WO2024110385A1 - Derivatisation agent for laser desorption ionization mass spectrometry - Google Patents
Derivatisation agent for laser desorption ionization mass spectrometry Download PDFInfo
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- WO2024110385A1 WO2024110385A1 PCT/EP2023/082387 EP2023082387W WO2024110385A1 WO 2024110385 A1 WO2024110385 A1 WO 2024110385A1 EP 2023082387 W EP2023082387 W EP 2023082387W WO 2024110385 A1 WO2024110385 A1 WO 2024110385A1
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
- G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
- G01N33/6848—Methods of protein analysis involving mass spectrometry
- G01N33/6851—Methods of protein analysis involving laser desorption ionisation mass spectrometry
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/74—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving hormones or other non-cytokine intercellular protein regulatory factors such as growth factors, including receptors to hormones and growth factors
- G01N33/743—Steroid hormones
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2560/00—Chemical aspects of mass spectrometric analysis of biological material
Definitions
- the invention relates to a derivatisation agent, preferably derivatisation agent for analytes intended to be analysed via LDI-MS, comprising a structural element of formula (I) C- L1 -Z - (L2) p - X, wherein C is a chromophore having an absorption maximum in the range of from 280 to 400 nm; Z is a charged unit comprising at least one permanently charged moiety; X is a reactive group; LI, L2 are each a linker unit; and p is either zero or 1.
- a derivatisation agent preferably derivatisation agent for analytes intended to be analysed via LDI-MS, comprising a structural element of formula (I) C- L1 -Z - (L2) p - X, wherein C is a chromophore having an absorption maximum in the range of from 280 to 400 nm; Z is a charged unit comprising at least one permanently charged moiety; X is
- a second aspect of the invention is related to a kit comprising the derivatisation agent according to the first aspect.
- the invention is directed to a use of the derivatisation agent according to the first aspect for the mass spectrometric determination of an analyte molecule, wherein the mass spectrometric determination is LDI-MS.
- a fourth aspect of the invention relates to a conjugate of a derivatisation agent according to the first aspect and an analyte, wherein the conjugate has the structure of formula (II) C- LI - Z - (L2) p - Xa - Ya - A, wherein C, LI, L2, p, Z and N are as defined in the context of the first aspect;
- Xa is a remainder of a reactive group X as defined in the context of the first aspect;
- A is the analyte and Ya is the remainder of a reactive group Y bound to the analyte A, which has reacted with the reactive group X of the derivatisation agent thus forming a covalent bound between Xa and Ya.
- a fifth aspect of the invention is related to a method for the mass spectrometric determination of an analyte molecule comprising the steps: (a) providing an analyte of interest; (b) providing a derivatisation agent comprising a structure of formula (I) as defined in the context of the first aspect; (c) reacting the analyte provided according to (a) with the derivatisation agent provided according to (b), whereby a conjugate of the analyte and the derivatisation agent is formed, and (d) subjecting the conjugate formed in (c) to a mass spectrometric analysis, wherein the mass spectrometric analysis is preferably LDI-MS.
- Mass spectrometry is a widely used technique for the qualitative and quantitative analysis of chemical substances ranging from small molecules to macromolecules. In general, it is a very sensitive and specific method, allowing even for the analysis of complex biological, e.g. environmental or clinical samples. However, for several analytes, especially if analyzed from complex biological matrices such as serum, sensitivity of the measurement remains an issue. Often MS is combined with chromatographic techniques, particularly gas and liquid chromatography such as e.g. HPLC. Here, the analyted molecule of interest is separated chromatographically and is individually subjected to mass spectrometric analysis (Higashi et al. (2016) J. of Pharmaceutical and Biomedical Analysis 130 p. 181-190).
- reagents comprising charged units and neutral loss units which are combined in a single functional unit (e.g. WO 2011/091436 Al); other reagents for introducing neutral loss units and charged units are known, for example, from WO 2020/020850 Al.
- Other reagents comprising separate units are structurally relatively large which effects the general workflow of sample preparation and the MS measurement (Rahimoff et al. (2017) J. Am. Chem. Soc. 139(30), p. 10359-10364).
- Known derivatisation reagents are for example Cookson-type reagents, Amplifex Diene, Amplifex Keto, Girard T, Girard P. All of these bear disadvantages due to often insufficient labelling efficiencies, generation of structural isomers due to coupling chemistry, non-optimal ionization efficiencies, disadvantages for chromatographic separation after coupling, non-optima fragmentation behaviour due to many fragmentation pathways and need for high collision energies.
- a derivatisation reagents which allows for a sensitive detection of analytes from complex biological matrices as well as exhibiting a chemical structure which does not negatively influence the MS measurement workflow. This is of particular importance in a random-access, high-throughput MS set up, wherein several different analytes exhibiting different chemical properties have to be measured in a short amount of time.
- Chemical derivatisation of an analyte of interest can be used to enhance the detection sensitivity in mass spectrometry applications.
- charged (i) or chargeable (ii) compounds are used to produce a (i) permanently charged or (ii) chargeable derivatized analyte in order to improve the mass spec response/sensitivity.
- Most of these reagents aime to enhance the ESI response, but they are not designed to generate a particular product ion by CID for MS/MS applications.
- derivatisation reagents were developed carrying a structure suitable for MS/MS detection. In general numerous derivatisation reagents are available for liquid chromatography based mass spectrometry (i.e.
- the problem underlying the present invention was the need for a permanently charged and chromophoric derivatisation reagent having a suitable neutral loss site.
- a derivatisation agent preferably a derivatisation agent for analytes intended to be analysed via laser desorption ionization mass spectrometry (LDI-MS), comprising a structural element of formula (I)
- C is a chromophore having an absorption maximum in the range of from 280 to 400 nm;
- Z is a charged unit comprising at least one permanently charged moiety
- X is a reactive group
- LI, L2 are each a linker unit; and p is either zero or 1.
- the derivatisation agent according to the present invention provides a solution for challenging high-sensitive measurements, preferably but not limited, in the field of laser desorption ionization (LDI)-based mass spectrometry (MS).
- the advantage of the derivatisation agent is an improved sensitivity for LDI-MS applications.
- the term “LDI-MS” comprises (MA)LDLMS, preferably (MA)LDI-MS/MS and (SA)LDLMS, preferably (SA)LDI-MS/MS, wherein “MALDI” (matrix- assisted laser desorption ionization) as well as “SALDI” (surface-assisted laser desorption ionization) are known and are also explained in more detail below in the section related to the third aspect of the invention.
- the derivatisation agent is distinguished by its chemical structural concept as well as its working principal from other reagents/solutions known in the art.
- the derivatisation agent carries a suitable chromophore, which enables an efficient energy transfer during LDI.
- the derivatisation agent adds a sufficient large molecular weight onto an analyte of interest, wherein the weight addition results in a sufficient mass shift beyond the high noise background of biological samples in the lower molecular weight region.
- Percentages, concentrations, amounts, and other numerical data may be expressed or presented herein in a “range” format. It is to be understood that such a range format is used merely for convenience and brevity and thus should be interpreted flexibly to include not only the numerical values explicitly recited as the limits of the range, but also to include all the individual numerical values or sub-ranges encompassed within that range as if each numerical value and sub-range is explicitly recited. As an illustration, a numerical range of "from 4 to 20 %" should be interpreted to include not only the explicitly recited values of 4 % to 20 %, but to also include individual values and sub-ranges within the indicated range. Thus, included in this numerical range are individual values such as 4, 5, 6, 7, 8, 9, 10, ...
- MS Mass Spectrometry
- MS is a methods of filtering, detecting, and measuring ions based on their mass-to-charge ratio, or "m/z”.
- MS technology generally includes (1) ionizing the compounds to form charged compounds; and (2) detecting the molecular weight of the charged compounds and calculating a mass-to-charge ratio.
- the compounds may be ionized and detected by any suitable means.
- a "mass spectrometer” generally includes an ionizer and an ion detector.
- one or more molecules of interest are ionized, and the ions are subsequently introduced into a mass spectrographic instrument where, due to a combination of magnetic and electric fields, the ions follow a path in space that is dependent upon mass ("m") and charge ("z").
- ionization or “ionizing” refers to the process of generating an analyte ion having a net electrical charge equal to one or more electron units. Negative ions are those having a net negative charge of one or more electron units, while positive ions are those having a net positive charge of one or more electron units.
