[go: up one dir, main page]

WO2024215776A1 - Polypeptide ace2 recombinant et utilisations associées - Google Patents

Polypeptide ace2 recombinant et utilisations associées Download PDF

Info

Publication number
WO2024215776A1
WO2024215776A1 PCT/US2024/023899 US2024023899W WO2024215776A1 WO 2024215776 A1 WO2024215776 A1 WO 2024215776A1 US 2024023899 W US2024023899 W US 2024023899W WO 2024215776 A1 WO2024215776 A1 WO 2024215776A1
Authority
WO
WIPO (PCT)
Prior art keywords
ace2
cell
polypeptide
expression
nedd4
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
PCT/US2024/023899
Other languages
English (en)
Inventor
Eric LAZARTIGUES
Catalin FILIPEANU
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Louisiana State University
Original Assignee
Louisiana State University
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Louisiana State University filed Critical Louisiana State University
Publication of WO2024215776A1 publication Critical patent/WO2024215776A1/fr
Anticipated expiration legal-status Critical
Pending legal-status Critical Current

Links

Classifications

    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00—Drugs for disorders of the cardiovascular system
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
    • A61K48/005—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy characterised by an aspect of the 'active' part of the composition delivered, i.e. the nucleic acid delivered
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
    • A61K48/0075—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy characterised by an aspect of the delivery route, e.g. oral, subcutaneous
    • A—HUMAN NECESSITIES
    • A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00—Medicinal preparations containing peptides
    • C—CHEMISTRY; METALLURGY
    • C07—ORGANIC CHEMISTRY
    • C07K—PEPTIDES
    • C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705—Receptors; Cell surface antigens; Cell surface determinants
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14—Hydrolases (3)
    • C12N9/48—Hydrolases (3) acting on peptide bonds (3.4)
    • C12N9/485—Exopeptidases (3.4.11-3.4.19)
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Y—ENZYMES
    • C12Y304/00—Hydrolases acting on peptide bonds, i.e. peptidases (3.4)
    • C12Y304/17—Metallocarboxypeptidases (3.4.17)
    • C12Y304/17023—Angiotensin-converting enzyme 2 (3.4.17.23)

