WO2024199473A1 - Methods and compositions for targeted protein degradation - Google Patents
Methods and compositions for targeted protein degradation Download PDFInfo
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- WO2024199473A1 WO2024199473A1 PCT/CN2024/084926 CN2024084926W WO2024199473A1 WO 2024199473 A1 WO2024199473 A1 WO 2024199473A1 CN 2024084926 W CN2024084926 W CN 2024084926W WO 2024199473 A1 WO2024199473 A1 WO 2024199473A1
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
- A61K47/54—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
- A61K47/545—Heterocyclic compounds
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/51—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
- A61K47/62—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being a protein, peptide or polyamino acid
- A61K47/65—Peptidic linkers, binders or spacers, e.g. peptidic enzyme-labile linkers
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P37/00—Drugs for immunological or allergic disorders
- A61P37/02—Immunomodulators
- A61P37/06—Immunosuppressants, e.g. drugs for graft rejection
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D491/00—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00
- C07D491/22—Heterocyclic compounds containing in the condensed ring system both one or more rings having oxygen atoms as the only ring hetero atoms and one or more rings having nitrogen atoms as the only ring hetero atoms, not provided for by groups C07D451/00 - C07D459/00, C07D463/00, C07D477/00 or C07D489/00 in which the condensed system contains four or more hetero rings
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D519/00—Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
Definitions
- chemotherapeutic agents Despite advances, treatment of cancer with chemotherapeutic agents remains disappointing. Cancer patients treated with chemotherapeutic agents endure debilitating regimens and often a poor prognosis. This is because the effectiveness and/or application of chemotherapeutic agents containing toxic moieties is reduced by unwanted side effects due to off target or systemic toxicity. The ability to concentrate chemotherapeutics agents in tumor tissue while reducing normal tissue exposure may greatly reduce off target toxicity and improve overall clinical outcomes.
- HSP90 heat shock protein 90 kDa
- HSP90 heat shock protein 90 kDa
- a molecular chaperone that facilitates the 3-dimensional folding and maintenance of a significant portion of the proteins that signal for cellular growth including many oncogenes (Trepel J. et al, Nat Rev Cancer. 2010, 10: 537-49; Birbo B. et al, Int J Mol Sci., 2021, 22: 10317) .
- Cancer cells exist in tumor microenvironments characterized by reduced blood flow, high interstitial pressure, hypoxia and acidosis. To mitigate these conditions that negatively affect overall protein stability, cancer cells overexpress HSP90 and even secrete it extracellularly (Lang BJ et al, Int J Mol Sci.
- HSP90 chaperone activity is greatly enhanced in cancer cells due to the abundance of mutated or misfolded proteins (Lacey T, Lacey H, Cancer Treat Res Commun. 2021, 28: 100400) . Cancer specific post-translational modification and protein-protein interaction states also affect HSP90 chaperone activity (Backe SJ et al, J Biol Chem. 2020, 295: 11099-11117) . In cancer cells this elevated expression and enhanced chaperone activity results in increased binding of HSP90 to small molecule drugs that target its N-terminal ATP-binding.
- HSP90 drugs exhibit a chaperone retention effect by concentrating in tumor tissue, while cleared from normal tissue.
- Camptothecin analogs such as irinotecan, exatecan and SN-38 are antineoplastic agents that inhibit DNA topoisomerase I (Topo I) activity and prevent the relaxation of supercoiled DNA during DNA replication and RNA transcription (Pommier Y, Nat Rev Cancer. 2006, 6: 789–802) .
- These agents are commonly used in chemotherapeutic regimen to treat colorectal, pancreatic, small lung and gastric cancers along with pediatric sarcomas (Fujita K et al, World J Gastroenterol. 2015, 21: 12234–12248; Rubinson DA et al, Hematol Oncol Clin North Am.
- CREDCs comprising an exatecan-like portion, a linker, and a chemical moiety that binds HSP90 protein.
- Such compounds include those having the Formula I:
- compositions comprising the disclosed compounds of Formula I as well as methods for their manufacture and their biochemical activity are also provided.
- CREDC compounds having the Formula I:
- R Q and R T are each independently selected from H, optionally substituted (C 1 -C 4 ) alkyl, optionally substituted aryl, and optionally substituted heteroaryl, or R Q and R T are taken together with the carbon they are attached to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyl;
- X is absent or -NR W , wherein R W is H or (C 1 -C 4 ) alkyl;
- L is a linker
- A is a chemical moiety that binds HSP90 protein
- the articles “a” and “an” refer to one or more than one, e.g., to at least one, of the grammatical object of the article.
- the use of the words “a” or “an” when used in conjunction with the term “comprising” herein may mean “one, " but it is also consistent with the meaning of "one or more, “ “at least one, " and “one or more than one. "
- “about” and “approximately” generally mean an acceptable degree of error for the quantity measured given the nature or precision of the measurements. Exemplary degrees of error are within 20 percent (%) , typically, within 10%, and more typically, within 5%of a given range of values.
- the term “substantially” means more than 50%, preferably more than 80%, and most preferably more than 90%or 95%.
- compositions, methods, and respective component (s) thereof are used in reference to compositions, methods, and respective component (s) thereof, that are present in a given embodiment, yet open to the inclusion of unspecified elements.