- the MS method may be performed either in "negative ion mode", wherein negative ions are generated and detected, or in "positive ion mode” wherein positive ions are generated and detected.
- “Tandem mass spectrometry” or “MS/MS” involves multiple steps of mass spectrometry selection, wherein fragmentation of the analyte occurs in between the stages.
- ions are formed in the ion source and separated by mass-to-charge ratio in the first stage of mass spectrometry (MS 1). Ions of a particular mass-to-charge ratio (precursor ions or parent ion) are selected and fragment ions (or daughter ions) are created by collision-induced dissociation, ionmolecule reaction, or photodissociation. The resulting ions are then separated and detected in a second stage of mass spectrometry (MS2).
- MS2 mass-to-charge ratio
- LDMI Laser desorption ionization
- Mass spectrometry is thus, an important method for the accurate mass determination and characterization of analytes, including but not limited to low- molecular weight analytes, peptides, polypeptides or proteins. Its applications include the identification of proteins and their post-translational modifications, the elucidation of protein complexes, their subunits and functional interactions, as well as the global measurement of proteins in proteomics. De novo sequencing of peptides or proteins by mass spectrometry can typically be performed without prior knowledge of the amino acid sequence.
- Mass spectrometric determination may be combined with additional analytical methods including chromatographic methods such as gas chromatography (GC), liquid chromatography (LC), particularly HPLC, and/or ion mobility-based separation techniques.
- chromatographic methods such as gas chromatography (GC), liquid chromatography (LC), particularly HPLC, and/or ion mobility-based separation techniques.
- chromatographic methods such as gas chromatography (GC), liquid chromatography (LC), particularly HPLC, and/or ion mobility-based separation techniques.
- chromatographic methods such as gas chromatography (GC), liquid chromatography (LC), particularly HPLC, and/or ion mobility-based separation techniques.
- LC liquid chromatography
- ion mobility-based separation techniques ion mobility-based separation techniques.
- chemical specis suitable to be analysed via mass spectrometry i.e. analytes, can be any kind of molecule present in a living organism, include but are not limited to nucleic acid (e.g.
- DNA, mRNA, miRNA, rRNA etc. DNA, mRNA, miRNA, rRNA etc.), amino acids, peptides, proteins (e.g. cell surface receptor, cytosolic protein etc.), metabolite or hormones (e.g. testosterone, estrogen, estradiol, etc.), fatty acids, lipids, carbohydrates, steroids, ketosteroids, secosteroids (e.g. Vitamin D), molecules characteristic of a certain modification of another molecule (e.g. sugar moieties or phosphoryl residues on proteins, methyl-residues on genomic DNA) or a substance that has been internalized by the organism (e.g. therapeutic drugs, drugs of abuse, toxin, etc.) or a metabolite of such a substance.
- a substance that has been internalized by the organism e.g. therapeutic drugs, drugs of abuse, toxin, etc.
- Such analyte may serve as a biomarker.
- biomarker refers to a substance within a biological system that is used as an indicator of a biological state of said system.
- Most sample workflows in MS further include sample preparation and/or enrichment steps, wherein e.g. the analyte(s) of interest are separated from the matrix using e.g. gas or liquid chromatography.
- the absorption maximum of the chromophore C is an adsorption maximum determined by UV/VIS spectroscopy.
- the absorption maximum of the chromophore C is in the range of from 290 to 380 nm, more preferably in the range of from 300 to 360 nm, more preferably in the range of from 305 to 330 nm.
- the chromophore C has a structure of formula (C) wherein R 1 , R 2 , R 3 , R 4 , R 5 are independently selected from the group of hydrogen atom; hydroxyl group; NR’K 7 group, wherein R x and R y are independently a hydrogen atom or a Cl to C5 alkyl group; Cl to C5 alkyl, C5 to CIO (hetero)aryl and -O-Cl to C3 alkoxy group; and R 6 is either none (i.e.
- R 1 , R 2 , R 3 , R 4 , R 5 are independently selected from the group of hydrogen atom, hydroxyl group, NR R y group, wherein R x and R y are independently a hydrogen atom or a Cl to C5 alkyl group, and -O-Cl to C3 alkoxy group.
- R 1 , R 2 , R 3 , R 4 , R 5 are independently selected from the group of hydrogen atom, hydroxyl group, NI R 7 group, wherein R x and R y are independently a hydrogen atom or a Cl to C5 alkyl group and -O-Cl to C3 alkoxy group, with the condition that at least one of R 1 , R 2 , R 3 , R 4 , R 5 is either a hydroxyl group or a -O-Cl to C3 alkoxy group.
- the chromophore C has a structure of formula (Cl), (C2) or (C3): wherein R 1 , R 2 , R 3 , R 4 , are independently selected from the group of hydrogen atom, hydroxyl group NR’TC group, wherein R x and R y are independently a hydrogen atom or a C 1 to C5 alkyl group, Cl to C5 alkyl, C5 to CIO (hetero)aryl and -O-Cl to C3 alkoxy group.
- R 1 , R 2 , R 3 , R 4 , R 5 are independently selected from the group of hydrogen atom, hydroxyl group, NR R y group, wherein R x and R y are independently a hydrogen atom or a Cl to C5 alkyl group, and -O-Cl to C3 alkoxy group.
- R 1 , R 2 , R 3 , R 4 , R 5 are independently selected from the group of hydrogen atom, hydroxyl group, NI R 7 group, wherein R x and R y are independently a hydrogen atom or a Cl to C5 alkyl group, and -O-Cl to C3 alkoxy group, with the condition that at least one of R 1 , R 2 , R 3 , R 4 , R 5 is either a hydroxyl group or a -O-Cl to C3 alkoxy group.
- the chromophore C has a structure of formula (Cl), wherein R 1 and R 4 are both a methoxy group and R 3 is a hydroxyl group (Cl with these residues R 2 , R 3 and R 4 being the remainder of sinapinic acid).
- the chromophore C has a structure of formula (C2), wherein R 2 and R 4 are both a hydroxyl group (C2 with these residues R 2 , R 4 being the remainder of 2,5-dihy- droxy benzoic acid).
- the chromophore C has a structure of formula (C3), wherein R 3 is a hydroxyl group (C3 with this residue R 3 being the remainder of alpha-cyano-4-hydroxy-cinamix acid).
- the linker LI is selected from the group consisting of (C1-C5 alkylene-O-) m group with m being an integer in the range of from 1 to 10, Cl to C20 alkylene group, Cl to C20 alkylene group - heteroaryl group and (C1-C5 alkylene)-O- (C1-C5 alkylene) group, optionally connected to or intersected by a unit selected from the group consisting of (hetero)aryl group, N2, NO, NO2, S2, SO, SO2, CO, and CO2, said unit being preferably, if present, a heteroaryl group, more preferably from triazol, phenyltriazol, tetrazol and phe- nyltetrazol.
- a “heteroaryl” is preferably a Cl to CIO heteroaryl with at least one heteroatom as part of the ring structure, wherein the at least one heteroatom is preferably selected from N, O and S, more preferably the heteroaryl is selected from the group consisting of triazole, tetrazole, tetrazine, oxadiazole, thiadiazole and any hydrogenated derivative thereof, more preferably from the group consisting of 1,2,3- triazole, 1,2,4-triazole, 1,4,5-triazole, 3,4,5-triazole, 1,2,3,4-tetrazole, 2,3,4,5-tetrazole, 2, 3, 5, 6 tetrazole and 1,2, 4, 5 tetrazine.
- the linker LI has a structure (Lla) q -(Llb) r -(Llc) s , wherein q, r, s are each zero or 1, with the condition that at least one of q, r, s is 1; Lla being selected from the group consisting of (C1-C5 alkylene-O-) m group with m being an integer in the range of from 1 to 10, Cl to CIO alkylene group; Lib being a unit selected from the group consisting of N2, NO, NO2, S2, SO, SO2, CO, CO2, triazol, phenyltriazol, tetrazol and phenyltetrazol, wherein the unit is preferably a triazol or a tetrazol, more preferably the unit N is a triazol, more preferably the unit N is a 1,2,3 triazol ring, which is bound to the linker Lla, if present, via a
- the charged unit Z is positively or negatively charged, preferably positively charged.
- the charged unit Z is positively charged and is preferably a tetraalkyl ammonium group, more preferably a -CH2N + (CH3)2CH2- group.
- the charged unit Z is negatively charged, wherein the negatively charged unit Z is preferably selected from the group consisting of a phosphate, sulphate, sulphonate and carboxylate.