Definitions

  • ACE2 Angiotensin converting enzyme 2
  • An aspect of the invention is directed to a recombinant human Angiotensin Converting Enzyme type 2 (ACE2) polypeptide or fragment.
  • ACE2 Angiotensin Converting Enzyme type 2
  • the recombinant polypeptide comprises one or more substitutions selected from the group consisting of K769R, K770R, K771R, K773R, or K787R. In embodiments, the recombinant polypeptide or fragment thereof is resistant to protein degradation.
  • the recombinant polypeptide or fragment thereof described herein comprises an amino acid sequence according to: MGVIVVGIVILIFTGIRDRRKKNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKRKNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKRNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKKNRARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKKNKARSGENPYASIDISRGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRRRRNRARSGENPYASIDISRGENNPGFQNTDDVQTSF, Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 or a sequence of at least 90% identity
  • the recombinant polypeptide or fragment thereof described herein consists of an amino acid sequence according to: MGVIVVGIVILIFTGIRDRRKKNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKRKNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKRNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKKNRARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKKNKARSGENPYASIDISRGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRRRRNRARSGENPYASIDISRGENNPGFQNTDDVQTSF, or a sequence of at least 90% identity thereto.
  • the recombinant polypeptide described herein comprises one or more post-translational modifications.
  • the recombinant polypeptide described herein exhibits at least one activity selected from the group consisting of resistance to ubiquitination, resistance to angiotensin II-induced degradation, enhanced enzymatic activity toward angiotensin formation, or increased cellular expression levels.
  • the recombinant polypeptide described herein is isolated from or secreted by a host cell.
  • the host cell is a mammalian cell, an insect cell, a yeast cell, or a bacterial cell.
  • aspects of the invention are also drawn to a nucleic acid encoding the recombinant polypeptide or fragment described herein.
  • aspects of the invention are drawn to a vector comprising the nucleic acid described herein.
  • aspects of the invention are also drawn to a cell comprising the nucleic acid described herein.
  • the cell is a mammalian cell, bacterial cell, yeast cell, or an insect cell.
  • aspects of the invention are drawn to a pharmaceutical composition
  • a pharmaceutical composition comprising the recombinant polypeptide described herein, the nucleic acid described herein, or the cell described herein, and a pharmaceutically acceptable carrier.
  • the pharmaceutical composition described herein further comprises at least one additional active agent.
  • aspects of the invention are also drawn to a method of treating a subject afflicted with a cardiovascular disease. In embodiments, the method comprises administering to the subject the recombinant polypeptide described herein, the nucleic acid described herein, the cell described herein, or the pharmaceutical composition described herein.
  • the cardiovascular disease comprises hypertension, type 2 diabetes, or heart failure.
  • aspects of the invention are drawn to a method of treating a subject afflicted with a pulmonary disease.
  • the method comprises administering to the subject the recombinant polypeptide described herein, the nucleic acid described herein, the cell described herein, or the pharmaceutical composition described herein.
  • the pulmonary disease comprises acute respiratory distress syndrome (ARDS) or COVID-19.
  • the administering is intracranially.
  • FIG.1 provides data showing ubiquitination reduces ACE2 expression and activity.
  • Panel A provides a representative blot showing the levels of ubiquitination of ACE2 in control HEK293T cells before and after Ang-II treatment.
  • the first two lanes are from Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 cells transfected with GFP-tagged ACE2, AT1R, HA-tagged ubiquitin, and pcDNA3.1, and the last two lanes are from cells transfected for 48 h, serum-starved for 24 h, and subsequently treated with (left) Ang-II (100 nM for 4 h) or Ang-II (100 nM) and losartan (1 ⁇ M) for 4 h. GFP was then immunoprecipitated from the cells, and immunoblotting was performed against HA, as described in the Methods section.
  • FIG.2 provides data showing predicted ACE2-interacting Nedd4-2 is up-regulated in hypertension.
  • Panel A provides bioinformatic analysis (UbiBrowser v1.0) showing E3 ubiquitin ligases predicted to interact with ACE2 based on E3 recognition motifs, network loops, and enriched gene ontology pairs.
  • Panel B provides a schematic showing identification of four potential Nedd4-2 (also known as NEDD4L) recognition motifs (green) in the amino acid sequence of ACE2. Close-by lysine residues (K) are highlighted as potential ubiquitination sites.
  • Panel C provides data showing changes in E3 ubiquitin ligase abundance identified by proteomic analysis from the hypothalamus of normotensive and Ang-II-infused mice from both sexes.
  • FIG.3 provides data showing ACE2 is ubiquitinated by Nedd4-2.
  • Panel C provides images showing subcellular localization of ACE2 and Nedd4-2 in HAEC in the absence (control) or presence of Ang-II (100 nM for 4 h).
  • Panel D provides representative pictures and capillary western analysis of Nedd4-2 and ACE2 expression in HAEC treated with Ang-II in the presence or absence of Nedd4-2 siRNA. Two-way ANOVA followed by Tukey’s test for multiple comparisons, except for Panel B (one-way ANOVA followed by Bonferroni’s test). Statistical significance: *P ⁇ 0.05, **P ⁇ 0.01, ***P ⁇ 0.001, and ****P ⁇ 0.0001. Scale bars are 10 ⁇ m. [0027] FIG.4 provides data showing ubiquitination-resistant ACE2. Panel A provides the amino acid sequence of the native ACE2 C-terminus and the six mutants ( ⁇ ) where lysine residues were replaced by arginine.
  • Panel B provides a graph showing ACE2 activity for WT and hACE2 mutants in the absence and presence of Ang-II (100 nM, 4 h).
  • Panel D provides a schematic showing the hACE2-5R (Mutant 6) adeno-associated viral vector. Two-way ANOVA.
  • FIG.5 provides data showing ACE2 is expressed on GABAergic neurons.
  • Panel A provides a schematic showing the injection protocol and representative expression of AAV-ChR2-eYFP in the dorsal (dBNST) and ventral (vBNST) bed nucleus of the stria terminalis. Scale bar: 200 ⁇ m.
  • Panel B provides immunohistochemistry pictures showing the co-localization of GABAergic neuron-targeted channelrhodopsin (ChR2) expression (green) with ACE2 (red).
  • ChR2 GABAergic neuron-targeted channelrhodopsin
  • FIG.7 provides a schematic of the role of ACE2 ubiquitination in neurogenic hypertension.
  • ACE2 is expressed on GABAergic neurons within the BNST where elevated Ang-II levels lead to Nedd4-2 up-regulation and ACE2 ubiquitination.
  • Ubiquitinated ACE2 is internalized and degraded, preventing the conversion of Ang-II to Ang-(1-7).
  • FIG.9 provides images showing HEK293T cells transfected with ACE2-GFP (green) and NEDD4-2 (red) in presence or absence of Ang-II. Scale bars are 10 ⁇ m.
  • FIG.10 provides a schematic showing predicted Nedd4L substrates obtained from the UbiBrowser database. Green circles point to sodium channels and glutamate receptors involved in hypertension. Retrieved substrates of E3 ligase: Nedd4-2.13 known substrates were retrieved (red).2262 predicted substrates were retrieved with high confidence, with the top 20 predicted substrates shown (blue).
  • FIG.11 provides a schematic showing the ACE2-mediated inhibitory signaling in the PVN microcircuits.
  • ACE2 Stimulation of ACE2 activity in peri-PVN regions converts Ang-II into Ang-(1-7) and enhances GABAergic signaling to the PVN region that inhibits neuronal activity of autonomic and neuroendocrine functions.
  • ACE2 blunts the activity of AT1R-containing neurons, which also contain CRH, ADAM17, Glutamate, and decreases the excitatory input to pre-autonomic neurons that project to the brainstem Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 cardiovascular nuclei (RVLM, NTS) and IML, leading to decreased sympathetic outflow.
  • ACE2 also directly influences oxytocin and vasopressin neurons in the PVN and modulates their neuroendocrine release in the circulation.
  • Color coding GABAergic neurons containing ACE2 (green), MasR (pink), AT2R (violet); gray-colored neurons represent pre- autonomic neurons containing ADAM17, glutamate and Sim1 along with GluR (blue), CRHR (violet).
  • a ACTH adrenocorticotropic hormone
  • ADAM17 metallopeptidase domain 17
  • AVP arginine vasopressin
  • FIG.12 provides a schematic showing ACE2 ubiquitination in neurogenic hypertension: a working model.
  • ACE2-5R expression in the BNST blocks Ang II-mediated ACE2 ubiquitination by Nedd4-2, thus stabilizing ACE2 compensatory activity in GABAergic neurons and reinforcing the inhibitory tone to PVN glutamatergic neurons.
  • FIG.13 provides data showing UBR1 and ACE2 expression are differentially regulated by sex hormones in Ang-II-mediated hypertension.
  • FIG.14 provides data showing UBR1 contributes to Ang-II mediated ACE2 degradation.
  • Human aortic endothelial cells were pre-treated with control or UBR1 siRNA for 6 hours before exposure to Ang-II (100 ng) for 4 hours.
  • Panel A provides representative immunoassays for ACE2, UBR1 and ⁇ -Tubulin.
  • Panel B provides data showing Ang-II induced a 2-fold increase in UBR1 levels that was blunted in cells pre-treated with UBR1 siRNA.
  • Ang-II induced a dramatic ( ⁇ 80%) decrease in ACE2 levels.
  • UBR1 knockdown did not affect basal expression of ACE2 but reversed the Ang-II mediated effect, resulting in an upregulation of ACE2 following Ang-II exposure.
  • Panel C provides images showing Gfp- labeled ACE2 (Green) localizes at the plasma membrane in control cells and internalizes to the cytoplasm after Ang-II treatment.
  • FIG.15 provides data showing UBR1 siRNA Infusion in Hypertensive Mice.
  • Mice BP was recorded using radiotelemetry probes at baseline and after 1 week of Ang-II infusion (600 ng/kg/min) (Panel A).
  • Experiment timeline of UBR1 siRNA infusion (Panel B).
  • FIG.16 provides a schematic showing that E3 ligases, DUB, and other agents regulating ACE2 ubiquitination. ACE2 ubiquitination leads to internalization and degradation in lysosomes and the proteasome.
  • ACE2 angiotensin-converting enzyme 2
  • AT1R angiotensin II type 1 receptor
  • AT2R angiotensin II type 2 receptor
  • DUB deubiquitinase
  • LPS lipopolysaccharides
  • MasR Mas receptor
  • Ub ubiquitin
  • Vit C vitamin C.
  • FIG.17 provides representative blot images showing ACE2 expression.
  • Panel A provides a representative blot image showing the levels of ubiquitination of ACE2 in control HEK293T cells before and after Ang-II treatment. The first two lanes are from cells transfected with GFP-tagged ACE2, AT1R, HA-tagged ubiquitin, and pcDNA3.1, and the last two lanes are from cells transfected for 48 h, serum-starved for 24 h, and subsequently treated with (left) Ang-II (100 nM for 4 h) or Ang-II (100 nM) and losartan (1 ⁇ M) for 4 h.
  • FIG.18 provides representative blot images showing Nedd4-2 expression, ACE2 expression, and GAPDH expression.
  • Panel A provides a representative blot image showing Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 Nedd4-2 expression in the brain, corresponding to FIG.17.
  • Panel B provides a representative blot image showing ACE2 expression in the brain, corresponding to FIG.17.
  • Panel C provides a representative blot image showing GAPDH expression in the brain, corresponding to FIG.17.
  • Panel D provides a representative blot image showing Nedd4-2 expression in the heart, corresponding to FIG.17.
  • Panel E provides a representative blot image showing ACE2 expression in the heart, corresponding to FIG.17.
  • Panel F provides a representative blot image showing GAPDH expression in the heart, corresponding to FIG.17.
  • Panel G provides a representative blot image showing Nedd4-2 expression in the kidney.
  • Panel H provides a representative blot image showing ACE2 expression in the kidney.
  • Panel I provides a representative blot image showing GAPDH expression in the kidney.
  • Panel J provides a representative blot image showing Nedd4-2 expression in human cardiac left ventricle.
  • Panel K provides a representative blot image showing ACE2 expression in human cardiac left ventricle.
  • Panel L provides a representative blot image showing GAPDH expression in human cardiac left ventricle.
  • FIG.19 provides representative blot images showing Nedd4-2 expression, ACE2 expression, and GAPDH expression.
  • Panel A provides a representative blot image showing ACE2 expression in HEK293T cells.
  • Panel B provides a representative blot image showing GAPDH expression in HEK293T cells.
  • Panel C provides a representative blot image showing Nedd4-2 expression in human aortic endothelial cells.
  • Panel D provides a representative blot image showing ACE2 expression in human aortic endothelial cells.
  • FIG.20 provides representative blot images showing Nedd4-2 expression, ACE2 expression, and GAPDH expression.
  • Panel A provides a representative blot image showing ACE2 expression in HEK293T cells.
  • Panel B provides a representative blot image showing GAPDH expression in HEK293T cells. Docket No.: 2932719-223WO1 Date of filing: April 10, 2024
  • FIG.21 provides representative blot images showing Nedd4-2 expression, ACE2 expression, and GAPDH expression.
  • Panel A provides a representative image showing Nedd4-2 expression in the mouse brain (bed nucleus of the stria terminalis).
  • Panel B provides a representative blot image showing ACE2 expression in the mouse brain (bed nucleus of the stria terminalis).
  • Panel C provides a representative blot image showing AT1 receptor expression in the mouse brain (bed nucleus of the stria terminalis).
  • Panel D provides a representative blot image showing Mas receptor expression in the mouse brain (bed nucleus of the stria terminalis).
  • Panel E provides a representative blot image showing MDM2 expression in the mouse brain (bed nucleus of the stria terminalis).
  • ACE2 and “angiotensin-converting enzyme 2” can refer to a carboxypeptidase which is a member of the renin–angiotensin system (RAS), primarily involved in the conversion of the vasoconstrictor octapeptide angiotensin (Ang)-II to the vasodilatory heptapeptide Ang-(1-7).
  • RAS renin–angiotensin system
  • ACE2 polypeptides [0054] Decreases in cellular ACE2 levels have been associated with cardiovascular diseases like hypertension and diabetes.
  • Ang-II type 1 receptor AT 1 R
  • AT 1 R Ang-II type 1 receptor
  • these latter mechanism may be associated with ubiquitination induced by elevated Ang-II levels.
  • Angiotensin Converting Enzyme type 2 (ACE2) protein (isoform 1, uniprot id: Q9BYF1): 1 msssswllls lvavtaaqst ieeqaktfld kfnheaedlf yqsslaswny ntniteenvq 61 nmnnagdkws aflkeqstla qmyplqeiqn ltvklqlqal qqngssvlse dkskrlntil 121 ntmstiystg kvcnpdnpqe clllepglne imansldyne rlwaweswrs evgkqlrply 181 eeyvvlknem aranhyedyg dywrgdyevn gvd
  • this mutant protein is resistant to ubiquitination and angiotensin II-induced degradation. Further, it was discovered that because the mutant protein cannot be degraded via ubiquitination, it displays an increased half-life and enhanced enzymatic activity toward formation of angiotensin(1-7), which is known to have beneficial effects on cardiovascular and pulmonary function. Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 Accordingly, aspects of the invention are drawn to recombinant ACE2 polypeptides and fragments thereof that comprise one or more substitutions selected from the group comprising of K769R, K770R, K771R, K773R, or K787R.
  • the term “recombinant” can refer to genetic material (i.e., nucleic acids, the polypeptides they encode, and vectors and cells comprising such polynucleotides) that has been modified to alter its sequence or expression characteristics, such as by mutating the coding sequence to produce an altered polypeptide (i.e., a polypeptide comprising one or more amino acid substitutions).
  • Recombinant nucleic acids, polypeptides, and cells based thereon have been manipulated by man such that they are not identical to related nucleic acids, polypeptides, and cells found in nature.
  • recombinant polypeptide can refer to a polypeptide that is produced by recombinant techniques, wherein DNA or RNA encoding the expressed protein is inserted into a suitable expression vector that is in turn used to transform a host cell to produce the polypeptide.
  • Routine methods for making recombinant nucleic acids can be used to construct expression vectors encoding the polypeptides of interest using appropriate transcriptional/translational control signals and the protein coding sequences. (See, for example, Sambrook et al., Molecular Cloning: A Laboratory Manual, 3d Ed. (Cold Spring Harbor Laboratory 2001)).
  • polypeptide can be used interchangeably herein and can refer to a polymer of amino acid residues.
  • the terms can apply to amino acid polymers in which one or more amino acid residue is an artificial chemical mimetic of a corresponding naturally occurring amino acid, as well as to naturally occurring amino acid polymers and non-naturally occurring amino acid polymer.
  • amino acid and “amino acid residue” can refer to natural amino acids, unnatural amino acids, and modified amino acids.
  • a polypeptide of the invention can be of a size of about 3 or more, 5 or more, 10 or more, 20 or more, 25 or more, 50 or more, 75 or more, 100 or more, 200 or more, 500 or more, 1,000 or more, or 2,000 or more amino acids.
  • Polypeptides can have a defined three- dimensional structure, although they do not necessarily have such structure.
  • Polypeptides with a defined three-dimensional structure are referred to as folded, and polypeptides which do not possess a defined three-dimensional structure, but rather can adopt a large number of different conformations, and are referred to as unfolded.
