WO2024218207A1 - Thieno[3,2-b]pyridine derivatives - Google Patents
Thieno[3,2-b]pyridine derivatives Download PDFInfo
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- WO2024218207A1 WO2024218207A1 PCT/EP2024/060533 EP2024060533W WO2024218207A1 WO 2024218207 A1 WO2024218207 A1 WO 2024218207A1 EP 2024060533 W EP2024060533 W EP 2024060533W WO 2024218207 A1 WO2024218207 A1 WO 2024218207A1
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- thieno
- methyl
- pyridazin
- pyridine
- imidazo
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D519/00—Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P25/00—Drugs for disorders of the nervous system
- A61P25/28—Drugs for disorders of the nervous system for treating neurodegenerative disorders of the central nervous system, e.g. nootropic agents, cognition enhancers, drugs for treating Alzheimer's disease or other forms of dementia
Definitions
- the present invention relates to new organic compounds useful for therapy and/or prophylaxis in a mammal, and in particular to compounds that reduce the protein level of huntingtin (HTT) and which are useful in the treatment of Huntington’s disease.
- HTT huntingtin
- the present invention relates to a compound of formula (I) wherein
- R 1 and R 2 are independently selected from hydrogen and alkyl; or R 1 and R 2 together with the carbon atom they are attached to, form cycloalkyl;
- R 3 is hydrogen, halogen, alkyl, alkoxy, haloalkyl or haloalkoxy;
- R 4 is hydrogen, alkyl or halogen
- a 1 is -N- or -CH-; or a pharmaceutically acceptable salt thereof.
- Huntington’s Disease is an inherited autosomal dominant neurodegenerative disease caused due to a CAG bases repeat expansion in the huntingtin (HTT) gene.
- HTT huntingtin
- the triplet repeat expansion in the exon 1 of the HTT gene translates into a polyglutamine repeat in the HTT protein which is prone to misfolding and aggregating in the cells. While the exact mechanisms of how mutant HTT disrupts cellular function is unclear, several processes ranging from interruption of RNA translation, toxic RNA species, protein aggregates, RNA translation, and stress granules have been implicated. At a neural circuit level, HD has been shown to affects deep brains structures like the striatum as well as cortical regions to different extents.
- HD typically manifests around 30-50 years of age characterized by a multitude of symptoms spanning the motor, cognitive and affective domains eventually leading to death in 10- 20 years after the onset of motor symptoms.
- CAG repeat length negatively correlates with age of onset of motor symptoms, however this only accounts for 50-70% of the variance in age of onset.
- Lee et al. 2019, Huntington's disease onset is determined by length of uninterrupted CAG, not encoded polyglutamine, and is modified by DNA maintenance mechanisms.
- Bioarxiv doi: https://doi.Org/10. l 101/529768) conducted a large GWAS (genome-wide association study) that has uncovered additional genetic modifiers of age of onset.
- mice have been characterized to model aspects of HD.
- the YAC128 mice expressing the full length mutant HTT transgene with 128 CAG repeats
- BACHD mice expressing the full length mutant HTT genomic sequence with 97 CAG/CAA repeats
- the R6/2 mice expressing exon 1 of the mutant human HTT gene with 110-135 CAG repeats.
- the human transgene there are also a series of mouse models, like the frequently used Ql l l, the Q175 knock in mice where the expanded repeats are knocked-in in the context of the mouse HTT locus.
- HTT lowering is a promising therapeutic approach that aims to slow disease progression by getting at the core cause of Huntington’s Disease.
- HTT lowering is thought to be transformative when treated in the premanifest or manifest stages of disease onset, thus preventing major neurodegenerative processes in the brain.
- the challenge lies in identifying the patients at the right disease stage, as age of onset is quite variable across the population (S. J. Tabrizi, R. Ghosh, B. R. Leavitt, Neuron, 2019, 102(4), 899).
- ASOs antisense oligonucleotides
- SNP single-nucleotide polymorphism
- zinc finger based gene editing approaches are investigated. While the use of small molecules to lower HTT expression has been postulated, this strategy has not yet been validated and none has proved successful so far.
- Small molecules provide an opportunity to allow for HTT lowering in the brain as well as the periphery.
- a small molecule modality allows access to patient populations that could be difficult to reach with modalities like ASOs or gene therapy.
- the compounds of the invention are active in lowering mHTT, as well as wild-type HTT, by modifying the splicing of said gene.
- the compounds of the present invention are useful in the treatment of HD.
- the compounds of the present invention provide favourable selectivity over known off-targets of splicing modifiers, and thus a higher therapeutic window when compared with non-selective splicing modifiers.
- One known off-target of small molecule splice modifiers is for instance FOXM1 that is a key cell cycle regulator.
- Particular undesired splice variants of FOXM1 are comprising exon9 (also known as exon A2) insertions, such as for instance deltaC2 and the variant comprising full-length exon A2.
- alkyl signifies a linear or branched saturated hydrocarbon group of 1 to 8 carbon atoms, in particular of 1 to 6 carbon atoms and more particular of 1 to 4 carbon atoms.
- straight-chain and branched-chain C1-C8 alkyl groups are for instance methyl, ethyl, propyl, isopropyl, butyl, isobutyl, tert.-butyl, the isomeric pentyls, the isomeric hexyls, the isomeric heptyls and the isomeric octyls.
- Particular examples of “alkyl” are methyl, ethyl and isopropyl. Methyl and ethyl are particular examples of “alkyl” in the compound of formula (I).