- the linker L2 comprises 1 to 10 C atoms and optionally one or more heteroatom(s).
- the reactive group X is selected from the group consisting of carbonyl reactive unit, diene reactive unit, hydroxyl reactive unit, amino reactive unit, imine reactive unit, thiol reactive unit, diol reactive unit, phenol reactive unit, epoxide reactive unit, disulfide reactive unit, and azido reactive unit.
- the reactive unit X is a carbonyl reactive unit, which is capable of reacting with any type of molecule having a carbonyl group.
- the carbonyl reactive unit is preferably selected from the group consisting of carboxyl reactive unit, keto reactive unit, aldehyde reactive unit, anhydride reactive unit, carbonyl ester reactive unit, and imide reactive unit.
- the carbonyl-reactive unit may have either a super-nucleophilic N atom strengthened by the a-effect through an adjacent O or N atom NH2-N/O or a dithiol molecule.
- the carbonyl-reactive unit is selected from the group:
- a hydrazine unit e.g. a H2N-NH-, or H2N-NR a - unit, wherein R a is aryl, aryl containing 1 or more heteroatoms or Cl -4 alkyl, particularly Cl or C2 alkyl, optionally substituted e.g. with halo, hydroxyl, and/or Cl -3 alkoxy,
- a hydrazide unit in particular a carbo-hydrazide or sulfo-hydrazide unit, in particular a H2N- NH-C(O)-, or H 2 N-NR b -C(O)- unit, wherein R b is aryl, aryl containing 1 or more heteroatoms or Cl -4 alkyl, particularly Ci or C2 alkyl, optionally substituted e.g. with halo, hydroxyl, and/or Cl -3 alkoxy,
- a hydroxylamino unit e.g. a H2N-O- unit
- a dithiol unit particularly a 1, 2-dithiol or 1, 3-dithiol unit.
- the carboxyl reactive units reacts with carboxyl groups on an analyte molecule.
- the carboxyl reactive unit is selected from the group consisting of a diazo unit, an alkylhalide, amine, and hydrazine unit.
- the reactive unit X is a diene reactive unit, which is capable of reacting with an analyte comprising a diene group.
- the diene reactive unit is selected from the group consisting of Cookson-type reagents, e.g.1,2,4- triazolin-3, 5-diones, which are capable to act as a dienophile.
- the reactive unit X is a hydroxyl reactive unit, which is capable of reacting with an analyte comprising a hydroxyl group.
- the hydroxyl reactive units is selected from the group consisting of sulfonylchlorides, activated carboxylic esters (NHS, or imidazolide), and fluoro aromates/ heteroaromates capable for nucleophilic substitution of the fluorine (T. Higashi J Steroid Biochem Mol Biol. 2016 Sep;162:57-69).
- the reactive unit X is a diol reactive unit, which reacts with an diol group on an analyte molecule.
- the 1 ,2 diol reactive unit comprises boronic acid.
- diols can be oxidised to the respective ketones or aldehydes and then reacted with ketone/aldehyde- reactive units X.
- the amino reactive unit reacts with amino groups on an analyte molecule.
- the amino-reactive unit is selected from the group consisting of active ester group such as N-hydroxy succinimide (NHS) ester or sulfo- NHS ester, pentafluoro phenyl ester, cabonylimidazole ester, quadratic acid esters, a hydroxybenzotriazole (HOBt) ester, l-hydroxy-7-azabenzotriazole (HO At) ester, and a sulfonylchloride unit.
- active ester group such as N-hydroxy succinimide (NHS) ester or sulfo- NHS ester
- pentafluoro phenyl ester pentafluoro phenyl ester
- cabonylimidazole ester cabonylimidazole ester
- quadratic acid esters a hydroxybenzotriazole (HOBt) ester
- HOBt hydroxybenzotriazole
- HO At l-hydroxy-7-aza
- the thiol reactive unit reacts with an thiol group on an analyte molecule.
- the phenol reactive unit reacts with phenol groups on an analyte molecule.
- the phenol-reactive unit is selected from the group consisting of active ester unit such as N-hydroxy succinimide (NHS) ester or sulfo- NHS ester, pentafluoro phenyl ester, carbonylimidazole ester, quadratic acid esters, a hydroxybenzotriazole (HOBt) ester, l-hydroxy-7-azabenzotriazole (HO At) ester, and a sulfonylchloride unit.
- active ester unit such as N-hydroxy succinimide (NHS) ester or sulfo- NHS ester
- pentafluoro phenyl ester carbonylimidazole ester
- quadratic acid esters a hydroxybenzotriazole (HOBt) ester
- HOBt hydroxybenzotriazole
- HO At l-hydroxy-7-azabenzotri
- Phenol groups present on an analyte molecule can be reacted with triazole dione via a reaction (H. Ban et al J. Am. Chem. Soc., 2010, 132 (5), pp 1523- 1525) or by diazotization or alternatively by ortho nitration followed by reduction to an amine which could then be reacted with an amine reactive reagent.
- the reactive unit X is a epoxide reactive unit, which is capable of reacting with an analyte comprising a epoxide group.
- the epoxide reactive unit is selected from the group consisting of amino, thiol, super- nucleophilic N atom strengthened by the a-effect through an adjacent O or N atom NH2-N/O molecule.
- the epoxide reactive unit is selected from the group:
- a hydrazine unit e.g. a H2N-NH-, or H2N-NR a - unit, wherein R a is aryl, aryl containing 1 or more heteroatoms or Cl -4 alkyl, particularly Ci or C2 alkyl, optionally substituted e.g. with halo, hydroxyl, and/or Cl -3 alkoxy,
- a hydrazide unit in particular a carbo-hydrazide or sulfo-hydrazide unit, in particular a H2N- NH-C(O)-, or H2 N-NR b -C(O)- unit, wherein R b is aryl, aryl containing 1 or more heteroatoms or Ci-4 alkyl, particularly Ci or C2 alkyl, optionally substituted e.g. with halo, hydroxyl, and/or Cl -3 alkoxy, and
- a hydroxylamino unit e.g. a H2N-O- unit.
- the reactive unit X is a disulfide reactive unit, which is capable of reacting with an analyte comprising a disulfide group.
- the disulfide reactive unit is selected from the group consisting of thiol.
- disulfide group can be reduced to the respective thiol group and then reacted with thiol reactive units X.
- the reactive unit X is a azido reactive unit which reacts with azido groups on an analyte molecule.
- the azido-reactive unit reacts with azido groups through azide-alkyne cycloaddition.
- the azido-reactive unit is selected from the group consisting of alkyne (alkyl or aryl), linear alkyne or cyclic alkyne. The reaction between the azido and the alkyne can proceed with or without the use of a catalyst.
- the azido group can be reduced to the respective amino group and then reacted with amino reactive units X.
- a second aspect of the present invention is directed to a kit comprising the derivatisation agent according to the first aspect. All details, embodiment, and preferred embodiments as disclosed above in the section related to the first aspect apply also for the kit of the second aspect.
- kits is any manufacture (e.g. a package or container) comprising at least one reagent, e.g., a medicament for treatment of a disorder, or a probe for specifically detecting a biomarker gene or protein of the invention.
- the kit is preferably promoted, distributed, or sold as a unit for performing the use and/or the method of the present invention as described below in the sections related to the third and the fourth aspects of the invention.
- a kit may further comprise carrier means being compartmentalized to receive in close confinement one or more container means such as vials, tubes, and the like
- each of the container means comprises one of the separate elements to be used in the method of the first aspect.
- Kits may further comprise one or more other containers comprising further materials including but not limited to buffers, diluents, filters, needles, syringes, and package inserts with instructions for use.
- a label may be present on the container to indicate that the composition is used for a specific application, and may also indicate directions for either in vivo or in vitro use.
- the computer program code may be provided on a data storage medium or device such as a optical storage medium (e.g., a Compact Disc) or directly on a computer or data processing device.
- the kit may, comprise standard amounts for the biomarkers as described elsewhere herein for calibration purposes.
- a “package insert” is used to refer to instructions customarily included in commercial packages of therapeutic products or medicaments, that contain information about the indications, usage, dosage, administration, contraindications, other therapeutic products to be combined with the packaged product, and/or warnings concerning the use of such therapeutic products or medicaments, etc.