  • the invention encompasses ACE2 variants and fragments thereof that comprise one or more substitutions that, when compared to wild-type ACE2, are associated with increased activity and resistance to angiotensin (Ang)-II-mediated degradation.
  • Ang angiotensin
  • one or more lysine residues can substituted with arginine in order to generate the recombinant ACE2 polypeptide and fragments thereof described herein.
  • the one or more substitutions can be selected from a group consisting of K769R, K770R, K771R, K773R, K787R, K787R, or any combination thereof.
  • the one or more substitutions can be K769R/K770R/K771R/K773R/K787R/K787R.
  • the recombinant ACE2 polypeptide comprises an amino acid sequence according to: MGVIVVGIVILIFTGIRDRRKKNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKRKNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKRNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKKNRARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKKNKARSGENPYASIDISRGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRRRRNRARSGENPYASIDISRGENNPGFQNTDDVQTSF.
  • the ACE2 recombinant polypeptide or fragment thereof described herein is resistant to protein degradation.
  • protein degradation can refer to a natural process by which cells break down proteins that are damaged or no longer needed so they can be recycled or disposed of.
  • the recombinant polypeptide described herein is resistant or at least partially resistant to ubiquitination.
  • ubiquitination can refer to the attachment of the protein ubiquitin to lysine residues of other molecules.
  • Ubiquitination of a molecule can act as a signal for its rapid cellular degradation, and for targeting to the proteasome complex.
  • the process of ubiquitination involves a cascade of three enzymes, i.e., the ubiquitin activating enzyme (“E1”), the ubiquitin conjugating enzyme (“E2”), and the ubiquitin ligase (“E3”).
  • E1 the ubiquitin activating enzyme
  • E2 ubiquitin conjugating enzyme
  • E3 ubiquitin ligase
  • target protein modification through ubiquitination, occurs when ubiquitin is activated by E1, which then transfers the highly conserved ubiquitin molecules to an E2 intermediate.
  • E3- mediated ligation permits the covalent attachment of ubiquitin to a substrate.
  • the recombinant ACE2 polypeptide or fragment thereof can be referred to as an “isolated polypeptide”.
  • isolated can refer to a molecule of interest (such as, for example, a polynucleotide or a polypeptide) that is in an environment different from that in which the molecule was produced.
  • an “isolated” molecule is one which is substantially separated from the cellular components (e.g., membrane lipids, chromosomes, proteins) of the host cell from which it originated, or from the medium in which the host cell was cultured.
  • the term does not require that the biomolecule has been separated from all other chemicals or molecules, although certain isolated biomolecules can Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 be purified to near homogeneity.
  • an “isolated polypeptide” can refer to a polypeptide that is free from at least one contaminating polypeptide or other contaminants that are found in its natural environment.
  • the isolated polypeptide is substantially free from any other contaminating polypeptides or other contaminants that are found in its natural environment which can interfere with its therapeutic, diagnostic, prophylactic or research use.
  • the recombinant ACE2 polypeptide or fragment thereof exhibits at least one functional and/or biological activity of wildtype ACE2.
  • biological activity can refer to an in vivo activity, such as an activity within an organism or within a cell. Examples of such biological activities include, but are not limited to, resistance to ubiquitination, resistance to angiotensin II-induced degradation, enhanced enzymatic activity toward angiotensin formation, or increased cellular expression levels.
  • the enzymatic activity of the ACE2 mutants described herein is enhanced and resistant to the effects of Ang-II treatment.
  • the polypeptide or fragment thereof can be isolated from or secreted by a host cell, such as a host cell which comprises a nucleic acid encoding for and expressing the polypeptide or fragment thereof.
  • a host cell such as a host cell which comprises a nucleic acid encoding for and expressing the polypeptide or fragment thereof.
  • host cell such as a host cell which comprises a nucleic acid encoding for and expressing the polypeptide or fragment thereof.
  • host cell such as a host cell which comprises a nucleic acid encoding for and expressing the polypeptide or fragment thereof.
  • host cell such as a host cell which comprises a nucleic acid encoding for and expressing the polypeptide or fragment thereof.
  • host cell such as a host cell which comprises a nucleic acid encoding for and expressing the polypeptide or fragment thereof.
  • host cell
  • Host cells can include any eukaryotic cell or prokaryotic cell, including, but not limited, to a Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 mammalian cell, avian cell, amphibian cell, plant cell, fish cell, insect cell, bacterial cell, yeast cell, whether in vitro or in vivo.
  • the host cell can be a mammalian cell.
  • mamalian cell can refer to a cell of any mammal, including humans.
  • the phrase can refer to cells in vivo, such as, for example, in an organism or in an organ of an organism.
  • the phrase also can refer to cells in vitro, such as, for example, cells maintained in cell culture.
  • the recombinant ACE2 polypeptides described herein can be prepared using biological, chemical, and/or recombinant DNA techniques that are known in the art. Exemplary methods are described herein and in U.S. Pat. No.6,872,700; WO 2007/139941; WO 2007/140284; WO 2008/082274; WO 2009/011544; and US Publication No.
  • the recombinant ACE2 polypeptide can comprise a fragment polypeptide (i.e., “fragment”, “variant”, or “derivative”), which can refer to a short amino acid sequence of a larger polypeptide. Protein fragments can be “free-standing,” or comprised within a larger polypeptide of which the fragment forms a part of.
  • polypeptide fragments of the invention include, for example, fragments comprising about 5 amino acids, about 10 amino acids, about 15 amino acids, about 20 amino acids, about 30 amino acids, about 40 amino acids, about 50 amino acids, about 60 amino acids, about 70 amino acids, about 80 amino acids, about 90 amino acids, about 100, about 200, and about 500 amino acids or more in length.
  • the fragments thereof retain at least some biological activity of its parent polypeptide.
  • Polypeptides as described herein can include fragment, variant, or Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 derivative molecules without limitation, so long as the polypeptide still serves its function.
  • such biological activities can comprise resistance to ubiquitination, resistance to angiotensin II-induced degradation, enhanced enzymatic activity toward angiotensin formation, or increased cellular expression levels.
  • Polypeptide fragments for example, can include proteolytic fragments, deletion fragments and fragments which more easily reach the site of action when delivered to an animal.
  • recombinant fragment polypeptides can comprise a fragment of an amino acid sequence according to MGVIVVGIVILIFTGIRDRRKKNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKRKNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKRNKARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKKNRARSGENPYASIDISKGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRKKKNKARSGENPYASIDISRGENNPGFQNTDDVQTSF; MGVIVVGIVILIFTGIRDRRRRNRARSGENPYASIDISRGENNPGFQNTDDVQTSF, or a sequence that is at least 60%, at least 65%, at least 70%, at least 75%, at least 80%, at least
  • the fragment can be about 5 amino acids of an amino acid sequence described herein; from about 5 amino acids to about 10 amino acids of an amino acid sequence described herein; from about 10 amino acids to about 20 amino acids of an amino acid sequence described herein; from about 20 amino acids to about 30 amino acids of an amino acid sequence described herein; from about 30 amino acids to about 40 amino acids of an amino acid sequence described herein; from about 40 amino acids to about 50 amino acids of an amino acid sequence described herein; from about 50 amino acids to about 60 amino acids of an amino acid sequence described herein; from about 60 amino acids to about 70 amino acids of an amino acid sequence described herein; from about 70 amino acids to about 80 amino acids of an amino acid sequence described herein; Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 from about 80 amino acids to about 90 amino acids of an amino acid sequence described herein; from about 90 amino acids to about 100 amino acids of an amino acid sequence described herein; from about 100 amino acids to about 110 amino acids of an amino acid sequence described herein; from about
  • variants of the ACE2 polypeptide or fragment which substantially retains the property of being resistant to protein degradation.
  • a variant sequence can be obtained by addition, deletion, substitution, modification, replacement and/or variation of at least one residue present in the amino acid sequences described herein.
  • amino acid substitution or “substitution” can refer to replacing at least one amino acid residue present in a previously determined amino acid sequence with another different “substitution” amino acid residue.
  • one or more substitutions of lysine residues into arginine residues prevent ubiquitin-associated protein degradation.
  • substituting lysine with other amino acids will render the same effect.
  • histidine is an amino acid that closely resembles the polarity of arginine.
  • His ⁇ Arg substitutions just like Lys ⁇ Arg substitutions, will preserve interactions of ACE2 which are dependent on polarity.
  • deletion can refer to a change in a reference amino acid sequence that results in the absence of one or more amino acid residues.
  • a deletion removes at least 1, 2, 3, Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 4, 5, 10, 20, 50, 100, or 200 amino acids residues or a range of amino acid residues bounded by any of these values (e.g., a deletion of 5-10 amino acids).
  • a deletion may include an internal deletion or a terminal deletion (e.g., an N-terminal truncation or a C-terminal truncation of a reference polypeptide).
  • a “variant” of a reference polypeptide sequence may include a deletion relative to the reference polypeptide sequence.
  • insertion and “addition” refer to changes in an amino acid sequence resulting in the addition of one or more amino acid residues.
  • An insertion or addition may refer to 1, 2, 3, 4, 5, 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 150, or 200 amino acid residues or a range of amino acid residues bounded by any of these values (e.g., an insertion or addition of 5-10 amino acids).
  • nucleic acids or polypeptide sequences can refer to two or more sequences or subsequences that are the same or have a specified percentage of amino acid residues or nucleotides that are the same (i.e., about 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or higher identity over a specified region, when compared and aligned for maximum correspondence over a specified region). Percent identity can be measured by the eye or, more usually, with the aid of readily available sequence comparison programs.
  • sequences can be calculated precent identity between two or more sequences. For example, using a BLAST or BLAST 2.0 sequence comparison algorithms with default parameters set, or by manual alignment and visual inspection. Such sequences are then said to be “substantially identical.”
  • the definition can also include sequences that have deletions and/or additions, as well as those that have substitutions. Algorithms can account for gaps and the like.
  • Percent identity may be measured over the length of an entire defined polypeptide sequence, for example, as defined by a particular SEQ ID number, or may be measured over Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 a shorter length, for example, over the length of a fragment taken from a larger, defined polypeptide sequence, for instance, a fragment of at least 15, at least 20, at least 30, at least 40, at least 50, at least 100, at least 150, at least 200, at least 250, at least 300, at least 350, at least 400, at least 450, at least 500, at least 550, at least 600, at least 650, or at least 700 contiguous amino acid residues; or a fragment of no more than 15, 20, 30, 40, 50, 100, 150, 200, 250, 300, 350, 400, 450, 500, 550, 600, 650, or 700 amino acid residues; or over a range bounded by any of these values (e.g., a range of 500-600 amino acid residue
  • sequence comparison for example, one sequence acts as a reference sequence, to which test sequences are compared.
  • test and reference sequences are entered into a computer, subsequence coordinates are selected, if necessary, and sequence algorithm program parameters are selected. Default program parameters can be used, or alternative parameters can be selected.
  • sequence comparison algorithm then calculates the percent sequence identities for the test sequences relative to the reference sequence, based on the program parameters.
  • Protein Modifications [0088]
  • the polypeptide can comprise one or more modifications.
  • modification or “protein modification” can refer to one or more post-translational modifications or amino acid mutations (e.g., substitutions, deletions, and/or insertions as described herein), as is well understood in the art.
  • amino acid mutation can refer to one or more mutations of amino acid positions on a fragment of polypeptide and variants thereof, wherein the variant can be Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 obtained by substituting, inserting or deleting amino acids at one or some sites on the polypeptide.
  • the polypeptide fragment of ACE2 may be modified to increase half-life in plasma and/or to enhance delivery to a target (e.g., the kidney, the lungs, the heart, etc.). Strategies to improve plasma half-life of peptide and protein drugs are known in the art. (See Werle et al., “Strategies to improve plasma half life time of peptide and protein drugs,” Amino Acids 2006 June; 30(4):351-67). [0091] In embodiments, the recombinant ACE2 polypeptide can comprise one or more post-translational modifications.
  • post-translational modification can refer to a modification that increases the functional diversity of the proteome by the covalent addition of functional groups or proteins, proteolytic cleavage of regulatory subunits, or degradation of entire proteins.
  • Non-limiting examples of post-translational modifications include phosphorylation, glycosylation, ubiquitination, nitrosylation, methylation, acetylation, acylation, SUMOylation, deamination, lipidation and proteolysis, and influence almost all aspects of normal cell biology and pathogenesis.
  • Nucleic Acids [0093] Aspects of the invention are also drawn to nucleic acids encoding a recombinant ACE2 polypeptide or fragment thereof.
  • the nucleic acid comprises a nucleotide sequence encoding the recombinant polypeptide or a fragment thereof described herein, or a sequence that is at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, or greater than 95% identical thereto.
  • the nucleic acid comprises a “nucleic acid fragment”, which can refer to a portion of a larger nucleic acid molecule.
  • Polynucleotides of the invention may comprise DNA or RNA, preferably DNA. They may be single-stranded or double-stranded.
  • nucleotide sequences of the invention disclosed herein may comprise or lack stop codons at their 3' end, for example depending on their position in a bicistronic vector.
  • polynucleotides may be modified by any method available in the art. Such modifications may be carried out in order to enhance the in vivo activity or lifespan of the polynucleotides of the invention.
  • Polynucleotides such as DNA polynucleotides may be produced recombinantly, synthetically or by any means available to those of skill in the art. They may also be cloned by standard techniques. Longer polynucleotides will generally be produced using recombinant means, for example using polymerase chain reaction (PCR) cloning techniques.
  • PCR polymerase chain reaction
  • a vector is a tool that allows or facilitates the transfer of an entity from one environment to another.
  • the invention provides a vector comprising a Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 polynucleotide of the invention.
  • the vector is a viral vector.
  • the vector is an adeno-associated viral (AAV) vector, retroviral vector, lentiviral vector or adenoviral vector, preferably an AAV vector.
  • AAV adeno-associated viral
  • the polynucleotide or vector of the invention may also include elements allowing for the expression of the nucleotide sequence encoding the protein of the invention in vitro or in vivo. These may be referred to as expression control sequences.
  • the polynucleotide or vector typically comprises expression control sequences (e.g. comprising a promoter sequence) operably linked to the nucleotide sequence encoding the protein of the invention.
  • expression control sequences e.g. comprising a promoter sequence
  • Any suitable promoter may be used, the selection of which may be readily made by the skilled person.
  • the promoter sequence may be constitutively active (i.e. operational in any host cell background), or alternatively may be active only in a specific host cell environment, thus allowing for targeted expression of the transgene in a particular cell type (e.g. a tissue-specific promoter).
  • the promoter may show inducible expression in response to presence of another factor, for example a factor present in a host cell.
  • the polynucleotide or vector of the invention may also comprise one or more additional regulatory sequences which may act pre- or post-transcriptionally.
  • the regulatory sequence may be part of the native transgene locus or may be a heterologous regulatory sequence.
  • the polynucleotide or vector of the invention may comprise portions of the 5'UTR or 3'-UTR from the native transgene transcript.
  • Regulatory sequences are any sequences which facilitate expression of the transgene, i.e., act to increase expression of a transcript, improve nuclear export of mRNA or enhance its stability.