- alkyl means a saturated straight chain or branched non-cyclic hydrocarbon having, unless specified otherwise, from 1 to 10 carbon atom e.g., (C 1 -C 6 ) alkyl or (C 1 -C 4 ) alkyl.
- Representative straight chain alkyls include methyl, ethyl, n-propyl, n-butyl, n-pentyl, n-hexyl, n-heptyl, n-octyl, n-nonyl and n-decyl; while saturated branched alkyls include isopropyl, sec-butyl, isobutyl, tert-butyl, isopentyl, 2-methylbutyl, 3-methylbutyl, 2-methylpentyl, 3-methylpentyl, 4-methylpentyl, 2-methylhexyl, 3-methylhexyl, 4-methylhexyl, 5-methylhexyl, 2, 3-dimethylbutyl, 2, 3-dimethylpentyl, 2, 4-dimethylpentyl, 2, 3-dimethylhexyl, 2, 4-dimethylpentyl, 2, 3-dimethylhexyl, 2, 4-dimethylhexyl, 2, 5-
- cycloalkyl means a saturated, monocyclic alkyl radical having from e.g., 3 to 10 carbon atoms (e.g., from 4 to 6 carbon atoms) .
- Representative cycloalkyls include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, cyclononyl, and cyclodecanyl.
- haloalkyl means and alkyl group in which one or more (including all) the hydrogen radicals are replaced by a halo group, wherein each halo group is independently selected from -F, -Cl, -Br, and -I.
- Representative haloalkyl groups include trifluoromethyl, bromomethyl, 1, 2-dichloroethyl, 4-iodobutyl, 2-fluoropentyl, and the like.
- Alkoxy means an alkyl radical attached through an oxygen linking atom, represented by –O-alkyl.
- (C 1 -C 4 ) alkoxy includes methoxy, ethoxy, proproxy, and butoxy.
- Haloalkoxy is a haloalkyl group which is attached to another moiety via an oxygen atom such as, e.g., –OCHF 2 or –OCF 3 .
- heterocyclyl means a 4-to 12-membered monocyclic or polycyclic saturated or partially unsaturated heterocyclic ring (e.g., bridged bicyclic) containing 1 to 4 heteroatoms independently selected from N, O, and S.
- the heterocycle may be attached via any heteroatom or carbon atom, as valency permits.
- heterocycles include morpholinyl, thiomorpholinyl, pyrrolidinonyl, pyrrolidinyl, piperidinyl, piperazinyl, oxiranyl, dioxanyl, oxetanyl, dihydrofuranyl, dihydropyranyl, isoindolinyl, dihydropyridinyl, tetrahydrofuranyl, tetrahydropyranyl, tetrahydropyrindinyl, tetrahydropyrimidinyl, diazabicyclooctanyl, hexahydropyrrolizinyl, 2-azaspiro [3.3] heptanyl, 2, 7-diazaspiro [3.5] nonanyl, 2-azaspiro [3.5] nonanyl, 3-azabicyclo [3.1.0] hexanyl, 8-azabicyclo [3.2.1] octanyl, 3, 8-diazabicyclo [3.2.1]
- heteroaryl means a 5-to 12-membered aromatic radical containing 1-4 heteroatoms selected from N, O, and S.
- a heteroaryl group may be mono-or bicyclic.
- the heteroaryl may be attached via any heteroatom or carbon atom, as valency permits.
- heteroaryl groups include pyridyl, furanyl, thienyl, pyrrolyl, oxazolyl, imidazolyl, thiazolyl, isoxazolyl, quinolinyl, pyrazolyl, isothiazolyl, pyridazinyl, pyrimidinyl, pyrazinyl, triazinyl, triazolyl, thiadiazolyl, isoquinolinyl, indazolyl, benzoxazolyl, benzofuryl, indolizinyl, imidazopyridyl, tetrazolyl, benzimidazolyl, benzothiazolyl, benzothiadiazolyl, benzoxadiazolyl, indolyl, tetrahydroindolyl, azaindolyl, imidazopyridyl, quinazolinyl, purinyl, benzothienyl, and the like
- halogen or halo means F, Cl, Br or I.
- linker refers to a chemical moiety that joins two other moieties (e.g., a therapeutic moiety and a binding moiety) .
- a linker can covalently join a therapeutic moiety (e.g., exatecan) and a binding moiety (e.g., chemical moiety which binds HSP90 protein.
- the linker is uncleavable in vivo.
- the linker comprises one or more cyclic ring systems.
- the linker comprises an alkyl chain optionally substituted by and/or interrupted with one or more chemical groups.
- the linker comprises optimal spatial and chemical properties to effectuate optimal therapeutic activity.
- HSP90 refers collectively, individually or in various combinations to the protein products of members of the heat shock protein 90 (90 kDa) gene family, including: HSP90AA1 (HSP90-alpha or HSP90 ⁇ ) , HSP90AB1 (HSP90-beta or HSP90 ⁇ ) , HSP90B1 (GRP94) and TRAP1.
- a hyphen designates the point of attachment of that group to the variable to which it is defined.
- -NH (C 1 -C 4 ) alkyl ⁇ means that the point of attachment for this group occurs on the nitrogen atom.
- a hash bond as in represents the point at which the depicted group is attached to the defined variable.