- alkoxy or “alkyloxy”, alone or in combination, signifies a group of the formula alkyl-O- in which the term "alkyl” has the previously given significance.
- alkoxy are for instance methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, isobutoxy, sec-butoxy and tert.- butoxy.
- alkoxy is methoxy.
- halogen or “halo”, alone or in combination, signifies fluorine, chlorine, bromine or iodine and particularly fluorine, chlorine or bromine.
- fluorine is fluorine.
- halo in combination with another group, if not otherwise specified, denotes the substitution of said group with at least one halogen, particularly substituted with one to five halogens, particularly one to four halogens, i.e. one, two, three or four halogens.
- haloalkyl denotes an alkyl group substituted with at least one halogen, particularly substituted with one to five halogens, particularly one to three halogens.
- Particular “haloalkyl” are fluoromethyl, trifluoromethyl, difluoromethyl, fluoroethyl, fluoropropyl and fluorobutyl. Further particular “haloalkyl” are difluoromethyl and tri fluoromethyl.
- salts refers to those salts which retain the biological effectiveness and properties of the free bases or free acids, which are not biologically or otherwise undesirable.
- the salts are formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, particularly hydrochloric acid, and organic acids such as formic acid, acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid, N-acetylcystein and trifluoroacetic acid.
- inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, particularly hydrochlor
- salts derived from an inorganic base include, but are not limited to, the sodium, potassium, lithium, ammonium, calcium, magnesium salts.
- Salts derived from organic bases include, but are not limited to salts of primary, secondary, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines and basic ion exchange resins, such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, ethanolamine, lysine, arginine, N- ethylpiperidine, piperidine, polyamine resins.
- the compound of formula (I) can also be present in the form of zwitterions.
- Particularly preferred pharmaceutically acceptable salts of compounds of formula (I) are the salts formed with formic acid, trifluoroacetic acid or hydrochloric acid.
- protecting groups as described e.g. in “Protective Groups in Organic Chemistry” by T. W. Greene and P. G. M. Wuts, 3rd Ed., 1999, Wiley, New York
- protecting groups can be introduced before the critical step applying methods well known in the art.
- Such protecting groups can be removed at a later stage of the synthesis using standard methods described in the literature. Examples of protecting groups are tert-butoxy carbonyl (Boc), trityl (Trt), 2, 4.
- Dmb dimethoxybenzyl
- Fmoc 9-fluorenylmethyl carbamate
- Teoc 2-trimethylsilylethyl carbamate
- Cbz carbobenzyl oxy
- Moz p-methoxybenzyloxycarbonyl
- a particular example of a protecting group is tert-butoxy carbonyl (Boc).
- a certain embodiment of the invention relates to the compound of formula (I) as described herein, or a pharmaceutically acceptable salt thereof, wherein at least one substituent comprises at least one radioisotope.
- radioisotopes are 2 H, 3 H, 13 C, 14 C and 18 F.
- the invention includes the compound of formula (I) as described herein, or a pharmaceutically acceptable salt thereof, wherein the compound comprises at least one radioisotope.
- radioisotopes are 2 H, 3 H, 13 C, 14 C and 18 F.
- the invention includes all optical isomers, i.e. diastereoisomers, diastereomeric mixtures, racemic mixtures, all their corresponding enantiomers and/or tautomers as well as their solvates, wherever applicable, of the compound of formula (I).
- the compound of formula (I) may contain one or more asymmetric centers and can therefore occur as racemates, racemic mixtures, single enantiomers, diastereomeric mixtures and individual diastereomers. Additional asymmetric centers may be present depending upon the nature of the various substituents on the molecule. Each such asymmetric center will independently produce two optical isomers and it is intended that all of the possible optical isomers and diastereomers in mixtures and as pure or partially purified compounds are included within this invention. The present invention is meant to encompass all such isomeric forms of these compounds. The independent syntheses of these diastereomers or their chromatographic separations may be achieved as known in the art by appropriate modification of the methodology disclosed herein.
- Their absolute stereochemistry may be determined by the x-ray crystallography of crystalline products or crystalline intermediates which are derivatized, if necessary, with a reagent containing an asymmetric center of known absolute configuration.
- racemic mixtures of the compounds may be separated so that the individual enantiomers are isolated. The separation can be carried out by methods well known in the art, such as the coupling of a racemic mixture of compounds to an enantiomerically pure compound to form a diastereomeric mixture, followed by separation of the individual diastereomers by standard methods, such as fractional crystallization or chromatography.
- asymmetric carbon atom means a carbon atom with four different substituents. According to the Cahn-Ingold-Prelog Convention an asymmetric carbon atom can be of the “R” or “S” configuration.
- the invention thus also relates in particular to:
- R 1 and R 2 are both hydrogen; or R 1 and R 2 together with the carbon atom which they are attached to, form cycloalkyl;
- R 1 and R 2 are both hydrogen; or R 1 and R 2 together with the carbon atom which they are attached to, form cyclopropyl; A compound according to the invention, wherein R 1 and R 2 are both hydrogen;
- R 3 is hydrogen, methyl, methoxy, fluoro, trifluoromethyl, difluoromethoxy or trifluoromethoxy;
- R 3 is hydrogen, methyl, fluoro or tri fluoromethyl
- R 3 is difluoromethoxy or tri fluoromethoxy
- R 4 is hydrogen, methyl, fluoro or chloro
- a compound according to the invention wherein Ai is -N-;
- a compound according to the invention wherein Ai is -CH-;
- the compound of formula (I) is 2-(4-azaspiro[2.5]octan-7-yl)-6-(8-methoxy-2-methyl-imidazo[l,2-b]pyridazin-6- yl)thieno[3,2-b]pyridine, or a pharmaceutically acceptable salt thereof.