- the invention is directed to a use of a derivatisation agent according to the first aspect for the mass spectrometric determination of an analyte molecule, wherein the mass spectrometric determination is laser desorption ionization mass spectrometry (LDI-MS), preferably is (MA)LDI-MS, more preferably (MA)LDI-MS/MS, or (SA)LDI-MS, more preferably (SA)LDI- MS/MS.
- LDI-MS laser desorption ionization mass spectrometry
- LPI matrix-assisted laser desorption ionization
- MALDI matrix-assisted laser desorption ionization
- Matrix materials and supports such as metal, especially steel, plates are known to the skilled person, the same applies for the conditions to be applied.
- the matrix typically consists of crystallized molecules, of which the three most commonly used are sinapinic acid, alpha-cyano- 4-hydroxycinnamic acid (alpha-CHCA, alpha-cyano or alpha-matrix) and 2,5-dihydroxybenzoic acid DHB).
- MALDI techniques typically employ the use of UV lasers such as nitrogen lasers (337 nm) and frequency-tripled and quadrupled Nd:YAG lasers (355 nm and 266 nm respectively).
- Infrared laser wavelengths used for infrared MALDI include the 2.94 pm Er:YAG laser, mid-IR optical parametric oscillator, and 10.6 pm carbon dioxide laser.
- SALDI Surface-assisted laser desorption ionization
- SALDI is a soft laser desorption technique without using matrix molecules but rather using a medium that absorbs energy from a laser and then transfers the energy to the target sample, wherein the active surface of the specific substrate plays the decisive role.
- Important substrates are solid surfaces of porous silicon.
- the porous silicon represented the first matrix-free SALDI surface analysis allowing for facile detection of intact molecular ions.
- SA multitude of different surfaces are known to work as SALDI substrates. Based on the elemental composition, the majority of the SALDI substrates reported in the literature can commonly be classified into three main types: carbon-based, semiconductor-based and metallic-based.
- the SALDI process using inorganic matrices for the preparations is described in several works, for example, in Law et al. (Anal. Bioanal. Chem. 2011, 399, 2597, DOI 10.1007/s00216-010- 4063-3).
- X heteroatom modified plasma activated chemical vapor deposited
- the laser-desorption ionization mass spectrometric (LDI-MS) measurements are preferably performed in positive ion mode, using utilizing a Nd:YAG-laser wavelength of 355 nm.
- the laser repetition rates of the LDI-MS system are set as appropriate for MALDI experiments and as appropriate for SALDI experiments respectively.
- Further parameters of the measurements such as moving patterns, movement speed, frequency, acquisition time, mass spectral scan time, laser intensity or voltage settings are selected as appropriate and known to a person skilled in the art, who is also familiar with the required software based data analysis tools.
- a fourth aspect of the invention relates to a conjugate of a derivatisation agent according to the first aspect of the invention and an analyte, wherein the conjugate has the structure of formula (II)
- the analyte is selected from the group consisting of nucleic acid (preferably selected from DNA, mRNA, miRNA, and rRNA), amino acid, peptide, protein (preferably cell surface receptor or cytosolic protein), metabolite, hormone (preferably selected from testosterone, estrogen and estradiol), fatty acid, lipid, carbohydrate, steroid, ketosteroid, secosteroid (Vitamin D), molecule characteristic of a certain modification of another molecule (preferably selected from sugar moiety, phosphoryl residue on a protein, methyl-residue on genomic DNA), substance that has been internalized by the organism (preferably selected from therapeutic drug, drug of abuse, toxin) and a metabolite of such a substance.
- nucleic acid preferably selected from DNA, mRNA, miRNA, and rRNA
- amino acid preferably selected from testosterone, estrogen and estradiol
- fatty acid lipid, carbohydrate, steroid, ketosteroid, secosteroid (Vitamin D)
- Analytes may be present in a sample of interest, e.g. a biological or clinical sample.
- sample or “sample of interest” are used interchangeably herein, referring to a part or piece of a tissue, organ or individual, typically being smaller than such tissue, organ or individual, intended to represent the whole of the tissue, organ or individual.
- samples include but are not limited to fluid samples such as blood, serum, plasma, synovial fluid, spinal fluid, urine, saliva, and lymphatic fluid, or solid samples such as dried blood spots and tissue extracts. Further examples of samples are cell cultures or tissue cultures.
- the sample may be derived from an “individual” or “subject”.
- the subject is a mammal.
- Mammals include, but are not limited to, domesticated animals (e.g., cows, sheep, cats, dogs, and horses), primates (e.g., humans and non-human primates such as monkeys), rabbits, and rodents (e.g., mice and rats).
- a sample Before being analysed via Mass Spectrometry, a sample may be pre -treated in a sample- and/or analyte specific manner.
- pre-treatment refers to any measures required to allow for the subsequent analysis of a desired analyte via Mass Spectrometry.
- Pre-treatment measures typically include but are not limited to the elution of solid samples (e.g. elution of dried blood spots), addition of hemolizing reagent (HR) to whole blood samples, and the addition of enzymatic reagents to urine samples. Also the addition of internal standards (ISTD) is considered as pre-treatment of the sample.
- hemolysis reagent refers to reagents which lyse cells present in a sample
- hemolysis reagents in particular refer to reagents which lyse the cell present in a blood sample including but not limited to the erythrocytes present in whole blood samples.
- a well known hemolysis reagent is water (H2O).
- Further examples of hemolysis reagents include but are not limited to deionized water, liquids with high osmolarity (e.g. 8M urea), ionic liquids, and different detergents.
- an internal standard is a known amount of a substance which exhibits similar properties as the analyte of interest when subjected to the mass spectrometric detection worklflow (i.e. including any pre-treatment, enrichment and actual detection step). Although the ISTD exhibits similar properties as the analyte of interest, it is still clearly distinguishable from the analyte of interest. Exemplified, during chromatographic separation, such as gas or liquid chromatography, the ISTD has about the same retention time as the analyte of interest from the sample. Thus, both the analyte and the ISTD enter the mass spectrometer at the same time.
- the ISTD however, exhibits a different molecular mass than the analyte of interest from the sample. This allows a mass spectrometric distinction between ions from the ISTD and ions from the analyte by means of their different mass/charge (m/z) ratios. Both are subject to fragmentation and provide daughter ions. These daughter ions can be distinguished by means of their m/z ratios from each other and from the respective parent ions. Consequently, a separate determination and quantification of the signals from the ISTD and the analyte can be performed. Since the ISTD has been added in known amounts, the signal intensity of the analyte from the sample can be attributed to a specific quantitative amount of the analyte.
- an ISTD allows for a relative comparison of the amount of analyte detected, and enables unambiguous identification and quantification of the an- alyte(s) of interest present in the sample when the analyte(s) reach the mass spectrometer.
- the ISTD is an isotopically labeled variant (comprising e.g.2 H,13 C, orl5 N etc. label) of the analyte of interest.
- the sample may also be subjected to one or more enrichment steps.
- first enrichment process or “first enrichment workflow” refers to an enrichment process which occurs subsequent to the pre-treatment of the sample and provides a sample comprising an enriched analyte relative to the initial sample.
- the first enrichment workflow may comprise chemical precipitation (e.g. using acetonitrile) or the use of a solid phase. Suitable solid phases include but are not limited to Solid Phase Extraction (SPE) cartridges, and beads.
- SPE Solid Phase Extraction
- Beads may be non-magnetic, magnetic, or paramagnetic. Beads may be coated differently to be specific for the analyte of interest.
- the coating may differ depending on the use intended, i.e. on the intended capture molecule. It is well-known to the skilled person which coating is suitable for which analyte.
- the beads may be made of various different materials. The beads may have various sizes and comprise a surface with or without pores.
- the term “second enrichment process” or “second enrichment workflow” refers to an enrichment process which occurs subsequent to the pre-treatment and the first enrichment process of the sample and provides a sample comprising an enriched analyte relative to the initial sample and the sample after the first enrichment process.
- the reactive group Y is selected from the group consisting of carbonyl group, diene group, hydroxyl group, amine group, imine group, thiol group, diol group, phenolic group, expoxid group, disulfide group, and azide group.
- the analyte molecule before being reacted with the derivatisation agent, comprises a functional group selected from the group above, wherein each of the functional groups indicated in this group is capable of forming a covalent bond with reactive unit X of the derivatisation agent.
- a functional group present on an analyte molecule would be first converted into another group that is more readily available for reaction with reactive unit X of the derivatisation agent.
