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WO2024171017A1 - Immunogenic composition against influenza - Google Patents

Immunogenic composition against influenza Download PDF

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Publication number
WO2024171017A1
WO2024171017A1 PCT/IB2024/051247 IB2024051247W WO2024171017A1 WO 2024171017 A1 WO2024171017 A1 WO 2024171017A1 IB 2024051247 W IB2024051247 W IB 2024051247W WO 2024171017 A1 WO2024171017 A1 WO 2024171017A1
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WO
WIPO (PCT)
Prior art keywords
rna
lnp
composition
polynucleotide
influenza
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/IB2024/051247
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French (fr)
Inventor
Pirada Suphaphiphat ALLEN
Sutapa Barua
Bakul Subodh BHATNAGAR
Adam Lee CAMPBELL
Bo Chen
Agota CSIKI-FEJER
Liyang CUI
Ramin Darvari
Ivna Padron DE SOUZA
Mark Duda
Kari Ann Sweeney EFFEREN
Pengbo Guo
Qianjing HE
Sue-Jean HONG
Fanyu Meng
Lynn Marie PHELAN
Pushkar Atul SARALKAR
Shuai SHI
Alicia SOLORZANO QUIJANO
Shruti TRIVEDI
Lawrence Gabriel Owen WEBB
Yajing ZHOU
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Pfizer Corp Belgium
Pfizer Corp SRL
Original Assignee
Pfizer Corp Belgium
Pfizer Corp SRL
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Pfizer Corp Belgium, Pfizer Corp SRL filed Critical Pfizer Corp Belgium
Priority to EP24705570.0A priority Critical patent/EP4665390A1/en
Publication of WO2024171017A1 publication Critical patent/WO2024171017A1/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

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    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/12Viral antigens
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P31/00Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
    • A61P31/12Antivirals
    • A61P31/14Antivirals for RNA viruses
    • A61P31/16Antivirals for RNA viruses for influenza or rhinoviruses
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/51Medicinal preparations containing antigens or antibodies comprising whole cells, viruses or DNA/RNA
    • A61K2039/53DNA (RNA) vaccination
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/54Medicinal preparations containing antigens or antibodies characterised by the route of administration
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/555Medicinal preparations containing antigens or antibodies characterised by a specific combination antigen/adjuvant
    • A61K2039/55511Organic adjuvants
    • A61K2039/55555Liposomes; Vesicles, e.g. nanoparticles; Spheres, e.g. nanospheres; Polymers
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/57Medicinal preparations containing antigens or antibodies characterised by the type of response, e.g. Th1, Th2
    • A61K2039/572Medicinal preparations containing antigens or antibodies characterised by the type of response, e.g. Th1, Th2 cytotoxic response
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/57Medicinal preparations containing antigens or antibodies characterised by the type of response, e.g. Th1, Th2
    • A61K2039/575Medicinal preparations containing antigens or antibodies characterised by the type of response, e.g. Th1, Th2 humoral response
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/70Multivalent vaccine
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2760/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssRNA viruses negative-sense
    • C12N2760/00011Details
    • C12N2760/16011Orthomyxoviridae
    • C12N2760/16111Influenzavirus A, i.e. influenza A virus
    • C12N2760/16134Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2760/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssRNA viruses negative-sense
    • C12N2760/00011Details
    • C12N2760/16011Orthomyxoviridae
    • C12N2760/16211Influenzavirus B, i.e. influenza B virus
    • C12N2760/16234Use of virus or viral component as vaccine, e.g. live-attenuated or inactivated virus, VLP, viral protein

Definitions

  • the invention relates to compositions and methods for the preparation, manufacture and therapeutic use of ribonucleic acid vaccines comprising polynucleotide molecules encoding one or more influenza antigens, such as hemagglutinin antigens.
  • BACKGROUND Influenza viruses are members of the orthomyxoviridae family, and are classified into three types (A, B, and C), based on antigenic differences between their nucleoprotein (NP) and matrix (M) protein.
  • the genome of influenza A virus includes eight molecules (seven for influenza C virus) of linear, negative polarity, single-stranded RNAs, which encode several polypeptides including: the RNA-directed RNA polymerase proteins (PB2, PB1 and PA) and nucleoprotein (NP), which form the nucleocapsid; the matrix proteins (M1, M2, which is also a surface-exposed protein embedded in the virus membrane); two surface glycoproteins, which project from the lipoprotein envelope: hemagglutinin (HA) and neuraminidase (NA); and nonstructural proteins (NS1 and NS2).
  • PB2, PB1 and PA RNA-directed RNA polymerase proteins
  • NP nucleoprotein
  • M1, M2 which is also a surface-exposed protein embedded in the virus membrane
  • HA hemagglutinin
  • NA neuraminidase
  • NS1 and NS2 nonstructural proteins
  • Hemagglutinin is the major envelope glycoprotein of influenza A and B viruses, and hemagglutinin-esterase (HE) of influenza C viruses is a protein homologous to HA.
  • HE hemagglutinin-esterase
  • a challenge for therapy and prophylaxis against influenza and other infections using traditional vaccines is the limitation of vaccines in breadth, providing protection only against closely related subtypes.
  • the length of time required to complete current standard influenza virus vaccine production processes inhibits the rapid development and production of an adapted vaccine in a pandemic situation.
  • compositions preferably immunogenic compositions, against influenza.
  • SUMMARY The unmet needs for improved compositions, preferably immunogenic compositions, against influenza, among other things, are provided herein.
  • the disclosure relates to an immunogenic composition
  • an immunogenic composition including: (i) a first ribonucleic acid (RNA) polynucleotide having an open reading frame encoding a first antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, and (ii) a second RNA polynucleotide having an open reading frame encoding a second antigen, said second antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the first and second RNA polynucleotides are formulated in a lipid nanoparticle (LNP).
  • the first and second antigens include hemagglutinin (HA), or an immunogenic fragment or variant thereof.
  • the first antigen includes an HA from a different subtype of influenza virus to the influenza virus antigenic polypeptide or an immunogenic fragment thereof of the second antigen.
  • the composition further includes (iii) a third antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the third antigen is from influenza virus but is from a different strain of influenza virus to both the first and second antigens.
  • the first, second and third RNA polynucleotides are formulated in a lipid nanoparticle.
  • the composition further includes (iv) a fourth RNA polynucleotide having an open reading frame encoding a fourth antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fourth antigen is from influenza virus but is from a different strain of influenza virus to the first, second and third antigens.
  • the first, second, third, and fourth RNA polynucleotides are formulated in a lipid nanoparticle.
  • each RNA polynucleotide includes a modified nucleotide.
  • the modified nucleotide is selected from the group consisting of pseudouridine, 1-methylpseudouridine, 2-thiouridine, 4′-thiouridine, 5-methylcytosine, 2-thio-1- methyl-1-deaza-pseudouridine, 2-thio-1-methyl-pseudouridine, 2-thio-5-aza-uridine, 2-thio- dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4-methoxy-2-thio- pseudouridine, 4-methoxy-pseudouridine, 4-thio-1-methyl-pseudouridine, 4-thio-pseudouridine, 5-aza-uridine, dihydropseudouridine, 5-methoxyuridine, and 2′-O-methyl uridine.
  • each RNA polynucleotide includes a 5′ terminal cap, a 5’ UTR, a 3’UTR, and a 3′ polyadenylation tail.
  • the 5′ terminal cap includes: .
  • the 5’ UTR 3’ UTR includes SEQ ID NO: 2.
  • the 3′ polyadenylation tail includes SEQ ID NO: 3.
  • the RNA polynucleotide has an integrity greater than 85%. In some embodiments, the RNA polynucleotide has a purity of greater than 85%.
  • the lipid nanoparticle includes 20-60 mol % ionizable cationic lipid, 5-25 mol % neutral lipid, 25-55 mol % cholesterol, and 0.5-5 mol % PEG-modified lipid.
  • the cationic lipid includes: .
  • the first antigen is HA from influenza A subtype H1 or an immunogenic fragment or variant thereof and the second antigen is HA from a different H1 strain to the first antigen or an immunogenic fragment or variant thereof.
  • the first and second antigens are HA from influenza A subtype H3 or an immunogenic fragment or variant thereof and wherein both antigens are derived from different strains of H3 influenza virus.
  • the first and second antigens are HA from influenza A subtype H1 or an immunogenic fragment or variant thereof and the third and fourth antigens are from influenza A subtype H3 or an immunogenic fragment or variant thereof and wherein the first and second antigens are derived from different strains of H1 virus and the third and fourth antigens are from different strains of H3 influenza virus.
  • at least the first and second RNA polynucleotides are formulated in a single lipid nanoparticle.
  • the first and second RNA polynucleotides are formulated in a single lipid nanoparticle.
  • the first, second, and third RNA polynucleotides are formulated in a single lipid nanoparticle.
  • the first, second, third, and fourth RNA polynucleotides are formulated in a single LNP.
  • each of the RNA polynucleotides is formulated in a single LNP, wherein each single LNP encapsulates the RNA polynucleotide encoding one antigen.
  • the first RNA polynucleotide is formulated in a first LNP; and the second RNA polynucleotide is formulated in a second LNP.
  • the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; and the third RNA polynucleotide is formulated in a third LNP.
  • the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; and the fourth RNA polynucleotide is formulated in a fourth LNP.
  • the disclosure relates to any of the immunogenic compositions described herein, for use in the eliciting an immune response against influenza.
  • the disclosure relates to a method of eliciting an immune response against influenza disease, including administering an effective amount of any of the immunogenic compositions described herein.
  • the disclosure relates to a method of purifying an RNA polynucleotide synthesized by in vitro transcription. The method includes ultrafiltration and diafiltration. In some embodiments, the method does not comprise a chromatography step.
  • the purified RNA polynucleotide is substantially free of contaminants comprising short abortive RNA species, long abortive RNA species, double- stranded RNA (dsRNA), residual plasmid DNA, residual in vitro transcription enzymes, residual solvent and/or residual salt.
  • the residual plasmid DNA is ⁇ 500 ng DNA/mg RNA.
  • the yield of the purified mRNA is about 70% to about 99%.
  • purity of the purified mRNA is between about 60% and about 100%. In some embodiments, purity of the purified mRNA is between about 85%-95%.
  • FIG.1A-H Functional Anti-HA Antibodies Elicited by Immunization of Mice With Monovalent or Quadrivalent LNP-Formulated modRNA Encoding Influenza HA as Measured By MNT.
  • FIG.1A depicts 50% neutralization titers 3 weeks post prime (against A/H1N1);
  • FIG.1B depicts 50% neutralization titers 2 weeks post boost (against A/H1N1);
  • FIG.1C depicts 50% neutralization titers 3 weeks post prime (against A/H3N2);
  • FIG.1D depicts 50% neutralization titers 2 weeks post boost (against A/H3N2);
  • FIG.1E depicts 50% neutralization titers 3 weeks post prime (against B/Yamagata);
  • FIG.1F depicts 50% neutralization titers 2 weeks post boost (against B/Yamagata);
  • FIG.1G depicts 50% neutralization titers 3 weeks post prime (against B/Victoria);
  • FIG.1H depicts 50% neutralization titers 2 weeks post boost (against B/Victoria).
  • FIG.2A-B depicts 50% neutralization titers 3 weeks post dose 1 against Wisconsin strain; FIG.2B depicts 50% neutralization titers 2 weeks post dose 2 against Wisconsin.
  • FIG.3A-C depicts 50% neutralization titers 3 weeks post dose 1 against B/Austria; FIG.3B depicts 50% neutralization titers 2 weeks post dose 2 (0.2 ug dose).
  • FIG.3C depicts 50% neutralization titers 2 weeks post dose 2 (0.05 ug dose).
  • FIG.4A-B FIG.4A depicts 90% neutralization titers 3 weeks post dose 1 against B/Austria; FIG.4B depicts 90% neutralization titers 2 weeks post dose 1 against B/Austria.
  • FIG.5 depicts percentage of HA positive cells following testing with 5 different LNP formulations, listed in Table 48.
  • FIG.6 depicts GMFI: HA-positive cells following testing with 5 different LNP formulations, listed in Table 48.
  • FIG.7 depicts percentage of live cells following testing with 5 different LNP formulations, listed in Table 48.
  • FIG.8 depicts percentage of live cells following testing with 5 different LNP formulations, listed in Table 48.
  • FIG.9A-B depicts percentage of HA positive cells following testing with 5 different LNP formulations, listed in Table 48.
  • FIG.9A depicts a comparison of LNPs having an N:P ratio of 10, LNPs having an N:P ratio of 6, and their respective fold change (EC50 cholesterol /EC50 cholesterol analog ) compared to benchmark LNPs
  • FIG.9B depicts a comparison of LNPs having an N:P ratio of 10, LNPs having an N:P ratio of 6, and their respective fold change (MFI cholesterol analog /MFI cholesterol ).
  • FIG.10A-B depicts a comparison of LNPs having an N:P ratio of 10, LNPs having an N:P ratio of 6, and their respective fold change (MFI cholesterol analog /MFI cholesterol ).
  • FIG.10A depicts a comparison of LNPs having sitosterol/cholesterol in a respective 6:4 ratio, LNPs having sitosterol/cholesterol in a respective 5:5 ratio, and LNPs having sitosterol/cholesterol in a respective 4:6 ratio, and their respective fold change (EC50 cholesterol /EC50 cholesterol analog ) compared to benchmark LNPs;
  • FIG.10B depicts a comparison of LNPs having an N:P ratio of 10, LNPs having an N:P ratio of 6, and their respective fold change (MFI cholesterol analog /MFI cholesterol ).
  • RNA vaccines that include polynucleotide encoding an influenza virus antigen.
  • Influenza virus RNA vaccines as provided herein may be used to induce a balanced immune response, comprising both cellular and humoral immunity, without many of the risks associated with DNA vaccination.
  • the virus is a strain of Influenza A or Influenza B or combinations thereof.
  • the disclosure relates to an immunogenic composition
  • an immunogenic composition including: (i) a first ribonucleic acid (RNA) polynucleotide having an open reading frame encoding a first antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, and (ii) a second RNA polynucleotide having an open reading frame encoding a second antigen, said second antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the first and second RNA polynucleotides are formulated in a lipid nanoparticle (LNP).
  • the first and second antigens include hemagglutinin (HA), or an immunogenic fragment or variant thereof.
  • the first antigen includes an HA from a different subtype of influenza virus to the influenza virus antigenic polypeptide or an immunogenic fragment thereof of the second antigen.
  • the composition further includes (iii) a third antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the third antigen is from influenza virus but is from a different strain of influenza virus to both the first and second antigens.
  • the first, second and third RNA polynucleotides are formulated in a lipid nanoparticle.
  • the composition further includes (iv) a fourth RNA polynucleotide having an open reading frame encoding a fourth antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fourth antigen is from influenza virus but is from a different strain of influenza virus to the first, second and third antigens.
  • the first, second, third, and fourth RNA polynucleotides are formulated in a lipid nanoparticle.
  • the RNA polynucleotides are mixed in desired ratios in a single vessel and are subsequently formulated into lipid nanoparticles.
  • first and second RNA polynucleotides are formulated in a single lipid nanoparticle.
  • the first, second, third, and fourth RNA polynucleotides are formulated in a single LNP. In some embodiments, the first, second, third, fourth, and fifth RNA polynucleotides are formulated in a single LNP. In some embodiments, the first, second, third, fourth, fifth, and sixth RNA polynucleotides are formulated in a single LNP. In some embodiments, the first, second, third, fourth, fifth, sixth, and seventh RNA polynucleotides are formulated in a single LNP. In some embodiments, the first, second, third, fourth, fifth, sixth, seventh, and eighth RNA polynucleotides are formulated in a single LNP.
  • the molar ratio of the first RNA polynucleotide to the second RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1.
  • the molar ratio of the first RNA polynucleotide to the second RNA polynucleotide is greater than 1:1.
  • the molar ratio of the first RNA polynucleotide to the third RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1.
  • the molar ratio of the first RNA polynucleotide to the third RNA polynucleotide is greater than 1:1.
  • the molar ratio of the first RNA polynucleotide to the fourth RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1.
  • the molar ratio of the first RNA polynucleotide to the fourth RNA polynucleotide is greater than 1:1.
  • the molar ratio of the first RNA polynucleotide to the fifth RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1.
  • the molar ratio of the first RNA polynucleotide to the fifth RNA polynucleotide is greater than 1:1.
  • the molar ratio of the first RNA polynucleotide to the sixth RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1.
  • the molar ratio of the first RNA polynucleotide to the sixth RNA polynucleotide is greater than 1:1.
  • the molar ratio of the first RNA polynucleotide to the seventh RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1.
  • the molar ratio of the first RNA polynucleotide to the seventh RNA polynucleotide is greater than 1:1.
  • the molar ratio of the first RNA polynucleotide to the eighth RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1.
  • the molar ratio of the first RNA polynucleotide to the eighth RNA polynucleotide is greater than 1:1.
  • the RNA molecule such as the first RNA molecule, is an saRNA.
  • saRNA self-amplifying RNA
  • replicon refer to RNA with the ability to replicate itself.
  • Self- amplifying RNA molecules may be produced by using replication elements derived from a virus or viruses, e.g., alphaviruses, and substituting the structural viral polypeptides with a nucleotide sequence encoding a polypeptide of interest.
  • a self-amplifying RNA molecule is typically a positive-strand molecule that may be directly translated after delivery to a cell, and this translation provides an RNA-dependent RNA polymerase which then produces both antisense and sense transcripts from the delivered RNA.
  • the delivered RNA leads to the production of multiple daughter RNAs.
  • These daughter RNAs, as well as collinear subgenomic transcripts, may be translated themselves to provide in situ expression of an encoded gene of interest, e.g., a viral antigen, or may be transcribed to provide further transcripts with the same sense as the delivered RNA which are translated to provide in situ expression of the protein of interest, e.g., an antigen.
  • the self-amplifying RNA includes at least one or more genes selected from any one of viral replicases, viral proteases, viral helicases and other nonstructural viral proteins.
  • the self-amplifying RNA may also include 5'- and 3 '-end tractive replication sequences, and optionally a heterologous sequence that encodes a desired amino acid sequence (e.g., an antigen of interest).
  • a subgenomic promoter that directs expression of the heterologous sequence may be included in the self-amplifying RNA.
  • the heterologous sequence e.g., an antigen of interest
  • the heterologous sequence may be fused in frame to other coding regions in the self-amplifying RNA and/or may be under the control of an internal ribosome entry site (IRES).
  • IRS internal ribosome entry site
  • the self-amplifying RNA molecule is not encapsulated in a virus- like particle.
  • Self-amplifying RNA molecules described herein may be designed so that the self- amplifying RNA molecule cannot induce production of infectious viral particles.
  • the self- amplifying RNA molecule is based on an alphavirus, such as Sinbis virus (SIN), Semliki forest virus and Venezuelan equine encephalitis virus (VEE)
  • one or more genes encoding viral structural proteins, such as capsid and/or envelope glycoproteins may be omitted.
  • a self-amplifying RNA molecule described herein encodes (i) an RNA- dependent RNA polymerase that may transcribe RNA from the self-amplifying RNA molecule and (ii) a polypeptide of interest, e.g., a viral antigen.
  • the polymerase may be an alphavirus replicase, e.g., including any one of alphavirus protein nsP1, nsP2, nsP3, nsP4, and any combination thereof.
  • the self-amplifying RNA molecules described herein may include one or more modified nucleotides (e.g., pseudouridine, N6-methyladenosine, 5- methylcytidine, 5-methyluridine). In some embodiments, the self- amplifying RNA molecules does not include a modified nucleotide (e.g., pseudouridine, N6- methyladenosine, 5- methylcytidine, 5-methyluridine).
  • the saRNA construct may encode at least one non-structural protein (NSP), disposed 5’ or 3’ of the sequence encoding at least one peptide or polypeptide of interest.
  • NSP non-structural protein
  • the sequence encoding at least one NSP is disposed 5’ of the sequences encoding the peptide or polypeptide of interest.
  • the sequence encoding at least one NSP may be disposed at the 5’ end of the RNA construct.
  • at least one non-structural protein encoded by the RNA construct may be the RNA polymerase nsP4.
  • the saRNA construct encodes nsP1, nsP2, nsP3 and, nsP4.
  • nsP1 is the viral capping enzyme and membrane anchor of the replication complex (RC).
  • nsP2 is an RNA helicase and the protease responsible for the ns polyprotein processing.
  • nsP3 interacts with several host proteins and may modulate protein poly- and mono-ADP-ribosylation.
  • nsP4 is the core viral RNA-dependent RNA polymerase.
  • the polymerase may be an alphavirus replicase, e.g., comprising one or more of alphavirus proteins nsP1, nsP2, nsP3, and nsP4. Whereas natural alphavirus genomes encode structural virion proteins in addition to the non- structural replicase polypeptide, in some embodiments, the self-amplifying RNA molecules do not encode alphavirus structural proteins.
  • the self-amplifying RNA may lead to the production of genomic RNA copies of itself in a cell, but not to the production of RNA that includes virions.
  • the inability to produce these virions means that, unlike a wild-type alphavirus, the self-amplifying RNA molecule cannot perpetuate itself in infectious form.
  • the alphavirus structural proteins which are necessary for perpetuation in wild-type viruses can be absent from self-amplifying RNAs of the present disclosure and their place can be taken by gene(s) encoding the immunogen of interest, such that the subgenomic transcript encodes the immunogen rather than the structural alphavirus virion proteins.
  • the self-amplifying RNA molecule may have two open reading frames.
  • the first (5') open reading frame can encode a replicase; the second (3') open reading frame can encode a polypeptide comprising an antigen of interest.
  • the RNA may have additional (e.g., downstream) open reading frames, e.g., to encode further antigens or to encode accessory polypeptides.
  • the second RNA or the saRNA molecule further includes (1) an alphavirus 5' replication recognition sequence, and (2) an alphavirus 3' replication recognition sequence.
  • the 5' sequence of the self-amplifying RNA molecule is selected to ensure compatibility with the encoded replicase.
  • self-amplifying RNA molecules described herein may also be designed to induce production of infectious viral particles that are attenuated or virulent, or to produce viral particles that are capable of a single round of subsequent infection.
  • the saRNA molecule is alphavirus-based.
  • Alphaviruses include a set of genetically, structurally, and serologically related arthropod-borne viruses of the Togaviridae family.
  • Exemplary viruses and virus subtypes within the alphavirus genus include Sindbis virus, Semliki Forest virus, Ross River virus, and Venezuelan equine encephalitis virus.
  • the self-amplifying RNA described herein may incorporate an RNA replicase derived from any one of semliki forest virus (SFV), Sindbis virus (SIN), Venezuelan equine encephalitis virus (VEE), Ross-River virus (RRV), or other viruses belonging to the alphavirus family.
  • the self-amplifying RNA described herein may incorporate sequences derived from a mutant or wild-type virus sequence, e.g., the attenuated TC83 mutant of VEEV has been used in saRNAs.
  • Alphavirus-based saRNAs are (+)-stranded saRNAs that may be translated after delivery to a cell, which leads to translation of a replicase (or replicase- transcriptase).
  • the replicase is translated as a polyprotein which auto-cleaves to provide a replication complex which creates genomic (-)-strand copies of the (+)-strand delivered RNA.
  • These (-)-strand transcripts may themselves be transcribed to give further copies of the (+)-stranded parent RNA and also to give a subgenomic transcript which encodes the desired gene product. Translation of the subgenomic transcript thus leads to in situ expression of the desired gene product by the infected cell.
  • Suitable alphavirus saRNAs may use a replicase from a Sindbis virus, a semliki forest virus, an eastern equine encephalitis virus, a Venezuelan equine encephalitis virus, or mutant variants thereof.
  • the self-amplifying RNA molecule is derived from or based on a virus other than an alphavirus, such as a positive-stranded RNA virus, and in particular a picornavirus, flavivirus, rubivirus, pestivirus, hepacivirus, calicivirus, or coronavirus.
  • Suitable wild- type alphavirus sequences are well-known and are available from sequence depositories, such as the American Type Culture Collection, Rockville, Md.
  • alphaviruses include Aura (ATCC VR-368), Bebaru virus (ATCC VR-600, ATCC VR-1240), Cabassou (ATCC VR-922), Chikungunya virus (ATCC VR-64, ATCC VR-1241), Eastern equine encephalomyelitis virus (ATCC VR-65, ATCC VR-1242), Fort Morgan (ATCC VR-924), Getah virus (ATCC VR-369, ATCC VR-1243), Kyzylagach (ATCC VR-927), Mayaro (ATCC VR- 66), Mayaro virus (ATCC VR-1277), Middleburg (ATCC VR-370), Mucambo virus (ATCC VR-580, ATCC VR-1244), Ndumu (ATCC VR-371), Pixuna virus (ATCC VR- 372, ATCC VR-1245), Ross River virus (ATCC VR-373, ATCC VR-1246), Semliki Forest (ATCC VR-67, ATCC VR-1247), Sindbis virus (ATCC VR-68, ATCC VR
  • the self-amplifying RNA molecules described herein are larger than other types of RNA (e.g., saRNA).
  • the self-amplifying RNA molecules described herein include at least about 4 kb.
  • the self-amplifying RNA may be equal to any one of, at least any one of, at most any one of, or between any two of 3 kb, 4 kb, 5 kb, 6 kb, 7 kb, 8 kb, 9 kb, 10 kb, 11 kb, 12 kb, 13 kb, 14 kb, 15 kb, 16 kb.
  • the self-amplifying RNA may include at least about 5 kb, at least about 6 kb, at least about 7 kb, at least about 8 kb, at least about 9 kb, at least about 10 kb, at least about 11 kb, at least about 12 kb, or more than 12 kb.
  • the self-amplifying RNA is about 4 kb to about 12 kb, about 5 kb to about 12 kb, about 6 kb to about 12 kb, about 7 kb to about 12 kb, about 8 kb to about 12 kb, about 9 kb to about 12 kb, about 10 kb to about 12 kb, about 11 kb to about 12 kb, about 5 kb to about 11 kb, about 5 kb to about 10 kb, about 5 kb to about 9 kb, about 5 kb to about 8 kb, about 5 kb to about 7 kb, about 5 kb to about 6 kb, about 6 kb to about 12 kb, about 6 kb to about 11 kb, about 6 kb to about 10 kb, about 6 kb to about 9 kb, about 6 kb to about 8 kb, about 6 kb to about 7 kb, about 7 kb
  • the self-amplifying RNA molecule may encode a single polypeptide antigen or, optionally, two or more of polypeptide antigens linked together in a way that each of the sequences retains its identity (e.g., linked in series) when expressed as an amino acid sequence.
  • the polypeptides generated from the self-amplifying RNA may then be produced as a fusion polypeptide or engineered in such a manner to result in separate polypeptide or peptide sequences.
  • the saRNA molecule may encode one polypeptide of interest or more, such as an antigen or more than one antigen, e.g., two, three, four, five, six, seven, eight, nine, ten, or more polypeptides.
  • one saRNA molecule may also encode more than one polypeptide of interest or more, such as an antigen, e.g., a bicistronic, or tricistronic RNA molecule that encodes different or identical antigens.
  • the term "linked" as used herein refers to a first amino acid sequence or polynucleotide sequence covalently or non-covalently joined to a second amino acid sequence or polynucleotide sequence, respectively.
  • the first amino acid or polynucleotide sequence can be directly joined or juxtaposed to the second amino acid or polynucleotide sequence or alternatively an intervening sequence can covalently join the first sequence to the second sequence.
  • the term "linked” means not only a fusion of a first RNA molecule to a RNA molecule at the 5’-end or the 3’-end, but also includes insertion of the whole first RNA molecule into any two nucleotides in the second RNA molecule.
  • the first second RNA molecule can be linked to a second RNA molecule by a phosphodiester bond or a linker.
  • the linker can be, e.g., a polynucleotide.
  • the self-amplifying RNA described herein may encode one or more polypeptide antigens that include a range of epitopes.
  • the self-amplifying RNA described herein may encode epitopes capable of eliciting either a helper T-cell response or a cytotoxic T-cell response or both.
  • the saRNA molecule is purified, e.g., such as by filtration that may occur via, e.g., ultrafiltration, diafiltration, or, e.g., tangential flow ultrafiltration/diafiltration.
  • Some embodiments of the disclosure are directed to a composition
  • a composition comprising a self- amplifying RNA molecule comprising a 5’ Cap, a 5’ untranslated region, a coding region comprising a sequence encoding an RNA-dependent RNA polymerase (also referred to as a “replicase”), a subgenomic promoter, such as one derived from an alphavirus, an open reading frame encoding a gene of interest (e.g., an antigen derived from influenza virus), a 3’ untranslated region, and a 3’ poly A sequence.
  • at least 5% of a total population of a particular nucleotide in the saRNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • the saRNA molecule does not include modified nucleotides, e.g., does not include modified nucleobases, and all of the nucleotides in the RNA molecule are conventional standard ribonucleotides A, U, G and C, with the exception of an optional 5' cap that may include, for example, 7-methylguanosine, which is further described below.
  • the saRNA molecule does not include modified nucleotides, e.g., does not include modified nucleobases, and all of the nucleotides in the RNA molecule are conventional standard ribonucleotides A, U, G and C, with the exception of an optional 5' cap that may include, for example, 7-methylguanosine, which is further described below.
  • the RNA may include a 5' cap comprising a 7'-methylguanosine, and the first 1, 2 or 3 5' ribonucleotides may be methylated at the 2' position of the ribose.
  • each RNA polynucleotide encoding a particular antigen is formulated in an individual LNP, such that each LNP encapsulates an RNA polynucleotide encoding identical antigens.
  • post-mix Such embodiments may be referred herein as "post-mix”.
  • the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; the fifth RNA polynucleotide is formulated in a fifth LNP; the sixth RNA polynucleotide is formulated in a sixth LNP; the seventh RNA polynucleotide is formulated in a seventh LNP; and the eighth RNA polynucleotide is formulated in an eighth LNP.
