. LCMS (ESI) m/z =821.3
[00600] Step 2: Preparation of 3-(5-(4-(l-(3-(l-((3S, 6S,9aS)-6-amino-5-oxooctahydro-lH- pyrrolo[l,2-a]azepine-3-carbonyl)azetidin-3-yl)pyridin-4-yl)piperidin-4-yl)but-l-yn-l-yl)-3- me thy 1-2 -oxo-2, 3-dihydro-lH-benzo[ d]imidazol-l-yl)piperidine-2, 6-dione
[00601] A mixture of tert-butyl N-[(3S,6S,9aS)-3-{3-[4-(4-{4-[l-(2,6-dioxopiperidin-3- yl)-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-5-yl]but-3-yn-l-yl}piperidin-l- yl)pyridin-3-yl]azetidine-l-carbonyl}-5-oxo-octahydro-lH-pyrrolo[l,2-a]azepin-6- yl]carbamate (50 mg, 60 pmol, 1.0 eq) in methylene chloride (5.0 mL) was added trifluoroacetic acid (0.5 mL), then the mixture was stirred at 25 °C for 0.2 hours. The reaction mixture was concentrated under reduced pressure to give compound 3 -(5-{4-[l-(3-{ 1- [(3S,6S,9aS)-6-amino-5-oxo-octahydro-lH-pyrrolo[l,2-a]azepine-3-carbonyl]azetidin-3- yl}pyridin-4-yl)piperidin-4-yl]but-l-yn-l-yl}-3-methyl-2-oxo-2,3-dihydro-lH-l,3- benzodiazol- l-yl)piperidine-2, 6-dione (50 mg, crude) as a yellow oil. LCMS (ESI) m/z =721.5
[00602] Step 3: Preparation of propyl (((1R)-(2~(((3S, 6S,9aS)-3-(3-(4-(4-(4-(l-(2, 6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a ]azepin-6-y I) carbamoyl) benzo [b ]thiophen-5-yl) fluoromethyl) (phenoxy)phosphoryl) -L- alaninate
[00603] A mixture of 3-(5-{4-[l-(3-{l-[(3S,6S,9aS)-6-amino-5-oxo-octahydro-lH- pyrrolo[ 1 ,2-a]azepine-3 -carbonyl]azeti din-3 -yl }pyridin-4-yl)piperidin-4-yl]but- 1 -yn- 1 -yl } -3- methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-l-yl)piperidine-2, 6-dione (50 mg, 69 pmol, 1.0 eq) in dimethylformamide (0.5 mL) was added ethylbis(propan-2-yl)amine to adjust the pH to 7, then added 2,3,4,5,6-pentafhrorophenyl 5-[(R)-fluoro({[(2S)-l-oxo-l- propoxypropan-2-yl]amino}(phenoxy)phosphoryl)methyl]-l-benzothiophene-2-carboxylate (31 mg, 48 pmol, 0.7 eq), and the mixture was stirred at 25 °C for 0.2 hours. The mixture was purified by reversed-phase HPLC (Column: Phenomenex luna Cl 8 150 * 25 mm x 10 um; Condition: water(FA)-ACN; Begin B: 34; End B: 54; Gradient Time(min): 10) to give propyl (2S)-2-({[(R)-(2-{[(3S,6S,9aS)-3-{3-[4-(4-{4-[l-(2,6-dioxopiperidin-3-yl)-3-methyl-2-oxo- 2,3-dihydro-lH-l,3-benzodiazol-5-yl]but-3-yn-l-yl}piperidin-l-yl)pyridin-3-yl]azetidine-l- carbonyl}-5-oxo-octahydro-lH-pyrrolo[l,2-a]azepin-6-yl]carbamoyl}-l-benzothiophen-5- yl)(fluoro)methyl](phenoxy)phosphoryl}amino)propanoate (Compound 38, 5.10 mg, 4.31 pmol, 6.28% yield) as a white solid. LCMS (ESI) m/z =1182.5
[00604] 'H NMR (400 MHz, METHANOL-^) 5 8.56 - 8.43 (m, 1H), 8.27 (dd, J= 5.6, 15.6 Hz, 1H), 8.12 (d, J= 7.6 Hz, 2H), 8.02 - 7.94 (m, 1H), 7.65 (t, J= 8.8 Hz, 1H), 7.34 (d, J= 4.0 Hz, 2H), 7.26 - 7.12 (m, 5H), 7.11 - 7.03 (m, 2H), 6.25 - 5.97 (m, 1H), 5.40 - 5.27 (m, 1H), 5.06 - 4.96 (m, 1H), 4.77 (d, J= 10.0 Hz, 2H), 4.71 - 4.53 (m, 3H), 4.49 - 4.35 (m, 1H), 4.30 - 4.21 (m, 1H), 4.16 - 4.06 (m, 2H), 4.01 - 3.97 (m, 1H), 3.94 - 3.80 (m, 2H), 3.41 (d, J= 8.4 Hz, 3H), 3.29 - 3.23 (m, 2H), 2.88 - 2.78 (m, 4H), 2.51 (td, J= 7.2, 14.4 Hz, 2H), 2.35 - 2.28 (m, 1H), 2.21 - 2.08 (m, 3H), 2.05 - 1.93 (m, 5H), 1.91 - 1.84 (m, 3H), 1.70 - 1.59 (m, 3H), 1.55 - 1.44 (m, 3H), 1.32 (s, 1H), 1.23 (d, J= 6.8 Hz, 3H), 0.92 - 0.84 (m, 3H).