- the analyte molecule before being reacted with the derivatisation agent, comprises a carbonyl group as functional group which is selected from the group consisting of a carboxylic acid group, aldehyde group, keto group, a masked aldehyde, masked keto group, ester group, amide group, and anhydride group.
- a carbonyl group as functional group which is selected from the group consisting of a carboxylic acid group, aldehyde group, keto group, a masked aldehyde, masked keto group, ester group, amide group, and anhydride group.
- the carbonyl group is an amide group
- the skilled person is well-aware that the amide group as such is a stable group, but that it can be hydrolized to convert the amide group into an carboxylic acid group and an amino group.
- Hydrolysis of the amide group may be achieved via acid/base catalysed reaction or by enzymatic process either of which is well-known to the skilled person.
- the carbonyl group is a masked aldehyde group or a masked keto group
- the respective group is either a hemiacetal group or acetal group, in particular a cyclic hemiacetal group or acetal group.
- the acetal group is converted into an aldehyde or keto group before reaction with the derivatisation agent.
- the carbonyl group is a keto group.
- the keto group may be transferred into an intermediate imine group before reacting with the reactive unit of the derivatisation agent.
- the analyte molecule comprising one or more keto groups is preferably a ketosteroid.
- the ketosteroid is selected from the group consisting of testosterone, epitestosterone, dihydrotestosterone (DHT), desoxymethyltestosterone (DMT), tetrahy- drogestrinone (THG), aldosterone, estrone, 4-hydroxyestrone, 2-methoxyestrone, 2- hydroxyestrone, 16-ketoestradiol, 16 alpha-hydroxyestrone, 2-hydroxyestrone-3- methylether, prednisone, prednisolone, pregnenolone, progesterone, DHEA (dehydroepiandrosterone), 17-OH pregnenolone, 17-OH progesterone, 17-OH progesterone, androsterone, epiandrosterone, and delta 4 androstenedione) 11- desoxy corti sol corticosterone, 21-deoxy corti sol, 11 -deoxycorticosterone, allo- pregnanolone,
- DHT
- the carbonyl group is a carboxyl group.
- the carboxyl group reacts directly with the derivatisation agent or it is converted into an activated ester group before reaction with the derivatisation agent.
- the analyte molecule comprising one or more car- boxyl groups is selected from the group consisting of D8- Tetrahydrocannabinol-acid , Benzoylec- gonin, Salicylic acid, 2-hydroxybenzoic acid, Gabapentin, Pregabalin, Valproic acid, Vancomycin, Methotrexat, Mycophenolic acid, Montelukast, Repaglinide, Furosemide, Telmisartan, Gemfibrozil, Diclorofenac, Ibuprofen, Indomethacin, Zomepirac, Isoxepac, and Penicilin.
- the analyte molecule comprising one or more carboxyl groups is preferably an amino acid preferably selected from the group consisting of arginine, lysine, aspartic acid, glutamic acid, glutamine, asparagine, histidine, serine, threonine, tyrosine, cysteine, tryptophan, alanine, isoleucine, leucine, methionine, phenyalanine, valine, proline, and glycine.
- the carbonyl group is an aldehyde group.
- the aldehyde group may be transferred into an intermediate imine group before reacting with the reactive unit of the derivatisation agent.
- the analyte molecule comprising one or more aldehyde groups is preferably selected from the group consisting of Pyridoxal, N-Acetyl-D-glucosamine, Alcaftadine, Streptomycin, Josamycin.
- the carbonyl group is an carbonyl ester group.
- the analyte molecule comprising one or more ester groups is preferably selected from the group consisting of Cocaine, Heroin, Ritalin, Aceclofenac, Acetycholine, Amcinonide, Amiloxate, amylocaine, Anileridine, Ara- nidipine, and Artesunate, Pethidine.
- the carbonyl group is an anhydride group.
- the analyte molecule comprising one or more anhydride groups is preferably selected from the group consisting of Cantharidin, Succinic Anhydride, Trimellitic Anhydride, and Maleic Anhydride.
- the analyte molecule comprises one or more diene groups, in particular to conjugated diene groups, as functional group.
- the analyte molecule comprising one or more diene groups is preferably a secosteroid.
- the secosteroid is selected from the group consisting of Cholecaleiferol (Vitamin D3), Ergocalciferol (Vitamin D2), Calcidiol, Calcit- riol, Tachysterol, Lumisterol und Tacalcitol.
- the secosteroid is Vitamin D, in particular Vitamin D2 or D3 or derivates thereof.
- the secosteroid is selected from the group consisting of Vitamin D2, Vitamin D3, 25- Hydroxy Vitamin D2, 25-Hydroxy Vitamin D3, 3 -Epi-25 -Hydroxy Vitamin D2, 3- Epi-25 -Hydroxy Vitamin D3, 1 ,25-Dihydroxy Vitamin D2, 1 ,25-Dihydroxy Vitamin D3, 24,25-Dihydroxy Vitamin D2, and 24,25-Dihydroxy Vitamin D3, Vitamin A, Tretinoin, Isotretinoin, Alitretinoin, Natamycin, Sirolimus, Amphotericin B, Nystatin, Everolimus, Temsirolimus, Fidaxomicin.
- the analyte molecule comprises one or more hydroxyl group as functional group.
- the analyte molecule then preferably comprises a single hydroxyl group or two hydroxyl groups.
- the two hydroxyl groups may be positioned adjacent to each other (1,2 diol) or may be separated by 1, 2, or 3 C- atoms (1 ,3-diol, 1 ,4-diol, 1 ,5-diol, respectively).
- the analyte molecule comprises an 1,2 diol group.
- said analyte is preferably selected from the group consisting of primary alcohol, secondary alcohol and tertiary alcohol.
- the analyte molecule comprises one or more hydroxyl groups
- the analyte is preferably selected from the group consisting of Benzyl alcohol, Menthol, L-Camitine, Pyridoxine, Metronidazole, Isosorbide mononitrate, Guaifenesin, Clavula- nate, Migitol, Zalcitabine, Isoprenaline, Aciclovir, Methocarbamol, Tramadol, Venlafaxine, Atropine, Clofedanol, alpha-Hydroxyalprazolam, Alpha- Fly droxytriazolam, Forazepam, Oxazepam, Tamazepam, Ethylglucuronide, Ethylmorphine, Morphine, Morphine-3
- the analyte molecule comprises more than one hydroxyl groups
- the analyte is preferably selected from the group consisting of Vitamin C, Glucosamine, Mannitol, Tetrahydrobiopterin, Cytarabine, Azacitidine, Ribavirin, Floxuridine, Gem- citadine, Streptozocin, Adenosine, Vibarabine, Cladribine, Estriol, Trifluridine, Clofarabine, Nadolol, Zanamivir, Factulose, Adenosine monophosphate, Idoxuridine, Regadenoson, Fincomy- cin, Clindamycin, Canaglifozin, Tobramycin, Netilmicin, Kanamycin, Ticagrelor, Epirubicin, Doxorubicin, Arbekacin, Steptomycin, Quabain, Amikacin, Neomycin, Framycetin, Paromomycin, Erythromycin, Clarithromycin, Azithro
- the analyte molecule comprises one or more thiol group (including but not limited to alkyl-thiol and thiol ary groups) as functional group.
- the analyte molecule comprising one or more thiol groups is preferably selected from the group consisting of Thiomandelic acid, DL-Captopril, DL-Thiorphan, N- Acetylcysteine, D-Penicillamine, Glutathione, L-Cysteine, Zefenoprilat, Tiopronin, Dimercaprol, Succimer.
- the analyte molecule comprises one or more disulfide group as functional group.
- the analyte molecule comprising one or more disulfide groups is preferably selected from the group consisting of Glutathione Disulfide, Dipyrithione, Selenium Sulfide, Disulfiram, Lipoic Acid, L-Cystine, Fursultiamine, Octreotide, Desmopressin, Vapreotide, Terlipressin, Linaclotide, Peginesatide.
- the analyte molecule comprises one or more epoxide group as functional group.
- the analyte molecule comprising one or more epoxide groups is preferably selected from the group consisting of Carbamazepine 10,11 epoxide, Carfilzomib, Furosemide epoxide, and Fosfomycin, Sevelamer, Cerulenin, Scopolamine, Tiotropium, Methyl scopolamine bromide, Ep- lerenone, Mupirocin, Natamycin, Carfilzomib, Troleandomycin.
- the analyte molecule comprises one or more phenol groups as functional group.
- Analyte molecules comprising one or more phenol groups are preferably steroids or steroid- like compounds.