  • the molar ratio of the first LNP to the second LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the second LNP is greater than 1:1.
  • the molar ratio of the first LNP to the third LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the third LNP is greater than 1:1.
  • the molar ratio of the first LNP to the fourth LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the fourth LNP is greater than 1:1.
  • the molar ratio of the first LNP to the fifth LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the fifth LNP is greater than 1:1.
  • the molar ratio of the first LNP to the sixth LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the sixth LNP is greater than 1:1.
  • the molar ratio of the first LNP to the seventh LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the seventh LNP is greater than 1:1.
  • the molar ratio of the first LNP to the eighth LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the eighth LNP is greater than 1:1.
  • the inventors discovered that regardless of the process, the resulting ratio of RNA polynucleotide was comparable whether the plurality of RNA polynucleotides are mixed prior to formulation in an LNP (pre-mixed) or whether the RNA polynucleotides encoding a particular antigen is formulated in an individual LNP and the plurality of LNPs for different antigens are mixed (post-mixed).
  • pre-mixed the RNA polynucleotides encoding a particular antigen is formulated in an individual LNP and the plurality of LNPs for different antigens are mixed (post-mixed).
  • the mRNAs encoding influenza antigens are separately encapsulated (e.g., separate encapsulation of each mRNA encoding an influenza antigen; encapsulation of mRNA(s) encoding an influenza type A antigen in a first population of nanoparticles (e.g., LNPs) and encapsulation of mRNA(s) encoding an influenza type B antigen in a second population of nanoparticles (e.g., LNPs); or encapsulation of mRNA(s) encoding an influenza type A antigen in a first population of nanoparticles (e.g., LNPs) and encapsulation of each mRNA encoding an influenza type B antigen in a separate population of nanoparticles (e.g., LNPs)).
  • the composition comprises coencapsulated mRNAs encoding an influenza antigen.
  • a composition comprising (i) two or more different RNAs, each encoding an antigenic polypeptide (e.g., an HA protein) of an influenza type A virus (e.g., so that the two or more different RNAs, together, encode two or more different influenza A HA polypeptides), and (ii) two or more different RNAs, each encoding an antigenic polypeptide (e.g., an HA protein) of an influenza type B virus (e.g., so that the two or more different RNAs, together, encode two or more different influenza B HA polypeptides) are formulated in nanoparticles (e.g., LNPs) such that: Each RNA encoding an antigenic polypeptide of an influenza type A virus is encapsulated in a first population of nanoparticles and each RNA encoding an antigenic polypeptide of an influenza type B virus is encapsulated in nanoparticles (
  • the antigenic polypeptide encodes a hemagglutinin protein or immunogenic fragment thereof.
  • the hemagglutinin protein is H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, H18, or an immunogenic fragment thereof.
  • the hemagglutinin protein does not comprise a head domain.
  • the hemagglutinin protein comprises a portion of the head domain.
  • the hemagglutinin protein does not comprise a cytoplasmic domain.
  • the hemagglutinin protein comprises a portion of the cytoplasmic domain. In some embodiments, the truncated hemagglutinin protein comprises a portion of the transmembrane domain.
  • influenza vaccines comprising one or more RNA polynucleotides having an open reading frame encoding a hemagglutinin protein and a pharmaceutically acceptable carrier or excipient, formulated within a cationic lipid nanoparticle.
  • the hemagglutinin protein is selected from H1, H7 and H10.
  • the RNA polynucleotide further encodes neuraminidase (NA) protein.
  • the hemagglutinin protein is derived from a strain of Influenza A virus or Influenza B virus or combinations thereof.
  • the Influenza virus is selected from H1N1, H3N2, H7N9, and H10N8.
  • the virus is a strain of Influenza A or Influenza B or combinations thereof.
  • the strain of Influenza A or Influenza B is associated with birds, pigs, horses, dogs, humans, or non-human primates.
  • the antigenic polypeptide encodes a hemagglutinin protein or fragment thereof.
  • the hemagglutinin protein is H7 or H10 or a fragment thereof.
  • the hemagglutinin protein comprises a portion of the head domain (HA1). In some embodiments, the hemagglutinin protein comprises a portion of the cytoplasmic domain. In some embodiments, the truncated hemagglutinin protein. In some embodiments, the protein is a truncated hemagglutinin protein comprises a portion of the transmembrane domain. In some embodiments, the virus is selected from the group consisting of H7N9 and H10N8. Protein fragments, functional protein domains, and homologous proteins are also considered to be within the scope of polypeptides of interest.
  • an Influenza RNA composition includes an RNA encoding an antigenic fusion protein.
  • the encoded antigen or antigens may include two or more proteins (e.g., protein and/or protein fragment) joined together.
  • the protein to which a protein antigen is fused does not promote a strong immune response to itself, but rather to the influenza antigen.
  • Antigenic fusion proteins retain the functional property from each original protein.
  • the antigen specific immune response comprises a T cell response.
  • the antigen specific immune response comprises a B cell response.
  • the antigen specific immune response comprises both a T cell response and a B cell response.
  • the method of producing an antigen specific immune response involves a single administration of the vaccine.
  • the vaccine is administered to the subject by intradermal, intramuscular injection, subcutaneous injection, intranasal inoculation, or oral administration.
  • the RNA (e.g., mRNA) polynucleotides or portions thereof may encode one or more polypeptides or fragments thereof of an influenza strain as an antigen.
  • the present disclosure relates to mRNA vaccines in general.
  • mRNA vaccine platforms are available in the prior art.
  • the basic structure of in vitro transcribed (IVT) mRNA closely resembles “mature” eukaryotic mRNA and includes (i) a protein-encoding open reading frame (ORF), flanked by (ii) 5′ and 3′ untranslated regions (UTRs), and at the end sides (iii) a 7- methyl guanosine 5′ cap structure and (iv) a 3′ poly(A) tail.
  • ORF protein-encoding open reading frame
  • UTRs untranslated regions
  • modified nucleosides mRNA transcripts referred to as “nucleoside-modified mRNA” can be produced with reduced immunostimulatory activity, and therefore an improved safety profile can be obtained.
  • modified nucleosides allow the design of mRNA vaccines with strongly enhanced stability and translation capacity, as they can avoid the direct antiviral pathways that are induced by type IFNs and are programmed to degrade and inhibit invading mRNA.
  • the replacement of uridine with pseudouridine in IVT mRNA reduces the activity of 2′- 5′-oligoadenylate synthetase, which regulates the mRNA cleavage by RNase L.
  • lower activities are measured for protein kinase R, an enzyme that is associated with the inhibition of the mRNA translation process.
  • other approaches have been validated to increase the translation capacity and stability of mRNA.
  • One example is the development of “sequence-engineered mRNA”.
  • mRNA expression can be strongly increased by sequence optimizations in the ORF and UTRs of mRNA, for instance by enriching the GC content, or by selecting the UTRs of natural long-lived mRNA molecules.
  • Another approach is the design of “self-amplifying mRNA” constructs. These are mostly derived from alphaviruses and contain an ORF that is replaced by the antigen of interest together with an additional ORF encoding viral replicase. The latter drives the intracellular amplification of mRNA and can therefore significantly increase the antigen expression capacity. Also, several modifications have been implemented at the end structures of mRNA.
  • Anti- reverse cap (ARCA) modifications can ensure the correct cap orientation at the 5′ end, which yields almost complete fractions of mRNA that can efficiently bind the ribosomes.
  • Other cap modifications such as phosphorothioate cap analogs, can further improve the affinity towards the eukaryotic translation initiation factor 4E, and increase the resistance against the RNA decapping complex.
  • the potency of mRNA to trigger innate immune responses can be further improved, but to the detriment of translation capacity.
  • antigen expression can be diminished, but stronger immune-stimulating capacities can be obtained.
  • the invention relates to an immunogenic composition
  • an mRNA molecule that encodes one or more polypeptides or fragments thereof of an influenza strain as an antigen.
  • the mRNA molecule comprises a nucleoside-modified mRNA.
  • mRNA useful in the disclosure typically include a first region of linked nucleosides encoding a polypeptide of interest (e.g., a coding region), a first flanking region located at the 5 '-terminus of the first region (e.g., a 5 -UTR), a second flanking region located at the 3 '-terminus of the first region (e.g., a 3 -UTR), at least one 5 '-cap region, and a 3 '-stabilizing region.
  • the mRNA of the disclosure further includes a poly-A region or a Kozak sequence (e.g., in the 5 '-UTR).
  • mRNA of the disclosure may contain one or more intronic nucleotide sequences capable of being excised from the polynucleotide.
  • mRNA of the disclosure may include a 5' cap structure, a chain terminating nucleotide, a stem loop, a poly A sequence, and/or a polyadenylation signal. Any one of the regions of a nucleic acid may include one or more alternative components (e.g., an alternative nucleoside).
  • the 3 '-stabilizing region may contain an alternative nucleoside such as an L-nucleoside, an inverted thymidine, or a 2'-0-methyl nucleoside and/or the coding region, 5 '-UTR, 3 '-UTR, or cap region may include an alternative nucleoside such as a 5-substituted uridine (e.g., 5- methoxyuridine), a 1 -substituted pseudouridine (e.g., 1-methyl-pseudouridine), and/or a 5- substituted cytidine (e.g., 5-methyl-cytidine).
  • a 5-substituted uridine e.g., 5- methoxyuridine
  • a 1 -substituted pseudouridine e.g., 1-methyl-pseudouridine
  • a 5- substituted cytidine e.g., 5-methyl-cytidine
  • compositions described herein comprise at least one RNA polynucleotide, such as a mRNA (e.g., modified mRNA).
  • mRNA for example, is transcribed in vitro from template DNA, referred to as an “in vitro transcription template.”
  • an in vitro transcription template encodes a 5′ untranslated (UTR) region, contains an open reading frame, and encodes a 3′ UTR and a polyA tail.
  • UTR untranslated
  • a “5′ untranslated region” refers to a region of an mRNA that is directly upstream (i.e., 5′) from the start codon (i.e., the first codon of an mRNA transcript translated by a ribosome) that does not encode a polypeptide.
  • the 5’ UTR comprises SEQ ID NO: 1.
  • a “3′ untranslated region” refers to a region of an mRNA that is directly downstream (i.e., 3′) from the stop codon (i.e., the codon of an mRNA transcript that signals a termination of translation) that does not encode a polypeptide.
  • the 3’ UTR comprises SEQ ID NO: 2.
  • An “open reading frame” is a continuous stretch of DNA beginning with a start codon (e.g., methionine (ATG)), and ending with a stop codon (e.g., TAA, TAG or TGA) and encodes a polypeptide.
  • a “polyA tail” is a region of mRNA that is downstream, e.g., directly downstream (i.e., 3′), from the 3′ UTR that contains multiple, consecutive adenosine monophosphates.
  • a polyA tail may contain 10 to 300 adenosine monophosphates.
  • a polyA tail may contain 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 110, 120, 130, 140, 150, 160, 170, 180, 190, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290 or 300 adenosine monophosphates.
  • a polyA tail contains 50 to 250 adenosine monophosphates.
  • the poly(A) tail functions to protect mRNA from enzymatic degradation, e.g., in the cytoplasm, and aids in transcription termination, export of the mRNA from the nucleus and translation.
  • a polynucleotide includes 200 to 3,000 nucleotides.
  • a polynucleotide may include 200 to 500, 200 to 1000, 200 to 1500, 200 to 3000, 500 to 1000, 500 to 1500, 500 to 2000, 500 to 3000, 1000 to 1500, 1000 to 2000, 1000 to 3000, 1500 to 3000, or 2000 to 3000 nucleotides).
  • a LNP includes one or more RNAs, and the one or more RNAs, lipids, and amounts thereof may be selected to provide a specific N:P ratio.
  • the N:P ratio of the composition refers to the molar ratio of nitrogen atoms in one or more lipids to the number of phosphate groups in an RNA. In general, a lower N:P ratio is preferred.
  • the one or more RNA, lipids, and amounts thereof may be selected to provide an N:P ratio from about 2: 1 to about 30:1, such as 2:1, 3:1, 4:1, 5:1, 6:1, 7:1, 8:1, 9:1, 10:1, 12:1, 14:1, 16:1, 18:1, 20:1, 22: 1, 24: 1, 26: 1 , 28: 1 , or 30: 1. In certain embodiments, the N:P ratio may be from about 2: 1 to about 8: 1.
  • the N:P ratio is from about 5 : 1 to about 8: 1.
  • the N:P ratio may be about 5.0: 1 , about 5.5 : 1, about 5.67: 1, about 6.0: 1, about 6.5: 1 , or about 7.0: 1.
  • the N:P ratio may be about 5.67: 1.
  • the composition comprises a second LNP, wherein the second LNP does not encapsulate a polynucleotide as described in WO2023057930, the entirety of which is incorporated herein by reference.
  • compositions and methods described herein relate to frozen or lyophilized lipid nanoparticles encapsulating or associated with RNA in the presence of a cryoprotectant, preferably a carbohydrate cryoprotectant, and/or further in the presence of lipid nanoparticles that are devoid of nucleic acid, (e.g., not encapsulating and not associated with RNA (also referred herein as “blank” LNPs), or liposomes, or a higher cryoprotectant concentration) resulting in a composition comprising LNPs encapsulating RNA or associated with RNA that is characterized by, among other things, an improved integrity of the RNA after completion of the respective freezing or lyophilization process and which is further characterized by increased storage stability, such as, for example, with respect to storage for extended periods and/or under non-cooling conditions, as compared to a composition comprising lipid nanoparticles encapsulating or associated with RNA in the absence of the blank LNPs, or liposomes
  • the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA, a second lipid nanoparticle that is devoid of nucleic acid, and a cryoprotectant that results in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine.
  • the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA and an increased cryoprotectant concentration that results in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine.
  • the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA and a second lipid nanoparticle that is devoid of nucleic acid that results in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine.
  • the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA and a liposome that results in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine.
  • the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA, a liposome, and an increased cryoprotectant concentration that result in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine.
  • a pharmaceutical composition such as, for example, an immunogenic composition or vaccine.
  • the compositions and methods thereof described herein are suitable for use at an industrial scale. The methods described herein may be used to produce, for example, a frozen or lyophilized composition comprising LNPs encapsulating or associated with RNA having the above-mentioned properties in a reproducible and cost- effective manner.
  • composition comprising LNPs encapsulating or associated with RNA may advantageously be stored, shipped and applied, e.g., for example as a vaccine, without a cold chain, while the integrity and the biological activity of the RNA in the composition remain unexpectedly high.
  • mRNA of the disclosure may include one or more naturally occurring components, including any of the canonical nucleotides A (adenosine), G (guanosine), C (cytosine), U (uridine), or T (thymidine).
  • nucleotides comprising (a) the 5'-UTR, (b) the open reading frame (ORF), (c) the 3 '-UTR, (d) the poly A tail, and any combination of (a, b, c, or d above) comprise naturally occurring canonical nucleotides A (adenosine), G (guanosine), C (cytosine), U (uridine), or T (thymidine).
  • mRNA of the disclosure may include one or more alternative components, as described herein, which impart useful properties including increased stability and/or the lack of a substantial induction of the innate immune response of a cell into which the polynucleotide is introduced.
  • a modRNA may exhibit reduced degradation in a cell into which the modRNA is introduced, relative to a corresponding unaltered mRNA.
  • These alternative species may enhance the efficiency of protein production, intracellular retention of the polynucleotides, and/or viability of contacted cells, as well as possess reduced immunogenicity.
  • mRNA of the disclosure may include one or more modified (e.g., altered or alternative) nucleobases, nucleosides, nucleotides, or combinations thereof.
  • the mRNA useful in a LNP can include any useful modification or alteration, such as to the nucleobase, the sugar, or the internucleoside linkage (e.g., to a linking phosphate / to a phosphodiester linkage / to the phosphodiester backbone).
  • alterations e.g., one or more alterations are present in each of the nucleobase, the sugar, and the internucleoside linkage.
  • RNAs ribonucleic acids
  • TAAs threose nucleic acids
  • GAAs glycol nucleic acids
  • PNAs peptide nucleic acids
  • LNAs locked nucleic acids
  • nucleotide e.g., purine or pyrimidine, or any one or more or all of A, G, U, C
  • nucleotide X in a mRNA may or may not be uniformly altered in a mRNA, or in a given predetermined sequence region thereof.
  • all nucleotides X in a mRNA are altered, wherein X may any one of nucleotides A, G, U, C, or any one of the combinations A+G, A+U, A+C, G+U, G+C, U+C, A+G+U, A+G+C, G+U+C or A+G+C.
  • nucleotide analogs or other alteration(s) may be located at any position(s) of a polynucleotide such that the function of the polynucleotide is not substantially decreased.
  • An alteration may also be a 5'- or 3 '-terminal alteration.
  • the polynucleotide includes an alteration at the 3 '-terminus.
  • the polynucleotide may contain from about 1% to about 100% alternative nucleotides (either in relation to overall nucleotide content, or in relation to one or more types of nucleotide, i.e., any one or more of A, G, U or C) or any intervening percentage (e.g., from 1% to 20%, from 1% to 25%, from 1% to 50%, from 1% to 60%, from 1% to 70%, from 1% to 80%, from 1% to 90%, from 1% to 95%, from 10% to 20%, from 10% to 25%, from 10% to 50%, from 10% to 60%, from 10% to 70%, from 10% to 80%, from 10% to 90%, from 10% to 95%, from 10% to 100%, from 20% to 25%, from 20% to 50%, from 20% to 60%, from 20% to 70%, from 20% to 80%, from 20% to 90%, from 20% to 95%, from 20% to 100%, from 50% to 60%, from 50% to 70%, from 50% to 80%, from 50% to 90%, from 50% to 95%, from 50% to 100%, from
  • Polynucleotides may contain at a minimum zero and at maximum 100% alternative nucleotides, or any intervening percentage, such as at least 5% alternative nucleotides, at least 10% alternative nucleotides, at least 25% alternative nucleotides, at least 50% alternative nucleotides, at least 80% alternative nucleotides, or at least 90% alternative nucleotides.
  • polynucleotides may contain an alternative pyrimidine such as an alternative uracil or cytosine.
  • At least 5%, at least 10%, at least 25%, at least 50%, at least 80%, at least 90% or 100% of the uracil in a polynucleotide is replaced with an alternative uracil (e.g., a 5-substituted uracil).
  • the alternative uracil can be replaced by a compound having a single unique structure or can be replaced by a plurality of compounds having different structures (e.g., 2, 3, 4 or more unique structures).
  • cytosine in the polynucleotide is replaced with an alternative cytosine (e.g., a 5-substituted cytosine).
  • the alternative cytosine can be replaced by a compound having a single unique structure or can be replaced by a plurality of compounds having different structures (e.g., 2, 3, 4 or more unique structures).
  • nucleic acids do not substantially induce an innate immune response of a cell into which the polynucleotide (e.g., mRNA) is introduced.
  • the mRNA comprises one or more alternative nucleoside or nucleotides.
  • the alternative nucleosides and nucleotides can include an alternative nucleobase.
  • a nucleobase of a nucleic acid is an organic base such as a purine or pyrimidine or a derivative thereof.
  • a nucleobase may be a canonical base (e.g., adenine, guanine, uracil, thymine, and cytosine).
  • nucleobases can be altered or wholly replaced to provide polynucleotide molecules having enhanced properties, e.g., increased stability such as resistance to nucleases.
  • Non-canonical or modified bases may include, for example, one or more substitutions or modifications including but not limited to alkyl, aryl, halo, oxo, hydroxyl, alkyloxy, and/or thio substitutions; one or more fused or open rings; oxidation; and/or reduction.
  • the nucleobase is an alternative uracil.
  • nucleobases and nucleosides having an alternative uracil include pseudouridine ( ⁇ ), pyridin-4- one ribonucleoside, 5-aza-uracil, 6-aza-uracil, 2-thio-5-aza-uracil, 2-thio-uracil (s2U), 4-thio- uracil (s4U), 4-thio-pseudouridine, 2-thio-pseudouridine, 5 -hydroxy -uracil (ho5U), 5-aminoallyl- uracil, 5-halo-uracil (e.g., 5-iodo-uracil or 5-bromo-uracil), 3-methyl-uracil (m U), 5-methoxy- uracil (mo5U), uracil 5-oxyacetic acid (cmo5U), uracil 5-oxyacetic acid methyl ester (mcmo5U), 5-carboxymethyl-uracil (cm5U), 1 -
  • the nucleobase is an alternative cytosine.
  • Exemplary nucleobases and nucleosides having an alternative cytosine include 5-aza-cytosine, 6-aza- cytosine, pseudoisocytidine, 3-methyl-cytosine (m3C), N4-acetyl-cytosine (ac4C), 5-formyl- cytosine (f5C), N4-methyl-cytosine (m4C), 5-methyl-cytosine (m5C), 5-halo-cytosine (e.g., 5- iodo-cytosine), 5-hydroxymethyl-cytosine (hm5C), 1-methyl-pseudoisocytidine, pyrrolo- cytosine, pyrrolo-pseudoisocytidine, 2-thio-cytosine (s2C), 2-thio-5-methyl-cytosine, 4-thio- pseudoisocy tidine, 4-thio- 1 -methy 1-p
  • the nucleobase is an alternative adenine.
  • Exemplary nucleobases and nucleosides having an alternative adenine include 2-amino-purine, 2,6- diaminopurine, 2-amino-6-halo-purine (e.g., 2-amino-6-chloro-purine), 6-halo-purine (e.g., 6- chloro-purine), 2-amino-6-methyl-purine, 8-azido-adenine, 7-deaza-adenine, 7-deaza-8-aza- adenine, 7-deaza-2-amino-purine, 7-deaza-8-aza-2-amino-purine, 7-deaza-2,6-diaminopurine, 7-deaza-8-aza-2,6-diaminopurine, 1 -methy 1-adenine (ml A), 2-methyl-adenine (m2A), N6- methyl-adenine (m6A), 2-
  • the nucleobase is an alternative guanine.
  • Exemplary nucleobases and nucleosides having an alternative guanine include inosine (I), 1-methyl-inosine (mil), wyosine (imG), methylwyosine (mimG), 4-demethyl-wyosine (imG-14), isowyosine (imG2), wybutosine (yW), peroxywybutosine (o2yW), hydroxywybutosine (OHyW), undermodified hydroxywybutosine (OHyW*), 7-deaza-guanine, queuosine (Q), epoxyqueuosine (oQ), galactosyl-queuosine (galQ), mannosyl-queuosine (manQ), 7-cyano-7-deaza-guanine (preQO), 7-aminomethyl-7-deaza-guanine (preQl), archaeo
  • the alternative nucleobase of a nucleotide can be independently a purine, a pyrimidine, a purine or pyrimidine analog.
  • the nucleobase can be an alternative to adenine, cytosine, guanine, uracil, or hypoxanthine.
  • the nucleobase can also include, for example, naturally-occurring and synthetic derivatives of a base, including pyrazolo[3,4-d]pyrimidines, 5-methylcytosine (5-me-C), 5-hydroxymethyl cytosine, xanthine, hypoxanthine, 2-aminoadenine, 6-methyl and other alkyl derivatives of adenine and guanine, 2- propyl and other alkyl derivatives of adenine and guanine, 2-thiouracil, 2-thiothymine and 2- thiocytosine, 5-propynyl uracil and cytosine, 6-azo uracil, cytosine and thymine, 5-uracil (pseudouracil), 4-thiouracil, 8-halo (e.g., 8-bromo), 8-amino, 8-thiol, 8-thioalkyl, 8-hydroxy and other 8-substituted adenines and
  • each letter refers to the representative base and/or derivatives thereof, e.g., A includes adenine or adenine analogs, e.g., 7-deaza adenine).
  • the mRNA may include a 5 '-cap structure.
  • the 5 '-cap structure of a polynucleotide is involved in nuclear export and increasing polynucleotide stability and binds the mRNA Cap Binding Protein (CBP), which is responsible for polynucleotide stability in the cell and translation competency through the association of CBP with poly -A binding protein to form the mature cyclic mRNA species.
  • CBP mRNA Cap Binding Protein
  • the cap further assists the removal of 5 '-proximal introns removal during mRNA splicing.
  • Endogenous polynucleotide molecules may be 5 '-end capped generating a 5 '-ppp-5' - triphosphate linkage between a terminal guanosine cap residue and the 5 '-terminal transcribed sense nucleotide of the polynucleotide.
  • This 5 '-guanylate cap may then be methylated to generate an N7-methyl-guanylate residue.
  • the ribose sugars of the terminal and/or anteterminal transcribed nucleotides of the 5 ' end of the polynucleotide may optionally also be 2'-0- methylated.5 '-decapping through hydrolysis and cleavage of the guanylate cap structure may target a polynucleotide molecule, such as an mRNA molecule, for degradation. Alterations to polynucleotides may generate a non-hydrolyzable cap structure preventing decapping and thus increasing polynucleotide half-life. Because cap structure hydrolysis requires cleavage of 5 '-ppp-5' phosphorodiester linkages, alternative nucleotides may be used during the capping reaction.
  • a Vaccinia Capping Enzyme from New England Biolabs may be used with a-thio-guanosine nucleotides according to the manufacturer's instructions to create a phosphorothioate linkage in the 5 '-ppp-5 ' cap.
  • Additional alternative guanosine nucleotides may be used such as a-methyl- phosphonate and seleno-phosphate nucleotides.
  • Additional alterations include, but are not limited to, 2'-0-methylation of the ribose sugars of 5'-terminal and/or 5 '-anteterminal nucleotides of the polynucleotide (as mentioned above) on the 2'-hydroxy group of the sugar.
  • Multiple distinct 5 '-cap structures can be used to generate the 5 '-cap of an mRNA molecule.
  • Cap analogs which herein are also referred to as synthetic cap analogs, chemical caps, chemical cap analogs, or structural or functional cap analogs, differ from natural (i.e., endogenous, wild-type, or physiological) 5 '-caps in their chemical structure, while retaining cap function.
  • Cap analogs may be chemically (i.e., non-enzymatically) or enzymatically synthesized and/linked to a polynucleotide.
  • the Anti-Reverse Cap Analog (ARCA) cap contains two guanosines linked by a 5 '-5 '-triphosphate group, wherein one guanosine contains an N7- methyl group as well as a 3'-0-methyl group (i.e., N7, '-0-dimethyl-guanosine-5 '-triphosphate-5 '-guanosine, m7G-3'mppp-G, which may equivalently be designated 3' 0-Me-m7G(5')ppp(5')G).
  • the 3'-0 atom of the other, unaltered, guanosine becomes linked to the 5 '-terminal nucleotide of the capped polynucleotide (e.g., an mRNA).
  • the N7- and 3'-0-methylated guanosine provides the terminal moiety of the capped polynucleotide (e.g., mRNA).
  • Another exemplary cap is mCAP, which is similar to ARCA but has a 2'-0-methyl group on guanosine (i.e., N7,2'-0- dimethyl-guanosine-5 '-triphosphate-5 '-guanosine, m7Gm- ppp-G).
  • a cap may be a dinucleotide cap analog.
  • the dinucleotide cap analog may be modified at different phosphate positions with a boranophosphate group or a phophoroselenoate group such as the dinucleotide cap analogs described in US Patent No. 8,519,110, the cap structures of which are herein incorporated by reference.
  • a cap analog may be a N7-(4-chlorophenoxy ethyl) substituted dinucleotide cap analog known in the art and/or described herein.
  • Non-limiting examples of N7- (4- chlorophenoxy ethyl) substituted dinucleotide cap analogs include a N7-(4- chlorophenoxyethyl)-G(5 )ppp(5 ')G and a N7-(4-chlorophenoxyethyl)-m3 '-OG(5 )ppp(5 ')G cap analog (see, e.g., the various cap analogs and the methods of synthesizing cap analogs described in Kore et al. Bioorganic & Medicinal Chemistry 201321 :4570-4574; the cap structures of which are herein incorporated by reference).
  • a cap analog useful in the polynucleotides of the present disclosure is a 4-chloro/bromophenoxy ethyl analog. While cap analogs allow for the concomitant capping of a polynucleotide in an in vitro transcription reaction, up to 20% of transcripts remain uncapped. This, as well as the structural differences of a cap analog from endogenous 5 '-cap structures of polynucleotides produced by the endogenous, cellular transcription machinery, may lead to reduced translational competency and reduced cellular stability. Alternative polynucleotides may also be capped post-transcriptionally, using enzymes, in order to generate more authentic 5'-cap structures.
  • the phrase "more authentic” refers to a feature that closely mirrors or mimics, either structurally or functionally, an endogenous or wild type feature. That is, a “more authentic” feature is better representative of an endogenous, wild-type, natural or physiological cellular function, and/or structure as compared to synthetic features or analogs of the prior art, or which outperforms the corresponding endogenous, wild-type, natural, or physiological feature in one or more respects.
  • Non-limiting examples of more authentic 5 '-cap structures useful in the polynucleotides of the present disclosure are those which, among other things, have enhanced binding of cap binding proteins, increased half-life, reduced susceptibility to 5'-endonucleases, and/or reduced 5'- decapping, as compared to synthetic 5 '-cap structures known in the art (or to a wild-type, natural or physiological 5 '-cap structure).
  • recombinant Vaccinia Virus Capping Enzyme and recombinant 2'-0-methyltransferase enzyme can create a canonical 5 '-5 '- triphosphate linkage between the 5 '-terminal nucleotide of a polynucleotide and a guanosine cap nucleotide wherein the cap guanosine contains an N7-methylation and the 5 '-terminal nucleotide of the polynucleotide contains a 2'-0-methyl.
  • Capl structure Such a structure is termed the Capl structure.
  • cap results in a higher translational-competency, cellular stability, and a reduced activation of cellular pro-inflammatory cytokines, as compared, e.g., to other 5 ' cap analog structures known in the art.
  • Other exemplary cap structures include 7mG(5 ')ppp(5 ')N,pN2p (Cap 0), 7mG(5 ')ppp(5 ')NlmpNp (Cap 1), 7mG(5 ')-ppp(5')NlmpN2mp (Cap 2), and m(7)Gpppm(3)(6,6,2')Apm(2')Apm(2')Cpm(2)(3,2')Up (Cap 4).