[00605] Preparation of propyl (((1 S)-(2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2- a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5-yl)fluoromethyl)(phenoxy)phosphoryl)-L- alaninate (Compound 39)
Figure imgf000191_0001
[00606] Step 1: Preparation of propyl (((lS)-(2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6- dioxopiperidin-3-yl)-3-methyl-2-oxo-2, 3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l- yl)piperidin-l-yl)pyridin-3-yl)azetidine-l -carbonyl) -5-oxooctahydro-lH-pyrrolo[ 1, 2- a ]azepin-6-yl) carbamoyl) benzo [b ]thiophen-5-yl) fluoromethyl) (phenoxy)phosphoryl) -L- alaninate
[00607] To a solution of 2,3,4,5,6-pentafluorophenyl 5-[(S)-fluoro({[(2S)-l-oxo-l- propoxypropan-2-yl]amino}(phenoxy)phosphoryl)methyl]-l-benzothiophene-2- carboxylate (30 mg, 46 pmol, 1 eq) in DMF (1 mL) was added 3-(5-{4-[l-(3-{ l-[(3S,6S,9aS)-6-amino-5- oxo-octahydro-lH-pyrrolo[l,2-a]azepine-3- carbonyl]azetidin-3-yl}pyridin-4-yl)piperidin-4- yl]but-l-yn-l-yl}-3-methyl-2-oxo-2,3-dihydro-lH-l,3-benzodiazol-l-yl)piperidine-2, 6-dione (43 mg, 60 pmol, 1.3 eq) and ethylbis(propan-2-yl)amine (12 mg, 93 pmol, 2 eq), the mixture was stirred at 25 °C for 10 minutes to give a yellow solution. The reaction mixture was filtered and the filtrate was purified by prep-HPLC (column: Waters xbridge 150 * 25 mm xlO um Waters xbridge 150 x 25 mm x 10 um; mobile phase: [water (NH4HCO3)-ACN]; B%: 44% - 74%, 10 min). Subsquently lyophilization afforded propyl (((lS)-(2-
(((3 S, 6 S, 9aS)-3 -(3 -(4-(4-(4-( 1 -(2, 6-dioxopiperi din-3 -y 1 ) -3 -methyl -2-oxo-2, 3 -dihydro- 1 H- benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l-yl)pyridin-3-yl)azetidine-l-carbonyl)-5- oxooctahydro-lH-pyrrolo[l,2-a]azepin-6-yl)carbamoyl)benzo[b]thiophen-5- yl)fluoromethyl)(phenoxy)phosphoryl)-L-alaninate (Compound 39, 14 mg, 12 pmol, 25% yield) as a white solid. LCMS (ESI) m/z = 1182.3
[00608] 1H NMR (400 MHz, METHANOL-^) 5 8.58 - 8.41 (m, 1H), 8.31 - 8.21 (m, 1H), 8.16 - 8.05 (m, 2H), 8.02 - 7.93 (m, 1H), 7.68 - 7.60 (m, 1H), 7.38 - 7.28 (m, 2H), 7.25 - 7.10 (m, 5H), 7.04 (dd, J = 5.6, 8.0 Hz, 2H), 6.19 - 5.96 (m, 1H), 5.37 - 5.28 (m, 1H), 4.76 (d, J = 9.2 Hz, 2H), 4.70 - 4.62 (m, 1H), 4.61 - 4.52 (m, 2H), 4.49 - 4.33 (m, 1H), 4.30 - 4.20 (m, 1H), 4.16 - 4.04 (m, 2H), 3.98 - 3.94 (m, 1H), 3.94 - 3.85 (m, 1H), 3.39 (d, J = 8.4 Hz, 3H), 3.23 - 3.18 (m, 2H), 2.95 - 2.86 (m, 1H), 2.84 - 2.70 (m, 4H), 2.55 - 2.44 (m, 2H), 2.31 (dd, J = 2.8, 6.4 Hz, 1H), 2.21 - 2.11 (m, 2H), 2.07 - 1.97 (m, 3H), 1.95 - 1.80 (m, 6H), 1.70 - 1.59 (m, 3H), 1.57 - 1.50 (m, 2H), 1.45 (dd, J = 4.4, 7.6 Hz, 2H), 1.38 - 1.25 (m, 2H), 1.22 (dd, J = 2.4, 7.2 Hz, 2H), 0.91 - 0.83 (m, 3H).
[00609] Compound 40: ((!S)-(2-(((3S,6S,9aS)-3-(3-(4-(4-(4-(l-(2,6-dioxopiperidin-3- yl)-3-methyl-2-oxo-2,3-dihydro-lH-benzo[d]imidazol-5-yl)but-3-yn-l-yl)piperidin-l- yl)pyridin-3-yl)azetidine-l-carbonyl)-5-oxooctahydro-lH-pyrrolo[l,2-a]azepin-6- yl)carbamoyl)benzo[b]thiophen-5-yl)fluoromethyl)phosphonic acid
Figure imgf000193_0001
[00610] Compound 40 is the phosphoric acid version of Compound 39.