- the analyte molecule comprising one or more phenol groups is preferably a steroid or a steroid-like compound having an A-ring which is sp 2 hybridized and an OH group at the 3 -position of the A-ring.
- the steroid or steroid-like analyte molecule is preferably selected from the group consisting of estrogen, estrogen-like compounds, estrone (El), estradiol (E2), 17a-estradiol, 17p-estradiol, estriol (E3), 16-epiestriol, 17-epiestriol, and 16, 17-epi- estriol, and/or metabolites thereof.
- the analyte molecule comprises an amine group as functional group.
- the amine group is preferably an alkyl-amine or an aryl-amine group.
- the analyte comprising one or more amine groups is selected from the group consisting of proteins and peptides.
- the analyte molecule comprising an amine group is preferably selected from the group consisting of 3,4- Methylendioxyamphetamin, 3 ,4-Methylendioxy-N-ethylamphetamin, 3 ,4- Methylenedioxymethamphetamine, Amphetamin, Methamphetamin, N-methyl-1,3- benzodi oxol- ylbutanamine, 7-Aminoclonazepam, 7-amino flunitrazepam, 3,4- Dimethylmethcathinone, 3-Flu- oromethcathinone, 4-Methoxymethcathinone, 4- Methylethcathinone, 4-Methylmethcathinone, Amfepramone, Butylone, Ethcathinone, Flephedrone, Methcathinone, Methylone, Methylendiox- ypyrovaleron, Benzoy
- the analyte molecule is a carbohydrate or substance having a carbohydrate moiety, e.g. a glycoprotein or a nucleoside.
- the analyte molecule is then preferably a monosaccharide, in particular selected from the group consisting of ribose, desoxyribose, arabinose, ribulose, glucose, mannose, galactose, fucose, fructose, N-acetylglucosamine, N-acetylgalactosamine, neuraminic acid, N- acetylneurominic acid, etc..
- the analyte molecule is an oligosaccharide, in particular selected from the group consisting of a disaccharide, trisaccharid, tetrasaccharide, polysaccharide.
- the disaccharide is preferably selected from the group consisting of sucrose, maltose and lactose.
- the analyte molecule is a substance comprising above described mono-, di-, tri-, tetra-, oligo- or polysaccharide moiety.
- the analyte molecule comprises an azide group as functional group which is selected from the group consisting of alkyl or aryl azide. The analyte molecule comprising one or more azide groups is then preferably selected from the group consisting of Zidovudine and Azidocillin.
- the functional group Y of the analyte reacts or is able to react with a reactive group X of the derivatisation agent; the reactive groups X of the derivatisation agent are disclosed in detail in the section related to the first aspect of the invention, where also the suitable bonding with the function group Y of the analyte is described. It is understood by a person skilled in the art what the remainders Xa and Ya of X and Y respectively are: in each case, a covalent bond is formed.
- the reactive group X of the derivatisation agent is a carbonyl reactive unit such as a hydrazine unit, especially a-NH-NFL group
- the chromophore C which the derivatisation agent carries, is a suitable chromophore enabling an efficient energy transfer during LDI. Furthermore, the derivatisation agent adds a sufficient large molecular weight onto an analyte of interest, wherein the weight addition results in a sufficient mass shift beyond the high noise background of biological samples in the lower molecular weight region. Generally, it is known that such high molecular weight resulted in unfavorable ionization properties (poor ionization efficiency, multiple fragmentation processes...), which is in the present case however circumvented by the presence of a permanent positive charge (Z unit in formula (I)). Therefore, the precursor ion (mother ion) can be detected with high sensitivity and, optionally, be selected for fragmentation in MS/MS applications.
- the conjugate has a molecular weight in the range of from >500 g/mol, preferably a molecular weight > 700 g/mol and/or a M + peak in a mass spectrum of m/z > 500, preferably > 700.
- the molecular weight of the conjugate is preferably so high that the resulting M + peak in a mass spectrum lies outside of the range of the low molecular weight background, i.e. the molecular weight of the derivatisation agent, which is coupled to the analyte of interest, is so high that it brings the M + peak of the conjugate outside of the low molecular weight background range.
- the conjugate comprises a neutral loss unit C- Ll-Z, wherein C, LI and Z are as defined above, which has a molecular weight of > 300 g/mol and/or a peak in a mass spectrum of m/z > 300, preferably a molecular weight of > 320 g/mol and/or a peak in a mass spectrum of m/z > 320, more preferably a molecular weight of > 350 g/mol and/or a peak in a mass spectrum of m/z > 350, more preferably a molecular weight of > 370 g/mol and/or a peak in a mass spectrum of m/z > 370, more preferably a molecular weight of > 380 g/mol and/or a peak in a mass spectrum of m/z > 380.
- C, LI and Z are as defined above, which has a molecular weight of > 300 g/mol and/or a peak in a mass spectrum of m/z > 300,
- fragmentation refers to the dissociation of a single molecule into two or more separate molecules.
- fragmentation refers to a specific fragmentation event, wherein the breaking point in the parent molecule at which the fragmentation event takes place is well defined, and wherein the two or more daughter molecules resulting from the fragmentation event are well characterized. It is well-known to the skilled person how to determine the breaking point of a parent molecule as well as the two or more resulting daughter molecules. The resulting daughter molecules may be stable or may dissociate in subsequent fragmentation events.
- Fragmentation may occur via collision- induced dissociation (CID), electroncapture dissociation (ECD), electron-transfer dissociation (ETD), negative electron-transfer dissociation (NETD), electron- detachment dissociation (EDD), photodissociation, particularly infrared multiphoton dissociation (IRMPD) and blackbody infrared radiative dissociation (BIRD), surface- induced dissociation (SID), Higher-energy C-trap dissociation (HCD), charge remote fragmentation.
- CID collision- induced dissociation
- ECD electroncapture dissociation
- ETD electron-transfer dissociation
- NETD negative electron-transfer dissociation
- ESD electron- detachment dissociation
- photodissociation particularly infrared multiphoton dissociation (IRMPD) and blackbody infrared radiative dissociation (BIRD), surface- induced dissociation (SID), Higher-energy C-trap dissociation (HCD), charge remote
- the mass spectrometric analysis is laser desorption ionization mass spectrometry (LDI- MS), more preferably is (MA)LDI-MS, more preferably (MA)LDI-MS/MS, or (SA)LDI-MS, more preferably (SA)LDI-MS/MS.
- LDI- MS laser desorption ionization mass spectrometry
- Derivatisation agent preferably derivatisation agent for analytes intended to be analysed via laser desorption ionization mass spectrometry (LDI-MS), comprising a structural element of formula (I)
- C is a chromophore having an absorption maximum in the range of from 280 to
- Z is a charged unit comprising at least one permanently charged moiety
- X is a reactive group
- LI, L2 are each a linker unit; and p is either zero or 1.
- linker LI is selected from the group consisting of (C1-C5 alkylene-O-) m group with m being an integer in the range of from 1 to 10, Cl to C20 alkylene group, Cl to C20 alkylene group - heteroaryl group and (C1-C5 alkylene)-O-(Cl-C5 alkylene) group, optionally connected to or intersected by a unit selected from the group consisting of (hetero)aryl group, N2, NO, NO2, S2, SO, SO2, CO, and CO2, said unit being preferably, if present, a heteroaryl group, more preferably from triazol, phenyltriazol, tetrazol and phenyltetrazol.
- linker LI has a structure (Lla) q -(Llb) r -(Llc) s , wherein q, r, s are each zero or 1, with the condition that at least one of q, r, s is 1; Lla being selected from the group consisting of (C1-C5 alkylene-O- ) m group with m being an integer in the range of from 1 to 10, Cl to CIO alkylene group; Lib being a unit selected from the group consisting of N2, NO, NO2, S2, SO, SO2, CO, CO2, triazol, phenyltriazol, tetrazol and phenyltetrazol, wherein the unit is preferably a triazol or a tetrazol, more preferably the neutral loss unit N is a triazol, more preferably the neutral loss unit N is a 1,2,3 triazol ring, which is bound to the linker
- linker L2 comprises 1 to 10 C atoms and optionally one or more heteroatom(s).
- the reactive group X is selected from the group consisting of carbonyl reactive unit, diene reactive unit, hydroxyl reactive unit, amino reactive unit, imine reactive unit, thiol reactive unit, diol reactive unit, phenol reactive unit, epoxide reactive unit, disulfide reactive unit, and azido reactive unit.