  • 5 '-terminal caps may include endogenous caps or cap analogs.
  • a 5 '- terminal cap may include a guanosine analog.
  • Useful guanosine analogs include inosine, N1- methyl- guanosine, 2'-fluoro-guanosine, 7-deaza-guanosine, 8-oxo-guanosine, 2-amino- guanosine, LNA- guanosine, and 2-azido-guanosine.
  • a polynucleotide contains a modified 5 '-cap. A modification on the 5 '-cap may increase the stability of polynucleotide, increase the half-life of the polynucleotide, and could increase the polynucleotide translational efficiency.
  • the modified 5 '-cap may include, but is not limited to, one or more of the following modifications: modification at the 2'- and/or 3 '-position of a capped guanosine triphosphate (GTP), a replacement of the sugar ring oxygen (that produced the carbocyclic ring) with a methylene moiety (CH2), a modification at the triphosphate bridge moiety of the cap structure, or a modification at the nucleobase (G) moiety.
  • GTP capped guanosine triphosphate
  • CH2 methylene moiety
  • a 5'-UTR may be provided as a flanking region to the mRNA.
  • a 5’ -UTR may be homologous or heterologous to the coding region found in a polynucleotide.
  • flanking region Multiple 5 '-UTRs may be included in the flanking region and may be the same or of different sequences. Any portion of the flanking regions, including none, may be codon optimized and any may independently contain one or more different structural or chemical alterations, before and/or after codon optimization.
  • an ORF encoding an antigen of the disclosure is codon optimized. Codon optimization methods are known in the art. For example, an ORF of any one or more of the sequences provided herein may be codon optimized.
  • Codon optimization may be used to match codon frequencies in target and host organisms to ensure proper folding; bias GC content to increase mRNA stability or reduce secondary structures; minimize tandem repeat codons or base runs that may impair gene construction or expression; customize transcriptional and translational control regions; insert or remove protein trafficking sequences; remove/add post translation modification sites in encoded protein (e.g., glycosylation sites); add, remove or shuffle protein domains; insert or delete restriction sites; modify ribosome binding sites and mRNA degradation sites; adjust translational rates to allow the various domains of the protein to fold properly; or reduce or eliminate problem secondary structures within the polynucleotide.
  • encoded protein e.g., glycosylation sites
  • add, remove or shuffle protein domains add or delete restriction sites
  • modify ribosome binding sites and mRNA degradation sites adjust translational rates to allow the various domains of the protein to fold properly; or reduce or eliminate problem secondary structures within the polynucleotide.
  • Codon optimization tools, algorithms and services are known in the art—non-limiting examples include services from GeneArt (Life Technologies), DNA2.0 (Menlo Park Calif.) and/or proprietary methods.
  • the open reading frame (ORF) sequence is optimized using optimization algorithms.
  • 5 '-UTRs which are heterologous to the coding region of an mRNA may be engineered.
  • the mRNA may then be administered to cells, tissue or organisms and outcomes such as protein level, localization, and/or half-life may be measured to evaluate the beneficial effects the heterologous 5 ' -UTR may have on the mRNA.
  • mRNAs may include a stem loop such as, but not limited to, a histone stem loop.
  • the stem loop may be a nucleotide sequence that is about 25 or about 26 nucleotides in length.
  • the histone stem loop may be located 3 '-relative to the coding region (e.g., at the 3 '-terminus of the coding region).
  • the stem loop may be located at the 3 '-end of a polynucleotide described herein.
  • an mRNA includes more than one stem loop (e.g., two stem loops).
  • a stem loop may be located in a second terminal region of a polynucleotide.
  • the stem loop may be located within an untranslated region (e.g., 3'-UTR) in a second terminal region.
  • a mRNA which includes the histone stem loop may be stabilized by the addition of a 3 '-stabilizing region (e.g., a 3'- stabilizing region including at least one chain terminating nucleoside).
  • the addition of at least one chain terminating nucleoside may slow the degradation of a polynucleotide and thus can increase the half-life of the polynucleotide.
  • a mRNA, which includes the histone stem loop may be stabilized by an alteration to the 3 '-region of the polynucleotide that can prevent and/or inhibit the addition of oligio(U).
  • a mRNA, which includes the histone stem loop may be stabilized by the addition of an oligonucleotide that terminates in a 3 '-deoxynucleoside, 2',3 '-dideoxynucleoside 3 '-0- methylnucleosides, 3 -0- ethylnucleosides, 3 '-arabinosides, and other alternative nucleosides known in the art and/or described herein.
  • the mRNA of the present disclosure may include a histone stem loop, a poly-A region, and/or a 5 '-cap structure. The histone stem loop may be before and/or after the poly-A region.
  • the polynucleotides including the histone stem loop and a poly-A region sequence may include a chain terminating nucleoside described herein.
  • the polynucleotides of the present disclosure may include a histone stem loop and a 5 '-cap structure.
  • the 5 '-cap structure may include, but is not limited to, those described herein and/or known in the art.
  • the conserved stem loop region may include a miR sequence described herein.
  • the stem loop region may include the seed sequence of a miR sequence described herein.
  • the stem loop region may include a miR- 122 seed sequence.
  • mRNA may include at least one histone stem-loop and a poly-A region or polyadenylation signal.
  • the polynucleotide encoding for a histone stem loop and a poly-A region or a polyadenylation signal may code for a pathogen antigen or fragment thereof.
  • the polynucleotide encoding for a histone stem loop and a poly-A region or a polyadenylation signal may code for a therapeutic protein.
  • the polynucleotide encoding for a histone stem loop and a poly-A region or a polyadenylation signal may code for a tumor antigen or fragment thereof.
  • the polynucleotide encoding for a histone stem loop and a poly-A region or a polyadenylation signal may code for an allergenic antigen or an autoimmune self-antigen.
  • An mRNA may include a polyA sequence and/or polyadenylation signal.
  • a polyA sequence may be comprised entirely or mostly of adenine nucleotides or analogs or derivatives thereof.
  • a polyA sequence may be a tail located adjacent to a 3' untranslated region of a nucleic acid.
  • a long chain of adenosine nucleotides is normally added to messenger RNA (mRNA) molecules to increase the stability of the molecule.
  • poly-A polymerase adds a chain of adenosine nucleotides to the RNA.
  • the process called polyadenylation, adds a poly-A region that is between 100 and 250 residues long.
  • Unique poly- A region lengths may provide certain advantages to the alternative polynucleotides of the present disclosure.
  • the length of a poly-A region of the present disclosure is at least 30 nucleotides in length.
  • the poly-A region is at least 35 nucleotides in length.
  • the length is at least 40 nucleotides.
  • the length is at least 45 nucleotides. In another embodiment, the length is at least 55 nucleotides. In another embodiment, the length is at least 60 nucleotides. In another embodiment, the length is at least 70 nucleotides. In another embodiment, the length is at least 80 nucleotides. In another embodiment, the length is at least 90 nucleotides. In another embodiment, the length is at least 100 nucleotides. In another embodiment, the length is at least 120 nucleotides. In another embodiment, the length is at least 140 nucleotides. In another embodiment, the length is at least 160 nucleotides. In another embodiment, the length is at least 180 nucleotides. In another embodiment, the length is at least 200 nucleotides.
  • the length is at least 250 nucleotides. In another embodiment, the length is at least 300 nucleotides. In another embodiment, the length is at least 350 nucleotides. In another embodiment, the length is at least 400 nucleotides. In another embodiment, the length is at least 450 nucleotides. In another embodiment, the length is at least 500 nucleotides. In another embodiment, the length is at least 600 nucleotides. In another embodiment, the length is at least 700 nucleotides. In another embodiment, the length is at least 800 nucleotides. In another embodiment, the length is at least 900 nucleotides. In another embodiment, the length is at least 1000 nucleotides.
  • the length is at least 1100 nucleotides. In another embodiment, the length is at least 1200 nucleotides. In another embodiment, the length is at least 1300 nucleotides. In another embodiment, the length is at least 1400 nucleotides. In another embodiment, the length is at least 1500 nucleotides. In another embodiment, the length is at least 1600 nucleotides. In another embodiment, the length is at least 1700 nucleotides. In another embodiment, the length is at least 1800 nucleotides. In another embodiment, the length is at least 1900 nucleotides. In another embodiment, the length is at least 2000 nucleotides. In another embodiment, the length is at least 2500 nucleotides.
  • the length is at least 3000 nucleotides.
  • the poly-A region may be 80 nucleotides, 120 nucleotides, 160 nucleotides in length on an alternative polynucleotide molecule described herein. In other instances, the poly-A region may be 20, 40, 80, 100, 120, 140 or 160 nucleotides in length on an alternative polynucleotide molecule described herein. In some cases, the poly-A region is designed relative to the length of the overall alternative polynucleotide.
  • This design may be based on the length of the coding region of the alternative polynucleotide, the length of a particular feature or region of the alternative polynucleotide (such as mRNA) or based on the length of the ultimate product expressed from the alternative polynucleotide.
  • the poly-A region may be 10, 20, 30, 40, 50, 60, 70, 80, 90 or 100% greater in length than the additional feature.
  • the poly-A region may also be designed as a fraction of the alternative polynucleotide to which it belongs.
  • the poly-A region may be 10, 20, 30, 40, 50, 60, 70, 80, or 90% or more of the total length of the construct or the total length of the construct minus the poly-A region.
  • engineered binding sites and/or the conjugation of mRNA for poly-A binding protein may be used to enhance expression.
  • the engineered binding sites may be sensor sequences which can operate as binding sites for ligands of the local microenvironment of the mRNA.
  • the mRNA may include at least one engineered binding site to alter the binding affinity of poly-A binding protein (PABP) and analogs thereof. The incorporation of at least one engineered binding site may increase the binding affinity of the PABP and analogs thereof.
  • PABP poly-A binding protein
  • multiple distinct mRNA may be linked together to the PABP (poly-A binding protein) through the 3'-end using alternative nucleotides at the 3'- terminus of the poly-A region.
  • Transfection experiments can be conducted in relevant cell lines at and protein production can be assayed by ELISA at 12 hours, 24 hours, 48 hours, 72 hours, and day 7 post-transfection.
  • the transfection experiments may be used to evaluate the effect on PABP or analogs thereof binding affinity as a result of the addition of at least one engineered binding site.
  • a poly-A region may be used to modulate translation initiation.
  • an mRNA may include a polyA-G quartet.
  • the G- quartet is a cyclic hydrogen bonded array of four guanosine nucleotides that can be formed by G-rich sequences in both DNA and RNA.
  • the G-quartet is incorporated at the end of the poly-A region. The resultant mRNA may be assayed for stability, protein production and other parameters including half-life at various time points.
  • mRNA may include a poly-A region and may be stabilized by the addition of a 3 '-stabilizing region.
  • the mRNA with a poly-A region may further include a 5 '-cap structure.
  • mRNA may include a poly- A-G quartet.
  • the mRNA with a poly-A-G quartet may further include a 5 '-cap structure.
  • the 3 '-stabilizing region which may be used to stabilize mRNA includes a poly-A region or poly-A-G quartet.
  • the 3 '-stabilizing region which may be used with the present disclosure include a chain termination nucleoside such as 3 '-deoxyadenosine (cordycepin), 3 '-deoxyuridine, 3 '- deoxycytosine, 3 '-deoxyguanosine, 3 '-deoxy thymine, 2',3'- dideoxynucleosides, such as 2',3 '- dideoxyadenosine, 2',3 '-dideoxyuridine, 2',3 '- dideoxycytosine, 2', 3 '- dideoxyguanosine, 2',3 '-dideoxythymine, a 2'-deoxynucleoside, or an O-methylnucleoside.
  • a chain termination nucleoside such as 3 '-deoxyadenosine (cordycepin), 3 '-deoxyuridine, 3 '- deoxycytosine, 3 '-deoxygu
  • mRNA which includes a polyA region or a poly-A-G quartet may be stabilized by an alteration to the 3 '-region of the polynucleotide that can prevent and/or inhibit the addition of oligio(U).
  • mRNA which includes a poly-A region or a poly-A-G quartet may be stabilized by the addition of an oligonucleotide that terminates in a 3 '-deoxynucleoside, 2',3 '-dideoxynucleoside 3 -O- methylnucleosides, 3 '-O-ethylnucleosides, 3 '-arabinosides, and other alternative nucleosides known in the art and/or described herein.
  • the mRNA vaccines of the disclosure comprise lipids.
  • the lipids and modRNA can together form nanoparticles.
  • the lipids can encapsulate the mRNA in the form of a lipid nanoparticle (LNP) to aid cell entry and stability of the RNA/lipid nanoparticles.
  • LNP lipid nanoparticle
  • Lipid nanoparticles may include a lipid component and one or more additional components, such as a therapeutic and/or prophylactic.
  • a LNP may be designed for one or more specific applications or targets.
  • the elements of a LNP may be selected based on a particular application or target, and/or based on the efficacy, toxicity, expense, ease of use, availability, or other feature of one or more elements.
  • a LNP may be selected for a particular application or target according to, for example, the efficacy and toxicity of particular combinations of elements.
  • the efficacy and tolerability of a LNP formulation may be affected by the stability of the formulation.
  • Lipid nanoparticles may be designed for one or more specific applications or targets.
  • a LNP may be designed to deliver a therapeutic and/or prophylactic such as an RNA to a particular cell, tissue, organ, or system or group thereof in a mammal's body.
  • the LNP delivery system may have adjuvant effects which enhance the immunogenicity of an encoded antigen and/or other antigens in the composition.
  • Physiochemical properties of lipid nanoparticles may be altered to increase selectivity for particular bodily targets.
  • a LNP may include an mRNA encoding a polypeptide of interest capable of being translated within a cell to produce the polypeptide of interest.
  • a composition may be designed to be specifically delivered to a particular organ.
  • a composition may be designed to be specifically delivered to a mammalian liver. In some embodiments, a composition may be designed to be specifically delivered to a lymph node. In some embodiments, a composition may be designed to be specifically delivered to a mammalian spleen.
  • a LNP may include one or more components described herein. In some embodiments, the LNP formulation of the disclosure includes at least one lipid nanoparticle component. Lipid nanoparticles may include a lipid component and one or more additional components, such as a therapeutic and/or prophylactic, such as a nucleic acid. A LNP may be designed for one or more specific applications or targets.
  • the elements of a LNP may be selected based on a particular application or target, and/or based on the efficacy, toxicity, expense, ease of use, availability, or other feature of one or more elements.
  • the particular formulation of a LNP may be selected for a particular application or target according to, for example, the efficacy and toxicity of particular combination of elements.
  • the efficacy and tolerability of a LNP formulation may be affected by the stability of the formulation.
  • a polymer may be included in and/or used to encapsulate or partially encapsulate a LNP.
  • a polymer may be biodegradable and/or biocompatible.
  • a polymer may be selected from, but is not limited to, polyamines, polyethers, polyamides, polyesters, poly carbamates, polyureas, polycarbonates, polystyrenes, polyimides, polysulfones, polyurethanes, polyacetylenes, polyethylenes, polyethyleneimines, polyisocyanates, polyacrylates, polymethacrylates, polyacrylonitriles, and polyarylates.
  • a polymer may include poly(caprolactone) (PCL), ethylene vinyl acetate polymer (EVA), poly(lactic acid) (PLA), poly(L-lactic acid) (PLLA), poly(gly colic acid) (PGA), poly(lactic acid-co-gly colic acid) (PLGA), poly(L-lactic acid-co-gly colic acid) (PLLGA), poly(D,L-lactide) (PDLA), poly(L- lactide) (PLLA), poly(D,L-lactide-co-caprolactone), poly(D,L-lactide-co- caprolactone-co- glycolide), poly(D,L-lactide-co-PEO-co-D,L-lactide), poly(D,L-lactide-co-PPO- co-D,L-lactide), polyalkyl cyanoacrylate, polyurethane, poly-L-lysine (PLL), hydroxypropyl methacrylate (HPMA),
  • the amount of polymer-lipid in the lipid composition of a pharmaceutical composition disclosed herein ranges from about 0.1 mol % to about 5 mol %, from about 0.5 mol % to about 5 mol %, from about 1 mol % to about 5 mol %, from about 1.5 mol % to about 5 mol %, from about 2 mol % to about 5 mol %, from about 0.1 mol % to about 4 mol %, from about 0.5 mol % to about 4 mol %, from about 1 mol % to about 4 mol %, from about 1.5 mol % to about 4 mol %, from about 2 mol % to about 4 mol %, from about 0.1 mol % to about 3 mol %, from about 0.5 mol % to about 3 mol %, from about 1 mol % to about 3 mol %, from about 1.5 mol % to about 3 mol %, from about 2 mol % to about 3 mol %, from
  • the amount of polymer-lipid in the lipid composition disclosed herein is about 2 mol %. In some embodiments, the amount of polymer-lipid in the lipid composition disclosed herein is about 1.5 mol %. In some embodiments, the amount of polymer-lipid in the lipid composition disclosed herein is at least about 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2, 2.1, 2.2, 2.3, 2.4, 2.5, 2.6, 2.7, 2.8, 2.9, 3, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 3.9, 4, 4.1, 4.2, 4.3, 4.4, 4.5, 4.6, 4.7, 4.8, 4.9, or 5 mol %.
  • the lipid composition of the pharmaceutical compositions disclosed herein does not comprise a PEG-lipid.
  • Surface altering agents may include, but are not limited to, anionic proteins (e.g., bovine serum albumin), surfactants (e.g., cationic surfactants such as dimethyldioctadecyl- ammonium bromide), sugars or sugar derivatives (e.g., cyclodextrin), nucleic acids, polymers (e.g., heparin, polyethylene glycol, and poloxamer), mucolytic agents (e.g., acetylcysteine, mugwort, bromelain, papain, clerodendrum, bromhexine, carbocisteine, eprazinone, mesna, ambroxol, sobrerol, domiodol, letosteine, stepronin, tiopronin, gelsolin, thymosin ⁇ 4, dornase al
  • a surface altering agent may be disposed within a nanoparticle and/or on the surface of a LNP (e.g., by coating, adsorption, covalent linkage, or other process).
  • a LNP may also comprise one or more functionalized lipids.
  • a lipid may be functionalized with an alkyne group that, when exposed to an azide under appropriate reaction conditions, may undergo a cycloaddition reaction.
  • a lipid bilayer may be functionalized in this fashion with one or more groups useful in facilitating membrane permeation, cellular recognition, or imaging.
  • the surface of a LNP may also be conjugated with one or more useful antibodies. Functional groups and conjugates useful in targeted cell delivery, imaging, and membrane permeation are well known in the art.
  • lipid nanoparticles may include any substance useful in pharmaceutical compositions.
  • the lipid nanoparticle may include one or more pharmaceutically acceptable excipients or accessory ingredients such as, but not limited to, one or more solvents, dispersion media, diluents, dispersion aids, suspension aids, surface active agents, buffering agents, preservatives, and other species.
  • Surface active agents and/or emulsifiers may include, but are not limited to, natural emulsifiers (e.g., acacia, alginic acid, sodium alginate, cholesterol, and lecithin), sorbitan fatty acid esters (e.g., polyoxy ethylene sorbitan monolaurate [TWEEN®20], polyoxy ethylene sorbitan [TWEEN® 60], polyoxy ethylene sorbitan monooleate [TWEEN®80], sorbitan monopalmitate [SPAN®40], sorbitan monostearate [SPAN®60], sorbitan tristearate [SPAN®65], glyceryl monooleate, sorbitan monooleate [SPAN®80]), polyoxyethylene esters (e.g., polyoxyethylene monostearate [MYRJ® 45], polyoxyethylene hydrogenated castor oil, polyethoxylated castor oil, polyoxymethylene stearate, and SOLUTOL®), suc
  • preservatives may include, but are not limited to, antioxidants, chelating agents, free radical scavengers, antimicrobial preservatives, antifungal preservatives, alcohol preservatives, acidic preservatives, and/or other preservatives.
  • antioxidants include, but are not limited to, alpha tocopherol, ascorbic acid, ascorbyl palmitate, butylated hydroxyanisole, butylated hydroxy toluene, monothioglycerol, potassium metabisulfite, propionic acid, propyl gallate, sodium ascorbate, sodium bisulfite, sodium metabisulfite, and/or sodium sulfite.
  • chelating agents include ethylenediaminetetraacetic acid (EDTA), citric acid monohydrate, disodium edetate, dipotassium edetate, edetic acid, fumaric acid, malic acid, phosphoric acid, sodium edetate, tartaric acid, and/or trisodium edetate.
  • EDTA ethylenediaminetetraacetic acid
  • citric acid monohydrate disodium edetate
  • dipotassium edetate dipotassium edetate
  • edetic acid fumaric acid, malic acid, phosphoric acid, sodium edetate, tartaric acid, and/or trisodium edetate.
  • antimicrobial preservatives include, but are not limited to, benzalkonium chloride, benzethonium chloride, benzyl alcohol, bronopol, cetrimide, cetylpyridinium chloride, chlorhexidine, chlorobutanol, chlorocresol, chloroxylenol, cresol, ethyl alcohol, glycerin, hexetidine, imidurea, phenol, phenoxyethanol, phenylethyl alcohol, phenylmercuric nitrate, propylene glycol, and/or thimerosal.
  • antifungal preservatives include, but are not limited to, butyl paraben, methyl paraben, ethyl paraben, propyl paraben, benzoic acid, hydroxybenzoic acid, potassium benzoate, potassium sorbate, sodium benzoate, sodium propionate, and/or sorbic acid.
  • alcohol preservatives include, but are not limited to, ethanol, polyethylene glycol, benzyl alcohol, phenol, phenolic compounds, bisphenol, chlorobutanol, hydroxybenzoate, and/or phenylethyl alcohol.
  • acidic preservatives include, but are not limited to, vitamin A, vitamin C, vitamin E, beta-carotene, citric acid, acetic acid, dehydroascorbic acid, ascorbic acid, sorbic acid, and/or phytic acid.
  • preservatives include, but are not limited to, tocopherol, tocopherol acetate, deteroxime mesylate, cetrimide, butylated hydroxyanisole (BHA), butylated hydroxy toluene (BHT), ethylenediamine, sodium lauryl sulfate (SLS), sodium lauryl ether sulfate (SLES), sodium bisulfite, sodium metabisulfite, potassium sulfite, potassium metabisulfite, GLYDANT PLUS®, PHENONIP®, methylparaben, GERMALL® 115, GERMABEN®II, NEOLONETM, KATHONTM, and/or EUXYL®.
  • An exemplary free radical scavenger includes butylated hydroxytoluene (BHT or butylhydroxytoluene) or deferoxamine.
  • buffering agents include, but are not limited to, citrate buffer solutions, acetate buffer solutions, phosphate buffer solutions, ammonium chloride, calcium carbonate, calcium chloride, calcium citrate, calcium glubionate, calcium gluceptate, calcium gluconate, d- gluconic acid, calcium glycerophosphate, calcium lactate, calcium lactobionate, propanoic acid, calcium levulinate, pentanoic acid, dibasic calcium phosphate, phosphoric acid, tribasic calcium phosphate, calcium hydroxide phosphate, potassium acetate, potassium chloride, potassium gluconate, potassium mixtures, dibasic potassium phosphate, monobasic potassium phosphate, potassium phosphate mixtures, sodium acetate, sodium bicarbonate, sodium chloride, sodium citrate, sodium lactate, dibasic sodium
  • the formulation including a LNP may further include a salt, such as a chloride salt.
  • the formulation including a LNP may further includes a sugar such as a disaccharide.
  • the formulation further includes a sugar but not a salt, such as a chloride salt.
  • a LNP may further include one or more small hydrophobic molecules such as a vitamin (e.g., vitamin A or vitamin E) or a sterol.
  • Carbohydrates may include simple sugars (e.g., glucose) and polysaccharides (e.g., glycogen and derivatives and analogs thereof). The characteristics of a LNP may depend on the components thereof.
  • a LNP including cholesterol as a structural lipid may have different characteristics than a LNP that includes a different structural lipid.
  • structural lipid refers to sterols and also to lipids containing sterol moieties.
  • sterols are a subgroup of steroids consisting of steroid alcohols.
  • the structural lipid is a steroid.
  • the structural lipid is cholesterol.
  • the structural lipid is an analog of cholesterol.
  • the structural lipid is alpha-tocopherol.
  • the lipid nanoparticle compositions may include one or more structural lipids.
  • Structural lipids can be selected from the group including but not limited to, cholesterol, fecosterol, sitosterol, ⁇ -sitosterol, ergosterol, campesterol, stigmasterol, brassicasterol, tomatidine, tomatine, ursolic acid, alpha-tocopherol, hopanoids, phytosterols, steroids, and mixtures thereof.
  • the structural lipid is a sterol.
  • “sterols” are a subgroup of steroids consisting of steroid alcohols.
  • the structural lipid is a steroid.
  • the structural lipid is cholesterol. In certain embodiments, the structural lipid is an analog of cholesterol. In some embodiments, the structural lipid is alpha-tocopherol. In some preferred embodiments, the the comprses stostano. In some embodiments, the structural lipid is a sitosterol, a stigmasterol, a campesterol, a sitostanol, a campestanol, a brassicasterol, a fucosterol, beta-sitosterol, stigmastanol, beta- sitostanol, ergosterol, lupeol, cycloartenol, ⁇ 5-avenaserol, ⁇ 7-avenaserol or a ⁇ 7-stigmasterol, including analogs, salts or esters thereof, alone or in combination.
  • the sterol component of a LNP of the disclosure is a single phytosterol.
  • the phytosterol component of a LNP of the disclosure is a mixture of different phytosterols (e.g.2, 3, 4, 5 or 6 different phytosterols).
  • the phytosterol component of an LNP of the disclosure is a blend of one or more phytosterols and one or more zoosterols, such as a blend of a phytosterol (e.g., a sitosterol, such as beta-sitosterol) and cholesterol.
  • the phytosterol is ⁇ -sitosterol, campesterol, sigmastanol, or any combination thereof.
  • the phytosterol is ⁇ -sitosterol.
  • the one or more structural lipids comprises a mixture of ⁇ -sitosterol, campesterol, and stigmasterol.
  • the one or more structural lipids comprises a mixture of ⁇ -sitosterol and cholesterol.
  • the structural lipid is selected from selected from ⁇ -sitosterol and cholesterol.
  • the structural lipid is ⁇ -sitosterol.
  • the structural lipid is cholesterol.
  • the one or more structural lipids comprises about 35% to about 85% of ⁇ -sitosterol, about 5% to about 35% stigmasterol, and about 5% to about 35% of campesterol.
  • the one or more structural lipids comprises about 40% to about 80% of ⁇ -sitosterol, about 10% to about 30% stigmasterol, and about 10% to about 30% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 70% of ⁇ -sitosterol, about 10% to about 25% stigmasterol, and about 10% to about 25% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 70% of ⁇ -sitosterol, about 15% to about 25% stigmasterol, and about 15% to about 25% of campesterol.
  • the one or more structural lipids comprises about 35% to about 45% of ⁇ -sitosterol, about 20% to about 30% stigmasterol, and about 20% to about 30% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 50% of ⁇ -sitosterol, about 25% to about 35% stigmasterol, and about 25% to about 35% of campesterol. In some embodiments, the one or more structural lipids comprises about 65% to about 75% of ⁇ -sitosterol, about 5% to about 15% stigmasterol, and about 5% to about 15% of campesterol.
  • the one or more structural lipids comprises about 35% to about 85% of ⁇ -sitosterol, about 5% to about 35% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 80% of ⁇ -sitosterol, about 10% to about 30% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 70% of ⁇ -sitosterol, about 10% to about 25% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 70% of ⁇ - sitosterol, about 15% to about 25% stigmasterol, and 0% of campesterol.
  • the one or more structural lipids comprises about 35% to about 45% of ⁇ - sitosterol, about 20% to about 30% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 50% of ⁇ - sitosterol, about 25% to about 35% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 65% to about 75% of ⁇ - sitosterol, about 5% to about 15% stigmasterol, and 0% of campesterol. Accordingly, in some preferred embodiments, the composition does not comprise campesterol.
  • the composition comprises one or more structural lipids comprises about 10% to about 30% of cholesterol, about 10% to about 30% ⁇ -sitosterol, and about 10% to about 30% stigmasterol, and 0% campesterol. See, for example, Table 49.
  • the composition further comprises about 30-50% cationic lipid and about 5- 25% phospholipid.
  • the mol % of the one or more structural lipids is between about 1% and 50% of the mol % of the compound having the structure of any of the foregoing compounds present in the lipid nanoparticle.
  • the mol % of the one or more structural lipids is between about 10% and 40% of the mol % of the compound having the structure of any of the foregoing compounds present in the lipid nanoparticle. In some embodiments, the mol % of the one or more structural lipids is between about 20% and 30% of the mol % of the compound having the structure of any of the foregoing compounds present in the lipid nanoparticle. In some embodiments, the mol % of the one or more structural lipids is about 30% of the mol % of the compound having the structure of any of the foregoing compounds present in the lipid nanoparticle. In some embodiments, the lipid nanoparticle compositions described herein can comprise about 20 mol% to about 60 mol% structural lipid.
  • the lipid nanoparticle compositions comprise about 30 mol% to about 50 mol% of structural lipid. In some embodiments, the lipid nanoparticle compositions comprise about 35 mol% to about 45 mol% of structural lipid. In some embodiments, the lipid nanoparticle compositions comprise about 37 mol% to about 42 mol% of structural lipid. In some embodiments, the lipid nanoparticle compositions comprise about 35, about 36, about 37, about 38, about 39, or about 40 mol% of structural lipid. In some embodiments, the nanoparticle comprises about 39 to about 40 mol% structural lipid. In some embodiments, a LNP of the invention comprises an N:P ratio of from about 2:1 to about 30:1.
  • a LNP of the invention comprises an N:P ratio of about 6:1. In some embodiments, a LNP of the invention comprises an N:P ratio of about 3:1, 4:1, or 5:1.