- the compound of formula (I) is 2-(4- Azaspiro[2.5]octan-7-yl)-6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridine, or a pharmaceutically acceptable salt thereof.
- the compound of formula (I) is 2-(4- Azaspiro[2.5]octan-7-yl)-6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridine.
- the compound of formula (I) is 2-[(7R)-4- Azaspiro[2.5]octan-7-yl]-6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridine.
- the compound of formula (I) is 2-[(7S)-4- Azaspiro[2.5]octan-7-yl]-6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridine.
- the compound of formula (I) is 2-[(7R)-4- Azaspiro[2.5]octan-7-yl]-6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridine, or a pharmaceutically acceptable salt thereof.
- the compound of formula (I) is 2-[(7S)-4- Azaspiro[2.5]octan-7-yl]-6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridine, or a pharmaceutically acceptable salt thereof.
- the compound of formula (I) is 2-(4- Azaspiro[2.5]octan-7-yl)-6-[2-methyl-8-(trifluoromethoxy)imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridine, or a pharmaceutically acceptable salt thereof.
- the invention thus also relates to a process for the preparation of a compound according to the invention, comprising at least one of the following steps:
- the solvent can be for instance 1,4-di oxane, acetonitrile, THF, DMF or mixtures of the mentioned solvents and water.
- the base can be for instance tri ethylamine, Na2CO3 or K2CO3.
- the palladium catalyst can be for instance Pd(dppf)C12 or XPhos Pd G3.
- step (a) the dioxaborolanyl is optionally substituted with one to four substituents independently selected from methyl, ethyl and isopropyl.
- dioxaborolanyl can be for instance pinacolatoboron, methyliminodiacetic acid (MID A) boronate; in step (a) B(0R)2 can also be BF3K.
- step (a) is performed between around 70 to 130 °C, in particular between around 80 to around 120 °C, wherein the solvent is a mixture of 1,4-dioxane and water, the base is K2CO3 or tri ethylamine and the palladium catalyst is Pd(dppf)C12 or XPhos Pd G3.
- the solvent is a mixture of 1,4-dioxane and water
- the base is K2CO3 or tri ethylamine
- the palladium catalyst is Pd(dppf)C12 or XPhos Pd G3.
- the solvent can be for instance EtOAc, EtOH, MeOH, THF or a mixture thereof.
- the catalyst can be for instance Pd/C, Pt/C or PtCF.
- step (b) is performed between around 10 to 70 °C, in particular between around 20 to around 60 °C, wherein the solvent is EtOAc and the catalyst is Pd/C.
- the solvent can be for instance 1,4-dioxane, EtOAc, THF, MeOH, EtOH or water or a mixture thereof.
- the solvent can also be DCM depending on the structure of the protecting group.
- suitable conditions can be for instance a suitable acid or a suitable base.
- the solvent is a suitable organic solvent such as for instance 1,4- dioxane or DCM, and the acid is HC1 or TFA.
- the solvent is a suitable organic solvent
- the base is suitable organic base such as for instance a primary or a secondary amine, in particular the base is piperidine.
- the protection group can be for instance BOC, TRT, FMOC, TEOC, DMB, CBZ or MOZ, in particular BOC.
- the invention also relates to a compound according to the invention when manufactured according to a process of the invention.
- the invention thus also relates in particular to:
- a compound according to the invention for use as therapeutically active substance A pharmaceutical composition comprising a compound according to the invention and a therapeutically inert carrier;
- a compound according to the invention for use in the treatment or prophylaxis of Huntington’s disease is a compound according to the invention for use in the treatment or prophylaxis of Huntington’s disease
- a method for the treatment or prophylaxis of a neurodegenerative disease, in particular Huntington’s disease which method comprises administering an effective amount of a compound according to the invention to a patient in need thereof;
- a method for lowering mutant HTT which method comprises administering an effective amount of a compound according to the invention to a patient in need thereof.
- a certain embodiment of the invention relates to a pharmaceutical composition
- a pharmaceutical composition comprising the compound of formula (I) as described herein, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable auxiliary substance.
- structures depicted herein are also meant to include compounds that differ only in the presence of one or more isotopically enriched atoms.
- one or more hydrogen atoms are replaced by deuterium (2H), or one or more carbon atoms are replaced by a 13C- or 14C-enriched carbon are within the scope of this invention.
- the invention includes all optical isomers, i.e. diastereoisomers, diastereomeric mixtures, racemic mixtures, all their corresponding enantiomers and/or tautomers as well as their solvates, wherever applicable, of the compound of formula (I).
- the compound of formula (I) may contain one or more asymmetric centers and can therefore occur as racemates, racemic mixtures, single enantiomers, diastereomeric mixtures and individual diastereomers. Additional asymmetric centers may be present depending upon the nature of the various substituents on the molecule.
- Each such asymmetric center will independently produce two optical isomers and it is intended that all of the possible optical isomers and diastereomers in mixtures and as pure or partially purified compounds are included within this invention.
- the present invention is meant to encompass all such isomeric forms of these compounds.