  • Such regulatory sequences include for example enhancer elements, post- transcriptional regulatory elements and polyadenylation sites. Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 [00103] Suitable enhancers include the WPRE regulatory element. Suitable poly-A signals include the Bovine Growth Hormone poly-A signal. [00104] Additional regulatory sequences may be readily selected by the skilled person. [00105] Aspects of the invention are further drawn to a cell comprising the nucleic acids described herein. As described herein, the cell can be referred to as a host cell.
  • host cell can be used interchangeably and can refer to the cells into which exogenous nucleic acid can be introduced, including the progeny of such cells.
  • Host cells include “transformants” and “transformed cells,” which include the primary transformed cell and the progeny derived therefrom without regard to the number of passages.
  • the progeny does not need to be completely identical in nucleic acid content to a parent cell, but it can contain mutations. Mutant progeny that have the same biological function or activity as screened or selected in the originally transformed cell are included in the invention.
  • Host cells can include any eukaryotic cell or prokaryotic cell, including, but not limited, to a mammalian cell, an insect cell, bacterial cell, yeast cell, whether in vitro or in vivo.
  • the host cell can be a mammalian cell.
  • the phrase “mammalian cell” can refer to a cell of any mammal, including humans.
  • the phrase can refer to cells in vivo, such as, for example, in an organism or in an organ of an organism.
  • the phrase also can refer to cells in vitro, such as, for example, cells maintained in cell culture.
  • the engineered polypeptides described herein can be designed at the amino acid level.
  • nucleotide sequence can then be back translated using a variety of software products known in the art such that the nucleotide sequence is optimized for expression, such as in a given host (for example, based protein expression, codon optimization, restriction site content).
  • the nucleotide sequence can be optimized for E. coli based protein expression and for restriction site content.
  • overlapping oligonucleotides can be provided for multistep PCR, as known in the art. These oligonucleotides can be used in multiple PCR reactions under conditions well known in the art to build the cDNA encoding the protein of interest.
  • ACE2 polypeptides and fragments thereof described herein can be prepared using recombinant DNA techniques using methods known in the art, such as Sambrook et al., 1989, MOLECULAR CLONING: A LABORATORY MANUAL, 2d Ed., Cold Spring Harbor.
  • Non-peptide compounds can be prepared by art-known methods. For example, phosphate-containing amino acids and peptides containing such amino acids, can be prepared using methods known in the art, such as described in Bartlett et al, 1986, Biorg. Chem.14:356-377.
  • the engineered polypeptides can alternatively be produced by recombinant techniques well known in the art. See, e.g., Sambrook et al., 1989 (Id.). These engineered polypeptides produced by recombinant technologies can be expressed from a polynucleotide.
  • polynucleotides including DNA and RNA, that encode such engineered polypeptides can be obtained from the wild-type cDNA, taking into consideration the degeneracy of codon usage, and can be further engineered to incorporate the indicated substitutions.
  • These polynucleotide sequences can incorporate codons facilitating transcription and translation of mRNA in microbial hosts.
  • Non-peptide compounds useful in the invention can be prepared by art-known methods. For example, phosphate-containing amino acids and peptides containing such amino acids can be prepared Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 using methods known in the art. See, e.g., Bartlett and Landen, 1986, Bioorg. Chem.14: 356- 77.
  • a variety of expression vector/host systems can be utilized to contain and express an engineered polypeptide coding sequence. These include but are not limited to microorganisms such as bacteria transformed with recombinant bacteriophage, plasmid or cosmid DNA expression vectors; yeast transformed with yeast expression vectors; insect cell systems infected with virus expression vectors (e.g., baculovirus); plant cell systems transfected with virus expression vectors (e.g., cauliflower mosaic virus, CaMV; tobacco mosaic virus, TMV) or transformed with bacterial expression vectors (e.g., Ti or pBR322 plasmid); or animal cell systems.
  • microorganisms such as bacteria transformed with recombinant bacteriophage, plasmid or cosmid DNA expression vectors; yeast transformed with yeast expression vectors; insect cell systems infected with virus expression vectors (e.g., baculovirus); plant cell systems transfected with virus expression vectors (e.g., cauliflower mosaic virus, CaMV; tobacco mosaic virus,
  • Mammalian cells that are useful in recombinant protein productions include but are not limited to VERO cells, HeLa cells, Chinese hamster ovary (CHO) cell lines, COS cells (such as COS-7), WI 38, BHK, HepG2, 3T3, RIN, MDCK, A549, PC12, K562 and 293 cells. Exemplary protocols for the recombinant expression of the protein are described herein and/or are known in the art.
  • polynucleotide sequences are useful in generating new and useful viral and plasmid DNA vectors, new and useful transformed and transfected prokaryotic and eukaryotic host cells (including bacterial, yeast, and mammalian cells grown in culture), and new and useful methods for cultured growth of such host cells that can express the engineered polypeptides.
  • the polynucleotide sequences encoding engineered polypeptides herein can be useful for gene therapy in instances where underproduction of engineered polypeptides can be alleviated, or the need for increased levels of such can be met.
  • This invention also provides for processes for recombinant DNA production of the engineered polypeptides.
  • Host cells can be prokaryotic or eukaryotic and include bacteria, mammalian cells (such as Chinese Hamster Ovary (CHO) cells, monkey cells, baby hamster kidney cells, cancer cells or other cells), yeast cells, and insect cells.
  • mammalian cells such as Chinese Hamster Ovary (CHO) cells, monkey cells, baby hamster kidney cells, cancer cells or other cells
  • Mammalian host systems for the expression of the recombinant protein also are well known to those of skill in the art. Host cell strains can be chosen for their ability to process the expressed protein or produce certain post-translation modifications that will be useful in providing protein activity. Such modifications of the polypeptide include, but are not limited to, acetylation, carboxylation, glycosylation, phosphorylation, lipidation and acylation. Post-translational processing, which cleaves a “prepro” form of the protein, can also be important for correct insertion, folding and/or function.
  • a yeast system can be employed to generate the engineered polypeptides of the invention.
  • the coding region of the engineered polypeptides DNA is amplified by PCR.
  • a DNA encoding the yeast pre-pro-alpha leader sequence is amplified from yeast genomic DNA in a PCR reaction using one primer containing nucleotides 1-20 of the alpha mating factor gene and another primer complementary to nucleotides 255-235 of this gene (Kurjan and Herskowitz, 1982, Cell, 30:933-43).
  • the pre-pro-alpha leader coding sequence and engineered polypeptide coding sequence fragments are ligated into a plasmid containing the yeast alcohol dehydrogenase (ADH2) promoter, such that the promoter directs expression of a fusion protein consisting of the pre-pro-alpha factor fused to the mature engineered polypeptide.
  • ADH2 yeast alcohol dehydrogenase
  • the vector further includes an ADH2 transcription terminator downstream of the cloning site, the yeast “2-micron” replication origin, the yeast leu-2d gene, the yeast REP1 and REP2 genes, the E. coli beta-lactamase gene, and an E. coli origin of replication.
  • the beta-lactamase and leu-2d genes provide for selection in bacteria and yeast, respectively.
  • the leu-2d gene also facilitates increased copy number of the plasmid in yeast to induce higher levels of expression.
  • the REP1 and REP2 genes encode proteins involved in regulation of the plasmid copy number.
  • the DNA construct described in the preceding paragraph is transformed into yeast cells using a known method, e.g., lithium acetate treatment (Steams et al., 1990, Meth. Enz. 185: 280-297).
  • the ADH2 promoter is induced upon exhaustion of glucose in the growth media (Price et al., 1987, Gene 55:287).
  • the pre-pro-alpha sequence effects secretion of the fusion protein from the cells.
  • the yeast KEX2 protein cleaves the pre-pro sequence from the mature engineered polypeptides (Bitter et al., 1984, Proc. Natl. Acad. Sci. USA 81:5330-5334).
  • Engineered polypeptides of the invention can also be recombinantly expressed in yeast, e.g., Pichia, using a commercially available expression system, e.g., the Pichia Expression System (Invitrogen, San Diego, Calif.), following the manufacturer's instructions. This system also relies on the pre-pro-alpha sequence to direct secretion, but transcription of the insert is driven by the alcohol oxidase (AOX1) promoter upon induction by methanol.
  • AOX1 alcohol oxidase
  • the secreted engineered polypeptide is purified from the yeast growth medium by, e.g., the methods used to purify said engineered polypeptide from bacterial and mammalian cell supernatants.
  • the DNA encoding an engineered polypeptide can be cloned into a baculovirus expression vector, e.g. pVL1393 (PharMingen, San Diego, Calif.).
  • a baculovirus expression vector e.g. pVL1393 (PharMingen, San Diego, Calif.).
  • This engineered-polypeptide-encoding vector is then used according to the manufacturer's Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 directions (PharMingen) or known techniques to infect Spodoptera frugiperda cells, grown for example in sF9 protein-free media, and to produce recombinant protein.
  • the protein is purified and concentrated from the media using methods known in the art, e.g.
  • heparin- Sepharose column Pharmacia, Piscataway, N.J.
  • sequential molecular sizing columns Amicon, Beverly, Mass.
  • resuspended in appropriate solution e.g. PBS.
  • SDS-PAGE analysis can be used to characterize the protein, for example by showing a single band that confirms the size of the engineered polypeptide, as can full amino acid amino acid sequence analysis, e.g. Edman sequencing on a Proton 2090 Peptide Sequencer, or confirmation of its N-terminal sequence.
  • the DNA sequence encoding the predicted mature engineered polypeptide can be cloned into a plasmid containing a promoter and, optionally, a leader sequence (see, e.g., Better et al., 1988, Science 240:1041-1043). The sequence of this construct can be confirmed by automated sequencing.
  • the plasmid can then be transformed into E. coli, strain MC1061, using standard procedures employing CaCl2 incubation and heat shock treatment of the bacteria (Sambrook et al., Id.). The transformed bacteria are grown in LB medium supplemented with carbenicillin, and production of the expressed protein is induced by growth in a suitable medium.
  • the leader sequence can affect secretion of the mature engineered polypeptide and be cleaved during secretion.
  • the secreted recombinant engineered polypeptide can be purified from the bacterial culture media by the method described herein.
  • the engineered polypeptides can be expressed in an insect system. Insect systems for protein expression are well known to those of skill in the art. In one such system, Autographa californica nuclear polyhedrosis virus (AcNPV) is used as a vector to express foreign genes in Spodoptera frugiperda cells or in Trichoplusia larvae.
  • AcNPV Autographa californica nuclear polyhedrosis virus
  • the engineered polypeptide coding sequence is cloned into a nonessential region of the virus, Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 such as the polyhedrin gene, and placed under control of the polyhedrin promoter. Successful insertion of an engineered polypeptide will render the polyhedrin gene inactive and produce recombinant virus lacking coat protein coat. The recombinant viruses are then used to infect S. frugiperda cells or Trichoplusia larvae in which engineered polypeptide of the invention is expressed (Smith et al., 1983, J. Virol.46:584; Engelhard et al., 1994, Proc. Natl. Acad. Sci.
  • the DNA sequence encoding the engineered polypeptides can be amplified by PCR and cloned into an appropriate vector, for example, pGEX-3X (Pharmacia, Piscataway, N.J.).
  • the pGEX vector is designed to produce a fusion protein comprising glutathione-S-transferase (GST), encoded by the vector, and a protein encoded by a DNA fragment inserted into the vector's cloning site.
  • the primers for the PCR can be generated to include, for example, an appropriate cleavage site.
  • the recombinant fusion protein can then be cleaved from the GST portion of the fusion protein.
  • the pGEX- 3X/engineered polypeptide construct is transformed into E. coli XL-1 Blue cells (Stratagene, La Jolla, Calif.), and individual transformants are isolated and grown at 37° C. in LB medium (supplemented with carbenicillin) to an optical density at wavelength 600 nm of 0.4, followed by further incubation for 4 hours in the presence of 0.5 mM Isopropyl beta-D- thiogalactopyranoside (Sigma Chemical Co., St. Louis, Mo.). Plasmid DNA from individual transformants is purified and partially sequenced using an automated sequencer to confirm the presence of the engineered polypeptide-encoding gene insert in the proper orientation.
  • viral delivery systems can be used to transduce cells.
  • lentiviral infection i.e., lentiviral transduction
  • lentiviral transduction can be used to introduce an exogenous polynucleotide into the genome of a cell.
  • the use of lentiviral vectors permits stable expression of the polynucleotide of interest.
  • lentiviral transduction can be Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 performed by incubating cells to be transduced with a lentiviral vector carrying at least one polynucleotide encoding a polypeptide of interest.
  • the transformed cells are used for long-term, high-yield protein production and as such stable expression is desirable.
  • the cells can be allowed to grow for 1-2 days in an enriched media before they are switched to selective media.
  • the selectable marker can be designed to confer resistance to selection, and its presence allows growth and recovery of cells that successfully express the introduced sequences. Resistant clumps of stably transformed cells can be proliferated using tissue culture techniques appropriate to the cell.
  • a number of selection systems can be used to recover the cells that have been transformed for recombinant protein production.
  • Such selection systems include, but are not limited to, HSV thymidine kinase, hypoxanthine-guanine phosphoribosyltransferase and adenine phosphoribosyltransferase genes, in tk-, hgprt- or aprt-cells, respectively.
  • anti- metabolite resistance can be used as the basis of selection for dhfr, that confers resistance to methotrexate; gpt, that confers resistance to mycophenolic acid; neo, that confers resistance to the aminoglycoside, G418; also, that confers resistance to chlorsulfuron; hygro, that confers resistance to hygromycin; or PAC, that confers resistance to puromycin.
  • Additional selectable genes that can be useful include trpB, which allows cells to utilize indole in place of tryptophan, or hisD, which allows cells to utilize histinol in place of histidine.
  • the engineered polypeptides of the invention can be produced using a combination of both automated peptide synthesis and recombinant techniques. Engineered polypeptides can be made synthetically or recombinantly and then, in embodiments, ligated together using Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 methods known in the art, such as “native chemical ligation” and known variations thereof in which an amide bond is formed joining the parent compounds. See for example U.S. Pat. No. 6,326,468.
  • an engineered polypeptide of the invention can contain a combination of modifications including deletion, substitution, insertion and derivatization by PEGylation (or other moiety, e.g. polymer, fatty acyl chain, C-terminal amidation).
  • PEGylation or other moiety, e.g. polymer, fatty acyl chain, C-terminal amidation.
  • Such an engineered polypeptide can be produced in stages. In the first stage, an intermediate engineered polypeptide containing the modifications of deletion, substitution, insertion, and any combination thereof, can be produced by recombinant techniques as described.
  • the intermediate engineered polypeptide is PEGylated (or subjected to other chemical derivatization, e.g., acylation, C-terminal amidation) through chemical modification with an appropriate PEGylating reagent (e.g., from NeKtar Transforming Therapeutics, San Carlos, Calif.) to yield the engineered polypeptide derivative.
  • an appropriate PEGylating reagent e.g., from NeKtar Transforming Therapeutics, San Carlos, Calif.
  • the procedure described herein can apply to an engineered polypeptide containing a combination of modifications selected from deletion, substitution, insertion, derivation, and other means of modification well known in the art.
  • C-terminal amidation can be achieved by use of a glycine amino acid-C-terminally extended precursor, synthesized for example in yeast (e.g. Pichia) as alpha-factor fusion protein that will be secreted into culture medium.
  • yeast e.g. Pichia
  • the C-terminal glycine of the engineered polypeptide precursor can be converted to amide by enzymatic amidation, e.g. peptidylglycine alpha-amidating monooxygenase (PAM).
  • PAM monooxygenase
  • No.6,319,685 which teaches methods for enzymatic amidation, including an alpha-amidating enzyme from rat being sufficiently pure in alpha-amidating enzyme to exhibit a specific activity of at least about 25 mU per mg of protein, and being sufficiently free of proteolytic impurities to be suitable for Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 use with substrates purified from natural sources or produced by recombinant DNA techniques.