  • the characteristics of a LNP may depend on the absolute or relative amounts of its components. For instance, a LNP including a higher molar fraction of a phospholipid may have different characteristics than a LNP including a lower molar fraction of a phospholipid. Characteristics may also vary depending on the method and conditions of preparation of the lipid nanoparticle. In general, phospholipids comprise a phospholipid moiety and one or more fatty acid moieties.
  • a phospholipid moiety can be selected, for example, from the non-limiting group consisting of phosphatidyl choline, phosphatidyl ethanolamine, phosphatidyl glycerol, phosphatidyl serine, phosphatidic acid, 2-lysophosphatidyl choline, and a sphingomyelin.
  • a fatty acid moiety can be selected, for example, from the non-limiting group consisting of lauric acid, myristic acid, myristoleic acid, palmitic acid, palmitoleic acid, stearic acid, oleic acid, linoleic acid, alpha-linolenic acid, erucic acid, phytanoic acid, arachidic acid, arachidonic acid, eicosapentaenoic acid, behenic acid, docosapentaenoic acid, and docosahexaenoic acid.
  • Particular phospholipids can facilitate fusion to a membrane.
  • a cationic phospholipid can interact with one or more negatively charged phospholipids of a membrane (e.g., a cellular or intracellular membrane). Fusion of a phospholipid to a membrane can allow one or more elements (e.g., a therapeutic agent) of a lipid-containing composition (e.g., LNPs) to pass through the membrane permitting, e.g., delivery of the one or more elements to a target tissue.
  • a membrane e.g., a cellular or intracellular membrane.
  • elements e.g., a therapeutic agent
  • a lipid-containing composition e.g., LNPs
  • Non-natural phospholipid species including natural species with modifications and substitutions including branching, oxidation, cyclization, and alkynes are also contemplated.
  • a phospholipid can be functionalized with or cross-linked to one or more alkynes (e.g., an alkenyl group in which one or more double bonds is replaced with a triple bond).
  • alkynes e.g., an alkenyl group in which one or more double bonds is replaced with a triple bond.
  • an alkyne group can undergo a copper-catalyzed cycloaddition upon exposure to an azide.
  • Such reactions can be useful in functionalizing a lipid bilayer of a nanoparticle composition to facilitate membrane permeation or cellular recognition or in conjugating a nanoparticle composition to a useful component such as a targeting or imaging moiety (e.g., a dye).
  • Phospholipids include, but are not limited to, glycerophospholipids such as phosphatidylcholines, phosphatidyl-ethanolamines, phosphatidylserines, phosphatidylinositols, phosphatidy glycerols, and phosphatidic acids. Phospholipids also include phosphosphingolipid, such as sphingomyelin. In some embodiments, a phospholipid useful or potentially useful in the present invention is an analog or variant of DSPC. Lipid nanoparticles may be characterized by a variety of methods.
  • microscopy e.g., transmission electron microscopy or scanning electron microscopy
  • Dynamic light scattering or potentiometry e.g., potentiometric titrations
  • Dynamic light scattering may also be utilized to determine particle sizes.
  • Instruments such as the Zetasizer Nano ZS (Malvern Instruments Ltd, Malvern, Worcestershire, UK) may also be used to measure multiple characteristics of a LNP, such as particle size, polydispersity index, and zeta potential.
  • the mean size of a LNP may be between 10s of nm and 100s of nm, e.g., measured by dynamic light scattering (DLS).
  • the mean size may be from about 40 nm to about 150 nm, such as about 40 nm, 45 nm, 50 nm, 55 nm, 60 nm, 65 nm, 70 nm, 75 nm, 80 nm, 85 nm, 90 nm, 95 nm, 100 nm, 105 nm, 110 nm, 115 nm, 120 nm, 125 nm, 130 nm, 135 nm, 140 nm, 145 nm, or 150 nm.
  • the mean size of a LNP may be from about 50 nm to about 100 nm, from about 50 nm to about 90 nm, from about 50 nm to about 80 nm, from about 50 nm to about 70 nm, from about 50 nm to about 60 nm, from about 60 nm to about 100 nm, from about 60 nm to about 90 nm, from about 60 nm to about 80 nm, from about 60 nm to about 70 nm, from about 70 nm to about 100 nm, from about 70 nm to about 90 nm, from about 70 nm to about 80 nm, from about 80 nm to about 100 nm, from about 80 nm to about 90 nm, or from about 90 nm to about 100 nm.
  • the mean size of a LNP may be from about 70 nm to about 100 nm. In a particular embodiment, the mean size may be about 80 nm. In other embodiments, the mean size may be about 100 nm.
  • a LNP may be relatively homogenous.
  • a polydispersity index may be used to indicate the homogeneity of a LNP, e.g., the particle size distribution of the lipid nanoparticles. A small (e.g., less than 0.3) polydispersity index generally indicates a narrow particle size distribution.
  • a LNP may have a polydispersity index from about 0 to about 0.25, such as 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24, or 0.25.
  • the polydispersity index of a LNP may be from about 0.10 to about 0.20.
  • the zeta potential of a LNP may be used to indicate the electrokinetic potential of the composition. For example, the zeta potential may describe the surface charge of a LNP.
  • the zeta potential of a LNP may be from about -10 mV to about +20 mV, from about -10 mV to about +15 mV, from about -10 mV to about +10 mV, from about - 10 mV to about +5 mV, from about -10 mV to about 0 mV, from about -10 mV to about - 5 mV, from about -5 mV to about +20 mV, from about -5 mV to about +15 mV, from about -5 mV to about +10 mV, from about -5 mV to about +5 mV, from about -5 mV to about 0 mV, from about 0 mV to about +20 mV, from about 0 mV to about +15 mV to about 0 mV, from about 0 mV to about +20 mV, from about 0 mV to about +15 a LNP
  • the efficiency of encapsulation of a therapeutic and/or prophylactic describes the amount of therapeutic and/or prophylactic that is encapsulated or otherwise associated with a LNP after preparation, relative to the initial amount provided.
  • the encapsulation efficiency is desirably high (e.g., close to 100%).
  • the encapsulation efficiency may be measured, for example, by comparing the amount of therapeutic and/or prophylactic in a solution containing the lipid nanoparticle before and after breaking up the lipid nanoparticle with one or more organic solvents or detergents. Fluorescence may be used to measure the amount of free therapeutic and/or prophylactic (e.g., RNA) in a solution.
  • the encapsulation efficiency may be given as 97%.
  • the encapsulation efficiency of a therapeutic and/or prophylactic may be at least 50%, for example 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%.
  • the encapsulation efficiency may be at least 80%.
  • the encapsulation efficiency may be at least 90%.
  • a LNP may optionally comprise one or more coatings.
  • a LNP may be formulated in a capsule, film, or tablet having a coating.
  • a capsule, film, or tablet including a composition described herein may have any useful size, tensile strength, hardness, or density.
  • Formulations comprising amphiphilic polymers and lipid nanoparticles may be formulated in whole or in part as pharmaceutical compositions.
  • Pharmaceutical compositions may include one or more amphiphilic polymers and one or more lipid nanoparticles.
  • a pharmaceutical composition may include one or more amphiphilic polymers and one or more lipid nanoparticles including one or more different therapeutics and/or prophylactics.
  • Pharmaceutical compositions may further include one or more pharmaceutically acceptable excipients or accessory ingredients such as those described herein.
  • compositions and agents are available, for example, in Remington's The Science and Practice of Pharmacy, 21st Edition, A. R. Gennaro; Lippincott, Williams & Wilkins, Baltimore, MD, 2006.
  • Conventional excipients and accessory ingredients may be used in any pharmaceutical composition, except insofar as any conventional excipient or accessory ingredient may be incompatible with one or more components of a LNP or the one or more amphiphilic polymers in the formulation of the disclosure.
  • An excipient or accessory ingredient may be incompatible with a component of a LNP or the amphiphilic polymer of the formulation if its combination with the component or amphiphilic polymer may result in any undesirable biological effect or otherwise deleterious effect.
  • one or more excipients or accessory ingredients may make up greater than 50% of the total mass or volume of a pharmaceutical composition including a LNP.
  • the one or more excipients or accessory ingredients may make up 50%, 60%, 70%, 80%, 90%, or more of a pharmaceutical convention.
  • a pharmaceutically acceptable excipient is at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% pure.
  • an excipient is approved for use in humans and for veterinary use.
  • an excipient is approved by United States Food and Drug Administration.
  • an excipient is pharmaceutical grade.
  • an excipient meets the standards of the United States Pharmacopoeia (USP), the European Pharmacopoeia (EP), the British Pharmacopoeia, and/or the International Pharmacopoeia.
  • Relative amounts of the one or more amphiphilic polymers, the one or more lipid nanoparticles, the one or more pharmaceutically acceptable excipients, and/or any additional ingredients in a pharmaceutical composition in accordance with the present disclosure will vary, depending upon the identity, size, and/or condition of the subject treated and further depending upon the route by which the composition is to be administered.
  • a pharmaceutical composition may comprise between 0.1% and 100% (wt/wt) of one or more lipid nanoparticles.
  • a pharmaceutical composition may comprise between 0.1% and 15% (wt/vol) of one or more amphiphilic polymers (e.g., 0.5%, 1%, 2.5%, 5%, 10%, or 12.5% w/v).
  • the lipid nanoparticles and/or pharmaceutical compositions of the disclosure are refrigerated or frozen for storage and/or shipment (e.g., being stored at a temperature of 4 °C or lower, such as a temperature between about -150 °C and about 0 °C or between about -80 °C and about -20 °C (e.g., about -5 °C, -10 °C, -15 °C, -20 °C, -25 °C, -30 °C, -40 °C, -50 °C, -60 °C, -70 °C, -80 °C, -90 °C, -130 °C or -150 °C).
  • the pharmaceutical composition comprising one or more amphiphilic polymers and one or more lipid nanoparticles is a solution or solid (e.g., via lyophilization) that is refrigerated for storage and/or shipment at, for example, about -20 °C, -30 °C, -40 °C, -50 °C, -60 °C, -70 °C, or -80 °C.
  • the disclosure also relates to a method of increasing stability of the lipid nanoparticles by adding an effective amount of an amphiphilic polymer and by storing the lipid nanoparticles and/or pharmaceutical compositions thereof at a temperature of 4 °C or lower, such as a temperature between about -150 °C and about 0 °C or between about -80 °C and about -20 °C, e.g., about -5 °C, -10 °C, -15 °C, -20 °C, -25 °C, -30 °C, -40 °C, -50 °C, -60 °C, - 70 °C, -80 °C, -90 °C, -130 °C or -150 °C).
  • a temperature of 4 °C or lower such as a temperature between about -150 °C and about 0 °C or between about -80 °C and about -20 °C, e.g., about -5
  • RNA integrity is a measure of RNA quality that quantitates intact RNA.
  • the method is also capable of detecting potential degradation products. RNA integrity is preferably determined by capillary gel electrophoresis. The initial specification is set to ensure sufficient RNA integrity in drug product preparations.
  • the RNA polynucleotide has an integrity of at least about 80%,85%, 90%, 92%, 94%, 95%, 96%, 97%, 98%, or 99%. In some embodiments, the RNA polynucleotide has an integrity of or greater than about 95%. In some embodiments, the RNA polynucleotide has an integrity of or greater than about 98%. In some embodiments, the RNA polynucleotide has an integrity of or greater than about 99%. In preferred embodiments, the RNA polynucleotide has a clinical grade purity. In some embodiments, the purity of the RNA polynucleotide is between about 60% and about 100%.
  • the purity of the RNA polynucleotide is between about 80% and 99%. In some embodiments, the purity of the RNA polynucleotide is between about 90% and about 99%. In some embodiments, wherein the purified mRNA has a clinical grade purity without further purification. In some embodiments, the clinical grade purity is achieved through a method including tangential flow filtration (TFF) purification. In some embodiments, the clinical grade purity is achieved without the further purification selected from high performance liquid chromatography (HPLC) purification, ligand or binding based purification, and/or ion exchange chromatography.
  • HPLC high performance liquid chromatography
  • the method of producing the RNA polynucleotides removes long abortive RNA species, double-stranded RNA (dsRNA), residual plasmid DNA residual solvent and/or residual salt.
  • the short abortive transcript contaminants comprise less than 15 bases. In some embodiments, the short abortive transcript contaminants comprise about 8-12 bases.
  • the method of the invention also removes RNAse inhibitor.
  • the purified RNA polynucleotide comprises 5% or less, 4% or less, 3% or less, 2% or less, 1 % or less or is substantially free of protein contaminants as determined by capillary electrophoresis.
  • the purified RNA polynucleotide comprises less than 5%, less than 4%, less than 3%, less than 2%, less than 1 %, or is substantially free of salt contaminants determined by high performance liquid chromatography (HPLC). In some embodiments, the purified RNA polynucleotide comprises 5% or less, 4% or less, 3% or less, 2% or less, 1 % or less or is substantially free of short abortive transcript contaminants determined by known methods, such as, e.g., high performance liquid chromatography (HPLC).
  • HPLC high performance liquid chromatography
  • the purified RNA polynucleotide has integrity of 60% or greater, 70% or greater, 80% or greater, 81% or greater, 82% or greater, 83% or greater, 84% or greater, 85% or greater, 86% or greater, 87% or greater, 88% or greater, 89% or greater, 90% or greater, 95% or greater, 96% or greater, 97% or greater, 98% or greater, or 99% or greater as determined by a known method, such as, e.g., capillary electrophoresis.
  • Modified nucleobases which may be incorporated into modified nucleosides and nucleotides and be present in the RNA molecules include, for example, m5C (5- methylcytidine), m5U (5-methyluridine), m6A (N6-methyladenosine), s2U (2- thiouridine), Um (2'-0-methyluridine), mlA (1-methyladenosine); m2A (2- methyladenosine); Am (2-1-O-methyladenosine); ms2m6A (2- methylthio-N6- methyladenosine); i6A (N6-isopentenyladenosine); ms2i6A (2-methylthio- N6isopentenyladenosine); io6A (N6-(cis-hydroxyisopentenyl)adenosine); ms2io6A (2- methylthio-N6-(cis-hydroxyisopenten
  • modified nucleosides in the list may be excluded.
  • Additional exemplary modified nucleotides include any one of N-1-methylpseudouridine; pseudouridine, N6-methyladenosine, 5-methylcytidine, and 5-methyluridine.
  • the modified nucleotide is N-1-methylpseudouridine.
  • the RNA molecule may include phosphoramidate, phosphorothioate, and/or methylphosphonate linkages.
  • the RNA molecule includes a modified nucleotide selected from any one of pseudouridine, N1-methylpseudouridine, N1-ethylpseudouridine, 2-thiouridine, 4′- thiouridine, 5-methylcytosine, 5-methyluridine, 2-thio-1-methyl-1-deaza-pseudouridine, 2-thio-1- methyl-pseudouridine, 2-thio-5-aza-uridine, 2-thio-dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4-methoxy-2-thio-pseudouridine, 4-methoxy-pseudouridine, 4-thio-1- methyl-pseudouridine, 4-thio-pseudouridine, 5-aza-uridine, dihydropseudouridine, 5- methoxyuridine and 2′-O-methyl uridine.
  • pseudouridine N1-methyl
  • the modified or unnatural nucleotides are selected from the group consisting of pseudouridine, N1-methylpseudouridine, N1-ethylpseudouridine, 2-thiouridine, 4′-thiouridine, 5-methylcytosine, 5-methyluridine, 2-thio-1- methyl-1-deaza-pseudouridine, 2-thio-1-methyl-pseudouridine, 2-thio-5-aza-uridine, 2-thio- dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4-methoxy-2-thio- pseudouridine, 4-methoxy-pseudouridine, 4-thio-1-methyl-pseudouridine, 4-thio-pseudouridine, 5-aza-uridine, dihydropseudouridine, 5-methoxyuridine, and 2′-O-methyl uridine.
  • the modified or unnatural nucleotides are selected from the group consisting of 5- methyluridine, N1-methylpseudouridine, 5-methoxyuridine, and 5-methylcytosine. In some embodiments, at least 10% of a total population of a particular nucleotide in the saRNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 75% of a total population of a particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, essentially all of the particular nucleotide population in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least a portion, or all of a total population of a particular nucleotide in the saRNA molecule has been replaced with two modified or unnatural nucleotides.
  • the two modified or unnatural nucleotides are provided in a ratio equal to any one of, at least any one of, at most any one of, or between any two of 1:99 to 99:1, including 1:99; 2:98; 3:97; 4:96; 5:95; 6:94; 7:93; 8:92; 9:91; 10:90; 11:89; 12:88; 13:87; 14:86; 15:85; 16:84; 17:83; 18:82, 19:81; 20:80; 21:79; 22:78; 23:77; 24:76; 25:75; 26:74; 27:73; 28:72; 29:71; 30:70; 31:69; 32:68; 33:67; 34:66; 35:65; 36:64; 37:63; 38:62; 39:61; 40:60; 41:59; 42:58; 43:57; 44:56; 45:55; 46:54; 47:53; 48:52; 49:51; 50:50; 51:
  • At least 10% of a total population of a first particular nucleotide in a saRNA molecule as disclosed herein has been replaced with one or more modified or unnatural nucleotides, and at least 10% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • at least 10% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides
  • at least 25% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 10% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 50% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 10% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 10% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • at least 25% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides
  • at least 25% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 25% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 50% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 25% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • at least 50% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides
  • at least 50% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 50% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 75% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 75% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • essentially all of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides
  • essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides.
  • at least 25% of a total population of uridine nucleotides in the saRNA molecule has been replaced with N1-methylpseudouridine.
  • at least 50% of a total population of uridine nucleotides in the molecule has been replaced with N1- methylpseudouridine.
  • At least 75% of a total population of uridine nucleotides in the molecule has been replaced with N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with N1- methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5-methoxyuridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with 5-methoxyuridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5-methyluridine.
  • essentially all uridine nucleotides in the molecule have been replaced with 5-methyluridine. In some embodiments, at least 50% of a total population of cytosine nucleotides in the molecule has been replaced with 5-methylcytosine. In some embodiments, essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 2-thiouridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with 2-thiouridine.
  • At least 50% of a total population of uridine nucleotides in the molecule has been replaced with N1-methylpseudouridine and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5- methoxyuridine and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5-methyluridine and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine.
  • essentially all uridine nucleotides in the molecule have been replaced with about 50% 5-methoxyuridine and about 50% N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with about 75% 5-methoxyuridine and about 25% N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with about 25% 5- methoxyuridine and about 75% N1-methylpseudouridine.
  • UTRs The 5′ untranslated regions (UTR) is a regulatory region of DNA situated at the 5′ end of a protein coding sequence that is transcribed into mRNA but not translated into protein.5′ UTRs may contain various regulatory elements, e.g., 5′ cap structure, stem-loop structure, and an internal ribosome entry site (IRES), which may play a role in the control of translation initiation.
  • the 3′ UTR, situated downstream of a protein coding sequence, may be involved in regulatory processes including transcript cleavage, stability and polyadenylation, translation, and mRNA localization.
  • the UTR is derived from an mRNA that is naturally abundant in a specific tissue (e.g., lymphoid tissue), to which the mRNA expression is targeted.
  • the UTR increases protein synthesis.
  • the UTR may increase protein synthesis by increasing the time that the mRNA remains in translating polysomes (message stability) and/or the rate at which ribosomes initiate translation on the message (message translation efficiency).
  • the UTR sequence may prolong protein synthesis in a tissue-specific manner.
  • the 5′ UTR and the 3′ UTR sequences are computationally derived.
  • the 5′ UTR and the 3′ UTRs are derived from a naturally abundant mRNA in a tissue.
  • the tissue may be, for example, liver, a stem cell, or lymphoid tissue.
  • the lymphoid tissue may include, for example, any one of a lymphocyte (e.g., a B-lymphocyte, a helper T-lymphocyte, a cytotoxic T-lymphocyte, a regulatory T- lymphocyte, or a natural killer cell), a macrophage, a monocyte, a dendritic cell, a neutrophil, an eosinophil and a reticulocyte.
  • the 5′ UTR and the 3′ UTR are derived from an alphavirus.
  • the 5′ UTR and the 3′ UTR are from a wild-type alphavirus. Examples of alphaviruses are described below.
  • the first RNA molecule includes a 5′ UTR and the 3′ UTR derived from a naturally abundant mRNA in a tissue.
  • the first RNA molecule includes a 5′ UTR and the 3′ UTR derived from an alphavirus.
  • the second RNA or the saRNA molecule includes a 5′ UTR and the 3′ UTR derived from an alphavirus.
  • the second RNA or the saRNA molecule includes a 5′ UTR and the 3′ UTR from a wild-type alphavirus.
  • the RNA molecule includes a 5’ cap.
  • Open reading frame (ORF) The 5′ and 3′ UTRs may be operably linked to an ORF, which may be a sequence of codons that is capable of being translated into a polypeptide of interest.
  • the RNA molecule may include one (monocistronic), two (bicistronic) or more (multicistronic) open reading frames (ORFs).
  • the ORF encodes a non-structural viral gene.
  • the ORF further includes one or more subgenomic promoters.
  • the RNA molecule includes a subgenomic promoter operably linked to the ORF.
  • the subgenomic promoter comprises a cis-acting regulatory element.
  • the cis-acting regulatory element is immediately downstream (5’-3’) of B 2 .
  • the cis-acting regulatory element is immediately downstream (5’-3’) of a guanine that is immediately downstream of B 2 .
  • the cis-acting regulatory element is an AU-rich element.
  • the AU-rich element is au, auaaaagau, auaaaaagau, auag, auauauauau, auauauauauau, augaugaugau, augau, augau, auaaagaua, or auaaaagaug.
  • the second RNA or the saRNA molecule may include (i) an ORF encoding a replicase which may transcribe RNA from the second RNA or the saRNA molecule and (ii) an ORF encoding at least one an antigen or polypeptide of interest.
  • the polymerase may be an alphavirus replicase e.g., including any one of the non-structural alphavirus proteins nsP1, nsP2, nsP3 and nsP4, or a combination thereof.
  • the RNA molecule includes alphavirus nonstructural protein nsP1.
  • the RNA molecule includes alphavirus nonstructural protein nsP2.
  • the RNA molecule includes alphavirus nonstructural protein nsP3. In some embodiments, the RNA molecule includes alphavirus nonstructural protein nsP4. In some embodiments, the RNA molecule includes alphavirus nonstructural proteins nsP1, nsP2, and nsP3. In some embodiments, the RNA molecule includes alphavirus nonstructural proteins nsP1, nsP2, nsP3, and nsP4. In some embodiments, the RNA molecule includes any combination of nsP1, nsP2, nsP3, and nsP4. In some embodiments, the RNA molecule does not include nsP4.
  • an open reading frame of an RNA (e.g., saRNA) composition is codon-optimized.
  • the open reading frame which the influenza polypeptide or fragment thereof is encoded is codon-optimized.
  • 5’ cap In some embodiments, the saRNA molecule described herein includes a 5’ cap.
  • the 5'-cap moiety is a natural 5'-cap.
  • a “natural 5'-cap” is defined as a cap that includes 7-methylguanosine connected to the 5’ end of an mRNA molecule through a 5′ to 5′ triphosphate linkage. In some embodiments, the 5'-cap moiety is a 5'- cap analog.
  • the 5' end of the RNA is capped with a modified ribonucleotide with the structure m7G (5') ppp (5') N (cap 0 structure) or a derivative thereof, which may be incorporated during RNA synthesis (e.g., co-transcriptional capping) or may be enzymatically engineered after RNA transcription (e.g., post-transcriptional capping), wherein “N” is any ribonucleotide.
  • the 5’ end of the RNA molecule is capped with a modified ribonucleotide via an enzymatic reaction after RNA transcription.
  • capping is performed after purification, e.g., tangential flow filtration, of the RNA molecule.
  • An exemplary enzymatic reaction for capping may include use of Vaccinia Virus Capping Enzyme (VCE) that includes mRNA triphosphatase, guanylyl- transferase, and guanine-7- methytransferase, which catalyzes the construction of N7-monomethylated cap 0 structures.
  • VCE Vaccinia Virus Capping Enzyme
  • Cap 0 structure can help maintaining the stability and translational efficacy of the RNA molecule.
  • the 5' cap of the RNA molecule may be further modified by a 2 '-O-Methyltransferase which results in the generation of a cap 1 structure (m7Gppp [m2 '- ⁇ ] N), which may further increase translation efficacy.
  • the RNA molecule may be enzymatically capped at the 5′ end using Vaccinia guanylyltransferase, guanosine triphosphate, and S-adenosyl-L-methionine to yield cap 0 structure.
  • An inverted 7-methylguanosine cap is added via a 5′ to 5′ triphosphate bridge.
  • a 2′O-methyltransferase with Vaccinia guanylyltransferase yields the cap 1 structure where in addition to the cap 0 structure, the 2′OH group is methylated on the penultimate nucleotide.
  • S-adenosyl-L-methionine (SAM) is a cofactor utilized as a methyl transfer reagent.
  • Non-limiting examples of 5′ cap structures are those which, among other things, have enhanced binding of cap binding polypeptides, increased half-life, reduced susceptibility to 5′ endonucleases and/or reduced 5′ decapping, as compared to synthetic 5′cap structures known in the art (or to a wild-type, natural or physiological 5′cap structure).
  • recombinant Vaccinia Virus Capping Enzyme and recombinant 2′-O-methyltransferase enzyme may create a canonical 5′-5′-triphosphate linkage between the 5′-terminal nucleotide of an mRNA and a guanine cap nucleotide wherein the cap guanine includes an N7 methylation and the 5′-terminal nucleotide of the mRNA includes a 2′-O-methyl.
  • Cap1 structure is termed the Cap1 structure.
  • Cap structures include, but are not limited to, 7mG(5′)ppp(5′)N,pN2p (cap 0) and 7mG(5′)ppp(5′)N1mpNp (cap 1).
  • Cap 0 is a N7-methyl guanosine connected to the 5′ nucleotide through a 5′ to 5′ triphosphate linkage, typically referred to as m7G cap or m7Gppp.
  • the cap 0 structure can help provide for efficient translation of the mRNA that carries the cap.
  • An additional methylation on the 2′O position of the initiating nucleotide generates Cap 1, or refers to as m7GpppNm-, wherein Nm denotes any nucleotide with a 2′O methylation.
  • the 5′ terminal cap includes a cap analog, for example, a 5′ terminal cap may include a guanine analog.
  • Exemplary guanine analogs include, but are not limited to, inosine, N1- methyl-guanosine, 2′fluoro-guanosine, 7-deaza-guanosine, 8-oxo-guanosine, 2-amino- guanosine, LNA-guanosine, and 2-azido-guanosine.
  • the capping region may include a single cap or a series of nucleotides forming the cap. In this embodiment the capping region may be equal to any one of, at least any one of, at most any one of, or between any two of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or at least 2, or 10 or fewer nucleotides in length.
  • the cap is absent.
  • the first and second operational regions may be equal to any one of, at least any one of, at most any one of, or between any two of 3 to 40, e.g., 5-30, 10-20, 15, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, or at least 4, or 30 or fewer nucleotides in length and may comprise, in addition to a Start and/or Stop codon, one or more signal and/or restriction sequences.
  • the 5’ Cap is represented by Formula I: where R 1 and R 2 are independently guanine, adenine, or uracil.
  • B 1 and B 2 are naturally-occurring bases.
  • R 1 is methyl and R 2 is hydrogen.
  • B 1 is guanine.
  • B 1 is adenine.
  • B 2 is adenine.
  • B 2 is uracil.
  • B 2 is uracil and at least 5% of a total population of uracil nucleotides in the molecule that are downstream of B 2 have been replaced with one or more modified or unnatural nucleotides.
  • the nucleotide immediately downstream (5’ to 3’ direction) of the 5’ Cap comprises guanine.
  • B 1 is adenine and B 2 is uracil.
  • B 1 is adenine
  • B 2 is uracil
  • R 1 is methyl
  • R 2 is hydrogen.
  • the saRNA does not comprise a 5’ Cap.
  • the 5’ Cap is not represented by Formula I.
  • the RNA molecule further comprises: (1) an alphavirus 5' replication recognition sequence, and (2) an alphavirus 3' replication recognition sequence.
  • the RNA molecule encodes at least one antigen.
  • the RNA molecule comprises at least 7000 nucleotides. In some embodiments, the RNA molecule comprises at least 8000 nucleotides. In some embodiments, at least 80% of the total RNA molecules are full length.
  • the alphavirus is Venezuelan equine encephalitis virus. In some embodiments, the alphavirus is Semliki Forest virus.
  • the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B 1 is adenine, B 2 is uracil, R 1 is methyl, and R 2 is hydrogen, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with N1- methylpseudouridine, and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine.
  • the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B 1 is adenine, B 2 is uracil, R 1 is methyl, and R 2 is hydrogen, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5- methoxyuridine, and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine.
  • the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B 1 is adenine, B 2 is uracil, R 1 is methyl, and R 2 is hydrogen, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5- methyluridine, and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine.
  • the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B 1 is adenine, B 2 is uracil, R 1 is methyl, and R 2 is hydrogen, essentially all uridine nucleotides in the molecule have been replaced with about 50% 5-methoxyuridine and about 50% N1-methylpseudouridine.
  • the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B 1 is adenine, B 2 is uracil, R 1 is methyl, and R 2 is hydrogen, essentially all uridine nucleotides in the molecule have been replaced with about 75% 5-methoxyuridine and about 25% N1-methylpseudouridine.
  • the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B 1 is adenine, B 2 is uracil, R 1 is methyl, and R 2 is hydrogen, essentially all uridine nucleotides in the molecule have been replaced with about 25% 5-methoxyuridine and about 75% N1-methylpseudouridine.
  • a 5′ terminal cap is 7mG(5′)ppp(5′)NlmpNp. In some preferred In .
