WO2024253595A1 - MULTISPECIFIC ANTIGEN BINDING PROTEIN AGAINST EpCAM - Google Patents
MULTISPECIFIC ANTIGEN BINDING PROTEIN AGAINST EpCAM Download PDFInfo
- Publication number
- WO2024253595A1 WO2024253595A1 PCT/SG2024/050383 SG2024050383W WO2024253595A1 WO 2024253595 A1 WO2024253595 A1 WO 2024253595A1 SG 2024050383 W SG2024050383 W SG 2024050383W WO 2024253595 A1 WO2024253595 A1 WO 2024253595A1
- Authority
- WO
- WIPO (PCT)
- Prior art keywords
- sequence
- seq
- identity
- cdr
- chain variable
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Classifications
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K40/00—Cellular immunotherapy
- A61K40/10—Cellular immunotherapy characterised by the cell type used
- A61K40/11—T-cells, e.g. tumour infiltrating lymphocytes [TIL] or regulatory T [Treg] cells; Lymphokine-activated killer [LAK] cells
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K40/00—Cellular immunotherapy
- A61K40/30—Cellular immunotherapy characterised by the recombinant expression of specific molecules in the cells of the immune system
- A61K40/31—Chimeric antigen receptors [CAR]
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K40/00—Cellular immunotherapy
- A61K40/30—Cellular immunotherapy characterised by the recombinant expression of specific molecules in the cells of the immune system
- A61K40/33—Antibodies; T-cell engagers
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K40/00—Cellular immunotherapy
- A61K40/40—Cellular immunotherapy characterised by antigens that are targeted or presented by cells of the immune system
- A61K40/41—Vertebrate antigens
- A61K40/42—Cancer antigens
- A61K40/4202—Receptors, cell surface antigens or cell surface determinants
- A61K40/4203—Receptors for growth factors
- A61K40/4205—Her-2/neu/ErbB2, Her-3/ErbB3 or Her 4/ ErbB4
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K40/00—Cellular immunotherapy
- A61K40/40—Cellular immunotherapy characterised by antigens that are targeted or presented by cells of the immune system
- A61K40/41—Vertebrate antigens
- A61K40/42—Cancer antigens
- A61K40/4202—Receptors, cell surface antigens or cell surface determinants
- A61K40/421—Immunoglobulin superfamily
- A61K40/4211—CD19 or B4
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K40/00—Cellular immunotherapy
- A61K40/40—Cellular immunotherapy characterised by antigens that are targeted or presented by cells of the immune system
- A61K40/41—Vertebrate antigens
- A61K40/42—Cancer antigens
- A61K40/4254—Adhesion molecules, e.g. NRCAM, EpCAM or cadherins
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K40/00—Cellular immunotherapy
- A61K40/40—Cellular immunotherapy characterised by antigens that are targeted or presented by cells of the immune system
- A61K40/41—Vertebrate antigens
- A61K40/42—Cancer antigens
- A61K40/4261—Proteoglycans, e.g. glypican, brevican or CSPG4
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/2803—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
- C07K16/2809—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily against the T-cell receptor (TcR)-CD3 complex
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K16/00—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
- C07K16/18—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
- C07K16/28—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants
- C07K16/30—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants from tumour cells
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K39/00—Medicinal preparations containing antigens or antibodies
- A61K2039/505—Medicinal preparations containing antigens or antibodies comprising antibodies
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K2239/00—Indexing codes associated with cellular immunotherapy of group A61K40/00
- A61K2239/10—Indexing codes associated with cellular immunotherapy of group A61K40/00 characterized by the structure of the chimeric antigen receptor [CAR]
- A61K2239/11—Antigen recognition domain
- A61K2239/13—Antibody-based
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K2239/00—Indexing codes associated with cellular immunotherapy of group A61K40/00
- A61K2239/27—Indexing codes associated with cellular immunotherapy of group A61K40/00 characterized by targeting or presenting multiple antigens
- A61K2239/28—Expressing multiple CARs, TCRs or antigens
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
- C07K2317/21—Immunoglobulins specific features characterized by taxonomic origin from primates, e.g. man
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
- C07K2317/22—Immunoglobulins specific features characterized by taxonomic origin from camelids, e.g. camel, llama or dromedary
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/20—Immunoglobulins specific features characterized by taxonomic origin
- C07K2317/24—Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/30—Immunoglobulins specific features characterized by aspects of specificity or valency
- C07K2317/31—Immunoglobulins specific features characterized by aspects of specificity or valency multispecific
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/52—Constant or Fc region; Isotype
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/55—Fab or Fab'
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/50—Immunoglobulins specific features characterized by immunoglobulin fragments
- C07K2317/56—Immunoglobulins specific features characterized by immunoglobulin fragments variable (Fv) region, i.e. VH and/or VL
- C07K2317/569—Single domain, e.g. dAb, sdAb, VHH, VNAR or nanobody®
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/60—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments
- C07K2317/62—Immunoglobulins specific features characterized by non-natural combinations of immunoglobulin fragments comprising only variable region components
- C07K2317/622—Single chain antibody (scFv)
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/70—Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/70—Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
- C07K2317/73—Inducing cell death, e.g. apoptosis, necrosis or inhibition of cell proliferation
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/70—Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
- C07K2317/75—Agonist effect on antigen
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2317/00—Immunoglobulins specific features
- C07K2317/90—Immunoglobulins specific features characterized by (pharmaco)kinetic aspects or by stability of the immunoglobulin
- C07K2317/92—Affinity (KD), association rate (Ka), dissociation rate (Kd) or EC50 value
Definitions
- the present disclosure relates broadly to antigen binding proteins, variants and fragments thereof specific to Epithelial Cellular Adhesion Molecule (EpCAM).
- EpCAM Epithelial Cellular Adhesion Molecule
- the present disclosure encompasses the nucleotide and amino-acid sequences of 6 human antibodies, 5 llama antibodies and 1 humanized llama antibody, or the antigen-binding portions thereof, that specifically target human EpCAM, both in solution and on the surface of cells.
- multispecific antigen binding proteins such as bispecific T cell engagers (BiTEs), which bind to EpCAM and also other targets.
- Advanced therapeutics such as antibody-based or cell-based immunotherapies, offers a new paradigm in oncology, and hold immense potential for more effective treatments for cancers compared to conventional treatment strategies.
- antibody and cell-based therapies are increasingly gaining immense attention and investments for its development as a potential more promising standard of care for the treatment of cancer.
- BiTE bi-specific T-cell engager
- ADC antibody-drug conjugates
- cancer targeted therapies rarely cure patients with solid tumors.
- Cell-based therapy such as chimeric antigen receptor (CAR) T achieves great success in haematological malignancy but shows limited efficacy in treating solid tumors.
- EpCAM Epithelial cell adhesion molecule
- the presently disclosed fully human anti-EpCAM antibodies (1 B5, 1C1 , t d f , 1 D4, 1 E4 and 1 H6). despite their relatively low binding affinity, exhibited potent cytotoxic activity when used in a BiTE format to mediate target specific cell killing. Applications using the BiTE format can therefore overcome issues of immunogenicity and high toxicity/low tolerability brought by high-affinity non-human anti-EpCAM antibodies as shown by most prior arts.
- the nanobody format of BiTE have superior advantages: i) high stability; ii) large production yield; and iii) small gene size to be packaged in the lentivirus system to achieve high T cell transduction efficiency
- the present inventors have also generated anti-EpCAM nanobodies of llama-derived single-domain antibody fragments (VHH) against EpCAM, which can be fused to many different anti-CD3 T cell agonist antibodies via a flexible linker.
- VHH llama-derived single-domain antibody fragments
- These BiTE antibodies can be used for targeting EpCAM locally.
- CAR- T cells secreting anti-EpCAM BiTE the present inventors could achieve not only the specific tumor antigen directed T cell expansion but also tumor restricted expression of BiTE targeting a more widely expressed tumor antigen EpCAM to avoid toxicity brought by the traditional systemic delivery.
- a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a heavy chain variable region comprising: a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a light chain variable region comprising: a CDR-L1 comprising:
- QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
- QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
- CDR-L2 • QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-L2 comprising:
- LGS SEQ ID NO: 10
- LGS SEQ ID NO: 10
- AAS SEQ ID NO: 20
- a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto and a CDR-L3 comprising:
- MQALQTPYT SEQ ID NO: 11
- a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto SEQ ID NO: 11
- MQGLQSPWT SEQ ID NO: 15
- SEQ ID NO: 15 a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- QQSYIMPDT SEQ ID NO: 21 or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
- MQGLQTPYT SEQ ID NO: 23
- a heavy chain variable region comprising: a CDR-H1 comprising:
- GSIFSGND SEQ ID NO: 25
- GSIFSGND SEQ ID NO: 25
- GSSERFTS SEQ ID NO: 29
- a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-H2 comprising:
- ITSGGST SEQ ID NO: 26
- ITSGGST SEQ ID NO: 26
- ITNGGST SEQ ID NO: 30
- TNGRWSGDTYYAHH SEQ ID NO: 27
- a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto SEQ ID NO: 27
- MAGTS SEQ ID NO: 31
- MAGTS SEQ ID NO: 31
- TNGRWSGDTYYAHL SEQ ID NO: 33
- the antigen binding protein, variant or fragment thereof of comprises a heavy chain variable region selected from the group consisting of:
- a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a heavy chain variable region comprising: a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and comprises a light chain variable region comprising: a CDR-L1 comprising:
- QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
- QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
- CDR-L2 • QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-L2 comprising:
- LGS SEQ ID NO: 10
- LGS SEQ ID NO: 10
- AAS SEQ ID NO: 20
- a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto and a CDR-L3 comprising:
- MQALQTPYT SEQ ID NO: 11
- a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto SEQ ID NO: 11
- MQGLQSPWT SEQ ID NO: 15
- SEQ ID NO: 15 a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- QQSYIMPDT SEQ ID NO: 21 or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
- MQGLQTPYT SEQ ID NO: 23
- the antigen binding protein, variant or binding fragment thereof comprises a heavy chain variable region comprising: a CDR-H1 comprising:
- GSIFSGND SEQ ID NO: 25
- GSIFSGND SEQ ID NO: 25
- GSSERFTS SEQ ID NO: 29
- a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-H2 comprising:
- ITSGGST SEQ ID NO: 26
- ITSGGST SEQ ID NO: 26
- ITNGGST SEQ ID NO: 30
- a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto and a CDR-H3 comprising:
- TNGRWSGDTYYAHH SEQ ID NO: 27
- a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto SEQ ID NO: 27
- MAGTS SEQ ID NO: 31
- MAGTS SEQ ID NO: 31
- TNGRWSGDTYYAHL SEQ ID NO: 33
- the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and/or a light chain variable region selected from the group consisting of:
- a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a heavy chain variable region comprising: a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQSPWT (SEQ ID NO: 15) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a light chain variable region comprising: a CDR-L1 comprising QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a light chain variable region comprising: a CDR-L1 comprising QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising AAS (SEQ ID NO: 20) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising QQSYIMPDT (SEQ ID NO: 21) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQTPYT (SEQ ID NO: 23) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a heavy chain variable region comprising: a CDR-H1 comprising GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
- a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
- the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and a light chain variable region selected from the group consisting of:
- a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
- a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
- a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
- a heavy chain variable region comprising: a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity there
- the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region selected from the group consisting of:
- a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
- a heavy chain variable region comprising: a CDR-H1 comprising GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
- a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
- the antigen binding protein, variant or fragment thereof comprises a heavy chain variable domain and/or a light chain variable domain selected from the group consisting of:
- a light chain variable domain comprising DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQ SPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCM QALQTPYTFGQGTK (SEQ ID NO: 12) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- a light chain variable domain comprising EIVLTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQS PQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQ GLQSPWTFGQGTK (SEQ ID NO: 16) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- a light chain variable domain comprising DVVMTQSPLSLPVTPGESASISCRSSQSLLHSNRYNYLDWYLQKPGQ SPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCM QALQTPYTFGQGTK (SEQ ID NO: 18) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- DIQLTQSPSSLSASVGDRVTITCRASQSISDFLNWYQQKPGKAPKLLIY AASSLQTGVPSRFGGSGSGTEFTLTISSLQPEDLGTYYCQQSYIMPDT FGQGTK (SEQ ID NO: 22) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- a light chain variable domain comprising DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQ SPQLLIYLGSNRASGVPDRFSGSGSGTDFTLQISRVEAEDAGVYYCM
- QGLQTPYTFGQGTK (SEQ ID NO: 24 ) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- a heavy chain variable domain comprising QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 28) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- a heavy chain variable domain comprising QVQLQESGGGLVQPGGSLRLSGAASGSSERFTSVAWYRQAPGKERE LVAFITNGGSTRYTDPVKGRFTISRDNAKNTVYLQMNSLKAEDTAVYY CMAGTSWGQGTQ (SEQ ID NO: 32) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- (x) a heavy chain variable domain comprising QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHLWGQGTQ (SEQ ID NO: 34) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- a heavy chain variable domain comprising QVQLQESGGGLVQAGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 35) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- a heavy chain variable domain comprising QVQLQESGGGLVQAGDSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 36) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions; and a heavy chain variable domain comprising QVQLVESGGGLVQAGGSLRLSCAASGSIFSGNDMSWYRQAPGKGLE LVAVITSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY CTNGRWSGDTYYAHHWGQGTL (SEQ ID NO: 37 ) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%
- the antigen binding protein, variant or fragment thereof comprises a heavy chain variable domain and a light chain variable domain selected from the group consisting of:
- EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain comprising DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSP QLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQT PYTFGQGTK (SEQ ID NO: 12) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino
- a heavy chain variable domain comprising: EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain comprising
- EIVLTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQ LLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGLQSP WTFGQGTK (SEQ ID NO: 16) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
- DVVMTQSPLSLPVTPGESASISCRSSQSLLHSNRYNYLDWYLQKPGQSP QLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQT PYTFGQGTK (SEQ ID NO: 18) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions (iv) a heavy chain variable domain comprising:
- DIQLTQSPSSLSASVGDRVTITCRASQSISDFLNWYQQKPGKAPKLLIYA ASSLQTGVPSRFGGSGSGTEFTLTISSLQPEDLGTYYCQQSYIMPDTFG QGTK (SEQ ID NO: 22) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
- a heavy chain variable domain comprising: EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain
- DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSP QLLIYLGSNRASGVPDRFSGSGSGTDFTLQISRVEAEDAGVYYCMQGLQT PYTFGQGTK (SEQ ID NO: 24) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
- the antigen binding protein, variant or fragment thereof comprises a single domain heavy chain variable domain having a sequence:
- CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 35) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
- the antigen binding protein, variant or fragment thereof comprises a light chain constant domain having a sequence:
- RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG NSQESVAEQDSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQGLSSPVTK SFNRGEC (SEQ ID NO: 13) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
- RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK SFSRGEC SEQ ID NO: 14 or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
- the antigen binding protein, variant or fragment thereof is an IgG antibody, in particular an lgG1 antibody.
- the antigen binding protein, variant or fragment thereof is a multi-specific antigen binding protein, variant or fragment thereof, such as a bispecific antibody.
- the multi-specific antigen binding protein, variant or fragment thereof binds to an immune marker selected from the group consisting of CD3, NKG2D, CD4, CD8, CD16 and CD64.
- the antigen binding protein, variant or fragment thereof is a bispecific T cell engager (BiTE).
- the bispecific T cell engager comprises an anti- EpCAM Heavy chain antibody variable region (i.e. VHH) or a single chain variable fragment (scFv).
- VHH EpCAM Heavy chain antibody variable region
- scFv single chain variable fragment
- the antigen binding protein, variant or fragment thereof comprises a Fc region.
- the heavy chain variable domain is encoded by a nucleotide sequence comprising:
- CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACA CGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTT ACTATGCCCATCTCTGGGGCCAGGGGACCCAG (SEQ ID NO: 71) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
- TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGG ACCAAG SEQ ID NO: 49 or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
- TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGG ACCAAG SEQ ID NO: 55 or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
- the heavy chain and light chain variable domains are encoded by nucleotide sequences selected from the group consisting of:
- CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
- nucleotide sequence comprising:
- GACCAAG (SEQ ID NO: 61) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having I D- 20 nucleic acid substitutions;
- nucleotide sequence comprising:
- the single domain heavy chain variable domain is encoded by a nucleotide sequence comprising
- the light chain constant domain is encoded by a nucleotide sequence comprising
- a vector expressing the polynucleotide as described above.
- a host cell comprising the vector as described above.
- a cell expressing/secreting the antigen binding protein, variant of fragment thereof as described above.
- a cell expressing/secreting an immune cell engager which is specific to EpCAM which is specific to EpCAM.
- the immune cell engager is selected from the group comprising a T cell engager, an NK cell engager, a monocyte engager and a macrophage engager.
- the immune cell engager is a bispecific T cell engager (BITE), such as an inducible BiTE, non-inducible BiTE or a constitutive expression BiTE comprising the antigen binding protein, variant of fragment thereof as described above.
- BITE bispecific T cell engager
- the cell is an immune cell, for example selected from the group comprising a T cell, a macrophage, a monocyte and an NK cell.
- the immune cell is a T-cell, in particular a CAR T-cell.
- the cell is a stem cell, for example selected from the group comprising a mesenchymal stem cell, a neural stem cell and a pluripotent stem cell, such as an induced pluripotent stem cell (iPSC).
- a stem cell for example selected from the group comprising a mesenchymal stem cell, a neural stem cell and a pluripotent stem cell, such as an induced pluripotent stem cell (iPSC).
- iPSC induced pluripotent stem cell
- composition comprising the antigen binding protein, variant or fragment thereof and/or cell as described above.
- an antigen binding protein, variant or fragment thereof, cell or a composition as described above for use in treatment of a disease is provided.
- a method of treating a disease in a subject in need thereof comprising administering to the subject an antigen binding protein, variant or fragment thereof, cell or a composition as described above.
- the antigen binding protein, variant or fragment thereof, cell or the composition as described above in the manufacture of a medicament for preventing and/or treating a disease.
- the disease is a proliferative disease such as a tumor or cancer.
- a method of diagnosis / determining the prognosis or presence of a solid tumor originating from epithelium comprising detecting the expression of high EpCAM on the solid tumor using the antigen binding protein, variant or fragment thereof or a composition as described above.
- antigen binding protein herein is used in the broadest sense and encompasses various antibody structures, including but not limited to monoclonal antibodies, polyclonal antibodies, multi-specific antibodies as long as they exhibit the desired antigen-binding activity.
- antibody as used herein relates to whole (i.e., full length) antibodies (i.e., comprising the elements of two heavy chains and two light chains) and functionally active fragments thereof (i.e., molecules that contain an antigen binding domain that specifically binds an antigen, also termed antibody fragments or antigen-binding fragments).
- functionally active fragments thereof i.e., molecules that contain an antigen binding domain that specifically binds an antigen, also termed antibody fragments or antigen-binding fragments.
- antibody encompasses monovalent, i.e., antibodies comprising only one antigen binding domain (e.g., one- armed antibodies comprising a full-length heavy chain and a full-length light chain interconnected, also termed “half-antibody”), and multivalent antibodies, i.e., antibodies comprising more than one antigen binding domain, e.g., bivalent.
- antigen binding fragment refers to functionally active antibody binding fragments including but not limited to Fab, modified Fab, Fab', modified Fab', F(ab')2, Fv, single domain antibodies, scFv, Fv, bi, tri or tetra-valent antibodies, Bis-scFv, diabodies, triabodies, tetrabodies and epitope-binding fragments of any of the above.
- binding fragment refers to a fragment capable of binding a target peptide or antigen with sufficient affinity to characterize the fragment as specific for the peptide or antigen.
- mAb refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e. each individual of a monoclonal antibody preparation are identical except for possible mutations (e.g., naturally occurring mutations), that may be present in minor amounts. Certain differences in the protein sequences linked to post-translational modifications (for example, cleavage of the heavy chain C-terminal lysine, deamidation of asparagine residues and/or isomerization of aspartate residues) may nevertheless exist between the various different antibody molecules present in the composition. Contrary to polyclonal antibody preparations, each monoclonal antibody of a monoclonal antibody preparation is directed against a single determinant on an antigen.
- diabody refers to two Fv pairs, a first VH/VL pair and a further VH/VL pair which have two inter-Fv linkers, such that the VH of a first Fv is linked to the VL of the second Fv and the VL of the first Fv is linked to the VH of the second Fv.
- trimer (also referred to a Fab(scFv)2) as employed herein refers to a Fab fragment with a first scFv appended to the C-terminal of the light chain and a second scFv appended to the C-terminal of the heavy chain.
- tetrabody refers to a format similar to the diabody comprising fours Fvs and four inter-Fv linkers.
- multivalent antibody refers to an antibody comprising more than one antigen binding domain e.g., bivalent.
- Fv refers to two variable domains of full-length antibodies, for example co-operative variable domains, such as a cognate pair or affinity matured variable domains, i.e., a VH and VL pair.
- scFv refers to single chain variable fragment which is a fusion protein of the variable regions of the heavy and light chains of the immunoglobulins, connected with a short linker peptide of ten to about 25 amino acids.
- bis-scFv as described herein refers to a bispecific scFv.
- dsscFv or “disulphide-stabilised single chain variable fragment” as employed herein refers to a single chain variable fragment which is stabilised by a peptide linker between the VH and VL variable domain and also includes an inter-domain disulphide bond between VH and VL.
- DVD-lg also known as dual V domain IgG refers to a full-length antibody with 4 additional variable domains, one on the N-terminus of each heavy and each light chain.
- Fab refers to as used herein refers to an antibody fragment comprising a light chain fragment comprising a VL (variable light) domain and a constant domain of a light chain (CL), and a VH (variable heavy) domain and a first constant domain (CHI) of a heavy chain.
- Dimers of a Fab’ according to the present disclosure create a F(ab’)2 where, for example, dimerization may be through the hinge.
- F(ab’) refers to a monovalent fragment of a single light chain homodimer, which is obtained by pepsin digestion of IgG, followed by reduction of the light chain disulfide bond.
- F(ab')2 refers to a fragment of IgG that is prepared by pepsin digestion of IgG.
- the F(ab’)2 fragment is a disulfide-linked homodimer of the two light chain dimers, so it retains bivalent epitope binding like whole IgG, but as it lacks the heavy chains, it is smaller in size compared to a whole IgG.
- F(ab’)2 and F(ab’) fragments do not bind to immunoglobulin receptors on cells, which can be useful for achieving specific staining of the primary antibody target.
- DiFab refers to two Fab molecules linked via their C-terminus of the heavy chains or two Fab’ molecules linked via one or more disulfide bonds in the hinge region thereof.
- an antibody refers to a single domain antibody (sdAb), with an antibody fragment consisting of a single monomeric variable antibody domain.
- antibody binding variant refers to a polypeptide, for example, an antibody possessing the desired characteristics described herein and comprising a VH and/or a VL that has at least about 80% amino acid sequence identity with a VH and/or a VL of the reference antibody.
- antibody variants include, for instance, antibodies wherein one or more amino acid residues are added to or deleted from the VH and/or a VL domain.
- an antibody variant will have at least about 80% amino acid sequence identity, alternatively at least about 85%, 90%, 95%, 96%, 97%, 98%, or 99% amino acid sequence identity, to an antibody described herein.
- variant antibodies will have no more than one conservative amino acid substitution as compared to an antibody sequence provided herein, alternatively no more than about any of 2, 3, 4, 5, 6, 7, 8, 9, or 10 conservative amino acid substitutions as compared to an antibody sequence provided herein.
- epitopes or “binding site” in the context of antibodies refers to a site (or a part) on an antigen to which the paratope of an antibody binds or recognizes.
- Epitopes can be formed both from contiguous amino acids (also often called “linear epitopes”) or noncontiguous amino acids formed by tertiary folding of a protein (often called “conformational epitopes”). Epitopes formed from contiguous amino acids are typically retained on exposure to denaturing solvents whereas epitopes formed by folding are typically lost on treatment with denaturing solvents.
- An epitope typically includes at least
- Epitopes usually consist of chemically active surface groups of molecules such as amino acids, sugar side chains and usually have specific 3D structural and charge characteristics.
- the "class" of an antibody refers to the type of constant domain or constant region possessed by its heavy chain.
- the heavy chain constant domains that correspond to the different classes of immunoglobulins are called a, d, e, g, and m, respectively.
- chimeric antibody is an antibody molecule (or antigen-binding fragment thereof) in which (a) the constant region, or a portion thereof, is altered, replaced or exchanged so that the antigen binding site (variable region) is linked to a constant region of a different or altered class, effector function and/or species, or an entirely different molecule which confers new properties to the chimeric antibody, e. g., an enzyme, toxin, hormone, growth factor, drug, etc.; or (b) the variable region, or a portion thereof, is altered, replaced or exchanged with a variable region having a different or altered antigen specificity.
- a mouse antibody can be modified by replacing its constant region with the constant region from a human immunoglobulin. Due to the replacement with a human constant region, the chimeric antibody can retain its specificity in recognizing the antigen while having reduced antigenicity in human as compared to the original mouse antibody.
- chimeric antigen receptors refers to receptor protein that has been engineered to give T cells the new ability to target a specific antigen.
- the receptors are chimeric in that they combine both antigen-binding and T cell activating functions into a single receptor.
- CAR T cell therapy uses T cells engineered with CARs to treat cancer.
- T cells in CAR T immunotherapy are modified to recognize cancer cells in order to more effectively target and destroy them.
- CAR T cells can be derived either from T cells in a patient's own blood (autologously) or from the T cells of another, healthy, donor (allogeneically). Once isolated from a person, these T cells are genetically engineered to express a specific CAR, which programs them to target an antigen that is present on the surface of tumors.
- CAR T cells are engineered to be specific to an antigen that is expressed on a tumor but is not expressed on healthy cells.
- CAR T cells destroy cells through extensive stimulated cell proliferation, increasing the degree to which they are toxic to other living cells (cytotoxicity) and by causing the increased secretion of factors that can affect other cells such as cytokines, interleukins and growth factors.
- the surface of CAR T cells can bear either two types of co-receptors, CD4 and CD8, each with different and interacting cytotoxic effects.
- human antibody or “humanized antibody” (or antigen-binding fragment thereof), as used herein, is intended to include antibodies (and antigen-binding fragments thereof) having variable regions in which both the framework and CDR regions are derived from sequences of human origin.
- antibodies or immunoglobulins are divided into the classes: IgA, IgD, IgE, IgG and IgM, and several of these may be further divided into subclasses (subtypes), e.g. lgG1 , lgG2, lgG3, and lgG4, lgA1 , and lgA2.
- human IgG constant region domains may be used, especially of the lgG1 and lgG3 isotypes when the antibody molecule is intended for therapeutic uses and antibody effector functions are required.
- lgG2 and lgG4 isotypes may be used when the antibody molecule is intended for therapeutic purposes and antibody effector functions are not required.
- the constant region also is derived from such human sequences.
- a humanized antibody (or antigen-binding fragment thereof) retains the reactivity of a non-human antibody while being less immunogenic in humans. This can be achieved, for instance, by retaining the non-human CDR regions and replacing the remaining parts of the antibody with their human counterparts (i.
- the humanized antibodies of the present disclosure may include amino acid residues not encoded by human sequences (e. g., mutations introduced by random or site-specific mutagenesis in vitro or by somatic mutation in vivo, or a conservative substitution to promote stability or manufacturing). This definition of a humanized antibody specifically excludes a humanized antibody comprising non-human antigen-binding residues.
- Human antibodies can be produced using various techniques known in the art, including phage-display libraries, administering the antigen to a transgenic animal that has been modified to produce such antibodies in response to antigenic challenge, but whose endogenous loci have been disabled, e. g., immunized xenomice via a human B-cell hybridoma technology.
- recombinant humanized antibody includes all human antibodies that are prepared, expressed, created or isolated by recombinant means, such as antibodies isolated from a host cell transformed to express the humanized antibody, e. g., from a transfectoma, and antibodies prepared, expressed, created or isolated by any other means that involve splicing of all or a portion of a human immunoglobulin gene, sequences to other DNA sequences.
- isolated means, throughout this specification, that the antibody, or polynucleotide, as the case may be, exists in a physical milieu distinct from that in which it may occur in nature.
- isolated nucleic acid refers to a nucleic acid molecule that has been isolated from its natural environment or that has been synthetically created.
- An isolated nucleic acid may comprise synthetic DNA, for instance produced by chemical processing, cDNA, genomic DNA or any combination thereof.
- An isolated antibody refers to an antibody that is substantially free of other cellular material and/or chemicals.
- CDRs Complementarity Determining Regions
- Kabat i.e., "Kabat” numbering scheme
- Al-Lazikani Chothia
- ImMunoGenTics IMGT numbering scheme
- CDRs Complementarity Determining Regions
- Antibodies typically comprise six CDRs: three in the VH (HI, H2, H3), and three in the VL (LI, L2, L3).
- sequence identity refers to the percentage sequence identities that are determined with antibody sequences maximally aligned by the Kabat numbering convention. After alignment, if a subject antibody region (e.g., the entire mature variable region of a heavy or light chain) is being compared with the same region of a reference antibody, the percentage sequence identity between the subject and reference antibody regions is the number of positions occupied by the same amino acid in both the subject and reference antibody region divided by the total number of aligned positions of the two regions, with gaps not counted, multiplied by 100 to convert to percentage.
- “Conservative substitutions” may be made, for instance, on the basis of similarity in polarity, charge, size, solubility, hydrophobicity, hydrophilicity, and/or the amphipathic nature of the amino acid residues involved.
- the 20 naturally occurring amino acids can be grouped into the following six standard amino acid groups: (1 ) hydrophobic: Met, Ala, Vai, Leu, lie; (2) neutral hydrophilic: Cys, Ser, Thr; Asn, Gin; (3) acidic: Asp, Glu; (4) basic: His, Lys, Arg; (5) residues that influence chain orientation: Gly, Pro; and (6) aromatic: Trp, Tyr, Phe.
- “conservative substitutions” are defined as exchanges of an amino acid by another amino acid listed within the same group of the six standard amino acid groups shown above. For example, the exchange of Asp by Glu retains one negative charge in the so modified polypeptide.
- glycine and proline may be substituted for one another based on their ability to disrupt a-helices.
- non-conservative substitutions are defined as exchanges of an amino acid by another amino acid listed in a different group of the six standard amino acid groups (1 ) to (6) shown above.
- affinity refers to the strength of all noncovalent interactions between an antibody thereof and the target protein.
- binding affinity refers to intrinsic binding affinity which reflects a 1 : 1 interaction between members of a binding pair (e.g., antibody and antigen).
- the affinity of a molecule for its binding partner can be generally represented by the dissociation constant (Ko). Affinity can be measured by common methods known in the art, including those described herein.
- KD refers to the constant of dissociation which is obtained from the ratio of K rf to K a (i.e. K rf / K a ) and is expressed as a molar concentration (M).
- Kd and K a refer to the dissociation rate and association rate, respectively, of a particular antigen-antibody interaction.
- K D values for antibodies can be determined using methods well established in the art.
- the term “low affinity” refers to KD of 100 nM or more.
- moderate affinity refers to KD ranging from 10nM to 100nM.
- high affinity refers to KD of 1 to 10nM.
- very high affinity refers to KD of 1 nM or less.
- EC50 refers to the concentration of an antibody or an antigen-binding protein/portion thereof, which induces a response, either in an in vivo or an in vitro assay, which is 50% of the maximal response (i.e., halfway between the maximal response and the baseline).
- multi-specific antibody refers to an antibody as described herein which has at least two binding domains, i.e. two or more binding domains, for example two or three binding domains, wherein the at least two binding domains independently bind two different antigens or too different epitopes on the same antigen.
- Multi-specific antibodies are generally monovalent for each specificity (antigen).
- Multi-specific antibodies described herein encompass monovalent and multivalent, e.g. bivalent, tri valent, tetravalent multi-specific antibodies.
- bispecific or “bispecific antibody” as employed herein refers to an antibody with two antigen specificities or an antibody that has the ability to simultaneously bind to two target antigens/sites.
- a “bispecific T cell engager” refers to a class of artificial bispecific monoclonal antibodies that direct a host’s immune system, such as the T cells’ cytotoxic activity against target cells (such as cancer cells).
- BiTEs are fusion proteins consisting of two single-chain variable fragments (scFvs) of different antibodies, or amino acid sequences from four different genes, on a single peptide chain of about 55 kDa.
- One of the scFvs binds to an immune cell (such as a T cell via the CD3 receptor), and the other to target of interest (e.g., a tumor cell via a tumor specific molecule).
- BiTEs form a link between an immune cell (e.g., a T cell) and a target cell (such as a tumor cell). This causes the immune cell (e.g., T cell) to exert cytotoxic activity on tumor cells. For example, if the immune cell is a T cell, the T cell would exert cytotoxic activity by producing proteins like perforin and granzymes that enter tumor cells and initiate the cell’s apoptosis.
- immune cell refers to a type of specialized cell that plays a crucial role in the body's defense against infections and foreign substances. They are a part of the immune system, which is responsible for identifying and eliminating harmful pathogens, such as bacteria, viruses, and parasites, as well as abnormal or cancerous cells.
- an ‘immune cell’ refers to any cell of the immune system, including but not limited to T-cells, helper T-cells, B-cells, natural killer (NK) cells, dendritic cells (DC), granulocytes (such as basophils, eosinophils, neutrophils), mast cells, monocytes, and macrophages.
- a “nanobody with a heavy chain only” refers to nanobody-based heavy chain antibody.
- a heavy-chain antibody is an antibody which consists of two heavy chains and lacks the two light chains usually found in antibodies.
- a "vector” is any molecule or composition that has the ability to carry a nucleic acid sequence into a suitable host cell where e.g., synthesis of the encoded polypeptide can take place.
- a vector is a nucleic acid that has been engineered, using recombinant DNA techniques that are known in the art, to incorporate a desired nucleic acid sequence (e.g., a nucleic acid of the present disclosure).