- the independent syntheses of these diastereomers or their chromatographic separations may be achieved as known in the art by appropriate modification of the methodology disclosed herein.
- Their absolute stereochemistry may be determined by the x-ray crystallography of crystalline products or crystalline intermediates which are derivatized, if necessary, with a reagent containing an asymmetric center of known absolute configuration. If desired, racemic mixtures of the compounds may be separated so that the individual enantiomers are isolated.
- the separation can be carried out by methods well known in the art, such as the coupling of a racemic mixture of compounds to an enantiomerically pure compound to form a diastereomeric mixture, followed by separation of the individual diastereomers by standard methods, such as fractional crystallization or chromatography.
- optically pure enantiomer means that the compound contains > 90 % of the desired isomer by weight, particularly > 95 % of the desired isomer by weight, or more particularly > 99 % of the desired isomer by weight, said weight percent based upon the total weight of the isomer(s) of the compound.
- Chirally pure or chirally enriched compounds may be prepared by chirally selective synthesis or by separation of enantiomers. The separation of enantiomers may be carried out on the final product or alternatively on a suitable intermediate.
- an embodiment of the present invention is a compound of formula (I) as described herein, when manufactured according to any one of the described processes.
- the compound of formula (I) or a pharmaceutically acceptable salt thereof can be used as a medicament (e.g. in the form of a pharmaceutical preparation).
- the pharmaceutical preparation can be administered internally, such as orally (e.g. in the form of tablets, coated tablets, dragees, hard and soft gelatin capsules, solutions, emulsions or suspensions), nasally (e.g. in the form of nasal sprays), rectally (e.g. in the form of suppositories) or topical ocularly (e.g. in the form of solutions, ointments, gels or water soluble polymeric inserts).
- the administration can also be effected parenterally, such as intramuscularly, intravenously, or intraocularly (e.g. in the form of sterile injection solutions).
- the compound of formula (I) or a pharmaceutically acceptable salt thereof can be processed with pharmaceutically inert, inorganic or organic adjuvants for the production of tablets, coated tablets, dragees, hard gelatin capsules, injection solutions or topical formulations Lactose, corn starch or derivatives thereof, talc, stearic acid or its salts etc. can be used, for example, as such adjuvants for tablets, dragees and hard gelatin capsules.
- Suitable adjuvants for soft gelatin capsules are, for example, vegetable oils, waxes, fats, semi-solid substances and liquid polyols, etc.
- Suitable adjuvants for the production of solutions and syrups are, for example, water, polyols, saccharose, invert sugar, glucose, etc.
- Suitable adjuvants for injection solutions are, for example, water, alcohols, polyols, glycerol, vegetable oils, etc.
- Suitable adjuvants for suppositories are, for example, natural or hardened oils, waxes, fats, semi-solid or liquid polyols, etc.
- Suitable adjuvants for topical ocular formulations are, for example, cyclodextrins, mannitol or many other carriers and excipients known in the art.
- the pharmaceutical preparation can contain preservatives, solubilizers, viscosityincreasing substances, stabilizers, wetting agents, emulsifiers, sweeteners, colorants, flavorants, salts for varying the osmotic pressure, buffers, masking agents or antioxidants.
- the pharmaceutical preparation can also contain still other therapeutically valuable substances.
- the dosage can vary in wide limits and will be fitted to the individual requirements in each particular case.
- the formulation can contain 0.001% to 15% by weight of medicament and the required dose, which can be between 0.1 and 25 mg in can be administered either by single dose per day or per week, or by multiple doses (2 to 4) per day, or by multiple doses per week It will, however, be clear that the upper or lower limit given herein can be exceeded when this is shown to be indicated.
- the compound of formula (I) or a pharmaceutically acceptable salt thereof can be used as a therapeutically active substance, e.g. in the form of a pharmaceutical preparation.
- the pharmaceutical preparation can be administered orally, e.g. in the form of tablets, coated tablets, dragees, hard and soft gelatin capsules, solutions, emulsions or suspensions.
- the administration can, however, also be effected rectally, e.g. in the form of suppositories, or parenterally, e.g. in the form of injection solutions.
- the compound of formula (I) or a pharmaceutically acceptable salt thereof can be processed with pharmaceutically inert, inorganic or organic carriers for the production of a pharmaceutical preparation.
- Lactose, corn starch or derivatives thereof, talc, stearic acids or its salts and the like can be used, for example, as such carriers for tablets, coated tablets, dragees and hard gelatin capsules.
- Suitable carriers for soft gelatin capsules are, for example, vegetable oils, waxes, fats, semi-solid and liquid polyols and the like. Depending on the nature of the active substance no carriers are however usually required in the case of soft gelatin capsules.
- Suitable carriers for the production of solutions and syrups are, for example, water, polyols, glycerol, vegetable oil and the like.
- Suitable carriers for suppositories are, for example, natural or hardened oils, waxes, fats, semi- liquid or liquid polyols and the like.
- the pharmaceutical preparation can, moreover, contain pharmaceutically acceptable auxiliary substances such as preservatives, solubilizers, stabilizers, wetting agents, emulsifiers, sweeteners, colorants, flavorants, salts for varying the osmotic pressure, buffers, masking agents or antioxidants. They can also contain still other therapeutically valuable substances.