  • the 5’ cap comprises CLEANCAP® AU for Self-Amplifying mRNA, CLEANCAP® Reagent AU for co-transcriptional capping of mRNA, m7G(5')ppp(5')(2'OMeA)
  • Poly-A tail refers to a stretch of consecutive adenine residues, which may be attached to the 3’ end of the RNA molecule. The poly-A tail may increase the half-life of the RNA molecule. Poly-A tails may play key regulatory roles in enhancing translation efficiency and regulating the efficiency of mRNA quality control and degradation. Short sequences or hyperpolyadenylation may signal for RNA degradation.
  • Exemplary designs include a poly-A tails of about 40 adenine residues to about 80 adenine residues.
  • the RNA molecule further includes an endonuclease recognition site sequence immediately downstream of the poly A tail sequence.
  • the RNA molecule further includes a poly-A polymerase recognition sequence (e.g., AAUAAA) near its 3' end.
  • a “full length” RNA molecule is one that includes a 5’-cap and a poly A tail.
  • the poly A tail includes 5-400 nucleotides in length.
  • the poly A tail nucleotide length may be equal to any one of, at least any one of, at most any one of, or between any two of 5, 6, 7, 8, 9, 10, 15, 20, 25.30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 110, 120, 130, 140, 150, 160, 170, 180, 190, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290, 300, 310, 320, 330, 340, 350, 360, 370, 380, 390, and 400.
  • the RNA molecule includes a poly A tail that includes about 25 to about 400 adenosine nucleotides, a sequence of about 50 to about 400 adenosine nucleotides, a sequence of about 50 to about 300 adenosine nucleotides, a sequence of about 50 to about 250 adenosine nucleotides, a sequence of about 60 to about 250 adenosine nucleotides, or a sequence of about 40 to about 100 adenosine nucleotides.
  • the RNA molecule includes a poly A tail includes a sequence of greater than 30 adenosine nucleotides (“As”).
  • the RNA molecule includes a poly A tail that includes about 40 As. In some embodiments, the RNA molecule includes a poly A tail that includes about 80 As. As used herein, the term “about” refers to a deviation of ⁇ 10% of the value(s) to which it is attached.
  • the 3’ poly- A tail has a stretch of at least 10 consecutive adenosine residues and at most 300 consecutive adenosine residues. In some embodiments, the RNA molecule includes at least 20 consecutive adenosine residues and at most 40 consecutive adenosine residues. In some embodiments, the RNA molecule includes about 40 consecutive adenosine residues.
  • the RNA molecule includes about 80 consecutive adenosine residues.
  • compositions described herein include at least one saRNA as described herein.
  • Some embodiments of the present disclosure provide influenza virus (influenza) vaccines (or compositions or immunogenic compositions) that include at least one saRNA polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide or an immunogenic fragment thereof (e.g., an immunogenic fragment capable of inducing an immune response to influenza).
  • RNA molecules (capped and uncapped) in the composition are capped.
  • RNA molecules in the composition are full length RNA transcripts.
  • Purity may be determined as described herein, e.g., via reverse phase HPLC or Bioanalyzer chip-based electrophoresis and measure by, e.g., peak area of full- length RNA molecule relative to total peak.
  • a fragment analyzer FA may be used to quantify and purify the RNA. The fragment analyzer automates capillary electrophoresis and HPLC.
  • the composition is substantially free of one or more impurities or contaminants including the linear DNA template and/or reverse complement transcription products and, for instance, includes RNA molecules that are equal to any one of, at least any one of, at most any one of, or between any two of 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% pure; at least 98% pure, or at least 99% pure.
  • the composition comprises an amount of the first RNA molecule that is greater than the amount of the second RNA molecule. In some embodiments, the composition comprises an amount of the first RNA molecule that is at least about 1 to 2 times greater than the amount of the second RNA molecule.
  • the composition comprises an amount of the first RNA molecule that is at least about 1 to 100 times greater than the amount of the second RNA molecule.
  • the composition further includes a pharmaceutically acceptable carrier.
  • the composition further includes a pharmaceutically acceptable vehicle.
  • the composition further includes a lipid-based delivery system, which delivers an RNA molecule to the interior of a cell, where it can then replicate and/or express the encoded polypeptide of interest. The delivery system may have adjuvant effects which enhance the immunogenicity of an encoded antigen.
  • the composition further includes neutral lipids, cationic lipids, cholesterol, and polyethylene glycol (PEG), and forms nanoparticles that encompass the RNA molecules.
  • the composition further includes any one of a cationic lipid, a liposome, a lipid nanoparticle, a polyplex, a cochleate, a virosome, an immune-stimulating complex, a microparticle, a microsphere, a nanosphere, a unilamellar vesicle, a multilamellar vesicle, an oil-in-water emulsion, a water-in-oil emulsion, an emulsome, a polycationic peptide, and a cationic nanoemulsion.
  • the RNA molecule is encapsulated in, bound to or adsorbed on any one of a cationic lipid, a liposome, a lipid nanoparticle, a polyplex, a cochleate, a virosome, an immune- stimulating complex, a microparticle, a microsphere, a nanosphere, a unilamellar vesicle, a multilamellar vesicle, an oil-in-water emulsion, a water-in-oil emulsion, an emulsome, a polycationic peptide, and a cationic nanoemulsion, or a combination thereof.
  • compositions described herein include at least two RNA molecules: a first RNA molecule and a second RNA molecule as described herein.
  • a combination vaccine composition may be administered that includes RNA encoding at least one antigenic polypeptide protein (or antigenic portion thereof) of a first influenza virus or organism and further includes a second RNA molecule encoding at least one antigenic polypeptide protein (or antigenic portion thereof) of a second influenza virus or organism.
  • RNA can be co-formulated, for example, in a single lipid nanoparticle (LNP) or can be formulated in separate LNPs for co-administration.
  • LNP lipid nanoparticle
  • the second RNA molecule includes any one of a 5’ cap, a 5’ UTR, an open reading frame, a 3’ UTR, and a poly A sequence, or any combination thereof.
  • the second RNA molecule includes a 5’ cap moiety.
  • the second RNA molecule includes a 5’ UTR and a 3’UTR.
  • the second RNA molecule includes a 5’UTR, an open reading frame, a 3’UTR, and does not further include a 5’ cap.
  • the second RNA molecule includes a 5’ cap moiety, 5’ UTR, coding region, 3’ UTR, and a 3’ poly A sequence.
  • the second RNA molecule includes a 5’ cap moiety, 5’ UTR, noncoding region, 3’ UTR, and a 3’ poly A sequence. In some embodiments, the second RNA molecule includes a noncoding region and does not further comprise any one of a 5’ cap moiety, 5’ UTR, 3’ UTR, and a 3’ poly A sequence. In some embodiments, the second RNA molecule includes a 5’ cap moiety, a 5’ untranslated region (5’ UTR), a modified nucleotide, an open reading frame, a 3’ untranslated region (3’ UTR), and a 3’ poly A sequence.
  • compositions comprising (i) first RNA molecule encoding a gene of interest derived from influenza; and (ii) a second RNA molecule comprising a modified or unnatural nucleotide
  • the first RNA molecule is any one of the saRNA molecules described herein.
  • the first RNA molecule comprises a 5’ Cap, a 5’ untranslated region, a coding region for a nonstructural protein comprising a RNA replicase, a subgenomic promoter, an open reading frame encoding a gene of interest, a 3’ untranslated region, and a 3’ poly A sequence.
  • RNA molecule comprises natural, unmodified nucleotides and does not include a modified or unnatural nucleotide.
  • the 5’ Cap is represented by Formula I, where R1 and R2 are each independently H or Me, B1 and B2 are each independently guanine, adenine, or uracil, a 5’ untranslated region, a coding region for a nonstructural protein derived from an alphavirus, a subgenomic promoter, such as one derived from an alphavirus, an open reading frame encoding a gene of interest, a 3’ untranslated region, and a 3’ poly A sequence.
  • B1 and B2 are naturally- occurring bases.
  • R1 is methyl and R2 is hydrogen.
  • B1 is guanine.
  • B1 is adenine.
  • B2 is adenine. In some embodiments, B2 is uracil. In some embodiments, the nucleotide immediately downstream (5’ to 3’ direction) of the 5’ Cap comprises guanine. In some embodiments, B 1 is adenine and B 2 is uracil. In some embodiments, B 1 is adenine, B 2 is uracil, R 1 is methyl, and R 2 is hydrogen.
  • at least 10% of a total population of a particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 25% of a total population of a particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 75% of a total population of a particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, essentially all of a particular nucleotide population in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • the one or more modified or unnatural replacement nucleotides comprise two modified or unnatural nucleotides provided in a ratio ranging from 1:99 to 99:1, or any derivable range therein. In some embodiments, at least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 10% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 25% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • at least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 50% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • at least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 25% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides
  • at least 25% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides
  • at least 25% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides
  • at least 50% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 25% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • at least 25% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 50% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • at least 50% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • At least 75% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides.
  • at least 25% of a total population of uridine nucleotides in the first RNA molecule has been replaced with N1-methylpseudouridine.
  • at least 50% of a total population of uridine nucleotides in the first RNA molecule has been replaced with N1-methylpseudouridine.
  • At least 75% of a total population of uridine nucleotides in the first RNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the first RNA molecule has been replaced with 5-methoxyuridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with 5- methoxyuridine.
  • At least 50% of a total population of uridine nucleotides in the first RNA molecule has been replaced with 5-methyluridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with 5- methyluridine. In some embodiments, at least 50% of a total population of cytosine nucleotides in the first RNA molecule has been replaced with 5-methylcytosine. In some embodiments, essentially all cytosine nucleotides in the first RNA molecule have been replaced with 5- methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the first RNA molecule has been replaced with 2-thiouridine.
  • essentially all uridine nucleotides in the first RNA molecule have been replaced with 2-thiouridine. In some embodiments, at least 25% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, at least 75% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1- methylpseudouridine.
  • essentially all uridine nucleotides in the second RNA molecule have been replaced with N1-methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methoxyuridine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with 5-methoxyuridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methyluridine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with 5-methyluridine.
  • At least 50% of a total population of cytosine nucleotides in the second RNA molecule has been replaced with 5- methylcytosine. In some embodiments, essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 2- thiouridine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with 2-thiouridine.
  • At least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1-methylpseudouridine and essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methoxyuridine and essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine.
  • At least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methyluridine and essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine.
  • essentially all uridine nucleotides in the second RNA molecule have been replaced with about 50% 5-methoxyuridine and about 50% N1-methylpseudouridine.
  • essentially all uridine nucleotides in the second RNA molecule have been replaced with about 75% 5-methoxyuridine and about 25% N1-methylpseudouridine.
  • essentially all uridine nucleotides in the second RNA molecule have been replaced with about 25% 5-methoxyuridine and about 75% N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine and at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1-methylpseudouridine.
  • essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine and essentially all uridine nucleotides in the second RNA molecule have been replaced with N1-methylpseudouridine.
  • essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine and at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methoxyuridine.
  • essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5- methyluridine, and essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine.
  • essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine and essentially all uridine nucleotides in the second RNA molecule have been replaced with about 50% 5-methoxyuridine and about 50% N1-methylpseudouridine.
  • RNA compositions may be utilized to treat and/or prevent an influenza virus of various genotypes, strains, and isolates. Some embodiments provide methods of preventing or treating influenza viral infection comprising administering to a subject any of the RNA compositions described herein.
  • the antigen specific immune response comprises a T cell response.
  • the antigen specific immune response comprises a B cell response.
  • the antigen specific immune response comprises both a T cell response and a B cell response.
  • the method of producing an antigen specific immune response involves a single administration of the RNA composition.
  • the RNA composition is administered to the subject by intradermal, intramuscular injection, subcutaneous injection, intranasal inoculation, or oral administration.
  • the nanoparticle has a net neutral charge at a neutral pH value.
  • the RNA (e.g., mRNA) vaccine is multivalent.
  • the RNA polynucleotides or portions thereof may encode one or more polypeptides or fragments thereof of an influenza strain as an antigen.
  • Some aspects of the disclosure are directed to a method of vaccinating a subject, comprising administering to the subject in need thereof an effective amount of a composition as disclosed herein. Some aspects of the disclosure are directed to a method comprising administering to the subject in need thereof an effective amount of a composition as disclosed herein. In some embodiments, a composition as disclosed herein elicits an immune response comprising an antibody response. In some embodiments, a composition as disclosed herein elicits an immune response comprising a T cell response.
  • nucleic acid sequences can exist in a variety of instances such as: isolated segments and recombinant vectors of incorporated sequences or recombinant polynucleotides encoding polypeptides, such as antigens or one or both chains of an antibody, or a fragment, derivative, mutein, or variant thereof, polynucleotides sufficient for use as hybridization probes, PCR primers or sequencing primers for identifying, analyzing, mutating or amplifying a polynucleotide encoding a polypeptide, anti-sense nucleic acids for inhibiting expression of a polynucleotide, mRNA, saRNA, and complementary sequences of the foregoing described herein.
  • Nucleic acids that encode an epitope to which antibodies may bind are also provided.
  • the nucleic acids can be single-stranded or double-stranded and can comprise RNA and/or DNA nucleotides and artificial variants thereof (e.g., peptide nucleic acids).
  • the term “polynucleotide” refers to a nucleic acid molecule that can be recombinant or has been isolated from total genomic nucleic acid.
  • polynucleotide oligonucleotides (nucleic acids 100 residues or less in length), recombinant vectors, including, for example, plasmids, cosmids, phage, viruses, and the like.
  • Polynucleotides include, in certain aspects, regulatory sequences, isolated substantially away from their naturally occurring genes or protein encoding sequences.
  • Polynucleotides may be single- stranded (coding or antisense) or double- stranded, and may be RNA, DNA (genomic, cDNA or synthetic), analogs thereof, or a combination thereof. Additional coding or non-coding sequences may, but need not, be present within a polynucleotide.
  • the term “gene” is used to refer to a nucleic acid that encodes a protein, polypeptide, or peptide (including any sequences required for proper transcription, post- translational modification, or localization). As will be understood by those in the art, this term encompasses genomic sequences, expression cassettes, cDNA sequences, and smaller engineered nucleic acid segments that express, or may be adapted to express, proteins, polypeptides, domains, peptides, fusion proteins, and mutants. A nucleic acid encoding all or part of a polypeptide may contain a contiguous nucleic acid sequence encoding all or a portion of such a polypeptide.
  • polypeptide may be encoded by nucleic acids containing variations having slightly different nucleic acid sequences but, nonetheless, encode the same or substantially similar polypeptide.
  • polynucleotide variants having substantial identity to the sequences disclosed herein; those comprising equal to any one of, at least any one of, at most any one of, or between any two of 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity, compared to a polynucleotide sequence provided herein using the methods described herein (e.g., BLAST analysis using standard parameters).
  • the isolated polynucleotide will comprise a nucleotide sequence encoding a polypeptide that has at least 90% identity to an amino acid sequence described herein, over the entire length of the sequence; or a nucleotide sequence complementary to said isolated polynucleotide. In some embodiments, the isolated polynucleotide will comprise a nucleotide sequence encoding a polypeptide that has at least 95% identity to an amino acid sequence described herein, over the entire length of the sequence; or a nucleotide sequence complementary to said isolated polynucleotide.
  • the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 20. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 21. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 22.
  • the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 23. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 24. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 25.
  • the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 26. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 27. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 28.
  • the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 29. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 30.
  • the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 20; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 21; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 22; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 23; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 9
  • the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 20; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 21; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 22; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 23; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 9
  • the polynucleotide comprises a 5’ UTR sequence having SEQ ID NO: 20; a polynucleotide sequence having SEQ ID NO: 21; a polynucleotide sequence having SEQ ID NO: 22; a sequence having SEQ ID NO: 23; a polynucleotide sequence having SEQ ID NO: 24; a polynucleotide sequence having SEQ ID NO: 25; a polynucleotide sequence encoding a polypeptide selected from HA, NA, NP, M1, M2, NS1 and NS2; a polynucleotide sequence having SEQ ID NO: 27; a polynucleotide sequence encoding a polypeptide selected from HA, NA, NP, M1, M2, NS1 and NS2; a polynucleotide sequence having SEQ ID NO: 29; and a poly A tail comprising at least 20 consecutive adenines.
  • the polynucleotide comprises a 5’ UTR sequence having SEQ ID NO: 20; a polynucleotide sequence having SEQ ID NO: 21; a polynucleotide sequence having SEQ ID NO: 22; a sequence having SEQ ID NO: 23; a polynucleotide sequence having SEQ ID NO: 24; a polynucleotide sequence having SEQ ID NO: 25; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 26; a polynucleotide sequence having SEQ ID NO: 27; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 28; a polynucleotide sequence having SEQ ID NO: 29; and
  • the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 31. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 32. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 33.
  • the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 34. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 35. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 36.
  • the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 37. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 38. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 39.
  • the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 40.
  • the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 31; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 32; a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 33; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or
  • the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 31; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 32; a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 33; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 34; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher
  • the polynucleotide comprises a 5’ UTR sequence SEQ ID NO: SEQ ID NO: 31; a polynucleotide sequence having SEQ ID NO: 32; a polynucleotide sequence having SEQ ID NO: 33; a polynucleotide sequence having SEQ ID NO: 34; a polynucleotide sequence having SEQ ID NO: 35; a polynucleotide sequence having SEQ ID NO: 36; a polynucleotide sequence having SEQ ID NO: 37; a polynucleotide sequence encoding a polypeptide selected from HA, NA, NP, M1, M2, NS1 and NS2; a polynucleotide sequence having SEQ ID NO: 39; and a poly A tail comprising at least 20 consecutive adenines.
  • the polynucleotide comprises a 5’ UTR sequence SEQ ID NO: SEQ ID NO: 31; a polynucleotide sequence having SEQ ID NO: 32; a polynucleotide sequence having SEQ ID NO: 33; a polynucleotide sequence having SEQ ID NO: 34; a polynucleotide sequence having SEQ ID NO: 35; a polynucleotide sequence having SEQ ID NO: 36; a polynucleotide sequence having SEQ ID NO: 37; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 38; a polynucleotide sequence having SEQ ID NO: 39; and a poly A tail comprising at least 20 consecutive adenines.
  • nucleic acid segments regardless of the length of the coding sequence itself, may be combined with other nucleic acid sequences, such as promoters, polyadenylation signals, additional restriction enzyme sites, multiple cloning sites, other coding segments, and the like, such that their overall length may vary considerably.
  • the nucleic acids can be any length.
  • nucleotides in length can comprise one or more additional sequences, for example, regulatory sequences, and/or be a part of a larger nucleic acid, for example, a vector.
  • nucleic acid fragment of almost any length may be employed, with the total length being limited by the ease of preparation and use in the intended recombinant nucleic acid protocol.
  • a nucleic acid sequence may encode a polypeptide sequence with additional heterologous coding sequences, for example to allow for purification of the polypeptide, transport, secretion, post-translational modification, or for therapeutic benefits such as targeting or efficacy.
  • a tag or other heterologous polypeptide may be added to the modified polypeptide-encoding sequence, wherein “heterologous” refers to a polypeptide that is not the same as the modified polypeptide.
  • the saRNA composition comprises lipids.
  • the lipids and saRNA may together form nanoparticles.
  • the LNP integrity of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is about 20% or higher, about 25% or higher, about 30% or higher, about 35% or higher, about 40% or higher, about 45% or higher, about 50% or higher, about 55% or higher, about 60% or higher, about 65% or higher, about 70% or higher, about 75% or higher, about 80% or higher, about 85% or higher, about 90% or higher, about 95% or higher, about 96% or higher, about 97% or higher, about 98% or higher, or about 99% or higher.
  • the LNP integrity of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is higher than the LNP integrity of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation produced by a comparable method by about 5% or higher, about 10% or more, about 15% or more, about 20% or more, about 30% or more, about 40% or more, about 50% or more, about 60% or more, about 70% or more, about 80% or more, about 90% or more, about 1 folds or more, about 2 folds or more, about 3 folds or more, about 4 folds or more, about 5 folds or more, about 10 folds or more, about 20 folds or more, about 30 folds or more, about 40 folds or more, about 50 folds or more, about 100 folds or more, about 200 folds or more, about 300 folds or more, about 400 folds or more, about 500 folds or more, about 1000 folds or more, about 2000 folds or more, about 3000 folds or more, about 4
  • the Txo% of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is about 12 months or longer, about 15 months or longer, about 18 months or longer, about 21 months or longer, about 24 months or longer, about 27 months or longer, about 30 months or longer, about 33 months or longer, about 36 months or longer, about 48 months or longer, about 60 months or longer, about 72 months or longer, about 84 months or longer, about 96 months or longer, about 108 months or longer, about 120 months or longer.
  • the Txo% of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is longer than the Txo% of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation produced by a comparable method by about 5% or higher, about 10% or more, about 15% or more, about 20% or more, about 30% or more, about 40% or more, about 50% or more, about 60% or more, about 70% or more, about 80% or more, about 90% or more, about 1 folds or more, about 2 folds or more, about 3 folds or more, about 4 folds or more, about 5 folds or more.
  • the T1/2 of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is about 12 months or longer, about 15 months or longer, about 18 months or longer, about 21 months or longer, about 24 months or longer, about 27 months or longer, about 30 months or longer, about 33 months or longer, about 36 months or longer, about 48 months or longer, about 60 months or longer, about 72 months or longer, about 84 months or longer, about 96 months or longer, about 108 months or longer, about 120 months or longer.
  • the T1/2 of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is longer than the T1/2 of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation produced by a comparable method by about 5% or higher, about 10% or more, about 15% or more, about 20% or more, about 30% or more, about 40% or more, about 50% or more, about 60% or more, about 70% or more, about 80% or more, about 90% or more, about 1 folds or more, about 2 folds or more, about 3 folds or more, about 4 folds or more, about 5 folds or more
  • “Tx” refers to the amount of time lasted for the nucleic acid integrity (e.g., mRNA integrity) of a LNP, LNP suspension, lyophilized LNP composition, or LNP formulation to degrade to about X of the initial integrity of the nucleic acid (e.g., mRNA) used for the preparation of the LNP, LNP suspension
  • “T8o%” refers to the amount of time lasted for the nucleic acid integrity (e.g., mRNA integrity) of a LNP, LNP suspension, lyophilized LNP composition, or LNP formulation to degrade to about 80% of the initial integrity of the nucleic acid (e.g., mRNA) used for the preparation of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation.
  • nucleic acid integrity e.g., mRNA integrity
  • T1/2 refers to the amount of time lasted for the nucleic acid integrity (e.g., mRNA integrity) of a LNP, LNP suspension, lyophilized LNP composition, or LNP formulation to degrade to about 1/2 of the initial integrity of the nucleic acid (e.g., mRNA) used for the preparation of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation.
  • Lipid nanoparticles may include a lipid component and one or more additional components, such as a therapeutic and/or prophylactic, such as a nucleic acid.
  • a LNP may be designed for one or more specific applications or targets.
  • the elements of a LNP may be selected based on a particular application or target, and/or based on the efficacy, toxicity, expense, ease of use, availability, or other feature of one or more elements.
  • the particular formulation of a LNP may be selected for a particular application or target according to, for example, the efficacy and toxicity of particular combination of elements.
  • the efficacy and tolerability of a LNP formulation may be affected by the stability of the formulation.
  • the lipid component of a LNP may include, for example, a cationic lipid, a phospholipid (such as an unsaturated lipid, e.g., DOPE or DSPC), a PEG lipid, and a structural lipid.
  • the elements of the lipid component may be provided in specific fractions.
  • the LNP further comprises a phospholipid, a PEG lipid, a structural lipid, or any combination thereof. Suitable phospholipids, PEG lipids, and structural lipids for the methods of the present disclosure are further disclosed herein.
  • the lipid component of a LNP includes a cationic lipid, a phospholipid, a PEG lipid, and a structural lipid.
  • the lipid component of the lipid nanoparticle includes about 30 mol % to about 60 mol % cationic lipid, about 0 mol % to about 30 mol % phospholipid, about 18.5 mol % to about 48.5 mol % structural lipid, and about 0 mol % to about 10 mol % of PEG lipid, provided that the total mol % does not exceed 100%.
  • the lipid component of the lipid nanoparticle includes about 35 mol % to about 55 mol % compound of cationic lipid, about 5 mol % to about 25 mol % phospholipid, about 30 mol % to about 40 mol % structural lipid, and about 0 mol % to about 10 mol % of PEG lipid.
  • the lipid component includes about 50 mol % said cationic lipid, about 10 mol % phospholipid, about 38.5 mol % structural lipid, and about 1.5 mol % of PEG lipid.
  • the lipid component includes about 40 mol % said cationic lipid, about 20 mol % phospholipid, about 38.5 mol % structural lipid, and about 1.5 mol % of PEG lipid.
  • the phospholipid may be DOPE or DSPC.
  • the PEG lipid may be PEG-DMG and/or the structural lipid may be cholesterol.
  • the amount of a therapeutic and/or prophylactic in a LNP may depend on the size, composition, desired target and/or application, or other properties of the lipid nanoparticle as well as on the properties of the therapeutic and/or prophylactic.
  • the amount of an RNA useful in a LNP may depend on the size, sequence, and other characteristics of the RNA.
  • the relative amounts of a therapeutic and/or prophylactic (i.e. pharmaceutical substance) and other elements (e.g., lipids) in a LNP may also vary.
  • the wt/wt ratio of the lipid component to a therapeutic and/or prophylactic in a LNP may be from about 5: 1 to about 60: 1, such as 5: 1, 6: 1, 7:1,8:1,9:1, 10:1, 11:1, 12:1, 13:1, 14:1, 15:1, 16:1, 17:1, 18:1, 19:1, 20:1, 25:1,30:1,35:1, 40: 1, 45: 1, 50: 1, and 60: 1.
  • the wt/wt ratio of the lipid component to a therapeutic and/or prophylactic may be from about 10: 1 to about 40: 1. In certain embodiments, the wt/wt ratio is about 20: 1.
  • the amount of a therapeutic and/or prophylactic in a LNP may, for example, be measured using absorption spectroscopy (e.g., ultraviolet-visible spectroscopy).
  • the ionizable lipid is a compound of Formula (I): or isomers thereof, wherein: consisting of C5-30 alkyl, C5-20 alkenyl, -R*YR”, -YR”, and - R”M’R’; R2 and R3 are independently selected from the group consisting of H, C1-14 alkyl, C2- 14 alkenyl, -R*YR”, -YR”, and -R*OR”, or R2 and R3, together with the atom to which they are attached, form a heterocycle or carbocycle; R4 is selected from the group consisting of hydrogen, a C3-6 carbocycle, -(CH2)nQ, - (CH2)nCHQR, -CHQR, -CQ(R)2, and unsubstituted C1-6 alkyl, where Q is selected from a carbocycle, heterocycle, -OR, -0(CH2)nN(R)2, -C(0)0R, - 0
  • the ionizable lipid is SM-102. In some embodiments, the ionizable lipid is ALC-0315. In some embodiments, the ionizable lipid is: . In some embodiments, the compounds have the following structure (I): salt, tautomer, prodrug or stereoisomer thereof, wherein: one of L1 or L2 is —O(C ⁇ O)—, —(C ⁇ O)O—, —C( ⁇ O)—, —O—, —S(O)x—, —S—S—, — C( ⁇ O)S—, SC( ⁇ O)—, —NRaC( ⁇ O)—, —C( ⁇ O)NRa—, NRaC( ⁇ O)NRa—, —OC( ⁇ O)NRa— or —NRaC( ⁇ O)O—, and the other of L1 or L2 is —O(C ⁇ O)—, —(C ⁇ O)O—, —(C ⁇ O
  • the lipid component of a lipid nanoparticle composition may include one or more molecules comprising polyethylene glycol, such as PEG or PEG-modified lipids. Such species may be alternately referred to as PEGylated lipids.
  • a PEG lipid is a lipid modified with polyethylene glycol.
  • a PEG lipid may be selected from the non-limiting group including PEG- modified phosphatidylethanolamines, PEG-modified phosphatidic acids, PEG-modified ceramides, PEG-modified dialkylamines, PEG-modified diacylglycerols, PEG-modified dialkylglycerols, and mixtures thereof.
  • a PEG lipid may be PEG-c- DOMG, PEG-DMG, PEG-DLPE, PEG-DMPE, PEG-DPPC, or a PEG-DSPE lipid.
  • PEG lipid refers to polyethylene glycol (PEG) -modified lipids.
  • PEG lipids include PEG-modified phosphatidylethanolamine and phosphatidic acid, PEG-ceramide conjugates (e.g., PEG-CerCl4 or PEG-CerC20), PEG- modified dialkylamines and PEG-modified l,2-diacyloxypropan-3 -amines.
  • lipids are also referred to as PEGylated lipids.
  • a PEG lipid can be PEG-c-DOMG, PEG- DMG, PEG-DLPE, PEG- DMPE, PEG-DPPC, or a PEG-DSPE lipid.
  • the PEG-modified lipids are a modified form of PEG DMG.
  • the PEG-modified lipid is PEG lipid with the formula (IV): alkyl chain containing from 10 to 30 carbon atoms, wherein the alkyl chain is optionally interrupted by one or more ester bonds; and w has a mean value ranging from 30 to 60.
  • the disclosure relates to an immunogenic composition
  • an immunogenic composition including: (i) a first ribonucleic acid (RNA) polynucleotide having an open reading frame encoding a first antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, and (ii) a second RNA polynucleotide having an open reading frame encoding a second antigen, said second antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the first and second RNA polynucleotides are formulated in a lipid nanoparticle (LNP).
  • the first and second antigens include hemagglutinin (HA), or an immunogenic fragment or variant thereof.
  • the first antigen includes an HA from a different subtype of influenza virus to the influenza virus antigenic polypeptide or an immunogenic fragment thereof of the second antigen.
  • the composition further includes (iii) a third antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the third antigen is from influenza virus but is from a different strain of influenza virus to both the first and second antigens.
  • the first, second and third RNA polynucleotides are formulated in a lipid nanoparticle.