- Expression vectors typically contain one or more of the following components (if they are not already provided by the nucleic acid molecules): a promoter, one or more enhancer sequences, an origin of replication, a transcriptional termination sequence, a complete intron sequence containing a donor and acceptor splice site, a leader sequence for secretion, a ribosome binding site, a polyadenylation sequence, a polylinker region for inserting the nucleic acid encoding the polypeptide to be expressed, and a selectable marker element.
- Vectors are typically selected to be functional in the host cell in which the vector will be used (the vector is compatible with the host cell machinery such that amplification of the gene and/or expression of the gene can occur.
- the vector as described herein may be an expression vector and/or a cloning vector.
- host cell is intended to refer to a cell into which an expression vector has been introduced. It should be understood that such terms are intended to refer not only to the particular subject cell but to the progeny of such a cell. Because certain modifications may occur in succeeding generations due to either mutation or environmental influences, such progeny may not, in fact, be identical to the parent cell, but are still included within the scope of the term “host cell” as used herein.
- treating refers to both therapeutic treatment and prophylactic or preventative measures, wherein the object is to prevent or slow down (lessen) a medical condition, which includes but is not limited to diseases, symptoms and disorders.
- a medical condition also includes a body’s response to a disease or disorder, e.g. inflammation.
- Those in need of such treatment include those already with a medical condition as well as those prone to getting the medical condition or those in whom a medical condition is to be prevented.
- subject as used herein includes patients and non-patients.
- patient refers to individuals suffering or are likely to suffer from a medical condition
- non-patients refer to individuals not suffering and are likely to not suffer from the medical condition.
- Non-patients include healthy individuals, non-diseased individuals and/or an individual free from the medical condition.
- subject includes humans and animals. Animals may include, but is not limited to, mammals (for example nonhuman primates, canine, murine and the like), and the like.
- “Murine” refers to any mammal from the family Muridae and / or Leporidae, such as mouse, rat, rabbit, and the like.
- preventing and/or “reducing the severity of symptoms” as used herein refers to process of delaying the onset, reducing the severity of symptoms, reducing and/or preventing weight loss, preventing death, inhibiting deterioration, inhibiting further deterioration, and/or ameliorating at least one sign or symptom of a disease.
- the word “substantially” whenever used is understood to include, but not restricted to, “entirely” or “completely” and the like.
- terms such as “comprising”, “comprise”, and the like whenever used are intended to be non-restricting descriptive language in that they broadly include elements/components recited after such terms, in addition to other components not explicitly recited.
- reference to a “one” feature is also intended to be a reference to “at least one” of that feature.
- Terms such as “consisting”, “consist”, and the like may in the appropriate context, be considered as a subset of terms such as “comprising”, “comprise”, and the like.
- the individual numerical values within the range also include integers, fractions and decimals. Furthermore, whenever a range has been described, it is also intended that the range covers and teaches values of up to 2 additional decimal places or significant figures (where appropriate) from the shown numerical end points. For example, a description of a range of 1% to 5% is intended to have specifically disclosed the ranges 1 .00% to 5.00% and also 1 .0% to 5.0% and all their intermediate values (such as 1 .01%, 1 .02% ... 4.98%, 4.99%, 5.00% and 1.1%, 1 .2% ... 4.8%, 4.9%, 5.0% etc.,) spanning the ranges. The intention of the above specific disclosure is applicable to any depth/breadth of a range.
- At least 95% identical as employed herein is intended to refer to an amino acid sequence which over its full length is 95% identical or more to a reference sequence, such as 96, 97, 98 or 99% identical. Software programmes can be employed to calculate percentage identity.
- the disclosure may have disclosed a method and/or process as a particular sequence of steps. However, unless otherwise required, it will be appreciated that the method or process should not be limited to the particular sequence of steps disclosed. Other sequences of steps may be possible. The particular order of the steps disclosed herein should not be construed as undue limitations. Unless otherwise required, a method and/or process disclosed herein should not be limited to the steps being carried out in the order written. The sequence of steps may be varied and still remain within the scope of the disclosure.
- an antigen binding protein an antigen binding variant, and/or an antigen binding fragment thereof that binds specifically to Epithelial Cellular Adhesion Molecule (EpCAM).
- EpCAM Epithelial Cellular Adhesion Molecule
- the antigen binding protein, variant or fragment thereof is a monoclonal antibody.
- the antigen binding protein or variant thereof is a full length antibody.
- the antigen binding fragment thereof is selected from the group comprising: an Fab, a modified Fab, an Fab', a modified Fab', an F(ab')2, an Fv, a single domain antibody, a VHH, an scFv, an Fv, an bivalent antibody, a trivalent antibody, a tetra-valent antibody, a Bis-scFv, a diabody, a triabody, a tetrabody, an epitope-binding fragment, and the like.
- the antigen binding protein, variant or fragment thereof is an IgG, IgA, IgD, IgE, or IgM antibody.
- the antigen binding protein, variant or fragment thereof is a chimeric antibody, a human antibody / humanized antibody, recombinant humanized antibody, an animal-derived antibody (such as llama antibody) or the like.
- the antigen binding protein, variant or fragment thereof is a human antibody. In one embodiment, the antigen binding protein, variant or fragment thereof is a llama antibody. In one embodiment, the antigen binding protein, variant or fragment thereof is a humanized llama antibody.
- the antigen binding protein, variant or fragment thereof comprises one or more amino acid sequences selected from the group consisting of SEQ ID NOs: 1 to 37.
- the antigen binding protein, variant or fragment thereof is encoded by one or more nucleic acid sequences selected from the group consisting of SEQ ID NOs: 38 to 74.
- the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and a light chain variable region encoded by nucleic acid sequences selected from the group consisting of:
- a heavy chain variable region comprising: (1 B6 and 1 C1 ) a CDR-H1 comprising GGAGGCACCTTCAGCAGCTATGCT (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 39), and a CDR-H3 comprising GCGAGATCGTTGGGTGGGAGATTTCGCTAC (SEQ ID NO: 40); and a light chain variable region comprising: a CDR-L1 comprising
- CAGAGCCTGCTGCATAGTAATGGATACAACTAT (SEQ ID NO: 46)
- CDR-L2 comprising TTGGGTTCT
- CDR-L3 comprising ATGCAAGCTCTACAAACTCCGTACACT (SEQ ID NO: 48)
- a heavy chain variable region comprising: (1 C11 ) a CDR-H1 comprising GGAGGCACCTTCAGCAGCTATGCT (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 39), and a CDR-H3 comprising GCGAGATCGTTGGGTGGGAGATTTCGCTAC (SEQ ID NO: 40); and a light chain variable region comprising: a CDR-L1 comprising
- CAGAGCCTCCTGCATAGTAATGGATACAACTAT (SEQ ID NO: 46)
- CDR-L2 comprising TTGGGTTCT
- CDR-L3 comprising ATGCAAGGTCTACAAAGTCCCTGGACG (SEQ ID NO: 52)
- a heavy chain variable region comprising: (1 D4) a CDR-H1 comprising GGAGGCACCTTCAGCAGCTATGCT (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 38), a CDR-H2 comprising
- CAGAGCCTCCTGCATAGTAATAGATACAACTAT (SEQ ID NO: 54), a CDR-L2 comprising TTGGGTTCT (SEQ ID NO: 47), and a CDR-L3 comprising ATGCAAGCTCTACAAACTCGGTACACT (SEQ ID NO: 54), and a CDR-L3 comprising ATGCAAGCTCTACAAACTCGGTACACT (SEQ ID NO: 54).
- a heavy chain variable region comprising: (1 H6) a CDR-H1 comprising GGAGGCACCTTCAGCAGCTATGCT (SEQ ID NO:
- CAGAGCCTCCTGCATAGTAATGGATACAACTAT (SEQ ID NO: 46)
- CDR-L2 comprising TTGGGTTCT
- CDR-L3 comprising ATGCAAGGTCTACAGACTCCGTACACT
- a heavy chain variable region comprising: (1 E4) a CDR-H1 comprising GGGGACAGTATCTCTAGTAACAGTGTTGCT
- a light chain variable region comprising: (1 E4) a CDR-L1 comprising CAGAGTATTAGCGACTTT (SEQ ID NO: 56), a CDR-L2 comprising GCTGCATCG (SEQ ID NO: 57), and a CDR-L3 comprising TTACATTATGCCCGACACT (SEQ ID NO: 58) or fragment or variation or sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
- the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and a light chain variable region encoded by nucleic acid sequences selected from the group consisting of:
- a heavy chain variable region comprising: (1 A5-VHH, 2C4-VHH, 2D10-VHH and hu2C4-VHH) a CDR-H1 comprising GGAAGCATCTTCAGTGGCAATGAC (SEQ ID NO:
- a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO:
- a heavy chain variable region comprising: (1 B8-VHH) a CDR-H1 comprising GGAAGCTCCGAAAGATTCACATCA (SEQ ID NO:
- a CDR-H2 comprising ATTACTAATGGTGGTAGCACA (SEQ ID NO: 66), a CDR-H2 comprising ATTACTAATGGTGGTAGCACA (SEQ ID NO: 66), a CDR-H2 comprising ATTACTAATGGTGGTAGCACA (SEQ ID NO: 66), a CDR-H2 comprising ATTACTAATGGTGGTAGCACA (SEQ ID NO: 66), a CDR-H2 comprising ATTACTAATGGTGGTAGCACA (SEQ ID NO:
- a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO:
- ID NO: 70 or fragment or variation or sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
- the antigen binding protein, variant or fragment thereof comprises a heavy chain variable domain encoded by the nucleotide sequence comprising
- the antigen binding protein, variant or fragment thereof comprises a light chain variable domain encoded by the nucleotide sequence comprising
- AGGCTGAGGATGCTGGGGTTTATTACTGCATGCAAGGTCTACAGACTCCG TACACTTTTGGCCAGGGGACCAAG (SEQ ID NO: 61 - clone 1 H6), or a sequence at least 60% identical thereto and/or having 10-20 nucleic acid substitutions.
- the antigen binding protein, variant or fragment thereof comprises a single domain heavy chain variable domain encoded by the nucleotide sequence comprising:
- the antigen binding protein, variant or fragment thereof comprises a light chain constant domain encoded by the nucleotide sequence comprising
- the antigen binding protein is an antibody. In some embodiments, the antigen binding protein may include an isolated antibody.
- the antigen binding protein comprises a sequence that is at least 60% identical to any one of the sequences disclosed herein.
- the antigen binding protein may comprise a sequence that is at least about 60%, at least about 61 %, at least about 62%, at least about 63%, at least about 64%, at least about 65%, at least about 66%, at least about 67%, at least about 68%, at least about 69%, at least about 70%, at least about 71 %, at least about 72%, at least about 73%, at least about 74%, at least about 75%, at least about 76%, at least about 77%, at least about 78%, at least about 79%, at least about 80%, at least about 81%, at least about 82%, at least about 83%, at least about 84%, at least about 85%, at least about 86%, at least about 87%, at least about 88%, at least about 89%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 9
- the antigen binding protein comprises a sequence or an amino acid region or is encoded by a nucleotide region that differs by about one, about two, about three, about four, about five, about six, about seven, about eight, about nine, about ten or more amino acids or nucleobase with the sequence as disclosed herein.
- the antigen binding protein comprises an amino acid sequence having one or more amino acid mutations with respect to any one of the sequences disclosed herein. In some examples, the antigen binding protein comprises an amino acid sequence having one, or two, or three, or four, or five, or six, or seen, or eight, or nine, or ten, or fifteen, or twenty amino acid mutations with respect to any one of the sequences disclosed herein. In some examples, the one or more amino acid mutations may be independently selected from substitutions, insertions, deletions, and truncations.
- the amino acid mutations are amino acid substitutions, and may include conservative and/or non-conservative substitutions.
- the substitution replaces the amino acids with natural amino acids, such as, but is not limited to, alanine, arginine, asparagine, aspartate, cysteine, glutamine, glutamate, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine.
- the substitution does not include replacement with cysteine.
- the substitution replaces the amino acids with natural amino acids, such as, but is not limited to, alanine, arginine, asparagine, aspartate, glutamine, glutamate, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine.
- natural amino acids such as, but is not limited to, alanine, arginine, asparagine, aspartate, glutamine, glutamate, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine.
- the substitution may be a conservative substitution that substitute one for another of similar properties. For example, substitution of one amino acid with another from the same group. In various embodiments, the substitution may include substitution with an amino acid with different properties. In various embodiments, the substitution is made without affecting the biological activity of the antigen binding protein, variant or fragment thereof as described herein. In various embodiments, the substitution increases binding affinity to EpCAM.
- the substitutions may also include non-classical amino acids.
- non-classical amino acids include, but are not limited to, selenocysteine, pyrrolysine, N-formylmethionine p-alanine, GABA and 5-Aminolevulinic acid, 4-aminobenzoic acid (PABA), D-isomers of the common amino acids, 2,4- diaminobutyric acid, a-amino isobutyric acid, 4-aminobutyric acid, Abu, 2-amino butyric acid, y-Abu, s-Ahx, 6-amino hexanoic acid, Aib, 2-amino isobutyric acid, 3-amino propionic acid, ornithine, norleucine, norvaline, hydroxyproline, sarcosme, citrulline, homocitrulline, cysteic acid, t-butylglycine, t-butylalan
- the amino acid mutation may be in the CDRs of the antigen binding protein (e.g., the CDR1 , CDR2 or CDR3 regions).
- amino acid alteration may be in the framework regions (FRs) of the antigen binding protein (e.g., the FR1 , FR2, FR3, or FR4 regions).
- Modification of the amino acid sequences may be achieved using any known technique in the art e.g., site-directed mutagenesis or PCR based mutagenesis.
- the mutations do not substantially reduce the antigen binding protein’s capability to specifically bind to a target. In some examples, the mutations do not substantially reduce the antigen binding protein’s capability to specifically bind to a target and without functionally modulating (e.g., partially or fully neutralizing) the target.
- the antigen binding protein, variant or fragment thereof binds to EpCAM with low affinity, moderate affinity or high affinity.
- the antigen binding protein, variant or fragment thereof binds to EpCAM with low to moderate affinity (KD ranging from 1 -100nM).
- the antigen binding protein, variant or fragment thereof binds with moderate affinity KD ranging from 10-100nM.
- the antigen binding protein, variant or fragment thereof binds to EpCAM with low affinity.
- the binding affinity of the antigen binding protein of the disclosure for the full-length and/or mature forms and/or isoforms and/or splice variants and/or fragments and/or monomeric and/or dimeric forms and/or any other naturally occurring or synthetic analogs, variants, or mutants (including monomeric and/or dimer forms) of antigen binding protein may be described by the equilibrium dissociation constant (K D ).
- the antigen binding protein binds to the full-length and/or mature forms and/or isoforms and/or splice variants and/or fragments and/or any other naturally occurring or synthetic analogs, variants, or mutants (including monomeric and/or dimeric forms) of antigen binding protein with a K D of less than about 1
- binding affinities of the presently disclosed antigen binding proteins/fragments thereof were measured via Bio-layer Interferometry (BLI) analysis (results shown in Example 4).
- BLI Bio-layer Interferometry
- the antigen binding protein may be a nanobody.
- the bispecific T cell engager (BiTE) is a nanobody with a heavy chain only (VHH).
- the second antigen targeted by the bispecific T cell engager is selected from the group comprising CD3, NKG2D, CD28, CD16, and the like.
- the CD3 may include CD3 , CD3s, CD3y, CD36, and the like.
- 1 C1 , 1 C11 , 1 D4 and 1 H6) were able to kill 70-100% of HT-29 cells within 72 hours at a concentration as low as 0.1 nM (FIG. 4B).
- 1 C1 and 1 H6 BiTE antibodies showed the lowest EC50 values of 18.5 pM and 12.02 pM, respectively; while 1 B6, 1C1 1 , 1 D4, 1 E4 showed low to moderate cell killing efficacy (FIG. 4C).
- the five disclosed llama anti-EpCAM BiTE clones (1A5-VHH, 1 B8-VHH, 2B7-VHH, 2C4-VHH and 2D10- VHH) show comparable or even lower EC50 values as the benchmark known in the art anti-EpCAM BiTE “MT110” in binding to both mobilized biotinylated EpCAM antigen (FIG. 6B) and EpCAM expressing cells (FIG. 6F), suggesting high binding affinities to the antigen.
- the four clones (1A5-VHH, 2B7-VHH, 2C4-VHH and 2D10-VHH) all bound strongly to EpCAM expressing cell HT-29 as well as human T cells (CD3 positive) (FIG. 6E).
- the binding EC50 to HT-29 cells range from 10-20 pM and binding specificity was superior as none of them showed binding to EpCAM negative, CD negative HeyA8 cells even at the highest concentration of 10nM (FIG. 6D).
- the four anti-EpCAM VHH BiTE antibodies (1A5-VHH, 2B7-VHH, 2C4-VHH and 2D10-VHH) were able to kill 90-100% of EpCAM positive HT-29 (FIG. 7A), HepG2 (FIG. 7B), and Hep3B (FIG. 7C) within 96 hours at concentrations as low as 10 pM but spared EpCAM negative cell HeyA8.
- the antigen binding fragments of VHH antibodies are advantageously much smaller and have a higher tissue penetration than conventional antibodies, and possess superior properties including high solubility, stability and resistance to heat-denaturation.
- the immunoglobulin fragment is an IgG Fc fragment.
- the sequence encoding the immune cell engager encodes for a multi-specific antigen binding protein.
- the multi-specific antigen binding protein is a bi-specific antibody.
- the sequence encoding the immune cell engager encodes for an antigen binding protein capable of binding EpCAM (anti-EpCAM antigen binding protein), or fragment, or variant thereof, and an anti- immune cell antigen binding protein.
- the sequence encoding the immune cell engager encodes for a single chain variable fragment (scFv) or a single variable domain located on a heavy chain (VHH).
- the sequence encoding the immune cell engager encodes for an anti-EpCAM scFv or an anti-EpCAM VHH.
- the sequence encoding the immune cell engager encodes for an anti-immune cell antigen binding protein that binds to an immune cell activation marker.
- the immune cell activation marker may include but is not limited to CD3, NKG2D, CD4, CD8, CD16, CD64, and the like.
- the immune activation marker may be in VHH form or scFv form.
- the sequence encoding the immune cell engager encodes for an antigen binding protein capable of binding CD3 (anti-CD3 antigen binding protein), or fragment, or variant thereof.
- the sequence encoding the immune cell engager encodes for a single chain variable fragment (scFv) or a VHH form.
- the sequence encoding the immune cell engager encodes for an anti-CD3 scFv or an anti-CD3 single domain VHH.
- the immune cell engager may include a His-tag.
- the immune cell engager comprises an anti-EpCAM antigen binding protein, a linker, an anti-CD3 scFv or an anti-CD3 single domain VHH, and a His- tag.
- the linker is a cleavable linker, which may include but is not limited to, P2A, T2A, F2A, and the like.
- the polynucleotide comprises the sequence encoding an immune cell engager is a sequence encoding a bispecific T cell engager (BiTE). In some examples, the polynucleotide comprises the sequence encoding BiTE that bi-specifically binds to EpCAM and a T cell. In some examples, the polynucleotide comprises the sequence encoding for an anti-GPC3 scFv CAR with CD3 intracellular domain, and the sequence encoding for a BiTE that binds to EpCAM and a T cell.
- the polynucleotide comprises one or more nucleic acid sequences selected from the group consisting of SEQ ID NOs: 38 to 74.
- the polynucleotide sequence may be at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical to the sequences as disclosed herein.
- the vector is an expression vector.
- the vector is selected from the group consisting of a plasmid, a viral particle, a phage, a baculovirus, a yeast plasmid, a lipid based vehicle, a polymer microsphere, a liposome, and a cell based vehicle, a colloidal gold particle, lipopolysaccharide, polypeptide, polysaccharide, a viral vehicle, an adenovirus, a retrovirus, a lentivirus, an adeno-associated viruses, a herpesvirus, a vaccinia virus, a foamy virus, a cytomegalovirus, a Semliki forest virus, a poxvirus, a pseudorabies virus, an RNA virus vector, a DNA virus vector and a vector derived from a combination of a plasmid and a phage DNA, further optionally wherein said polynucleotide is operatively linked to an expression control sequence(s) to direct peptid
- the vector is a lentiviral vector.
- the host cell comprises cloning or expression vectors as described above and/or nucleic acid sequences encoding for the antigen binding protein, antibodies and binding fragments thereof as described above.
- the host cells may be prokaryotic host cells (such as E. coli) or eukaryotic host cells (such as a yeast cell, an insect cell, or a vertebrate cell).
- the host cell when cultured under appropriate conditions, expresses an antibody or binding fragment thereof which can subsequently be collected from the culture medium (if the host cell secretes it into the medium) or directly from the host cell producing it (if it is not secreted). Selection of an appropriate host cell will depend upon various factors, such as desired expression levels, polypeptide modifications that are desirable or necessary for activity, such as glycosylation or phosphorylation, and ease of folding into a biologically active molecule.
- the host cell may comprise a bacterial cell, a yeast cell, an animal cell e.g., a mammalian cell and/or a plant cell.
- Suitable mammalian host cells include CHO, myeloma or hybridoma cells. Many are available from the American Type Culture Collection (ATCC), Manassas, Va. Examples include mammalian cells, such as Chinese hamster ovary cells (CHO) (ATCC No. CCL61 ), human embryonic kidney (HEK) 293 or 293T cells (ATCC No. CRL1573), 3T3 cells (ATCC No. CCL92), or PER.C6 cells. Other cell types of use in expressing antibodies include lymphocytic cell lines, e.g., NSO myeloma cells and SP2 cells, COS cells.
- lymphocytic cell lines e.g., NSO myeloma cells and SP2 cells, COS cells.
- the host cell expresses/secretes the antigen binding protein, variant or fragment thereof as disclosed herein.
- a cell that expresses/secretes an immune cell engager that is specific to EpCAM.
- the cell is a stem cell, for example selected from the group comprising a mesenchymal stem cell, neural stem cell and a pluripotent stem cell, such as an induced pluripotent stem cell (IPSC).
- a mesenchymal stem cell a mesenchymal stem cell.
- the stem cell is a neural stem cell.
- the stem cell is a pluripotent stem cell, such as an iPSC.
- the cell is an immune cell.
- the immune cell expresses/secretes an immune cell engager which is specific to EpCAM.
- the immune cell engager is selected from the group comprising a T cell engager, an NK cell engager, a monocyte engager and a macrophage engager.
- the immune cell expresses/secretes a bispecific T cell engager (BITE) which is specific to EpCAM.
- BITE bispecific T cell engager
- the immune cell expresses/secretes a bispecific T cell engager (BiTE), such as an inducible, non-inducible or constitutive expression BiTE comprising the antigen binding protein, variant or fragment thereof as disclosed herein.
- BiTE bispecific T cell engager
- the present inventors have established that immune cells, such as CAR T-cells, are able to secrete EpCAM BiTEs. See Examples 5 to 7. It was not previously known that this was possible.
- immune cells such as CAR T-cells
- this allows the EpCAM immune engagers to be secreted at the target site (for example at the site of a solid tumour), thereby minimising toxicity and/or side effects.
- the immune cell may include but is not limited to a macrophage, a dendritic cell, a T cell, a B cell, an eosinophil, a basophil, a neutrophil, a mast cell, a natural killer T cell (NKT cell), natural killer cell (NK cell), a macrophage, a monocyte, and the like.
- the immune cell is a NK cell.
- the immune cell is a macrophage.
- the immune cell is a dendritic cell.
- the immune cell is a monocyte.
- the immune cell is a T-cell.
- the immune cell is a CAR T-cell, such as an anti-GPC3, anti-HER2 or anti-CD19 CAR T-cell.
- the CAR T-cell is an anti-GPC3 CAR T-cell.
- the CAR T-cell is an anti-HER2 CAR T-cell.
- the CAR T-cell is an anti- CD19 CAR T-cell.
- the immune cell is a CAR T-, CAR NK-, CAR macrophage-, or CAR monocyte-cell,
- the immune cell may bind to more than one host cell antigen. Therefore, in some examples, the immune cell may further bind to one host cell antigen, two host cell antigens, three host cell antigens, four host cell antigens, and the like.
- the anti-EpCAM BiTEs exert their cytotoxicity by recruiting the immune cells (such as T cells) nearby.
- immune cells such as T cells
- bystander T cells are physically directed to the close proximity of tumors and at the same time being activated and help the clearance of tumor cells.
- CAR T cells By applying local secretion of anti-EpCAM BiTE by CAR T cells, it converts a non-druggable target into a druggable target as it diminishes the on-target, off-tumor toxicity that might be brought by systematic delivery.
- EpCAM is also defined as a cancer stem cell marker expressed on cancer progenitor cells and cancer stem cells
- secretion of anti-EpCAM BiTE by CAR T cells will concomitantly contribute to the prevention of cancer relapse and recurrence by eliminating cancer stem cells and progenitor cells.
- the immune cell expresses an inducible bispecific T cell engager (BITE) comprising a heavy chain variable region that comprises the heavy chain complementarity determining region:
- BITE bispecific T cell engager
- the immune cell expresses an inducible bispecific T cell engager (BiTE) that further binds to an immune cell activator.
- BiTE bispecific T cell engager
- the immune cell expresses an inducible bispecific T cell engager (BiTE) that further binds to CD3.
- BiTE bispecific T cell engager
- polypeptide comprising a multispecific antigen binding protein.
- the multispecific antigen binding protein is a bi-specific antibody.
- the polypeptide comprises a multispecific antigen binding protein that binds to EpCAM (epithelial cell adhesion molecule) and an immune cell.
- the multispecific antigen binding protein is a bispecific immune cell engager that is capable of engaging both an antigen and an immune cell.
- the polypeptide comprises an anti-EpCAM antigen binding protein. In some examples, the polypeptide comprises a single domain anti-EpCAM antibody, optionally an anti-EpCAM H-chain antibody variable region (i.e., VHH).
- VHH anti-EpCAM H-chain antibody variable region
- the polypeptide comprises an anti-immune cell antigen binding protein. In some examples, the polypeptide comprises an anti-immune cell antigen binding protein that binds to an immune cell activation marker. In some examples, the immune cell activation marker is CD3, NKG2D, CD4, CD8, CD16, CD64, and the like. In some examples, the polypeptide binds to CD3. In some examples, the CD3 may include CD3 , CD3E, CD3y, CD36, and the like.
- the polypeptide comprises an anti-CD3 antigen binding protein. In some examples, the polypeptide comprises a single-chain variable fragment of an anti-CD3 antibody (anti-CD3 scFv).
- the polypeptide is a bispecific antibody/antigen binding protein.
- the bispecific antibody/antigen binding protein is a bispecific T cell engager (BITE).
- the bispecific T cell engager (BiTE) binds to two antigens, wherein the first antigen is EpCAM and wherein the second antigen is an immune cell marker.
- the second antigen is an immune cell marker that is involved in the activation of the immune cell.
- the second antigen targeted by the bispecific T cell engager (BiTE) may include but is not limited to CD3, NKG2D, CD28, CD16, CD64, and the like.
- the polypeptide comprises a BiTE that bi-specifically binds to EpCAM and a T cell. In some examples, the polypeptide comprises a BiTE that bi-specifically binds to EpCAM and CD3. In some examples, the EpCAM targeted by the BiTE is modified with an anti-EpCAM VHH paired with an anti-CD3 scFv.
- the anti-EpCAM VHH pairs with an anti-CD3 scFv that may include a clone Okt3 (NbO1 -O13A), or an anti-CD3 clone used by another anti-EpCAM in the art (MT110)(Nb01-013B).
- an anti-CD3 scFv that may include a clone Okt3 (NbO1 -O13A), or an anti-CD3 clone used by another anti-EpCAM in the art (MT110)(Nb01-013B).
- 21 clones showing the positive Fab supernatant binding signals to biotinylated hEpCAM-His protein and specific binding to EpCAM positive HT-29 cells were sequence and 6 unique sequences were identified: 1 B6, 1C1 , 1 C11 , 1 D4, 1 E4 and 1 H6.
- Clones 1 B6, 1 C1 , 1C11 , 1 D4 and 1 H6 share the same sequence in the heavy chain variable region but differ in the light chain sequences of the variable region, except for 1 B6 and 1 C1 that share the same sequences in the light chain variable region but with three amino acid differences in the kappa light chain constant region.
- the disclosed anti-EpCAM human Fab I VHH clones are used to construct anti-EpCAM BiTE antibodies.
- a method of producing / generating the antigen binding protein, variant or fragment thereof as disclosed herein comprising expressing the polynucleotide as described herein in a host cell.
- CDRs are in bold (CDR1 ) ;in bold and in italics (CDR2). or in bold, in italics and underlined (CDR3 ⁇ . Highlighted residues/bases show differences between the 1 B6 and 1 C1 light chain constant domains.
- Figure 1 shows the flow cytometry analysis of the surface expression of human EpCAM protein on multiple cells lines with epithelial morphology (HT-29, AGS, HepG2, Hep3B, MCF-7) and non-epithelial morphology (HeyA8, A172, U-87) and human T cells isolated from healthy donor blood tissue.
- epithelial morphology HT-29, AGS, HepG2, Hep3B, MCF-7
- HeyA8, A172, U-87 human T cells isolated from healthy donor blood tissue.
- a commercially available mouse anti-human EpCAM monoclonal antibody directly conjugated to BV421 fluorescent dye was used.
- Figure 2A shows the binding ELISA assay results of 6 Fab clones to the antigen protein.
- the 6 Fab clones were tested using crude culture supernatants in a binding ELISA assay to assess antigen binding to biotinylated human EpCAM with a poly-His tag, detected by goat-anti-human Fab-HRP.
- Figure 2B shows the flow cytometry analysis of the 6 Fab clones in their binding to cell surface expressed EpCAM. Using crude culture supernatants, the 6 Fab clones were tested on their binding to EpCAM positive cell HT-29 and EpCAM negative human T cells. In both assays, supernatant from a culture medium alone well (“Blank”) was used as background control.
- Figure 2C shows the binding affinity results of the lgG1 antibodies.
- Six anti- EpCAM Fab clones were cloned and expressed as lgG1 antibodies and their binding affinity to the biotinylated human EpCAM protein antigen were tested using affinity binding ELISA and compared to the benchmark IgG (the anti-EpCAM arm of “MT110”).
- Antigen binding EC50 values of anti-EpCAM IgG 1 antibodies were calculated by PRISM.
- Figure 3A shows the structural format of anti-EpCAM BiTE antibodies.
- Figure 3B shows the binding kinetics of anti-EpCAM BiTE antibodies for biotinylated human EpCAM protein antigen using binding ELISA.
- Figure 3C shows the results of the flow cytometry analysis at different concentrations for the anti-EpCAM BiTE antibodies to EpCAM positive HT-29 cells
- Figure 3D shows the results of the flow cytometry analysis at different concentrations for the anti-EpCAM BiTE antibodies to EpCAM negative HeyA8 cells
- Figure 3E shows the results of the flow cytometry analysis at different concentrations for the anti-
- EpCAM BiTE antibodies to CD3 positive human T cells The percentages of cells positively stained by anti-EpCAM BiTE antibodies are plotted.
- Figure 3F shows the binding of Benchmark BiTE antibody (“MT1 10”) to HT-29 and HeyA8 cells.
- Figure 3G shows the binding EC50 values of anti-EpCAM BiTE antibodies to HT- 29 cells as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively.
- Figure 4A shows the xCelligence impedance assay results for the anti-EpCAM BiTE antibodies. Cytolysis of EpCAM positive HT-29 cells was mediated by activated human T cells with time-course measurement using xCelligence impedance assay, upon treatment with 6 different anti-EpCAM BiTE antibodies (clones 1 B6, 1C1 , 1C11 , 1 D4, 1 E4 and 1 H6).
- Figure 4B shows the Mean % cytolysis ⁇ SD in duplicate wells at different concentrations at 72 hours.
- Figure 4C shows the EC50 values of anti-EpCAM BiTE antibodies in killing of HT-29 cells as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively.
- Figure 5A shows the binding ELISA results of 5 llama VHH clones to the antigen protein.
- the 5 llama VHH clones were tested using crude culture supernatants in a binding ELISA assay to assess their antigen binding to biotinylated human EpCAM with a poly-His tag, and detected by HRP-conjugated anti-HA.1 1 epitope tag antibody.
- Figure 5B shows the flow cytometry analysis of the 5 llama VHH clones in their binding to cell surface expressed EpCAM. Using crude culture supernatants, the 5 VHH clones were tested for binding to EpCAM positive cell AGS. In both assays, supernatant from a culture medium alone well (“Blank”) was used as background control.
- Figure 6A shows the structural format of anti-EpCAM VHH BiTE antibodies.
- Figure 6B binding kinetics of anti-EpCAM VHH BiTE antibodies for biotinylated human EpCAM protein antigen using binding ELISA.
- Figure 6C shows the results of the flow cytometry analysis at different concentrations for the anti-EpCAM VHH BiTE antibodies to EpCAM positive HT-29 cells
- Figure 6D shows the results of the flow cytometry analysis at different concentrations for the anti-EpCAM VHH BiTE antibodies to EpCAM negative HeyA8 cells
- Figure 6E shows the results of the flow cytometry analysis at different concentrations for the anti-EpCAM VHH BiTE antibodies to CD3 positive human T cells.
- the percentages of cells positively stained by anti-EpCAM VHH BiTE antibodies were plotted using PRISM software.
- Figure 6F shows the binding EC50 values of anti-EpCAM VHH BiTE antibodies to HT-29 cells as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively. All anti-EpCAM VHH BiTE antibodies used the same anti-CD3 clone as used in the benchmark antibody (“MT 110”).
- FIG. 7A shows the cytolysis of EpCAM positive HT-29 cells
- Figure 7B shows the cytolysis of EpCAM positive HepG2 cells
- Figure 7C shows the cytolysis of EpCAM positive Hep3B cells
- Figure 7D shows the cytolysis of EpCAM negative HeyA8 cells.
- Cytolysis of the cells was mediated by activated human T cells with time-course measurement using xCelligence impedance assay, upon treatment with 5 different anti- EpCAM VHH BiTE antibodies (clones 1 A5-VHH, 1 B8-VHH, 2B7-VHH, 2C4-VHH, and 2D10-VHH) with the E:T ratio of 4:1.