- the compounds described herein may have chiral centers and/or geometric centers (E-and Z-isomers) . It will be understood that the present disclosure encompasses all stereoisomers and geometric isomers. Tautomeric forms of the compounds described herein are also part of the present disclosure.
- the named or depicted stereoisomer is at least 60%, 70%, 80%, 90%, 99%or 99.9%by weight pure relative to all of the other stereoisomers. Percent by weight pure relative to all of the other stereoisomers is the ratio of the weight of one stereoisomer over the weight of the depicted stereoisomer plus the weight of the other stereoisomers.
- the pharmaceutically acceptable salts of the disclosed compounds refer to non-toxic “pharmaceutically acceptable salts. ”
- Pharmaceutically acceptable salt forms include pharmaceutically acceptable acidic/anionic or basic/cationic salts.
- Suitable pharmaceutically acceptable acid addition salts of the compounds described herein include e.g., salts of inorganic acids (such as hydrochloric acid, hydrobromic, phosphoric, nitric, and sulfuric acids) and of organic acids (such as, acetic acid, benzenesulfonic, benzoic, methanesulfonic, and p-toluenesulfonic acids) .
- Suitable pharmaceutically acceptable basic salts include e.g., ammonium salts, alkali metal salts (such as sodium and potassium salts) and alkaline earth metal salts (such as magnesium and calcium salts) .
- Compounds with a quaternary ammonium group also contain a counteranion such as chloride, bromide, iodide, acetate, perchlorate and the like.
- Other examples of such salts include hydrochlorides, hydrobromides, sulfates, methanesulfonates, nitrates, benzoates and salts with amino acids such as glutamic acid.
- pharmaceutically acceptable carrier refers to a non-toxic carrier, adjuvant, or vehicle that does not destroy the pharmacological activity of the compound with which it is formulated.
- Pharmaceutically acceptable carriers, adjuvants or vehicles that may be used in the compositions described herein include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose- based substances, polyethylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, polyethylene glycol,
- compositions or methods provided herein can be combined with one or more of any of the other compositions and methods provided herein.
- the term “subject” refers to human and non-human animals, including veterinary subjects.
- the term “non-human animal” includes all vertebrates, e.g., mammals and non-mammals, such as non-human primates, mice, rabbits, sheep, dog, cat, horse, cow, chickens, amphibians, and reptiles.
- the subject is a human and may be referred to as a patient.
- the terms “treat, “ “treating” or “treatment” refer, preferably, to an action to obtain a beneficial or desired clinical result including, but not limited to, alleviation or amelioration of one or more signs or symptoms of a disease or condition, diminishing the extent of disease, stability (i.e., not worsening) of the state of disease, amelioration or palliation of the disease state, diminishing rate of or time to progression, and remission (whether partial or total) .
- “Treatment” can also mean prolonging survival as compared to expected survival in the absence of treatment. Treatment does not need to be curative.
- a “therapeutically effective amount” is that amount sufficient to treat a disease in a subject.
- a therapeutically effective amount can be administered in one or more administrations.
- a therapeutically effective amount refers to a dosage of from about 0.01 to about 100 mg/kg body weight/day.
- administer include any method of delivery of a pharmaceutical composition or agent into a subject's system or to a particular region in or on a subject.
- an agent is administered intravenously, intramuscularly, subcutaneously, intradermally, intranasally, orally, transcutaneously, or mucosally.
- an agent is administered intravenously.
- an agent is administered orally.
- Administering an agent can be performed by a number of people working in concert.
- Administering an agent includes, for example, prescribing an agent to be administered to a subject and/or providing instructions, directly or through another, to take a specific agent, either by self-delivery, e.g., as by oral delivery, subcutaneous delivery, intravenous delivery through a central line, etc.; or for delivery by a trained professional, e.g., intravenous delivery, intramuscular delivery, intratumoral delivery, etc.
- the compound of Formula I is of the Formula II or III:
- R Q , R T , X, L and A are as described above for Formula I.
- the compound of Formula I is of the Formula III:
- R Q , R T , X, L and A are as described above for Formula I.
- X in the compound of Formula I, II, or III is absent or -NR W , wherein R W is H or CH 3 , wherein the remaining variables are as described above for Formula I.
- X in the compound of Formula I, II, or III is absent or -NH, wherein the remaining variables are as described above for Formula I.
- R Q and R T in the compound of Formula I, II, or III are each independently selected from H and (C 1 -C 4 ) alkyl, wherein the remaining variables are as described above for Formula I or the third embodiment.
- R Q and R T in the compound of Formula I, II, or III are each independently selected from H, CH (CH 3 ) 2 , and CH 3 , wherein the remaining variables are as described above for Formula I or the third embodiment.
- R Q in the compound of Formula I, II, or III is H and R T is selected from H, CH (CH 3 ) 2 , and CH 3 , wherein the remaining variables are as described above for Formula I or the third embodiment.
- R Q and R T are each H in the compound of Formula I, II, or III, wherein the remaining variables are as described above for Formula I or the third embodiment.