[00611] *H NMR (400 MHz, DMSO) 5 11.11 (s, 1H), 8.76 - 8.66 (m, 1H), 8.51 - 8.25 (m, 2H), 8.21 (d, J= 11.6 Hz, 1H), 8.04 - 7.93 (m, 2H), 7.51 (d, J= 7.9 Hz, 1H), 7.27 - 7.16 (m, 2H), 7.12 - 7.05 (m, 2H), 5.79 (dd, J= 44.5, 8.0 Hz, 1H), 5.41 - 5.34 (m, 1H), 4.79 - 4.65 (m, 1H), 4.45 - 4.35 (m, 2H), 4.29 - 4.24 (m, 1H), 4.15 - 4.09 (m, 1H), 3.98 - 3.93 (m, 2H), 3.60
- 3.56 (m, 2H), 3.35 - 3.31 (m, 3H), 3.08 - 3.00 (m, 2H), 2.92 - 2.84 (m, 1H), 2.76 - 2.58 (m, 3H), 2.47 - 2.43 (m, 1H), 2.24 - 2.14 (m, 1H), 2.09 - 1.64 (m, 14H), 1.60 - 1.48 (m, 2H), 1.37
- 1.20 (m, 2H).. 19F NMR (377 MHz, DMSO) 5 -194.50 - -194.82 (m). 31P NMR (162 MHz, DMSO) 5 11.13 - 10.62 (m). (TFA salt). LCMS: Rt =1.641 min, 993.4 (M+H)+
[00612] Biochemical and Cellular Assays
[00613] STAT3 Fluorescence Polarization (FP) Assay
[00614] An FP assay was developed to determine IC50 values for test substances. Recombinant STAT3 protein (STAT3(G127-I722)) at 25 nM was combined with a fluorescently labeled, phosphotyrosine peptide probe (5-FAM-GpYLPQTV-NH2) at 2 nM in FP buffer (10 mM HEPES pH 7.4, 50 mM NaCl, 1 mM EDTA, 0.05% Tween 20, 2 mM DTT). 50 pL of STAT3-probe mixture was added to serial diluted compounds in black, 96-well plates (Greiner BioOne 655076) to a final concentration of 1% DMSO. Reaction components were mixed, and FP was measured after 45-minute incubation at room temperature using a Tecan Spark multimode plate reader. FP signal (mP) was plotted against the log concentration of the test substances and IC50 values were calculated by nonlinear regression analysis using GraphPad Prism software. Results are shown in Table 1. For STAT3 FP assay, A = <100 nM; B = >100-1000 nM; C = >1-10 pM; and D = >10 pM.
[00615] STAT6 Fluorescence Polarization (FP) Assay [00616] An FP assay was developed to determine IC50 values for test substances. Recombinant STAT6 protein (STAT6(W123-T658)) at 250 nM was combined with a fluorescently labeled, phosphotyrosine peptide probe (S-FAM-ApYKPFQDLI-NFfc) at 2 nM in FP buffer (10 mM HEPES pH 7.4, 50 mM NaCl, 1 mM EDTA, 0.05% Tween 20, 2 mM DTT). 50 pL of STAT6-probe mixture was added to serial diluted compounds in black, 96- well plates (Greiner BioOne 655076) to a final concentration of 1% DMSO. Reaction components were mixed, and FP was measured after 45 -minute incubation at room temperature using a Tecan Spark multimode plate reader. FP signal (mP) was plotted against the log concentration of the test substances and IC50 values were calculated by nonlinear regression analysis using GraphPad Prism software. Results are shown in Table 1. For STAT6 FP assay, A = <300 nM; B = >300-3000 nM; C = >3-30 pM; and D = >30 pM.
Figure imgf000194_0001
[00617] MSD-pSTAT-PBMC Assay
[00618] Materials:
[00619] Cryopreserved Peripheral Blood Mononuclear Cells (PBMC) are from AllCells. Recombinant Human IL-4 and IL-6 are from Peprotech. Mouse monoclonal anti-STAT3 antibody, rabbit monoclonal anti-pY705-STAT3 antibody, rabbit monoclonal Anti-pY641- STAT6 antibody, and lysis buffer are from Cell Signaling Technology (CST). Mouse monoclonal anti-STAT6 antibody is from BioLegend. Assay plates, blocker, and anti-rabbit secondary antibody are from Meso Scale Discovery (MSD).