- Data was presented as % cytolysis at different concentrations at either 96 hours ( Figures 7A -C) or 72 hours ( Figure 7D).
- Figure 7E shows the EC50 values of anti-EpCAM VHH BiTE antibodies in killing of different cells at either 96 hours (96h) or 72 hours (72h) calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively. All anti-EpCAM VHH BiTE antibodies used the same anti-CD3 clone as used in the benchmark antibody (“MT 110”).
- Figure 8A shows the binding kinetics of llama derived anti-EpCAM bi-specific T- cell engagers using 2C4-VHH and its humanized clone hu2C4-VHH paired with anti-CD3 clone Okt3.
- Anti-EpCAM 2C4-VHH/Okt3, hu2C4-VHH/Okt3 BiTE antibodies were tested for their binding to biotinylated human EpCAM protein antigen using binding ELISA and the antigen binding EC50 values were tabulated.
- Figure 8B shows the binding of the anti-EpCAM 2C4-VHH/Okt3, hu2C4- VHH/Okt3 BiTE antibodies tested by flow cytometry analysis at different concentrations to EpCAM positive HT-29 cells
- Figure 8C shows the binding of the anti-EpCAM 2C4- VHH/Okt3, hu2C4-VHH/Okt3 BiTE antibodies to EpCAM negative, CDS negative HeyA8 cells
- Figure 8D shows the binding of the anti-EpCAM 2C4-VHH/Okt3, hu2C4- VHH/Okt3 BiTE antibodies to CD3 positive human T cells. The percentage of cells positively stained by anti-EpCAM BiTE antibodies were plotted.
- Figure 8E shows the binding EC50 values of anti-EpCAM 2C4-VHH/Okt3 and hu2C4-VHH/Okt3 BiTE antibodies to HT-29 cells as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively.
- Figure 9A shows the T cell mediated cytotoxicity of EpCAM positive cells by anti- EpCAM bi-specific T-cell engagers using 2C4-VHH and its humanized clone hu2C4-VHH paired with anti-CD3 clone Okt3
- Figure 9B shows the T cell mediated cytotoxicity of EpCAM negative cells by anti-EpCAM bi-specific T-cell engagers using 2C4-VHH and its humanized clone hu2C4-VHH paired with anti-CD3 clone Okt3.
- Figure 9C shows the EC50 values of the benchmark BiTE, 2C4-VHH/Okt3 and hu2C4-VHH/Okt3 BiTE antibodies in killing MCF-7 cells at 48 hours as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively.
- Figure 9D shows the ELISA measurement of interferon-y secretion from human T cells activated by different anti-EpCAM BiTE antibodies after 48 hours of co-culture with either EpCAM positive MCF-7 cells or EpCAM negative HeyA8 cells
- Figure 9E shows the ELISA measurement of IL-2 secretion from human T cells activated by different anti-EpCAM BiTE antibodies after 48 hours of co-culture with either EpCAM positive MCF-7 cells or EpCAM negative HeyA8 cells.
- Figure 10A shows structural formats of anti-GPC3 CAR T (5C4) or GE CAR- BiTE T cells (anti-GPC3 CAR T secreting anti-EpCAM BiTE, “MT110”, “NbO1 -O13A” or “Nb01 -013B” was used as BiTE) or 19E CAR-BiTE T cells (anti-CD19 CAR T secreting anti-EpCAM BiTE, “Nb01-013A” or “Nb01 -013B” was used as BiTE).
- Figure 10B shows the results of an in vitro assay of Hep3B (GPC3 High , EpCAM High ) cells by anti-GPC3 CAR T, GE CAR-BiTE T cells or 19E CAR-BiTE T cells.
- Figure 10C shows the results of an in vitro assay of HT-29 (GPC3 Low , EpCAM High ) cells by anti-GPC3 CAR T, GE CAR-BiTE T cells or 19E CAR-BiTE T cells.
- Figure 10D shows the shows the results of an in vitro assay of HeyA8 (GPC3 ve , EpCAM ue ) cells by anti- GPC3 CAR T, GE CAR-BiTE T cells or 19E CAR-BiTE T cells.
- Figure 11 A shows the structure map of HE CAR-BITE T (clone 4D5 or F5) using anti-EpCAM VHH BITE (Nb01-013A).
- FIG 11 B shows the FACS analysis results of tumor markers (HER2 and EpCAM) expressed on AGS and MDA-MB468 cells.
- Figure 11C shows the percentage of CAR expression on anti-HER2 CAR T (4D5 or F5) and HE CAR- BITE T (4D5 or F5) cells detected by flow cytometry analysis.
- Figure 11 F shows the ELISA measurement of Interferon-r and IL-2 measured using culture supernatant collected at 36 hours post co-culture effector CAR T cells with AGS cells.
- Figure 11G shows the ELISA measurement of Interferon-r and IL-2 measured using culture supernatant collected at 36 hours post co-culture effector CAR T cells with MDA-MB468 cells.
- Figure 12 shows a graph demonstrating that the anti-EpCAM BITE secreted from GE CAR-BITE T cells can mediate strong T cell killing of cancer cells.
- Figure 13 shows a graph demonstrating the detection of anti-EpCAM BITE molecule Nb01 -013A secreted from GE CAR-BITE T cells by ELISA.
- Anti-GPC3 CAR T (5C4) cells or anti-GPC3 CAR T cells secreting anti-EpCAM BITE (Nb01 -013A) (named as “GE CAR-BITE T (Nb01 -013A)”) were cultured in T cell growth medium containing IL- 7 (20 ng/ml) and IL-15 (5 ng/ml). The starting cell density was 0.5 million per ml and the percentages of CAR expression in both cultures were around 60%.
- Cell culture supernatants were collected daily (24h, 48h, 72h, 96h) for an ELISA to detect the amount of secreted anti-EpCAM BITE molecule NbO1-O13A.
- human EpCAM-Fc tag protein was used to coat the ELISA plate overnight, after blocking with Casein for 2 hours, the culture supernatants containing the anti-EpCAM BiTE molecule NbO1 -O13A were added to the plate. After 1 -hour incubation, the plate was washed and the bound BiTE molecules were detected by an HRP conjugated secondary antibody against the His-tag.
- Figure 14 shows a graph demonstrating the detection of anti-EpCAM BiTE molecule Nb01 -013A secreted from HE CAR-BITE T cells by ELISA.
- Anti-HER2 CAR T (4D5 or F5) cells or anti-HER2 CAR T cells secreting anti-EpCAM BiTE (Nb01 -013A) (named as “HE CAR-BiTE T (4D5 or F5)”) were cultured in T cell growth medium containing IL-7 (20 ng/ml) and IL-15 (5 ng/ml). The starting cell density was 1.5 million per ml and the percentages of CAR expression ranged from 36.8% to 57.2%.
- Cell culture supernatants were collected at 24h and 48h for an ELISA to detect the amount of secreted anti-EpCAM BiTE molecule NbO1 -O13A.
- human EpCAM-Fc tag protein was used to coat the ELISA plate overnight, after blocking with Casein for 2 hours, the culture supernatants containing the anti-EpCAM BiTE molecule NbO1 -O13A were added to the plate. After 1 -hour incubation, the plate was washed and the bound BiTE molecules were detected by an HRP conjugated secondary antibody against the His-tag.
- Figure 15 shows a graph demonstrating that human GE CAR-BiTE T cells using anti-EpCAM VHH constructed BiTEs showed superior tumor killing in in vivo Hep3B xenografts.
- Two million Hep3B (GPC3 High , EpCAM High ) cells were subcutaneously injected into the right flank of 50 male NSG mice (Day -21 ).
- mice were regrouped according to the measurable tumor size and eight million CAR T (5C4) cells, GE CAR-BiTE T cells (Anti-EpCAM BiTE secreting anti-GPC3 CAR T cells, “MT110”, “Nb01 -013A” or “NbO1 -O13B” was used as BiTE), 19E CAR-BiTE T cells (Anti-EpCAM BiTE secreting anti-CD19 CAR T cells, “NbO1-O13A” or “NbO1-O13B” was used as BiTE), or Mock T cells were intravenously injected into these mice via tail vein. Tumor sizes of each mouse were measured and recorded every 3 to 7 days. The curve shows tumor sizes up to Day 92.
- Figure 16 shows a graph demonstrating that human HE CAR-BiTE T cells using anti-EpCAM VHH constructed BiTEs showed superior tumor killing in in vivo AGS xenografts.
- 1.3 million AGS (Her2 H ' ah , EpCAM High ) cells were subcutaneously injected into the right flank of female NSG mice (Day -9).
- mice were re-grouped according to the measurable tumor size and five million CAR T (4D5) cells, CAR T (F5) cells, HE CAR-BiTE T (4D5) cells (“NbO1 -O13A” was used as BiTE), HE CAR-BiTE T (F5) cells (“Nb01 -013A” was used as BiTE), or Mock T cells were intravenously injected into these mice via tail vein. Tumor sizes of each mouse were measured and recorded every 3 to 7 days.
- Example embodiments of the disclosure will be better understood and readily apparent to one of ordinary skill in the art from the following discussions and if applicable, in conjunction with the figures. It should be appreciated that other modifications may be made without deviating from the scope of the invention.
- Example embodiments are not necessarily mutually exclusive as some may be combined with one or more embodiments to form new exemplary embodiments. The example embodiments should not be construed as limiting the scope of the disclosure.
- Example 1 Discovery of fully human anti-EpCAM antibodies from naive human Fab phage display library
- EpCAM had high level of expression on all cells tested with epithelial morphology such as a lung adenocarcinoma cell line HT-29, a gastric adenocarcinoma cell line AGS, a hepatoblastoma cell line HepG2, a hepatocellular carcinoma cell line Hep3B, and a breast cancer cell line MCF-7.
- EpCAM was not expressed on non-epithelial cells, such as human T cells, an ovarian cell line HeyA8, and two glioblastoma cell lines A172 and U-87.
- biotinylated recombinant human EpCAM protein with a poly-His tag (hEpCAM-His) was used to isolate low-affinity EpCAM binders from a naive library of Fab sequences constructed in SlgN, using phage display technology.
- hEpCAM-His biotinylated recombinant human EpCAM protein with a poly-His tag
- Clone 1 B6, 1 C1 , 1 C11 , 1 D4 and 1 H6 share the same sequence in the heavy chain variable regions, however the light chain sequences of the variable region are different, except for clone 1 B6 and 1 C1 which also share the same sequences in their light chain variable region but bearing three amino acid differences in the kappa light chain constant region (see Annex).
- the results of binding ELISA and flow cytometry analysis of cell binding using Fab supernatants for the 6 unique clones were shown in Figure 2A and Figure 2B, respectively.
- these Fab antibodies were cloned into lgG1 format and their binding affinity to the antigen protein were determined by affinity binding ELISA (Figure 2C).
- binding EC50 values ranged between 3 to 6 nM, which are higher than the binding EC50 of the benchmark IgG (1 .161 nM, the sequence of the anti-EpCAM arm of “MT110” was used), suggesting that these anti-EpCAM antibodies derived from the human naive Fab library had a relatively low binding affinity to the EpCAM antigen.
- the anti-EpCAM antibodies were used to construct anti-EpCAM bi-specific T-cell engagers (BiTE).
- the Fab region of one arm from each of the 6 anti- EpCAM human antibody clones (1 B6, 1C1 , 1011 , 1 D4, 1 E4 and 1 H6) was replaced by an anti-CD3 scFv fragment, and knob-in-hole mutations were introduced to facilitate correct heavy-chain pairing and LALA mutations to remove Fey receptor binding (Figure 3A).
- These anti-EpCAM BiTE antibodies were first examined for their binding to the antigen protein by affinity binding ELISA.
- BiTE anti-EpCAM arm of “MT110” with scFv fragment of anti-CD3 clone Okt3, constructed in the same structure as shown in Figure 3A
- BiTE antibodies using the 6 newly identified anti-EpCAM clones showed much lower absorbance reading at 450nm and higher EC50 values, suggesting lower binding affinities to the antigen (Figure 3B).
- results from the above assays, depicted in Figures 1 - 4, showed that the disclosed highly specific human anti-EpCAM antibodies in the format of bispecific T cell engagers could elicit a wide range of low to high potency in inducing cell death of EpCAM expressing cells, which have the potential to be used in treating solid tumors with enhanced safety profiles (based on in vitro binding and killing assay results).
- the present inventors immunized a male alpaca with recombinant human EpCAM protein with a poly-His tag (hEpCAM- His) for a total of six immunizations with time intervals of 1 -2 weeks.
- the process of llama immunization was done by VIB Nanobody Core at VUB (Vrije Universiteit Brussel) as a paid service.
- Subsequent humanization of the llama antibodies was performed at SlgN. Around 150 pg of proteins was used for the two initial immunizations and 100 pg of proteins were used for the last four booster immunizations.
- peripheral blood lymphocytes were collected from the alpaca for RNA extraction, and cDNA was used as the PCR template to amplify VHH sequences for a VHH library to be constructed.
- Biotinylated recombinant human EpCAM protein with a poly-His tag (hEpCAM-His) was used to isolate EpCAM binders from the constructed llama VHH library, using phage display technology.
- VHH, 2B7-VHH, 2C4-VHH and 2D10-VHH were able to kill 90-100% of EpCAM positive HT-29 (Figure 7A), HepG2 (Figure 7B), and Hep3B (Figure 7C) cells within 96 hours at concentrations as low as 10 pM, but spared EpCAM negative cell HeyA8 ( Figure 7D).
- Figure 7E Among the 5 clones, clone 2B7-VHH, 2C4-VHH and 2D10-VHH all showed very potent cell killing efficacy (Figure 7E), while 2C4-VHH and 2D10-VHH exhibited better killing specificity than 2B7-VHH ( Figure 7D).
- 2C4-VHH and 2D10-VHH shared same CDR sequences but the framework of 2C4-VHH was closer to human VH sequences, 2C4-VHH was chosen as the lead VHH clone for further development.
- a humanized clone hu2C4-VHH was constructed and its antigen binding ability was compared with the parental 2C4-VHH clone using BITE antibodies paired with a well-characterized anti-CD3 agonist Okt3. Humanization resulted in 10 times reduction in the binding affinity to the antigen protein (Figure 8A) and about 2.5 times weaker cell binding (Figure 8B and Figure 8E).
- Example 4 Experiments determine binding affinity of anti-EpCAM human lgG1 antibodies and anti-EpCAM llama VHH antibodies
- Binding affinities of 6 anti-EpCAM IgGi antibodies was measured via Bio-Layer Interferometry (BLI) analysis using Octet RED96 system and shown in Table 1. All 6 antibody clones exhibited binding affinities to the recombinant EpCAM protein at the nanomolar scales ranging from the lowest affinity at 32.39 nM (clone 1 H6) to the highest affinity at 1.432 nM (clone 1 D11 ).
- Binding affinities of 5 anti-EpCAM VHH antibodies was measured via Bio-Layer Interferometry (BLI) analysis using Octet RED96 system and shown in Table 2. All 5 VHH antibody clones were expressed as bivalent Fc fusion protein for the assay and exhibited binding affinities to the recombinant EpCAM protein at the nanomolar scales ranging from the lowest affinity at 9.715 nM (clone 2C4-VHH) to the highest affinity at 1.975 nM (clone 1 B8-VHH).
- Example 5 Experiments demonstrating that human CAR T cells secreting anti- EpCAM BITE molecules showed in v/fro cytotoxicity in killing EpCAM expressing cells.
- the anti-EpCAM bi-specific T-cell engagers using 2C4-VHH paired with either the anti-CD3 clone Okt3 (named as “Nb01 -013A”) or the anti-CD3 clone used in “MT110” (named as “Nb01 -013B”) were used to construct secreted forms of anti-EpCAM BITE with a His-tag.
- These anti-EpCAM BiTEs were inserted into different CAR constructs against different tumor antigens, for example, GPC3, CD19 or HER2.
- anti-EpCAM BITE molecules can be secreted by human T cells and contribute to the cytotoxicity of EpCAM expressing target cell killing.
- the present inventors constructed anti-GPC3 CAR T cells secreting different anti-EpCAM BiTEs (“MT110”, “Nb01-013A”, and “Nb01 -013B”) and named them as GE CAR-BiTE T cells.
- the present inventors also constructed anti-CD19 CAR T cells secreting different anti- EpCAM BiTEs (“Nb01 -013A” or “Nb01 -013B”), which were named as “19E CAR-BiTE T” cells ( Figure 10A).
- the present inventors also constructed HE CAR-BITE T cells by fusing the anti- EpCAM BiTE (sequence of “Nb01 -013A” was used) to the anti-HER2 CAR (clone 4D5 from “Trastuzumab” or our in-house anti-HER2 clone F5) lentiviral construct via a P2A cleavable linker ( Figure 11A).
- both AGS (HER2 High , EpCAM High ) and MDA-MB468 (HER2 ve , EpCAM High ) cells were used to test the in vitro killing efficacy of anti-HER2 CAR T (4D5 or F5) and HE CAR-BiTE T (4D5 or F5) cells.
- the HE CAR-BiTE T cells were shown to be able to kill AGS cells at a much faster rate than the anti-HER2 CAR alone ( Figure 11 D), suggesting the participation of the BiTE in target cell killing.
- clone 4D5 constructed anti-HER2 CAR T cells could not initiate efficient killing of AGS cells ( Figure 11 D) with low level of Interferon-y secretion ( Figure 11 F), suggesting that the cytotoxic function of the HE CAR-BiTE T cells (clone 4D5) was mainly contributed by the secreted anti-EpCAM BiTE. More interestingly, anti-HER2 CAR T cells (clone 4D5) showed comparable level of killing of HER2 negative MDA-MB468 cells, while the anti- HER2 CAR T cells constructed using our patented clone F5 showed high specificity by sparing the HER2 negative cells ( Figure 11 E and 11 G).
- Example 6 Experiments showing that anti-EpCAM BiTE secreted by CAR T cells can elicit strong T cell mediated killing of cancer cells
- the time-course measurement of BiTE elicited T cell-mediated cytotoxicity was performed by xCelligence impedance assay.
- Example 7 Experiments demonstrating that secretion of anti-EpCAM llama VHH BITE from different CAR-BITE T cells can be detected from the in vitro cultures
- Both anti-GPC3 CAR T (5C4) and GE CAR-BiTE T (Nb01 -013A) cells were cultured in T cell growth medium containing IL-7 and IL-15 at the starting cell density of 0.5 million per ml. Cell culture supernatants were collected daily for a consecutive four days, followed by an ELISA to detect the amount of secreted anti-EpCAM BITE molecule Nb01 -013A. The results clearly showed that the amount of secreted NbO1-O13A molecules increased over time, suggesting a continuous secretion and accumulation of anti-EpCAM VHH BiTE from the GE CAR-BiTE T (Nb01 -013A) cell cultures ( Figure 13).
- the Nb01 -013A BiTE molecules can also be detected from HE CAR- BiTE T (4D5) and HE CAR-BiTE T (F5) cells from the in vitro cultures.
- Anti-HER2 CAR T (4D5 or F5) cells or HE CAR-BiTE T (4D5 or F5) cells were cultured in T cell growth medium containing IL-7 and IL-15 at the starting cell density of 1.5 million per ml. Cell culture supernatants were collected at 24h and 48h followed by an ELISA to detect the amount of secreted anti-EpCAM BiTE molecule NbO1 -O13A.
- Example 8 Experiments demonstrating that human CAR T cells secreting anti- EpCAM BiTE molecules showed superior in vivo cytotoxicity in killing EpCAM expressing tumors.
- Hep3B GPC3 Highh , EpCAM Highh xenograft models in NSG mice to test anti-GPC3 CAR T cells secreting different anti-EpCAM BiTE molecules (“MT110”, “Nb01 -013A”, and “NbO1-O13B”) as well as anti-CD19 CAR T cells secreting different anti-EpCAM BiTE molecules (“Nb01 -013A” or “Nb01 -013B”) ( Figure 15).
- GE CAR-BiTE T (“Nb01-013A” or “Nb01 - 013B” used as BiTE) cells generated using the same T cell donor showed much potent tumor control efficacies, suggesting that replacing the anti-EpCAM arm with the presently disclosed anti-EpCAM 2C4-VHH significantly improved the in vivo expansion as well as the in vivo killing potency of the GE CAR-BiTE T cells.
- this example indicates that human CAR T cells secreting anti- EpCAM BiTE molecules derived from in-house anti-EpCAM 2C4-VHH showed superior in vivo cytotoxicity in killing EpCAM expressing tumors.
- antigen binding proteins variants and fragments thereof may be useful for one or more of the following:
- Anti-EpCAM BiTEs incorporating the disclosed human Fab clones can be used in treating EpCAM high solid tumors due to their low affinity to the EpCAM antigen protein;
- Anti-EpCAM BiTEs incorporating the llama VHH clones or humanized VHH clone can be used as locally secreted molecules in treating EpCAM positive solid tumors
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- General Health & Medical Sciences (AREA)
- Animal Behavior & Ethology (AREA)
- Public Health (AREA)
- Veterinary Medicine (AREA)
- Epidemiology (AREA)
- Chemical & Material Sciences (AREA)
- Immunology (AREA)
- Organic Chemistry (AREA)
- Medicinal Chemistry (AREA)
- Biophysics (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Biochemistry (AREA)
- Cell Biology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
- Pharmacology & Pharmacy (AREA)
- Peptides Or Proteins (AREA)
Abstract
The present invention relates to antigen binding proteins, variants and fragments thereof specific to Epithelial Cellular Adhesion Molecule (EpCAM) and multispecific antigen binding proteins, such as bispecific T cell engagers (BiTEs), which bind to EpCAM and also other targets. Also provided are compositions comprising the antigen binding proteins, variants and fragments thereof, a cell expressing/secreting the same, a method of treatment employing the antigen binding proteins, variants and fragments thereof, and other uses thereof. In an embodiment, the cell is an Immune cell, for example selected from the group comprising a T cell, a macrophage, a monocyte, and an NK cell. In a more specific embodiment, the cell is a CAR T-cell.
Description
MULTISPECIFIC ANTIGEN BINDING PROTEIN AGAINST EpCAM
TECHNICAL FIELD
The present disclosure relates broadly to antigen binding proteins, variants and fragments thereof specific to Epithelial Cellular Adhesion Molecule (EpCAM). In particular, the present disclosure encompasses the nucleotide and amino-acid sequences of 6 human antibodies, 5 llama antibodies and 1 humanized llama antibody, or the antigen-binding portions thereof, that specifically target human EpCAM, both in solution and on the surface of cells. Also provided are multispecific antigen binding proteins, such as bispecific T cell engagers (BiTEs), which bind to EpCAM and also other targets.
BACKGROUND
In 2020, there was an estimated 19.3 million new cancers reported worldwide, and the cancer incidence is expected to rise to 28.4 million cases in 2040. Among all adult human cancer cases, approximately 90% are solid tumors. Solid tumors such as lung cancer, liver cancer, stomach cancer and female breast cancer are among the leading causes of cancer-related death. The global high cancer incidence burden, coupled with poor treatment outcomes and survival rates with standard treatment modalities of surgery, chemotherapy and radiotherapy presents a strong need for the development of more effective treatment options for cancer.
Advanced therapeutics such as antibody-based or cell-based immunotherapies, offers a new paradigm in oncology, and hold immense potential for more effective treatments for cancers compared to conventional treatment strategies. As a result, antibody and cell-based therapies are increasingly gaining immense attention and investments for its development as a potential more promising standard of care for the treatment of cancer. However, even equipped with powerful cytotoxic killing mechanisms such as bi-specific T-cell engager (BiTE) and antibody-drug conjugates (ADC), antibodybased targeted therapies rarely cure patients with solid tumors. Cell-based therapy such as chimeric antigen receptor (CAR) T achieves great success in haematological malignancy but shows limited efficacy in treating solid tumors. Among the complex difficulties each approach has encountered, one intrinsic problem is with regards to the
heterogeneous distribution of tumor markers in the cell populations of solid tumors and antigen escape upon treatment. To overcome these challenges, there is urgent medical need to explore next-generation immunotherapy to prevent cancer relapse.
Overexpression of cancer antigens such as GPC3, Her2, and Claudin18.2 has been found in various cancer types and known as promising targets for antibody or CAR- T cell-based immunotherapies. Nevertheless, single targeting to a known tumor antigen has been clinically proven to have limited efficacy. Epithelial cell adhesion molecule (EpCAM) is a transmembrane glycoprotein that is widely expressed in almost all epithelia and epithelial-derived neoplasms, and represents a different category of biomarkers. Additional targeting to EpCAM would be an attractive treatment regime to overcome the challenge of tumor heterogeneity.
However, as EpCAM is also widely expressed at low levels on normal epithelia, anti-EpCAM T-cell engagers have been demonstrated to be highly toxic to normal tissues. As a result, high affinity anti-EpCAM BiTE antibodies such as Solitomab and Catumaxomab showed dose-limiting toxicities and were unable to achieve FDA approval.
Hence, developing low-affinity anti-EpCAM clones used for EpCAM-targeting T cell engagers, and which may spare normal epithelial cells with low EpCAM levels, is in urgent need.
SUMMARY
Traditional methods in antibody discovery often start with multiple immunization steps in animals, such as mouse and rabbit, with antigen proteins. This normally results in identification of high-affinity binders of non-human origin. After extensive characterization of their properties, an extra step of humanization is usually required to avoid immunogenicity for further development. However, humanization process always involves complicated antibody engineering and the empirically derived humanized clones may greatly lose the binding affinity or the stability of the original clones. Using the present inventors’ in-house naive human Fab phage display library, they were able to identify low-affinity EpCAM binders in a simple and easy way.
The presently disclosed fully human anti-EpCAM antibodies (1 B5, 1C1 , t d f , 1 D4, 1 E4 and 1 H6). despite their relatively low binding affinity, exhibited potent cytotoxic activity when used in a BiTE format to mediate target specific cell killing. Applications
using the BiTE format can therefore overcome issues of immunogenicity and high toxicity/low tolerability brought by high-affinity non-human anti-EpCAM antibodies as shown by most prior arts.
On the other hand, compared to the conventional scFv formats of BiTEs, which often suffer from poor stability and low expression yield due to difficulty in proper folding, the nanobody format of BiTE have superior advantages: i) high stability; ii) large production yield; and iii) small gene size to be packaged in the lentivirus system to achieve high T cell transduction efficiency
Hence, the present inventors have also generated anti-EpCAM nanobodies of llama-derived single-domain antibody fragments (VHH) against EpCAM, which can be fused to many different anti-CD3 T cell agonist antibodies via a flexible linker. These BiTE antibodies can be used for targeting EpCAM locally. As an example, by using CAR- T cells secreting anti-EpCAM BiTE, the present inventors could achieve not only the specific tumor antigen directed T cell expansion but also tumor restricted expression of BiTE targeting a more widely expressed tumor antigen EpCAM to avoid toxicity brought by the traditional systemic delivery.
In one aspect, there is provided an antigen binding protein, an antigen binding variant, or an antigen binding fragment thereof that binds specifically to Epithelial Cellular Adhesion Molecule (EpCAM), wherein the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and/or a light chain variable region selected from the group consisting of:
(i) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and
a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ii) a heavy chain variable region comprising: a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iii) a light chain variable region comprising: a CDR-L1 comprising:
• QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-L2 comprising:
• LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• AAS (SEQ ID NO: 20) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising:
• MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• MQGLQSPWT (SEQ ID NO: 15) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• QQSYIMPDT (SEQ ID NO: 21) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• MQGLQTPYT (SEQ ID NO: 23) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
(iv) a heavy chain variable region comprising: a CDR-H1 comprising:
• GSIFSGND (SEQ ID NO: 25 ) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-H2 comprising:
• ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto and a CDR-H3 comprising:
• TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
In one embodiment, the antigen binding protein, variant or fragment thereof of comprises a heavy chain variable region selected from the group consisting of:
(i) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ii) a heavy chain variable region comprising: a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and comprises a light chain variable region comprising: a CDR-L1 comprising:
• QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-L2 comprising:
• LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• AAS (SEQ ID NO: 20) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising:
• MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• MQGLQSPWT (SEQ ID NO: 15) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• QQSYIMPDT (SEQ ID NO: 21) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• MQGLQTPYT (SEQ ID NO: 23 ) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
In one embodiment, the antigen binding protein, variant or binding fragment thereof comprises a heavy chain variable region comprising: a CDR-H1 comprising:
• GSIFSGND (SEQ ID NO: 25 ) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-H2 comprising:
• ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a CDR-H3 comprising:
• TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and/or a light chain variable region selected from the group consisting of:
(i) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ii) a heavy chain variable region comprising: a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iii) a light chain variable region comprising:
a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iv) a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQSPWT (SEQ ID NO: 15) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(v) a light chain variable region comprising: a CDR-L1 comprising QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(vi) a light chain variable region comprising: a CDR-L1 comprising QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
a CDR-L2 comprising AAS (SEQ ID NO: 20) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising QQSYIMPDT (SEQ ID NO: 21) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(vii) a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQTPYT (SEQ ID NO: 23) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(viii) a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ix) a heavy chain variable region comprising: a CDR-H1 comprising GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and
a CDR-H3 comprising MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
(x) a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and a light chain variable region selected from the group consisting of:
(i) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and
a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ii) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQSPWT (SEQ ID NO: 15) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iii) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
a light chain variable region comprising: a CDR-L1 comprising QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iv) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQTPYT (SEQ ID NO: 23) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
(v) a heavy chain variable region comprising:
a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising AAS (SEQ ID NO: 20) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising QQSYIMPDT (SEQ ID NO: 21) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region selected from the group consisting of:
(I) a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ii) a heavy chain variable region comprising:
a CDR-H1 comprising GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
(iii) a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a heavy chain variable domain and/or a light chain variable domain selected from the group consisting of:
(i) a heavy chain variable domain comprising
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLE WMGGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVY YCARSLGGRFRYWGQGTL (SEQ ID NO: 4 - 1 B6, 1 C1 , 1 C11 , 1 D4 and 1 H6) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(ii) a heavy chain variable domain comprising
QVQLQQSGPGLVKPSQTLSLTCAISGDSISSNSVAWNWIRQSPSRGL EWLGRTYYRSKWYSDYAISVKGRLDINPDTSKNQFSLQLNSVTPEDT AVYYCAREVEGSSYDAFDIWGQGTM (SEQ ID NO: 8) or a fragment,
variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions,
(iii) a light chain variable domain comprising DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQ SPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCM QALQTPYTFGQGTK (SEQ ID NO: 12) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(iv) a light chain variable domain comprising EIVLTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQS PQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQ GLQSPWTFGQGTK (SEQ ID NO: 16) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(v) a light chain variable domain comprising DVVMTQSPLSLPVTPGESASISCRSSQSLLHSNRYNYLDWYLQKPGQ SPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCM QALQTPYTFGQGTK (SEQ ID NO: 18) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(vi) a light chain variable domain comprising
DIQLTQSPSSLSASVGDRVTITCRASQSISDFLNWYQQKPGKAPKLLIY AASSLQTGVPSRFGGSGSGTEFTLTISSLQPEDLGTYYCQQSYIMPDT FGQGTK (SEQ ID NO: 22) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(vii) a light chain variable domain comprising DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQ SPQLLIYLGSNRASGVPDRFSGSGSGTDFTLQISRVEAEDAGVYYCM
QGLQTPYTFGQGTK (SEQ ID NO: 24 ) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(viii) a heavy chain variable domain comprising QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 28) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(ix) a heavy chain variable domain comprising QVQLQESGGGLVQPGGSLRLSGAASGSSERFTSVAWYRQAPGKERE LVAFITNGGSTRYTDPVKGRFTISRDNAKNTVYLQMNSLKAEDTAVYY CMAGTSWGQGTQ (SEQ ID NO: 32) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(x) a heavy chain variable domain comprising QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHLWGQGTQ (SEQ ID NO: 34) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(xi) a heavy chain variable domain comprising QVQLQESGGGLVQAGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 35) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(xii) a heavy chain variable domain comprising QVQLQESGGGLVQAGDSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 36) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions; and a heavy chain variable domain comprising QVQLVESGGGLVQAGGSLRLSCAASGSIFSGNDMSWYRQAPGKGLE LVAVITSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY CTNGRWSGDTYYAHHWGQGTL (SEQ ID NO: 37 ) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a heavy chain variable domain and a light chain variable domain selected from the group consisting of:
(i) a heavy chain variable domain comprising:
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain comprising DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSP QLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQT PYTFGQGTK (SEQ ID NO: 12) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(ii) a heavy chain variable domain comprising: EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence
thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain comprising
EIVLTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQ LLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGLQSP WTFGQGTK (SEQ ID NO: 16) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(iii) a heavy chain variable domain comprising:
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain comprising
DVVMTQSPLSLPVTPGESASISCRSSQSLLHSNRYNYLDWYLQKPGQSP QLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQT PYTFGQGTK (SEQ ID NO: 18) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions (iv) a heavy chain variable domain comprising:
QVQLQQSGPGLVKPSQTLSLTCAISGDSISSNSVAWNWIRQSPSRGL EWLGRTYYRSKWYSDYAISVKGRLDINPDTSKNQFSLQLNSVTPEDT AVYYCAREVEGSSYDAFDIWGQGTM (SEQ ID NO: 8) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain comprising
DIQLTQSPSSLSASVGDRVTITCRASQSISDFLNWYQQKPGKAPKLLIYA ASSLQTGVPSRFGGSGSGTEFTLTISSLQPEDLGTYYCQQSYIMPDTFG QGTK (SEQ ID NO: 22) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(v) a heavy chain variable domain comprising: EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain
DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSP QLLIYLGSNRASGVPDRFSGSGSGTDFTLQISRVEAEDAGVYYCMQGLQT PYTFGQGTK (SEQ ID NO: 24) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a single domain heavy chain variable domain having a sequence:
(i) QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 28) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(ii) QVQLQESGGGLVQPGGSLRLSCAASGSSERFTSVAWYRQAPGKERE LVAFITNGGSTRYTDPVKGRFTISRDNAKNTVYLQMNSLKAEDTAVYY CMAGTSWGQGTQ (SEQ ID NO: 32) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(iii) QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHLWGQGTQ (SEQ ID NO: 34) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(iv) QVQLQESGGGLVQAGGSLRLSGADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY
CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 35) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(v) QVQLQESGGGLVQAGDSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 36) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(vi) QVQLVESGGGLVQAGGSLRLSCAASGSIFSGNDMSWYRQAPGKGLE LVAVITSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY CTNGRWSGDTYYAHHWGQGTL (SEQ ID NO: 37) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a light chain constant domain having a sequence:
(i) RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG NSQESVAEQDSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQGLSSPVTK SFNRGEC (SEQ ID NO: 13) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(ii) RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK SFSRGEC (SEQ ID NO: 14) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
In one embodiment, the antigen binding protein, variant or fragment thereof is an IgG antibody, in particular an lgG1 antibody.