- pharmaceutically acceptable auxiliary substances such as preservatives, solubilizers, stabilizers, wetting agents, emulsifiers, sweeteners, colorants, flavorants, salts for varying the osmotic pressure, buffers, masking agents or antioxidants. They can also contain still other therapeutically valuable substances.
- Medicaments containing a compound of formula (I) or a pharmaceutically acceptable salt thereof and a therapeutically inert carrier are also provided by the present invention, as is a process for their production, which comprises bringing a compound of formula (I) and/or pharmaceutically acceptable salts thereof and, if desired, one or more other therapeutically valuable substances into a galenical administration form together with one or more therapeutically inert carriers.
- the dosage can vary within wide limits and will, have to be adjusted to the individual requirements in each particular case.
- the dosage for adults can vary from about 0.01 mg to about 1000 mg per day of a compound of general formula (I) or of the corresponding amount of a pharmaceutically acceptable salt thereof.
- the daily dosage may be administered as single dose or in divided doses and, in addition, the upper limit can also be exceeded when this is found to be indicated.
- compositions according to the invention are:
- the compound of formula (I), lactose and corn starch are firstly mixed in a mixer and then in a comminuting machine.
- the mixture is returned to the mixer; the talc is added thereto and mixed thoroughly.
- the mixture is filled by machine into suitable capsules, e.g. hard gelatin capsules.
- Example C The compound of formula (I) is dissolved in a warm melting of the other ingredients and the mixture is filled into soft gelatin capsules of appropriate size. The filled soft gelatin capsules are treated according to the usual procedures.
- Example C The compound of formula (I) is dissolved in a warm melting of the other ingredients and the mixture is filled into soft gelatin capsules of appropriate size. The filled soft gelatin capsules are treated according to the usual procedures.
- the suppository mass is melted in a glass or steel vessel, mixed thoroughly and cooled to 45°C. Thereupon, the finely powdered compound of formula (I) is added thereto and stirred until it has dispersed completely.
- the mixture is poured into suppository moulds of suitable size, left to cool; the suppositories are then removed from the moulds and packed individually in wax paper or metal foil.
- the compound of formula (I) is dissolved in a mixture of Polyethylene Glycol 400 and water for injection (part).
- the pH is adjusted to 5.0 by acetic acid.
- the volume is adjusted to 1.0 ml by addition of the residual amount of water.
- the solution is filtered, filled into vials using an appropriate overage and sterilized.
- the compound of formula (I) is mixed with lactose, microcrystalline cellulose and sodium carboxymethyl cellulose and granulated with a mixture of polyvinylpyrrolidone in water.
- the granulate is mixed with magnesium stearate and the flavoring additives and filled into sachets.
- Step 1 6-bromothieno[3,2-b]pyridine 1
- a mixture of tert-butyl N-(3-thienyl)carbamate (CAS No: 19228-91-2) (20.0 g, 100.37 mmol, 1.0 eq) and 2-bromomalonaldehyde (16.67 g, 110.4 mmol, 1.1 eq) in acetic acid (200 mL) was stirred at 100 °C for 20 hours.
- the reaction was concentrated to dryness and the residue was taken into EtOAc, the organics was washed with aqueous Na2CC>3, and saturated brine. The organics phase was then separated and dried (MgSCL) before concentration.
- Step 2 6-bromo-2-iodo-thieno [3, 2-b] pyridine
- Step 1 Preparation of 8-bromo-6-chloro-2-methyl-imidazoll,2-b1pyridazine
- Step 3 Preparation of 8-methoxy-2-methyl-6-(4A5,5-tetramethyl-L3,2-dioxaborolan-2- yl)imidazorL2-b]pyridazine:
- Step 3 Preparation of 2-methyl-6-(4A5,5-tetramethyl-L3,2-dioxaborolan-2-yl)-8- (trifluoromethyl)imidazolL2-b1pyridazine:
- 6- chloro-2-methyl-8-(trifluoromethyl)imidazo[l,2-b]pyridazine 300 mg, 1.2 mmol
- bis(pinacolato)diboron 364.7 mg, 1.44 mmol
- potassium acetate 352.42 mg, 3.59 mmol
- 1,4-dioxane 12 mL
- the yellowish fine suspension was stirred and degassed with Argon for 10-15 minutes before tetrakis(triphenylphosphine)palladium (CAS No: 14221-01-3) (69.1 mg, 0.060 mmol) was added.
- the vial was sealed and stirred in a heating block (Temperature: 100 °C) for 22 hours. Further addition of tetrakis(triphenylphosphine)palladium (69 mg, 0.060 mmol), after 90 minutes, 3.5 hours and 6 hours. The reaction was cooled to room temperature, filtered off and concentrated in vacuo. The amber viscous oil was purified by column chromatography to give 2-methyl-6-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-8- (trifluoromethyl)imidazo[l,2-b]pyridazine (428 mg, 48%) as yellow viscous oil. The obtained product could either be present as a boronic ester, boronic acid or mixtures thereof.