[00620] Assay Method:
[00621] Cryopreserved PBMCs were thawed out and allowed to recover overnight in IMDM +10% heat-inactivated FBS prior to plating 50,000 (STAT3) or 25,000 (STAT6) cells per well in 96-well U-bottom tissue culture plates. Cells were treated with compound for 3hrs, then stimulated with lOng/mL IL-6 (STAT3) or 1 ng/mL IL-4 (STAT6) for lOmin. Cells were then spun down and washed with ice-cold PBS prior to lysing the cell pellet with lx lysis buffer (CST) with lx HALT protease and phosphatase inhibitor cocktail (Thermo). Lysates were transferred to and incubated overnight at 4 °C with shaking in QuickPlex 96-well high bind assay plates (MSD) pre-coated overnight with 30 pL per well of 0.6 pg/mL mouse monoclonal anti-STAT3 antibody (STAT3) or 2 pg/mL mouse monoclonal anti-STAT6 antibody (STAT6) in lx PBS, and pre-blocked for 1 hour with 3% Blocker-A (MSD). Captured protein in the assay plates were then washed and probed with 25 pL per well of 0.25 pg/ml rabbit monoclonal anti-pY705-STAT3 antibody (STAT3) or 0.18 pg/ml rabbit monoclonal Anti-pY641-STAT6 antibody (STAT6) in 1% Blocker-A for 1 hour at room temperature with shaking, then washed and probed with 25ul per well of lug/ml Sulfo-TAG Labeled Goat Anti-Rabbit Antibody (MSD) in 1% Blocker-A for 1 hour at room temperature with shaking. Assay plates were then washed and 150 pL of lx Read Buffer-T (MSD) was added to each well prior to reading on an SQ120 MSD Plate Reader. Assay signal from each sample was subtracted by the signal from unstimulated control wells and normalized to DMSO control wells. IC50 values were calculated using Graph Pad Prism Dose-Response Nonlinear Regression with variable slope. Results are shown in Table 2. For both pSTAT3 and pSTAT6 A = <100 nM; B = >100-1000 nM; C = >1000-3000 nM; and D = >3 pM.
Table 2
Figure imgf000195_0001
Figure imgf000196_0001
[00622] MSD-tSTAT-PBMC Assay
[00623] Materials:
[00624] Cryopreserved Peripheral Blood Mononuclear Cells (PBMC) for STAT3 assay are from AllCells and for STAT6 assay are from STEMCELL Technologies. Mouse monoclonal anti-STAT6 antibody is from BioLegend. The rabbit monoclonal anti-STAT6 antibody and cell lysis buffer are from Cell Signaling Technologies. Total STAT3 assay kit is from Meso Scale Discovery (MSD). Assay plates, Blocker A, Blocker D-R, Blocker D-M, and anti-rabbit secondary antibody for the total STAT6 assay is from Meso Scale Discovery (MSD).
[00625] Assay Method:
[00626] Cryopreserved PBMCs were thawed out and allowed to recover overnight in IMDM + 10% heat-inactivated FBS and IX Glutamax prior to plating 50,000 (STAT3) or 100,000 (STAT6) cells per well in a 96-well U-bottom tissue culture plate. Cells were treated with lOuM compound for 20 hours, then spun down and washed with ice-cold PBS prior to lysing the cell pellet with IX lysis buffer (CST) supplemented with IX HALT protease and phosphatase inhibitor cocktail (Thermo). Cells were then frozen at -80C, thawed, and incubated with shaking at 4C for 1 hour to allow cellular lysis. For the total STAT3 (tSTAT3) assay, assay ready plates (MSD) pre-blocked for 1 hour with 3% Blocker A (MSD) were used. Then, cell lysates were transferred to and incubated overnight at 4C with shaking in QuickPlex 96- well high bind assay plates (MSD). For the total STAT6 (tSTAT6) assay, assay plates were pre-coated overnight with 30ul per well of 2ug/mL mouse monoclonal anti-STAT6 antibody (BioLegend) in IX PBS, and pre-blocked for 1 hour with 3% Blocker A (MSD). Then, cell lysates were transferred to and incubated for 72 h at 4C with shaking in QuickPlex 96-well high bind assay plates (MSD). Following protein capture on the assay plates, plates were washed and probed with appropriate antibody. For the STAT3 assay, 25ul SULFO-tag conjugated anti-total STAT3 antibody in 1% Blocker A/0.1% Blocker D-M/0.1% Blocker D- R (MSD) was added and plates were incubated for 1 hr with shaking at room temperature. For the STAT6 assay, 25ul per well of 0.25ug/mL rabbit monoclonal anti-STAT6 antibody (CST) in 1% Blocker A was added and plates were incubated for 1 hour at room temperature with shaking, then washed and probed with 25ul per well of lug/mL Sulfo-TAG labeled Goat antiRabbit Antibody (MSD) in 1% Blocker A for 1 hour at room temperature with shaking. Assay plates were then washed and 150ul of IX Read Buffer-T (MSD) was added to each well prior to reading on an SQ120 MSD Plate Reader. Assay signal from each sample was subtracted by the signal from control wells and normalized to DMSO control wells to calculate percent control and percent degradation. Each condition was run in duplicate across two separate assays and values were averaged. Results are shown in Table 3. For both tSTAT3 and tSTAT6 A = >85% degradation; B = >70%-85% degradation; C = 50%-70% degradation; and D = <50% degradation.
Table 3
Figure imgf000198_0001
[00627] While we have described a number of embodiments, it is apparent that our basic examples may be altered to provide other embodiments that utilize the compounds and methods of this invention. Therefore, it will be appreciated that the scope of this invention is to be defined by the appended claims rather than by the specific embodiments that have been represented by way of example.
[00628] The contents of all references (including literature references, issued patents, published patent applications, and co-pending patent applications) cited throughout this application are hereby expressly incorporated herein in their entireties by reference. Unless otherwise defined, all technical and scientific terms used herein are accorded the meaning commonly known to one with ordinary skill in the art.