In one embodiment, the antigen binding protein, variant or fragment thereof is a multi-specific antigen binding protein, variant or fragment thereof, such as a bispecific antibody.
In one embodiment, the multi-specific antigen binding protein, variant or fragment thereof binds to an immune marker selected from the group consisting of CD3, NKG2D, CD4, CD8, CD16 and CD64.
In one embodiment, the antigen binding protein, variant or fragment thereof is a bispecific T cell engager (BiTE).
In one embodiment, the bispecific T cell engager (BiTE) comprises an anti- EpCAM Heavy chain antibody variable region (i.e. VHH) or a single chain variable fragment (scFv).
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a Fc region.
In one aspect, there is provided a polynucleotide encoding the antigen binding protein, variant or fragment thereof of any one of the preceding claims.
In one embodiment, the heavy chain variable domain is encoded by a nucleotide sequence comprising:
(i) GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCGCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTA CGCACAGAACTTCCAGGGCAGAGTCACCATGACCGCAGACACCTC CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(ii) CAGGTACAGCTGCAGCAGTCAGGTCCAGGGCTGGTGAAGCCCTC GCAGACCCTCTCACTCACCTGTGCCATCTCCGGGGACAGTATCTC TAGTAACAGTGTTGCTTGGAACTGGATCAGGCAGTCCCCATCGAG AGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAGTGGT ACAGTGATTATGCAATATCTGTGAAAGGTCGATTAGACATCAACCC AGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACT CCCGAGGACACGGCTGTGTATTATTGTGCAAGAGAAGTTGAGGGC AGCAGCTATGATGCTTTTGATATCTGGGGCCAAGGGACAATG (SEQ ID NO: 45) or a sequence at least 80%, 85%, 90%, 95%, 96%,
97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions;
(iii) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG AGGGTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG
CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACCGTATATCTGCAAACGAACGACTTGAAACCTGAGGACAC
GGGCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTA CTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 65) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(iv) GAGGTGGAGGTGCAGGAGTGTGGGGGAGGCTTGGTGCAGCCTGG GGGGTCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCTCCGAAAG ATTCACATCAGTGGCCTGGTACCGCCAGGCTCCAGGAAAGGAGC GCGAGTTGGTCGCATTTATTACTAATGGTGGTAGCACAAGATATAC
AGAGCGCGTGAAGGGGCGATTCACCATCTCGAGAGACAACGCCAA GAACACGGTGTATCTGCAAATGAACAGCCTGAAAGCTGAGGACAC GGCCGTCTATTATTGTATGGCGGGTACGTCCTGGGGCCAGGGGAC CCAG (SEQ ID NO: 69) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(v) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG AGGGTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG
CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACA CGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTT ACTATGCCCATCTCTGGGGCCAGGGGACCCAG (SEQ ID NO: 71) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(vi) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGG GGGCTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACA CGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTT ACTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 72) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(vii)CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGG GGACTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGT GGCAATGACATGGCCTGGTACGGCCGGGCTCCAGGGGTGGAGCG CGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATGC AGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCCA GAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACAC GGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTA CTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 73) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(viii) CAGGTGCAGCTGGTGGAGTCTGGGGGAGGATTGGTGCAGG CTGGGGGCTCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCATCT TCAGTGGCAATGACATGTCCTGGTACCGCCAGGCTCCAGGGAAG GGACTCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACATAC TATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATT CCaAGAAcACCcTATATCTGCAAATGAACAGCCTGAGAGCTGAGGA CACGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATA CTTACTATGCCCATCACTGGGGCCAGGGGACCCTG (SEQ ID NO: 74) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions; and/or the light chain variable domain is encoded by a nucleotide sequence comprising:
(i) GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGAAAATGAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT
TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGG ACCAAG (SEQ ID NO: 49) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(ii) GAAATTGTGCTGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGGAGAAGCCAG GGCAGTCTGCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGTACAGATTT TACACTGAAAATAAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT
TACTGCATGCAAGGTCTACAAAGTCCCTGGACGTTCGGCCAAGGG ACCAAG (SEQ ID NO: 53) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(iii) GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGTCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATAGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT
TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGG ACCAAG (SEQ ID NO: 55) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(iv) GACATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAG GAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGTATTAGCG ACTTTTTAAATTGGTACCAGCAGAAACCAGGTAAAGCCCCGAAGCT
CCTGATCTATGCTGCATCGAGTTTACAAACTGGGGTCCCCTCAAGA TTCGGTGGCAGTGGATCTGGGACAGAATTCACTCTCACCATAAGCA GTCTACAACCTGAAGATTTGGGAACTTATTACTGTCAACAGAGTTA CATTATGCCCGACACTTTTGGCCAGGGGACGAAA (SEQ ID NO: 59) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGGCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGCAAATCAGCAGAGTGGAGGCTGAGGATGCTGGGGTTTA TTACTGCATGCAAGGTCTACAGACTCCGTACACTTTTGGCCAGGG GACCAAG (SEQ ID NO: 61 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having I D- 20 nucleic acid substitutions.
In one embodiment, the heavy chain and light chain variable domains are encoded by nucleotide sequences selected from the group consisting of:
(i) a heavy chain variable domain encoded by the nucleotide sequence comprising:
GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTA CGCACAGAACTTCCAGGGCAGAGTCACCATGACCGCAGACACCTC CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGAAAATGAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGG ACCAAG (SEQ ID NO: 49) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions
(ii) a heavy chain variable domain encoded by the nucleotide sequence comprising:
GAGGTCGAGGTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTA GGCACAGAACTTCCAGGGCAGAGTCACCATGACCGCAGACACCTC CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG
CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
GAAATTGTGCTGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGTAGAGATTT TACACTGAAAATAAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT
TACTGCATGCAAGGTCTACAAAGTCCCTGGACGTTCGGCCAAGGG ACCAAG (SEQ ID NO: 53) or a sequence at least 80%, 85%, 90%, 95%,
96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions
(iii) a heavy chain variable domain encoded by the nucleotide sequence comprising:
GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTA GGCACAGAACTTCGAGGGCAGAGTCACCATGACGGCAGAGAGCTC CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
GATGTTGTGATGACTCAGTCTGCACTCTGCCTGCCCGTCACCCGTG GAGAGTCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATAGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC
GGGGGTCCCTGAGAGGTTGAGTGGCAGTGGATCAGGCACAGATTT TACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGG ACCAAG (SEQ ID NO: 55) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions
(iv) a heavy chain variable domain encoded by the nucleotide sequence comprising:
GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTA CGCACAGAACTTCCAGGGCAGAGTCACCATGACCGCAGACACCTC
CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG
GAGAGCCGGGCTCGATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGCAAATCAGCAGAGTGGAGGCTGAGGATGCTGGGGTTTA TTACTGCATGCAAGGTCTACAGACTCCGTACACTTTTGGCCAGGG
GACCAAG (SEQ ID NO: 61) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having I D- 20 nucleic acid substitutions; and
(v) a heavy chain variable domain encoded by the nucleotide sequence comprising:
CAGGTACAGCTGCAGCAGTCAGGTCCAGGGCTGGTGAAGCCCTC
GGAGACGCTCTCACTCACCTGTGCCATCTCCGGGGACAGTATCTC TAGTAACAGTGTTGCTTGGAACTGGATCAGGCAGTCCCCATCGAG AGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAGTGGT ACAGTGATTATGCAATATCTGTGAAAGGTCGATTAGACATCAACCC AGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACT CCCGAGGACACGGCTGTGTATTATTGTGCAAGAGAAGTTGAGGGC AGCAGCTATGATGCTTTTGATATCTGGGGCCAAGGGACAATG
(SEQ ID NO: 45) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
GACATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAG GAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGTATTAGCG ACTTTTTAAATTGGTACCAGCAGAAACCAGGTAAAGCCCCGAAGCT CCTGATCTATGCTGCATCGAGTTTACAAACTGGGGTCCCCTCAAGA TTCGGTGGCAGTGGATCTGGGACAGAATTCACTCTCACCATAAGCA GTCTACAACCTGAAGATTTGGGAACTTATTAGTGTCAACAGAGTTA CATTATGCCCGACACTTTTGGCCAGGGGACGAAA (SEQ ID NO: 59) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions.
In one embodiment, the single domain heavy chain variable domain is encoded by a nucleotide sequence comprising
(i) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG AGGGTCTGTGAGACTCTGCTGTGCAGACTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACCGTATATCTGCAAACGAACGACTTGAAACCTGAGGACAC GGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTA CTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 65) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(ii) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG GGGGTCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCTCCGAAAG ATTCACATCAGTGGCCTGGTACCGCCAGGCTCCAGGAAAGGAGC GCGAGTTGGTCGCATTTATTACTAATGGTGGTAGCACAAGATATAC AGACCCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAA GAACACGGTGTATCTGCAAATGAACAGCCTGAAAGCTGAGGACAC GGCCGTCTATTATTGTATGGCGGGTACGTCCTGGGGCCAGGGGAC CCAG (SEQ ID NO: 69) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACA CGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTT ACTATGCCCATCTCTGGGGCCAGGGGACCCAG (SEQ ID NO: 71) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(iv) GAGGTGGAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGG GGGCTCTCTGAGAGTCTCCTGTGGAGACTGTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG GAGACTCGGTGAAGGGGCGATTGAGCATCTCGAGAGACAATGCGC
AGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACA CGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTT ACTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 72) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(v) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGG GGACTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGT GGCAATGACATGGCCTGGTACGGCCGGGGTCCAGGGGTGGAGCG CGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATGC AGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCCA
GAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACAC GGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTA CTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 73) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(vi) CAGGTGCAGCTGGTGGAGTCTGGGGGAGGATTGGTGCAGGCTGG GGGCTCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCATCTTCAG TGGCAATGACATGTCCTGGTACCGCCAGGCTCCAGGGAAGGGACT GGAGTTGGTCGGGGTTATTACTAGCGGTGGTAGTACATACTATGC AGAGTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCaAG
AAcACCcTATATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGG CCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTACT ATGCCCATCACTGGGGCCAGGGGACCCTG (SEQ ID NO: 74) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions.
In one embodiment, the light chain constant domain is encoded by a nucleotide sequence comprising
(i) CGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATG AGCAGTTGAAATCTGGAACTGGCTCTGTTGTGTGCGTGCTGAATAA CTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC CCTCCAATCGGGTAACTCCCAGGAGAGTGTCGCAGAGCAGGACAG CAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCTGAGCAA AGCAGAGTAGGAGAAAGAGAAACTCTACGCGTGCGAAGTCACCCAT CAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAGA GTGT (SEQ ID NO: 50) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(ii) CGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATG AGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAA CTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC CCTCCAATCGGGTAACTCCCAGGAGAGTGTCACAGAGCAGGACAG CAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCTGAGCAA AGCAGACTACGAGAAACACAAAGTCTACGCCTGCGAAGTCACCCA TCAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAGCAGGGGAGA GTGT (SEQ ID NO: 51) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions.
In one aspect, there is provided a vector expressing the polynucleotide as described above.
In one aspect, there is provided a host cell comprising the vector as described above.
In one aspect, there is provided a cell expressing/secreting the antigen binding protein, variant of fragment thereof as described above.
In one aspect, there is provided a cell expressing/secreting an immune cell engager which is specific to EpCAM.
In one embodiment, the immune cell engager is selected from the group comprising a T cell engager, an NK cell engager, a monocyte engager and a macrophage engager.
In one embodiment, the immune cell engager is a bispecific T cell engager (BITE), such as an inducible BiTE, non-inducible BiTE or a constitutive expression BiTE comprising the antigen binding protein, variant of fragment thereof as described above.
In one embodiment, the cell is an immune cell, for example selected from the group comprising a T cell, a macrophage, a monocyte and an NK cell.
In one embodiment, the immune cell is a T-cell, in particular a CAR T-cell.
In one embodiment, the cell is a stem cell, for example selected from the group comprising a mesenchymal stem cell, a neural stem cell and a pluripotent stem cell, such as an induced pluripotent stem cell (iPSC).
In one aspect, there is provided a composition comprising the antigen binding protein, variant or fragment thereof and/or cell as described above.
In one aspect, there is provided an antigen binding protein, variant or fragment thereof, cell or a composition as described above for use in treatment of a disease.
In one aspect, there is provided a method of treating a disease in a subject in need thereof, comprising administering to the subject an antigen binding protein, variant or fragment thereof, cell or a composition as described above.
In one aspect, there is provided a use of the antigen binding protein, variant or fragment thereof, cell or the composition as described above in the manufacture of a medicament for preventing and/or treating a disease.
In one embodiment, the disease is a proliferative disease such as a tumor or cancer.
In one aspect, there is provided a method of diagnosis / determining the prognosis or presence of a solid tumor originating from epithelium comprising detecting the expression of high EpCAM on the solid tumor using the antigen binding protein, variant or fragment thereof or a composition as described above.
DEFINITIONS
The term “antigen binding protein” herein is used in the broadest sense and encompasses various antibody structures, including but not limited to monoclonal antibodies, polyclonal antibodies, multi-specific antibodies as long as they exhibit the desired antigen-binding activity.
The term “antibody” as used herein relates to whole (i.e., full length) antibodies (i.e., comprising the elements of two heavy chains and two light chains) and functionally active fragments thereof (i.e., molecules that contain an antigen binding domain that specifically binds an antigen, also termed antibody fragments or antigen-binding fragments). Features described herein with respect to antibodies also apply to antibody fragments unless context dictates otherwise. The term "antibody" encompasses monovalent, i.e., antibodies comprising only one antigen binding domain (e.g., one- armed antibodies comprising a full-length heavy chain and a full-length light chain interconnected, also termed “half-antibody”), and multivalent antibodies, i.e., antibodies comprising more than one antigen binding domain, e.g., bivalent.
The term "antigen binding fragment" as employed herein refers to functionally active antibody binding fragments including but not limited to Fab, modified Fab, Fab', modified Fab', F(ab')2, Fv, single domain antibodies, scFv, Fv, bi, tri or tetra-valent antibodies, Bis-scFv, diabodies, triabodies, tetrabodies and epitope-binding fragments of any of the above.
A "binding fragment" as employed herein refers to a fragment capable of binding a target peptide or antigen with sufficient affinity to characterize the fragment as specific for the peptide or antigen.
The term "monoclonal antibody" (or “mAb”) refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e. each individual of a monoclonal antibody preparation are identical except for possible mutations (e.g., naturally occurring mutations), that may be present in minor amounts. Certain differences in the protein sequences linked to post-translational modifications (for example, cleavage of the heavy chain C-terminal lysine, deamidation of asparagine residues and/or isomerization of aspartate residues) may nevertheless exist between the various different antibody molecules present in the composition. Contrary to polyclonal antibody preparations, each monoclonal antibody of a monoclonal antibody preparation is directed against a single determinant on an antigen.
The term “diabody” as employed herein refers to two Fv pairs, a first VH/VL pair and a further VH/VL pair which have two inter-Fv linkers, such that the VH of a first Fv is linked to the VL of the second Fv and the VL of the first Fv is linked to the VH of the second Fv.
The term “tribody” (also referred to a Fab(scFv)2) as employed herein refers to a Fab fragment with a first scFv appended to the C-terminal of the light chain and a second scFv appended to the C-terminal of the heavy chain. The term “tetrabody” as employed herein refers to a format similar to the diabody comprising fours Fvs and four inter-Fv linkers.
The term “multivalent antibody” refers to an antibody comprising more than one antigen binding domain e.g., bivalent.
The term “Fv” refers to two variable domains of full-length antibodies, for example co-operative variable domains, such as a cognate pair or affinity matured variable domains, i.e., a VH and VL pair. The term “scFv” refers to single chain variable fragment which is a fusion protein of the variable regions of the heavy and light chains of the immunoglobulins, connected with a short linker peptide of ten to about 25 amino acids. The term “bis-scFv” as described herein refers to a bispecific scFv.
The term “dsscFv” or “disulphide-stabilised single chain variable fragment” as employed herein refers to a single chain variable fragment which is stabilised by a peptide linker between the VH and VL variable domain and also includes an inter-domain disulphide bond between VH and VL.
The term “DVD-lg” (also known as dual V domain IgG) refers to a full-length antibody with 4 additional variable domains, one on the N-terminus of each heavy and each light chain.
The term “Fab” refers to as used herein refers to an antibody fragment comprising a light chain fragment comprising a VL (variable light) domain and a constant domain of a light chain (CL), and a VH (variable heavy) domain and a first constant domain (CHI) of a heavy chain. Dimers of a Fab’ according to the present disclosure create a F(ab’)2 where, for example, dimerization may be through the hinge. The term “F(ab’)” refers to a monovalent fragment of a single light chain homodimer, which is obtained by pepsin digestion of IgG, followed by reduction of the light chain disulfide bond. The term “F(ab')2” as described herein refers to a fragment of IgG that is prepared by pepsin digestion of IgG. The F(ab’)2 fragment is a disulfide-linked homodimer of the two light
chain dimers, so it retains bivalent epitope binding like whole IgG, but as it lacks the heavy chains, it is smaller in size compared to a whole IgG. F(ab’)2 and F(ab’) fragments do not bind to immunoglobulin receptors on cells, which can be useful for achieving specific staining of the primary antibody target.
The term “DiFab” as employed herein refers to two Fab molecules linked via their C-terminus of the heavy chains or two Fab’ molecules linked via one or more disulfide bonds in the hinge region thereof.
As used herein, the term “nanobody” refers to a single domain antibody (sdAb), with an antibody fragment consisting of a single monomeric variable antibody domain.
The term "antigen binding variant" refers to a polypeptide, for example, an antibody possessing the desired characteristics described herein and comprising a VH and/or a VL that has at least about 80% amino acid sequence identity with a VH and/or a VL of the reference antibody. Such antibody variants include, for instance, antibodies wherein one or more amino acid residues are added to or deleted from the VH and/or a VL domain. Ordinarily, an antibody variant will have at least about 80% amino acid sequence identity, alternatively at least about 85%, 90%, 95%, 96%, 97%, 98%, or 99% amino acid sequence identity, to an antibody described herein. Optionally, variant antibodies will have no more than one conservative amino acid substitution as compared to an antibody sequence provided herein, alternatively no more than about any of 2, 3, 4, 5, 6, 7, 8, 9, or 10 conservative amino acid substitutions as compared to an antibody sequence provided herein.
The term “specifically” as employed herein in the context of antibodies is intended to refer to an antibody that only recognizes the antigen to which it is specific or an antibody that has significantly higher binding affinity to the antigen to which it is specific compared to binding to antigens to which it is non-specific, for example at least 5, 6, 7, 8, 9, 10 times higher binding affinity.
The term "epitope" or “binding site” in the context of antibodies refers to a site (or a part) on an antigen to which the paratope of an antibody binds or recognizes. Epitopes can be formed both from contiguous amino acids (also often called “linear epitopes”) or noncontiguous amino acids formed by tertiary folding of a protein (often called “conformational epitopes”). Epitopes formed from contiguous amino acids are typically retained on exposure to denaturing solvents whereas epitopes formed by folding are typically lost on treatment with denaturing solvents. An epitope typically includes at least
3, and more usually, at least 5-10 amino acids in a unique spatial conformation. Epitopes usually consist of chemically active surface groups of molecules such as amino acids, sugar side chains and usually have specific 3D structural and charge characteristics.
The "class" of an antibody refers to the type of constant domain or constant region possessed by its heavy chain. There are five major classes of antibodies: IgA, IgD, Ig E, IgG, and IgM, and several of these may be further divided into subclasses (isotypes), e.g., IgGI, lgG2, lgG3, lgG4, lgA1 , and lgA2. The heavy chain constant domains that correspond to the different classes of immunoglobulins are called a, d, e, g, and m, respectively.
The term "chimeric antibody" (or antigen-binding fragment thereof) is an antibody molecule (or antigen-binding fragment thereof) in which (a) the constant region, or a portion thereof, is altered, replaced or exchanged so that the antigen binding site (variable region) is linked to a constant region of a different or altered class, effector function and/or species, or an entirely different molecule which confers new properties to the chimeric antibody, e. g., an enzyme, toxin, hormone, growth factor, drug, etc.; or (b) the variable region, or a portion thereof, is altered, replaced or exchanged with a variable region having a different or altered antigen specificity. For example, a mouse antibody can be modified by replacing its constant region with the constant region from a human immunoglobulin. Due to the replacement with a human constant region, the chimeric antibody can retain its specificity in recognizing the antigen while having reduced antigenicity in human as compared to the original mouse antibody.
The term “chimeric antigen receptors” refers to receptor protein that has been engineered to give T cells the new ability to target a specific antigen. The receptors are chimeric in that they combine both antigen-binding and T cell activating functions into a single receptor. CAR T cell therapy uses T cells engineered with CARs to treat cancer. T cells in CAR T immunotherapy are modified to recognize cancer cells in order to more effectively target and destroy them. CAR T cells can be derived either from T cells in a patient's own blood (autologously) or from the T cells of another, healthy, donor (allogeneically). Once isolated from a person, these T cells are genetically engineered to express a specific CAR, which programs them to target an antigen that is present on the surface of tumors. For safety, CAR T cells are engineered to be specific to an antigen that is expressed on a tumor but is not expressed on healthy cells. CAR T cells destroy cells through extensive stimulated cell proliferation, increasing the degree to which they
are toxic to other living cells (cytotoxicity) and by causing the increased secretion of factors that can affect other cells such as cytokines, interleukins and growth factors. The surface of CAR T cells can bear either two types of co-receptors, CD4 and CD8, each with different and interacting cytotoxic effects.
The term “human antibody” or "humanized antibody" (or antigen-binding fragment thereof), as used herein, is intended to include antibodies (and antigen-binding fragments thereof) having variable regions in which both the framework and CDR regions are derived from sequences of human origin. Depending on the amino acid sequence of the constant region of their heavy chains, antibodies or immunoglobulins are divided into the classes: IgA, IgD, IgE, IgG and IgM, and several of these may be further divided into subclasses (subtypes), e.g. lgG1 , lgG2, lgG3, and lgG4, lgA1 , and lgA2. Therefore, human IgG constant region domains may be used, especially of the lgG1 and lgG3 isotypes when the antibody molecule is intended for therapeutic uses and antibody effector functions are required. Alternatively, lgG2 and lgG4 isotypes may be used when the antibody molecule is intended for therapeutic purposes and antibody effector functions are not required. Furthermore, if the antibody contains a constant region, the constant region also is derived from such human sequences. A humanized antibody (or antigen-binding fragment thereof) retains the reactivity of a non-human antibody while being less immunogenic in humans. This can be achieved, for instance, by retaining the non-human CDR regions and replacing the remaining parts of the antibody with their human counterparts (i. e., the constant region as well as the framework portions of the variable region). Additional framework region modifications may be made within the human framework sequences as well as within the CDR sequences derived from the germline of another mammalian species. The humanized antibodies of the present disclosure may include amino acid residues not encoded by human sequences (e. g., mutations introduced by random or site-specific mutagenesis in vitro or by somatic mutation in vivo, or a conservative substitution to promote stability or manufacturing). This definition of a humanized antibody specifically excludes a humanized antibody comprising non-human antigen-binding residues. Human antibodies can be produced using various techniques known in the art, including phage-display libraries, administering the antigen to a transgenic animal that has been modified to produce such antibodies in response to antigenic challenge, but whose endogenous loci have been disabled, e. g., immunized xenomice via a human B-cell hybridoma technology.
The term "recombinant humanized antibody" as used herein, includes all human antibodies that are prepared, expressed, created or isolated by recombinant means, such as antibodies isolated from a host cell transformed to express the humanized antibody, e. g., from a transfectoma, and antibodies prepared, expressed, created or isolated by any other means that involve splicing of all or a portion of a human immunoglobulin gene, sequences to other DNA sequences.
The term “isolated” means, throughout this specification, that the antibody, or polynucleotide, as the case may be, exists in a physical milieu distinct from that in which it may occur in nature. The term “isolated” nucleic acid refers to a nucleic acid molecule that has been isolated from its natural environment or that has been synthetically created. An isolated nucleic acid may comprise synthetic DNA, for instance produced by chemical processing, cDNA, genomic DNA or any combination thereof. An isolated antibody refers to an antibody that is substantially free of other cellular material and/or chemicals.
The term "Complementarity Determining Regions" ("CDRs") refers to amino acid sequences with boundaries determined using any of a number of well-known schemes, including those described by Kabat (i.e., "Kabat" numbering scheme); Al-Lazikani ("Chothia" numbering scheme); ImMunoGenTics (IMGT) numbering ("IMGT" numbering scheme); and the like. The term "Complementarity Determining Regions" ("CDRs") refers to regions of hypervariability that contain the binding domain that interacts with an antigen. Antibodies typically comprise six CDRs: three in the VH (HI, H2, H3), and three in the VL (LI, L2, L3).
As used herein, the term “sequence identity" refers to the percentage sequence identities that are determined with antibody sequences maximally aligned by the Kabat numbering convention. After alignment, if a subject antibody region (e.g., the entire mature variable region of a heavy or light chain) is being compared with the same region of a reference antibody, the percentage sequence identity between the subject and reference antibody regions is the number of positions occupied by the same amino acid in both the subject and reference antibody region divided by the total number of aligned positions of the two regions, with gaps not counted, multiplied by 100 to convert to percentage.
“Conservative substitutions” may be made, for instance, on the basis of similarity in polarity, charge, size, solubility, hydrophobicity, hydrophilicity, and/or the amphipathic nature of the amino acid residues involved. The 20 naturally occurring amino acids can
be grouped into the following six standard amino acid groups: (1 ) hydrophobic: Met, Ala, Vai, Leu, lie; (2) neutral hydrophilic: Cys, Ser, Thr; Asn, Gin; (3) acidic: Asp, Glu; (4) basic: His, Lys, Arg; (5) residues that influence chain orientation: Gly, Pro; and (6) aromatic: Trp, Tyr, Phe.
As used herein, “conservative substitutions” are defined as exchanges of an amino acid by another amino acid listed within the same group of the six standard amino acid groups shown above. For example, the exchange of Asp by Glu retains one negative charge in the so modified polypeptide. In addition, glycine and proline may be substituted for one another based on their ability to disrupt a-helices.
As used herein, “non-conservative substitutions” are defined as exchanges of an amino acid by another amino acid listed in a different group of the six standard amino acid groups (1 ) to (6) shown above.
The term “affinity” refers to the strength of all noncovalent interactions between an antibody thereof and the target protein. Unless indicated otherwise, as used herein, the term "binding affinity" refers to intrinsic binding affinity which reflects a 1 : 1 interaction between members of a binding pair (e.g., antibody and antigen). The affinity of a molecule for its binding partner can be generally represented by the dissociation constant (Ko). Affinity can be measured by common methods known in the art, including those described herein.
The term “KD” as used herein refers to the constant of dissociation which is obtained from the ratio of Krf to Ka (i.e. Krf/ Ka) and is expressed as a molar concentration (M). Kd and Ka refer to the dissociation rate and association rate, respectively, of a particular antigen-antibody interaction. KD values for antibodies can be determined using methods well established in the art. As used herein, the term “low affinity” refers to KD of 100 nM or more.
As used herein, the term” moderate affinity” refers to KD ranging from 10nM to 100nM.
As used herein, the term “high affinity” refers to KD of 1 to 10nM.
As used herein, the term “very high affinity” refers to KD of 1 nM or less.
The term “EC50,” as used herein, refers to the concentration of an antibody or an antigen-binding protein/portion thereof, which induces a response, either in an in vivo or an in vitro assay, which is 50% of the maximal response (i.e., halfway between the maximal response and the baseline).
The term “mu Itispecific” or “multi-specific antibody” as employed herein refers to an antibody as described herein which has at least two binding domains, i.e. two or more binding domains, for example two or three binding domains, wherein the at least two binding domains independently bind two different antigens or too different epitopes on the same antigen. Multi-specific antibodies are generally monovalent for each specificity (antigen). Multi-specific antibodies described herein encompass monovalent and multivalent, e.g. bivalent, tri valent, tetravalent multi-specific antibodies.
The term “bispecific" or “bispecific antibody” as employed herein refers to an antibody with two antigen specificities or an antibody that has the ability to simultaneously bind to two target antigens/sites.
As used herein, a “bispecific T cell engager” (BiTE) refers to a class of artificial bispecific monoclonal antibodies that direct a host’s immune system, such as the T cells’ cytotoxic activity against target cells (such as cancer cells). BiTEs are fusion proteins consisting of two single-chain variable fragments (scFvs) of different antibodies, or amino acid sequences from four different genes, on a single peptide chain of about 55 kDa. One of the scFvs binds to an immune cell (such as a T cell via the CD3 receptor), and the other to target of interest (e.g., a tumor cell via a tumor specific molecule). Like other bispecific antibodies, BiTEs form a link between an immune cell (e.g., a T cell) and a target cell (such as a tumor cell). This causes the immune cell (e.g., T cell) to exert cytotoxic activity on tumor cells. For example, if the immune cell is a T cell, the T cell would exert cytotoxic activity by producing proteins like perforin and granzymes that enter tumor cells and initiate the cell’s apoptosis.
The term “immune cell” refers to a type of specialized cell that plays a crucial role in the body's defense against infections and foreign substances. They are a part of the immune system, which is responsible for identifying and eliminating harmful pathogens, such as bacteria, viruses, and parasites, as well as abnormal or cancerous cells. As used herein, an ‘immune cell’ refers to any cell of the immune system, including but not limited to T-cells, helper T-cells, B-cells, natural killer (NK) cells, dendritic cells (DC), granulocytes (such as basophils, eosinophils, neutrophils), mast cells, monocytes, and macrophages.
As used herein, a “nanobody with a heavy chain only” refers to nanobody-based heavy chain antibody. A heavy-chain antibody is an antibody which consists of two heavy chains and lacks the two light chains usually found in antibodies.
As described herein, a "vector" is any molecule or composition that has the ability to carry a nucleic acid sequence into a suitable host cell where e.g., synthesis of the encoded polypeptide can take place. Typically, and preferably, a vector is a nucleic acid that has been engineered, using recombinant DNA techniques that are known in the art, to incorporate a desired nucleic acid sequence (e.g., a nucleic acid of the present disclosure). Expression vectors typically contain one or more of the following components (if they are not already provided by the nucleic acid molecules): a promoter, one or more enhancer sequences, an origin of replication, a transcriptional termination sequence, a complete intron sequence containing a donor and acceptor splice site, a leader sequence for secretion, a ribosome binding site, a polyadenylation sequence, a polylinker region for inserting the nucleic acid encoding the polypeptide to be expressed, and a selectable marker element.
Vectors are typically selected to be functional in the host cell in which the vector will be used (the vector is compatible with the host cell machinery such that amplification of the gene and/or expression of the gene can occur. The vector as described herein may be an expression vector and/or a cloning vector.
The term “host cell,” as used herein, is intended to refer to a cell into which an expression vector has been introduced. It should be understood that such terms are intended to refer not only to the particular subject cell but to the progeny of such a cell. Because certain modifications may occur in succeeding generations due to either mutation or environmental influences, such progeny may not, in fact, be identical to the parent cell, but are still included within the scope of the term “host cell” as used herein.
The terms “treating", "treat" and “therapy”, and synonyms thereof refer to both therapeutic treatment and prophylactic or preventative measures, wherein the object is to prevent or slow down (lessen) a medical condition, which includes but is not limited to diseases, symptoms and disorders. A medical condition also includes a body’s response to a disease or disorder, e.g. inflammation. Those in need of such treatment include those already with a medical condition as well as those prone to getting the medical condition or those in whom a medical condition is to be prevented.
The term “subject” as used herein includes patients and non-patients. The term “patient” refers to individuals suffering or are likely to suffer from a medical condition, while “non-patients” refer to individuals not suffering and are likely to not suffer from the medical condition. “Non-patients” include healthy individuals, non-diseased individuals
and/or an individual free from the medical condition. The term “subject” includes humans and animals. Animals may include, but is not limited to, mammals (for example nonhuman primates, canine, murine and the like), and the like. “Murine” refers to any mammal from the family Muridae and / or Leporidae, such as mouse, rat, rabbit, and the like.
The term “preventing” and/or “reducing the severity of symptoms” as used herein refers to process of delaying the onset, reducing the severity of symptoms, reducing and/or preventing weight loss, preventing death, inhibiting deterioration, inhibiting further deterioration, and/or ameliorating at least one sign or symptom of a disease.
The term "and/or", e.g., "X and/or Y" is understood to mean either "X and Y" or "X or Y" and should be taken to provide explicit support for both meanings or for either meaning.
Further, in the description herein, the word “substantially” whenever used is understood to include, but not restricted to, "entirely" or “completely” and the like. In addition, terms such as "comprising", "comprise", and the like whenever used, are intended to be non-restricting descriptive language in that they broadly include elements/components recited after such terms, in addition to other components not explicitly recited. For example, when “comprising” is used, reference to a “one” feature is also intended to be a reference to “at least one” of that feature. Terms such as “consisting”, “consist”, and the like, may in the appropriate context, be considered as a subset of terms such as "comprising", "comprise", and the like. Therefore, in embodiments disclosed herein using the terms such as "comprising", "comprise", and the like, it will be appreciated that these embodiments provide teaching for corresponding embodiments using terms such as “consisting”, “consist”, and the like. Further, terms such as "about", "approximately" and the like whenever used, typically means a reasonable variation, for example a variation of +/- 5% of the disclosed value, or a variance of 4% of the disclosed value, or a variance of 3% of the disclosed value, a variance of 2% of the disclosed value or a variance of 1% of the disclosed value.