- Step 3 (8-methoxy-2-methylimidazo[l,2-b]pyridazin-6-yl)boronic acid
- Step 4 tert-butyl 4-(6-bromothieno[3,2-b]pyridin-2-yl)-3,6-dihydro-2H-pyridine-l- carboxylate
- Step 5 tert-butyl 4-(6-(8-methoxy-2-methylimidazo[l,2-b]pyridazin-6-yl)thieno[3,2-b] pyri- din-2-yl)-3,6-dihydropyridine-l(2H)-carboxylate
- Step 6 tert-butyl 4-(6-(8-methoxy-2-methylimidazo[l,2-b]pyridazin-6-yl)thieno[3,2-b] pyri- din-2-yl)piperidine-l-carboxylate
- Step 7 6-(8-Methoxy-2-methyl-imidazo [1 ,2-b] pyridazin-6-yl)-2-(4-piperidyl)thieno [3,2- b] pyridine formic acid
- Step 1 4- [6- [2-methyl-8-(trifluoromethyl)imidazo [1 ,2-b] pyridazin-6-yl] thieno [3,2- b]pyridin-2-yl]-3,6-dihydro-2H-pyridine-l-carboxylic acid tert-butyl ester
- Step 2 4- [6- [2-methyl-8-(trifluoromethyl)imidazo [1 ,2-b] pyridazin-6-yl] thieno [3,2- b]pyridin-2-yl]piperidine-l-carboxylic acid tert-butyl ester
- Step 1 tert-Butyl 7-(((trifluoromethyl)sulfonyl)oxy)-4-azaspiro[2.5]oct-6-ene-4-carboxylate
- Step 2 tert-Butyl 7-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-4-azaspiro[2.5]oct-6-ene- 4-carboxylate
- Step 3 tert-Butyl 7-(6-bromothieno[3,2-b]pyridin-2-yl)-4-azaspiro[2.5]oct-6-ene-4- carboxylate
- Step 4 tert-Butyl 7-(6-(8-methoxy-2-methylimidazo[l,2-b]pyridazin-6-yl)thieno[3,2- b]pyridin-2-yl)-4-azaspiro[2.5]oct-6-ene-4-carboxylate
- Step 5 tert-Butyl 7-(6-(8-methoxy-2-methylimidazo[l,2-b]pyridazin-6-yl)thieno[3,2- b]pyridin-2-yl)-4-azaspiro[2.5]octane-4-carboxylate
- Step 6 6-(8-Methoxy-2-methylimidazo[l,2-b]pyridazin-6-yl)-2-(4-azaspiro[2.5]octan-7- yl)thieno[3,2-b]pyridine trifluoroacetic acid (alternative chemical name: 6-(8-methoxy-2- methylimidazo [1,2-b] pyridazin-6-yl)-2-(4-azaspiro [2.5] octan-7-yl)thieno [3,2-b] pyridine)
- Step 1 4- [6-(2,8-dimethylimidazo [1,2-b] pyridazin-6-yl)thieno [3,2-b] pyridin-2-yl]-3,6- dihydro-2H-pyridine-l-carboxylic acid tert-butyl ester
- Step 2 4-[6-(2,8-dimethylimidazo[l,2-b]pyridazin-6-yl)thieno[3,2-b]pyridin-2-yl]piperidine- 1-carboxylic acid tert-butyl ester
- 4-[6-(2,8-dimethylimidazo[l,2-b]pyridazin-6-yl)thieno[3,2-b]pyridin-2-yl]-3,6- dihydro-2H-pyridine-l -carboxylic acid tert-butyl ester (97 mg, 0.210 mmol, 1.000 eq) in methanol (9.7 mL) and di chloromethane (9.7 mL) was degassed by three vacuum / argon cycles.
- Step 3 6-(2,8-dimethylimidazo[l,2-b]pyridazin-6-yl)-2-(4-piperidyl)thieno[3,2-b]pyridine
- Step 2 tert-butyl 4-(6-(2-methylimidazo[l,2-b]pyridazin-6-yl)thieno[3,2-b]pyridin-2- yl)piperidine-l-carboxylate
- Step 3 6-(2-methylimidazo[l,2-b]pyridazin-6-yl)-2-(piperidin-4-yl)thieno[3,2-b]pyridine (alternative chemical name: 6-(2-methylimidazo[l,2-b]pyridazin-6-yl)-2-(piperidin-4- yl)thieno [3,2-b] pyridine)
- Step 1 tert-butyl 4-(6-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)thieno[3,2-b]pyridin-2- yl)-3,6-dihydropyridine-l(2H)-carboxylate
- Step 2 tert-butyl 4-(6-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)thieno[3,2-b]pyridin-2- yl)piperidine-l-carboxylate
- Step 3 6-(8-fluoro-2-methyl-imidazo[l,2-a]pyridin-6-yl)-2-(4-piperidyl)thieno[3,2- bjpyridine (alternative chemical name: 6-(8-fluoro-2-methylimidazo[l,2-a]pyridin-6-yl)-2- (piperidin-4-yl)thieno [3,2-b] pyridine)
- Step 1 tert-Butyl (R)-7-(6-(8-methoxy-2-methylimidazo[l,2-b]pyridazin-6-yl)thieno[3,2- b]pyridin-2-yl)-4-azaspiro[2.5]octane-4-carboxylate and tert-butyl (S)-7-(6-(8-methoxy-2- methylimidazo[l,2-b]pyridazin-6-yl)thieno[3,2-b]pyridin-2-yl)-4-azaspiro[2.5]octane-4- carboxylate
- First eluted enantiomer (presume Pl) is tert-butyl (R)-7-(6-(8-methoxy-2-methylimidazo[l,2- b]pyridazin-6-yl)thieno[3,2-b]pyridin-2-yl)-4-azaspiro[2.5]octane-4-carboxylate (310 mg, 0.61 mmol, 26.17% yield) with light yellow solid.