Claims

CLAIMS:
1. A compound having the structural Formula I:
Figure imgf000200_0001
or a pharmaceutically acceptable salt thereof, wherein: q is 0 or 1 and t is 0, 1, or 2, provided that at least one of q or t is 1; p is 1 or 2; the dotted line represents a single or double bond;
R1 is selected from an 8- to 10-membered fused bicyclic heteroaryl substituted with - CRlaR2aP(O)ORlbOR2b or -CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an 8- to 10-membered fused bicyclic heterocyclyl substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], an aryl substituted with CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], a -(Ci-C4)alkyl(aryl) wherein said aryl portion of - (Ci-C4)alkyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT], and a -(C2-C4)alkenyl(aryl) wherein said aryl portion of -(C2-C4)alkenyl(aryl) is substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb][NH(AA)C(O)ORT];
Rla and R2a are each absent or are independently selected from hydrogen, cyano, (Ci- C4)alkyl, hydroxy(Ci-C4)alkyl and fluoro; or Rla and R2a taken together with the carbon they are attached form oxo;
Rlb and R2b are each absent or are independently selected from hydrogen, (Ci- C4)alkyl, halo(Ci-C4)alkyl, -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-C(O)O- [(Ci-C4)alkyl], -[(Ci-C4)alkyl]-0-[(Ci-C2o)alkyl], -[(Ci-C4)alkyl]-OC(O)-[halo(Ci-C4)alkyl], [(Ci-C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl], [(Ci-C4)alkyl]-OC(O)-[5- to 7- membered heterocyclyl], -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]-OC(O)- [(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]- OC(O)O-[halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl]-OH, -[(Ci-C4)alkyl]- OC(O)O-[(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl], -[(Ci- C4)alkyl]-SC(O)-[halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[(Ci-C4)alkyl]-OH, -[(Ci- C4)alkyl]-SC(O)-[(Ci-C4)alkyl]-O-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)NH(Ci-C4)alkyl], - [(Ci-C4)alkyl]-OC(O)N[(Ci-C4)alkyl]2, 5- to 6- membered heteroaryl, and aryl, wherein said 5- to 6- membered heteroaryl and aryl are each optionally and independently substituted with, as valency permits, 1 to 2 groups selected from halo, cyano, and (Ci-C4)alkyl and wherein said 5- to 7-membered heterocyclyl of [(Ci-C4)alkyl]-OC(O)O-[5- to 7-membered heterocyclyl] and [(Ci-C4)alkyl]-OC(O)-[5- to 7-membered heterocyclyl] are each optionally and independently substituted with, as valency permits 1 to 2 groups selected from C(O)ORh;
R2 is selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, cyano, and hydroxyl;
R3 and R4 are each independently selected from hydrogen, halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, -(Ci-C4)alkyl(Ci-C4)alkoxy, hydroxyl, cyano, -NRaRb, phenyl, (C3-Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl, wherein said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rs; or R3 and R4 are taken together on the same carbon atom to form a (C3-Ce)cycloalkyl or a 4- to 6-membered heterocyclyl each optionally substituted with, as valency permits, 1 to 3 groups selected from halo, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, and halo(Ci- C4)alkoxy;
R5 and R6 are each independently selected from hydrogen and (Ci-C4)alkyl;
R7 is selected from E, -R10AE, (Ci-C4)alkyl, phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RY and said phenyl, 4- to 9-membered monocyclic or bicyclic heterocyclyl, and 5- to 10- membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, R11 and/or 1 to 3 groups selected from Rz; or
R6 and R7 together with the nitrogen atom to which they are attached form a 4- to 14- membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with, as valency permits, R12 and/or 1 to 3 groups selected from RQ;
R10A, R1OB, R1OC, and R10D are each independently a chemical spacer unit; R11 is selected from -NHC(O)R10BE, -OR10BE, phenyl, (C3-C6)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR10BE, -NHR10BE, -[N(Ci-C4)alkyl]R10BE, or R10BE, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
R12 is selected from -NHC(0)RlocE, -OR10CE, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR10CE, -NHR10CE, -[N(Ci-C4)alkyl]RlocE, or R10CE, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
R13 is selected from -NHC(O)R10DE, -OR10DE, phenyl, (C3-Ce)cycloalkyl, 5- to 6- membered heteroaryl, and 4- to 6-membered heterocyclyl each of said phenyl, (C3- Ce)cycloalkyl, 5- to 6-membered heteroaryl, and 4- to 6-membered heterocyclyl being substituted with -OR10DE, -NHR10DE, -[N(Ci-C4)alkyl]R10DE, or R10DE, and wherein said 4- to 6-membered heterocyclyl is optionally substituted further with oxo;
E is a chemical moiety that binds to E3 ligase;
AA is the residue of an alpha or beta natural or non-natural amino acid;