Furthermore, in the description herein, certain values may be disclosed in a range. The values showing the end points of a range are intended to illustrate a preferred range. Whenever a range has been described, it is intended that the range covers and teaches all possible sub-ranges as well as individual numerical values within that range. That is, the end points of a range should not be interpreted as inflexible limitations. For
example, a description of a range of 1% to 5% is intended to have specifically disclosed sub-ranges 1% to 2%, 1% to 3%, 1% to 4%, 2% to 3% etc., as well as individually, values within that range such as 1 %, 2%, 3%, 4% and 5%. It is to be appreciated that the individual numerical values within the range also include integers, fractions and decimals. Furthermore, whenever a range has been described, it is also intended that the range covers and teaches values of up to 2 additional decimal places or significant figures (where appropriate) from the shown numerical end points. For example, a description of a range of 1% to 5% is intended to have specifically disclosed the ranges 1 .00% to 5.00% and also 1 .0% to 5.0% and all their intermediate values (such as 1 .01%, 1 .02% ... 4.98%, 4.99%, 5.00% and 1.1%, 1 .2% ... 4.8%, 4.9%, 5.0% etc.,) spanning the ranges. The intention of the above specific disclosure is applicable to any depth/breadth of a range.
“At least 95% identical” as employed herein is intended to refer to an amino acid sequence which over its full length is 95% identical or more to a reference sequence, such as 96, 97, 98 or 99% identical. Software programmes can be employed to calculate percentage identity.
Additionally, when describing some embodiments, the disclosure may have disclosed a method and/or process as a particular sequence of steps. However, unless otherwise required, it will be appreciated that the method or process should not be limited to the particular sequence of steps disclosed. Other sequences of steps may be possible. The particular order of the steps disclosed herein should not be construed as undue limitations. Unless otherwise required, a method and/or process disclosed herein should not be limited to the steps being carried out in the order written. The sequence of steps may be varied and still remain within the scope of the disclosure.
Furthermore, it will be appreciated that while the present disclosure provides embodiments having one or more of the features/characteristics discussed herein, one or more of these features/characteristics may also be disclaimed in other alternative embodiments and the present disclosure provides support for such disclaimers and these associated alternative embodiments.
DESCRIPTION OF EMBODIMENTS
It will be appreciated by a person skilled in the art that other variations and/or modifications may be made to the embodiments disclosed herein without departing
from the spirit or scope of the disclosure as broadly described. For example, in the description herein, features of different exemplary embodiments may be mixed, combined, interchanged, incorporated, adopted, modified, included etc. or the like across different exemplary embodiments. The present embodiments are, therefore, to be considered in all respects to be illustrative and not restrictive.
In one aspect, there is provided an antigen binding protein, an antigen binding variant, and/or an antigen binding fragment thereof that binds specifically to Epithelial Cellular Adhesion Molecule (EpCAM).
In one embodiment, the antigen binding protein, variant or fragment thereof is a monoclonal antibody.
In one embodiment, the antigen binding protein or variant thereof is a full length antibody.
In one embodiment, the antigen binding fragment thereof is selected from the group comprising: an Fab, a modified Fab, an Fab', a modified Fab', an F(ab')2, an Fv, a single domain antibody, a VHH, an scFv, an Fv, an bivalent antibody, a trivalent antibody, a tetra-valent antibody, a Bis-scFv, a diabody, a triabody, a tetrabody, an epitope-binding fragment, and the like.
In one embodiment, the antigen binding protein, variant or fragment thereof is an IgG, IgA, IgD, IgE, or IgM antibody.
In one embodiment, the antigen binding protein, variant or fragment thereof is a chimeric antibody, a human antibody / humanized antibody, recombinant humanized antibody, an animal-derived antibody (such as llama antibody) or the like.
In one embodiment, the antigen binding protein, variant or fragment thereof is a human antibody. In one embodiment, the antigen binding protein, variant or fragment thereof is a llama antibody. In one embodiment, the antigen binding protein, variant or fragment thereof is a humanized llama antibody.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises one or more amino acid sequences selected from the group consisting of SEQ ID NOs: 1 to 37.
In one embodiment, the antigen binding protein, variant or fragment thereof is encoded by one or more nucleic acid sequences selected from the group consisting of SEQ ID NOs: 38 to 74.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and a light chain variable region encoded by nucleic acid sequences selected from the group consisting of:
(i) a heavy chain variable region comprising: (1 B6 and 1 C1 ) a CDR-H1 comprising GGAGGCACCTTCAGCAGCTATGCT (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 39), and a CDR-H3 comprising GCGAGATCGTTGGGTGGGAGATTTCGCTAC (SEQ ID NO: 40); and a light chain variable region comprising: a CDR-L1 comprising
CAGAGCCTGCTGCATAGTAATGGATACAACTAT (SEQ ID NO: 46), a CDR-L2 comprising TTGGGTTCT (SEQ ID NO: 47), and a CDR-L3 comprising ATGCAAGCTCTACAAACTCCGTACACT (SEQ ID NO: 48)
(ii) a heavy chain variable region comprising: (1 C11 ) a CDR-H1 comprising GGAGGCACCTTCAGCAGCTATGCT (SEQ ID NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID NO: 39), and a CDR-H3 comprising GCGAGATCGTTGGGTGGGAGATTTCGCTAC (SEQ ID NO: 40); and a light chain variable region comprising: a CDR-L1 comprising
CAGAGCCTCCTGCATAGTAATGGATACAACTAT (SEQ ID NO: 46), a CDR-L2 comprising TTGGGTTCT (SEQ ID NO: 47), and a CDR-L3 comprising ATGCAAGGTCTACAAAGTCCCTGGACG (SEQ ID NO: 52)
(iii) a heavy chain variable region comprising: (1 D4) a CDR-H1 comprising GGAGGCACCTTCAGCAGCTATGCT (SEQ ID NO: 38),
a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID
NO: 39), and a CDR-H3 comprising GCGAGATCGTTGGGTGGGAGATTTCGCTAC
(SEQ ID NO: 40); and a light chain variable region comprising: a CDR-L1 comprising
CAGAGCCTCCTGCATAGTAATAGATACAACTAT (SEQ ID NO: 54), a CDR-L2 comprising TTGGGTTCT (SEQ ID NO: 47), and a CDR-L3 comprising ATGCAAGCTCTACAAACTCGGTACACT (SEQ
ID NO: 48)
(iv) a heavy chain variable region comprising: (1 H6) a CDR-H1 comprising GGAGGCACCTTCAGCAGCTATGCT (SEQ ID
NO: 38), a CDR-H2 comprising ATCATCCCTATCTTTGGTACAGCA (SEQ ID
NO: 39), and a CDR-H3 comprising GCGAGATCGTTGGGTGGGAGATTTCGCTAC
(SEQ ID NO: 40); and a light chain variable region comprising: a CDR-L1 comprising
CAGAGCCTCCTGCATAGTAATGGATACAACTAT (SEQ ID NO: 46), a CDR-L2 comprising TTGGGTTCT (SEQ ID NO: 47), and a CDR-L3 comprising ATGCAAGGTCTACAGACTCCGTACACT (SEQ
ID NO: 60); and
(v) a heavy chain variable region comprising: (1 E4) a CDR-H1 comprising GGGGACAGTATCTCTAGTAACAGTGTTGCT
(SEQ ID NO: 42), a CDR-H2 comprising ACATACTACAGGTCCAAGTGGTACAGT (SEQ
ID NO: 43), and a CDR-H3 comprising
GCAAGAGAAGTTGAGGGCAGCAGCTATGATGCTTTTGATATC (SEQ
ID NO: 44); and a light chain variable region comprising: (1 E4) a CDR-L1 comprising CAGAGTATTAGCGACTTT (SEQ ID NO: 56),
a CDR-L2 comprising GCTGCATCG (SEQ ID NO: 57), and a CDR-L3 comprising TTACATTATGCCCGACACT (SEQ ID NO: 58) or fragment or variation or sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and a light chain variable region encoded by nucleic acid sequences selected from the group consisting of:
(i) a heavy chain variable region comprising: (1 A5-VHH, 2C4-VHH, 2D10-VHH and hu2C4-VHH) a CDR-H1 comprising GGAAGCATCTTCAGTGGCAATGAC (SEQ ID
NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO:
63), and a CDR-H3 comprising
ACAAACGGAAGATGGTCAGGCGATACTTACTATGCCCATCAC (SEQ
ID NO: 64)
(ii) a heavy chain variable region comprising: (1 B8-VHH) a CDR-H1 comprising GGAAGCTCCGAAAGATTCACATCA (SEQ ID
NO: 66), a CDR-H2 comprising ATTACTAATGGTGGTAGCACA (SEQ ID NO:
67), and a CDR-H3 comprising ATGGCGGGTACGTCC (SEQ ID NO: 68); and
(iii) a heavy chain variable region comprising: (2B7-VHH) a CDR-H1 comprising GGAAGCATCTTCAGTGGCAATGAC (SEQ ID
NO: 62), a CDR-H2 comprising ATTACTAGCGGTGGTAGTACA (SEQ ID NO:
63), and a CDR-H3 comprising
ACAAACGGAAGATGGTCAGGCGATACTTACTATGCCCATCTC (SEQ
ID NO: 70) or fragment or variation or sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a heavy chain variable domain encoded by the nucleotide sequence comprising
(i) GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCT CGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGC TATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGA GGGATCATCCCTATCTTTGGTACAGCAAACTACGCACAGAACTTCCAGGG CAGAGTCACCATGACCGCAGACACCTCCATAAGCACAGCCTACATGGAGC TGAGCAGCCTGAGATCTGAGGACACGGCCGTGTATTACTGTGCGAGATCG TTGGGTGGGAGATTTCGCTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 - for clones 1 B6, 101 , 1C11 , 1 D4, 1 H6), or
(ii) CAGGTACAGCTGCAGCAGTCAGGTCCAGGGCTGGTGAAGCCCTCGCAGA CGCTCTCACTGAGCTGTGCCATCTGCGGGGACAGTATCTCTAGTAACAGT GTTGCTTGGAACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCT GGGAAGGACATACTACAGGTCCAAGTGGTACAGTGATTATGCAATATCTG TGAAAGGTCGATTAGACATCAACCCAGACACATCCAAGAACCAGTTCTCCC TGCAGCTGAAGTCTGTGAGTCCGGAGGACACGGCTGTGTATTATTGTGCA AGAGAAGTTGAGGGCAGCAGCTATGATGCTTTTGATATCTGGGGCCAAG GGACAATG (SEQ ID NO: 45 - clone 1 E4), or a sequence at least 60% identical thereto and/or having 10-20 nucleic acid substitutions.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a light chain variable domain encoded by the nucleotide sequence comprising
(i) GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGA GCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATG GATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAG CTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTT CAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGG AGGGTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCG TACACTTTTGGCCAGGGGACCAAG (SEQ ID NO: 49 - clone 1 B6 and 1C1), or
(ii) GAAATTGTGCTGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGA GCGGGCCTGCATCTCCTGGAGGTGTAGTCAGAGCCTCCTGCATAGTAATG GATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTGTCCACAG
CTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTT CAGTGGCAGTGGATCAGGTACAGATTTTACACTGAAAATAAGCAGAGTGG
AGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGGTCTACAAAGTCCC TGGACGTTCGGCCAAGGGACCAAG (SEQ ID NO: 53 - clone 1011), or
(ill) GATGTTGTG ATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGG AGA GTCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATA GATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAG CTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTT CAGTGGCAGTGGATCAGGCACAGATTTTACACTGAAAATCAGCAGAGTGG AGGCTGAGGATGTTGGGGTTTATTACTGCATGCAAGCTCTACAAACTCCG TACACTTTTGGCCAGGGGACCAAG (SEQ ID NO: 55 - clone 1 D4), or
( i v) GACATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGA CAGAGTCACCATCACTTGCCGGGCAAGTCAGAGTATTAGCGACTTTTTAA ATTGGTACCAGCAGAAACCAGGTAAAGCCCCGAAGCTCCTGATCTATGCT GCATCGAGTTTACAAACTGGGGTCCCCTCAAGATTCGGTGGCAGTGGATC TGGGACAGAATTCACTCTCACCATAAGCAGTCTACAACCTGAAGATTTGGG AACTTATTACTGTCAACAGAGTTACATTATGCCCGACACTTTTGGCCAGG GGACGAAA (SEQ ID NO: 59 - clone 1 E4), or
(v) GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGA GCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATG GATACAACTATTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAG CTCCTGATCTATTTGGGTTCTAATCGGGCCTCCGGGGTCCCTGACAGGTT CAGTGGCAGTGGATCAGGCACAGATTTTACACTGCAAATCAGCAGAGTGG
AGGCTGAGGATGCTGGGGTTTATTACTGCATGCAAGGTCTACAGACTCCG TACACTTTTGGCCAGGGGACCAAG (SEQ ID NO: 61 - clone 1 H6), or a sequence at least 60% identical thereto and/or having 10-20 nucleic acid substitutions.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a single domain heavy chain variable domain encoded by the nucleotide sequence comprising:
(i) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGGAGGGT CTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGTGGCAATGAC ATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGCGCGAGTTGGTCGCG
GTTATTACTAGCGGTGGTAGTACACACTATGCAGACTCCGTGAAGGGCCG
ATTCACCATCTCCAGAGACAATGCCCAGAAGACCGTATATCTGCAAACGAA CGACTTGAAACCTGAGGACACGGCCGTGTATTACTGCACAAACGGAAGAT GGTCAGGCGATACTTACTATGCCCATCACTGGGGCCAGGGGACCCAG
(SEQ ID NO: 65 - clone 1A5),
(ii) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGGGGGG
TCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCTCCGAAAGATTCACATC AGTGGCCTGGTACCGCCAGGCTCCAGGAAAGGAGCGCGAGTTGGTCGCA TTTATTACTAATGGTGGTAGCACAAGATATACAGACCCCGTGAAGGGGCG
ATTCACCATCTCCAGAGACAACGCCAAGAACACGGTGTATCTGCAAATGAA CAGCCTGAAAGCTGAGGACACGGCCGTCTATTATTGTATGGCGGGTACGT CCTGGGGCCAGGGGACCCAG (SEQ ID NO: 69 - clone 1 B8),
(ill) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGGAGGGT
CTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGTGGCAATGAC ATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGCGCGAGTTGGTCGCG GTTATTACTAGCGGTGGTAGTACACACTATGCAGACTCCGTGAAGGGCCG
ATTGACCATCTCCAGAGAGAATGCCCAGAAGACCGTATATCTGCAAACGAA CGACCTGAAACCTGAGGACACGGCCGTGTATTACTGCACAAACGGAAGA TGGTCAGGCGATACTTACTATGCCCATCTCTGGGGCCAGGGGACCCAG
(SEQ ID NO: 71 - clone 2B7),
(iv) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGGGGGG
TCTCTGAGAGTCTCCTGTGCAGACTGTGGAAGCATCTTCAGTGGCAATGA CATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGCGCGAGTTGGTCGC GGTTATTACTAGCGGTGGTAGTACACACTATGCAGACTCCGTGAAGGGCC
GATTCACCATCTCCAGAGACAATGCCCAGAAGACCGTATATCTGCAAACGA ACGACCTGAAACCTGAGGACACGGCCGTGTATTACTGCACAAACGGAAG ATGGTCAGGCGATACTTACTATGCCCATCACTGGGGCCAGGGGACCCAG
(SEQ ID NO: 72 - clone 2C4),
(v) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGGGGACT
CTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGTGGCAATGAC ATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGCGCGAGTTGGTCGCG GTTATTACTAGCGGTGGTAGTACAGAGTATGGAGACTGCGTGAAGGGGCG
CGACCTGAAACCTGAGGACACGGCCGTGTATTACTGCACAAACGGAAGA TGGTCAGGCGATACTTACTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 73 - clone 2D10), or
(vi) CAGGTGCAGCTGGTGGAGTCTGGGGGAGGATTGGTGCAGGCTGGGGGC TCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCATCTTCAGTGGCAATGA CATGTCCTGGTACCGCCAGGCTCCAGGGAAGGGACTCGAGTTGGTCGCG GTTATTACTAGCGGTGGTAGTACATACTATGCAGACTCCGTGAAGGGCCG ATTCACCATCTCCAGAGACAATTCCaAGAAcACCcTATATCTGCAAATGAAC AGCCTGAGAGGTGAGGACACGGCCGTGTATTACTGCACAAACGGAAGAT GGTCAGGCGATACTTACTATGCCCATCACTGGGGCCAGGGGACCCTG (SEQ ID NO: 74 - clone hu2C4-VHH) or a sequence at least 60% identical thereto and/or having 10-20 nucleic acid substitutions.
In one embodiment, the antigen binding protein, variant or fragment thereof comprises a light chain constant domain encoded by the nucleotide sequence comprising
CGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCA GTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCC CAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTA ACTCCCAGGAGAGTGTCGCAGAGCAGGACAGCAAGGACAGCACCTACAG CGTCAGCAGCACCCTGACGCTGAGCAAAGCAGACTACGAGAAACACAAAC TCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAG AGCTTCAACAGGGGAGAGTGT (SEQ ID NO: 50 - clone 1 B6 - light chain constant domain), or CGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCA GTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCC CAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTA ACTCCCAGGAGAGTGTCACAGAGCAGGACAGCAAGGACAGCACCTACAG CCTCAGCAGCACCCTGACGCTGAGCAAAGCAGACTACGAGAAACACAAAG TCTACGCCTGCGAAGTCACCCATCAGGGCCTGAGCTCGCCCGTCACAAAG AGCTTCAGCAGGGGAGAGTGT (SEQ ID NO: 51 - clone 1 C1 - light chain constant domain), or
a sequence at least 60% identical thereto and/or having 10-20 nucleic acid substitutions.
In some embodiments, an "antibody variant" refers to an antibody or antigenbinding fragment thereof comprising a VH and/or a VL wherein the non-CDR regions of the antibody or antigen-binding fragment thereof has at least about 85%, 90%, 95%, 96%, 97%, 98%, or 99% amino acid sequence identity, to an antibody described herein.
In one embodiment, the antigen binding protein is an antibody. In some embodiments, the antigen binding protein may include an isolated antibody.
In some embodiments, the antigen binding protein comprises a sequence that is at least 60% identical to any one of the sequences disclosed herein. For example, the antigen binding protein may comprise a sequence that is at least about 60%, at least about 61 %, at least about 62%, at least about 63%, at least about 64%, at least about 65%, at least about 66%, at least about 67%, at least about 68%, at least about 69%, at least about 70%, at least about 71 %, at least about 72%, at least about 73%, at least about 74%, at least about 75%, at least about 76%, at least about 77%, at least about 78%, at least about 79%, at least about 80%, at least about 81%, at least about 82%, at least about 83%, at least about 84%, at least about 85%, at least about 86%, at least about 87%, at least about 88%, at least about 89%, at least about 90%, at least about 91%, at least about 92%, at least about 93%, at least about 94%, at least about 95%, at least about 96%, at least about 97%, at least about 98%, at least about 99%, or 100% identical to any of the sequences disclosed herein (e.g. about 60%, or about 61%, or about 62%, or about 63%, or about 64%, or about 65%, or about 66%, or about 67%, or about 68%, or about 69%, or about 70%, or about 71%, or about 72%, or about 73%, or about 74%, or about 75%, or about 76%, or about 77%, or about 78%, or about 79%, or about 80%, or about 81%, or about 82%, or about 83%, or about 84%, or about 85%, or about 86%, or about 87%, or about 88%, or about 89%, or about 90%, or about 91%, or about 92%, or about 93%, or about 94%, or about 95%, or about 96%, or about 97%, or about 98%, about 99% or about 100% sequence identity to any one of the sequences disclosed herein. The percentage sequence identity can be determined using methods known in the art, for example using programs such as BLAST, NBLAST, XBLAST, and the like.
In some embodiments, the antigen binding protein comprises a sequence or an amino acid region or is encoded by a nucleotide region that differs by about one, about
two, about three, about four, about five, about six, about seven, about eight, about nine, about ten or more amino acids or nucleobase with the sequence as disclosed herein.
In some embodiments, the antigen binding protein comprises an amino acid sequence having one or more amino acid mutations with respect to any one of the sequences disclosed herein. In some examples, the antigen binding protein comprises an amino acid sequence having one, or two, or three, or four, or five, or six, or seen, or eight, or nine, or ten, or fifteen, or twenty amino acid mutations with respect to any one of the sequences disclosed herein. In some examples, the one or more amino acid mutations may be independently selected from substitutions, insertions, deletions, and truncations.
In some embodiments, the amino acid mutations are amino acid substitutions, and may include conservative and/or non-conservative substitutions.
In various embodiments, the substitution replaces the amino acids with natural amino acids, such as, but is not limited to, alanine, arginine, asparagine, aspartate, cysteine, glutamine, glutamate, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine. In various embodiments, the substitution does not include replacement with cysteine. Thus, in various embodiments, the substitution replaces the amino acids with natural amino acids, such as, but is not limited to, alanine, arginine, asparagine, aspartate, glutamine, glutamate, glycine, histidine, isoleucine, leucine, lysine, methionine, phenylalanine, proline, serine, threonine, tryptophan, tyrosine, and valine.
In various embodiments, the substitution may be a conservative substitution that substitute one for another of similar properties. For example, substitution of one amino acid with another from the same group. In various embodiments, the substitution may include substitution with an amino acid with different properties. In various embodiments, the substitution is made without affecting the biological activity of the antigen binding protein, variant or fragment thereof as described herein. In various embodiments, the substitution increases binding affinity to EpCAM.
In some embodiments, the substitutions may also include non-classical amino acids. Illustrative non-classical amino acids include, but are not limited to, selenocysteine, pyrrolysine, N-formylmethionine p-alanine, GABA and 5-Aminolevulinic acid, 4-aminobenzoic acid (PABA), D-isomers of the common amino acids, 2,4- diaminobutyric acid, a-amino isobutyric acid, 4-aminobutyric acid, Abu, 2-amino butyric
acid, y-Abu, s-Ahx, 6-amino hexanoic acid, Aib, 2-amino isobutyric acid, 3-amino propionic acid, ornithine, norleucine, norvaline, hydroxyproline, sarcosme, citrulline, homocitrulline, cysteic acid, t-butylglycine, t-butylalanine, phenylglycine, cyclohexylalanine, p-alanine, fluoro-amino acids, designer amino acids such as p methyl amino acids, C a-methyl amino acids, N a-methyl amino acids, and amino acid analogs in general.
In some embodiments, the amino acid mutation may be in the CDRs of the antigen binding protein (e.g., the CDR1 , CDR2 or CDR3 regions). In another example, amino acid alteration may be in the framework regions (FRs) of the antigen binding protein (e.g., the FR1 , FR2, FR3, or FR4 regions).
Modification of the amino acid sequences may be achieved using any known technique in the art e.g., site-directed mutagenesis or PCR based mutagenesis.
In some embodiments, the mutations do not substantially reduce the antigen binding protein’s capability to specifically bind to a target. In some examples, the mutations do not substantially reduce the antigen binding protein’s capability to specifically bind to a target and without functionally modulating (e.g., partially or fully neutralizing) the target.
In one embodiment, the antigen binding protein, variant or fragment thereof binds to EpCAM with low affinity, moderate affinity or high affinity.
In one embodiment, the antigen binding protein, variant or fragment thereof binds to EpCAM with low to moderate affinity (KD ranging from 1 -100nM).
In one embodiment, the antigen binding protein, variant or fragment thereof binds with moderate affinity KD ranging from 10-100nM.
In one embodiment, the antigen binding protein, variant or fragment thereof binds to EpCAM with low affinity.
In some embodiments, the binding affinity of the antigen binding protein of the disclosure for the full-length and/or mature forms and/or isoforms and/or splice variants and/or fragments and/or monomeric and/or dimeric forms and/or any other naturally occurring or synthetic analogs, variants, or mutants (including monomeric and/or dimer forms) of antigen binding protein may be described by the equilibrium dissociation constant (KD). In some examples, the antigen binding protein binds to the full-length and/or mature forms and/or isoforms and/or splice variants and/or fragments and/or any other naturally occurring or synthetic analogs, variants, or mutants (including
monomeric and/or dimeric forms) of antigen binding protein with a K D of less than about 1 |JM, about 900 nM, about 800 nM, about 700 nM, about 600 nM, about 500 nM, about 400 nM, about 300 nM, about 200 nM, about 100 nM, about 90 nM, about 80 nM, about 70 nM, about 60 nM, about 50 nM, about 40 nM, about 30 nM, about 20 nM, about 10 nM, or about 5 nM, or about 1 nM, about 50 pM, about 40 pM, about 30 pM, about 20 pM, about 10 pM, about 5 pM or about 1 pM.
The binding affinities of the presently disclosed antigen binding proteins/fragments thereof were measured via Bio-layer Interferometry (BLI) analysis (results shown in Example 4). Advantageously, all the clones tested exhibited binding affinities to EpCAM at nanomolar scales. Surprisingly, compared to the 2 high affinity clinically tested prior art anti-EpCAM antibodies 3622W94 and ING-1 , the Koff rates of which were 1.8 x 10 s, and 3.2 x 10-5 respectively, the presently disclosed anti-EpCAM lgG1 antibodies had a much slower off-rates (6.134 x 10 '1 to 3.278 x 103) and resulted in much lower binding affinities than 3622W94 and ING-1.
In some embodiments, the antigen binding protein may be a nanobody.
In some examples, the multi-specific antigen binding protein, variant or fragment thereof is a bispecific antibody. In some examples, the multi-specific antigen binding protein may be provided as a nanobody. In some examples, the multi-specific antigen binding protein may be provided as a Fc region.
In some examples, the second antigen binding protein, variant or binding fragment thereof of the immune cell engager binds to the immune marker selected from the group consisting of CD3, NKG2D, CD4, CD8, CD16, and CD64.
In some examples, the multi-specific antigen binding protein, variant or fragment thereof is an inducible bispecific T cell engager. In some examples, the multi-specific antigen binding protein is secreted by the immune cell.
In some examples, the multispecific antigen binding protein is an inducible bispecific T cell engager comprising a Heavy chain antibody variable region (i.e. VHH) and/or a single chain variable fragment (scFv).
In some embodiments, the bispecific T cell engager (BiTE) is a nanobody with a heavy chain only (VHH).
In one embodiment, the bispecific T cell engager (BiTE) binds to two antigens; wherein the first antigen is EpCAM; and wherein the second antigen is an immune cell marker.
In some embodiments, the second antigen is an immune cell marker that is involved in the activation of the immune cell.
In some embodiments, the antigen binding protein binds to EpCAM in solution and / or on the surface of the host cells.
In one embodiment, the second antigen targeted by the bispecific T cell engager (BiTE) is selected from the group comprising CD3, NKG2D, CD28, CD16, and the like.
In one embodiment, the antigen binding protein, variant or fragment thereof binds the bispecific T cell engager (BiTE) targets one or more antigens; wherein the first antigen is EpCAM; and wherein the second antigen is CD3.
In some embodiments, the CD3 may include CD3 , CD3s, CD3y, CD36, and the like.
As shown in the experimental data in FIG. 3A, the Fab region of one arm from each of the six anti-EpCAM human antibody clones (clones 1 B6, 1 C1 , 1 C11 , 1 D4, 1 E4, 1 H6 disclosed herein) was replaced by an anti-CD3 scFv fragment, and knob-in-holes mutations were introduced to facilitate correct heavy-chain pairing and LALA mutations to remove Fey receptor binding.
In one embodiment, the antigen binding protein, variant or fragment thereof is a human anti-EpCAM BiTE (for example clones 1 B6, 1C1 , 1 C11 , 1 D4, 1 E4, 1 H6 as disclosed herein).
Advantageously, as shown in the experimental data of the present disclosure, compared to the benchmark BiTE (anti-EpCAM arm of “MT110” with scFv fragment of anti-CD3 clone Okt3) that show binding EC50 of 0.666 nM, BiTE antibodies using the six presently disclosed anti-EpCAM clones (clone 1B6, 1C1 , 1C11 , 1 D4, 1 E4 and 1 H6) showed much lower absorbance reading at 450nm and higher EC50 values, suggesting lower binding affinities to the antigen (FIG. 3B). All six antibodies bound to EpCAM expressing cell HT-29 (FIG. 3C) and human T cells expressing CD3 (FIG. 3E), with binding EC50 to HT-29 cells being 5-20 times lower than that of the benchmark BiTE (MT110, Solitomab) which is 4.106 pM (FIG. 3G). Unlike the benchmark BiTE which showed 10-20% of non-specific binding to EpCAM negative HeyA8 cells at high concentrations of 0.5, 2, 10 nM (FIG. 3F), the six antibodies did not bind to HeyA8 cells at all concentrations (FIG. 3D) suggesting that these anti-EpCAM BiTE could bind to cell surface antigen in a highly specific manner. All anti-EpCAM BiTE antibodies (clone 1 B6,
1 C1 , 1 C11 , 1 D4 and 1 H6) were able to kill 70-100% of HT-29 cells within 72 hours at a concentration as low as 0.1 nM (FIG. 4B). 1 C1 and 1 H6 BiTE antibodies showed the lowest EC50 values of 18.5 pM and 12.02 pM, respectively; while 1 B6, 1C1 1 , 1 D4, 1 E4 showed low to moderate cell killing efficacy (FIG. 4C).
In some embodiments, the anti-EpCAM antibody is a nanobody with a heavy chain only (VHH). In some embodiments, the nanobody with heavy chain only includes an anti-EpCAM BiTE (such as 1A5-VHH, 1 B8-VHH, 2B7-VHH, 2C4-VHH, 2D10-VHH).
In some embodiments, the anti-EpCAM BiTE may comprise single domain antibody fragments (VHH) against EpCAM that may be fused to another antigen binding protein (such as anti-CD3 T cell agonist antibodies) via a flexible linker.
As shown in the experimental data of the present disclosure, the five disclosed llama anti-EpCAM BiTE clones (1A5-VHH, 1 B8-VHH, 2B7-VHH, 2C4-VHH and 2D10- VHH) show comparable or even lower EC50 values as the benchmark known in the art anti-EpCAM BiTE “MT110” in binding to both mobilized biotinylated EpCAM antigen (FIG. 6B) and EpCAM expressing cells (FIG. 6F), suggesting high binding affinities to the antigen. The four clones (1A5-VHH, 2B7-VHH, 2C4-VHH and 2D10-VHH) all bound strongly to EpCAM expressing cell HT-29 as well as human T cells (CD3 positive) (FIG. 6E). The binding EC50 to HT-29 cells range from 10-20 pM and binding specificity was superior as none of them showed binding to EpCAM negative, CD negative HeyA8 cells even at the highest concentration of 10nM (FIG. 6D). The four anti-EpCAM VHH BiTE antibodies (1A5-VHH, 2B7-VHH, 2C4-VHH and 2D10-VHH) were able to kill 90-100% of EpCAM positive HT-29 (FIG. 7A), HepG2 (FIG. 7B), and Hep3B (FIG. 7C) within 96 hours at concentrations as low as 10 pM but spared EpCAM negative cell HeyA8.
Without wishing to be bound by theory, the antigen binding fragments of VHH antibodies are advantageously much smaller and have a higher tissue penetration than conventional antibodies, and possess superior properties including high solubility, stability and resistance to heat-denaturation.
In one embodiment, the antigen binding protein, variant or fragment thereof is a humanized anti-EpCAM BiTE (e.g. hu2C4-VHH as disclosed herein).
As shown in the experimental results of the present disclosure, humanized clone hu2C4-VHH was constructed by pairing EpCAM BiTE antibodies with well-characterized anti-CD3 Okt3. Humanization resulted in 10 times reduction in binding affinity to the antigen protein (FIG. 8A) and about 2.5 times weaker cell binding (FIG. 8B and FIG. 8E).
The binding to the CD3 arm was not affected by the VHH arm humanization (FIG. 8D), while hu2C4-VHH/Okt3 showed high binding specificity as it didn’t bind to EpCAM negative HeyA8 cells, similar to its parental clone (FIG. 8C). hu2C4-VHH/Okt3 EC50 still falls within the range of pM (FIG. 9A, FIG. 9C). Similar to the 2C4-VHH/Okt3 BiTE, hu2C4-VHH/Okt3 also did not kill EpCAM negative HeyA8 cells (FIG. 9B) nor did it induce interferon y (FIG. 9D) or IL-2 (FIG. 9E) secretion upon co-culture as otherwise shown in the case of the benchmark BiTE (MT110).
In one embodiment, the antigen binding protein, variant or fragment thereof further comprises an immunoglobulin Fc fragment (region/domain), a protein capable of extending the half-life of the recombinant/fusion polypeptide (such as albumin, human albumin, and the like), linkers capable of enhancing binding valency (for example a rigid linker or a flexible linker, such as a GGGGS repeat), or combinations thereof, for example wherein the immunoglobulin Fc fragment is an IgG Fc fragment, such as a human IgG Fc fragment.
In various embodiments, the immunoglobulin fragment may include but is not limited to a Fc region/domain, one or more CH regions/domains, a Fab, a Fab’, a F(ab’)2, a single chain Fv (ScFv) and/or Fv fragments, hinge regions/domain, as well as fragments or portions thereof.
In some embodiments, the antigen binding protein, variant or fragment thereof may also contain portions of immunoglobulin molecules or antibodies, such as including, but not limited to, all or portions of a constant heavy chain, a variable heavy chain, a constant light chain, a variable light chain, a hinge region, and/or an Fc domain of a Ig, as well as variants thereof. For example, a recombinant/fusion polypeptide as described herein may be combined with portions of a human IgG. In various embodiments, the type of immunoglobulin may include one or more type such as, but is not limited to, IgG, Ig E, IgM, IgD, IgA, and IgY. In various embodiments, the type of immunoglobulin may be an immunoglobulin of class lgG1 , lgG2, lgG3, lgG4, lgA1 , lgA2, or subclass thereof.
In one embodiment, the immunoglobulin fragment is an IgG Fc fragment.