- a kit comprising the derivatisation agent according to any one of embodiments 1 to 17.
- a derivatisation agent for the mass spectrometric determination of an analyte molecule, wherein the mass spectrometric determination is laser desorption ionization mass spectrometry (LDI-MS), preferably is (MA)LDI-MS, more preferably (MA)LDI-MS/MS, or (SA)LDI-MS, more preferably (SA)LDI-MS/MS.
- LDI-MS laser desorption ionization mass spectrometry
- nucleic acid preferably selected from DNA, mRNA, miRNA, and rRNA
- amino acid preferably cell surface receptor or cytosolic protein
- metabolite hormone (preferably selected from testosterone, estrogen and estradiol), fatty acid, lipid, carbohydrate, steroid, ketosteroid, secosteroid (Vitamin D), molecule characteristic of a certain modification of another molecule (preferably selected from sugar moiety, phosphoryl residue on a protein, methyl-residue on genomic DNA), substance that has been internalized by the organism (preferably selected from therapeutic drug, drug of abuse, toxin) and a metabolite of such a substance.
- any one of embodiments 20 to 22 comprising a neutral loss unit C-Ll-Z, which has a molecular weight of > 300 g/mol and/or a peak in a mass spectrum of m/z > 300, preferably a molecular weight of > 320 g/mol and/or a peak in a mass spectrum of m/z > 320, more preferably a molecular weight of > 350 g/mol and/or a peak in a mass spectrum of m/z > 350, more preferably a molecular weight of > 370 g/mol and/or a peak in a mass spectrum of m/z > 370, more preferably a molecular weight of > 380 g/mol and/or a peak in a mass spectrum of m/z > 380.
- a method for the mass spectrometric determination of an analyte molecule comprising the steps:
- the method for the mass spectrometric determination wherein the mass spectrometric analysis is laser desorption ionization mass spectrometry (LDI-MS), preferably is (MA)LDI-MS, more preferably (MA)LDI-MS/MS, or (SA)LDI-MS, more preferably (SA)LDI-MS/MS.
- LDI-MS laser desorption ionization mass spectrometry
- the present invention is further illustrated by the following reference examples, comparative examples, and examples.
- Hydrazide 5a 55 mg, 90.0 pmol
- testosterone 77 mg, 270 pmol
- the reaction mixture was stirred at room temperature for 16 h and subsequently concentrated in vacuo.
- the crude product was purified by preparative RP-HPLC using a linear gradient from water/acetonitrile 100/0 -> 0/100 in 60 min.
- the desired hydrazone 6a was obtained as a beige solid (35.6 mg, 40.0 pmol, 44 %) after lyophilization.
- Hydrazide 5b (115 mg, 0.18 mmol) and testosterone (153 mg, 0.53 mmol) were dissolved in 1 ml methanol/formic acid (99/1, v/v). The reaction mixture was stirred at room temperature for 16 h and subsequently concentrated in vacuo. The crude product was purified by preparative RP-HPLC using a linear gradient from water/acetonitrile 100/0 -> 0/100 in 60 min. The desired hydrazone 6b was obtained as a beige solid (54.0 mg, 58.8 pmol, 32 %) after lyophilization.
- Example 5 Laser-desorption/ionization mass spectrometric analysis
- An analyte mix was prepared from the molar concentrated stock solutions, yielding a molar concentration of 3 pM (80% ACN) of each analyte. Further dilutions of this analyte mix solution in 300 nM, 30 nM and 3.0 nM (80% ACN) were prepared.
- a matrix solution was freshly prepared, consisting of 10 mg/ml sinapinic acid in 50% ACN, 0.1% formic acid (FA).
- X heteroatom modified plasma activated chemical vapor deposited
- LDLMS laser-desorption/ionization mass spectrometric
- the laser intensity can be varied in a relative scale of up to 500 - resembling a maximum output energy of 30 pj - while the optimal laser energy of the sinapinic acid MALDI experiments was found to be 280 units and the optimal laser energy of the matrix free SALDI experiments was increased to 380 units.
- Individual voltage settings are outlined in detail with the respective measurements.
- Equimolar four-analyte-mixes (containing all four analytes 6a, 6b, 6c and testosterone (T)) were prepared with different concentrations (3 pM, 300 nM, 30 nM and 3 nM) and subsequently premixed (1 :1) with a sinapinic acid matrix solution.
- 1 pl of this analytematrix solution was applied to a MALDI target steelplate by dried-droplet preparation.
- the obtained analyte-matrix crystals were measured by MALDI-MS in full scan positive ion mode (m/z 200 to m/z 1000; further details see experimental section). As expected, analysis of the full scan MALDI mass spectras (see Fig.
- Fig2 shows dilution series of an equimolar (3 pM, 300 nM, 30 nM and 3 nM) analyte mix consisting of derivatized compounds [6a] + , [6b] + and [6c] + in comparison to underivatized Testosterone [TH] + in the presence of sinapinic acid MALDI-matrix.
- the number of detected counts are displayed in a logarithmic scale against the corresponding molar concentration.
- the herein described chromophore-equipped derivatisation reagents provided for MALDI-MS applications primary a “mass-tag” advantage, which allowed the detection of low molecular weight analytes in absence of matrix-induced low-molecular weight interferences.
- the isolated derivatized testosterone conjugates 6a and 6b were evaluated for laser-desorption/ionization mass spectrometric (MALDI-MS) applications.
- the performance of the two chromophore-containing conjugates 6a and 6b were again compared against native testosterone (T) and the derivatized testosterone conjugate 6c, which does not contain a LDI suitable chromophore.
- Equimolar four-analyte-mixes (containing all four analytes 6a, 6b, 6c and testosterone (T)) with different concentrations (3000 nM, 300 nM, 30 nM and 3 nM) were prepared and directly applied to a functionalized SALDLMS target plate by dried- droplet preparation.
- the obtained spots were measured by SALDI-MS in full scan positive ion mode (m/z 50 to m/z 1000; further details see experimental section).
- analysis of the full scan LDI mass spectras indicated an increased number of counts for m/z of the derivatized testosterone-conjugates 6a and 6b in comparison to the native analyte ([TH] + , protonated testosterone cation), which corresponds to a ⁇ 15-fold signal enhancement at 3 pM concentration.
- Fig. 4 shows dilution series of an equimolar (3 pM, 300 nM, 30 nM and 3 nM) analyte mix consisting of derivatized compounds [6a] + , [6b] + and [6c] + in comparison to underivatized Testosterone [TH] + in the presence of sinapinic acid MALDI-matrix.
- the number of detected counts are displayed in a logarithmic scale against the corresponding molar concentration.
- This signal enhancement was especially beneficial for high sensitive measurements at low concentrations.
- native testosterone was not detectable at 3 nM, but detectable after derivatisation with reagent 5a and 5b (as [6a] + and [6b] + ) at this low concentration. It is important to note, that using the LDI-compatible derivatisation reagents 5a and 5b helped to increase the signal of the corresponding testosterone conjugates (as [6a] + and [6b] + ) in comparison to the state- of-the-art conjugate 6c, which lacked a LDI-compatible chromophore.
- the tested derivatisation reagents 5a-5c were characterized by UV-spectroscopy.
- the sinapinic acid derived reagents 5a and 5b displayed an absorption maximum of 307 nm and 315 nm, respectively, which is still comparable to the routinely used sinapinc acid. Since the absorption maximas of these two compounds is relatively close ( ⁇ 40 nm) to the wavelength of the laser beam (355 nm), efficient energy transfer is to be expected. This clearly indicates that 5a and 5b are suitable for LDI-applications due to their ability to absorb the energy of the laser beam (typically 355 nm (J Mass Spectrom.2021;56:4664)), which is regarded as an essential factor for MALDI matrices (Chem.
- Reagent 5c has a local absorption maximum if 240 nm, which is more than 100 nm below the routinely used Nd:YAG laser wavelength. Based on our understanding and the available data, this leads to less spectral overlap with the laser beam and consequently a lower desorption/ionization efficiency, compared to 5a and 5b.
- Fig. 1 shows a foil scan MALDI mass spectrum (m/z 200 to m/z 1000) of an equimolar (3 pM) analyte mix consisting of derivatized compounds 6a, 6b, 6c and native testosterone in a sinapinic acid MALDI-matrix.