- a in the compound of Formula I, II, or III is selected from
- Z and Z’ are each independently selected from N or CH;
- R 1 , R 1A , and R 1AA are each independently selected from (C 1 -C 4 ) alkyl, halo (C 1 -C 4 ) alkyl, halo, (C 1 -C 4 ) alkoxy, and halo (C 1 -C 4 ) alkoxy;
- R 3 , R 3A , and R 3AA are each independently selected from hydrogen, halo, (C 1 -C 4 ) alkyl, halo (C 1 -C 4 ) alkyl, (C 1 -C 4 ) alkoxy, halo (C 1 -C 4 ) alkoxy, - (C 0 -C 4 ) alkylheterocyclyl, and - (C 0 -C 4 ) heteroaryl, wherein said heterocyclyl and heteroaryl are each optionally substituted with 1 to 3 groups selected from R Z ;
- R Z is is selected from (C 1 -C 4 ) alkyl, halo (C 1 -C 4 ) alkyl, halo, (C 1 -C 4 ) alkoxy, and halo (C 1 -C 4 ) alkoxy;
- R a and R b are each independently selected from hydrogen, (C 1 -C 4 ) alkyl, and halo (C 1 -C 4 ) alkyl;
- R 4 is (C 1 -C 4 ) alkyl
- R 5 and R 5A are each independently (C 1 -C 4 ) alkyl
- R 6 and R 6A are each independently hydrogen or (C 1 -C 4 ) alkyl
- R 7 is halo
- the wavy line indicates the point of attachment to linker L, wherein the remaining variables are as described above for Formula I or any one of the third or fourth embodiment.
- a in the compound of Formula I, II, or III is selected from wherein the remaining variables are as described above for Formula I or any one of the third or fourth embodiment.
- Z and Z’ are each CH, wherein the remaining variables are as described above for Formula I or any one of the third to fifth embodiments.
- R 1 , R 1A , and R 1AA are each (C 1 -C 4 ) alkyl, wherein the remaining variables are as described above for Formula I or any one of the third to sixth embodiments.
- R 1 , R 1A , and R 1AA are each isopropyl, wherein the remaining variables are as described above for Formula I or any one of the third to sixth embodiments.
- R 3 , R 3A , and R 3AA are each independently selected from hydrogen, - (C 1 -C 4 ) alkylheterocyclyl, and heteroaryl, wherein said heterocyclyl and heteroaryl are each optionally substituted with 1 to 3 groups selected from R Z , wherein the remaining variables are as described above for Formula I or any one of the third to seventh embodiments.
- R 3A is hydrogen, wherein the remaining variables are as described above for Formula I or any one of the third to seventh embodiments.
- R 3AA is hydrogen, wherein the remaining variables are as described above for Formula I or any one of the third to seventh embodiments.
- R 3 is selected from - (C 1 -C 4 ) alkyl (5-to 6-membered) heterocyclyl and fused 8-10 membered heteroaryl, each optionally substituted with 1 to 3 groups selected from R Z , wherein the remaining variables are as described above for Formula I or any one of the third to seventh embodiments.
- R 3 is selected from - (C 1 -C 4 ) morpholinyl, indolyl, piperazinyl, wherein said morpholinyl, indolyl, and piperazinyl are each optionally substituted with 1 to 3 groups selected from R Z , wherein the remaining variables are as described above for Formula I or any one of the third to seventh embodiments.
- R Z is (C 1 -C 4 ) alkyl, wherein the remaining variables are as described above for Formula I or any one of the third to eighth embodiments.
- R a is hydrogen; and R b is halo (C 1 -C 4 ) alkyl, wherein the remaining variables are as described above for Formula I or any one of the third to ninth embodiments.
- R a is hydrogen; and R b is CH 2 CF 3 , wherein the remaining variables are as described above for Formula I or any one of the third to ninth embodiments.
- R 4 is CH 3 , wherein the remaining variables are as described above for Formula I or any one of the third to tenth embodiments.
- R 5 and R 5A are each CH 3 , wherein the remaining variables are as described above for Formula I or any one of the third to eleventh embodiments.
- R 6 and R 6A are each hydrogen, wherein the remaining variables are as described above for Formula I or any one of the third to twelfth embodiments.
- R 7 is chloro, wherein the remaining variables are as described above for Formula I or any one of the third to thirteenth embodiments.
- L in the compound of Formula I, II, or III is selected from - (CH 2 ) r -HET 1 -X 1 -HET 2 - (CH 2 ) s -OC (O) -, - (CH 2 ) r -HET 1 -X 1 - (CH 2 ) q -HET 2 - (CH 2 ) s -OC (O) -, - (CH 2 ) r -HET 1 -X 1 -HET 2 - (CH 2 ) s -C (O) O- (CH 2 ) m -X 2 -, - (CH 2 ) r -HET 1 -HET 2 - (CH 2 ) s -C (O) - (CH 2 ) m -X 2 -, - (CH 2 ) r -HET 1 -HET 2 - (CH 2 ) s -C (O) - (CH 2 ) m
- R f is selected from hydrogen and (C 1 -C 4 ) alkyl
- X 1 and X 2 are each independently selected from CO and –CH 2 -;
- HET 1 , HET 2 , and HET 3 are each independently selected from monocyclic heterocyclyl, bicyclic heterocyclyl, monocyclic cycloalkyl, and phenyl; and
- R’ and R” are each independently selected from hydrogen and (C 1 -C 4 ) alkyl, wherein said (C 1 -C 4 ) alkyl is optionally substituted with phenyl or NHC (O) NH 2 , wherein the remaining variables are as described above for Formula I or any one of the third to fourteenth embodiments.