  • the composition comprises an octavalent influenza vaccine comprises RNA encoding an antigenic polypeptide associated with two type A viruses and two type B viruses that are predicted to be prevalent in a relevant jurisdiction.
  • an octavalent influenza vaccine comprises RNA encoding an antigenic polypeptide derived from HA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type B virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type B virus, RNA encoding an antigenic polypeptide derived from one antigenic polypeptide selected from NA, NP, M1, M2, NS1 and NS2 from an influenza type A virus, RNA encoding an antigenic polypeptide derived from one antigenic polypeptide selected from NA, NP, M1, M2, NS1 and NS2 from an influenza type A virus, RNA encoding an antigenic polypeptide derived
  • an octavalent influenza vaccine comprises RNA encoding an antigenic polypeptide derived from HA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type B virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type B virus, RNA encoding an antigenic polypeptide derived from NA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from NA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from NA from an influenza type B virus, and RNA encoding an antigenic polypeptide derived from NA from an influenza type B virus.
  • an octavalent influenza vaccine comprises RNA encoding an antigenic polypeptide associated with an H1N1 influenza virus, RNA encoding an antigenic polypeptide associated with an H3N2 influenza virus, RNA encoding an antigenic polypeptide associated with a Victoria lineage influenza virus, and RNA encoding an antigenic polypeptide associated with a Yamagata lineage influenza virus.
  • an octavalent influenza vaccine comprises RNA associated with influenza types that are predicted to be prevalent in a relevant jurisdiction (e.g., HA polypeptides associated with the H1N1, H3N2, B/Victoria, and B/Yamagata influenza viruses that are predicted to be prevalent in a relevant geography).
  • the RNA (e.g., mRNA) vaccines may be utilized in various settings depending on the prevalence of the infection or the degree or level of unmet medical need.
  • the RNA vaccines may be utilized to treat and/or prevent an influenza virus of various genotypes, strains, and isolates.
  • the RNA vaccines typically have superior properties in that they produce much larger antibody titers and produce responses earlier than commercially available anti-viral therapeutic treatments. While not wishing to be bound by theory, it is believed that the RNA vaccines, as mRNA polynucleotides, are better designed to produce the appropriate protein conformation upon translation as the RNA vaccines co-opt natural cellular machinery.
  • RNA e.g., mRNA
  • a method of purifying an RNA polynucleotide synthesized by in vitro transcription includes ultrafiltration and diafiltration. In some embodiments, the method does not comprise a chromatography step. In some embodiments, the purified RNA polynucleotide is substantially free of contaminants comprising short abortive RNA species, long abortive RNA species, double- stranded RNA (dsRNA), residual plasmid DNA, residual in vitro transcription enzymes, residual solvent and/or residual salt.
  • dsRNA double- stranded RNA
  • the residual plasmid DNA is ⁇ 500 ng DNA/mg RNA. In some embodiments, purity of the purified mRNA is between about 60% and about 100%.
  • a method of producing an RNA polynucleotide-encapsulated LNP is provided. The method includes buffer exchanging the LNPs. The method further includes concentrating the LNPs via flat sheet cassette membranes. In preferred embodiments, the UFDF process does not utilize hollow fiber membranes. There may be situations in which persons are at risk for infection with more than one strain of influenza virus.
  • RNA (e.g., mRNA) therapeutic vaccines are particularly amenable to combination vaccination approaches due to a number of factors including, but not limited to, speed of manufacture, ability to rapidly tailor vaccines to accommodate perceived geographical threat, and the like.
  • the vaccines utilize the human body to produce the antigenic protein, the vaccines are amenable to the production of larger, more complex antigenic proteins, allowing for proper folding, surface expression, antigen presentation, etc. in the human subject.
  • a combination vaccine can be administered that includes RNA (e.g., mRNA) encoding at least one antigenic polypeptide protein (or antigenic portion thereof) of a first influenza virus or organism and further includes RNA encoding at least one antigenic polypeptide protein (or antigenic portion thereof) of a second influenza virus or organism.
  • RNA e.g., mRNA
  • LNP lipid nanoparticle
  • influenza virus vaccines or compositions or immunogenic compositions
  • the at least one antigenic polypeptide is one of the defined antigenic subdomains of HA, termed HA1, HA2, or a combination of HA1 and HA2, and at least one antigenic polypeptide selected from neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non-structural protein 2 (NS2).
  • NA neuraminidase
  • NP nucleoprotein
  • M1 matrix protein 1
  • M2 matrix protein 2
  • NS1 and non-structural protein 2 (NS2) non-structural protein 2
  • the at least one antigenic polypeptide is HA or derivatives thereof comprising antigenic sequences from HA1 and/or HA2, and at least one antigenic polypeptide selected from NA, NP, M1, M2, NS1 and NS2.
  • the at least one antigenic polypeptide is HA or derivatives thereof comprising antigenic sequences from HA1 and/or HA2 and at least two antigenic polypeptides selected from NA, NP, M1, M2, NS1 and NS2.
  • a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding an influenza virus protein, or an immunogenic fragment thereof.
  • a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding multiple influenza virus proteins, or immunogenic fragments thereof.
  • a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one HA1, HA2, or a combination of both).
  • RNA e.g., mRNA
  • an immunogenic fragment thereof e.g., at least one HA1, HA2, or a combination of both.
  • a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one HA1, HA2, or a combination of both, of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least one other RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a protein selected from a HA protein, NP protein, a NA protein, a M1 protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus.
  • RNA e.g., mRNA
  • a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least two other RNAs (e.g., mRNAs) polynucleotides having two open reading frames encoding two proteins selected from a HA protein, NP protein, a NA protein, a M1 protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus.
  • RNA e.g., mRNA
  • a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least three other RNAs (e.g., mRNAs) polynucleotides having three open reading frames encoding three proteins selected from a HA protein, NP protein, a NA protein, a M protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus.
  • RNA e.g., mRNA
  • a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least four other RNAs (e.g., mRNAs) polynucleotides having four open reading frames encoding four proteins selected from a HA protein, NP protein, a NA protein, a M1 protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus.
  • RNA e.g., mRNA
  • a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least five other RNAs (e.g., mRNAs) polynucleotides having five open reading frames encoding five proteins selected from a HA protein, NP protein, a NA protein, a M1 protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus.
  • RNA e.g., mRNA
  • a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein or an immunogenic fragment thereof (e.g., at least one of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18), a HA protein, a NP protein or an immunogenic fragment thereof, a NA protein or an immunogenic fragment thereof, a M1 protein or an immunogenic fragment thereof, a M2 protein or an immunogenic fragment thereof, a NS1 protein or an immunogenic fragment thereof and a NS2 protein or an immunogenic fragment thereof obtained from influenza virus.
  • RNA e.g., mRNA
  • an influenza RNA composition includes an saRNA encoding an antigenic fusion protein.
  • the encoded antigen or antigens may include two or more proteins (e.g., protein and/or protein fragment) joined together.
  • the protein to which a protein antigen is fused does not promote a strong immune response to itself, but rather to the influenza antigen.
  • Antigenic fusion proteins retain the functional property from each original protein.
  • Some embodiments of the present disclosure provide the following novel influenza virus polypeptide sequences: H1HA10-Foldon_ ⁇ Ngly1; H1HA10TM-PR8 (H1 A/Puerto Rico/8/34 HA); H1HA10-PR8-DS (H1 A/Puerto Rico/8/34 HA; pH1HA10-Cal04-DS (H1 A/California/04/2009 HA); Pandemic H1HA10 from California 04; pH1HA10-ferritin; HA10; Pandemic H1HA10 from California 04; Pandemic H1HA10 from California 04 strain/without foldon and with K68C/R76C mutation for trimerization; H1HA10 from A/Puerto Rico/8/34 strain, without foldon and with Y94D/N95L mutation for trimerization; H1HA10 from A/Puerto Rico/8/34 strain, without foldon and with K68C/R76C mutation for trimerization; H1N1 A/Viet Nam/850
  • influenza virus (influenza) vaccines that include at least one RNA polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide or an immunogenic fragment of the novel influenza virus polypeptide sequences described above (e.g., an immunogenic fragment capable of inducing an immune response to influenza).
  • an influenza vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide comprising a modified sequence that is at least 75% (e.g., any number between 75% and 100%, inclusive, e.g., 70%, 80%, 85%, 90%, 95%, 99%, and 100%) identity to an amino acid sequence of the novel influenza virus sequences described above.
  • the modified sequence can be at least 75% (e.g., any number between 75% and 100%, inclusive, e.g., 70%, 80%, 85%, 90%, 95%, 99%, and 100%) identical to an amino acid sequence of the novel influenza virus sequences described above.
  • Some embodiments of the present disclosure provide an isolated nucleic acid comprising a sequence encoding the novel influenza virus polypeptide sequences described above; an expression vector comprising the nucleic acid; and a host cell comprising the nucleic acid.
  • the present disclosure also provides a method of producing a polypeptide of any of the novel influenza virus sequences described above.
  • a method may include culturing the host cell in a medium under conditions permitting nucleic acid expression of the novel influenza virus sequences described above, and purifying from the cultured cell or the medium of the cell a novel influenza virus polypeptide.
  • the present disclosure also provides antibody molecules, including full length antibodies and antibody derivatives, directed against the novel influenza virus sequences.
  • an open reading frame of a RNA (e.g., mRNA) vaccine is codon- optimized.
  • the open reading frame which the influenza polypeptide or fragment thereof is encoded is codon-optimized.
  • Some embodiments provide use of an influenza vaccine that includes at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide or an immunogenic fragment thereof, wherein at least 80% (e.g., 85%, 90%, 95%, 98%, 99%, 100%) of the uracil in the open reading frame have a chemical modification, optionally wherein the vaccine is formulated in a lipid nanoparticle.
  • RNA ribonucleic acid
  • RNA (e.g., mRNA) vaccine further comprising an adjuvant.
  • at least one RNA polynucleotide encodes at least one influenza antigenic polypeptide that attaches to cell receptors.
  • at least one RNA polynucleotide encodes at least one influenza antigenic polypeptide that causes fusion of viral and cellular membranes.
  • At least one RNA polynucleotide encodes at least one influenza antigenic polypeptide that is responsible for binding of the virus to a cell being infected.
  • a vaccine that includes at least one ribonucleic acid (RNA) (e.g., mRNA) polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide, at least one 5′ terminal cap and at least one chemical modification, formulated within a lipid nanoparticle.
  • RNA ribonucleic acid
  • mRNA e.g., mRNA
  • a 5′ terminal cap is 7mG(5′)ppp(5′)NlmpNp.
  • 5- methyluridine 2-thio-1-methyl-1-deaza-pseudouridine, 2-thio-1-methyl-pseudouridine, 2-thio-5- aza-uridine, 2-thio-dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4- methoxy-2-thio-pseudouridine, 4-methoxy-pseudouridine, 4-thio-1-methyl-pseudouridine, 4-thio- pseudouridine, 5-aza-uridine, dihydropseudouridine, 5-methoxyuridine and 2′-O-methyl uridine.
  • the chemical modification is in the 5-position of the uracil. In some embodiments, the chemical modification is a N1-methylpseudouridine. In some embodiments, the chemical modification is a N1-ethylpseudouridine. In some embodiments, a lipid nanoparticle comprises a cationic lipid, a PEG-modified lipid, a sterol and a non-cationic lipid. In some embodiments, a cationic lipid is an ionizable cationic lipid and the non-cationic lipid is a neutral lipid, and the sterol is a cholesterol.
  • a cationic lipid is selected from the group consisting of 2,2-dilinoleyl-4- dimethylaminoethyl-[1,3]-dioxolane (DLin-KC2-DMA), dilinoleyl-methyl-4-dimethylaminobutyrate (DLin-MC3-DMA), di((Z)-non-2-en-1-yl) 9-((4-(dimethylamino)butanoyl)oxy)heptadecanedioate (L319), (12Z,15Z)—N,N-dimethyl-2-nonylhenicosa-12,15-dien-1-amine (L608), and N,N- dimethyl-1-[(1S,2R)-2-octylcyclopropyl]heptadecan-8-amine (L530).
  • DLin-KC2-DMA 2,2-dilinoleyl-4- dimethylaminoethyl-[1,3]-d
  • RNA e.g., mRNA
  • a vaccine that includes at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide, wherein at least 80% (e.g., 85%, 90%, 95%, 98%, 99%) of the uracil in the open reading frame have a chemical modification
  • the vaccine is formulated in a lipid nanoparticle (e.g., a lipid nanoparticle comprises a cationic lipid, a PEG- modified lipid, a sterol and a non-cationic lipid).
  • 100% of the uracil in the open reading frame have a chemical modification.
  • a chemical modification is in the 5-position of the uracil. In some embodiments, a chemical modification is a N1-methyl pseudouridine. In some embodiments, 100% of the uracil in the open reading frame have a N1-methyl pseudouridine in the 5-position of the uracil.
  • an open reading frame of a RNA (e.g., mRNA) polynucleotide encodes at least one influenza antigenic polypeptides. In some embodiments, the open reading frame encodes at least two, at least five, or at least ten antigenic polypeptides. In some embodiments, the open reading frame encodes at least 100 antigenic polypeptides.
  • the open reading frame encodes 1-100 antigenic polypeptides.
  • a vaccine comprises at least two RNA (e.g., mRNA) polynucleotides, each having an open reading frame encoding at least one influenza antigenic polypeptide.
  • the vaccine comprises at least five or at least ten RNA (e.g., mRNA) polynucleotides, each having an open reading frame encoding at least one antigenic polypeptide or an immunogenic fragment thereof.
  • the vaccine comprises at least 100 RNA (e.g., mRNA) polynucleotides, each having an open reading frame encoding at least one antigenic polypeptide.
  • the vaccine comprises 2- 100 RNA (e.g., mRNA) polynucleotides, each having an open reading frame encoding at least one antigenic polypeptide.
  • the nanoparticle has a mean diameter of 50-200 nm.
  • the nanoparticle is a lipid nanoparticle.
  • the lipid nanoparticle comprises a cationic lipid, a PEG-modified lipid, a sterol and a non-cationic lipid.
  • the lipid nanoparticle comprises a molar ratio of about 20-60% cationic lipid, 0.5-15% PEG-modified lipid, 25-55% sterol, and 25% non-cationic lipid.
  • the cationic lipid is an ionizable cationic lipid and the non-cationic lipid is a neutral lipid, and the sterol is a cholesterol.
  • the nanoparticle has a polydispersity value of less than 0.4 (e.g., less than 0.3, 0.2 or 0.1).
  • the nanoparticle has a net neutral charge at a neutral pH value.
  • the RNA (e.g., mRNA) vaccine is multivalent.
  • Some embodiments of the present disclosure provide methods of inducing an antigen specific immune response in a subject, comprising administering to the subject any of the RNA (e.g., mRNA) vaccine as provided herein in an amount effective to produce an antigen-specific immune response.
  • the RNA (e.g., mRNA) vaccine is an influenza vaccine.
  • the RNA (e.g., mRNA) vaccine is a combination vaccine comprising a combination of influenza vaccines (a broad spectrum influenza vaccine).
  • an antigen-specific immune response comprises a T cell response or a B cell response.
  • a method of producing an antigen-specific immune response comprises administering to a subject a single dose (no booster dose) of an influenza RNA (e.g., mRNA) vaccine of the present disclosure.
  • a method further comprises administering to the subject a second (booster) dose of an influenza RNA (e.g., mRNA) vaccine. Additional doses of an influenza RNA (e.g., mRNA) vaccine may be administered.
  • the subjects exhibit a seroconversion rate of at least 80% (e.g., at least 85%, at least 90%, or at least 95%) following the first dose or the second (booster) dose of the vaccine.
  • Seroconversion is the time period during which a specific antibody develops and becomes detectable in the blood. After seroconversion has occurred, a virus can be detected in blood tests for the antibody. During an infection or immunization, antigens enter the blood, and the immune system begins to produce antibodies in response. Before seroconversion, the antigen itself may or may not be detectable, but antibodies are considered absent. During seroconversion, antibodies are present but not yet detectable. Any time after seroconversion, the antibodies can be detected in the blood, indicating a prior or current infection.
  • an influenza RNA e.g., mRNA
  • an influenza RNA vaccine is administered to a subject by intradermal injection, intramuscular injection, or by intranasal administration.
  • an influenza RNA (e.g., mRNA) vaccine is administered to a subject by intramuscular injection.
  • Some embodiments, of the present disclosure provide methods of inducing an antigen specific immune response in a subject, including administering to a subject an influenza RNA (e.g., mRNA) vaccine in an effective amount to produce an antigen specific immune response in a subject.
  • Antigen-specific immune responses in a subject may be determined, in some embodiments, by assaying for antibody titer (for titer of an antibody that binds to an influenza antigenic polypeptide) following administration to the subject of any of the influenza RNA (e.g., mRNA) vaccines of the present disclosure.
  • the anti-antigenic polypeptide antibody titer produced in the subject is increased by at least 1 log relative to a control. In some embodiments, the anti-antigenic polypeptide antibody titer produced in the subject is increased by 1-3 log relative to a control. In some embodiments, the anti-antigenic polypeptide antibody titer produced in a subject is increased at least 2 times relative to a control. In some embodiments, the anti-antigenic polypeptide antibody titer produced in the subject is increased at least 5 times relative to a control. In some embodiments, the anti-antigenic polypeptide antibody titer produced in the subject is increased at least 10 times relative to a control.
  • the anti- antigenic polypeptide antibody titer produced in the subject is increased 2-10 times relative to a control.
  • the control is an anti-antigenic polypeptide antibody titer produced in a subject who has not been administered a RNA (e.g., mRNA) vaccine of the present disclosure.
  • the control is an anti-antigenic polypeptide antibody titer produced in a subject who has been administered a live attenuated or inactivated influenza, or wherein the control is an anti-antigenic polypeptide antibody titer produced in a subject who has been administered a recombinant or purified influenza protein vaccine.
  • control is an anti-antigenic polypeptide antibody titer produced in a subject who has been administered an influenza virus-like particle (VLP) vaccine.
  • VLP influenza virus-like particle
  • a RNA (e.g., mRNA) vaccine of the present disclosure is administered to a subject in an effective amount (an amount effective to induce an immune response).
  • the effective amount is a dose equivalent to an at least 2-fold, at least 4-fold, at least 10-fold, at least 100-fold, at least 1000-fold reduction in the standard of care dose of a recombinant influenza protein vaccine, wherein the anti-antigenic polypeptide antibody titer produced in the subject is equivalent to an anti-antigenic polypeptide antibody titer produced in a control subject administered the standard of care dose of a recombinant influenza protein vaccine, a purified influenza protein vaccine, a live attenuated influenza vaccine, an inactivated influenza vaccine, or an influenza VLP vaccine.
  • the effective amount is a dose equivalent to 2-1000-fold reduction in the standard of care dose of a recombinant influenza protein vaccine, wherein the anti-antigenic polypeptide antibody titer produced in the subject is equivalent to an anti-antigenic polypeptide antibody titer produced in a control subject administered the standard of care dose of a recombinant influenza protein vaccine, a purified influenza protein vaccine, a live attenuated influenza vaccine, an inactivated influenza vaccine, or an influenza VLP vaccine.
  • the control is an anti-antigenic polypeptide antibody titer produced in a subject who has been administered a virus-like particle (VLP) vaccine comprising structural proteins of influenza.
  • VLP virus-like particle
  • the RNA (e.g., mRNA) vaccine is formulated in an effective amount to produce an antigen specific immune response in a subject.
  • the effective amount is a total dose of 25 ⁇ g to 1000 ⁇ g, or 50 ⁇ g to 1000 ⁇ g.
  • the effective amount is a total dose of 100 ⁇ g.
  • the effective amount is a dose of 25 ⁇ g administered to the subject a total of two times.
  • the effective amount is a dose of 100 ⁇ g administered to the subject a total of two times.
  • the effective amount is a dose of 400 ⁇ g administered to the subject a total of two times.
  • the effective amount is a dose of 500 ⁇ g administered to the subject a total of two times. In some embodiments, the effective amount is a total dose of 1 ⁇ g to 1000 ⁇ g, or 1 ⁇ g to 100 ⁇ g of saRNA. In some embodiments, the effective amount is a total dose of 30 ⁇ g. In some embodiments, the effective amount is a dose of 10 ⁇ g administered to the subject a total of two times. In some embodiments, the effective amount is a dose of 10 ⁇ g administered to the subject a total of two times. In some embodiments, the effective amount is a dose of 15 ⁇ g administered to the subject a total of two times.
  • the effective amount is a dose of 30 ⁇ g administered to the subject a total of two times.
  • the method includes administering to the subject a saRNA composition described herein at dosage of between 10 ⁇ g/kg and 400 ⁇ g/kg is administered to the subject.
  • the dosage of the saRNA polynucleotide is 1-5 ⁇ g, 5-10 ⁇ g, 10-15 ⁇ g, 15-20 ⁇ g, 10-25 ⁇ g, 20-25 ⁇ g, 20-50 ⁇ g, 30-50 ⁇ g, 40-50 ⁇ g, 40-60 ⁇ g, 60-80 ⁇ g, 60-100 ⁇ g, 50-100 ⁇ g, 80-120 ⁇ g, 40-120 ⁇ g, 40-150 ⁇ g, 50-150 ⁇ g, 50-200 ⁇ g, 80-200 ⁇ g, 100-200 ⁇ g, 120-250 ⁇ g, 150-250 ⁇ g, 180-280 ⁇ g, 200-300 ⁇ g, 50-300 ⁇ g, 80-300 ⁇ g, 100-300 ⁇ g, 40- 300 ⁇ g, 50-350 ⁇ g, 100-350 ⁇ g, 200-350 ⁇ g, 300-350 ⁇ g, 320-400 ⁇ g, 40-380 ⁇ g, 40-100 ⁇ g, 100
  • the saRNA composition is administered to the subject by intradermal or intramuscular injection. In some embodiments, the saRNA composition is administered to the subject on day zero. In some embodiments, a second dose of the saRNA composition is administered to the subject on day twenty-one. In some embodiments, the efficacy (or effectiveness) of a RNA (e.g., mRNA) vaccine is greater than 60%. In some embodiments, the RNA (e.g., mRNA) polynucleotide of the vaccine at least one Influenza antigenic polypeptide. Vaccine efficacy may be assessed using standard analyses. For example, vaccine efficacy may be measured by double-blind, randomized, clinical controlled trials.
  • AR disease attack rate
  • Efficacy (ARU ⁇ ARV)/ARU ⁇ 100
  • Efficacy (1 ⁇ RR) ⁇ 100.
  • vaccine effectiveness may be assessed using standard analyses.
  • Vaccine effectiveness is an assessment of how a vaccine (which may have already proven to have high vaccine efficacy) reduces disease in a population. This measure can assess the net balance of benefits and adverse effects of a vaccination program, not just the vaccine itself, under natural field conditions rather than in a controlled clinical trial.
  • Vaccine effectiveness is proportional to vaccine efficacy (potency) but is also affected by how well target groups in the population are immunized, as well as by other non-vaccine-related factors that influence the ‘real-world’ outcomes of hospitalizations, ambulatory visits, or costs.
  • a retrospective case control analysis may be used, in which the rates of vaccination among a set of infected cases and appropriate controls are compared.
  • the efficacy (or effectiveness) of a RNA (e.g., mRNA) vaccine is at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, or at least 90%.
  • the vaccine immunizes the subject against Influenza for up to 2 years. In some embodiments, the vaccine immunizes the subject against Influenza for more than 2 years, more than 3 years, more than 4 years, or for 5-10 years. In some embodiments, the subject is about 5 years old or younger.
  • the subject may be between the ages of about 1 year and about 5 years (e.g., about 1, 2, 3, 5 or 5 years), or between the ages of about 6 months and about 1 year (e.g., about 6, 7, 8, 9, 10, 11 or 12 months).
  • the subject is about 12 months or younger (e.g., 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2 months or 1 month).
  • the subject is about 6 months or younger.
  • the RNA composition is administered to the subject by intradermal or intramuscular injection.
  • the RNA composition is administered to the subject on day zero.
  • a second dose of the RNA composition is administered to the subject on day twenty-one.
  • the subject was born full term (e.g., about 37-42 weeks). In some embodiments, the subject was born prematurely, for example, at about 36 weeks of gestation or earlier (e.g., about 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26 or 25 weeks). For example, the subject may have been born at about 32 weeks of gestation or earlier. In some embodiments, the subject was born prematurely between about 32 weeks and about 36 weeks of gestation. In such subjects, a RNA (e.g., mRNA) vaccine may be administered later in life, for example, at the age of about 6 months to about 5 years, or older.
  • a RNA e.g., mRNA
  • the subject is a young adult between the ages of about 20 years and about 50 years (e.g., about 20, 25, 30, 35, 40, 45 or 50 years old). In some embodiments, the subject is an elderly subject about 60 years old, about 70 years old, or older (e.g., about 60, 65, 70, 75, 80, 85 or 90 years old). In some embodiments, the subject has been exposed to influenza (e.g., C. trachomatis); the subject is infected with influenza (e.g., C. trachomatis); or subject is at risk of infection by influenza (e.g., C. trachomatis).
  • influenza e.g., C. trachomatis
  • influenza e.g., C. trachomatis
  • the subject is infected with influenza (e.g., C. trachomatis); or subject is at risk of infection by influenza (e.g., C. trachomatis).
  • the subject has been exposed to betacoronavirus (e.g., SARS- CoV-2); the subject is infected with betacoronavirus (e.g., SARS-CoV-2); or subject is at risk of infection by betacoronavirus (e.g., SARS-CoV-2).
  • betacoronavirus e.g., SARS- CoV-2
  • betacoronavirus e.g., SARS-CoV-2
  • subject is at risk of infection by betacoronavirus (e.g., SARS-CoV-2).
  • the subject has received at least one dose of an immunogenic composition against betacoronavirus (e.g., SARS-CoV-2), e.g., selected from any one of COMIRNATY®, the Pfizer-BioNTech COVID-19 vaccine, the Moderna mRNA-1273 COVID-19 vaccine, and the Janssen COVID-19 vaccine; the subject has received at least two doses of an immunogenic composition against betacoronavirus (e.g., SARS-CoV-2); the subject is receiving at least one dose of an immunogenic composition against betacoronavirus (e.g., SARS-CoV-2), e.g., selected from any one of COMIRNATY®, the Pfizer-BioNTech COVID-19 vaccine, the Moderna mRNA-1273 COVID-19 vaccine, and the Janssen COVID-19 vaccine; or the subject is being administered an immunogenic composition against betacoronavirus (e.g., SARS-CoV-2), e.g., selected from any one of COMIRNATY
  • nucleic acid vaccines described herein are chemically modified. In other embodiments the nucleic acid vaccines are unmodified. Yet other aspects provide compositions for and methods of vaccinating a subject comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a first virus antigenic polypeptide, wherein the RNA polynucleotide does not include a stabilization element, and wherein an adjuvant is not coformulated or co-administered with the vaccine.
  • the invention is a composition for or method of vaccinating a subject comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide wherein a dosage of between 10 ⁇ g/kg and 400 ⁇ g/kg of the nucleic acid vaccine is administered to the subject.
  • the dosage of the RNA polynucleotide is 1-5 ⁇ g, 5-10 ⁇ g, 10-15 ⁇ g, 15-20 ⁇ g, 10-25 ⁇ g, 20-25 ⁇ g, 20-50 ⁇ g, 30-50 ⁇ g, 40-50 ⁇ g, 40-60 ⁇ g, 60-80 ⁇ g, 60-100 ⁇ g, 50-100 ⁇ g, 80-120 ⁇ g, 40-120 ⁇ g, 40-150 ⁇ g, 50-150 ⁇ g, 50-200 ⁇ g, 80-200 ⁇ g, 100-200 ⁇ g, 120-250 ⁇ g, 150-250 ⁇ g, 180-280 ⁇ g, 200-300 ⁇ g, 50-300 ⁇ g, 80-300 ⁇ g, 100-300 ⁇ g, 40- 300 ⁇ g, 50-350 ⁇ g, 100-350 ⁇ g, 200-350 ⁇ g, 300-350 ⁇ g, 320-400 ⁇ g, 40-380 ⁇ g, 40-100 ⁇ g, 100-400
  • the nucleic acid vaccine is administered to the subject by intradermal or intramuscular injection. In some embodiments, the nucleic acid vaccine is administered to the subject on day zero. In some embodiments, a second dose of the nucleic acid vaccine is administered to the subject on day twenty-one. In some embodiments, a dosage of 25 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 100 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 50 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject.
  • a dosage of 75 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 150 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 400 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 200 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject.
  • the RNA polynucleotide accumulates at a 100-fold higher level in the local lymph node in comparison with the distal lymph node.
  • the nucleic acid vaccine is chemically modified and in other embodiments the nucleic acid vaccine is not chemically modified.
  • Aspects of the disclosure provide a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide, wherein the RNA polynucleotide does not include a stabilization element, and a pharmaceutically acceptable carrier or excipient, wherein an adjuvant is not included in the vaccine.
  • the stabilization element is a histone stem-loop.
  • the stabilization element is a nucleic acid sequence having increased GC content relative to wild type sequence.
  • nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide, wherein the RNA polynucleotide is present in the formulation for in vivo administration to a host, which confers an antibody titer superior to the criterion for seroprotection for the first antigen for an acceptable percentage of human subjects.
  • the antibody titer produced by the mRNA vaccines of the disclosure is a neutralizing antibody titer. In some embodiments the neutralizing antibody titer is greater than a protein vaccine.
  • the neutralizing antibody titer produced by the mRNA vaccines of the disclosure is greater than an adjuvanted protein vaccine.
  • the neutralizing antibody titer produced by the mRNA vaccines of the disclosure is 1,000-10,000, 1,200-10,000, 1,400-10,000, 1,500- 10,000, 1,000-5,000, 1,000-4,000, 1,800-10,000, 2000-10,000, 2,000-5,000, 2,000-3,000, 2,000-4,000, 3,000-5,000, 3,000-4,000, or 2,000-2,500.