- Fig. 2 shows dilution series of an equimolar (3 pM, 300 nM, 30 nM and 3 nM) analyte mix consisting of derivatized compounds [6a] + , [6b] + and [6c] + in comparison to underi- vatized Testosterone [TH] + in the presence of sinapinic acid MALDI-matrix.
- the number of detected counts are displayed in a logarithmic scale against the corresponding molar concentration.
- Fig. 3 shows a full scan SALDI mass spectrum (m/z 50 to m/z 1000) of an equimolar (3 pM) analyte mix consisting of derivatized compounds [6a] + , [6b] + and [6c] + in comparison to underivatized Testosterone [TH] + without the use of an additional MALDI matrix.
- Fig. 4 shows dilution series of an equimolar (3 pM, 300 nM, 30 nM and 3 nM) analyte mix consisting of derivatized compounds [6a] + , [6b] + and [6c] + in comparison to underivatized Testosterone [TH] + in the presence of sinapinic acid MALDI-matrix.
- the number of detected counts are displayed in a logarithmic scale against the corresponding molar concentration.
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Abstract
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Priority Applications (4)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2025528264A JP2025538395A (en) | 2022-11-21 | 2023-11-20 | Derivatization agents for laser desorption/ionization mass spectrometry |
| CN202380080201.4A CN120225880A (en) | 2022-11-21 | 2023-11-20 | Derivatizing agent for laser desorption ionization mass spectrum |
| EP23808821.5A EP4623304A1 (en) | 2022-11-21 | 2023-11-20 | Derivatisation agent for laser desorption ionization mass spectrometry |
| US19/211,061 US20250277801A1 (en) | 2022-11-21 | 2025-05-16 | Derivatisation agent for laser desorption ionization mass spectrometry |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP22208585.4 | 2022-11-21 | ||
| EP22208585 | 2022-11-21 |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| US19/211,061 Continuation US20250277801A1 (en) | 2022-11-21 | 2025-05-16 | Derivatisation agent for laser desorption ionization mass spectrometry |
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| Publication Number | Publication Date |
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| WO2024110385A1 true WO2024110385A1 (en) | 2024-05-30 |
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Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/EP2023/082387 Ceased WO2024110385A1 (en) | 2022-11-21 | 2023-11-20 | Derivatisation agent for laser desorption ionization mass spectrometry |
Country Status (5)
| Country | Link |
|---|---|
| US (1) | US20250277801A1 (en) |
| EP (1) | EP4623304A1 (en) |
| JP (1) | JP2025538395A (en) |
| CN (1) | CN120225880A (en) |
| WO (1) | WO2024110385A1 (en) |
Citations (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20040157344A1 (en) * | 2002-12-19 | 2004-08-12 | Poguang Wang | Intensified neutral loss tags and use thereof in mass spectrometry |
| WO2010141075A1 (en) * | 2009-05-31 | 2010-12-09 | Dh Technologies Development Pte. Ltd. | Specific analysis of ketone and aldehyde analytes using reagent compounds labeling strategies, and mass spectrometry workflow |
| WO2011091436A1 (en) | 2010-01-25 | 2011-07-28 | Dh Technologies Development Pte. Ltd. | Quantitative analysis of vitamin d3, vitamin d2, and metabolites thereof |
| WO2018141821A1 (en) * | 2017-01-31 | 2018-08-09 | Roche Diagnostics Gmbh | Reagent for mass spectrometry |
| WO2020020851A1 (en) * | 2018-07-24 | 2020-01-30 | F. Hoffmann-La Roche Ag | Reagent for mass spectrometry |
| WO2020020850A1 (en) | 2018-07-24 | 2020-01-30 | F. Hoffmann-La Roche Ag | Reagent for mass spectrometry |
| WO2022084362A1 (en) * | 2020-10-22 | 2022-04-28 | F. Hoffmann-La Roche Ag | Detection of an analyte of interest by nanoesi mass spectrometry |
-
2023
- 2023-11-20 EP EP23808821.5A patent/EP4623304A1/en active Pending
- 2023-11-20 CN CN202380080201.4A patent/CN120225880A/en active Pending
- 2023-11-20 WO PCT/EP2023/082387 patent/WO2024110385A1/en not_active Ceased
- 2023-11-20 JP JP2025528264A patent/JP2025538395A/en active Pending
-
2025
- 2025-05-16 US US19/211,061 patent/US20250277801A1/en active Pending
Patent Citations (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20040157344A1 (en) * | 2002-12-19 | 2004-08-12 | Poguang Wang | Intensified neutral loss tags and use thereof in mass spectrometry |
| WO2010141075A1 (en) * | 2009-05-31 | 2010-12-09 | Dh Technologies Development Pte. Ltd. | Specific analysis of ketone and aldehyde analytes using reagent compounds labeling strategies, and mass spectrometry workflow |
| WO2011091436A1 (en) | 2010-01-25 | 2011-07-28 | Dh Technologies Development Pte. Ltd. | Quantitative analysis of vitamin d3, vitamin d2, and metabolites thereof |
| WO2018141821A1 (en) * | 2017-01-31 | 2018-08-09 | Roche Diagnostics Gmbh | Reagent for mass spectrometry |
| WO2020020851A1 (en) * | 2018-07-24 | 2020-01-30 | F. Hoffmann-La Roche Ag | Reagent for mass spectrometry |
| WO2020020850A1 (en) | 2018-07-24 | 2020-01-30 | F. Hoffmann-La Roche Ag | Reagent for mass spectrometry |
| WO2022084362A1 (en) * | 2020-10-22 | 2022-04-28 | F. Hoffmann-La Roche Ag | Detection of an analyte of interest by nanoesi mass spectrometry |
Non-Patent Citations (25)
| Title |
|---|
| ANAL BIOANAL CHEM., vol. 410, 2018, pages 4015 - 4038 |
| ANAL BIOANALCHEM, vol. 410, 2018, pages 4015 - 4038 |
| ANAL. CHEM., vol. 86, no. 21, 2014, pages 10724 - 10731 |
| ANAL. CHEM., vol. 92, 2020, pages 6224 - 6228 |
| BIOMED. CHROMATOGR., vol. 25, 2011, pages 1 - 10 |
| CHEM ASIAN J., vol. 16, 2021, pages 868 - 878 |
| CHEM. REV., vol. 103, no. 2, 2003, pages 395 - 426 |
| CHEMBIOCHEM, vol. 22, 2021, pages 1430 - 1439 |
| CRIT REV ANAL CHEM., 30 December 2021 (2021-12-30), pages 1 - 17 |
| CRIT REVANAL CHEM., 30 December 2021 (2021-12-30), pages 1 - 17 |
| H. BAN ET AL., J. AM. CHEM. SOC., vol. 132, no. 5, 2010, pages 1523 - 1525 |
| HIGASHI ET AL., J. OF PHARMACEUTICAL AND BIOMEDICAL ANALYSIS, vol. 130, 2016, pages 181 - 190 |
| INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, vol. 353, 2013, pages 54 - 59 |
| J AM SOC MASS SPECTROM, vol. 18, no. 9, 2007, pages 1582 - 1590 |
| J MASS SPECTROM, vol. 56, 2021, pages e4731 |
| J MASS SPECTROM., vol. 56, 2021, pages e4731 |
| J. SEP. SCI., vol. 39, 2016, pages 102 - 114 |
| JAM SOC MASS SPECTROM, vol. 18, no. 9, 2007, pages 1582 - 1590 |
| LAW ET AL., ANAL. BIOANAL. CHEM., vol. 399, 2011, pages 2597 |
| MALDI, TRENDS IN ANALYTICAL CHEMISTRY, vol. 143, 2021, pages 116399 |
| MASS SPEC REV., vol. 38, 2019, pages 3 - 21 |
| RAHIMOFF ET AL., J. AM. CHEM. SOC., vol. 139, no. 30, 2017, pages 10359 - 10364 |
| SCIENTIFIC REPORTS, vol. 5, pages 17853 |
| T. HIGASHI J STEROID BIOCHEM MOL BIOL., vol. 162, pages 57 - 69 |
| T. HIGASHI, J STEROID BIOCHEM MOL BIOL., vol. 162, September 2016 (2016-09-01), pages 57 - 69 |
Also Published As
| Publication number | Publication date |
|---|---|
| EP4623304A1 (en) | 2025-10-01 |
| CN120225880A (en) | 2025-06-27 |
| JP2025538395A (en) | 2025-11-28 |
| US20250277801A1 (en) | 2025-09-04 |
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