  • a variety of peptide purification techniques known in the art may be utilized. Similarly, methods are available for assaying the level of protein expression by a host cell. Numerous methods are also known for isolation of expressed polypeptides from conditioned media.
  • a host cell e.g., a mammalian host cell
  • a host cell can be engineered to express and secrete a recombinant polypeptide described herein.
  • the recombinant polypeptide can then be purified from the conditioned media using conventional techniques, such as immunoprecipitation, affinity chromatography, polypeptide A-sepharose, gel electrophoresis, and the like.
  • Adeno-associated viral (AAV) vectors [00130]
  • the invention provides an AAV vector comprising a polynucleotide of the invention.
  • the AAV vector is in the form of an AAV vector particle.
  • the AAV vector particle can comprise an AAV2 genome, an AAV8 genome, or an AAV9 genome.
  • the AAV vector particle comprises AAV9 capsid proteins or AAV8 capsid proteins.
  • Methods of preparing and modifying viral vectors and viral vector particles, such as those derived from AAV, are well known in the art.
  • the AAV vector may comprise an AAV genome or a fragment or derivative thereof.
  • AAV is known to be capable of packaging genomes up to 5.2 kb in size (Dong, J.- Y. et al. (1996) Human Gene Therapy 7: 2101-2112).
  • An AAV genome is a polynucleotide sequence, which may encode functions needed for production of an AAV particle. These functions include those operating in the replication and packaging cycle of AAV in a host cell, including encapsidation of the AAV genome into an AAV particle. Naturally occurring AAVs are replication-deficient and rely on the provision of helper functions in trans for completion of a replication and packaging cycle. Accordingly, the AAV genome of the AAV vector of the invention is typically replication- deficient.
  • the AAV genome may be in single-stranded form, either positive or negative- sense, or alternatively in double-stranded form.
  • the use of a double-stranded form allows bypass of the DNA replication step in the target cell and so can accelerate transgene expression.
  • the AAV genome may be from any naturally derived serotype, isolate or clade of AAV.
  • the AAV genome may be the full genome of a naturally occurring AAV.
  • AAVs occurring in nature may be classified according to various biological systems.
  • AAVs are referred to in terms of their serotype.
  • a serotype corresponds to a variant subspecies of AAV which, owing to its profile of expression of capsid surface antigens, has a distinctive reactivity which can be used to distinguish it from other variant subspecies.
  • AAV serotypes include AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10 and AAV11, and also recombinant serotypes, such as Rec2 and Rec3, recently identified from primate brain. Any of these AAV serotypes may be used in the invention.
  • the AAV vector particle is an AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, Rec2 or Rec3 AAV vector particle.
  • the AAV is an AAV1, AAV2, AAV5, AAV7, AAV8 or AAV9 serotype.
  • the capsid protein may be a mutant capsid protein such as disclosed in WO 2008/124724, which is herein incorporated by reference. [00144] Reviews of AAV serotypes may be found in Choi et al. (2005) Curr.
  • sequences of AAV genomes or of elements of AAV genomes including ITR sequences, rep or cap genes for use in the invention may be derived from the following accession numbers for AAV whole genome sequences: Adeno-associated virus 1 NC_002077, AF063497; Adeno-associated virus 2 NC_001401; Adeno-associated virus 3 NC_001729; Adeno-associated virus 3B NC_001863; Adeno-associated virus 4 NC_001829; Adeno-associated virus 5 Y18065, AF085716; Adeno-associated virus 6 NC_001862; Avian AAV ATCC VR-865 AY186198, AY629583, NC_004828; Avian AAV strain DA-1 NC_006263, AY629583; Bovine AAV NC_005889, AY388617.
  • AAV may also be referred to in terms of clades or clones. This refers to the phylogenetic relationship of naturally derived AAVs, and typically to a phylogenetic group of AAVs which can be traced back to a common ancestor, and includes all descendants thereof. Additionally, AAVs may be referred to in terms of a specific isolate, i.e. a genetic isolate of a specific AAV found in nature. The term genetic isolate describes a population of AAVs which has undergone limited genetic mixing with other naturally occurring AAVs, thereby defining a recognizably distinct population at a genetic level.
  • AAV serotype determines the tissue specificity of infection ( or tropism) of an AA V.
  • the AAV genome of a naturally derived serotype, isolate or clade of AAV comprises at least one inverted terminal repeat sequence (ITR).
  • ITR sequence acts in cis to provide a functional origin of replication and allows for integration and excision of the vector from the genome of a cell.
  • one or more ITR sequences flank the nucleotide sequences encoding the protein of the invention.
  • the AAV genome typically also comprises packaging genes, such as rep and/or cap genes which encode packaging functions for an AAV particle.
  • the rep gene encodes one or more of the proteins Rep78, Rep68, Rep52 and Rep40 or variants thereof.
  • the cap gene encodes one or more capsid proteins such as VP1, VP2 and VP3 or variants thereof. These proteins make up the capsid of an AAV particle. Capsid variants are discussed below. [00149]
  • a promoter will be operably linked to each of the packaging genes. Specific examples of such promoters include the p5, p19 and p40 promoters (Laughlin et al. (1979) Proc. Natl. Acad. Sci. USA 76: 5567-5571).
  • the p5 and p19 promoters are generally used to express the rep gene, while the p40 promoter is generally used to express the cap gene.
  • Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 [00150]
  • the AAV genome used in the AAV vector of the invention may therefore be the full genome of a naturally occurring AA V.
  • a vector comprising a full AAV genome may be used to prepare an AAV vector or vector particle in vitro.
  • the AAV genome will be derivatized for the purpose of administration to patients.
  • Such derivatization is standard in the art and the invention encompasses the use of any known derivative of an AAV genome, and derivatives which could be generated by applying techniques known in the art. Derivatization of the AAV genome and of the AAV capsid are reviewed in: Coura and Nardi (2007) Virology Journal 4: 99, and in Choi et al. and Wu et al., referenced above. [00151] Derivatives of an AAV genome include any truncated or modified forms of an AAV genome which allow for expression of a transgene from an AAV vector of the invention in vivo. Typically, it is possible to truncate the AAV genome significantly to include minimal viral sequence yet retain the above function.
  • a derivative will include at least one inverted terminal repeat sequence (ITR), preferably more than one ITR, such as two ITRs or more.
  • ITRs may be derived from AAV genomes having different serotypes, or may be a chimeric or mutant ITR.
  • a preferred mutant ITR is one having a deletion of a trs (terminal resolution site). This deletion allows for continued replication of the genome to generate a single stranded genome which contains both coding and complementary sequences, i.e.
  • the one or more ITRs will preferably flank the nucleotide sequence encoding the protein of the invention at either end.
  • the inclusion of one or more ITRs is preferred to aid concatamer formation of the vector of the invention in the nucleus of a host cell, for example following the conversion of single-stranded vector DNA into double-stranded DNA by the action of host cell DNA polymerases.
  • ITR elements will be the only sequences retained from the native AAV genome in the derivative.
  • a derivative will preferably not include the rep and/or cap genes of the native genome and any other sequences of the native genome. This is preferred for the reasons described above, and also to reduce the possibility of integration of the vector into the host cell genome. Additionally, reducing the size of the AAV genome allows for increased flexibility in incorporating other sequence elements (such as regulatory elements) within the vector in addition to the transgene.
  • derivatives may additionally include one or more rep and/or cap genes or other viral sequences of an AAV genome.
  • Naturally occurring AAV integrates with a high frequency at a specific site on human chromosome 19, and shows a negligible frequency of random integration, such that retention of an integrative capacity in the vector may be tolerated in a therapeutic setting.
  • a derivative comprises capsid proteins i.e.
  • the derivative may be a chimeric, shuffled or capsid-modified derivative of one or more naturally occurring AAVs.
  • the invention encompasses the provision of capsid protein Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 sequences from different serotypes, clades, clones, or isolates of AAV within the same vector (i.e. a pseudotyped vector).
  • Chimeric, shuffled or capsid-modified derivatives will be typically selected to provide one or more desired functionalities for the AAV vector.
  • these derivatives may display increased efficiency of gene delivery, decreased immunogenicity (humeral or cellular), an altered tropism range and/or improved targeting of a particular cell type compared to an AAV vector comprising a naturally occurring AAV genome, such as that of AAV2.
  • Increased efficiency of gene delivery may be effected by improved receptor or co- receptor binding at the cell surface, improved internalization, improved trafficking within the cell and into the nucleus, improved uncoating of the viral particle and improved conversion of a single stranded genome to double-stranded form.
  • Increased efficiency may also relate to an altered tropism range or targeting of a specific cell population, such that the vector dose is not diluted by administration to tissues where it is not needed.
  • Chimeric capsid proteins include those generated by recombination between two or more capsid coding sequences of naturally occurring AAV serotypes. This may be performed for example by a marker rescue approach in which non-infectious capsid sequences of one serotype are co-transfected with capsid sequences of a different serotype, and directed selection is used to select for capsid sequences having desired properties.
  • the capsid sequences of the different serotypes can be altered by homologous recombination within the cell to produce novel chimeric capsid proteins.
  • Chimeric capsid proteins also include those generated by engineering of capsid protein sequences to transfer specific capsid protein domains, surface loops or specific amino acid residues between two or more capsid proteins, for example between two or more capsid proteins of different serotypes. Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 [00160]
  • Shuffled or chimeric capsid proteins may also be generated by DNA shuffling or by error-prone PCR.
  • Hybrid AAV capsid genes can be created by randomly fragmenting the sequences of related AAV genes e.g.
  • a library of hybrid AAV genes created in this way by shuffling the capsid genes of several serotypes can be screened to identify viral clones having a desired functionality.
  • error prone PCR may be used to randomly mutate AAV capsid genes to create a diverse library of variants which may then be selected for a desired property.
  • the sequences of the capsid genes may also be genetically modified to introduce specific deletions, substitutions or insertions with respect to the native wild-type sequence.
  • capsid genes may be modified by the insertion of a sequence of an unrelated protein or peptide within an open reading frame of a capsid coding sequence, or at the N and/ or C-terminus of a capsid coding sequence.
  • the unrelated protein or peptide may advantageously be one which acts as a ligand for a particular cell type, thereby conferring improved binding to a target cell or improving the specificity of targeting of the vector to a particular cell population.
  • the unrelated protein may also be one which assists purification of the viral particle as part of the production process, i.e. an epitope or affinity tag.
  • the site of insertion will typically be selected so as not to interfere with other functions of the viral particle e.g.
  • the invention additionally encompasses the provision of sequences of an AAV genome in a different order and configuration to that of a native AAV genome.
  • the invention also encompasses the replacement of one or more AAV sequences or genes with sequences Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 from another virus or with chimeric genes composed of sequences from more than one virus.
  • Such chimeric genes may be composed of sequences from two or more related viral proteins of different viral species.
  • the AAV vector of the invention may take the form of a nucleotide sequence comprising an AAV genome or derivative thereof and a sequence encoding the protein of the invention.
  • the AAV particles of the invention include transcapsidated forms wherein an AAV genome or derivative having an ITR of one serotype is packaged in the capsid of a different serotype.
  • the AAV particles of the invention also include mosaic forms wherein a mixture of unmodified capsid proteins from two or more different serotypes makes up the viral capsid.
  • the AAV particle also includes chemically modified forms bearing ligands adsorbed to the capsid surface. For example, such ligands may include antibodies for targeting a particular cell surface receptor.
  • the AAV vector may comprise multiple copies (e.g., 2, 3 etc.) of the nucleotide sequence referred to herein.
  • the polynucleotide further comprises one or more AAV ITRs.
  • the polynucleotide further comprises two AAV ITRs.
  • the polynucleotide comprises an AAV ITR at its 5' end and an AA V ITR at its 3' end.
  • the AAV ITRs are AAV2, AAV9 or AAV8 ITRs.
  • compositions may comprise, in addition to the medicament, a pharmaceutically acceptable carrier, diluent, excipient, buffer, stabilizer or other materials well known in the art.
  • a pharmaceutically acceptable carrier diluent, excipient, buffer, stabilizer or other materials well known in the art.
  • Such Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 materials should be non-toxic and should not interfere with the efficacy of the active ingredient.
  • the compositions may be in solid or liquid form, suitable for oral, parenteral, intravenous or intra-arterial administration.
  • the pharmaceutical composition is typically in liquid form.
  • Liquid pharmaceutical compositions generally include a liquid carrier such as water, petroleum, animal or vegetable oils, mineral oil or synthetic oil. Physiological saline solution, magnesium chloride, dextrose or other saccharide solution, or glycols such as ethylene glycol, propylene glycol or polyethylene glycol may be included. In some cases, a surfactant, such as pluronic acid (PF68) 0.001% may be used.
  • PF68 pluronic acid
  • the active ingredient may be in the form of an aqueous solution which is pyrogen-free, and has suitable pH, isotonicity and stability.
  • aqueous solution which is pyrogen-free, and has suitable pH, isotonicity and stability.
  • isotonic vehicles such as Sodium Chloride Injection, Ringer's Injection or Lactated Ringer's Injection.
  • Preservatives, stabilizers, buffers, antioxidants and/or other additives may be included as required.
  • the medicament may be included in a pharmaceutical composition which is formulated for slow release, such as in microcapsules formed from biocompatible polymers or in liposomal carrier systems according to methods known in the art.
  • the pharmaceutical composition can further comprise at least one additional active agent.
  • additional active agent can refer to an agent useful Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 alone, administered simultaneously, administered sequentially, or in combination with one or more additional agents, in the treatment, prophylaxis or palliative care of a subject afflicted with a disease or disorder.
  • the additional active agent can be employed in the compositions in an amount previously employed alone as a“standard of care”.
  • the additional active agent can be employed in the compositions in less than an amount previously employed alone as a“standard of care”. In embodiments, the additional active agent can be co-administered or employed in a composition of the disclosure in an amount effective to cause measurable reduction of a symptom or sign of a disease, disorder or condition.
  • Methods of Treatment include curative, palliative and prophylactic treatment; although in the context of the invention references to preventing are more commonly associated with prophylactic treatment. Treatment may also include arresting progression in the severity of a disease.
  • the treatment of mammals, particularly humans, is preferred.
  • Embodiments as described herein are drawn towards methods of treating a subject afflicted with a cardiovascular disease or pulmonary disease.
  • the method comprises administering to the subject the recombinant polypeptide described herein, the nucleic acid described herein, the cell described herein, or the pharmaceutical composition described herein.
  • cardiovascular disease can refer to a type of disease involving the heart or blood vessels.
  • Cardiovascular diseases include but are not limited to hypertensive heart disease, type 2 diabetes, heart failure, coronary artery disease (CAD), myocardial infarction (commonly known as a heart attack), stroke, rheumatic heart disease, cardiomyopathy, and cardiac arrhythmias (i.e., atrial fibrillation)., ventricular tachycardia, cerebrovascular disease, peripheral arterial disease, and arterial thrombosis.
  • the disease or condition comprises a pulmonary disease.
  • pulmonary disease and “respiratory disease” can refer to a type of disease that affects the lungs and other parts of the respiratory system.