In another aspect, there is provided a polynucleotide encoding the immune cell and/or the polypeptide and/or multispecific antigen binding protein as described herein.
In some examples, the sequence encoding the immune cell engager encodes for a multi-specific antigen binding protein. In some examples, the multi-specific antigen binding protein is a bi-specific antibody. In some examples, the sequence encoding the
immune cell engager encodes for an antigen binding protein capable of binding EpCAM (anti-EpCAM antigen binding protein), or fragment, or variant thereof, and an anti- immune cell antigen binding protein.
In some examples, the sequence encoding the immune cell engager encodes for a single chain variable fragment (scFv) or a single variable domain located on a heavy chain (VHH).
In some examples, the sequence encoding the immune cell engager encodes for an anti-EpCAM scFv or an anti-EpCAM VHH.
In some examples, the sequence encoding the immune cell engager encodes for an anti-immune cell antigen binding protein that binds to an immune cell activation marker. In some examples, the immune cell activation marker may include but is not limited to CD3, NKG2D, CD4, CD8, CD16, CD64, and the like.
In some examples, the immune activation marker may be in VHH form or scFv form. In some examples, the sequence encoding the immune cell engager encodes for an antigen binding protein capable of binding CD3 (anti-CD3 antigen binding protein), or fragment, or variant thereof. In some examples, the sequence encoding the immune cell engager encodes for a single chain variable fragment (scFv) or a VHH form. In some examples, the sequence encoding the immune cell engager encodes for an anti-CD3 scFv or an anti-CD3 single domain VHH.
In some examples, the immune cell engager may include a His-tag.
In some examples, the immune cell engager comprises an anti-EpCAM antigen binding protein, a linker, an anti-CD3 scFv or an anti-CD3 single domain VHH, and a His- tag. In some examples, the linker is a cleavable linker, which may include but is not limited to, P2A, T2A, F2A, and the like.
In some examples, the polynucleotide comprises the sequence encoding an immune cell engager is a sequence encoding a bispecific T cell engager (BiTE). In some examples, the polynucleotide comprises the sequence encoding BiTE that bi-specifically binds to EpCAM and a T cell. In some examples, the polynucleotide comprises the sequence encoding for an anti-GPC3 scFv CAR with CD3 intracellular domain, and the sequence encoding for a BiTE that binds to EpCAM and a T cell.
In one embodiment, the polynucleotide comprises one or more nucleic acid sequences selected from the group consisting of SEQ ID NOs: 38 to 74.
In some embodiments, the polynucleotide sequence may be at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical to the sequences as disclosed herein.
In one embodiment, the vector is an expression vector.
In some embodiments, the vector is selected from the group consisting of a plasmid, a viral particle, a phage, a baculovirus, a yeast plasmid, a lipid based vehicle, a polymer microsphere, a liposome, and a cell based vehicle, a colloidal gold particle, lipopolysaccharide, polypeptide, polysaccharide, a viral vehicle, an adenovirus, a retrovirus, a lentivirus, an adeno-associated viruses, a herpesvirus, a vaccinia virus, a foamy virus, a cytomegalovirus, a Semliki forest virus, a poxvirus, a pseudorabies virus, an RNA virus vector, a DNA virus vector and a vector derived from a combination of a plasmid and a phage DNA, further optionally wherein said polynucleotide is operatively linked to an expression control sequence(s) to direct peptide synthesis, even further optionally wherein the vector comprises one or more selectable marker genes to provide a phenotypic trait for selection of transformed host cells.
In one embodiment, the vector is selected from the group comprising DNA vector, an RNA vector, a plasmid, a lentiviral vector, an adenoviral vector, an adeno-associated viral vector, and a retroviral vector.
In some embodiments, the vector is a lentiviral vector.
In some embodiments, the host cell comprises cloning or expression vectors as described above and/or nucleic acid sequences encoding for the antigen binding protein, antibodies and binding fragments thereof as described above.
The host cell can be any type of cell capable of being transformed or transfected with the nucleic acid or vector so as to produce an antigen binding protein or binding fragment/protein thereof encoded thereby. The host cell comprising the nucleic acid or vector can be used to produce the antigen binding protein or binding fragment/protein thereof, or a portion thereof (e.g., a heavy chain sequence, or a light chain sequence encoded by the nucleic acid or vector). After introducing the nucleic acid or vector into the cell, the cell is cultured under conditions suitable for expression of the encoded sequence. The antibody, antigen binding protein, or fragment, or portion of the antibody then can be isolated from the cell.
The host cells may be prokaryotic host cells (such as E. coli) or eukaryotic host cells (such as a yeast cell, an insect cell, or a vertebrate cell). The host cell, when
cultured under appropriate conditions, expresses an antibody or binding fragment thereof which can subsequently be collected from the culture medium (if the host cell secretes it into the medium) or directly from the host cell producing it (if it is not secreted). Selection of an appropriate host cell will depend upon various factors, such as desired expression levels, polypeptide modifications that are desirable or necessary for activity, such as glycosylation or phosphorylation, and ease of folding into a biologically active molecule. Selection of the host cell will depend in part on whether the antibody or binding fragment thereof is to be post-transcriptionally modified (e.g., glycosylated and/or phosphorylated). The host cell may comprise a bacterial cell, a yeast cell, an animal cell e.g., a mammalian cell and/or a plant cell.
Suitable mammalian host cells include CHO, myeloma or hybridoma cells. Many are available from the American Type Culture Collection (ATCC), Manassas, Va. Examples include mammalian cells, such as Chinese hamster ovary cells (CHO) (ATCC No. CCL61 ), human embryonic kidney (HEK) 293 or 293T cells (ATCC No. CRL1573), 3T3 cells (ATCC No. CCL92), or PER.C6 cells. Other cell types of use in expressing antibodies include lymphocytic cell lines, e.g., NSO myeloma cells and SP2 cells, COS cells.
In one embodiment, the host cell expresses/secretes the antigen binding protein, variant or fragment thereof as disclosed herein.
In one aspect, there is provided a cell that expresses/secretes an immune cell engager that is specific to EpCAM.
In one embodiment, the cell is a stem cell, for example selected from the group comprising a mesenchymal stem cell, neural stem cell and a pluripotent stem cell, such as an induced pluripotent stem cell (IPSC). Thus, in one embodiment, the stem cell is a mesenchymal stem cell. In one embodiment, the stem cell is a neural stem cell. In one embodiment, the stem cell is a pluripotent stem cell, such as an iPSC.
In one embodiment, the cell is an immune cell.
In one embodiment, the immune cell expresses/secretes an immune cell engager which is specific to EpCAM. In one embodiment, the immune cell engager is selected from the group comprising a T cell engager, an NK cell engager, a monocyte engager and a macrophage engager.
In one embodiment, the immune cell expresses/secretes a bispecific T cell engager (BITE) which is specific to EpCAM.
In one embodiment, the immune cell expresses/secretes a bispecific T cell engager (BiTE), such as an inducible, non-inducible or constitutive expression BiTE comprising the antigen binding protein, variant or fragment thereof as disclosed herein.
Surprisingly, the present inventors have established that immune cells, such as CAR T-cells, are able to secrete EpCAM BiTEs. See Examples 5 to 7. It was not previously known that this was possible. Advantageously, by engineering immune cells to express EpCAM immune engagers, this allows the EpCAM immune engagers to be secreted at the target site (for example at the site of a solid tumour), thereby minimising toxicity and/or side effects.
In some examples, the immune cell may include but is not limited to a macrophage, a dendritic cell, a T cell, a B cell, an eosinophil, a basophil, a neutrophil, a mast cell, a natural killer T cell (NKT cell), natural killer cell (NK cell), a macrophage, a monocyte, and the like. In one embodiment, the immune cell is a NK cell. In one embodiment, the immune cell is a macrophage. In one embodiment, the immune cell is a dendritic cell. In one embodiment, the immune cell is a monocyte.
In one embodiment, the immune cell is a T-cell. In one embodiment, the immune cell is a CAR T-cell, such as an anti-GPC3, anti-HER2 or anti-CD19 CAR T-cell. Thus, in one embodiment, the CAR T-cell is an anti-GPC3 CAR T-cell. In one embodiment, the CAR T-cell is an anti-HER2 CAR T-cell. In one embodiment, the CAR T-cell is an anti- CD19 CAR T-cell. In one embodiment, the immune cell is a CAR T-, CAR NK-, CAR macrophage-, or CAR monocyte-cell,
In some examples, the immune cell may bind to more than one host cell antigen. Therefore, in some examples, the immune cell may further bind to one host cell antigen, two host cell antigens, three host cell antigens, four host cell antigens, and the like.
Without wishing to be bound by theory, while the CAR T cells kill target cells directly, the anti-EpCAM BiTEs exert their cytotoxicity by recruiting the immune cells (such as T cells) nearby. By this approach, bystander T cells are physically directed to the close proximity of tumors and at the same time being activated and help the clearance of tumor cells. By applying local secretion of anti-EpCAM BiTE by CAR T cells, it converts a non-druggable target into a druggable target as it diminishes the on-target, off-tumor toxicity that might be brought by systematic delivery.
As EpCAM is also defined as a cancer stem cell marker expressed on cancer progenitor cells and cancer stem cells, secretion of anti-EpCAM BiTE by CAR T cells will
concomitantly contribute to the prevention of cancer relapse and recurrence by eliminating cancer stem cells and progenitor cells.
In one embodiment, the immune cell expresses an inducible bispecific T cell engager (BITE) comprising a heavy chain variable region that comprises the heavy chain complementarity determining region:
(I) (for clones 1 B6, 1 C1 , 1 C11 , 1 D4, 1 H6) a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1), a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2), and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3), or
(ii) (for clone 1 E4) a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5), a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6), and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7), and
(iii) (for one 1A5-VHH) a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25), a CDR-H2 comprising ITSGGST (SEQ ID NO: 26), and a CDR-H3 comprising TNGRWSGDTYYAHH (SEQ ID NO: 27), or
(iv) (for clones 1 B8-VHH, 2C4-VHH, 2D10-VHH and hu2C4-VHH) a CDR-H1 comprising GSSERFTS (SEQ ID NO: 29), a CDR-H2 comprising ITNGGST (SEQ ID NO: 30), and a CDR-H3 comprising MAGTS (SEQ ID NO: 31), or
(v) (for clone 2B7-VHH) a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25), a CDR-H2 comprising ITSGGST (SEQ ID NO: 26), and a CDR-H3 comprising TNGRWSGDTYYAHL (SEQ ID NO: 33), or or fragment or variation or sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity, and a light chain variable region that comprises the light chain complementarity determining region:
(i) (for clones 1 B6 and 1 C1 ) a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9), a CDR-L2 comprising LGS (SEQ ID NO: 10), and a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11), or
(iii) (for clone 1C11 )
a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9), a CDR-L2 comprising LGS (SEQ ID NO: 10), and a CDR-L3 comprising MQGLQSPWT (SEQ ID NO: 15), or
(iii) (for clone 1 D4) a CDR-L1 comprising QSLLHSNRYNY (SEQ ID NO: 17), a CDR-L2 comprising LGS (SEQ ID NO: 10), and a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11), or
(iv) (for clone 1 E4) a CDR-L1 comprising QSISDF (SEQ ID NO: 19), a CDR-L2 comprising AAS (SEQ ID NO: 20), and a CDR-L3 comprising QQSYIMPDT (SEQ ID NO: 21), or
(v) (for clone 1 H6) a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9), (1 H6) a CDR-L2 comprising LGS (SEQ ID NO: 10), and a CDR-L3 comprising MQGLQTPYT (SEQ ID NO: 23), or fragment or variation or sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity.
In one embodiment, the immune cell expresses an inducible bispecific T cell engager (BiTE) that further binds to an immune cell activator.
In one embodiment, the immune cell expresses an inducible bispecific T cell engager (BiTE) that further binds to CD3.
Also disclosed is a polypeptide comprising a multispecific antigen binding protein. In some examples, the multispecific antigen binding protein is a bi-specific antibody. In some examples, the polypeptide comprises a multispecific antigen binding protein that binds to EpCAM (epithelial cell adhesion molecule) and an immune cell.
In some examples, the multispecific antigen binding protein is a bispecific immune cell engager that is capable of engaging both an antigen and an immune cell.
In some examples, the polypeptide comprises an anti-EpCAM antigen binding protein. In some examples, the polypeptide comprises a single domain anti-EpCAM antibody, optionally an anti-EpCAM H-chain antibody variable region (i.e., VHH).
In some examples, the polypeptide comprises an anti-immune cell antigen binding protein. In some examples, the polypeptide comprises an anti-immune cell antigen binding protein that binds to an immune cell activation marker. In some
examples, the immune cell activation marker is CD3, NKG2D, CD4, CD8, CD16, CD64, and the like. In some examples, the polypeptide binds to CD3. In some examples, the CD3 may include CD3 , CD3E, CD3y, CD36, and the like.
In some examples, the polypeptide comprises an anti-CD3 antigen binding protein. In some examples, the polypeptide comprises a single-chain variable fragment of an anti-CD3 antibody (anti-CD3 scFv).
In some examples, the polypeptide is a bispecific antibody/antigen binding protein. In some examples, the bispecific antibody/antigen binding protein is a bispecific T cell engager (BITE). In some examples, the bispecific T cell engager (BiTE) binds to two antigens, wherein the first antigen is EpCAM and wherein the second antigen is an immune cell marker. In some examples, the second antigen is an immune cell marker that is involved in the activation of the immune cell. In some examples, the second antigen targeted by the bispecific T cell engager (BiTE) may include but is not limited to CD3, NKG2D, CD28, CD16, CD64, and the like. In some examples, the polypeptide comprises a BiTE that bi-specifically binds to EpCAM and a T cell. In some examples, the polypeptide comprises a BiTE that bi-specifically binds to EpCAM and CD3. In some examples, the EpCAM targeted by the BiTE is modified with an anti-EpCAM VHH paired with an anti-CD3 scFv.
In some examples, the anti-EpCAM VHH pairs with an anti-CD3 scFv that may include a clone Okt3 (NbO1 -O13A), or an anti-CD3 clone used by another anti-EpCAM in the art (MT110)(Nb01-013B).
In one aspect, there is provided a method of producing / generating the antigen binding protein, variant or fragment thereof as disclosed herein, comprising
(a) using a library to screen for antigen binding proteins; and
(b) cloning of the antigen binding proteins into an antibody format.
As shown in the experimental data of the present disclosure, 21 clones showing the positive Fab supernatant binding signals to biotinylated hEpCAM-His protein and specific binding to EpCAM positive HT-29 cells were sequence and 6 unique sequences were identified: 1 B6, 1C1 , 1 C11 , 1 D4, 1 E4 and 1 H6. Clones 1 B6, 1 C1 , 1C11 , 1 D4 and 1 H6 share the same sequence in the heavy chain variable region but differ in the light chain sequences of the variable region, except for 1 B6 and 1 C1 that share the same sequences in the light chain variable region but with three amino acid differences in the kappa light chain constant region.
As shown in the experimental data of the present disclosure, 5 unique clones were identified (1A5, 1 B8, 2B7, 2C4 and 2D10) with specific binding to gastric cancer cells (such as AGS cell line).
In one embodiment, the disclosed anti-EpCAM human Fab I VHH clones are used to construct anti-EpCAM BiTE antibodies.
In one aspect, there is provided a method of producing / generating the antigen binding protein, variant or fragment thereof as disclosed herein, comprising expressing the polynucleotide as described herein in a host cell.
In one aspect, there is provided a pharmaceutical composition comprising the antigen binding protein, variant or fragment thereof as disclosed herein.
In one embodiment, the composition is a prophylactic and/or therapeutic composition
In some embodiments, the composition comprises one or more pharmaceutically acceptable agents. Pharmaceutically acceptable agents for use in the present pharmaceutical compositions include carriers, excipients, diluents, antioxidants, preservatives, colouring, flavouring and diluting agents, emulsifying agents, suspending agents, solvents, fillers, bulking agents, buffers, delivery vehicles, tonicity agents, cosolvents, wetting agents, complexing agents, buffering agents, antimicrobials, and surfactants.
Pharmaceutically acceptable salts can be used, for example mineral acid salts, such as hydrochlorides, hydrobromides, phosphates and sulphates, or salts of organic acids, such as acetates, propionates, malonates and benzoates.
Pharmaceutically acceptable carriers in therapeutic compositions may additionally contain liquids such as water, saline, glycerol and ethanol. Additionally, auxiliary substances, such as wetting or emulsifying agents or pH buffering substances, may be present in such compositions. Such carriers enable the pharmaceutical compositions to be formulated as tablets, pills, dragees, capsules, liquids, gels, syrups, slurries and suspensions, for ingestion by the patient. A thorough discussion of pharmaceutically acceptable carriers is available in Remington's Pharmaceutical Sciences (Mack Publishing Company, N.J. 1991 ).
In one embodiment, the composition further comprises a pharmaceutically acceptable excipient, a buffer or carrier.
In one aspect, there is provided a method of preventing and/or reducing the severity of symptoms caused by a disease in a subject in need thereof, the method comprises administering to the subject an antigen binding protein, variant or fragment thereof, or composition as disclosed herein.
In one embodiment, the antigen binding protein, variant or fragment thereof or composition thereof is administered to the subject by mode of administrations known in the art, including but not limited to intramuscularly, subcutaneously, intravenously, intraarterially, intraarticularly, intraperitoneally, intranasally, parenterally, and the like.
In one embodiment, the subject is a mammal, such as a monkey, rabbit, mouse, rat, pig or dog. In one embodiment, the subject is a human.
In one aspect, there is provided a protein, composition, therapy, method of production or method as described herein.
SEQUENCES
CDRs are in bold (CDR1 ) ;in bold and in italics (CDR2). or in bold, in italics and underlined (CDR3}. Highlighted residues/bases show differences between the 1 B6 and 1 C1 light chain constant domains.
1 B6 (SEQ ID NO: 12)
DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGS
1 B6 (light chain constant domain) (SEQ ID NO: 13)
RTVAAPSVFIFPPSDEQLKSGTASWCLLNNFYPREAKVQWKVDNALQSGNSQESVg
EQDSKDSTYSLSSTLTLSKADYEKI IKLYACEVTI IQGLSSPVTKSFNRGEC
1C1 (SEQ ID NO: 12)
DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYZ.GS
NRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTPYTFGQGTK
1C1 (light chain constant domain) (SEQ ID NO: 14)
RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVi
EQDSKDSTYSLSSTLTLSKADYEKHKVYAGEVTHQGLSSPVTKSFSRGEC
1C11 (SEQ ID NO: 16)
EIVLTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGSN
RASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGLQSPIVTFGQGTK
1 D4 (SEQ ID NO: 18)
DVVMTQSPLSLPVTPGESASISCRSSQSLLHSNRYNYLDWYLQKPGQSPQLLIYLGS
NRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQTPY7FGQGTK
1 E4 (SEQ ID NO: 22)
DIQLTQSPSSLSASVGDRVTITCRASQSISDFLNWYQQKPGKAPKLLIYA4SSLQTGVP
SRFGGSGSGTEFTLTISSLQPEDLGTYYCQQSY/MPDTFGQGTK
1 H6 (SEQ ID NO: 24)
DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQLLIYLGS
NRASGVPDRFSGSGSGTDFTLQISRVEAEDAGVYYCMQGLQ7PY7FGQGTK
1 B8-VHH (SEQ ID NO: 32)
QVQLQESGGGLVQPGGSLRLSCAASGSSERFTSVAWYRQAPGKERELVAF/TNGGS 7RYTDPVKGRFTISRDNAKNTVYLQMNSLKAEDTAVYYGAMGTSWGQGTQ
QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERELVAV/TSGGS 7HYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYYCTA/GHIVSGD7VYAHLWGQ GTQ
2C4-VHH (SEQ ID NO: 35)
QVQLQESGGGLVQAGGSLRLSCADSGSIFSGNDMAWYRRAPGVERELVAV/TSGGS THYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYYCTTVGHIVSGDTYYAHHWGQ GTQ
2D10-VHH (SEQ ID NO: 36)
QVQLQESGGGLVQAGDSLRLSCADSGSIFSGNDMAWYRRAPGVERELVAV/TSGGS 7HYADSVKGRFTISRDNAQKTWLQTNDLKPEDTAVYYCTA/GfllVSGD7YYAHHWGQ GTQ
| 1.4. Single domain heavy chain variable domain of humanized llama VHH | hu2C4-VHH (SEQ ID NO: 37)
QVQLVESGGGLVQAGGSLRLSCAASGSIFSGNDMSWYRQAPGKGLELVAV/7SGGS TYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCTNGHWSGDTYYAHHWGQ GTL
2. Nucleotide Sequences
1 B6, 1C1, 1C11, 1 D4, 1 H6 (SEQ ID NO: 41)
GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGGGTCCTCGGT
GAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAGCAGCTATGCTATCAGCTG
GGTGCGACAGGCCCCTGGACAAGGGCTTGAGTGGATGGGAGGGATCATCCCTAT
C7TTGGTACAGCAAACTACGCACAGAACTTCCAGGGCAGAGTCACCATGACCGCA
GACACGTCCATAAGCACAGCCTAGATGGAGCTGAGCAGCCTGAGATCTGAGGAG
ACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGA77TCGCTACTGGGGC
CAGGGAACCCTG
1 E4 (SEQ ID NO: 45)
CAGGTACAGCTGCAGCAGTCAGGTCCAGGGCTGGTGAAGCCCTCGCAGACCCTC
TCACTCACCTGTGCCATCTCCGGGGACAGTATCTCTAGTAACAGTGTTGCTTGGA
ACTGGATCAGGCAGTCCCCATCGAGAGGCCTTGAGTGGCTGGGAAGGACATACT
ACAGGTCCAAGTGGTACAG7GATTATGCAATATCTGTGAAAGGTCGATTAGACAT
GAGGACACGGCTGTGTATTATTGTGCAAG4GAAG7TG4GGGCAGCAGCTATGAT
GC7T7TGATATCTGGGGCCAAGGGACAATG
1 B6 (SEQ ID NO: 49)
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGG
CCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTA
TTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTAT7TG
GG7TC7AATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGC
ACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATT
ACTGCATGCAAGCTCTACAAACTCCGTACAC7TTTGGCCAGGGGACCAAG
1 B6 (light chain constant domain) (SEQ ID NO: 50)
GGAACTGTGGCTGCACCATCTGTCTTCATCTTGGCGGCATGTGATGAGCAGTTGA
AATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGC
CAAAGTACAGTGGAAGGTGGATAACGCCCTCCAATCGGGTAACTCCCAGGAGAG
TGTGiCAGAGGAGGACAGCAAGGAGAGGAGCTACAGCCTGAGGAGGAGCCTGAC
GCTGAGCAAAGCAGACTACGAGAAACACAAAiTCTACGCCTGCGAAGTCACCCAT
CAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAiCAGGGGAGAGTGT
1C1 (SEQ ID NO: 49)
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGG
GCTCGATGTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTA
TTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTAT7TG
GG7TCTAATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGC
ACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATT
ACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGGACCAAG
1C1 (light chain constant domain) (SEQ ID NO: 51)
CGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATGAGCAGTTGA
AATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAACTTCTATCCCAGAGAGGC
GAAAGTAGAGTGGAAGGTGGATAAGGCCGTCCAATCGGGTAACTGCCAGGAGAG
TGTQiCAGAGCAGGACAGCAAGGACAGCACCTACAGCCTCAGCAGCACCCTGAC
GCTGAGCAAAGCAGACTACGAGAAACACAAAiTCTACGCCTGCGAAGTCACCCAT
GAGGGCCTGAGCTCGGCGGTCAGAAAGAGGTTGAiCAGGGGAGAGTGT
1C11 (SEQ ID NO: 53)
GAAATTGTGCTGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGG
CCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTA
GG7TC7AATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGT
ACAGATTTTACACTGAAAATAAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATTA
CTGCATGCAAGGTCTACAAAGTCCCTGGACGTTCGGCCAAGGGACCAAG
1 D4 (SEQ ID NO: 55)
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGTCGG
GCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATAGATACAACTA
TTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTAT7TG
GG7TC7AATCGGGCCTCCGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGC
ACAGATTTTACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTATT
ACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGGACCAAG
1 E4 (SEQ ID NO: 59)
GACATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAGGAGACAGAG
TCACCATCACTTGCCGGGCAAGTCAGAGTATTAGCGACTTTTTAAATTGGTACCA
GCAGAAACCAGGTAAAGCCCCGAAGCTCCTGATCTATGCTGCATCGAGTTTACAA
ACTGGGGTCCCCTCAAGATTCGGTGGCAGTGGATCTGGGACAGAATTCACTCTCA
CCATAAGCAGTCTACAACCTGAAGATTTGGGAACTTATTACTGTCAACAGAG7TAC
A7TATGCCCGACACTTTTGGCCAGGGGACGAAA
1 H6 (SEQ ID NO: 61)
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTGGAGAGCCGG
CCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGCATAGTAATGGATACAACTA
TTTGGATTGGTACCTGCAGAAGCCAGGGCAGTCTCCACAGCTCCTGATCTAT7TG
GG7TC7AATCGGGGCTCCGGGGTCCGTGACAGGTTCAGTGGCAGTGGATCAGGC
ACAGATTTTACACTGCAAATCAGCAGAGTGGAGGCTGAGGATGCTGGGGTTTATT
ACTGCATGCAAGGTCTACAGACTCCGTACAC7TTTGGCCAGGGGACCAAG
1A5 (SEQ ID NO: 65)
CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGGAGGGTCTCT
GAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGTGGCAATGACATGGCCTG
GTACCGCCGGGCTCCAGGGGTGGAGCGCGAGTTGGTCGCGGTTA7TACTAGCG
GTGGTAGTACACACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGA
CAATGCCCAGAAGACCGTATATCTGCAAACGAACGACTTGAAACCTGAGGACACG
GCCGTGTATTACTGCACAAACGGAAGA7GG7CAGGCGAMCT7^CT47GCCCAT
CACTGGGGCCAGGGGACCCAG
1 B8 (SEQ ID NO: 69)
CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGGGGGGTCTCT
GTACCGCCAGGCTCCAGGAAAGGAGCGCGAGTTGGTCGCATTTATTACTAATGG
TGGTAGCACAAGATATACAGACCCCGTGAAGGGCCGATTCACCATCTCCAGAGA
CAACGCCAAGAACACGGTGTATCTGCAAATGAACAGCCTGAAAGCTGAGGACACG
GCCGTCTATTATTGTATGGCGGGTACGTCCTGGGGCCAGGGGACCCAG
2B7 (SEQ ID NO: 71)
CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGGAGGGTCTCT GAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGTGGCAATGACATGGCCTG GTACCGCCGGGCTCCAGGGGTGGAGCGCGAGTTGGTCGCGGTTA7TACTAGCG
GTGGTAGTACACACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGA CAATGCCCAGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACACG GCCGTGTATTACTGCACA44 CGGAA GA TGGTCAGGCGA TA CTTACTA TGCCCA T
CTCTGGGGCCAGGGGACCCAG
2C4 (SEQ ID NO: 72)
CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGGGGGCTCTCT GAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGTGGCAATGACATGGCCTG GTACCGCCGGGCTCCAGGGGTGGAGCGCGAGTTGGTCGCGGTTA7TACTAGCG
GTGGTAGTACACACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGA CAATGCCCAGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACACG GCCGTGTATTACTGCACA44 CGGAA GA TGGTCAGGCGA TA CTTACTA TGCCCA T
CACTGGGGCCAGGGGACCCAG
2D10 (SEQ ID NO: 73)
CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGGGGACTCTCT
GAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGTGGCAATGACATGGCCTG
GTACCGCCGGGCTCCAGGGGTGGAGCGCGAGTTGGTCGCGGTTA7TACTAGCG GTGGTAGTACACACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGA
CAATGCCCAGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACACG GCCGTGTATTACTGCACAA4CGGAAGATGGTCAGGCGATAC7TACTA7GCCCAT CACTGGGGCCAGGGGACCCAG
CAGGTGCAGCTGGTGGAGTCTGGGGGAGGATTGGTGCAGGCTGGGGGCTCTCT
GAGACTCTCCTGTGCAGCCTCTGGAAGCATCTTCAGTGGCAATGACATGTCCTG
GTACCGCCAGGCTCCAGGGAAGGGACTGGAGTTGGTCGCGGTTA7TACTAGCGG
TGGTAGTACATACTATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGAC
CGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTACTATGCCCATCA
CTGGGGCCAGGGGACCCTG
BRIEF DESCRIPTION OF FIGURES
Figure 1 shows the flow cytometry analysis of the surface expression of human EpCAM protein on multiple cells lines with epithelial morphology (HT-29, AGS, HepG2, Hep3B, MCF-7) and non-epithelial morphology (HeyA8, A172, U-87) and human T cells isolated from healthy donor blood tissue. A commercially available mouse anti-human EpCAM monoclonal antibody directly conjugated to BV421 fluorescent dye was used.
Figure 2A shows the binding ELISA assay results of 6 Fab clones to the antigen protein. The 6 Fab clones were tested using crude culture supernatants in a binding ELISA assay to assess antigen binding to biotinylated human EpCAM with a poly-His tag, detected by goat-anti-human Fab-HRP.
Figure 2B shows the flow cytometry analysis of the 6 Fab clones in their binding to cell surface expressed EpCAM. Using crude culture supernatants, the 6 Fab clones were tested on their binding to EpCAM positive cell HT-29 and EpCAM negative human T cells. In both assays, supernatant from a culture medium alone well (“Blank”) was used as background control.
Figure 2C shows the binding affinity results of the lgG1 antibodies. Six anti- EpCAM Fab clones were cloned and expressed as lgG1 antibodies and their binding affinity to the biotinylated human EpCAM protein antigen were tested using affinity binding ELISA and compared to the benchmark IgG (the anti-EpCAM arm of “MT110”). Antigen binding EC50 values of anti-EpCAM IgG 1 antibodies were calculated by PRISM.
Figure 3A shows the structural format of anti-EpCAM BiTE antibodies.
Figure 3B shows the binding kinetics of anti-EpCAM BiTE antibodies for biotinylated human EpCAM protein antigen using binding ELISA.
Figure 3C shows the results of the flow cytometry analysis at different concentrations for the anti-EpCAM BiTE antibodies to EpCAM positive HT-29 cells, Figure 3D shows the results of the flow cytometry analysis at different concentrations for the anti-EpCAM BiTE antibodies to EpCAM negative HeyA8 cells, and Figure 3E shows the results of the flow cytometry analysis at different concentrations for the anti-
EpCAM BiTE antibodies to CD3 positive human T cells. The percentages of cells positively stained by anti-EpCAM BiTE antibodies are plotted.
Figure 3F shows the binding of Benchmark BiTE antibody (“MT1 10”) to HT-29 and HeyA8 cells.
Figure 3G shows the binding EC50 values of anti-EpCAM BiTE antibodies to HT- 29 cells as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively.
Figure 4A shows the xCelligence impedance assay results for the anti-EpCAM BiTE antibodies. Cytolysis of EpCAM positive HT-29 cells was mediated by activated human T cells with time-course measurement using xCelligence impedance assay, upon treatment with 6 different anti-EpCAM BiTE antibodies (clones 1 B6, 1C1 , 1C11 , 1 D4, 1 E4 and 1 H6).
Figure 4B shows the Mean % cytolysis ± SD in duplicate wells at different concentrations at 72 hours.
Figure 4C shows the EC50 values of anti-EpCAM BiTE antibodies in killing of HT-29 cells as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively.
Figure 5A shows the binding ELISA results of 5 llama VHH clones to the antigen protein. The 5 llama VHH clones were tested using crude culture supernatants in a binding ELISA assay to assess their antigen binding to biotinylated human EpCAM with a poly-His tag, and detected by HRP-conjugated anti-HA.1 1 epitope tag antibody.
Figure 5B shows the flow cytometry analysis of the 5 llama VHH clones in their binding to cell surface expressed EpCAM. Using crude culture supernatants, the 5 VHH clones were tested for binding to EpCAM positive cell AGS. In both assays, supernatant from a culture medium alone well (“Blank”) was used as background control.
Figure 6A shows the structural format of anti-EpCAM VHH BiTE antibodies.
Figure 6B binding kinetics of anti-EpCAM VHH BiTE antibodies for biotinylated human EpCAM protein antigen using binding ELISA.
Figure 6C shows the results of the flow cytometry analysis at different concentrations for the anti-EpCAM VHH BiTE antibodies to EpCAM positive HT-29 cells, Figure 6D shows the results of the flow cytometry analysis at different concentrations for the anti-EpCAM VHH BiTE antibodies to EpCAM negative HeyA8 cells, and Figure 6E shows the results of the flow cytometry analysis at different concentrations for the
anti-EpCAM VHH BiTE antibodies to CD3 positive human T cells. The percentages of cells positively stained by anti-EpCAM VHH BiTE antibodies were plotted using PRISM software.
Figure 6F shows the binding EC50 values of anti-EpCAM VHH BiTE antibodies to HT-29 cells as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively. All anti-EpCAM VHH BiTE antibodies used the same anti-CD3 clone as used in the benchmark antibody (“MT 110”).
Figure 7A shows the cytolysis of EpCAM positive HT-29 cells, Figure 7B shows the cytolysis of EpCAM positive HepG2 cells, Figure 7C shows the cytolysis of EpCAM positive Hep3B cells and Figure 7D shows the cytolysis of EpCAM negative HeyA8 cells. Cytolysis of the cells was mediated by activated human T cells with time-course measurement using xCelligence impedance assay, upon treatment with 5 different anti- EpCAM VHH BiTE antibodies (clones 1 A5-VHH, 1 B8-VHH, 2B7-VHH, 2C4-VHH, and 2D10-VHH) with the E:T ratio of 4:1. Data was presented as % cytolysis at different concentrations at either 96 hours (Figures 7A -C) or 72 hours (Figure 7D).
Figure 7E shows the EC50 values of anti-EpCAM VHH BiTE antibodies in killing of different cells at either 96 hours (96h) or 72 hours (72h) calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively. All anti-EpCAM VHH BiTE antibodies used the same anti-CD3 clone as used in the benchmark antibody (“MT 110”).