- Second eluted enantiomer (presume P2) is tert-butyl (S)-7-(6-(8-methoxy-2-methylimidazo[l,2- b]pyridazin-6-yl)thieno[3,2-b]pyridin-2-yl)-4-azaspiro[2.5]octane-4-carboxylate (305 mg, 0.6 mmol, 20.6% yield) with also light yellow solid.
- Step 2a 2- [(7R)-4-azaspiro [2.5] octan-7-yl]-6-(8-methoxy-2-methyl-imidazo [1,2-b] pyridazin- 6-yl)thieno [3, 2-b] pyridine (example 7, putative assignment of enantiomer)
- Step 2b 2-[(7S)-4-azaspiro[2.5]octan-7-yl]-6-(8-methoxy-2-methyl-imidazo[l,2-b]pyridazin- 6-yl)thieno [3, 2-b] pyridine (example 8, putative assignment of enantiomer)
- Step 1 tert-butyl 7-[6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridin-2-yl]-4-azaspiro[2.5]oct-6-ene-4-carboxylate
- Step 2 tert-butyl 7-[6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridin-2-yl]-4-azaspiro[2.5]octane-4-carboxylate
- Step 3 2-(4-azaspiro[2.5]octan-7-yl)-6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2- b] pyr idazin-6-yl] thieno [3,2-b] pyridine
- Step 1 (7R)-7-[6-[8-(Difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6-yl]thieno[3,2- b]pyridin-2-yl]-4-azaspiro[2.5]octane-4-carboxylic acid tert-butyl ester and (7S)-7-[6-[8- (difluoromethoxy)-2-methyl-imidazo [1,2-b] pyridazin-6-yl]thieno [3,2-b] pyridin-2-yl]-4- azaspiro[2.5]octane-4-carboxylic acid tert-butyl ester tert-butyl 7-[6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2-b]pyridazin-6-yl]thieno[3,2- b]pyridin-2-yl]-4-azaspiro
- Step 2a 2-[(7R)-4-azaspiro[2.5]octan-7-yl]-6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2- b] pyr idazin-6-yl] thieno [3,2-b] pyridine
- Step 2b 2-[(7S)-4-azaspiro[2.5]octan-7-yl]-6-[8-(difluoromethoxy)-2-methyl-imidazo[l,2- b] pyridazin-6-yl]thieno [3,2-b] pyridine
- Step 1 tert-Butyl 7-[6-[2-methyl-8-(trifluoromethoxy)imidazo[l,2-b]pyridazin-6-yl]thieno[3,2- b]pyridin-2-yl]-4-azaspiro[2.5]oct-6-ene-4-carboxylate
- Step 2 tert-Butyl 7-[6-[2-methyl-8-(trifhioromethoxy)imidazo[L2-b]pyridazin-6-yl]thieno[3,2- b]pyridin-2-yl]-4-azaspiro[2.5]octane-4-carboxylate
- Step 3 2-(4-Azaspiro[2.5]octan-7-yl)-6-[2-methyl-8-(trifluoromethoxy)imidazo[l,2-b]pyridazin- 6-yl]thieno[3,2-b]pyridine
- tert-butyl 7-[6-[2-methyl-8-(trifluoromethoxy)imidazo[l,2-b]pyridazin-6- yl]thieno[3,2-b]pyridin-2-yl]-4-azaspiro[2.5]octane-4-carboxylate 23.0 mg, 0.04 mmol, 1.0 eq
- DCM 3 mL
- 4N hydrogen chloride solution in 1, 4-di oxane (3.0 mL, 12.0 mmol, 291.97 eq) the mixture was stirred at 25 °C for 2 hours.
- the HTRF assay was adapted from Weiss et al. (Analytical Biochemistry Volume 395, Issue 1, 1 December 2009, Pages 8-15 and Analytical Biochemistry Volume 410, 2011, Pages 304-306) to cells from GENEAe020-A cell line (https://hpscreg.eu/cell-line/GENEAe020-A).
- GENEAe020-A cell line was derived by Genea Biocells from human blastocysts of HD donors. After assessing viability, cells were plated into 384 well collagen coated plates in growth media. Once cells adhered, media was removed and test compounds dissolved in DMSO were diluted with buffer solution and added to the adherent cells. Controls included experiments with no cells, DMSO with no compound, and Hsp90 inhibitor control. Cells were incubated with compounds and controls for 48 hours.
- the cells were lysed and transferred to an assay plate containing HTRF labeled monoclonal antibodies developed by Paul Patterson (Ko et al., Brain Research Bulletin, Volume 56, Numbers 3 and 4, 2001, Pages 319-329) which recognize specific areas of the HTT protein.
- the terbium labeled “donor” antibody (2B7) binds to the N-terminus of the HTT protein and the Alexa488 labeled “acceptor” antibody (MW1) is specific for the polyglutamine region of the protein. Binding of the acceptor labeled antibody is more efficient for the extended polyglutamine repeats of mutant HTT protein which translates into a signal boost which enables the specific measurement of mutant HTT protein level.
- the HTRF donor and acceptor detection reagents were incubated with the cell lysate and the ratio between the signals of the two fluorophores is indicative of the relative quantities of mHTT.
- Table 9 provides the ECso (half maximal effective concentration) values for the reduction of mHTT obtained for particular examples of the present invention as measured by HTRF assay (data shown below is mean from three replicates).