RT is selected from (Ci-C4)alkyl, benzyl, and phenyl, wherein said phenyl is optionally substituted with 1 or 2 groups selected from halo, (Ci-C4)alkyl, and halo(Ci- C4)alkyl;
RQ is selected from halo, (C2-C4)alkenyl, (Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, phenyl, hydroxyl, 4- to 6-membered heterocyclyl, 5- to 10-membered monocyclic or bicyclic heteroaryl, (C3-Ce)cycloalkyl, oxo, imino, -O(phenyl), -C(O)Rg, - C(O)ORe, -NHC(0)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, - S(O)NReRf, and -S(O)2NReRf, wherein said (C2-C4)alkenyl and (Ci-C4)alkyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RM, and wherein said phenyl, 5- to 10- membered monocyclic or bicyclic heteroaryl, (C3-Ce)cycloalkyl, and 4- to 6-membered heterocyclyl are each optionally and independently substituted with, as valency permits, 1 to 3 groups selected from RF;
RY is selected from halo, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, cyano, -C(O)Rg, - C(O)ORe, -NHC(0)Re, -NRaRb, -S(O)ReRf, -S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, - S(O)2NReRf, hydroxyl, phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RJ and RM are each independently selected from halo, (Ci-C4)alkoxy, halo(Ci- C4)alkoxy, cyano, -C(O)Rg, -C(O)ORe, -NHC(O)Re, -C(O)NRcRd, -NRaRb, -S(O)ReRf, - S(O)2Rf, -S(O)NReRf, -S(O)=NH(Ci-C4)alkyl, -S(O)2NReRf, hydroxyl, phenyl, 4- to 6- membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl, wherein said phenyl, 4- to 6-membered heterocyclyl, and 5- to 10-membered monocyclic or bicyclic heteroaryl are each optionally substituted with, as valency permits, 1 to 3 groups selected from Rx;
RF, RS, and Rx are each independently selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, -(Ci-C4)alkyl(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, (C2-C4)alkenyl, halo(C2-C4)alkenyl, (C2-C4)alkynyl, halo(C2-C4)alkynyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxyl, oxo, imino, phenyl, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci- C4)alkyl, -S(O)NReRf, and -S(O)2NReRf, -C(O)ORe, -NRcC(O)Re, -C(O)Rg, -C(O)NRcRd, and -NRaRb, wherein said phenyl and said phenyl for the group -(Ci-C4)alkylphenyl are each optionally and independently substituted with, as valency permits 1 to 3 groups selected from halo, cyano, (Ci-Cio)alkyl, (C2-Cio)alkenyl, (C2-Cio)alkynyl, halo(Ci-Cio)alkyl, (Ci- Cio)alkoxy, and halo(Ci-Cio)alkoxy, wherein said (Ci-Cio)alkyl, (C2-Cio)alkenyl and (C2- Cio)alkynyl are each optionally substituted with, as valency permits a 5 -to 10-membered monocyclic or bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl each of said 5-to 10-membered monocyclic and bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl being optionally substituted with oxo or a 5 - to 7- membered heterocyclyl that is optionally substituted with 1 to 2 oxo;
Rz is selected from halo, cyano, (Ci-C4)alkyl, (Cs-Cecycloalkyl), halo(Ci-C4)alkyl, - (Ci-C4)alkyl(Ci-C4)alkoxy, hydroxy(Ci-C4)alkyl, -(Ci-C4)alkylphenyl, -(Ci- C4)alkylheteroaryl, (C2-C4)alkenyl, halo(C2-C4)alkenyl, (C2-C4)alkynyl, halo(C2-C4)alkynyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, -ORe, oxo, imino, phenyl, 4- to 6-membered heterocyclyl, -S(O)ReRf, -S(O)2Rf, -S(O)=NH(Ci-C4)alkyl, -S(O)NReRf, and -S(O)2NReRf, -C(O)ORe, - NRcC(O)Re, -(Ci-C4alkyl)C(O)Rg, -C(O)Rg, -(Ci-C4alkyl)C(O)NRcRd, -C(O)NRcRd, -NO2, and -NRaRb, wherein the (Ci-C4)alkyl is optionally substituted with cyano, wherein said phenyl, said 4- to 6-membered heterocyclyl, and said phenyl for -(Ci-C4)alkylphenyl are each optionally and independently substituted with, as valency permits R13 and/or 1 to 3 groups selected from halo, cyano, oxo, (Ci-Cio)alkyl, (C2-Cio)alkenyl, (C2-Cio)alkynyl, halo(Ci- Cio)alkyl, (Ci-Cio)alkoxy, and halo(Ci-Cio)alkoxy, wherein said (Ci-Cio)alkyl, (C2- Cio)alkenyl and (C2-Cio)alkynyl are each optionally substituted with, as valency permits a 5- to 10-membered monocyclic or bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl each of said 5-to 10-membered monocyclic and bicyclic heteroaryl or a 4-to 10-membered monocyclic or bicyclic heterocyclyl being optionally substituted with oxo or a 5- to 7-membered heterocyclyl that is optionally substituted with 1 to 2 oxo;
Ra, Rb, Rc, Rd, Re, R1' Rg, and Rh are each independently selected from, as valency permits, hydrogen, (Ci-C4)alkyl, phenyl, (C3-Ce)cycloalkyl, 4- to 6-membered heterocyclyl and 5- to 6-membered heteroaryl, wherein said (Ci-C4)alkyl is optionally substituted with, as valency permits, 1 to 3 groups selected from RJ, and said phenyl, (C3-Ce)cycloalkyl, 4- to 6- membered heterocyclyl, and 5- to 6-membered heteroaryl are each independent! sy optionally substituted with, as valency permits, 1 to 3 groups selected from halo, cyano, (Ci-C4)alkyl, halo(Ci-C4)alkyl, (Ci-C4)alkoxy, halo(Ci-C4)alkoxy, hydroxyl, phenyl, and benzyl.