Figure 8A shows the binding kinetics of llama derived anti-EpCAM bi-specific T- cell engagers using 2C4-VHH and its humanized clone hu2C4-VHH paired with anti-CD3 clone Okt3. Anti-EpCAM 2C4-VHH/Okt3, hu2C4-VHH/Okt3 BiTE antibodies were tested for their binding to biotinylated human EpCAM protein antigen using binding ELISA and the antigen binding EC50 values were tabulated.
Figure 8B shows the binding of the anti-EpCAM 2C4-VHH/Okt3, hu2C4- VHH/Okt3 BiTE antibodies tested by flow cytometry analysis at different concentrations to EpCAM positive HT-29 cells, Figure 8C shows the binding of the anti-EpCAM 2C4- VHH/Okt3, hu2C4-VHH/Okt3 BiTE antibodies to EpCAM negative, CDS negative HeyA8 cells, and Figure 8D shows the binding of the anti-EpCAM 2C4-VHH/Okt3, hu2C4- VHH/Okt3 BiTE antibodies to CD3 positive human T cells. The percentage of cells positively stained by anti-EpCAM BiTE antibodies were plotted.
Figure 8E shows the binding EC50 values of anti-EpCAM 2C4-VHH/Okt3 and hu2C4-VHH/Okt3 BiTE antibodies to HT-29 cells as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively.
Figure 9A shows the T cell mediated cytotoxicity of EpCAM positive cells by anti- EpCAM bi-specific T-cell engagers using 2C4-VHH and its humanized clone hu2C4-VHH paired with anti-CD3 clone Okt3, and Figure 9B shows the T cell mediated cytotoxicity of EpCAM negative cells by anti-EpCAM bi-specific T-cell engagers using 2C4-VHH and its humanized clone hu2C4-VHH paired with anti-CD3 clone Okt3. Cytolysis of EpCAM positive MCF-7 cells (Figure 9A) and EpCAM negative HeyA8 cells (Figure 9B) was mediated by activated human T cells with time-course measurement using xCelligence impedance assay, upon treatment with anti-EpCAM VHH BiTE antibodies 2C4- VHH/Okt3 and hu2C4-VHH/Okt3, with the E:T ratio of 4:1. Data was presented as % cytolysis at different concentrations at 48 hours.
Figure 9C shows the EC50 values of the benchmark BiTE, 2C4-VHH/Okt3 and hu2C4-VHH/Okt3 BiTE antibodies in killing MCF-7 cells at 48 hours as calculated by PRISM, with top and bottom constraints set at 100% and 0% respectively.
Figure 9D shows the ELISA measurement of interferon-y secretion from human T cells activated by different anti-EpCAM BiTE antibodies after 48 hours of co-culture with either EpCAM positive MCF-7 cells or EpCAM negative HeyA8 cells, and Figure 9E shows the ELISA measurement of IL-2 secretion from human T cells activated by different anti-EpCAM BiTE antibodies after 48 hours of co-culture with either EpCAM positive MCF-7 cells or EpCAM negative HeyA8 cells.
Figure 10A shows structural formats of anti-GPC3 CAR T (5C4) or GE CAR- BiTE T cells (anti-GPC3 CAR T secreting anti-EpCAM BiTE, “MT110”, “NbO1 -O13A” or “Nb01 -013B” was used as BiTE) or 19E CAR-BiTE T cells (anti-CD19 CAR T secreting anti-EpCAM BiTE, “Nb01-013A” or “Nb01 -013B” was used as BiTE).
Figure 10B shows the results of an in vitro assay of Hep3B (GPC3High, EpCAMHigh) cells by anti-GPC3 CAR T, GE CAR-BiTE T cells or 19E CAR-BiTE T cells. Figure 10C shows the results of an in vitro assay of HT-29 (GPC3Low, EpCAMHigh) cells by anti-GPC3 CAR T, GE CAR-BiTE T cells or 19E CAR-BiTE T cells. Figure 10D shows the shows the results of an in vitro assay of HeyA8 (GPC3 ve, EpCAM ue) cells by anti- GPC3 CAR T, GE CAR-BiTE T cells or 19E CAR-BiTE T cells. The assays were
performed using xCelligence cell impedance assay and presented over 72 hours post co-culture of target cells and effector cells (E:T ratio = 1 :1).
Figure 11 A shows the structure map of HE CAR-BITE T (clone 4D5 or F5) using anti-EpCAM VHH BITE (Nb01-013A).
Figure 11 B shows the FACS analysis results of tumor markers (HER2 and EpCAM) expressed on AGS and MDA-MB468 cells.
Figure 11C shows the percentage of CAR expression on anti-HER2 CAR T (4D5 or F5) and HE CAR- BITE T (4D5 or F5) cells detected by flow cytometry analysis.
Figure 11 D shows the percentage of cytolysis of AGS cells mediated by anti- HER2 CAR T (4D5 or 5F) and HE CAR-BITE T (4D5 or F5) cells with time-course measurement using xCelligence impedance assay (E:T ratio = 2:1 ).
Figure 11 E shows the percentage of cytolysis of MDA-MB468 cells mediated by anti-HER2 CAR T (4D5 or 5F) and HE CAR-BITE T (4D5 or F5) cells with time-course measurement using xCelligence impedance assay (E:T ratio = 1 :1 ).
Figure 11 F shows the ELISA measurement of Interferon-r and IL-2 measured using culture supernatant collected at 36 hours post co-culture effector CAR T cells with AGS cells.
Figure 11G shows the ELISA measurement of Interferon-r and IL-2 measured using culture supernatant collected at 36 hours post co-culture effector CAR T cells with MDA-MB468 cells.
Figure 12 shows a graph demonstrating that the anti-EpCAM BITE secreted from GE CAR-BITE T cells can mediate strong T cell killing of cancer cells. The anti-EpCAM BITE (The benchmark BITE “MT110” was used) were secreted by human GE CAR-BITE T (MT110) cells and naive human T cells were isolated from PBMCs of a healthy donor. The time-course measurement was performed by xCelligence impedance assay (E:T ratio = 6:1 ), and the percentages of cytolysis of Hep3B cells mediated by anti-EpCAM BITE activated naive T cells are shown.
Figure 13 shows a graph demonstrating the detection of anti-EpCAM BITE molecule Nb01 -013A secreted from GE CAR-BITE T cells by ELISA. Anti-GPC3 CAR T (5C4) cells or anti-GPC3 CAR T cells secreting anti-EpCAM BITE (Nb01 -013A) (named as “GE CAR-BITE T (Nb01 -013A)”) were cultured in T cell growth medium containing IL- 7 (20 ng/ml) and IL-15 (5 ng/ml). The starting cell density was 0.5 million per ml and the percentages of CAR expression in both cultures were around 60%. Cell culture
supernatants were collected daily (24h, 48h, 72h, 96h) for an ELISA to detect the amount of secreted anti-EpCAM BITE molecule NbO1-O13A. Briefly, human EpCAM-Fc tag protein was used to coat the ELISA plate overnight, after blocking with Casein for 2 hours, the culture supernatants containing the anti-EpCAM BiTE molecule NbO1 -O13A were added to the plate. After 1 -hour incubation, the plate was washed and the bound BiTE molecules were detected by an HRP conjugated secondary antibody against the His-tag.
Figure 14 shows a graph demonstrating the detection of anti-EpCAM BiTE molecule Nb01 -013A secreted from HE CAR-BITE T cells by ELISA. Anti-HER2 CAR T (4D5 or F5) cells or anti-HER2 CAR T cells secreting anti-EpCAM BiTE (Nb01 -013A) (named as “HE CAR-BiTE T (4D5 or F5)”) were cultured in T cell growth medium containing IL-7 (20 ng/ml) and IL-15 (5 ng/ml). The starting cell density was 1.5 million per ml and the percentages of CAR expression ranged from 36.8% to 57.2%. Cell culture supernatants were collected at 24h and 48h for an ELISA to detect the amount of secreted anti-EpCAM BiTE molecule NbO1 -O13A. Briefly, human EpCAM-Fc tag protein was used to coat the ELISA plate overnight, after blocking with Casein for 2 hours, the culture supernatants containing the anti-EpCAM BiTE molecule NbO1 -O13A were added to the plate. After 1 -hour incubation, the plate was washed and the bound BiTE molecules were detected by an HRP conjugated secondary antibody against the His-tag.
Figure 15 shows a graph demonstrating that human GE CAR-BiTE T cells using anti-EpCAM VHH constructed BiTEs showed superior tumor killing in in vivo Hep3B xenografts. Two million Hep3B (GPC3High, EpCAMHigh) cells were subcutaneously injected into the right flank of 50 male NSG mice (Day -21 ). On Day 0, mice were regrouped according to the measurable tumor size and eight million CAR T (5C4) cells, GE CAR-BiTE T cells (Anti-EpCAM BiTE secreting anti-GPC3 CAR T cells, “MT110”, “Nb01 -013A” or “NbO1 -O13B” was used as BiTE), 19E CAR-BiTE T cells (Anti-EpCAM BiTE secreting anti-CD19 CAR T cells, “NbO1-O13A” or “NbO1-O13B” was used as BiTE), or Mock T cells were intravenously injected into these mice via tail vein. Tumor sizes of each mouse were measured and recorded every 3 to 7 days. The curve shows tumor sizes up to Day 92.
Figure 16 shows a graph demonstrating that human HE CAR-BiTE T cells using anti-EpCAM VHH constructed BiTEs showed superior tumor killing in in vivo AGS xenografts. 1.3 million AGS (Her2H'ah, EpCAMHigh) cells were subcutaneously injected
into the right flank of female NSG mice (Day -9). On Day 0, mice were re-grouped according to the measurable tumor size and five million CAR T (4D5) cells, CAR T (F5) cells, HE CAR-BiTE T (4D5) cells (“NbO1 -O13A” was used as BiTE), HE CAR-BiTE T (F5) cells (“Nb01 -013A” was used as BiTE), or Mock T cells were intravenously injected into these mice via tail vein. Tumor sizes of each mouse were measured and recorded every 3 to 7 days.
EXAMPLES
Example embodiments of the disclosure will be better understood and readily apparent to one of ordinary skill in the art from the following discussions and if applicable, in conjunction with the figures. It should be appreciated that other modifications may be made without deviating from the scope of the invention. Example embodiments are not necessarily mutually exclusive as some may be combined with one or more embodiments to form new exemplary embodiments. The example embodiments should not be construed as limiting the scope of the disclosure.
Example 1 - Discovery of fully human anti-EpCAM antibodies from naive human Fab phage display library
To identify cell lines that can be used for characterizing the properties of anti- EpCAM antibodies involved in this invention, the present inventors analysed the surface EpCAM antigen expression using a commercially available anti-EpCAM antibody (Figure 1). As expected, EpCAM had high level of expression on all cells tested with epithelial morphology such as a lung adenocarcinoma cell line HT-29, a gastric adenocarcinoma cell line AGS, a hepatoblastoma cell line HepG2, a hepatocellular carcinoma cell line Hep3B, and a breast cancer cell line MCF-7. However, EpCAM was not expressed on non-epithelial cells, such as human T cells, an ovarian cell line HeyA8, and two glioblastoma cell lines A172 and U-87.
Next, biotinylated recombinant human EpCAM protein with a poly-His tag (hEpCAM-His) was used to isolate low-affinity EpCAM binders from a naive library of Fab sequences constructed in SlgN, using phage display technology. Out of 190 clones
screened, 21 clones showing the positive Fab supernatant binding signals to biotinylated hEpCAM-His protein and specific binding to EpCAM positive HT-29 cells were sequenced and 6 unique sequences were identified: 1 B6, 1C1 , 1 C11 , 1 D4, 1 E4 and 1 H6. Clone 1 B6, 1 C1 , 1 C11 , 1 D4 and 1 H6 share the same sequence in the heavy chain variable regions, however the light chain sequences of the variable region are different, except for clone 1 B6 and 1 C1 which also share the same sequences in their light chain variable region but bearing three amino acid differences in the kappa light chain constant region (see Annex). The results of binding ELISA and flow cytometry analysis of cell binding using Fab supernatants for the 6 unique clones were shown in Figure 2A and Figure 2B, respectively. Next, these Fab antibodies were cloned into lgG1 format and their binding affinity to the antigen protein were determined by affinity binding ELISA (Figure 2C). The binding EC50 values ranged between 3 to 6 nM, which are higher than the binding EC50 of the benchmark IgG (1 .161 nM, the sequence of the anti-EpCAM arm of “MT110” was used), suggesting that these anti-EpCAM antibodies derived from the human naive Fab library had a relatively low binding affinity to the EpCAM antigen.
Example 2 - Use of anti-EpCAM bi-specific T-cell engagers
The anti-EpCAM antibodies were used to construct anti-EpCAM bi-specific T-cell engagers (BiTE). In these constructs, the Fab region of one arm from each of the 6 anti- EpCAM human antibody clones (1 B6, 1C1 , 1011 , 1 D4, 1 E4 and 1 H6) was replaced by an anti-CD3 scFv fragment, and knob-in-hole mutations were introduced to facilitate correct heavy-chain pairing and LALA mutations to remove Fey receptor binding (Figure 3A). These anti-EpCAM BiTE antibodies were first examined for their binding to the antigen protein by affinity binding ELISA. Compared to the benchmark BiTE (anti-EpCAM arm of “MT110" with scFv fragment of anti-CD3 clone Okt3, constructed in the same structure as shown in Figure 3A) showing a binding EC50 of 0.666 nM, BiTE antibodies using the 6 newly identified anti-EpCAM clones showed much lower absorbance reading at 450nm and higher EC50 values, suggesting lower binding affinities to the antigen (Figure 3B).
The abilities of these antibodies to specifically recognize and bind to both EpCAM and human CD3 molecules on the cell surfaces were measured using HT-29, HeyA8, and human T cells. HT-29 cells and human T cells constitutively express high level of EpCAM and CD3, respectively, while HeyA8 cells do not express EpCAM or CD3. In this
assay, all 6 anti-EpCAM BITE antibodies bound to the EpCAM expressing cell HT-29 (Figure 3C) as well as human T cells expressing CD3 (Figure 3E). The binding EC50 to HT-29 cells is 5-20 times lower than that of the benchmark BiTE (MT1 10, Solitomab, constructed in the same structure as shown in Figure 3A), which is 4.106 pM (Figure 3G). However, unlike the benchmark BiTE, which showed 10-20% of non-specific binding to EpCAM negative HeyA8 cells at high concentrations of 0.5, 2, and 10 nM (Figure 3F), these antibodies did not bind to HeyA8 cells at all tested concentrations (Figure 3D). This suggests that these anti-EpCAM bi-specific T-cell engagers could bind to cell surface antigen in a highly specific manner.
These anti-EpCAM BiTE antibodies were then tested for their efficacy in antibody dependent T cell mediated cytotoxicity assay. Briefly, EpCAM positive HT-29 cells (T: Target cells) were seeded onto the xCelligence E-plate and cultured for overnight with cell index values measured. The next day, immediately after addition of anti-EpCAM BiTE antibodies at various concentrations, primary T cells isolated from human PBMCs (E: Effector cells) were added to the target cells at an Effector to Target ratio of 6 to 1 (E:T = 6:1 ). The assay was continued for a further 96 hours to measure the target cell index values using xCelligence RTCA system (Figure 4A). Except for clone 1 E4, which only induced profound cytolysis of target cell at high concentration of 10 nM and 1 nM, all the other anti-EpCAM BiTE antibodies (clone 1 B6, 1 C1 , 1C11 , 1 D4 and 1 H6) were able to kill 70-100% of HT-29 cells within 72 hours at a concentration as low as 0.1 nM (Figure 4B). Among the 6 clones, clone 1 C1 and 1 H6 BiTE antibodies showed the lowest EC50 values of 18.5 pM and 12.02 pM, respectively; while 1 B6, 1C11 , 1 D4, and 1 E4 showed low to moderate cell killing efficacy (Figure 4C).
In summary, results from the above assays, depicted in Figures 1 - 4, showed that the disclosed highly specific human anti-EpCAM antibodies in the format of bispecific T cell engagers could elicit a wide range of low to high potency in inducing cell death of EpCAM expressing cells, which have the potential to be used in treating solid tumors with enhanced safety profiles (based on in vitro binding and killing assay results).
Example 3 - Discovery of anti-EpCAM llama antibodies from immunized llama
To discover anti-EpCAM llama VHH antibodies, the present inventors immunized a male alpaca with recombinant human EpCAM protein with a poly-His tag (hEpCAM- His) for a total of six immunizations with time intervals of 1 -2 weeks. The process of llama
immunization was done by VIB Nanobody Core at VUB (Vrije Universiteit Brussel) as a paid service. Subsequent humanization of the llama antibodies was performed at SlgN. Around 150 pg of proteins was used for the two initial immunizations and 100 pg of proteins were used for the last four booster immunizations. After six immunizations, peripheral blood lymphocytes were collected from the alpaca for RNA extraction, and cDNA was used as the PCR template to amplify VHH sequences for a VHH library to be constructed. Biotinylated recombinant human EpCAM protein with a poly-His tag (hEpCAM-His) was used to isolate EpCAM binders from the constructed llama VHH library, using phage display technology. Out of 190 clones screened, 8 clones showing the positive VHH supernatant binding signals to biotinylated hEpCAM-His protein and specific binding to EpCAM positive AGS cells were sequenced and 5 unique sequences were identified: 1 A5, 1 B8, 2B7, 2C4 and 2D10 (See sequences below). The results of binding ELISA and flow cytometry analysis of cell binding using crude supernatants for the 5 unique VHH clones were shown in Figure 5.
Similar to those anti-EpCAM human Fab clones, the 5 VHH clones of anti-EpCAM antibodies were also used to construct anti-EpCAM VHH BiTE antibodies (Figure 6A). These anti-EpCAM VHH BiTE antibodies were first examined for their binding to the antigen protein by affinity binding ELISA. Compared to the benchmark BiTE (Figure 3B), BiTE antibodies using these 5 anti-EpCAM VHH clones showed comparable or even lower binding EC50 values, suggesting high binding affinities to the antigen (Figure 6B).
The ability of these antibodies to specifically recognize and bind to both EpCAM and human CD3 molecules on the cell surfaces was also measured using HT-29 (EpCAM positive), HeyA8 (EpCAM negative, CD3 negative), and human T cells (CD3 positive) cells. Except for clone 1 B8-VHH, the other four clones (1A5-VHH, 2B7-VHH, 2C4-VHH and 2D10-VHH) all bound strongly to EpCAM expressing cell HT-29 (Figure 6C) as well as human T cells (Figure 6E). The binding EC50 to HT-29 cells ranged from 10-20 pM and the binding specificity was superior as none of them showed binding to EpCAM negative HeyA8 cells even at the highest concentration of 10 nM (Figure 6D).
These anti-EpCAM VHH BiTE antibodies were also tested for their killing efficacy in antibody dependent T cell mediated cytotoxicity assay. The results showed that, except for clone 1 B8-VHH, which only induced profound cytolysis of HT-29 cells at the highest concentration of 10nM, all the other four anti-EpCAM VHH BiTE antibodies (1A5-
VHH, 2B7-VHH, 2C4-VHH and 2D10-VHH) were able to kill 90-100% of EpCAM positive HT-29 (Figure 7A), HepG2 (Figure 7B), and Hep3B (Figure 7C) cells within 96 hours at concentrations as low as 10 pM, but spared EpCAM negative cell HeyA8 (Figure 7D). Among the 5 clones, clone 2B7-VHH, 2C4-VHH and 2D10-VHH all showed very potent cell killing efficacy (Figure 7E), while 2C4-VHH and 2D10-VHH exhibited better killing specificity than 2B7-VHH (Figure 7D).
As 2C4-VHH and 2D10-VHH shared same CDR sequences but the framework of 2C4-VHH was closer to human VH sequences, 2C4-VHH was chosen as the lead VHH clone for further development. A humanized clone hu2C4-VHH was constructed and its antigen binding ability was compared with the parental 2C4-VHH clone using BITE antibodies paired with a well-characterized anti-CD3 agonist Okt3. Humanization resulted in 10 times reduction in the binding affinity to the antigen protein (Figure 8A) and about 2.5 times weaker cell binding (Figure 8B and Figure 8E). The binding to the CD3 arm was not affected by the VHH arm humanization (Figure 8D), while hu2C4- VHH/Okt3 also showed high binding specificity as it didn’t bind to EpCAM negative HeyA8 cells, similar to its parental clone (Figure 8C).
Killing potency of the BiTE antibodies using hu2C4-VHH/Okt3 was next tested using EpCAM positive MCF-7 cells. Interestingly, use of clone Okt3 as the anti-CD3 arm made the 2C4-VHH BiTE antibody extremely potent to have shown a cell killing EC50 less than 0.1 pM. Although humanized version of hu2C4-VHH/Okt3 BiTE showed a 144.1 times reduction in killing potency as compared to the parental clone, the EC50 was still falling within the range of pico molar (Figure 9A, Figure 9C), making the hu2C4- VHH/Okt3 a perfect lead for the potential downstream applications. Similar to the 2C4- VHH/Okt3 BiTE, hu2C4-VHH/Okt3 also did not kill EpCAM negative HeyA8 cells (Figure 9B) nor did it induce interferon-y (Figure 9D) or IL-2 (Figure 9E) secretion upon coculture, as otherwise shown in the case of the benchmark BiTE (MT110, constructed in the same structure as shown in Figure 3A).
In summary, our BiTE antibodies derived from llama VHH (Figures 5 - 7) and a humanized counterpart hu2C4-VHH (Figures 8 - 9) all exerted highly potent and specific killing functions directed to EpCAM expressing cells, which can be used in treating solid tumors of epithelial origins if delivery is restricted locally at the tumor sites.
Example 4 - Experiments determine binding affinity of anti-EpCAM human lgG1 antibodies and anti-EpCAM llama VHH antibodies
Binding affinity of anti-EpCAM human IgGi antibodies
Binding affinities of 6 anti-EpCAM IgGi antibodies was measured via Bio-Layer Interferometry (BLI) analysis using Octet RED96 system and shown in Table 1. All 6 antibody clones exhibited binding affinities to the recombinant EpCAM protein at the nanomolar scales ranging from the lowest affinity at 32.39 nM (clone 1 H6) to the highest affinity at 1.432 nM (clone 1 D11 ). Compared to the 2 high affinity clinically tested anti- EpCAM antibodies 3622W94 and ING-1 , the Koff rates of which were 1.8 x 10'5, and 3.2 x 10-5 respectively, our anti-EpCAM lgG1 antibodies had a much slower off-rates (6.134 x 104 to 3.278 x 103) and resulted in much lower binding affinities than 3622W94 (0.19 nM) and ING-1 (0.16 nM) (Ref - Munz et al. Cancer Cell International 2010, 10:44).
Table 1. Binding affinity (Ko), association rate, and dissociation rate (Kd) of anti-EpCAM human lgG1 antibodies to human EpCAM protein measured by Octet BLI analysis.
llama VHH antibodies
Binding affinities of 5 anti-EpCAM VHH antibodies was measured via Bio-Layer Interferometry (BLI) analysis using Octet RED96 system and shown in Table 2. All 5 VHH antibody clones were expressed as bivalent Fc fusion protein for the assay and exhibited binding affinities to the recombinant EpCAM protein at the nanomolar scales ranging from the lowest affinity at 9.715 nM (clone 2C4-VHH) to the highest affinity at 1.975 nM (clone 1 B8-VHH).
Table 2. Binding affinity (KD), association rate, and dissociation rate (Kd) of anti-EpCAM llama VHH antibodies (expressed as bivalent Fc fusion) to human EpCAM protein measured by Octet BLI analysis.
Example 5 - Experiments demonstrating that human CAR T cells secreting anti- EpCAM BITE molecules showed in v/fro cytotoxicity in killing EpCAM expressing cells.
The anti-EpCAM bi-specific T-cell engagers using 2C4-VHH paired with either the anti-CD3 clone Okt3 (named as “Nb01 -013A”) or the anti-CD3 clone used in “MT110” (named as “Nb01 -013B”) were used to construct secreted forms of anti-EpCAM BITE with a His-tag. These anti-EpCAM BiTEs were inserted into different CAR constructs against different tumor antigens, for example, GPC3, CD19 or HER2.
To showcase that anti-EpCAM BITE molecules can be secreted by human T cells and contribute to the cytotoxicity of EpCAM expressing target cell killing, the present inventors constructed anti-GPC3 CAR T cells secreting different anti-EpCAM BiTEs (“MT110”, “Nb01-013A”, and “Nb01 -013B”) and named them as GE CAR-BiTE T cells. The present inventors also constructed anti-CD19 CAR T cells secreting different anti- EpCAM BiTEs (“Nb01 -013A” or “Nb01 -013B”), which were named as “19E CAR-BiTE T” cells (Figure 10A). These GE CAR-BiTE T cells and 19E CAR-BiTE T cells were tested for their in vitro killing efficacies using Hep3B (GPC3Highh, EpCAMHighh), HT-29 (GPC3 Low, EpCAM Highh) and HeyA8 (GPC3 ve’ EpCAM've) cells.
An E:T ratio of 1 :1 (adjusted to 10% CAR expression level) was applied in the in vitro killing assay with the xCelligence RTCA system. All GE CAR-BiTE T cells did not show killing of HeyA8 (GPC3-ve, EpCAM-ve) cells at the low E:T ratio (Figure 10D), however, a strong cytotoxicity was observed in killing EpCAM positive cells Hep3B (Figure 10B) and HT-29 (Figure 10C).The 19E CAR-BiTE T cells (“Nb01 -013A” used as BITE) showed partial killing of both EpCAM positive cells Hep3B (GPC3Highh, EpCAMH'ah)(Figure 10B) and HT-29 (GPC3 Low, EpCAM High)(Figure 10C), indicating that the amount of anti-EpCAM BiTEs secreted by the 19E CAR-BiTE T (Nb01-013A) cells in the current in vitro settings exceeded the threshold for BiTE mediated cell killing and was independent of the CAR-specific antigen expression level. On the contrary, the 19E CAR-BiTE T cells (“Nb01 -013B” used as BiTE) only showed a minimal killing of HT-29
(GPC3Low, EpCAMHigh) cells, suggesting that “NbO1 -O13B” BITE has a much weaker potency in mediating T cell killing than “NbO1-O13A” BiTE (Figure 10C).
The present inventors also constructed HE CAR-BITE T cells by fusing the anti- EpCAM BiTE (sequence of “Nb01 -013A” was used) to the anti-HER2 CAR (clone 4D5 from “Trastuzumab” or our in-house anti-HER2 clone F5) lentiviral construct via a P2A cleavable linker (Figure 11A). Following the lentiviral transduction and expansion (Figure 11 C), both AGS (HER2High, EpCAMHigh) and MDA-MB468 (HER2 ve, EpCAMHigh) cells (Figure 11 B) were used to test the in vitro killing efficacy of anti-HER2 CAR T (4D5 or F5) and HE CAR-BiTE T (4D5 or F5) cells. The HE CAR-BiTE T cells were shown to be able to kill AGS cells at a much faster rate than the anti-HER2 CAR alone (Figure 11 D), suggesting the participation of the BiTE in target cell killing. Surprisingly, clone 4D5 constructed anti-HER2 CAR T cells could not initiate efficient killing of AGS cells (Figure 11 D) with low level of Interferon-y secretion (Figure 11 F), suggesting that the cytotoxic function of the HE CAR-BiTE T cells (clone 4D5) was mainly contributed by the secreted anti-EpCAM BiTE. More intriguingly, anti-HER2 CAR T cells (clone 4D5) showed comparable level of killing of HER2 negative MDA-MB468 cells, while the anti- HER2 CAR T cells constructed using our patented clone F5 showed high specificity by sparing the HER2 negative cells (Figure 11 E and 11 G).
Example 6 - Experiments showing that anti-EpCAM BiTE secreted by CAR T cells can elicit strong T cell mediated killing of cancer cells
In another experiment, the culture supernatants containing the anti-EpCAM BiTE molecules secreted by human GE CAR-BiTE T (sequence of “MT110” was used) cells were harvested and mixed with naive human T cells isolated from PBMCs of a healthy donor, before adding to Hep3B (GPC3High, EpCAMHigh) target cells (E:T ratio = 6:1 ). The time-course measurement of BiTE elicited T cell-mediated cytotoxicity was performed by xCelligence impedance assay. The results showed that the anti-EpCAM BiTE molecules secreted by GE CAR-BiTE T (MT110) cells could elicit strong killing of Hep3B cells, while there is no significant killing of Hep3B target cells from the cultures with the addition of supernatants not containing the anti-EpCAM BiTE molecules (Mock T or CAR T) (Figure 12).
Example 7 - Experiments demonstrating that secretion of anti-EpCAM llama VHH BITE from different CAR-BITE T cells can be detected from the in vitro cultures
Both anti-GPC3 CAR T (5C4) and GE CAR-BiTE T (Nb01 -013A) cells were cultured in T cell growth medium containing IL-7 and IL-15 at the starting cell density of 0.5 million per ml. Cell culture supernatants were collected daily for a consecutive four days, followed by an ELISA to detect the amount of secreted anti-EpCAM BITE molecule Nb01 -013A. The results clearly showed that the amount of secreted NbO1-O13A molecules increased over time, suggesting a continuous secretion and accumulation of anti-EpCAM VHH BiTE from the GE CAR-BiTE T (Nb01 -013A) cell cultures (Figure 13).
Similarly, the Nb01 -013A BiTE molecules can also be detected from HE CAR- BiTE T (4D5) and HE CAR-BiTE T (F5) cells from the in vitro cultures. Anti-HER2 CAR T (4D5 or F5) cells or HE CAR-BiTE T (4D5 or F5) cells were cultured in T cell growth medium containing IL-7 and IL-15 at the starting cell density of 1.5 million per ml. Cell culture supernatants were collected at 24h and 48h followed by an ELISA to detect the amount of secreted anti-EpCAM BiTE molecule NbO1 -O13A. For both HE CAR-BiTE T (4D5) and HE CAR-BiTE T (F5), the amount of secreted NbO1-O13A molecules increased overtime, suggesting a continuous secretion and accumulation of anti-EpCAM VHH BiTE from both cultures (Figure 14).
Example 8 - Experiments demonstrating that human CAR T cells secreting anti- EpCAM BiTE molecules showed superior in vivo cytotoxicity in killing EpCAM expressing tumors.
Besides the characterization of the in vitro cytotoxicity of human CAR T cells secreting anti-EpCAM BiTE molecules (Figure 10 and Figure 11), the present inventors also evaluated their in vivo efficacy in killing EpCAM expressing tumors using mouse xenograft models.
First, they used Hep3B (GPC3Highh, EpCAMHighh) xenograft models in NSG mice to test anti-GPC3 CAR T cells secreting different anti-EpCAM BiTE molecules (“MT110”, “Nb01 -013A”, and “NbO1-O13B”) as well as anti-CD19 CAR T cells secreting different anti-EpCAM BiTE molecules (“Nb01 -013A” or “Nb01 -013B”) (Figure 15). Interestingly, Hep3B xenografts from the two 19E CAR-BiTE T cell treated groups of mice showed a similar growth rate as the control groups (“Tumor only” group and “Mock T” group),
suggesting that the in vivo tumor control efficacy by CAR-BiTE T cells is dependent on the CAR-specific antigen expression. The anti-GPC3 CAR T (5C4) cells could effectively control the tumor growth in all tested mice, however, after 3 weeks of tumor shrinkage, the remaining tumors started to grow back, suggesting the tumor escape from the GPC3Ne0a,ive cell populations. In this experiment, the present inventors failed to observe the effect of GE CAR-BiTE T (MT110) cells in controlling the Hep3B xenografts. This was because they had to voluntarily cull the mice when the humane point was hit (tumor sizes exceeded 3000mm3), before the in vivo expansion of GE CAR-BiTE T (MT110) cells reached the threshold points in executing a significant tumor control effect. This may be due to the donor variations in the T cells used to generate the CAR T cells in different batches of experiments. Nevertheless, GE CAR-BiTE T (“Nb01-013A” or “Nb01 - 013B” used as BiTE) cells generated using the same T cell donor showed much potent tumor control efficacies, suggesting that replacing the anti-EpCAM arm with the presently disclosed anti-EpCAM 2C4-VHH significantly improved the in vivo expansion as well as the in vivo killing potency of the GE CAR-BiTE T cells. GE CAR-BiTE T (Nb01 -013A) group of mice achieved efficient tumor control for all tested mice. In addition, three mice remained healthy for more than 90 days after the treatment.
The in vivo efficacy of human CAR T cells secreting anti-EpCAM BiTE molecules was also tested using a second xenograft model of AGS (Her2High, EpCAMHighh) cells treated with anti-HER2 CAR T cells secreting NbO1 -O13A (Figure 16). In line with the in vitro data (Figure 11), AGS appeared to be resistant to 4D5 CAR-T. While CAR T (4D5) failed to control the tumor growth, the other groups of CAR T (F5) or HE CAR-BiTE T cell treatments showed some in vivo tumor control efficacies. CAR T (F5) treatment showed effective control of tumor growth in all 5 mice. However, after 5-6 weeks of tumor shrinkage, the remaining tumors started to grow back and the tumor sizes reached more than 1000mm3, suggesting tumor escape from the Her2Ne0a,iva cell populations. Effective tumor control was observed in 3 and 2 mice, respectively from the HE CAR-BiTE T (4D5) and HE CAR-BiTE T (F5) group, and these mice remained tumor-free up to 181 days post T cell infusion, showing prolonged tumor control by clearing Her2NegativeEpCAMPositive tumor cells.