- L is selected from C (O) , -C (O) -X 1 -HET 1 -X 2 -, -X 1 -HET 1 -X 2 , -C (O) -HET 1 -X 1 -HET 2 -X 2 , and C (O) -X 1 -O-, wherein the remaining variables are as described above for Formula I or any one of the third to fourteenth embodiments.
- X 1 and X 2 are each –CH 2 -, wherein the remaining variables are as described above for Formula I or any one of the third to fifteenth embodiments.
- HET 1 , HET 2 , and HET 3 are each independently selected from monocyclic heterocyclyl and monocyclic cycloalkyl, wherein the remaining variables are as described above for Formula I or any one of the third to sixteenth embodiments.
- HET 1 and HET 2 , and HET 3 are each independently selected from piperizinyl and cyclohexyl, wherein the remaining variables are as described above for Formula I or any one of the third to sixteenth embodiments.
- L is selected from C (O) , and C (O) CH 2 O*, wherein *indicates the point of attachment to A, wherein the remaining variables are as described above for Formula I or any one of the third to sixteenth embodiments.
- cancer or tumor
- cancer cells are well known in the art and refer to the presence, e.g., in a subject, of cells possessing characteristics typical of cancer-causing cells, such as uncontrolled proliferation, immortality, metastatic potential, rapid growth and proliferation rate, decreased cell death/apoptosis, and certain characteristic morphological features. Cancer cells are often in the form of a solid tumor. However, cancer also includes non-solid tumors, e.g., blood tumors, e.g., leukemia, wherein the cancer cells are derived from bone marrow. As used herein, the term "cancer” includes pre-malignant as well as malignant cancers.
- Cancers include, but are not limited to, acoustic neuroma, acute leukemia, acute lymphocytic leukemia, acute myelocytic leukemia (monocytic, myeloblastic, adenocarcinoma, angiosarcoma, astrocytoma, myelomonocytic and promyelocytic) , acute T-cell leukemia, basal cell carcinoma, bile duct carcinoma, bladder cancer, brain cancer, breast cancer, bronchogenic carcinoma, cervical cancer, chondrosarcoma, chordoma, choriocarcinoma, chronic leukemia, chronic lymphocytic leukemia, chronic myelocytic (granulocytic) leukemia, chronic myelogenous leukemia, colon cancer, colorectal cancer, craniopharyngioma, cystadenocarcinoma, diffuse large B-cell lymphoma, Burkitt's lymphoma, dysproliferative changes (d
- cancers include primary cancer, metastatic cancer, oropharyngeal cancer, hypopharyngeal cancer, liver cancer, gall bladder cancer, bile duct cancer, small intestine cancer, urinary tract cancer, kidney cancer, urothelium cancer, female genital tract cancer, uterine cancer, gestational trophoblastic disease, male genital tract cancer, seminal vesicle cancer, testicular cancer, germ cell tumors, endocrine gland tumors, thyroid cancer, adrenal cancer, pituitary gland cancer, hemangioma, sarcoma arising from bone and soft tissues, Kaposi's sarcoma, nerve cancer, ocular cancer, meningial cancer, glioblastomas, neuromas, neuroblastomas, Schwannomas, solid tumors arising from hematopoietic malignancies such as leukemias, metastatic melanoma, recurrent or persistent ovarian epithelial cancer, fallopian tube cancer, primary peritoneal cancer,
- Solid tumor as used herein, is understood as any pathogenic tumor that can be palpated or detected using imaging methods as an abnormal growth having three dimensions.
- a solid tumor is differentiated from a blood tumor such as leukemia.
- cells of a blood tumor are derived from bone marrow; therefore, the tissue producing the cancer cells is a solid tissue that can be hypoxic.
- Tumor tissue or “tumorous tissue” are understood as cells, extracellular matrix, and other naturally occurring components associated with the solid tumor.
- a specific dosage and treatment regimen for any particular patient will depend upon a variety of factors, including the activity of the specific compound employed, the age, body weight, general health, sex, diet, time of administration, rate of excretion, drug combination, and the judgment of the treating physician and the severity of the particular disease being treated.
- the amount of a compound described herein in the composition will also depend upon the particular compound in the composition.
- a representative synthesis scheme for compound 001 is shown in below. Specific synthesis routes of intermediates are also shown.
- the following cancer cell lines were employed: ; MV4-11 human biphenotypic B myelomonocytic leukemia (ATCC, #CRL-9591) ; HCT-116 human colon carcinoma (ATCC, #CRL-247) . Cell lines were cultured essentially according to ATCC recommendations.
- HSP90 ⁇ (HSP90AA1) protein Binding of test compounds to HSP90 ⁇ (HSP90AA1) protein was measured by fluorescent polarization (FP) using the HSP90 ⁇ (N-terminal) Assay Kit (BPS Bioscience, #50298) , following the manufacturer’s instructions, except as noted. Fluorescently labeled HSP90-binding compound FITC-geldanamycin (5 nM final concentration) was provided and employed. A 2.5-fold serial dilution of each test compound ranging from 20 ⁇ M to 5.2 nM was assayed for binding to HSP90 ⁇ . After the final step of adding HSP90a protein to each assay well, plates were mixed by brief shaking, incubated at 25°C for 120 min, and fluorescence was measured using a PerkinElmer EnVision Plate Reader.