2. The compound of Claim 1, or a pharmaceutically acceptable salt thereof, wherein, R6 and R7 together with the nitrogen atom to which they are attached form a 4- to 14-membered monocyclic or bicyclic heterocyclyl or a 5- to 12-membered monocyclic or bicyclic heteroaryl, each of which being optionally substituted with R12 and/or, as valency permits, optionally further substituted with 1 to 3 groups selected from RQ.
3. The compound of Claim 1 or 2, or pharmaceutically acceptable salt thereof, wherein the compound is of the structural Formula II:
Figure imgf000204_0001
4. The compound of any one of Claims 1 to 3, or pharmaceutically acceptable salt thereof, wherein the compound is of the structural HI, IV, V, or VII:
[00629]
Figure imgf000205_0001
5. The compound of any one of Claims 1 to 4, or pharmaceutically acceptable salt thereof, wherein the compound is of the structural VIII, VIII’, IX, X, XI, XII, or XIII:
Figure imgf000205_0002
6. The compound of any one of Claims 1 to 5, or pharmaceutically acceptable salt thereof, wherein the compound is of the structural XIV, XV, XVI, XVI’, XVII, XVIII, XX, XXI, XXII, XXIII, XXIV, XXV, XXVI, xxvn, or XXVIII:
Figure imgf000206_0001
7. The compound of any one of Claims 1 to 6, or pharmaceutically acceptable salt thereof, wherein the compound is of the structural Formula XXX, XXXI, XXXII, XXXIII XXXIV, XXXV, XXXVI, or XXVII:
Figure imgf000207_0001
8. The compound of any one of Claims 1 to 7, or pharmaceutically acceptable salt thereof, wherein R3 is selected from hydrogen, (Ci-C4)alkyl, hydroxyl, (Ci-C4)alkoxy, -(Ci- C4)alkylphenyl, and 4- to 6-membered heterocyclyl; or R3 and R4 are taken together on the same carbon atom to form a (C3-C6)cycloalkyl.
9. The compound of any one of Claims 1 to 8, or pharmaceutically acceptable salt thereof, wherein R4 is selected from hydrogen (Ci-C4)alkyl, and hydroxyl; or R3 and R4 are taken together on the same carbon atom to form a (C3-C6)cycloalkyl.
10. The compound of any one of Claims 1 to 9, or pharmaceutically acceptable salt thereof, wherein R3 is selected from hydrogen, (Ci-C2)alkyl, hydroxyl, (Ci-C2)alkoxy, benzyl, and azetidinyl; or R3 and R4 are taken together on the same carbon atom to form a cyclopropyl.
11. The compound of any one of Claims 1 to 10, or pharmaceutically acceptable salt thereof, wherein R3 and R4 are hydrogen.
12. The compound of any one of Claims 1 to 11, or pharmaceutically acceptable salt thereof, wherein R2 is selected from hydrogen and hydroxyl.
13. The compound of any one of Claims 1 to 12, or pharmaceutically acceptable salt thereof, wherein R2 is hydrogen.
14. The compound of any one of Claims 1 to 13, or pharmaceutically acceptable salt thereof, wherein R5 is hydrogen.
15. The compound of any one of Claims 1 to 14, or pharmaceutically acceptable salt thereof, wherein R1 is selected from 8- to 10-membered fused bicyclic heteroaryl and aryl, each of which are substituted with -CRlaR2aP(O)ORlbOR2b or - CRlaR2aP(O)[ORlb] [NH(AA)C(O)ORT] .
16. The compound of any one of Claims 1 to 15, or pharmaceutically acceptable salt thereof, wherein, R1 is selected from benzothiophenyl, indolyl, and naphthalenyl, each of which are substituted with -CRlaR2aP(O)ORlbOR2b or -
CRlaR2aP(O)[ORlb] [NH(AA)C(O)ORT] .
17. The compound of any one of Claims 1 to 16, or pharmaceutically acceptable salt
Figure imgf000209_0001
thereof, wherein, R1 is selected from, ,
Figure imgf000209_0002
18. The compound of any one of Claims 1 to 17, or pharmaceutically acceptable salt thereof, wherein,
Figure imgf000209_0003
19. The compound of any one of Claims 1 to 18, or pharmaceutically acceptable salt thereof, wherein Rla is hydrogen and R2a is fluoro or Rla is fluoro and R2a is fluoro.
20. The compound of any one of Claims 1 to 19, or pharmaceutically acceptable salt thereof, wherein Rla and R2a are fluoro.
21. The compound of any one of Claims 1 to 20, or pharmaceutically acceptable salt thereof, wherein Rlb and R2b are each independently selected from hydrogen, (Ci-C4)alkyl, - [(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-OC(O)O-[(Ci-C4)alkyl], -[(Ci- C4)alkyl]-SC(O)-[(Ci-C4)alkyl], -[(Ci-C4)alkyl]-SC(O)-[halo(Ci-C4)alkyl], -[(Ci-C4)alkyl]- SC(O)-[(Ci-C4)alkyl]-OH, phenyl, pyridinyl, and naphthalenyl, wherein said phenyl, pyridinyl, and naphthalenyl are each optionally and independently substituted with cyano.