  • a neutralization titer is typically expressed as the highest serum dilution required to achieve a 50% reduction in the number of plaques.
  • nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide, wherein the RNA polynucleotide is present in a formulation for in vivo administration to a host for eliciting a longer lasting high antibody titer than an antibody titer elicited by an mRNA vaccine having a stabilizing element or formulated with an adjuvant and encoding the first antigenic polypeptide.
  • the RNA polynucleotide is formulated to produce a neutralizing antibodies within one week of a single administration.
  • the adjuvant is selected from a cationic peptide and an immunostimulatory nucleic acid.
  • the cationic peptide is protamine.
  • Aspects provide nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame comprising at least one chemical modification or optionally no modified nucleotides, the open reading frame encoding a first antigenic polypeptide, wherein the RNA polynucleotide is present in the formulation for in vivo administration to a host such that the level of antigen expression in the host significantly exceeds a level of antigen expression produced by an mRNA vaccine having a stabilizing element or formulated with an adjuvant and encoding the first antigenic polypeptide.
  • nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame comprising at least one chemical modification or optionally no modified nucleotides, the open reading frame encoding a first antigenic polypeptide, wherein the vaccine has at least 10-fold less RNA polynucleotide than is required for an unmodified mRNA vaccine to produce an equivalent antibody titer.
  • the RNA polynucleotide is present in a dosage of 25-100 micrograms.
  • aspects of the disclosure also provide a unit of use vaccine, comprising between 10 ug and 400 ug of one or more RNA polynucleotides having an open reading frame comprising at least one chemical modification or optionally no modified nucleotides, the open reading frame encoding a first antigenic polypeptide, and a pharmaceutically acceptable carrier or excipient, formulated for delivery to a human subject.
  • the vaccine further comprises a cationic lipid nanoparticle.
  • aspects of the disclosure provide methods of creating, maintaining or restoring antigenic memory to a virus strain in an individual or population of individuals comprising administering to said individual or population an antigenic memory booster nucleic acid vaccine comprising (a) at least one RNA polynucleotide, said polynucleotide comprising at least one chemical modification or optionally no modified nucleotides and two or more codon-optimized open reading frames, said open reading frames encoding a set of reference antigenic polypeptides, and (b) optionally a pharmaceutically acceptable carrier or excipient.
  • the vaccine is administered to the individual via a route selected from the group consisting of intramuscular administration, intradermal administration, and subcutaneous administration.
  • the administering step comprises contacting a muscle tissue of the subject with a device suitable for injection of the composition. In some embodiments, the administering step comprises contacting a muscle tissue of the subject with a device suitable for injection of the composition in combination with electroporation.
  • methods of inducing an antigen specific immune response in a subject are provided. The method includes administering to the subject an influenza RNA composition in an amount effective to produce an antigen specific immune response.
  • an antigen specific immune response comprises a T cell response or a B cell response.
  • an antigen specific immune response comprises a T cell response and a B cell response.
  • a method of producing an antigen specific immune response involves a single administration of the vaccine.
  • a method further includes administering to the subject a booster dose of the vaccine.
  • a vaccine is administered to the subject by intradermal or intramuscular injection. Aspects of the disclosure provide methods of vaccinating a subject comprising administering to the subject a single dosage of between 25 ug/kg and 400 ug/kg of a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide in an effective amount to vaccinate the subject.
  • nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame comprising at least one chemical modification, the open reading frame encoding a first antigenic polypeptide, wherein the vaccine has at least 10-fold less RNA polynucleotide than is required for an unmodified mRNA vaccine to produce an equivalent antibody titer.
  • the RNA polynucleotide is present in a dosage of 25-100 micrograms.
  • nucleic acid vaccines comprising an LNP formulated RNA polynucleotide having an open reading frame comprising no nucleotide modifications (unmodified), the open reading frame encoding a first antigenic polypeptide, wherein the vaccine has at least 10-fold less RNA polynucleotide than is required for an unmodified mRNA vaccine not formulated in a LNP to produce an equivalent antibody titer.
  • the RNA polynucleotide is present in a dosage of 25-100 micrograms.
  • the invention encompasses a method of treating an elderly subject age 60 years or older comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a virus antigenic polypeptide in an effective amount to vaccinate the subject.
  • the invention encompasses a method of treating a young subject age 17 years or younger comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a virus antigenic polypeptide in an effective amount to vaccinate the subject.
  • the invention encompasses a method of treating an adult subject comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a virus antigenic polypeptide in an effective amount to vaccinate the subject.
  • the invention is a method of vaccinating a subject with a combination vaccine including at least two nucleic acid sequences encoding antigens wherein the dosage for the vaccine is a combined therapeutic dosage wherein the dosage of each individual nucleic acid encoding an antigen is a sub therapeutic dosage.
  • the combined dosage is 25 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject.
  • the combined dosage is 100 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In some embodiments the combined dosage is 50 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In some embodiments, the combined dosage is 75 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In some embodiments, the combined dosage is 150 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In some embodiments, the combined dosage is 400 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject.
  • vaccines of the disclosure produce prophylactically- and/or therapeutically efficacious levels, concentrations and/or titers of antigen-specific antibodies in the blood or serum of a vaccinated subject.
  • antibody titer refers to the amount of antigen-specific antibody produces in s subject, e.g., a human subject.
  • antibody titer is expressed as the inverse of the greatest dilution (in a serial dilution) that still gives a positive result.
  • antibody titer is determined or measured by enzyme-linked immunosorbent assay (ELISA).
  • antibody titer is determined or measured by neutralization assay, e.g., by microneutralization assay.
  • antibody titer measurement is expressed as a ratio, such as 1:40, 1:100, etc.
  • an efficacious vaccine produces an antibody titer of greater than 1:40, greater that 1:100, greater than 1:400, greater than 1:1000, greater than 1:2000, greater than 1:3000, greater than 1:4000, greater than 1:500, greater than 1:6000, greater than 1:7500, greater than 1:10000.
  • the antibody titer is produced or reached by 10 days following vaccination, by 20 days following vaccination, by 30 days following vaccination, by 40 days following vaccination, or by 50 or more days following vaccination.
  • the titer is produced or reached following a single dose of vaccine administered to the subject.
  • the titer is produced or reached following multiple doses, e.g., following a first and a second dose (e.g., a booster dose.)
  • antigen-specific antibodies are measured in units of ⁇ g/ml or are measured in units of IU/L (International Units per liter) or mIU/ml (milli International Units per ml).
  • an efficacious vaccine produces >0.5 ⁇ g/ml, >0.1 ⁇ g/ml, >0.2 ⁇ g/ml, >0.35 ⁇ g/ml, >0.5 ⁇ g/ml, >1 ⁇ g/ml, >2 ⁇ g/ml, >5 ⁇ g/ml or >10 ⁇ g/ml.
  • an efficacious vaccine produces >10 mIU/ml, >20 mIU/ml, >50 mIU/ml, >100 mIU/ml, >200 mIU/ml, >500 mIU/ml or >1000 mIU/ml.
  • the antibody level or concentration is produced or reached by 10 days following vaccination, by 20 days following vaccination, by 30 days following vaccination, by 40 days following vaccination, or by 50 or more days following vaccination.
  • the level or concentration is produced or reached following a single dose of vaccine administered to the subject.
  • the level or concentration is produced or reached following multiple doses, e.g., following a first and a second dose (e.g., a booster dose.)
  • antibody level or concentration is determined or measured by enzyme-linked immunosorbent assay (ELISA).
  • ELISA enzyme-linked immunosorbent assay
  • antibody level or concentration is determined or measured by neutralization assay, e.g., by microneutralization assay.
  • the disclosure provides a method comprising administering to a human subject a composition
  • a composition comprising: (a) a first messenger ribonucleic acid (mRNA) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid, and wherein the composition comprises 50 or 25 ⁇ g to 200 ⁇ g of
  • the composition comprises 25 ⁇ g of the mRNA in total. In some embodiments, the composition comprises 50 ⁇ g of the mRNA in total. In some embodiments, the composition comprises 100 ⁇ g of the mRNA in total. In some embodiments, the composition comprises 200 ⁇ g of the mRNA in total.
  • the ratio of the first:second:third:fourth mRNA is not 1:1:1:1. In preferred embodiments, the ratio of the first:second:third:fourth mRNA is 1:1: greater than 1: greater than 1, influenza A:A:B:B respectively. In preferred embodiments, the ratio of the first:second:third:fourth mRNA is 1:1:2:2, influenza A:A:B:B respectively.
  • each mRNA comprises a 5’ cap analog.
  • the 5’ cap analog is a 5’ 7mG(5’)ppp(5’)NlmpNp cap.
  • each mRNA comprises a chemical modification.
  • the chemical modification is 1-methylpseudouridine.
  • the lipid nanoparticle comprises 40-50 mol% ionizable amino lipid, 35-45 mol% sterol, 10-15 mol% neutral lipid, and 2-4 mol% PEG-modified lipid.
  • the lipid nanoparticle comprises 45 mol%, 46 mol%, 47 mol%, 48 mol%, 49 mol%, or 50 mol% ionizable amino lipid.
  • the sterol is cholesterol.
  • the neutral lipid is 1,2 distearoyl-sn-glycero-3-phosphocholine (DSPC).
  • the PEG-modified lipid is 1,2 dimyristoyl-sn-glycerol, methoxypolyethyleneglycol (PEG2000 DMG).
  • the composition further comprises Tris buffer, sucrose, and sodium acetate.
  • the composition comprises 10 mM – 30 mM Tris buffer, 75 mg/mL – 95 mg/mL sucrose, and 5 mM – 15 mM sodium acetate, optionally wherein the composition has a pH of 6-8. In some embodiments, the composition comprises 20 mM Tris buffer, 87 mg/mL sucrose, and 10.7 mM sodium acetate, optionally wherein the composition has a pH of 7.5. In some embodiments, the composition comprises 0.5 mg/mL of the mRNA. In some embodiments, the composition is administered intramuscularly, optionally into a deltoid region of the human subject. In some embodiments, the human subject is 18 to 49 years of age.
  • the human subject is at least 50 years of age. In some embodiments, the human subject is 50-64 years of age. In some embodiments, the human subject is at least 65 years of age. In some embodiments, the human subject is seropositive for at least one of the HA antigens. In some embodiments, the human subject is seropositive for all of the HA antigens. In some embodiments, the subject is seronegative for all of the HA antigens. In some embodiments, the HA antigens are recommended by or selected according to standardized criteria used by World Health Organization’s Global Influenza Surveillance and Response System (GISRS).
  • GISRS Global Influenza Surveillance and Response System
  • the HA antigen are selected using a hemagglutinin inhibition (HAI) assay to identify circulating influenza viruses that are antigenically similar to influenza viruses from a previous season’s vaccine, optionally wherein influenza viruses are considered to be antigenically similar if their HAI titers differ by two dilutions or less.
  • the first mRNA encodes an influenza A HA antigen of the H1 subtype
  • the second mRNA encodes an influenza A HA antigen of the H3 subtype
  • the third mRNA encodes an influenza B HA antigen of the B/Yamagata lineage
  • the fourth mRNA encodes an influenza B HA antigen of the B/Victoria lineage.
  • the mRNA vaccine is administered in an amount effective to induce a neutralizing antibody response against influenza A H1N1, influenza A H3N2, influenza B/Yamagata, and influenza B/Victoria. In some embodiments, the mRNA vaccine is administered in an amount effective to induce a T cell response against influenza A H1N1, influenza A H3N2, influenza B/Yamagata, and influenza B/Victoria.
  • the disclosure in another aspect, provides a composition
  • a composition comprising: (a) a first messenger ribonucleic acid (mRNA) comprising an open reading frame (ORF) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid; wherein the ratio of the first:second:third:fourth m
  • the disclosure in another aspect, provides a composition
  • a composition comprising: (a) a first messenger ribonucleic acid (mRNA) comprising an open reading frame (ORF) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid; wherein the ratio of the first:second:third:fourth m
  • compositions comprising: (a) a first messenger ribonucleic acid (mRNA) comprising an open reading frame (ORF) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid; wherein the ratio of the first:second:third:fourth mRNA is 1:1:greater than
  • the disclosure in another aspect, provides a composition
  • a composition comprising: (a) a first messenger ribonucleic acid (mRNA) comprising an open reading frame (ORF) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid; wherein the ratio of the first:second:third:fourth m
  • Another aspect of the disclosure includes a method for vaccinating a human subject, comprising administering an mRNA vaccine comprising mRNA encoding at least 4 influenza antigens, wherein the influenza antigens comprise at least 2 hemagglutinin (HA) A antigens, each of a different subtype and at least 2 HA B antigens, each of a different lineage, in an effective amount to produce an antigen specific immune response in the subject.
  • the influenza antigens are encoded by one to four mRNAs.
  • the mRNA comprises a single mRNA encoding the at least 4 influenza antigens.
  • the mRNA comprises four mRNA each comprising a single open reading frame (ORF) encoding one of the 4 influenza antigens.
  • the 4 influenza antigens comprise an influenza A HA antigen of the H1 subtype, an influenza A HA antigen of the H3 subtype, an influenza B HA antigen of the B/Yamagata lineage, and an influenza B HA antigen of the B/Victoria lineage.
  • compositions comprising an mRNA vaccine comprising mRNA encoding at least 4 influenza antigens, wherein the influenza antigens comprise at least 2 hemagglutinin (HA) A antigens, each of a different subtype and at least 2 HA B antigens, each of a different lineage, wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid.
  • the influenza antigens are encoded by one to four mRNAs.
  • the mRNA comprises a single mRNA encoding the at least 4 influenza antigens. In some embodiments, the mRNA comprises four mRNA each comprising a single open reading frame (ORF) encoding one of the 4 influenza antigens. In some embodiments, the 4 influenza antigens comprise an influenza A HA antigen of the H1 subtype, an influenza A HA antigen of the H3 subtype, an influenza B HA antigen of the B/Yamagata lineage, and an influenza B HA antigen of the B/Victoria lineage. In some embodiments, the 4 mRNA are present in the composition in 1:1:greater than 1:greater than 1 ratio, influenza A:A:B:B strains, respectively.
  • the composition comprises 25 ⁇ g to 200 ⁇ g of the mRNA in total.
  • the percentage of subjects with seroconversion with respect to one of the four influenza antigens after a single dose at Day 29 is at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with seroconversion with respect to one of the four influenza antigens after a single dose at Day 29 is 100%.
  • the percentage of subjects with seroconversion with respect to two of the four influenza antigens after a single dose at Day 29 is at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with seroconversion with respect to two of the four influenza antigens after a single dose at Day 29 is 100%. In some embodiments, the percentage of subjects with seroconversion with respect to three of the four influenza antigens after a single dose at Day 29 is at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95% or 100%.
  • the percentage of subjects with seroconversion with respect to three of the four influenza antigens after a single dose at Day 29 is 100%. In some embodiments, the percentage of subjects with seroconversion with respect to all four of the influenza antigens after a single dose at Day 29 is at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with seroconversion with respect to all four of the influenza antigens after a single dose at Day 29 is 100%. In some embodiments, the percentage of subjects with at least a 2-fold rise in geometric mean fold rise (GMFR) after a single dose at Day 29 is at least 80%, at least 90%, at least 95% or 100%.
  • GMFR geometric mean fold rise
  • the percentage of subjects with a 2-fold rise in GMFR after a single dose at Day 29 is 100%. In some embodiments, the percentage of subjects with a 4-fold rise in GMFR after a single dose at Day 29 is at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with a 4-fold rise in GMFR after a single dose at Day 29 is 100%.
  • the GMFR comprises the H1N1 HAI titer GMFR. In some embodiments, the GMFR comprises the H3N2 HAI titer GMFR. In some embodiments, the GMFR comprises the B/Yamagata HAI titer GMFR.
  • the GMFR comprises the B/Victoria HAI titer GMFR.
  • the serum antibody titers are increased 4-fold over baseline (Day 0) at Day 29 and Day 57 after a single dose. In some embodiments, the serum antibody titers are decreased at Day 181 over Day 29 titers after a single dose. In some embodiments, the microneutralization titers are increased 4-fold over baseline (Day 0) at Day 29 and/or Day 57 after a single dose. In some embodiments, the microneutralization titers are decreased at Day 181 over Day 29 titers after a single dose.
  • the composition comprises an approximately 25 ⁇ g to 250 ⁇ g dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage).
  • the composition comprises equal amounts of each of the mRNA encoding each of the four HA proteins (e.g., the mRNA are present in the composition at a 1:1:greater than 1: greater than 1 ratio, influenza A:A:B:B strains, respectively).
  • a composition comprises an approximately 25 ⁇ g dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). In some embodiments, a composition comprises an approximately 50 ⁇ g dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage).
  • a composition comprises an approximately 100 ⁇ g dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). In some embodiments, a composition comprises an approximately 150 ⁇ g dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage).
  • a composition comprises an approximately 200 ⁇ g dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). In some embodiments, a composition comprises an approximately 250 ⁇ g dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage).
  • a composition may further comprise a buffer, for example a Tris buffer.
  • a composition may comprise 10 mM – 30 mM, 10 mM – 20 mM, or 20 mM – 30 mM Tris buffer.
  • a composition comprises 10, 15, 20, 25, or 30 mM Tris buffer.
  • a composition comprises 20 mM Tris buffer.
  • mRNA of a composition is formulated at a concentration of 0.1 – 1 mg/mL.
  • mRNA of a composition is formulated at a concentration of 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, or 1 mg/mL.
  • mRNA of a composition is formulated at a concentration of 0.5 mg/mL.
  • a composition comprises sucrose.
  • a composition may comprise 75 mg/mL – 95 mg/mL, 75 mg/mL – 85 mg/mL, or 85 mg/mL – 95 mg/mL sucrose.
  • a composition comprises 75, 80, 85, 86, 87, 88, 89, 90, or 95 mg/mL sucrose.
  • a composition comprises 87 mg/mL sucrose.
  • a composition does not include sodium acetate.
  • a composition may have a pH value of 6-8.
  • a composition has a pH value of 6, 6.5, 7, 7.5, or 8. In some embodiments, a composition has a pH value of 7.5.
  • the composition further comprises a mixture of lipids.
  • the mixture of lipids typically forms a lipid nanoparticle.
  • the mRNA described herein, in some embodiments, is formulated with a lipid nanoparticle (e.g., for administration to a subject).
  • the lipid mixture, and thus the lipid nanoparticle comprises: an ionizable amino lipid; a neutral lipid; a sterol; and a PEG-modified lipid.
  • the lipid mixture/lipid nanoparticle may comprise: 20-60 mol% ionizable amino lipid; 5-25 mol% neutral lipid; 25-55 mol% sterol; and 0.5-15 mol% PEG-modified lipid.
  • the lipid nanoparticle comprises: 20-60 mol% ionizable amino lipid; 5-25 mol% neutral lipid; 25-55 mol% sterol; and 0.5-15 mol% PEG-modified lipid.
  • the lipid nanoparticle comprises: 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid.
  • the lipid nanoparticle may comprise: (a) 47 mol% ionizable amino lipid; 11.5 mol% neutral lipid; 38.5 mol% sterol; and 3.0 mol% PEG-modified lipid; (b) 48 mol% ionizable amino lipid; 11 mol% neutral lipid; 38.5 mol% sterol; and 2.5 mol% PEG-modified lipid; (c) 49 mol% ionizable amino lipid; 10.5 mol% neutral lipid; 38.5 mol% sterol; and 2.0 mol% PEG-modified lipid; (d) 50 mol% ionizable amino lipid; 10 mol% neutral lipid; 38.5 mol% sterol; and 1.5 mol% PEG-modified lipid; or (e) 51 mol% ionizable amino lipid; 9.5 mol% neutral lipid; 38.5 mol% sterol; and 1.0 mol% PEG-modified lipid.
  • the lipid mixture comprises 20-55 mol%, 20-50 mol%, 20-45 mol%, 20-40 mol%, 25-60 mol%, 25-55 mol%, 25- 50 mol%, 25-45 mol%, 25-40 mol%, 30-60 mol%, 30-55 mol%, 30-50 mol%, 30-45 mol%, 30-40 mol%, 35-60 mol%, 35-55 mol%, 35-50 mol%, 35-45 mol%, 35-40 mol%, 40-60 mol%, 40-55 mol%, 40-50 mol%, 40-45 mol%, 50-60 mol%, 50-55 mol%, or 55-60 mol% ionizable amino lipid.
  • the lipid mixture and thus the lipid nanoparticle, comprises 5-20 mol%, 5-15 mol%, 5-10 mol%, 10-25 mol%, 10-20 mol%, 10-15 mol%, 15-25 mol%, 15-20 mol%, or 20-25 mol% neutral lipid.
  • the lipid mixture comprises 25-50 mol%, 25-45 mol%, 25-40 mol%, 25-35 mol%, 25-30 mol%, 30- 55 mol%, 30-50 mol%, 30-45 mol%, 30-40 mol%, 30-35 mol%, 35-55 mol%, 35-50 mol%, 35-45 mol%, 35-40 mol%, 40-55 mol%, 40-50 mol%, 40-45 mol%, 45-55 mol%, 45-50 mol%, or 50-55 mol% sterol.
  • the lipid mixture and thus the lipid nanoparticle, comprises 0.5-10 mol%, 0.5-5 mol%, 0.5-1 mol%, 1-15%, 1-10 mol%, 1-5 mol%, 1.5-15%, 1.5-10 mol%, 1.5-5 mol%, 2-15%, 2-10 mol%, 2-5 mol%, 2.5-15%, 2.5-10 mol%, 2.5-5 mol%, 3-15%, 3-10 mol%, or 3-5 mol%, PEG-modified lipid.
  • the lipid mixture comprises: 50 mol% ionizable amino lipid; 10 mol% neutral lipid; 38.5 mol% sterol; and 1.5 mol% PEG- modified lipid.
  • the ionizable amino lipid is heptadecan-9-yl 8 ((2 hydroxyethyl)(6 oxo 6-(undecyloxy)hexyl)amino)octanoate.
  • the neutral lipid is 1,2 distearoyl sn glycero-3 phosphocholine (DSPC).
  • the sterol is cholesterol.
  • the PEG-modified lipid is 1- monomethoxypolyethyleneglycol-2,3-dimyristylglycerol with polyethylene glycol of average molecular weight 2000 (PEG2000 DMG).
  • a composition may further include a pharmaceutically-acceptable excipient, inert or active.
  • a pharmaceutically acceptable excipient after administered to a subject, does not cause undesirable physiological effects.
  • the excipient in the pharmaceutical composition must be “acceptable” also in the sense that it is compatible with mRNA and can be capable of stabilizing it.
  • One or more excipients e.g., solubilizing agents
  • examples of a pharmaceutically acceptable excipients include, but are not limited to, biocompatible vehicles (e.g., LNPs), carriers, adjuvants, additives, and diluents to achieve a composition usable as a dosage form.
  • an mRNA is formulated using one or more excipients to: (1) increase stability; (2) increase cell transfection; (3) permit the sustained or delayed release (e.g., from a depot formulation); (4) alter the biodistribution (e.g., target to specific tissues or cell types); (5) increase the translation of encoded protein in vivo; and/or (6) alter the release profile of encoded protein (antigen) in vivo.
  • excipients can include, without limitation, lipidoids, liposomes, lipid nanoparticles, polymers, lipoplexes, core-shell nanoparticles, peptides, proteins, cells transfected with the RNA (e.g., for transplantation into a subject), hyaluronidase, nanoparticle mimics and combinations thereof.
  • a composition comprising mRNA does not include an adjuvant (the composition is adjuvant-free).
  • compositions may be sterile, pyrogen-free or both sterile and pyrogen-free.
  • General considerations in the formulation and/or manufacture of pharmaceutical agents, such as compositions, may be found, for example, in Remington: The Science and Practice of Pharmacy 21st ed., Lippincott Williams & Wilkins, 2005.
  • Formulations of the compositions described herein may be prepared by any method known or hereafter developed in the art of pharmacology. In general, such preparatory methods include the step of bringing the mRNA into association with an excipient (e.g., a mixture of lipids and/or a lipid nanoparticle), and then, if necessary and/or desirable, dividing, shaping and/or packaging the product into a desired single- or multi-dose unit.
  • an excipient e.g., a mixture of lipids and/or a lipid nanoparticle
  • Relative amounts of the mRNA, the pharmaceutically- acceptable excipient, and/or any additional ingredients in a composition in accordance with the disclosure may vary, depending upon the identity, size, and/or condition of the subject treated and further depending upon the route by which the composition is to be administered.
  • the present disclosure demonstrates that an improved immune response can be produced by increasing the relative amount of RNA encoding an antigen of a type B influenza virus as compared to RNA encoding an influenza type A virus (e.g., an immune response that comprises higher neutralization titers against an influenza type B virus (e.g., higher neutralization titers as compared to a composition comprising equal amounts of RNA encoding an influenza type A antigen and RNA encoding an influenza type B antigen (e.g., as determined by a pseudovirus neutralization assay described herein))).
  • an immune response that comprises higher neutralization titers against an influenza type B virus (e.g., higher neutralization titers as compared to a composition comprising equal amounts of RNA encoding an influenza type A antigen and RNA encoding an influenza type B antigen (e.g., as determined by a pseudovirus neutralization assay described herein)
  • RNA that can produce strong immune responses against both types of influenza viruses (e.g., neutralizing titers and/or seroconversion rates that are at clinically relevalent levels (e.g., (i) neutralizing titers that are comparable or superior to those previously shown to prevent influenza symptoms, and/or (ii) neutralizing titers and/or seroconversion rates that are comparable or superior to those induced by a relevant comparator (e.g., a commercially approved influenza vaccine or an influenza RNA vaccine))).
  • a relevant comparator e.g., a commercially approved influenza vaccine or an influenza RNA vaccine
  • a composition comprising a greater amount of RNA encoding influenza B antigens as compared to RNA encoding influenza A antigens produces an immune response against each of an influenza type B virus and influenza type A virus that is comparable or superior to that induced by a non-RNA influenza vaccine (e.g., an approved vaccine) and/or an RNA vaccine comprising equal amounts of RNA encoding influenza A antigens and RNA encoding influenza B antigens.
  • a non-RNA influenza vaccine e.g., an approved vaccine
  • an RNA vaccine comprising equal amounts of RNA encoding influenza A antigens and RNA encoding influenza B antigens.
  • the concentration of RNA in a pharmaceutical RNA preparation is about 0.1-0.2 mg/ml. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.1 mg/ml.
  • the concentration of RNA in a pharmaceutical RNA preparation is about 0.12 mg/ml. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.14 mg/ml. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.16 mg/ml. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.18 mg/ml. In some embodiments about 30 ug of RNA is administered by administering about 200 uL of RNA preparation. In some embodiments, the RNA in a pharmaceutical RNA preparation is diluted prior to administration (e.g., diluted to a concentration of about 0.05 mg/ml).
  • administration volumes are between about 200 ⁇ l and about 300 ⁇ l.
  • the RNA in a pharmaceutical RNA preparation is formulated in about 10 mM Tris buffer, and about 10% sucrose.
  • a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.1 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose.
  • a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.12 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose.
  • a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.14 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose. In some embodiments, a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.16 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose. In some embodiments, a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.18 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose. Such a formulation can be diluted as needed prior to administration to administer different doses of RNA while keeping total injection volume relatively constant.
  • a dose of RNA of about 10 ⁇ g can be administered by diluting such a pharmaceutical RNA preparation by about 1:1 and administering about 200 ⁇ l of diluted pharmaceutical RNA preparation.
  • a vaccine is formulated in a vial (e.g., a glass vial).
  • a glass vial is sealed with a bromobutyl elastomeric stopper and an aluminum seal with flip-off plastic cap.
  • a composition comprises an RNA encoding an antigen (e.g., an HA protein) of an influenza virus that is recommended by a relevant health authority for inclusion in a seasonally-adapted vaccine (e.g., a cell-based, recombinant, or live attenuated virus).
  • a composition comprises a plurality of RNAs, encoding antigens (e.g., HA proteins) of each influenza virus recommended by a relevant health authority for inclusion in a seasonally-adapted vaccine (e.g., a cell-based, recombinant, or live attenuated virus).
  • the influenza virus is an influenza A, influenza B, or influenza C virus.
  • influenza A virus is an H1N1, H1N2, H2N2, H3N1, H3N2, H3N8, H5N1, H5N2, H5N3, H5N8, H5N9, H7N1, H7N2, H7N3, H7N4, H7N7, H7N9, H9N2, H10N7, or H10N8 virus.
  • influenza A virus is an H1N1, H3N2, H5N1, or H5N8 virus.
  • the influenza A virus is an H1N1 virus (e.g., A/Wisconsin/588/2019 or A/Sydney/5/2021).
  • the influenza A virus is an H3N2 virus.
  • the H3N2 virus is A/Cambodia/e0826360/2020 or A/Darwin/6/2021.
  • influenza B virus is of a B/Yamagata or B/Victoria lineage.
  • the B/Victoria lineage influenza virus is B/Washington/02/2019.
  • the B/Victoria lineage virus is B/Austria/1359417/2021.
  • the B/Yamagata lineage influenza virus is B/Phuket/3073/2013.
  • a composition described herein comprises a multivalent influenza vaccine.
  • a multivalent influenza vaccine comprises 2 to 50 RNA distinct molecules (e.g., 2 to 40, 2 to 30, or 2 to 20 RNA molecules), each of which, in some embodiments, may encode a different antigenic polypeptide (or a different version of a particular antigenic polypeptide) associated with influenza, e.g., as described in Arevalo, Stephan P., et al. "A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes.” Science 378.6622 (2022): 899-904.
  • a composition described herein comprises a trivalent influenza vaccine.
  • a trivalent influenza vaccine comprises RNAs encoding an antigenic polypeptide associated with two type A viruses and one type B virus that are predicted to be prevalent in a relevant jurisdiction.
  • the trivalent composition includes a modRNA suspension for injection, e.g., 0.09 mg/mL, having a ratio of 1:1:4 of influenza HA A:A:B strain, respectively.