In summary, this example indicates that human CAR T cells secreting anti- EpCAM BiTE molecules derived from in-house anti-EpCAM 2C4-VHH showed superior in vivo cytotoxicity in killing EpCAM expressing tumors. APPLICATIONS
The presently disclosed antigen binding proteins, variants and fragments thereof may be useful for one or more of the following:
• As diagnostic antibodies for solid tumors that were originated from epithelium with high EpCAM expression; • Anti-EpCAM BiTEs incorporating the disclosed human Fab clones can be used in treating EpCAM high solid tumors due to their low affinity to the EpCAM antigen protein; and
• Anti-EpCAM BiTEs incorporating the llama VHH clones or humanized VHH clone can be used as locally secreted molecules in treating EpCAM positive solid tumors
Claims
1. An antigen binding protein, an antigen binding variant, or an antigen binding fragment thereof that binds specifically to Epithelial Cellular Adhesion Molecule (EpCAM), wherein the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and/or a light chain variable region selected from the group consisting of:
(i) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(II) a heavy chain variable region comprising: a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iii) a light chain variable region comprising: a CDR-L1 comprising:
• QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-L2 comprising:
• LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• AAS (SEQ ID NO: 20) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising:
• MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• MQGLQSPWT (SEQ ID NO: 15) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• QQSYIMPDT (SEQ ID NO: 21) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• MQGLQTPYT (SEQ ID NO: 23) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
(iv) a heavy chain variable region comprising: a CDR-H1 comprising:
• GSIFSGND (SEQ ID NO: 25 ) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-H2 comprising:
• ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto and a CDR-H3 comprising:
• TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
2. The antigen binding protein, variant or fragment thereof of claim 1 , wherein the antigen binding protein, variant or fragment thereof of comprises a heavy chain variable region selected from the group consisting of:
(i) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ii) a heavy chain variable region comprising:
a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and comprises a light chain variable region comprising: a CDR-L1 comprising:
• QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-L2 comprising:
• LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• AAS (SEQ ID NO: 20) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising:
• MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• MQGLQSPWT (SEQ ID NO: 15) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• QQSYIMPDT (SEQ ID NO: 21) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• MQGLQTPYT (SEQ ID NO: 23 ) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
3. The antigen binding protein, variant or fragment thereof of claim 1 , wherein the antigen binding protein, variant or binding fragment thereof comprises a heavy chain variable region comprising: a CDR-H1 comprising:
• GSIFSGND (SEQ ID NO: 25 ) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto a CDR-H2 comprising:
• ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a CDR-H3 comprising:
• TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto,
• MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, or
• TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
4. The antigen binding protein, variant or fragment thereof of any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and/or a light chain variable region selected from the group consisting of:
(i) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a GDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ii) a heavy chain variable region comprising: a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iii) a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and
a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iv) a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQSPWT (SEQ ID NO: 15) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(v) a light chain variable region comprising: a CDR-L1 comprising QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(vi) a light chain variable region comprising: a CDR-L1 comprising QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising AAS (SEQ ID NO: 20) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising QQSYIMPDT (SEQ ID NO: 21) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(vii) a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQTPYT (SEQ ID NO: 23) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(viii) a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ix) a heavy chain variable region comprising: a CDR-H1 comprising GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
(x) a heavy chain variable region comprising:
a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
5. The antigen binding protein, variant or fragment thereof of any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region and a light chain variable region selected from the group consisting of:
(i) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and
a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ii) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQSPWT (SEQ ID NO: 15) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iii) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
a light chain variable region comprising: a CDR-L1 comprising QSLLHSNRYNY (SEQ ID NO: 17) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQALQTPYT (SEQ ID NO: 11) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(iv) a heavy chain variable region comprising: a CDR-H1 comprising GGTFSSYA (SEQ ID NO: 1) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising IIPIFGTA (SEQ ID NO: 2) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising ARSLGGRFRY (SEQ ID NO: 3) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSLLHSNGYNY (SEQ ID NO: 9) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising LGS (SEQ ID NO: 10) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising MQGLQTPYT (SEQ ID NO: 23) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
(v) a heavy chain variable region comprising:
a CDR-H1 comprising GDSISSNSVA (SEQ ID NO: 5) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising TYYRSKWYS (SEQ ID NO: 6) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising AREVEGSSYDAFDI (SEQ ID NO: 7) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and a light chain variable region comprising: a CDR-L1 comprising QSISDF (SEQ ID NO: 19) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-L2 comprising AAS (SEQ ID NO: 20) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-L3 comprising QQSYIMPDT (SEQ ID NO: 21) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
6. The antigen binding protein, variant or fragment thereof of any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof comprises a heavy chain variable region selected from the group consisting of: (i) a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHH (SEQ ID NO: 27) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto
(ii) a heavy chain variable region comprising: a CDR-H1 comprising GSSERFTS (SEQ ID NO: 29) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITNGGST (SEQ ID NO: 30) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising MAGTS (SEQ ID NO: 31) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto; and
(iii) a heavy chain variable region comprising: a CDR-H1 comprising GSIFSGND (SEQ ID NO: 25) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, a CDR-H2 comprising ITSGGST (SEQ ID NO: 26) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto, and a CDR-H3 comprising TNGRWSGDTYYAHL (SEQ ID NO: 33) or a sequence having at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identity thereto.
7. The antigen binding protein, variant or fragment thereof of any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof comprises a heavy chain variable domain and/or a light chain variable domain selected from the group consisting of:
(i) a heavy chain variable domain comprising
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLE WMGGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVY YCARSLGGRFRYWGQGTL (SEQ ID NO: 4 - 1 B6, 1 C1 , 1 C11 , 1 D4 and 1 H6) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(ii) a heavy chain variable domain comprising
QVQLQQSGPGLVKPSQTLSLTCAISGDSISSNSVAWNWIRQSPSRGL EWLGRTYYRSKWYSDYAISVKGRLDINPDTSKNQFSLQLNSVTPEDT AVYYCAREVEGSSYDAFDIWGQGTM (SEQ ID NO: 8) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions,
(iii) a light chain variable domain comprising
DVVMTQSPLSLPVTPGEPASISGRSSQSLLHSNGYNYLDWYLQKPGQ SPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCM QALQTPYTFGQGTK (SEQ ID NO: 12) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(iv) a light chain variable domain comprising EIVLTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQS PQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQ GLQSPWTFGQGTK (SEQ ID NO: 16) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(v) a light chain variable domain comprising
DVVMTQSPLSLPVTPGESASISCRSSQSLLHSNRYNYLDWYLQKPGQ SPQLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCM QALQTPYTFGQGTK (SEQ ID NO: 18) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(vi) a light chain variable domain comprising
DIQLTQSPSSLSASVGDRVTITCRASQSISDFLNWYQQKPGKAPKLLIY AASSLQTGVPSRFGGSGSGTEFTLTISSLQPEDLGTYYCQQSYIMPDT FGQGTK (SEQ ID NO: 22) or a fragment, variant or sequence thereof
at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(vii) a light chain variable domain comprising DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQ SPQLLIYLGSNRASGVPDRFSGSGSGTDFTLQISRVEAEDAGVYYCM QGLQTPYTFGQGTK (SEQ ID NO: 24 ) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(viii) a heavy chain variable domain comprising QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY GTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 28) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(ix) a heavy chain variable domain comprising QVQLQESGGGLVQPGGSLRLSCAASGSSERFTSVAWYRQAPGKERE LVAFITNGGSTRYTDPVKGRFTISRDNAKNTVYLQMNSLKAEDTAVYY CMAGTSWGQGTQ (SEQ ID NO: 32) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(x) a heavy chain variable domain comprising QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHLWGQGTQ (SEQ ID NO: 34) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(xi) a heavy chain variable domain comprising QVQLQESGGGLVQAGGSLRLSGADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY
CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 35) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(xii) a heavy chain variable domain comprising QVQLQESGGGLVQAGDSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 36) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions; and a heavy chain variable domain comprising QVQLVESGGGLVQAGGSLRLSCAASGSIFSGNDMSWYRQAPGKGLE LVAVITSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY CTNGRWSGDTYYAHHWGQGTL (SEQ ID NO: 37 ) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
8. The antigen binding protein, variant or fragment thereof of any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof comprises a heavy chain variable domain and a light chain variable domain selected from the group consisting of:
(i) a heavy chain variable domain comprising: EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain comprising DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSP QLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQT PYTFGQGTK (SEQ ID NO: 12) or a fragment, variant or sequence thereof
at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(ii) a heavy chain variable domain comprising:
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain comprising
EIVLTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSPQ LLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQGLQSP WTFGQGTK (SEQ ID NO: 16) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(iii) a heavy chain variable domain comprising:
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain comprising
DVVMTQSPLSLPVTPGESASISCRSSQSLLHSNRYNYLDWYLQKPGQSP QLLIYLGSNRASGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCMQALQT PYTFGQGTK (SEQ ID NO: 18) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions
(iv) a heavy chain variable domain comprising:
QVQLQQSGPGLVKPSQTLSLTCAISGDSISSNSVAWNWIRQSPSRGL EWLGRTYYRSKWYSDYAISVKGRLDINPDTSKNQFSLQLNSVTPEDT AVYYCAREVEGSSYDAFDIWGQGTM (SEQ ID NO: 8) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and
a light chain variable domain comprising
DIQLTQSPSSLSASVGDRVTITCRASQSISDFLNWYQQKPGKAPKLLIYAA SSLQTGVPSRFGGSGSGTEFTLTISSLQPEDLGTYYCQQSYIMPDTFGQG TK (SEQ ID NO: 22) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(v) a heavy chain variable domain comprising:
EVQLVQSGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWM GGIIPIFGTANYAQNFQGRVTMTADTSISTAYMELSSLRSEDTAVYYCARS LGGRFRYWGQGTL (SEQ ID NO: 4) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, and a light chain variable domain
DVVMTQSPLSLPVTPGEPASISCRSSQSLLHSNGYNYLDWYLQKPGQSP QLLIYLGSNRASGVPDRFSGSGSGTDFTLQISRVEAEDAGVYYCMQGLQT PYTFGQGTK (SEQ ID NO: 24) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
9. The antigen binding protein, variant or fragment thereof of any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof comprises a single domain heavy chain variable domain having a sequence:
(i) QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 28) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(ii) QVQLQESGGGLVQPGGSLRLSCAASGSSERFTSVAWYRQAPGKERE LVAFITNGGSTRYTDPVKGRFTISRDNAKNTVYLQMNSLKAEDTAVYY CMAGTSWGQGTQ (SEQ ID NO: 32) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(iii) QVQLQESGGGLVQPGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY CTNGRWSGDTYYAHLWGQGTQ (SEQ ID NO: 34) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(iv) QVQLQESGGGLVQAGGSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY GTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 35) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(v) QVQLQESGGGLVQAGDSLRLSCADSGSIFSGNDMAWYRRAPGVERE LVAVITSGGSTHYADSVKGRFTISRDNAQKTVYLQTNDLKPEDTAVYY GTNGRWSGDTYYAHHWGQGTQ (SEQ ID NO: 36) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(vi) QVQLVESGGGLVQAGGSLRLSCAASGSIFSGNDMSWYRQAPGKGLE LVAVITSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY CTNGRWSGDTYYAHHWGQGTL (SEQ ID NO: 37) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
10. The antigen binding protein, variant or fragment thereof of any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof comprises a light chain constant domain having a sequence:
(i) RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG NSQESVAEQDSKDSTYSLSSTLTLSKADYEKHKLYACEVTHQGLSSPVTK SFNRGEC (SEQ ID NO: 13) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions, or
(ii) RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSG NSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK SFSRGEC (SEQ ID NO: 14) or a fragment, variant or sequence thereof at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having two or three amino acids substitutions.
11 . The antigen binding protein, variant or fragment thereof according to any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof is an IgG antibody, in particular an lgG1 antibody.
12. The antigen binding protein, variant or fragment thereof according to any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof is a multi-specific antigen binding protein, variant or fragment thereof, such as a bispecific antibody.
13. The antigen binding protein, variant or fragment thereof according to claim 12, wherein the multi-specific antigen binding protein, variant or fragment thereof binds to an immune marker selected from the group consisting of CD3, NKG2D, CD4, CD8, CD16 and CD64.
1 . The antigen binding protein, variant or fragment thereof according to any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof is a bispecific T cell engager (BiTE).
15. The antigen binding protein, variant or fragment thereof of claim 14, wherein the bispecific T cell engager (BiTE) comprises an anti-EpCAM Heavy chain antibody variable region (i.e. VHH) or a single chain variable fragment (scFv).
16. The antigen binding protein, variant or fragment thereof according to any one of the preceding claims, wherein the antigen binding protein, variant or fragment thereof comprises a Fc region.
17. A polynucleotide encoding the antigen binding protein, variant or fragment thereof of any one of the preceding claims.
18. The polynucleotide of claim 17, wherein the heavy chain variable domain is encoded by a nucleotide sequence comprising:
(i) GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAAGTA CGCACAGAACTTCCAGGGCAGAGTCACCATGACCGCAGACACCTC CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(ii) CAGGTACAGCTGCAGCAGTCAGGTCCAGGGCTGGTGAAGCCCTC GCAGACCCTCTCACTCACCTGTGCCATCTCCGGGGACAGTATCTC TAGTAACAGTGTTGCTTGGAACTGGATCAGGCAGTCCCCATCGAG AGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAGTGGT ACAGTGATTATGCAATATCTGTGAAAGGTCGATTAGACATCAACCC AGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACT CGCGAGGACACGGCTGTGTATTATTGTGCAAGAGAAGTTGAGGGC AGCAGCTATGATGCTTTTGATATCTGGGGCCAAGGGACAATG (SEQ ID NO: 45) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions;
(iii) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG AGGGTCTGTGAGACTCTCCTGTGCAGAGTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACGGTATATCTGCAAACGAACGACTTGAAACCTGAGGACAC GGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTA
CTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 65) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(iv) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG GGGGTCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCTCCGAAAG ATTCACATCAGTGGCCTGGTACCGCCAGGCTCCAGGAAAGGAGC GCGAGTTGGTCGCATTTATTACTAATGGTGGTAGCACAAGATATAC AGACCCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAA
GAAGAGGGTGTATCTGCAAATGAACAGCGTGAAAGCTGAGGACAC GGCCGTCTATTATTGTATGGCGGGTACGTCCTGGGGCCAGGGGAC CCAG (SEQ ID NO: 69) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(v) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG AGGGTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC
AGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACA CGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTT ACTATGCCCATCTCTGGGGCCAGGGGACCCAG (SEQ ID NO: 71) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(vi) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGG GGGCTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC
AGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACA CGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTT ACTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 72) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(vii)CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGG GGACTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGT GGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGCG CGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATGC AGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCCA GAAGACCGTATATCTGCAAAGGAACGACCTGAAACCTGAGGAGAG GGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTA CTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 73) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(viii) CAGGTGCAGCTGGTGGAGTCTGGGGGAGGATTGGTGCAGG CTGGGGGCTCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCATCT TCAGTGGCAATGACATGTCCTGGTAGCGCCAGGCTCCAGGGAAG GGACTCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACATAC TATGCAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATT CCaAGAAcACCcTATATCTGCAAATGAACAGCCTGAGAGCTGAGGA GAGGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATA CTTACTATGCCCATCACTGGGGCCAGGGGACCCTG (SEQ ID NO: 74) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions; and/or the light chain variable domain is encoded by a nucleotide sequence comprising: (i) GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGG ACCAAG (SEQ ID NO: 49) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(ii) GAAATTGTGCTGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGTACAGATTT TACACTGAAAATAAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT TACTGCATGCAAGGTCTACAAAGTCCCTGGACGTTCGGCCAAGGG ACCAAG (SEQ ID NO: 53) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(iii) GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGTCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATAGATACAACTATTTGGATTGGTACGTGCAGAAGCGAG GGCAGTCTGCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCGAGGGG
ACCAAG (SEQ ID NO: 55) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(iv) GACATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAG GAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGTATTAGCG ACTTTTTAAATTGGTACCAGCAGAAACCAGGTAAAGCCCCGAAGCT CCTGATCTATGCTGCATCGAGTTTACAAACTGGGGTCCCCTCAAGA TTCGGTGGCAGTGGATCTGGGACAGAATTCACTCTCACCATAAGCA GTCTACAACCTGAAGATTTGGGAACTTATTACTGTCAACAGAGTTA CATTATGCCCGACACTTTTGGCCAGGGGACGAAA (SEQ ID NO: 59) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG
GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC
CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGCAAATCAGCAGAGTGGAGGCTGAGGATGCTGGGGTTTA TTACTGCATGCAAGGTCTACAGACTCCGTACACTTTTGGCCAGGG GACCAAG (SEQ ID NO: 61 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having I D- 20 nucleic acid substitutions.
19. The polynucleotide according to any one of claims 17 or 18, wherein the heavy chain and light chain variable domains are encoded by nucleotide sequences selected from the group consisting of:
(i) a heavy chain variable domain encoded by the nucleotide sequence comprising:
GAGGTCGAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTA GGCACAGAACTTCGAGGGCAGAGTCACCATGACGGCAGAGAGCTC CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG
CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC
CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGAAAATCAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGG ACGAAG (SEQ ID NO: 49) or a sequence at least 80%, 85%, 90%, 95%,
96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions
(ii) a heavy chain variable domain encoded by the nucleotide sequence comprising:
GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTA GGCACAGAACTTCGAGGGCAGAGTCACCATGACGGCAGAGAGCTC CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG
CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
GAAATTGTGCTGACTCAGTCTGCACTCTGCCTGCCCGTCACCCGTG GAGAGCCGGCCTCCATCTCCTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC GGGGGTCCCTGAGAGGTTGAGTGGCAGTGGATCAGGTACAGATTT TACACTGAAAATAAGCAGAGTGGAGGCTGAGGATGTTGGGGTTTAT
TACTGCATGCAAGGTCTACAAAGTCCCTGGACGTTCGGCCAAGGG ACCAAG (SEQ ID NO: 53) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions
(iii) a heavy chain variable domain encoded by the nucleotide sequence comprising:
GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTA CGCACAGAACTTCCAGGGCAGAGTCACCATGACCGCAGACACCTC
CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
GATGTTGTGATGACTCAGTCTCCACTCTCCCTGCCCGTCACCCCTG GAGAGTGGGCGTCCATCTCGTGCAGGTCTAGTCAGAGCCTCCTGC ATAGTAATAGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT
TACACTGAAAATGAGGAGAGTGGAGGCTGAGGATGTTGGGGTTTAT TACTGCATGCAAGCTCTACAAACTCCGTACACTTTTGGCCAGGGG ACCAAG (SEQ ID NO: 55) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions
(iv) a heavy chain variable domain encoded by the nucleotide sequence comprising:
GAGGTCCAGCTGGTGCAGTCTGGGGCTGAGGTGAAGAAGCCTGG GTCCTCGGTGAAGGTCTCCTGCAAGGCTTCTGGAGGCACCTTCAG CAGCTATGCTATCAGCTGGGTGCGACAGGCCCCTGGACAAGGGCT TGAGTGGATGGGAGGGATCATCCCTATCTTTGGTACAGCAAACTA CGCACAGAACTTCCAGGGCAGAGTCACCATGACCGCAGACACCTC CATAAGCACAGCCTACATGGAGCTGAGCAGCCTGAGATCTGAGGA CACGGCCGTGTATTACTGTGCGAGATCGTTGGGTGGGAGATTTCG CTACTGGGGCCAGGGAACCCTG (SEQ ID NO: 41 ) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
ATAGTAATGGATACAACTATTTGGATTGGTACCTGCAGAAGCCAG
GGCAGTCTCCACAGCTCCTGATCTATTTGGGTTCTAATCGGGCCTC CGGGGTCCCTGACAGGTTCAGTGGCAGTGGATCAGGCACAGATTT TACACTGCAAATCAGCAGAGTGGAGGCTGAGGATGCTGGGGTTTA TTACTGCATGCAAGGTCTACAGACTCCGTACACTTTTGGCCAGGG
GACCAAG (SEQ ID NO: 61) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having I D- 20 nucleic acid substitutions; and
(v) a heavy chain variable domain encoded by the nucleotide sequence comprising:
CAGGTACAGCTGCAGCAGTCAGGTCCAGGGCTGGTGAAGCCCTC
GCAGACCCTCTCACTCACCTGTGCCATCTCCGGGGACAGTATCTC
TAGTAACAGTGTTGCTTGGAAGTGGATCAGGGAGTCGCCATCGAG
AGGCCTTGAGTGGCTGGGAAGGACATACTACAGGTCCAAGTGGT
ACAGTGATTATGCAATATCTGTGAAAGGTCGATTAGACATCAACCC AGACACATCCAAGAACCAGTTCTCCCTGCAGCTGAACTCTGTGACT CCCGAGGACACGGCTGTGTATTATTGTGCAAGAGAAGTTGAGGGC AGCAGCTATGATGCTTTTGATATCTGGGGCCAAGGGACAATG
(SEQ ID NO: 45) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, and a light chain variable domain encoded by the nucleotide sequence comprising:
GACATCCAGTTGACCCAGTCTCCATCCTCCCTGTCTGCATCTGTAG GAGACAGAGTCACCATCACTTGCCGGGCAAGTCAGAGTATTAGCG ACTTTTTAAATTGGTACCAGCAGAAACCAGGTAAAGCCCCGAAGCT CCTGATCTATGCTGCATCGAGTTTACAAACTGGGGTCCCCTCAAGA TTCGGTGGCAGTGGATCTGGGACAGAATTCACTCTCACCATAAGCA GTCTACAACCTGAAGATTTGGGAACTTATTAGTGTCAACAGAGTTA CATTATGCCCGACACTTTTGGCCAGGGGACGAAA (SEQ ID NO: 59) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions.
20. The polynucleotide according to any one of claims 17 or 18, wherein the single domain heavy chain variable domain is encoded by a nucleotide sequence comprising
(i) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG AGGGTCTCTGAGACTCTCCTGTGCAGAGTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACGGTATATCTGCAAACGAACGACTTGAAACCTGAGGACAC GGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTA CTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 65) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(ii) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG GGGGTCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCTCCGAAAG ATTCACATCAGTGGCCTGGTACCGCCAGGCTCCAGGAAAGGAGC GGGAGTTGGTGGCATTTATTACTAATGGTGGTAGCACAAGATATAC AGACCCCGTGAAGGGCCGATTCACCATCTCCAGAGACAACGCCAA GAACACGGTGTATCTGCAAATGAACAGCCTGAAAGCTGAGGACAC GGCCGTCTATTATTGTATGGCGGGTACGTCCTGGGGCCAGGGGAC GCAG (SEQ ID NO: 69) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(ill) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGCTTGGTGCAGCCTGG AGGGTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACA CGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTT ACTATGCCCATCTCTGGGGCCAGGGGACCCAG (SEQ ID NO: 71) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(iv) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGG GGGCTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAG TGGCAATGACATGGCCTGGTACCGCCGGGCTCCAGGGGTGGAGC GCGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATG CAGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCC AGAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACA CGGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTT ACTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 72) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions,
(v) CAGGTGCAGCTGCAGGAGTCTGGGGGAGGATTGGTGCAGGCTGG GGACTCTCTGAGACTCTCCTGTGCAGACTCTGGAAGCATCTTCAGT GGCAATGACATGGCCTGGTACGGCCGGGCTCCAGGGGTGGAGCG CGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACACACTATGC AGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATGCCCA GAAGACCGTATATCTGCAAACGAACGACCTGAAACCTGAGGACAC GGCCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTA CTATGCCCATCACTGGGGCCAGGGGACCCAG (SEQ ID NO: 73) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(vi) GAGGTGGAGGTGGTGGAGTGTGGGGGAGGATTGGTGCAGGCTGG GGGCTCTCTGAGACTCTCCTGTGCAGCCTCTGGAAGCATCTTCAG TGGCAATGACATGTCCTGGTACCGCCAGGCTCCAGGGAAGGGACT CGAGTTGGTCGCGGTTATTACTAGCGGTGGTAGTACATACTATGC AGACTCCGTGAAGGGCCGATTCACCATCTCCAGAGACAATTCCaAG AAcACCcTATATCTGCAAATGAACAGCCTGAGAGCTGAGGACACGG CCGTGTATTACTGCACAAACGGAAGATGGTCAGGCGATACTTACT ATGCCCATCACTGGGGCCAGGGGACCCTG (SEQ ID NO: 74) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions.
21. The polynucleotide according to any one of claims 17 to 19, wherein the light chain constant domain is encoded by a nucleotide sequence comprising
(i) CGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATG AGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAA CTTCTATCCCAGAGAGGCCAAAGTACAGTGGAAGGTGGATAACGC CCTCCAATCGGGTAACTCCCAGGAGAGTGTCGCAGAGCAGGACAG CAAGGAGAGGAGCTACAGCCTCAGCAGCACCCTGACGCTGAGCAA AGCAGACTACGAGAAACACAAACTCTACGCCTGCGAAGTCACCCAT CAGGGCCTGAGCTCGCCCGTCACAAAGAGCTTCAACAGGGGAGA GTGT (SEQ ID NO: 50) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions, or
(II) CGAACTGTGGCTGCACCATCTGTCTTCATCTTCCCGCCATCTGATG AGCAGTTGAAATCTGGAACTGCCTCTGTTGTGTGCCTGCTGAATAA GTTCTATCCCAGAGAGGGCAAAGTACAGTGGAAGGTGGATAAGGC CGTCCAATCGGGTAACTGCCAGGAGAGTGTGACAGAGCAGGACAG CAAGGACAGCACCTACAGCCTCAGCAGCACCCTGACGCTGAGCAA AGCAGACTACGAGAAACACAAAGTCTACGCCTGCGAAGTCACCCA TCAGGGGCTGAGCTCGGCCGTGACAAAGAGCTTGAGGAGGGGAGA GTGT (SEQ ID NO: 51) or a sequence at least 80%, 85%, 90%, 95%, 96%, 97%, 98%, 99%, or 100% identical thereto and/or having 10-20 nucleic acid substitutions.
22. A vector expressing the polynucleotide of any one of claims 17 to 21 .
23. A host cell comprising the vector of claim 22.
24. A cell expressing/secreting the antigen binding protein, variant of fragment thereof according to any one of claims 1 to 16.
25. A cell expressing/secreting an immune cell engager which is specific to EpCAM.
26. The cell according to claim 25, wherein the immune cell engager is selected from the group comprising a T cell engager, an NK cell engager, a monocyte engager and a macrophage engager.
27. The cell of claims 25 or 26, wherein the immune cell engager is a bispecific T cell engager (BiTE), such as an inducible BITE, a non-inducible BITE or a constitutive expression BiTE, comprising the antigen binding protein, variant of fragment thereof of any one of claims 1 to 15.
28. The cell of any one of claims 24 to 27, wherein the cell is an immune cell, for example selected from the group comprising a T cell, a macrophage, a monocyte, and an NK cell.
29. The cell of any one of claims 24 to 28, wherein the immune cell is a T-cell, in particular a CAR T-cell.
30. The cell of any one of claims 24 to 27, wherein the cell is a stem cell, for example selected from the group comprising a mesenchymal stem cell, a neural stem cell and a pluripotent stem cell, such as an induced pluripotent stem cell (IPSC).
31 . A composition comprising the antigen binding protein, variant or fragment thereof of any one of claims 1 to 16 and/or the cell of any one of claims 24 to 30.
32. An antigen binding protein, variant or fragment thereof of any one of claims 1 to 16, cell of any one of claims 24 to 30, or a composition of claim 31 for use in treatment of a disease.
33. A method of treating a disease in a subject in need thereof, comprising administering to the subject an antigen binding protein, variant or fragment thereof of any one of claims 1 to 16, a cell according to any one of claims 24 to 30 or a composition of claim 31 .
34. Use of the antigen binding protein, variant or fragment thereof of any one of claims 1 to 16, a cell according to any one of claims 24 to 30 or the composition of 31 in the manufacture of a medicament for preventing and/or treating a disease.
35. The method, use, antigen binding protein, variant or fragment thereof for use, cell or composition for use according to any one of claims 32 to 34, wherein the disease is a proliferative disease such as a tumor or cancer. 36. A method of diagnosis / determining the prognosis or presence of a solid tumor originating from epithelium comprising detecting the expression of high EpCAM on the solid tumor using the antigen binding protein, variant or fragment thereof of any one of claims 1 to 16 or a composition of claim 31 .
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| SG10202301602U | 2023-06-07 | ||
| SG10202301602U | 2023-06-07 |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| WO2024253595A1 true WO2024253595A1 (en) | 2024-12-12 |
Family
ID=93794573
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/SG2024/050383 Pending WO2024253595A1 (en) | 2023-06-07 | 2024-06-07 | MULTISPECIFIC ANTIGEN BINDING PROTEIN AGAINST EpCAM |
Country Status (1)
| Country | Link |
|---|---|
| WO (1) | WO2024253595A1 (en) |
Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2022018262A1 (en) * | 2020-07-24 | 2022-01-27 | Cellectis S.A. | T-cells expressing immune cell engagers in allogenic settings |
| US20220267462A1 (en) * | 2019-05-14 | 2022-08-25 | Harpoon Therapeutics, Inc. | Epcam binding proteins and methods of use |
-
2024
- 2024-06-07 WO PCT/SG2024/050383 patent/WO2024253595A1/en active Pending
Patent Citations (2)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20220267462A1 (en) * | 2019-05-14 | 2022-08-25 | Harpoon Therapeutics, Inc. | Epcam binding proteins and methods of use |
| WO2022018262A1 (en) * | 2020-07-24 | 2022-01-27 | Cellectis S.A. | T-cells expressing immune cell engagers in allogenic settings |
Non-Patent Citations (4)
| Title |
|---|
| EDELINE JULIEN, HOUOT ROCH, MARABELLE AURÉLIEN, ALCANTARA MARION: "CAR-T cells and BiTEs in solid tumors: challenges and perspectives", JOURNAL OF HEMATOLOGY & ONCOLOGY, BIOMED CENTRAL LTD, LONDON UK, vol. 14, no. 1, 1 December 2021 (2021-12-01), London UK , XP093250712, ISSN: 1756-8722, DOI: 10.1186/s13045-021-01067-5 * |
| HAO S., INAMDAR V.V., SIGMUND E.C., ZHANG F., STEPHAN S.B., WATSON C., WEAVER S.J., NIELSEN U.B., STEPHAN M.T.: "BiTE secretion from in situ-programmed myeloid cells results in tumor-retained pharmacology", JOURNAL OF CONTROLLED RELEASE, ELSEVIER, NL, vol. 342, 1 February 2022 (2022-02-01), NL , pages 14 - 25, XP093250704, ISSN: 0168-3659, DOI: 10.1016/j.jconrel.2021.12.029 * |
| HOSKING MARTIN, SHRESTHA BISHWAS, BOYETT MEGAN, SHIRINBAK SOHEILA, GENTILE ANGELA, SUNG ERIC, PAN YIJIA, LEE TOM, OROURKE JASON, S: "116 Multi-antigen targeting of heterogenous solid tumors using CAR T cells secreting bi-specific T-cell engagers", REGULAR AND YOUNG INVESTIGATOR AWARD ABSTRACTS, BMJ PUBLISHING GROUP LTD, 1 November 2020 (2020-11-01), pages A71 - A72, XP093250150, DOI: 10.1136/jitc-2020-SITC2020.0116 * |
| KEBENKO MAXIM, GOEBELER MARIE-ELISABETH, WOLF MARTIN, HASENBURG ANNETTE, SEGGEWISS-BERNHARDT RUTH, RITTER BARBARA, RAUTENBERG BEAT: "A multicenter phase 1 study of solitomab (MT110, AMG 110), a bispecific EpCAM/CD3 T-cell engager (BiTE®) antibody construct, in patients with refractory solid tumors", ONCOIMMUNOLOGY, pages e1450710, XP093250708, ISSN: 2162-402X, DOI: 10.1080/2162402X.2018.1450710 * |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| US20210301028A1 (en) | Composition and methods for anti-tnfr2 antibodies | |
| US20180305464A1 (en) | Pdl-1 antibody, pharmaceutical composition thereof, and uses thereof | |
| WO2022174813A1 (en) | Anti-gprc5d×bcma×cd3 trispecific antibody and use thereof | |
| JP2023538945A (en) | Anti-ROR1 antibodies and related bispecific binding proteins | |
| US12428493B2 (en) | Antibodies that bind PSMA and gamma-delta T cell receptors | |
| KR20180030856A (en) | Human CD3 binding antibody | |
| JP2018532401A (en) | Novel anti-mesothelin antibodies and compositions containing them | |
| EP3632932A1 (en) | Anti-cd40 antibody, antigen binding fragment thereof and medical use thereof | |
| KR20230157933A (en) | Antibodies that bind to the gamma-delta T cell receptor | |
| TW202030206A (en) | Novel bispecific cd3/cd20 polypeptide complexes | |
| CN115093481A (en) | Novel bispecific CD3/CD20 polypeptide complex | |
| EP4223777A1 (en) | Anti-cd3 antibody and uses thereof | |
| CN114907479A (en) | Anti-CD112R antibody and use thereof | |
| US20250340631A1 (en) | Cldn18.2-targeting antibody, bispecific antibody and use thereof | |
| CA3226700A1 (en) | Agents encoding cldn6 and cds binding elements for treating cldn6-positive cancers | |
| WO2021143914A1 (en) | Activated anti-ox40 antibody, production method therefor and application thereof | |
| CN118176217A (en) | Novel antibody-cytokine fusion protein and preparation method and use thereof | |
| WO2025041097A1 (en) | Il-18 polypeptides fused to immune cell antigen specific binding polypeptides and uses thereof | |
| WO2024253595A1 (en) | MULTISPECIFIC ANTIGEN BINDING PROTEIN AGAINST EpCAM | |
| US20230265202A1 (en) | Antibody constructs binding 4-1bb and folate receptor alpha and uses thereof | |
| CN118339179A (en) | Modified proteins or polypeptides | |
| CN116438198A (en) | Antibodies capable of binding ROR2 and bispecific antibodies binding ROR2 and CD3 | |
| CN115698066A (en) | Anti-CD47 antibodies and uses thereof | |
| CN113975385A (en) | Novel bispecific anti-CD 3/CD20 polypeptide complex formulations | |
| WO2022116079A1 (en) | Humanized anti-ceacam5 antibody, and preparation method therefor and use thereof |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| 121 | Ep: the epo has been informed by wipo that ep was designated in this application |
Ref document number: 24819698 Country of ref document: EP Kind code of ref document: A1 |