22. The compound of any one of Claims 1 to 21, or pharmaceutically acceptable salt thereof, wherein Rlb and R2b are each -[(Ci-C4)alkyl]-OC(O)-[(Ci-C4)alkyl],
23. The compound of any one of Claims 1 to 21, or pharmaceutically acceptable salt thereof, wherein Rlb and R2b are hydrogen.
24. The compound of any one of Claims 1 to 18 and 21, or pharmaceutically acceptable
Figure imgf000210_0001
Figure imgf000211_0001
25. The compound of any one of Claims 1 to 18 and 21, or pharmaceutically acceptable
Figure imgf000211_0002
salt thereof, wherein -CRlaR2aP(O)ORlbOR2b is selected from
Figure imgf000211_0003
26. The compound of any one of Claims 1 to 25, or pharmaceutically acceptable salt thereof, wherein R6 and R7 together with the nitrogen atom to which they are attached form a 4- to 9-membered monocyclic or bicyclic heterocyclyl substituted with R12 and/or, as valency permits, optionally further substituted with 1 to 3 groups selected from RQ.
27. The compound of any one of Claims 1 to 26, or pharmaceutically acceptable salt thereof, wherein R6 and R7 together with the nitrogen atom to which they are attached form pyrrolidinyl, azetidinyl, or 4-azaspiro[2.4]heptanyl, each substituted with R12 and/or, as valency permits, optionally further substituted with 1 to 3 groups selected from RQ.
28. The compound of any one of Claims 1 to 27, or pharmaceutically acceptable salt thereof, wherein RQ is cyano or 5- to 7-membered heteroaryl.
29. The compound of any one of Claims 1 to 28, or pharmaceutically acceptable salt thereof, wherein RQ is cyano or pyridinyl.
30. The compound of any one of Claims 1 to 29, or pharmaceutically acceptable salt thereof, wherein R12 is selected from -NHC(O)R10CE, -OR10CE, phenyl, pyridinyl, and pyridin-2(lH)-one, each substituted with R10CE, -OR10CE, -NH R10CE, or -[N(Ci- C4)alkyl]RlocE.
31. The compound of any one of Claims 1 to 30, or pharmaceutically acceptable salt thereof, wherein R10C is selected from (Ci-Cio)alkylene and (C2-Cio)alkynelene each optionally substituted with one or more groups selected from halo and oxo, and wherein said (Ci-Ce)alkylene and (C2-Cio)alkynelene may also be optionally interrupted by one or more heteroatoms selected from S, N, and O, and/or optionally interrupted by one or more rings selected from 5- to 7-membered heteroaryl, (C3-Ce)cycloakyl, phenyl, and 4- to 7-membered heterocyclyl.
32. The compound of any one of Claims 1 to 31, or pharmaceutically acceptable salt thereof, wherein R10C is selected from (Ci-Cio)alkylene, (C2-Cio)alkynelene, - (CH2)mC(O)NH[(CH2)O]v(CH2)n, -(CH2)O[(CH2)O]v(CH2)n, -(C2-C8)alkynelene[4- to 7- membered heterocyclyl], 4- to 7-membered heterocyclyl, [(CH2)O]v(CH2)n, and - (CH2)nC(O)NH[4- to 7-membered heterocyclyl], wherein m, n, and v are each independently selected from 0, 1, 2, 3, 4, 5, and 6.
33. The compound of any one of Claims 1 to 32, or pharmaceutically acceptable salt
Figure imgf000213_0001
thereof, wherein R10C is selected from:
Figure imgf000213_0002
Figure imgf000213_0003
and > , wherein the asterisk indicates the position to which E is attached.
34. The compound of any one of Claims 1 to 33, or pharmaceutically acceptable salt thereof, wherein E is selected from a CRBN, VHL, IAP, or MDM2 based E3 binder.
35. The compound of any one of Claims 1 to 34, or pharmaceutically acceptable salt
Figure imgf000213_0004
thereof, wherein E is selected from
Figure imgf000213_0005
Figure imgf000214_0001
wherein:
Y and Y1 are each independently is O or CEE;
D is O, NH, or a bond;
U is absent or C(O); and R is halo or cyano.
36. The compound of any one of Claims 1 to 35, or pharmaceutically acceptable salt thereof, wherein E is selected from
Figure imgf000214_0002
37. The compound of Claim 1, or pharmaceutically acceptable salt thereof, wherein the compound is selected from
Figure imgf000214_0003
Figure imgf000215_0001
Figure imgf000216_0001
Figure imgf000217_0001
Figure imgf000218_0001
Figure imgf000219_0001
Figure imgf000220_0001
Figure imgf000221_0001
Figure imgf000222_0001
Figure imgf000223_0001
Figure imgf000224_0001
Figure imgf000225_0001
38. A pharmaceutically acceptable composition comprising the compound of any one of Claims 1 to 37, or a pharmaceutically acceptable salt thereof; and a pharmaceutically acceptable carrier.
39. A method of treating a condition responsive to the modulation of STAT3 or STAT6 in a subject comprising administering to the subject a therapeutically effective amount of the compound of any one of Claims 1 to 37 or a pharmaceutically acceptable salt thereof, or the pharmaceutically acceptable composition of Claim 38.
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