  • Pulmonary diseases can be caused by infection, by smoking tobacco, or by breathing in secondhand tobacco smoke, radon, asbestos, or other forms of air pollution. Pulmonary diseases include but are Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 not limited to acute respiratory distress disease (ARDS), COVID-19, asthma, chronic obstructive pulmonary disease (COPD), pulmonary fibrosis, pneumonia, and lung cancer.
  • ARDS acute respiratory distress disease
  • COVID-19 chronic obstructive pulmonary disease
  • COPD chronic obstructive pulmonary disease
  • pulmonary fibrosis pneumonia
  • lung cancer pulmonary fibrosis
  • the term “treat” or “treatment” can refer to the medical management of a subject with the intent to cure, ameliorate, stabilize, or prevent a disease, pathological condition, or disorder.
  • This term includes active treatment, that is, treatment directed specifically toward the improvement of a disease, pathological condition, or disorder, and also includes causal treatment, that is, treatment directed toward removal of the cause of the associated disease, pathological condition, or disorder.
  • active treatment that is, treatment directed specifically toward the improvement of a disease, pathological condition, or disorder
  • causal treatment that is, treatment directed toward removal of the cause of the associated disease, pathological condition, or disorder.
  • palliative treatment that is, treatment designed for the relief of symptoms rather than the curing of the disease, pathological condition, or disorder
  • preventative treatment that is, treatment directed to minimizing or partially or completely inhibiting the development of the associated disease, pathological condition, or disorder
  • supportive treatment that is, treatment employed to supplement another specific therapy directed toward the improvement of the associated disease, pathological condition, or disorder.
  • the term “prevent,” “preventing,” or “prevention” does not require absolute forestalling of the condition or disease but can also include a reduction in the onset or severity of the disease or condition.
  • the terms “subject” or “individual” or “animal” or “patient” or “mammal,” can refer to any subject for whom diagnosis, prognosis, or therapy is needed, as described herein.
  • Mammalian subjects can include, but are not limited to, humans, domestic animals, farm animals, zoo animals, sport animals, pet animals such as dogs, cats, guinea pigs, rabbits, rats, mice, horses, cattle, cows; primates such as apes, monkeys, orangutans, and chimpanzees; canids such as dogs and wolves; felids such as cats, lions, and tigers; equids such as horses, donkeys, and zebras; food animals such as cows, pigs, and sheep; ungulates such as deer and Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 giraffes; rodents such as mice, rats, hamsters and guinea pigs; and so on.
  • pet animals such as dogs, cats, guinea pigs, rabbits, rats, mice, horses, cattle, cows; primates such as apes, monkeys,
  • the mammal is a human subject.
  • the methods comprise administering to the subject a pharmaceutical composition described herein, such as a pharmaceutical composition comprising a recombinant polypeptide or a fragment thereof described herein.
  • the pharmaceutical composition can be administered in a therapeutically effective amount.”
  • therapeutically effective can refer to that amount of the composition sufficient to treat a disease and/or ameliorate one or more causes or symptoms of a disease or disorder. Amelioration, for example, only requires a reduction or alteration, not necessarily elimination.
  • the terms “therapeutically effective amount” “therapeutic amount” and “pharmaceutically effective amount” are synonymous.
  • administration can refer to the act of physically delivering, e.g., via injection or an oral route, a substance as it exists outside the body into a patient, such as by intracranial, oral, subcutaneous, mucosal, intradermal, intravenous, intramuscular delivery and/or any other method of physical delivery described herein or known in the art.
  • administration of the substance can occur after the onset of the disease, disorder or condition or symptoms thereof.
  • Prophylactic treatment involves the administration of the substance at a time prior to the onset of the disease, disorder or condition or symptoms thereof.
  • one or more additional molecules can be administered (i.e., co- administered) to the subject.
  • co-administration can refer to simultaneous and sequential administration of two or more compounds or compositions.
  • An appropriate time course for sequential administration can be chosen by the physician, according to such factors Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 as the nature of a patient's illness, and the patient's condition.
  • additional molecules that can be administered to the subject together with a composition as described herein can comprise conventional therapeutics, such as conventional cardiovascular disease therapeutics or pulmonary disease therapeutics.
  • Conventional cardiovascular disease therapeutics include, but are not limited to, anticoagulants, antiplatelet agents and dual antiplatelet therapy, ACE inhibitors, angiotensin II receptor blockers, angiotensin receptor-neprilysin inhibitors, beta blockers, calcium channel blockers, cholesterol-lowering medications, digitalis preparations, diuretics, and vasodilators.
  • Conventional pulmonary disease therapeutics include, but are not limited to, oxygen therapy, pulmonary rehabilitation, and thoracentesis.
  • ACE2-5R an ACE2 mutant with enhanced activity
  • ACE2-5R an ACE2 mutant with enhanced activity
  • a new human Angiotensin Converting Enzyme type 2 (ACE2) protein (isoform 1, uniprot id: Q9BYF1) was generated by mutation of five lysine residues into arginine residues in the carboxy tail of the protein, specifically 769KKK771, 773K and 787K were substituted to 769RRR771, 773R and 787R.
  • ACE2-5R an ACE2 mutant with enhanced activity
  • aspects of the invention can be used for gene therapy to boost ACE2 activity and oppose the development of cardiovascular and pulmonary diseases such as hypertension, type 2 diabetes, heart failure, ARDS and COVID-19.
  • Embodiments as described herein are resistant to ubiquitination and therefore cannot be degraded via this mechanism, providing the protein with increased half-life and enhanced enzymatic activity toward formation of angiotensin(1-7) which is known to have beneficial effects on cardiovascular and pulmonary function.
  • Nedd4-2 up-regulation is associated with ACE2 ubiquitination in hypertension
  • Abstract [00210]
  • Angiotensin-converting enzyme 2 (ACE2) is a critical component of the compensatory renin–angiotensin system that is down-regulated during the development of hypertension, possibly via ubiquitination.
  • ACE2 ubiquitination Invasive renin-converting enzyme 2
  • This study aimed at identifying ACE2 ubiquitination partners, establishing causal relationships and clinical relevance, and testing a gene therapy strategy to mitigate ACE2 ubiquitination in neurogenic hypertension.
  • ACE2-5R expression was associated with reduced Nedd4-2 levels in the BNST.
  • Results [00215] Ubiquitination was first validated as leading to ACE2 downregulation and Nedd4-2 identified as a E3 ligase up-regulated in hypertension and promoting ACE2 ubiquitination. Mutation of lysine residues in the C-terminal of ACE2 was associated with increased activity and resistance to Ang-II-mediated degradation. Mice transfected with ACE2-5R in the BNST exhibited enhanced GABAergic input to the paraventricular nucleus (PVN) and reduction of hypertension. ACE2-5R expression was associated with reduced Nedd4-2 levels in the BNST.
  • PVN paraventricular nucleus
  • Nedd4-2 as the first E3 ubiquitin ligase involved in ACE2 ubiquitination in Ang-II-mediated hypertension.
  • Angiotensin-converting enzyme 2 is a member of the renin– angiotensin system (RAS), primarily involved in the conversion of the vasoconstrictor octapeptide angiotensin (Ang)-II to the vasodilatory heptapeptide Ang-(1-7).
  • RAS angiotensin system
  • Ang vasoconstrictor octapeptide angiotensin
  • Ang-II vasodilatory heptapeptide Ang-(1-7).
  • Decreases in cellular ACE2 levels have been associated with cardiovascular diseases like hypertension and diabetes, while overexpression of ACE2 has been shown to have beneficial effects in Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 preventing these diseases.
  • Ubiquitination is a general post-translational modification of proteins consisting of the addition of ubiquitin, a 76-amino-acid polypeptide, to substrate proteins, leading to either degradation in proteasomes or digestion in lysosomes.
  • the latter is typical for plasma membrane proteins and is of utmost importance in the regulation of cellular signaling.
  • Ubiquitin is covalently attached by its C-terminus to specific lysine residues on the target protein, 8,9 a process mediated by the sequential action of three types of enzymes: E1 ubiquitin-activating enzymes, E2 ubiquitin-conjugating enzymes, and E3 ubiquitin ligases.10Ubiquitin is first activated by E1 in an adenosine triphosphate (ATP)-dependent manner and then transferred to a cysteine residue at the active site of E2. Finally, the E3 ligase directly or indirectly catalyzes the covalent attachment of ubiquitin to the target protein.
  • E1 ubiquitin-activating enzymes E2 ubiquitin-conjugating enzymes
  • E3 ubiquitin ligases E1 ubiquitin-activating enzymes
  • the human genome encodes two E1 enzymes, about 60 different E2 enzymes, and more than 600 E3 ubiquitin ligases.
  • Ubiquitin can be attached as single or multiple residues to the substrate protein, resulting in mono- or poly-ubiquitination, respectively, and is essential for controlling the expression level of substrate proteins.
  • the brain RAS contributes to the regulation of cardiovascular function, and overactivation of this system, notably in hypertension, is well known to lead to enhanced pre- Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 sympathetic activity of glutamatergic neurons in forebrain nuclei, such as the paraventricular nucleus (PVN).
  • PVN paraventricular nucleus
  • ACE2 is expressed on GABAergic neurons and a lack of ACE2 leads to impaired inhibitory input to the PVN, leading to enhanced sympathetic activity to peripheral end organs.
  • the activity of pre-sympathetic PVN neurons is under the influence of GABAergic input originating from outside the PVN.
  • the bed nucleus of the stria terminalis (BNST) is a region rich in GABAergic neurons known to regulate cardiovascular parameters, notably during stress.
  • BNST bed nucleus of the stria terminalis
  • Neural precursor cell-expressed developmentally down-regulated protein 4-2 (Nedd4-2) as an E3 ubiquitin ligase targeting lysine residues in the carboxy tail of ACE2.
  • PYR-41 a cell-permeable inhibitor of E1 ubiquitin-activating enzymes (50 ⁇ M for 2 h), did not affect basal ACE2 activity or expression ( Figure 1, panels C and D).
  • pre-treatment with PR-619 a broad- spectrum reversible inhibitor of cysteine-reactive deubiquitinating enzymes (20 ⁇ M, 6 h)
  • Nedd4-2 also known as NEDD4L
  • NEDD4L Nedd4-2
  • FIG. 2 panel A A predictive bioinformatic analysis, to identify key E3 ubiquitin ligases involved in ACE2 ubiquitination, revealed that Nedd4-2 (also known as NEDD4L) has the highest confidence level for interaction with ACE2 ( Figure 2, panel A) after MDM2, another E3 ligase previously reported to ubiquitinate ACE2. 6
  • Nedd4-2 recognition motifs were identified within the ACE2 amino acid sequence, including two in the C-terminal, next to multiple lysine residues ( Figure 2, panel B).
  • a parallel proteomic analysis was performed using hypothalamic samples isolated from mice infused with Ang-II.
  • Nedd4-2 was highlighted as a positive hit with potential changes in expression affected by both sex and hypertension (Figure 2, panel C).
  • Nedd4-2 and ACE2 protein expression levels were assessed in various organs affected by neurogenic hypertension. Basal ACE2 expression was higher in the brain (Figure 2, panel D) and heart (Figure 2, panel E) of males, but Nedd4-2 was not different between sexes in these tissues. In the kidney, however, lower Nedd4-2 levels in females were associated with higher ACE2 expression (Figure 2, panel F).
  • Ang-II-mediated neurogenic hypertension which was more pronounced in males than in females (Table 1), was associated with a strong Nedd4-2 up- regulation, mostly in males, and a parallel reduction in ACE2 levels in all tissues.
  • ACE2 was reduced in Ang-II-infused females, this was only associated with an up- regulation of Nedd4-2 in the heart, suggesting that ACE2 down- regulation in females might be independent of Nedd4-2.
  • Nedd4-2 up-regulation in hypertensive patients and the parallel reduction in ACE2 expression were only observed in the left ventricle of African American males, with no difference in Caucasian donors (Figure 8). While Nedd4-2 up-regulation was also observed in hypertensive African American females, it was not associated with a reduction in ACE2 levels ( Figure 2, panel G), pointing again to the lack of involvement of Nedd4-2 in ACE2 ubiquitination in females. [00231] Table 2. List of donated human cardiac samples.
  • AFib atrial fibrillation
  • CAD coronary artery disease
  • CHF chronic heart failure
  • GERD gastroesophageal reflux disease
  • HL hyperlipidemia
  • DM diabetes mellitus
  • MI myocardial infarction
  • PTSD post-traumatic stress disorder
  • T1DM type 1 diabetes mellitus
  • T2DM type 2 diabetes mellitus
  • SA substance abuse.
  • HAEC aorta endothelial cells
  • Nedd4-2 siRNA significantly knocked down the expression of the E3 ubiquitin ligase and resulted in a restoration of ACE2 levels that were no longer reduced by Ang-II treatment ( Figure 3D).
  • Ubiquitination-resistant ACE2 exhibits enhanced activity Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 [00236] Since Nedd4-2 has 13 known and 2262 predicted high-confidence substrates in the mouse, including ACE, we focused our targeting strategy on ACE2 ubiquitination rather than Nedd4-2 itself. Based on the predicted interaction of Nedd4-2 with the ACE2 carboxy tail ( Figure 2, panel B), we next designed an ACE2 mutant resistant to Nedd4-2 ubiquitination. Ubiquitination takes place primarily at lysine sites embedded in the intracellular part of the protein.
  • Human ACE2 has a short intracellular C-terminus consisting of 43 amino acids, among which five lysine residues constitute putative ubiquitination sites. These residues are also located next to one of the four predicted Nedd4-2 recognition motifs ( Figure 4, panel A). To determine the role of these lysine residues in the regulation of ACE2 expression levels and activity, we generated mutants in which lysine residues were substituted by arginine, another positively charged amino acid that cannot be ubiquitinated. 16 The first five mutants had a single lysine mutated to arginine ( Figure 4, panel A), while the sixth mutant ( ⁇ 6 or ACE2-5R) included all five mutations.
  • ACE2-5R not only is resistant to Ang-II-mediated ubiquitination but also exhibits enhanced activity compared to native ACE2. Accordingly, ACE2-5R was selected for in vivo targeting of ACE2 ubiquitination and packaged into a commercial adeno-associated viral delivery system (Figure 4, panel D). Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 [00237] ACE2 is expressed on GABAergic neurons [00238] Having generated a new gene therapy tool, the next set of experiments aimed at validating the injection site for optimum targeting of ACE2 ubiquitination.
  • ACE2 immunoreactivity was only detected on GABAergic cell bodies and was undetectable on the outer edge of the BNST where GABAergic neurons are absent.
  • BP blood pressure
  • unilateral photoactivation of neuronal cell bodies in the dorsal BNST was performed in anesthetized Vgat-cre mice using a blue LED light (473 nm, 1–10 Hz, 1 min).
  • ACE2-5R enhances the GABAergic inhibitory tone
  • C57BL6/J male mice were injected bilaterally with AAV- hACE2-5R or AAV-GCaMP-6S as the control virus. Six weeks were allowed for viral expression before chronic infusion with Ang-II to induce neurogenic hypertension.
  • BP was recorded in anaesthetized mice Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 following blockade of GABAA receptors in the PVN.
  • Removal of GABAergic input to the PVN following bilateral bicuculline injections resulted in an immediate rise in BP that was exacerbated in hACE2-5R mice infused with Ang-II ( Figure 6, panel C). This suggests that prevention of ACE2 ubiquitination in the BNST resulted in enhanced GABAergic input to the PVN, capable of blunting the development of hypertension.
  • Nedd4-2 As a mediator of ACE2 ubiquitination and we propose a novel cellular mechanism behind the development of neurogenic hypertension. Specifically, we demonstrate that Ang-II mediates Nedd4-2 up- Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 regulation in experimental hypertension, which in turn promotes ACE2 ubiquitination and degradation. Nedd4-2 up-regulation was also observed in hypertensive patients.
  • ACE2 is a cellular receptor for SARS-CoV-2, the coronavirus responsible for COVID-19 disease, has exponentially increased research aimed at understanding the mechanisms controlling its expression levels and subcellular localization. Both Ang-II and SARS-CoV-2 have been shown to induce AT 1 R-dependent internalization of plasma membrane ACE2 followed by a decrease in its total cellular levels. 4,5 Based on our initial findings that ACE2 is ubiquitinated in basal conditions, 4 we hypothesized that this post-translational modification is responsible for lysosomal targeting of the enzyme in neurogenic hypertension. However, only a few studies have attempted to identify E3 ligases involved in ACE2 ubiquitination, and none have investigated this interaction in neurogenic hypertension.
  • Nedd4-2 belongs to the HECT-containing subfamily of E3 ligases and is involved in the regulation of cell proliferation, viral budding, and intracellular trafficking. These ligases modulate G protein-coupled receptor activity either through direct interaction or via binding to ⁇ -arrestin.
  • Nedd4-2 is a well-known E3 ubiquitin–protein ligase controlling cell surface expression of kidney epithelial Na + channels (ENaC), and impaired function of Nedd4-2 is associated with salt-sensitive hypertension.