- Test compounds were prepared in DMSO at 1 mM and 1 mM propantheline or mevinolin working solutions were prepared in acetonitrile. Propantheline served as a positive control for human, dog and mouse plasma, while mevinolin was used a positive control for rat plasma. Assay plates were prewarmed at 37°C for 15 minutes before adding 398 ⁇ L of plasma. Then 2 ⁇ L of 1mM test compound and 2 ⁇ L of 1mM control compound were added to 398 ⁇ L of plasma to reach a final concentration of 5 ⁇ M for the test compound and 5 ⁇ M for the control compound. The final concentration of organic solvents was 0.5 %. Each assay was performed in duplicate.
- Plasma samples were incubated at 37°C. Aliquots of 50 ⁇ L of each plasma sample were then taken at 0, 1, 2, 4, 8 and 24 hours (Cpd 1-Cpd 10) or at 0, 15, 30, 60 and 120 min (Cpd 11-Cpd 26) . The reaction was halted by the addition of 450 ⁇ L cold methanol with 5%formic acid containing internal standards. All samples were vortexed for 10 minutes, followed by centrifugation at 3, 220 g for 30 minutes to precipitate proteins. From each sample 100 ⁇ L of supernatant was transferred to a new plate. Sample supernatants were diluted with ultrapure water and loaded on to a liquid chromatography mass spectrometer. Samples were analyzed by LC-MS/MS. All calculations were carried out using Microsoft Excel. Peak area ratios were determined from extracted ion chromatograms.
- the slope value, k was determined by linear regression of the natural logarithm of the remaining percentage of the parent drug vs. incubation time curve.
- Cpd 1-Cpd 10 were incubated at 0, 1, 2, 4, 8 and 24 hours Cpd 11-Cpd 26 at 0, 15, 30, 60 and 120 min
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Abstract
Description
Claims (35)
- A compound of the Formula I:
or a pharmaceutically acceptable salt thereof, whereinRQ and RT are each independently selected from H, optionally substituted (C1-C4) alkyl, optionally substituted aryl, and optionally substituted heteroaryl, or RQ and RT are taken together with the carbon they are attached to form an optionally substituted cycloalkyl or an optionally substituted heterocyclyl;X is absent or -NRW, wherein RW is H or (C1-C4) alkyl;L is a linker; andA is a chemical moiety that binds HSP90 protein. - The compound of Claim 1, wherein the compound is of the Formula II or III:
or a pharmaceutically acceptable salt thereof. - The compound of Claim 1 or 2, wherein the compound is of the Formula III:
or a pharmaceutically acceptable salt thereof. - The compound of any one of claims 1 to 3, or a pharmaceutically acceptable salt thereof, wherein X is absent or -NRW, wherein RW is H or CH3.
- The compound of any one of claims 1 to 4, or a pharmaceutically acceptable salt thereof, wherein X is absent or NH.
- The compound of any one of claims 1 to 5, or a pharmaceutically acceptable salt thereof, wherein RQ and RT are each independently selected from H and (C1-C4) alkyl.
- The compound of any one of claims 1 to 6, or a pharmaceutically acceptable salt thereof, wherein RQ and RT are each independently selected from H, CH (CH3) 2, and CH3.
- The compound of any one of claims 1 to 7, or a pharmaceutically acceptable salt thereof, wherein RQ is H and RT is selected from H, CH (CH3) 2, and CH3.
- The compound of any one of claims 1 to 8, or a pharmaceutically acceptable salt thereof, wherein RQ and RT are each H.
- The compound of any one of Claims 1 to 9, or a pharmaceutically acceptable salt thereof, wherein A is selected fromZ and Z’ are each independently selected from N or CH;R1, R1A, and R1AA are each independently selected from (C1-C4) alkyl, halo (C1-C4) alkyl, halo, (C1-C4) alkoxy, and halo (C1-C4) alkoxy;R3, R3A, and R3AA are each independently selected from hydrogen, halo, (C1-C4) alkyl, halo (C1-C4) alkyl, (C1-C4) alkoxy, halo (C1-C4) alkoxy, - (C0-C4) alkylheterocyclyl, and - (C0-C4) heteroaryl, wherein said heterocyclyl and heteroaryl are each optionally substituted with 1 to 3 groups selected from RZ;RZ is is selected from (C1-C4) alkyl, halo (C1-C4) alkyl, halo, (C1-C4) alkoxy, and halo (C1-C4) alkoxy;Ra and Rb are each independently selected from hydrogen, (C1-C4) alkyl, and halo (C1-C4) alkyl;R4 is (C1-C4) alkyl;R5 and R5A are each independently (C1-C4) alkyl;R6 and R6A are each independently hydrogen or (C1-C4) alkyl;R7 is halo; andthe wavy line indicates the point of attachment to linker L.
- The compound of any one of Claims 1 to 10, or a pharmaceutically acceptable salt thereof, wherein A is selected from
- The compound of Claim 10 or 11, or a pharmaceutically acceptable salt thereof, wherein Z and Z’ are each CH.
- The compound of any one of Claims 10 to 12, or a pharmaceutically acceptable salt thereof, wherein R1, R1A, and R1AA are each (C1-C4) alkyl.