- Hs68 fibroblast cells obtained from European Collection of Authenticated Cell Culture (Cell line 89051701) were seeded at a density of 60’000 cells/cm 2 (100 pl cell suspension/well) in a 96 well plate in DMEM + 4.5 g Glucose (Gibco #31966) supplemented with 10% FBS (Thermo Fisher Scientific #A3160501), and placed in an incubator at 37°C with 10% CO2 and 85% humidity.
- Cells were treated directly after seeding. Compounds were prepared in serial dilutions starting with final highest concentration of IpM with a 1 :3 dilution to obtain a l l point concentration series. Control wells were treated with 0.1% DMSO. A volume of 100 pl of the diluted compounds were added to the cell culture plate. After a treatment period of 24 hours, the experiment was terminated by washing the cells with cold PBS and then adding 50 pL of lysis solution (Cells-to-CTTM Bulk Lysis Reagents, Thermo Fisher Scientific # 4391851C) with 5min incubation. The reaction was stopped with 5 pl of the stop solution provided in the kit.
- lysis solution Cells-to-CTTM Bulk Lysis Reagents, Thermo Fisher Scientific # 4391851C
- RT-qPCR reactions were processed on a Roche LightCycler LC480 Real-Time PCR System using 2 pl of the cell lysate in a 10 pl mixture containing 5 pl of the Ag-Path-ID One-Step RT-PCR (Applied Biosystems, AMI 005) buffer and 0.4 pl of the AmpliTaq Gold DNA Polymerase supplied in the kit, 0.1 pM of each forward and reverse primers listed in Table 8 and 0.04 pM of the probe (conjugated with FAM for the target and HEX for the housekeeping gene).
- the temperature cycle consisted of incubation at 48 °C for 15 minutes for the reverse transcription step, followed by reverse transcriptase inactivation at 95 °C during 10 minutes, 45 cycles of amplification (95°C for 15 seconds, 60 °C for 1 minute) and a cooling step at 4 °C during 15 seconds.
- the primer and probe sequences in Table 8 were used for the measurement of splice isoforms using Taqman assays.
- EIF4G1 was used as the housekeeping gene for all QPCR assays.
- the Taqman PCR data was acquired using a Light Cycler 480 (Roche Diagnostics) and Cp Values in txt-file for the two channels 465-510 [FAM] and 533-580 [HEX] were used for the analysis.
- the Cp value for the biological and technical replicates of the test gene (Cpl) housekeeping gene (Cp2) were calculated by automatic thresholding in the light cycler software (Lightcycler 480 Software release 1.5.1.62 SP3).
- the relative transcript level was calculated as follows
- AACp ACp(treatment condition)- ACp(control)
- Relative transcript level 2(-AACp)
- the concentration response curve was generated using the concentration of the test item as (X) and the relative transcript level as the response (Y).
- a and B are the bottom and top plateaus of the curve, C the EC50 (or IC50), and D the slope factor (Hill slope).
- EC50 is the concentration of the test item causing half the maximum response. Hill Slope describes the steepness of the curve. Top is the maximum response and Bottom is the minimum response on the Y axis. For HTT Exon 50 - NF, the top was set to 1 and the bottom to 0. For HTT Exon 50 LF and FOXMlex9i, the bottom was set to 0 and the top was constrained to the maximum observed value for that experiment.
- Table 9 Exemplary HTT reduction and FOXM1 e9i increase on protein and/or RNA level:
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| WO2015173181A1 (en) | 2014-05-15 | 2015-11-19 | F. Hoffmann-La Roche Ag | Compounds for treating spinal muscular atrophy |
| WO2019057740A1 (en) | 2017-09-22 | 2019-03-28 | F. Hoffmann-La Roche Ag | Process for the prepration of 7-(4,7-diazaspiro[2.5]octan-7-yl)-2-(2,8-dimethylimidazo[1,2-b]pyridazin-6-yl)pyrido[1,2-a]pyrimidin-4-one derivatives |
| WO2020005877A1 (en) * | 2018-06-27 | 2020-01-02 | Ptc Therapeutics, Inc. | Heteroaryl compounds for treating huntington's disease |
| WO2022194802A1 (en) | 2021-03-17 | 2022-09-22 | F. Hoffmann-La Roche Ag | New thiadiazolopyrimidone derivatives |
| WO2022194800A1 (en) * | 2021-03-17 | 2022-09-22 | F. Hoffmann-La Roche Ag | New thienopyrimidinone derivatives |
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| WO2015173181A1 (en) | 2014-05-15 | 2015-11-19 | F. Hoffmann-La Roche Ag | Compounds for treating spinal muscular atrophy |
| WO2019057740A1 (en) | 2017-09-22 | 2019-03-28 | F. Hoffmann-La Roche Ag | Process for the prepration of 7-(4,7-diazaspiro[2.5]octan-7-yl)-2-(2,8-dimethylimidazo[1,2-b]pyridazin-6-yl)pyrido[1,2-a]pyrimidin-4-one derivatives |
| WO2020005877A1 (en) * | 2018-06-27 | 2020-01-02 | Ptc Therapeutics, Inc. | Heteroaryl compounds for treating huntington's disease |
| WO2022194802A1 (en) | 2021-03-17 | 2022-09-22 | F. Hoffmann-La Roche Ag | New thiadiazolopyrimidone derivatives |
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| WO2025111408A1 (en) * | 2023-11-21 | 2025-05-30 | Biogen Ma Inc. | Compounds for treating spinal muscular atrophy and huntington's disease |
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