  • Nedd4-2 may contribute to alterations in cardiovascular function, namely by decreasing ACE2 expression levels and activity.
  • This effect requires the enzymatic activity of Nedd4-2 as its catalytically inactive mutant 15 had no effect on Ang-II-induced ACE2 down- regulation ( Figure 3, panels A and B).
  • Ang-II treatment enhanced co- localization between ACE2 and Nedd4-2, suggesting that AT 1 R stimulation promotes ACE2 ubiquitination, at least partially, through Nedd4-2. Whether or not these effects are limited only to Nedd4-2 out of the large family of E3 ubiquitin ligases remains to be determined.
  • Nedd4-2 The sex- specific differences in Nedd4-2 expression are consistent with previous reports of Nedd4-2 gene polymorphisms associated with hypertension in males and the influence of oestrogens on reduced Nedd4-2 gene expression in the brain of females. 21,22 Due to its role in ENaC ubiquitination, Nedd4-2 has been studied extensively in the context of salt-sensitive hypertension, which is thought to be more prevalent in females than males. 23 In addition, polymorphisms of Nedd4-2 have been associated with hypertension in African Americans and other ethnic groups. 24–26 Accordingly, it is thought that mutation or a lack of Nedd4-2 results in elevated BP due to reduced ENaC ubiquitination. Our study differs from these observations.
  • the BNST is a neurochemically heterogeneous region, also known as the ‘extended amygdala’, which plays a role in cardiovascular responses to stress. 13 Most GABAergic neurons project to the parvocellular cluster of the PVN and provide an inhibitory tone to glutamatergic pre-sympathetic neurons. In addition, increased neuronal activity in the PVN has been reported following lesions of GABAergic cells within the anterior BNST, 29 suggesting that the BNST could differentially modulate autonomic responses to stressors. While stress-related cardiovascular responses involving baroreflex mechanisms have been reported following pharmacological activation or inhibition of the BNST, 13,30 the role of ACE2 ubiquitination in the BNST in the regulation of BP has never been investigated.
  • E3 ubiquitin ligases have previously been reported to affect GABAergic neurotransmission, leading to the modification of adaptor proteins and secondary signaling pathways, resulting in an increased or decreased inhibitory tone. 31,32
  • the BNST is also known to contain AT1R, and Ang-II regulates neuronal activity in this region. 30,33,34 Consistent with our observations, activation of AT1R in the BNST during Ang-II-mediated hypertension up- regulated Nedd4-2, similar to that observed in HEK293T and endothelial cells, which in turn reduced ACE2 expression on the cell surface and likely affected the conversion of Ang-II to Ang-(1-7).
  • Nedd4-2 could contribute to the excitatory activity of PVN neurons and downstream sympathetic activity in hypertension. Nedd4-2 has previously been shown to contribute to the activity of excitatory neurons, notably by affecting the expression of ion channels and cell surface proteins. 37 However, the role of Nedd4-2 in the brain is complex as it involves multiple and often opposite mechanisms.
  • Nedd4-2 Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 ubiquitination, including in the brain, is known to be associated with an up-regulation of ENaC, resulting in salt-induced hypertension.
  • Nedd4-2 knockdown also leads to reduced glutamate transporter ubiquitination and increased glutamate uptake, 39 possibly preventing glutamate neuroexcitability that is associated with reduced ACE2 activity. 40 Therefore, using recombinant hACE2-5R to control neurogenic hypertension might be a better therapeutic approach than interfering with Nedd4-2 expression.
  • Nedd4-2 as a new E3 ligase targeting ACE2 in neurogenic hypertension.
  • Nedd4-2 is up-regulated by elevated Ang-II levels and promotes ACE2 ubiquitination and degradation.
  • Ubiquitination of ACE2 on GABAergic neurons located in the BNST results in a dampening of the inhibitory input to pre-sympathetic neurons in the PVN, thus contributing to the development of hypertension.
  • mice were housed in a temperature ( ⁇ 25 oC) and humidity-controlled facility under a reversed 12-hour dark/light cycle, fed standard mouse chow (Envigo, iOS Teklab Extruded Rodent Diet 2019S, Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 Huntingdon, UK) and water ad libitum.
  • HAEC Primary human aortic endothelial cells
  • PCS-100-041 endothelial cell growth kit-VEGF
  • Neuro2A cells (#CCL-131, ATCC) were seeded in 6 well plates with complete media including eagle's minimum essential medium (EMEM, #30- 2003, ATCC), 10% Heat inactivated fetal bovine serum (#10082, Gibco), 1.5 g/L sodium bicarbonate (#25080, Gibco), 0.1 mM non-essential amino acids (Cat: 11140, Gibco), 1.0 mM sodium pyruvate (#11360, Gibco), 1% Pen-Strep (#15140, Gibco).
  • EMEM eagle's minimum essential medium
  • EMEM Heat inactivated fetal bovine serum
  • 1.5 g/L sodium bicarbonate (#25080, Gibco)
  • 0.1 mM non-essential amino acids (Cat: 11140, Gibco)
  • 1.0 mM sodium pyruvate (#11360, Gibco)
  • Pen-Strep (#15140, Gibco).
  • Plasmid transfection HEK293T cells were seeded in 6 well plates and transfected with the following plasmids: AT1R (gift from Dr.
  • the transfection medium was replaced with complete medium for 24 h and subsequently the cells were starved in Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 OptiMEM (#11058021, Thermo Fisher) without phenol red and FBS for 24 h.
  • the cells were then exposed to Ang-II (100 nM) or medium (control) for 4 h, after which the cells were harvested for assessment of ACE2 enzyme activity and ACE2 protein level.
  • Ang-II 100 nM
  • control medium
  • a similar protocol was used in another set of cells for immunohistochemistry.
  • siRNA transfection [00264] HAEC (#CC-2535, Lonza) were seeded into a 6 well plate at 60-80% confluency in reduced serum media (Opti-MEM, #31985062, Gibco) for 24 h. NEDD4-2 siRNA (10 ⁇ M, #s23571, Invitrogen) or a negative control siRNA (10 ⁇ M, #ASO2J03U, Invitrogen), and 3 ⁇ l lipofectamine RNAiMAX transfection reagent complexes were incubated for 5 min at room temperature (RT), added to the cells and left for 24 h.
  • RT room temperature
  • Ang-II 100 nM for 4 h, # A9525, Sigma Aldrich
  • Ang-II 100 nM for 4 h, # A9525, Sigma Aldrich
  • 4X Laemmli buffer 4% SDS, 10% 2-mercaptoethanol, 20% glycerol, 0.004% bromophenol blue, 0.125 M Tris-HCl
  • the samples were separated by SDS-PAGE and transferred onto polyvinylidene difluoride membranes.
  • the membranes were probed with antibodies against ACE2 (1:500, Santa Cruz #sc-73668), NEDD4-2 (Thermo Fisher Scientific, #2F6H6) and ⁇ -actin (Santa Cruz, # sc-8432). Primary antibodies were used at 1:500 dilutions and HRP-conjugated secondary antibodies (Cell Signaling) were used at 1:10,000 dilutions. The signal was detected using ECL Plus (Thermo Fisher Scientific). [00267] Immunoprecipitation was performed as previously.
  • HEK293T cells were cultured on 10 cm2 dishes and transfected at ⁇ 80% confluency with 6 ⁇ g of GFP- tagged ACE2 for 48 h, 6 ⁇ g HA-ubiquitin and 6 ⁇ g AT1R plasmids, fetal bovine serum Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 (FBS) being omitted during the last 24 h.
  • HEK293T and HAEC were seeded on poly-L-lysine-coated cover slips placed in 6 well plates. After 24 h, the cells were rinsed with 1X PBS, and fixed with 4% paraformaldehyde at RT for 15 min. The cells were washed twice with 1X glycine PBS (250 mM Glycine in 1X PBS) at RT for 15 min. Further, the cells were treated with permeabilization buffer (20 ⁇ L X-100 triton in 10 mL 1X PBS) at RT for 15 min then washed with 1X PBS at RT for 15 min.
  • blocking was carried out using 10% normal horse serum + 0.3% triton X-100 at RT for 30 min.
  • the blocking solution was replaced with primary antibody (ACE2, NEDD4-2) diluted to 1:500 in 2% normal horse serum + 0.3% triton X-100 at 4 °C overnight.
  • the cells were further washed three times with PBS at RT for 10 min.
  • the cells were treated with respective secondary antibodies at 1:1000 dilution in 2% normal horse serum + 0.3% Triton X-100 at RT for 1 h.
  • mice were anesthetized with avertin (2,2,2- Tribromoethanol, 200 ⁇ g/g of body weight) prior to euthanasia. Avertin was chosen over ketamine/xylazine to avoid excessive bradycardia and ensure better tissue perfusion.
  • mice were transcardially perfused with 4% paraformaldehyde in PBS.
  • the brain was collected and immersed in 4% paraformaldehyde for 1 h at 4 °C then transferred to 30% sucrose at 4 °C until processed.
  • Coronal sections were cut at 30 ⁇ m and mounted on glass slides before being exposed to blocking buffer (2% normal horse serum). Sections were incubated overnight with primary antibodies at 4 °C; goat anti-hACE2 (1:500, #AF93, R&Dsystems) followed by a donkey anti-goat Alexa Fluor 488 (1:500, #A-11055, Thermo Fisher Scientific) secondary antibody for 4 h.
  • ACE2 activity assay HEK293T cells and tissue samples were processed for ACE2 activity, as reported previously. 16 Briefly, the cells or ground-up tissue were suspended in 0.5% Triton X-100 in ACE2 reaction buffer containing 1 M NaCl, 0.5 mM ZnCl2, 75 mM Tris ⁇ HCl and 100 ⁇ M Mca-YVADAPK(Dnp). Fluorescence emission at 405 nm, after excitation at 320 nm, was measured and the slope of fluorescence development between 10 and 120 min of incubation was calculated.
  • Equal amounts of proteins were loaded and analyzed on a capillary-based immunoassay platform (ProteinSimple, San Jose, CA) as per the manufacturer's instructions using a 12–240 kDa separation module (#SM-W004, Bio-Techne R&D Systems).
  • the samples were diluted to 0.5 ⁇ g/ ⁇ l concentration in the sample buffer, incubated with a fluorescent master mix (#PS-ST01EZ, ProteinSimple) and heated at 95 °C for 5 min.
  • the biotinylated protein ladder (#PS-ST01EZ, Protein Simple), samples, blocking reagent (#042-203, ProteinSimple), primary antibodies: ACE2 (#sc-390581, Santa Cruz Biotechnology; #ab239924, Abcam, 1:50, #21115-1-AP, Thermo Fisher for mouse tissues and #ab15348, Abcam for HAEC), GAPDH (#ab-9483, Abcam, 1:50), Mas1 receptor (#ab235914, Abcam, 1:50) and NEDD-2 (#ab245522, Abcam, 1:100), AT1R (#PA5-20812, Invitrogen, 1:50) and MDM2 (#700555, Invitrogen, 1:10) were used.
  • HRP-conjugated secondary antibodies (#042-205, #042-206, and #043-522-2, ProteinSimple) and the luminol- peroxide mixture (#043-311 and #043-379, ProteinSimple) as chemiluminescent substrate were added.
  • the plate and cartridges were loaded into the Wes/Jess units with the following setting: stacking and separation at 475 V for 30 min; blocking reagent for 5 min; primary and secondary antibody both for 30 min.
  • ACE2 Mas, MDM2 and AT1R proteins were normalized to total protein using replex and total protein detection modules (# RP-001 and # DM-TP01, ProteinSimple). Compass software was used to process and analyze the results.
  • Bioinformatic analysis and proteomics [00276] The E3 ubiquitin ligases predictive bioinformatic analysis was performed using UbiBrowser 1.0 (http://ubibrowser.bio-it.cn/ubibrowser/). 17 Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 [00277] Discovery-based proteomics using tandem mass tags (TMTpro) and liquid chromatography mass spectrometry: samples were prepared for discovery-based quantitative proteomic analysis by the addition of SDS to 1% and sonicated until completely homogenous. The protein concentration was determined using BCA protein assay kit using an eight-point standard curve.
  • Protein sample was prepared for trypsin digestion by reducing the cysteines with tris(2-carboxyethyl)phosphine followed by alkylation with Iodoacetamide. After Chloroform-Methanol precipitation, each protein pellet was digested with 1 ⁇ g trypsin overnight at 37 °C. The digested product was labeled using 2 - TMTpro 16 plex reagents Sets (Thermo Fisher Scientific), utilizing the 126 isotopologue as the common pooled internal control, according to the manufacturer’s protocol.
  • TMTpro data acquisition utilized an MS3 approach for data collection, as previously described.
  • Static modifications included TMTpro reagents on lysine and N-terminus (+304.207), carbamidomethyl on cysteines (+57.021), dynamic phosphorylation of serine, threonine and tyrosine (+79.966 Da), and dynamic modification of oxidation of methionine (+15.9949).
  • Vgat-IRES-cre mice were injected stereotaxically with a cre-dependent humanized ChR2 with H134R mutation fused to eYFP (pAAV1-EF1 ⁇ - double floxed-ChR2(H134R)-eYFP-WPRE-HGHpA, 100 nL, 7x10 12 vg/mL, catalog # 20298-AAV1, Addgene), bilaterally into the BNST, (relative to bregma, AP: 0.14 mm, ML: ⁇ 0.8 mm, DV: -4.3 mm
  • the mutant 6 human ACE2 (hACE2-5R) construct was packaged in an adeno- associated viral vector (5 ⁇ 10 12 GC/mL, #CS-U1285-AV02, AAV Prime Genecopoeia) under the control of a broad scope EF1 ⁇ promoter ( Figure 4D).
  • AAV-hACE2-5R Prior to injection in the BNST, AAV-hACE2-5R was mixed with AAV-GCaMP-6S in a 4:1 ratio for postmortem tracking of the injection site. The mixture was injected bilaterally in the BNST as described above. Six weeks after virus injection the mice were subjected to acute or chronic blood pressure (BP) recording protocols.
  • BP blood pressure
  • ChR2-expressing mice were perfused with 4% PFA, as above, and the brains were sectioned in a cryostat. Sections (30 ⁇ m) were observed under a fluorescent microscope (Nikon A1R, NIS-Element’s software) to verify that the injection successfully targeted the BNST. Only subjects with GFP fluorescence overlapping with the BNST ( Figure 5A) were included in the analysis. Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 [00282] For GCaMP6S-injected mice, the BNST was manually dissected for protein extraction from 4 consecutive sections of 250 ⁇ m (relative to bregma, AP: 0.74 to -0.22 mm).
  • mice were anesthetized with 2% isoflurane and a pressure catheter (#SPR-1000, Millar Mikro-Tip, ADInstruments) was inserted into the left common carotid artery and pushed towards the aorta.
  • Pulsatile BP and heart rate (HR) signals were recorded using PowerLab data acquisition system and LabChart8 pro software (ADInstrument, Australia).
  • Mice were then positioned on a stereotaxic frame (Stoelting) for PVN injections (Relative to bregma, AP: -0.5 mm, ML: -/+ 0.25 mm, DV: -4.75 mm), as described previously.
  • Ang-II 450 ng/kg/min, #A9525, Sigma Aldrich
  • vehicle (0.9% saline) infusion was performed by implanting subcutaneous osmotic mini pumps (#1004, Alzet) for a period of 4 weeks in two separate cohorts. After completion of chronic recordings, the mice were anesthetized with isoflurane 2% and euthanized by decapitation. The brain was then collected from each group (6 mice/group) and frozen over dry ice before BNST dissection as described above.
  • Angiotensin II mediates angiotensin converting enzyme type 2 internalization and degradation through an angiotensin II type I receptor-dependent mechanism. Hypertension 2014;64:1368–1375. Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 [00297] 5.
  • ACE2/Ang-(1-7)/Mas pathway in the brain the axis of good.
  • Piezo2 channel in nodose ganglia neurons is essential in controlling hypertension in a pathway regulated directly by Nedd4-2. Pharmacol Res 2021;164: 105391. [00320] 28. Xia H, Feng Y, Obr TD, Hickman PJ, Lazartigues E. Angiotensin II type 1 receptor-mediated reduction of angiotensin-converting enzyme 2 activity in the brain impairs baroreflex function in hypertensive mice. Hypertension 2009;53:210–216. [00321] 29.Radley JJ, Gosselink KL, Sawchenko PE. A discrete GABAergic relay mediates medial prefrontal cortical inhibition of the neuroendocrine stress response.
  • Trophic factor BDNF inhibits GABAergic signaling by facilitating dendritic enrichment of SUMO E3 ligase PIAS3 and altering gephyrin scaffold. J Biol Chem 2022;298: 101840. [00324] 32. Suthakaran N, Wiggins J, Giles A, Opperman KJ, Grill B, Dawson-Scully K. O-GlcNAc transferase OGT-1 and the ubiquitin ligase EEL-1 modulate seizure susceptibility in C. elegans. PLoS One 2021;16:e0260072. [00325] 33. Xu Z, Herbert J.
  • ACE2 ubiquitination as a target for salt-sensitive hypertension [00334] ACE2 is part of the Brain Renin-Angiotensin System [00335] In the 1970’s, researchers started identifying components of the Renin- Angiotensin System (RAS) in individual tissues, as illustrated in this cartoon, supporting the concept of local renin angiotensin systems See Lavoie, J. L. and Sigmund C.D.
  • RAS Renin- Angiotensin System
  • ACE2 a homologue of ACE, was discovered a decade ago and is now recognized as a component of the RAS.
  • Our lab previously identified the presence of ACE2 in the mouse brain, notably in regions involved in the central regulation of blood pressure, like the SFO, PVN, RVLM, NTS and the DMNX. Therefore ACE2 appears to be in a position to modulate blood pressure regulation.
  • Ang-II promotes ACE2 translocation from membrane to cytoplasm via ubiquitination
  • ACE2-GFP was strongly co-localized with Wheat Germ Agglutinin, a plasma membrane marker showing that in baseline conditions, ACE2 is predominantly localized at the plasma membrane.
  • ACE2 localization at the plasma membrane was diminished as the enzyme displayed accumulation within the cytoplasm.
  • ACE2 a lysosomal marker.
  • ACE2 did not co-localize with Rab7 in control conditions, but displayed significant co-localization with the lysosomal marker following Ang-II treatment suggesting that ACE2 is internalized from its functional site and subsequently targeted for lysosomal degradation in the presence of Ang-II.
  • Ang-II mediated hypertension is associated with ubiquitination of ACE2.
  • Nedd4-2 is upregulated in hypertension, mostly in males, and contributes to ACE2 ubiquitination.
  • ACE2 is expressed on GABAergic neurons within the BNST which maintains Docket No.: 2932719-223WO1 Date of filing: April 10, 2024 an inhibitory tone over the PVN. Prevention of ACE2 ubiquitination prevents the development of salt-sensitive hypertension. ***** EQUIVALENTS [00341] Those skilled in the art will recognize, or be able to ascertain, using no more than routine experimentation, numerous equivalents to the specific substances and procedures described herein. Such equivalents are considered to be within the scope of this invention, and are covered by the following claims.