- The compound of any one of Claims 10 to 13, or a pharmaceutically acceptable salt thereof, wherein R1, R1A, and R1AA are each isopropyl.
- The compound of any one of Claims 10 to 14, or a pharmaceutically acceptable salt thereof, wherein R3, R3A, and R3AA are each independently selected from hydrogen, - (C1-C4) alkylheterocyclyl, and heteroaryl, wherein said heterocyclyl and heteroaryl are each optionally substituted with 1 to 3 groups selected from RZ.
- The compound of any one of Claims 10 to 15, or a pharmaceutically acceptable salt thereof, wherein R3A is hydrogen.
- The compound of any one of Claims 10 to 16, or a pharmaceutically acceptable salt thereof, wherein R3AA is hydrogen.
- The compound of any one of Claims 10 to 17, or a pharmaceutically acceptable salt thereof, wherein R3 is selected from - (C1-C4) alkyl (5-to 6-membered) heterocyclyl and fused 8-10 membered heteroaryl, each optionally substituted with 1 to 3 groups selected from RZ.
- The compound of any one of Claims 10 to 18, or a pharmaceutically acceptable salt thereof, wherein R3 is selected from - (C1-C4) morpholinyl, indolyl, piperazinyl, wherein said morpholinyl, indolyl, and piperazinyl are each optionally substituted with 1 to 3 groups selected from RZ.
- The compound of any one of Claims 10 to 19, or a pharmaceutically acceptable salt thereof, wherein RZ is (C1-C4) alkyl.
- The compound of any one of Claims 10 to 20, or a pharmaceutically acceptable salt thereof, wherein Ra is hydrogen; and Rb is halo (C1-C4) alkyl.
- The compound of any one of Claims 10 to 21, or a pharmaceutically acceptable salt thereof, wherein Ra is hydrogen; and Rb is CH2CF3.
- The compound of any one of Claims 10 to 22, or a pharmaceutically acceptable salt thereof, wherein R4 is CH3.
- The compound of any one of Claims 10 to 23, or a pharmaceutically acceptable salt thereof, wherein R5 and R5A are each CH3.
- The compound of any one of Claims 10 to 24, or a pharmaceutically acceptable salt thereof, wherein R6 and R6A are each hydrogen.
- The compound of any one of Claims 10 to 25, or a pharmaceutically acceptable salt thereof, wherein R7 is chloro.
- The compound of any one of Claims 1 to 26, or a pharmaceutically acceptable salt thereof, whereinL is selected from - (CH2) r-HET1-X1-HET2- (CH2) s-OC (O) -, - (CH2) r-HET1-X1- (CH2) q-HET2- (CH2) s-OC (O) -, - (CH2) r-HET1-X1-HET2- (CH2) s-C (O) O- (CH2) m-X2-, - (CH2) r-HET1-HET2- (CH2) s-C (O) - (CH2) m-X2-, - (CH2) yOC (O) -, - (CH2) r-HET1- (CH2) w-S-S-HET2- (CH2) s-OC (O) -, - (CH2) r-HET1-X1- (CH2) s-OC (O) -, - (CH2) r-HET1-X1-HET2- (CH2) s-NHC (O) O- (CH2) m-X2-, - (CH2) r-HET1-C (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2-X1-HET1- (CH2) s-OC (O) -, - (CH2) rNRf (CH2) v-HET2-X1-HET1- (CH2) s-C (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2- (CH2) s-NHC (O) O- (CH2) m-X2-, - (CH2) r-HET3-OC (O) -, - (CH2) r-HET2-X1-HET3-OC (O) -, - (CH2) r-HET3-X1- (CH2) s-OC (O) -, - (CH2) r-HET3-X1-HET2-OC (O) -, -X1-HET3-OC (O) -, -X1-HET3-X2- (CH2) s-OC (O) -, - (CH2) r-HET1-HET2- (CH2) s-OC (O) -, - (CH2) r-HET1- (CH2) q-HET2- (CH2) s-OC (O) -, - (CH2) r-HET1-X1- (CH2) w-S-S-HET2- (CH2) s-OC (O) -, - (CH2) r-HET1-HET2- (CH2) s-NHC (O) O- (CH2) m-X2-, - (CH2) r-HET1-NHC (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2-X1- (CH2) q-HET1- (CH2) s-OC (O) -, - (CH2) rNRf (CH2) v-HET2-HET1- (CH2) s-C (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-OC (O) -, - (CH2) rNRf (CH2) v-HET2- (CH2) w-S-S-HET1- (CH2) s-OC (O) -, - (CH2) rNRf (CH2) v-HET2-X1- (CH2) s-OC (O) -, - (CH2) rNRf (CH2) v-HET2-X1-HET1- (CH2) s-NHC (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2-C (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2-X1- (CH2) s-OC (O) -, - (CH2) rNRf (CH2) v-HET2-X1- (CH2) s-C (O) - (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2-X1- (CH2) q-HET1- (CH2) s-NHC (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2-X1- (CH2) s-NHC (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2-X1-HET1- (CH2) s-NHC (O) O- (CH2) m-X2- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2-X1- (CH2) s-NHC (O) O- (CH2) m-X2-, - (CH2) r-HET1-X1- (CH2) q-HET3- (CH2) s-OC (O) -, - (CH2) r-HET1-X1-HET3- (CH2) s-C (O) O- (CH2) m-X2-, - (CH2) r-HET1-HET3- (CH2) s-C (O) - (CH2) m-X2-, - (CH2) r-HET1- (CH2) w-S-S-HET3- (CH2) s-OC (O) -, - (CH2) r-HET1-X1-HET3- (CH2) s-NHC (O) O- (CH2) m-X2-, - (CH2) r-HET3-C (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET2-X1-HET3- (CH2) s-OC (O) -, - (CH2) rNRf (CH2) v-HET3-X1-HET1- (CH2) s-C (O) O- (CH2) m-X2-, - (CH2) rNRf (CH2) v-HET3- (CH2) s-NHC (O) O- (CH2) m-X2-, -C (O) NH-CRR’-C (O) NH-CRR’-C (O) NHCRR’C (O) NH (CH2) m-X2-, -C (O) NH-CRR’-C (O) NH-CRR’-C (O) NH-HET2- (CH2) s-OC (O) -, C (O) , -C (O) -X1-HET1-X2-, -X1-HET1-X2, -C (O) -HET1-X1-HET2-X2, and C (O) -X1-O-;m, q, r, s, v, w, and y are each independently 0 to 4;Rf is selected from hydrogen and (C1-C4) alkyl;X1 and X2 are each independently selected from CO and –CH2-;HET1, HET2, and HET3 are each independently selected from monocyclic heterocyclyl, bicyclic heterocyclyl, monocyclic cycloalkyl, and phenyl; andR’ and R” are each independently selected from hydrogen and (C1-C4) alkyl, wherein said (C1-C4) alkyl is optionally substituted with phenyl or NHC (O) NH2.
- The compound of any one of Claims 1 to 27, or a pharmaceutically acceptable salt thereof, wherein L is selected from C (O) , -C (O) -X1-HET1-X2-, -X1-HET1-X2, -C (O) -HET1-X1-HET2-X2, and C (O) -X1-O-.
- The compound of Claim 27 or 28, or a pharmaceutically acceptable salt thereof, wherein X1 and X2 are each –CH2-.
- The compound of any one of Claims 27 to 29, or a pharmaceutically acceptable salt thereof, wherein HET1, HET2, and HET3 are each independently selected from monocyclic heterocyclyl and monocyclic cycloalkyl.
- The compound of any one of Claims 27 to 30, or a pharmaceutically acceptable salt thereof, wherein HET1 and HET2, and HET3 are each independently selected from piperizinyl and cyclohexyl.
- The compound of any one of Claims 27 to 30, or a pharmaceutically acceptable salt thereof, wherein L is selected from C (O) , and C (O) CH2O*, wherein *indicates the point of attachment to A.
- The compound of Claim 1, wherein the compound is selected from
or pharmaceutically acceptable salt of any of the foregoing. - A pharmaceutical composition comprising a compound of any one of Claims 1 to 33, or a pharmaceutically acceptable salt thereof; and a pharmaceutically acceptable carrier.
- A method of treating cancer comprising administering to a subject a therapeutically effective amount of a compound of any one of Claims 1 to 33, or a pharmaceutically acceptable salt thereof, or the composition of Claim 34.
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| WO2010117425A1 (en) * | 2009-03-31 | 2010-10-14 | Biogen Idec Ma Inc. | Certain substituted pyrimidines, pharmaceutical compositions thereof, and methods for their use |
| CN104470941A (en) * | 2012-04-16 | 2015-03-25 | 辛塔医药品有限公司 | Targeted therapeutics |
| CN106456795A (en) * | 2014-03-03 | 2017-02-22 | 辛塔医药品有限公司 | Targeted therapeutics |
| WO2022047008A1 (en) * | 2020-08-26 | 2022-03-03 | Tarveda Therapeutics, Inc. | Hsp90-binding conjugates and formulations thereof |
| WO2022235889A1 (en) * | 2021-05-05 | 2022-11-10 | Tva (Abc), Llc | Hsp90-binding conjugates and formulations thereof |
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| Publication number | Priority date | Publication date | Assignee | Title |
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| WO2010117425A1 (en) * | 2009-03-31 | 2010-10-14 | Biogen Idec Ma Inc. | Certain substituted pyrimidines, pharmaceutical compositions thereof, and methods for their use |
| CN104470941A (en) * | 2012-04-16 | 2015-03-25 | 辛塔医药品有限公司 | Targeted therapeutics |
| CN106456795A (en) * | 2014-03-03 | 2017-02-22 | 辛塔医药品有限公司 | Targeted therapeutics |
| WO2022047008A1 (en) * | 2020-08-26 | 2022-03-03 | Tarveda Therapeutics, Inc. | Hsp90-binding conjugates and formulations thereof |
| WO2022235889A1 (en) * | 2021-05-05 | 2022-11-10 | Tva (Abc), Llc | Hsp90-binding conjugates and formulations thereof |
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| Publication number | Priority date | Publication date | Assignee | Title |
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| WO2025207442A1 (en) * | 2024-03-23 | 2025-10-02 | Ranok Therapeutics (Hangzhou) Co. Ltd. | Methods and compositions for targeted protein degradation |
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