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Animal Behavior & Ethology (AREA)
  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Veterinary Medicine (AREA)
  • Medicinal Chemistry (AREA)
  • Public Health (AREA)
  • Pharmacology & Pharmacy (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Epidemiology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Cardiology (AREA)
  • Heart & Thoracic Surgery (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • General Chemical & Material Sciences (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Organic Chemistry (AREA)
  • Medicines That Contain Protein Lipid Enzymes And Other Medicines (AREA)

Abstract

La présente invention concerne des polypeptides ACE2 recombinants et des fragments de ceux-ci, des compositions les comprenant et des méthodes d'utilisation de ceux-ci pour traiter une maladie.
PCT/US2024/023899 2023-04-10 2024-04-10 Polypeptide ace2 recombinant et utilisations associées Pending WO2024215776A1 (fr)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US202363458396P 2023-04-10 2023-04-10
US63/458,396 2023-04-10

Publications (1)

Publication Number Publication Date
WO2024215776A1 true WO2024215776A1 (fr) 2024-10-17

Family

ID=93060116

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2024/023899 Pending WO2024215776A1 (fr) 2023-04-10 2024-04-10 Polypeptide ace2 recombinant et utilisations associées

Country Status (1)

Country Link
WO (1) WO2024215776A1 (fr)

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2007030937A2 (fr) * 2005-09-16 2007-03-22 Institut De Recherches Cliniques De Montreal/I.R.C.M. Proteines chimeres, lignees cellulaires comprenant celles-ci et dosages pour cribler des modulateurs de proteinase utilisant ces lignees cellulaires
WO2021188576A1 (fr) * 2020-03-16 2021-09-23 The Board Of Trustees Of The University Of Illinois Enzyme de conversion de l'angiotensine 2 modifiée et son utilisation

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2007030937A2 (fr) * 2005-09-16 2007-03-22 Institut De Recherches Cliniques De Montreal/I.R.C.M. Proteines chimeres, lignees cellulaires comprenant celles-ci et dosages pour cribler des modulateurs de proteinase utilisant ces lignees cellulaires
WO2021188576A1 (fr) * 2020-03-16 2021-09-23 The Board Of Trustees Of The University Of Illinois Enzyme de conversion de l'angiotensine 2 modifiée et son utilisation

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
PAYANDEH ZAHRA, RAHBAR MOHAMMAD REZA, JAHANGIRI ABOLFAZL, HASHEMI ZAHRA SADAT, ZAKERI ALIREZA, JAFARISANI MOSLEM, RASAEE MOHAMMAD : "Design of an engineered ACE2 as a novel therapeutics against COVID-19", JOURNAL OF THEORETICAL BIOLOGY., ACADEMIC PRESS, LONDON., GB, vol. 505, 1 November 2020 (2020-11-01), GB , pages 110425, XP093225227, ISSN: 0022-5193, DOI: 10.1016/j.jtbi.2020.110425 *

Similar Documents

Publication Publication Date Title
US20220333131A1 (en) Modulatory polynucleotides
KR102398039B1 (ko) 선택적 유전자 치료 발현 시스템
AU2014274457B2 (en) Capsid-modified, rAAV3 vector compositions and uses in gene therapy of human liver cancer
CN111787940B (zh) 使用工程化的去泛素化酶探测泛素依赖性细胞过程的组合物和方法
US20250049955A1 (en) Compositons and methods for the treatment of neurological disorders related to glucosylceramidase beta deficiency
CA3147742A1 (fr) Utilisation de la frataxine pour le traitement de la forme franco-canadienne du syndrome de leigh
Mohammed et al. Nedd4-2 up-regulation is associated with ACE2 ubiquitination in hypertension
JP2023536091A (ja) グルコシルセラミダーゼベータ欠損に関連する神経障害の治療のための組成物及び方法
US20220025065A1 (en) Lysosomal storage disorder biomarkers and methods of use thereof
TW202449167A (zh) 用於治療肌肉萎縮性脊髓側索硬化症之組成物及方法
Zhang et al. MLKL-USP7-UBA52 signaling is indispensable for autophagy in brain through maintaining ubiquitin homeostasis
WO2024215776A1 (fr) Polypeptide ace2 recombinant et utilisations associées
US20240216536A1 (en) Secreted ube3a for treatment of neurological disorders
WO2024052413A1 (fr) Vecteurs de beta-hexosaminidase
EP2951197A1 (fr) Procédés de traitement de troubles mitochondriaux et de troubles neurodégénératifs
KR20250156211A (ko) 글루코실세라미다제 베타 1 결핍증과 관련된 신경 장애의 치료를 위한 조성물 및 방법
EP3648789A1 (fr) Polypeptide mtmr2-s destiné à être utilisé dans le traitement de myopathies
WO2024197271A1 (fr) Ciblage de lipide lysosomal dans la maladie d'alzheimer
US20240034762A1 (en) Compositions and Methods For Inhibiting FGF23 Activity
WO2025231406A1 (fr) Procédés pour augmenter la transduction d'épendymocytes dans le cerveau
WO2025126153A2 (fr) Compositions et méthodes de traitement de maladies neurologiques à médiation par sod1
TW202334432A (zh) 用於治療核纖層蛋白病症(laminopathies)之lmna基因表現
WO2016112350A1 (fr) Procédés et compositions pour le diagnostic et le traitement de troubles du stockage lysosomal
HK40055788A (en) Compositions and methods for transport across the blood brain barrier
HK40080737A (en) Compositions and methods for targeted protein stabilization by redirecting endogenous deubiquitinases

Legal Events

Date Code Title Description
121 Ep: the epo has been informed by wipo that ep was designated in this application

Ref document number: 24789381

Country of ref document: EP

Kind code of ref document: A1

NENP Non-entry into the national phase

Ref country code: DE