  • the trivalent composition comprises 0.015 mg/ml modRNA encoding HA from an influenza A strain, 0.015 mg/ml modRNA encoding HA from an influenza A strain, and 0.060 mg/ml of an influenza B strain.
  • the composition may further comprise a cationic lipid, a pegylated lipid, phospholipid, and sterol, sucrose, tromethamine, and Tris-HCl.
  • a trivalent modRNA HA B/Austria, A/Wisconsin, A/Darwin
  • the dose volume and immunization route was 50 ul/IM, administered on day 0 and 28. Bleed occurred on day 21 and 42. See Example 9.
  • a composition described herein comprises a tetravalent influenza vaccine.
  • a tetravalent influenza vaccine comprises RNAs encoding an antigenic polypeptide associated with two type A viruses and two type B viruses that are predicted to be prevalent in a relevant jurisdiction.
  • a composition described herein comprises an octavalent influenza vaccine.
  • an octavalent influenza vaccine comprises RNAs encoding two antigenic polypeptides associated with each of two type A viruses and two type B viruses that are predicted to be prevalent in a relevant jurisdiction (e.g., an HA protein and an NA protein associated with each virus, or immunogenic fragments thereof).
  • a composition disclosed herein comprises a tetravalent influenza vaccine comprising an RNA comprising a nucleotide sequence encoding an HA protein associated with an H1N1 virus (e.g., A/Wisconsin/588/2019), an RNA comprising a nucleotide sequence encoding an HA protein associated with an H3N2 virus (e.g., A/Cambodia/e0826360/2020), an RNA comprising a nucleotide sequence encoding an HA protein associated with a B/Victoria lineage influenza virus (e.g., B/Washington/02/2019), and an HA protein associated with a B/Yamagata lineage influenza virus (e.g., B/Phuket/3073/2013).
  • H1N1 virus e.g., A/Wisconsin/588/2019
  • an RNA comprising a nucleotide sequence encoding an HA protein associated with an H3N2 virus e.g.
  • the tetravalent influenza RNA composition comprises 60 ⁇ g of total RNA (e.g., 5 ⁇ g of an RNA encoding an HA protein of an influenza A strain, 5 ⁇ g of an RNA encoding an HA protein of an influenza A strain, 25 ⁇ g of an RNA encoding an HA protein of an influenza B strain, and 25 ⁇ g of an RNA encoding an HA protein of an influenza B strain).
  • total RNA e.g., 5 ⁇ g of an RNA encoding an HA protein of an influenza A strain, 5 ⁇ g of an RNA encoding an HA protein of an influenza A strain, 25 ⁇ g of an RNA encoding an HA protein of an influenza B strain, and 25 ⁇ g of an RNA encoding an HA protein of an influenza B strain.
  • the tetravalent influenza RNA composition comprises 60 ⁇ g of total RNA (e.g., 5 ⁇ g of an RNA encoding an HA protein of an H1N1 influenza strain, 5 ⁇ g of an RNA encoding an HA protein of an H3N2 influenza strain, 25 ⁇ g of an RNA encoding an HA protein of a B/Victoria influenza lineage, and 25 ⁇ g of an RNA encoding an HA protein of a B/Yamagata influenza lineage).
  • total RNA e.g., 5 ⁇ g of an RNA encoding an HA protein of an H1N1 influenza strain, 5 ⁇ g of an RNA encoding an HA protein of an H3N2 influenza strain, 25 ⁇ g of an RNA encoding an HA protein of a B/Victoria influenza lineage, and 25 ⁇ g of an RNA encoding an HA protein of a B/Yamagata influenza lineage.
  • the tetravalent influenza RNA composition described herein comprises 45 ⁇ g of total RNA (e.g., 11.25 ⁇ g of an RNA encoding an HA protein of a first influenza A strain, 11.25 ⁇ g of an RNA encoding an HA protein of a second influenza A strain, 11.25 ⁇ g of an RNA encoding an HA protein of an influenza B strain, and 11.25 ⁇ g of an RNA encoding an HA protein of a B/Yamagata influenza lineage).
  • total RNA e.g., 11.25 ⁇ g of an RNA encoding an HA protein of a first influenza A strain, 11.25 ⁇ g of an RNA encoding an HA protein of a second influenza A strain, 11.25 ⁇ g of an RNA encoding an HA protein of an influenza B strain, and 11.25 ⁇ g of an RNA encoding an HA protein of a B/Yamagata influenza lineage.
  • the tetravalent influenza RNA composition described herein comprises 45 ⁇ g of total RNA (e.g., 11.25 ⁇ g of an RNA encoding an HA protein of an H1N1 influenza strain, 11.25 ⁇ g of an RNA encoding an HA protein of an H3N2 influenza strain, 11.25 ⁇ g of an RNA encoding an HA protein of a B/Victoria influenza lineage, and 11.25 ⁇ g of an RNA encoding an HA protein of a B/Yamagata influenza lineage).
  • total RNA e.g., 11.25 ⁇ g of an RNA encoding an HA protein of an H1N1 influenza strain, 11.25 ⁇ g of an RNA encoding an HA protein of an H3N2 influenza strain, 11.25 ⁇ g of an RNA encoding an HA protein of a B/Victoria influenza lineage, and 11.25 ⁇ g of an RNA encoding an HA protein of a B/Yamagat
  • the tetravalent influenza RNA composition comprises 30 ⁇ g of total RNA (e.g., 2.5 ⁇ g of an RNA encoding an HA protein of an H1N1 influenza strain, 2.5 ⁇ g of an RNA encoding an HA protein of an H3N2 influenza strain, 12.5 ⁇ g of an RNA encoding an HA protein of a B/Victoria influenza lineage, and 12.5 ⁇ g of an RNA encoding an HA protein of a B/Yamagata influenza lineage).
  • a composition comprises a tetravalent influenza vaccine comprises RNA encoding an antigenic polypeptide associated with two type A viruses and two type B viruses that are predicted to be prevalent in a relevant jurisdiction.
  • a tetravalent influenza vaccine comprises RNA encoding an antigenic polypeptide associated with an H1N1 influenza virus, RNA encoding an antigenic polypeptide associated with an H3N2 influenza virus, RNA encoding an antigenic polypeptide associated with a Victoria lineage influenza virus, and RNA encoding an antigenic polypeptide associated with a Yamagata lineage influenza virus.
  • the tetravalent influenza vaccine comprises RNA associated with influenza types that are predicted to be prevalent in a relevant jurisdiction (e.g., HA polypeptides associated with the H1N1, H3N2, B/Victoria, and B/Yamagata influenza viruses that are predicted to be prevalent in a relevant jurisdiction).
  • each of the RNAs in a composition disclosed herein encodes an antigenic polypeptide associated with an infectious agent that is predicted to be prevalent in a relevant jurisdiction. Such compositions can reduce the number of vaccinations needed.
  • a nucleic acid containing particle comprises two or more RNA molecules, each comprising a nucleotide sequence encoding an antigen (e.g., an HA protein) associated with a different influenza virus.
  • a nucleic acid containing particle comprises three or more RNA molecules, each comprising a nucleotide sequence encoding an antigen (e.g., an HA protein) associated with a different influenza virus.
  • a nucleic acid containing particle comprises four or more RNA molecules, each comprising a nucleotide sequence encoding an antigen (e.g., an HA protein) associated with a different influenza virus.
  • a nucleic acid containing particle comprises an RNA molecule comprising a nucleotide sequence encoding an antigenic polypeptide associated with an H1N1 influenza virus, an RNA molecule comprising a nucleotide sequence encoding an antigenic polypeptide associated with an H3N2 influenza virus, an RNA molecule comprising a nucleotide sequence encoding an antigenic polypeptide associated with a B/Victoria lineage influenza virus, and an RNA molecule comprising a nucleotide sequence encoding an antigenic polypeptide associated with a B/Yamagata influenza virus.
  • each RNA in a composition comprising a nucleotide sequence encoding an antigenic polypeptide associated with an influenza virus is formulated in the same nucleic acid containing particle. In some embodiments, each RNA in a composition comprising a nucleotide sequence encoding an antigenic polypeptide associated with an influenza virus is formulated in separate nucleic acid containing particles. In some embodiments, a nucleic acid containing particle (e.g., in some embodiments an LNP as described herein) comprising two or more RNA molecules, comprises each RNA molecule in the same amount (i.e., at a 1:1 ratio).
  • a nucleic acid containing particle (e.g., in some embodiments an LNP as described herein) comprising two or more RNA molecules, comprises a different amount of each RNA molecule.
  • a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, where the first RNA molecule is present in an amount that is 0.01 to 100 times that of the second RNA molecule (e.g., wherein the amount of the first RNA molecule is 0.01 to 50, 0.01 to 4, 0.01 to 30, 0.01 to 25, 0.01 to 20, 0.01 to 15, 0.01 to 10, 0.01 to 9, 0.01 to 8, 0.01 to 7, 0.01 to 6, 0.01 to 5, 0.01 to 4, 0.01 to 3, 0.01 to 2, 0.01 to 1.5, 1 to 50, 1 to 4, 1 to 30, 1 to 25, 1 to 20, 1 to 15, 1 to 10, 1 to 9, 1 to 8, 1 to 7, 1 to 6, 1 to 5, 1 to 4, 1 to 3, 1 to 2, or 1 to 1.5 times higher than the second RNA
  • a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 1 to 10 times that of the second RNA molecule. In some embodiments, a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 1 to 5 times that of the second RNA molecule. In some embodiments, a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 1 to 3 times that of the second RNA molecule.
  • a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 2 times that of the second RNA molecule. In some embodiments, a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 3 times that of the second RNA molecule. In some embodiments, a nucleic acid containing particle (e.g., in some embodiments an LNP as described herein) comprising three RNA molecules, comprises each RNA molecule in the same amount (i.e., at a 1:1:1 ratio).
  • a nucleic acid containing particle (e.g., in some embodiments an LNP as described herein) comprising three RNA molecules, comprises a different amount of each RNA molecule.
  • the ratio of first RNA molecule: second RNA molecule: third RNA molecule is 1: 0.01-100: 0.01-100 (e.g., 1: 0.01-50: 0.01-50; 1: 0.01-40: 0.01-40; 1: 0.01-30: 0.01-25; 1: 0.01-25: 0.01-25; 1: 0.01-20: 0.01-20; 1: 0.01-15: 0.01-15; 1: 0.01-10: 0.01-9; 1: 0.01-9: 0.01-9; 1: 0.01-8: 0.01-8; 1: 0.01-7: 0.01-7; 1: 0.01-6: 0.01-6; 1: 0.01-5: 0.01-5; 1: 0.01-4: 0.01-4; 1: 0.01-3: 0.01-3; 1: 0.01-2: 0.01-2; or 1: 0.01-1.5:
  • the ratio of first RNA molecule: second RNA molecule: third RNA molecule is 1:1:3. In some embodiments, the ratio of first RNA molecule: second RNA molecule: third RNA molecule is 1:3:3.
  • dose refers in general to a "dose amount" which relates to the amount of RNA administered per administration, i.e., per dosing. In some embodiments, administration of an immunogenic composition or vaccine of the present disclosure may be performed by single administration or boosted by multiple administrations.
  • a regimen described herein includes at least one dose. In some embodiments, a regimen includes a first dose and at least one subsequent dose. In some embodiments, the first dose is the same amount as at least one subsequent dose.
  • the first dose is the same amount as all subsequent doses. In some embodiments, the first dose is a different amount as at least one subsequent dose. In some embodiments, the first dose is a different amount than all subsequent doses. In some embodiments, a regimen comprises two doses. In some embodiments, a provided regimen consists of two doses. In some em bodiments, a regimen comprises three doses. In one embodiment, the disclosure envisions administration of a single dose. In one embodiment, the disclosure envisions administration of a priming dose followed by one or more booster doses. The booster dose or the first booster dose may be administered 7 to 28 days or 14 to 24 days following administration of the priming dose.
  • a first booster dose may be administered 1 week to 3 months (e.g., 1 week, 2 weeks, 3 weeks, 4 weeks, 5 weeks, 6 weeks, 7 weeks, 8 weeks, 9 weeks, 10 weeks, 11 weeks, 12 weeks) following administration of a priming dose.
  • a subsequent booster dose may be administered at least 1 week or longer, including, e.g., at least 2 weeks, at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, at least 7 weeks, at least 8 weeks, at least 9 weeks, at least 10 weeks, at least 11 weeks, at least 12 weeks, or longer, following a preceding booster dose.
  • subsequent booster doses may be administered about 5- 9 weeks or 6-8 weeks apart.
  • At least one subsequent booster dose may be administered at least 3 months or longer, including, e.g., at least 4 months, at least 5 months, at least 6 months, at least 7 months, at least 8 months, at least 9 months, at least 10 months, or longer, following a preceding dose.
  • a dose comprises a total amount of RNA of 0.1 ⁇ g to 300 ⁇ g, 0.5 ⁇ g to 200 ⁇ g, or 1 ⁇ g to 100 ⁇ g, such as about 1 ⁇ g, about 2 ⁇ g, about 3 ⁇ g, about 10 ⁇ g, about 15 ⁇ g, about 20 ⁇ g, about 25 ⁇ g, about 30 ⁇ g, about 35 ⁇ g, about 40 ⁇ g, about 45 ⁇ g, about 50 ⁇ g, about 55 ⁇ g, about 60 ⁇ g, about 65 ⁇ g, about 70 ⁇ g, about 75 ⁇ g, about 80 ⁇ g, about 85 ⁇ g, about 90 ⁇ g, about 95 ⁇ g, or about 100 ⁇ g.
  • a dose comprises a total amount of RNA (e.g., modRNA) of up to about 100 ⁇ g.
  • a dose comprises 0.1 ⁇ g to 100 ⁇ g of one or more first RNAs and 0.1 ⁇ g to 100 ⁇ g of one or more second RNAs, wherein the one or more first RNAs each comprise a nucleotide sequence encoding an antigenic polypeptide associated with a first infectious agent (e.g., a coronavirus), and the one or more second RNAs each comprise a nucleotide sequence encoding an antigenic polypeptide associated with a second infectious agent (e.g., influenza).
  • a first infectious agent e.g., a coronavirus
  • influenza e.g., influenza
  • a dose comprises 3 to 60 ⁇ g of one or more first RNAs and 3 to 90 ⁇ g of one or more second RNAs. In some embodiments, a dose comprises 3 to 60 ⁇ g of one or more first RNAs and 3 to 90 ⁇ g of one or more second RNAs, wherein the dose comprises up to 100 ⁇ g of RNA total. In some embodiments, a dose comprises 3 to 30 ⁇ g of one or more first RNAs and 3 to 60 ⁇ g of one or more second RNAs, wherein the dose comprises up to 100 ⁇ g of RNA total. In some embodiments, a dose comprises 3 ⁇ g of one or more first RNAs and 3 ⁇ g of one or more second RNAs.
  • a dose comprises 3 ⁇ g of one or more first RNAs and 6 ⁇ g of one or more second RNAs. In some embodiments, a dose comprises 10 ⁇ g of one or more first RNAs and 10 ⁇ g of one or more second RNAs. In some embodiments, a dose comprises 10 ⁇ g of one or more first RNAs and 20 ⁇ g of one or more second RNAs. In some embodiments, a dose comprises 30 ⁇ g of one or more first RNAs and 30 ⁇ g of one or more second RNAs. In some embodiments, a dose comprises 30 ⁇ g of one or more first RNAs and 60 ⁇ g of one or more second RNAs.
  • a dose comprises 60 ⁇ g of one or more first RNAs and 30 ⁇ g of one or more second RNAs.
  • a subsequent dose given to an individual can have the same amount of RNA as previously given to the individual.
  • a subsequent dose given to an individual can differ in the amount of RNA, as compared to the amount previously given to the individual.
  • a subsequent dose can be higher or lower than the prior dose, for example, based on consideration of various factors, including, e.g., immunogenicity and/or reactogenicity induced by the prior dose, prevalence of the disease, etc.
  • a subsequent dose can be higher than a prior dose by at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or higher.
  • a subsequent dose can be higher than a prior dose by at least 1.5-fold, at least 2-fold, at least 2.5 fold, at least 3-fold, or higher.
  • a subsequent dose can be higher than a prior dose by at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or higher. In some embodiments, a subsequent dose can be lower than a prior dose by at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70% or lower.
  • an amount the RNA described herein from 0.1 ⁇ g to 300 ⁇ g, 0.5 ⁇ g to 200 ⁇ g, or 1 ⁇ g to 100 ⁇ g, such as about 1 ⁇ g, about 2 ⁇ g, about 3 ⁇ g, about 10 ⁇ g, about 15 ⁇ g, about 20 ⁇ g, about 25 ⁇ g, about 30 ⁇ g, about 35 ⁇ g, about 40 ⁇ g, about 45 ⁇ g, about 50 ⁇ g, about 55 ⁇ g, about 60 ⁇ g, about 70 ⁇ g, about 80 ⁇ g, about 90 ⁇ g, or about 100 ⁇ g may be administered per dose (e.g., in a given dose).
  • an amount of the RNA described herein of 60 ⁇ g or lower, 55 ⁇ g or lower, 50 ⁇ g or lower, 45 ⁇ g or lower, 40 ⁇ g or lower, 35 ⁇ g or lower, 30 ⁇ g or lower, 25 ⁇ g or lower, 20 ⁇ g or lower, 15 ⁇ g or lower, 10 ⁇ g or lower, 5 ⁇ g or lower, 3 ⁇ g or lower, 2.5 ⁇ g or lower, or 1 ⁇ g or lower may be administered per dose (e.g., in a given dose).
  • an amount of the RNA described herein of at least 0.25 ⁇ g, at least 0.5 ⁇ g, at least 1 ⁇ g, at least 2 ⁇ g, at least 3 ⁇ g, at least 4 ⁇ g, at least 5 ⁇ g, at least 10 ⁇ g, at least 15 ⁇ g, at least 20 ⁇ g, at least 25 ⁇ g, at least 30 ⁇ g, at least 40 ⁇ g, at least 50 ⁇ g, or at least 60 ⁇ g may be administered per dose (e.g., in a given dose). In some embodiments, an amount of the RNA described herein of at least 3 ug may be administered in at least one of given doses.
  • an amount of the RNA described herein of at least 10 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 15 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 20 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 25 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 30 ug may be administered in at least one of given doses.
  • an amount of the RNA described herein of at least 50 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 60 ug may be administered in at least one of given doses. In some embodiments, combinations of aforementioned amounts may be administered in a regimen comprising two or more doses (e.g., a prior dose and a subsequent dose can be of different amounts as described herein). In some embodiments, combinations of aforementioned amounts may be administered in a primary regimen and a booster regimen (e.g., different doses can be given in a primary regimen and a booster regimen).
  • an amount of an RNA described herein of 0.25 ⁇ g to 60 ⁇ g, 0.5 ⁇ g to 55 ⁇ g, 1 ⁇ g to 50 ⁇ g, 5 ⁇ g to 40 ⁇ g, or 10 ⁇ g to 30 ⁇ g may be administered per dose.
  • an amount of the RNA described herein of 3 ⁇ g to 30 ⁇ g may be administered in at least one of given doses.
  • an amount of the RNA described herein of 3 ⁇ g to 20 ⁇ g may be administered in at least one of given doses.
  • an amount of the RNA described herein of 3 ⁇ g to 15 ⁇ g may be administered in at least one of given doses.
  • an amount of the RNA described herein of 3 ⁇ g to 10 ⁇ g may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of 10 ⁇ g to 30 ⁇ g may be administered in at least one of given doses.
  • a regimen administered to a subject may comprise a plurality of doses (e.g., at least two doses, at least three doses, or more). In some embodiments, a regimen administered to a subject may comprise a first dose and a second dose, which are given at least 2 weeks apart, at least 3 weeks apart, at least 4 weeks apart, or more.
  • such doses may be at least 1 month, at least 2 months, at least 3 months, at least 4 months, at least 5 months, at least 6 months, at least 7 months, at least 8 months, at least 9 months, at least 10 months, at least 11 months, at least 12 months, or more apart.
  • doses may be administered days apart, such as 1, 2, 3, 4, 5, 6, 7, 8, 9 ,10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60 or more days apart.
  • doses may be administered about 1 to about 3 weeks apart, or about 1 to about 4 weeks apart, or about 1 to about 5 weeks apart, or about 1 to about 6 weeks apart, or about 1 to more than 6 weeks apart.
  • doses may be separated by a period of about 7 to about 60 days, such as for example about 14 to about 48 days, etc.
  • a minimum number of days between doses may be about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or more.
  • a maximum number of days between doses may be about 60, 59, 58, 57, 56, 55, 54, 53, 52, 51, 50, 49, 48, 47, 46, 45, 44, 43, 42, 41, 40, 39, 38, 37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, or fewer.
  • doses may be about 21 to about 28 days apart.
  • doses may be about 19 to about 42 days apart.
  • doses may be about 7 to about 28 days apart.
  • doses may be about 14 to about 24 days.
  • doses may be about 21 to about 42 days.
  • a vaccination regimen comprises a first dose and a second dose. In some embodiments, a first dose and a second dose are administered by at least 21 days apart. In some embodiments, a first dose and a second dose are administered by at least 28 days apart. In some embodiments, a vaccination regimen comprises a first dose and a second dose, wherein the amount of RNA administered in the first dose is the same as the amount of RNA administered in the second dose. In some embodiments, a vaccination regimen comprises a first dose and a second dose wherein the amount of RNA administered in the first dose differs from that administered in the second dose.
  • a vaccination regimen comprises a first dose and a second dose, wherein the amount of RNA administered in the first dose is less than that administered in the second dose. In some embodiments, the amount of RNA administered in the first dose is 10%- 90% of the second dose. In some embodiments, the amount of RNA administered in the first dose is 10%-50% of the second dose. In some embodiments, the amount of RNA administered in the first dose is 10%-20% of the second dose. In some embodiments, the first dose and the second dose are administered at least 2 weeks apart, including, at least 3 weeks apart, at least 4 weeks apart, at least 5 weeks apart, at least 6 weeks apart or longer. In some embodiments, the first dose and the second dose are administered at least 3 weeks apart.
  • a first dose comprises less than about 30 ug of RNA and a second dose comprises at least about 30 ug of RNA.
  • a first dose comprises about 1 to less than about 30 ug of RNA (e.g., about 0.1, about 1, about 3, about 5, about 10, about 15, about 20, about 25, or less than about 30 ug of RNA) and a second dose comprises about 30 to about 100 ug of RNA (e.g., about 30, about 40, about 50, or about 60 ug of RNA).
  • a first dose comprises about 1 to about 20 ug of RNA, about 1 to about 10 ug of RNA, or about 1 to about 5 ug of RNA and a second dose comprises about 30 to about 60 ug of RNA.
  • a first dose comprises about 1 to about 10 ug of RNA (e.g., about 1, about 2, about 3, about 4, about 5, about 6, about 7, about 8, about 9, or about 10 ug of RNA) and a second dose comprises about 30 to about 60 ug of RNA (e.g., about 30, about 35, about 40, about 45, about 50, about 55, or about 60 ug of RNA).
  • a first dose comprises about 1 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises about 5 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises about 10 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises about 15 ug of RNA and a second dose comprises about 30 ug of RNA.
  • a first dose comprises about 1 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 5 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 6 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 10 ug of RNA and a second dose comprises about 60 ug of RNA.
  • a first dose comprises about 15 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 20 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 25 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises less than about 10 ug of RNA and a second dose comprises at least about 10 ug of RNA.
  • a first dose comprises about 0.1 to less than about 10 ug of RNA (e.g., about 0.1, about 0.5, about 1, about 2, about 3, about 4, about 5, about 6, about 7, about 8, or less than about 10 ug of RNA) and a second dose comprises about 10 to about 30 ug of RNA (e.g., about 10, about 15, about 20, about 25, or about 30 ug of RNA).
  • a first dose comprises about 0.1 to about 10 ug of RNA, about 1 to about 5 ug of RNA, or about 0.1 to about 3 ug of RNA and a second dose comprises about 10 to about 30 ug of RNA.
  • a first dose comprises about 0.1 to about 5 ug of RNA (e.g., about 0.1, about 0.5, about 1, about 2, about 3, about 4, about 5ug of RNA) and a second dose comprises about 10 to about 20 ug of RNA (e.g., about 10, about 12, about 14, about 16, about 18, about 20ug of RNA).
  • a first dose comprises about 0.1 ug of RNA and a second dose comprises about 10 ug of RNA.
  • a first dose comprises about 0.3 ug of RNA and a second dose comprises about 10 ug of RNA.
  • a first dose comprises about 1 ug of RNA and a second dose comprises about 10 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 10 ug of RNA. In some embodiments, a first dose comprises less than about 3 ug of RNA and a second dose comprises at least about 3 ug of RNA.
  • a first dose comprises about 0.1 to less than about 3 ug of RNA (e.g., about 0.1, about 0.2, about 0.3, about 0.5, about 0.6, about 0.7, about 0.8, about 0.9, about 1.0, about 1.5, about 2.0, or about 2.5 ug of RNA) and a second dose comprises about 3 to about 10 ug of RNA (e.g., about 3, about 4, about 5, about 6, or about 7, about 8, about 9, or about 10 ug of RNA).
  • a first dose comprises about 0.1 to about 3 ug of RNA, about 0.1 to about 1 ug of RNA, or about 0.1 to about 0.5 ug of RNA and a second dose comprises about 3 to about 10 ug of RNA.
  • a first dose comprises about 0.1 to about 1.0 ug of RNA (e.g., about 0.1, about 0.2, about 0.3, about 0.4, about 0.5, about 0.6, about 0.7, about 0.8, about 0.9, or about 1.0 ug of RNA) and a second dose comprises about 1 to about 3 ug of RNA (e.g., about 1.0, about 1.5, about 2.0, about 2.5, or about 3.0 ug of RNA).
  • a first dose comprises about 0.1 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 0.3 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 0.5 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 1 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a vaccination regimen comprises a first dose and a second dose, wherein the amount of RNA administered in the first dose is greater than that administered in the second dose.
  • the amount of RNA administered in the second dose is 10%-90% of the first dose. In some embodiments, the amount of RNA administered in the second dose is 10%-50% of the first dose. In some embodiments, the amount of RNA administered in the second dose is 10%-20% of the first dose. In some embodiments, the first dose and the second dose are administered at least 2 weeks apart, including, at least 3 weeks apart, at least 4 weeks apart, at least 5 weeks apart, at least 6 weeks apart or longer. In some embodiments, the first dose and the second dose are administered at least 3 weeks apart In some embodiments, a first dose comprises at least about 30 ug of RNA and a second dose comprises less than about 30 ug of RNA.
  • a first dose comprises about 30 to about 100 ug of RNA (e.g., about 30, about 40, about 50, or about 60 ug of RNA) and a second dose comprises about 1 to about 30 ug of RNA (e.g., about 0.1, about 1, about 3, about 5, about 10, about 15, about 20, about 25, or about 30 ug of RNA).
  • a second dose comprises about 1 to about 20 ug of RNA, about 1 to about 10 ug of RNA, or about 1 to 5 ug of RNA.
  • a first dose comprises about 30 to about 60 ug of RNA and a second dose comprises about 1 to about 20 ug of RNA, about 1 to about 10 ug of RNA, or about 0.1 to about 3 ug of RNA.
  • a first dose comprises about 30 to about 60 ug of RNA (e.g., about 30, about 35, about 40, about 45, about 50, about 55, or about 60 ug of RNA) and a second dose comprises about 1 to about 10 ug of RNA (e.g., about 1, about 2, about 3, about 4, about 5, about 6, about 7, about 8, about 9, or about 10 ug of RNA).
  • a first dose comprises about 30 ug of RNA and a second dose comprises about 1 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 5 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 10 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 15 ug of RNA.
  • a first dose comprises about 60 ug of RNA and a second dose comprises about 1 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 5 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 6 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 10 ug of RNA.
  • a first dose comprises about 60 ug of RNA and a second dose comprises about 15 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 20 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 25 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises at least about 10 ug of RNA and a second dose comprises less than about 10 ug of RNA.
  • a first dose comprises about 10 to about 30 ug of RNA (e.g., about 10, about 15, about 20, about 25, or about 30 ug of RNA) and a second dose comprises about 0.1 to less than about 10 ug of RNA (e.g., about 0.1, about 0.5, about 1, about 2, about 3, about 4, about 5, about 6, about 7, about 8, or less than about 10 ug of RNA).
  • a first dose comprises about 10 to about 30 ug of RNA, or about 0.1 to about 3 ug of RNA and a second dose comprises about 1 to about 10 ug of RNA, or about 1 to about 5 ug of RNA.
  • a first dose comprises about 10 to about 20 ug of RNA (e.g., about 10, about 12, about 14, about 16, about 18, about 20 ug of RNA) and a second dose comprises about 0.1 to about 5 ug of RNA (e.g., about 0.1, about 0.5, about 1, about 2, about 3, about 4, or about 5 ug of RNA).
  • a first dose comprises about 10 ug of RNA and a second dose comprises about 0.1 ug of RNA.
  • a first dose comprises about 10 ug of RNA and a second dose comprises about 0.3 ug of RNA.
  • a first dose comprises about 10 ug of RNA and a second dose comprises about 1 ug of RNA. In some embodiments, a first dose comprises about 10 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises at least about 3 ug of RNA and a second dose comprises less than about 3 ug of RNA.
  • a first dose comprises about 3 to about 10 ug of RNA (e.g., about 3, about 4, about 5, about 6, or about 7, about 8, about 9, or about 10 ug of RNA) and a second dose comprises 0.1 to less than about 3 ug of RNA (e.g., about 0.1, about 0.2, about 0.3, about 0.5, about 0.6, about 0.7, about 0.8, about 0.9, about 1.0, about 1.5 about 2.0, or about 2.5 ug of RNA).
  • a first dose comprises about 3 to about 10 ug of RNA and a second dose comprises about 0.1 to about 3 ug of RNA, about 0.1 to about 1 ug of RNA, or about 0.1 to about 0.5 ug of RNA.
  • a first dose comprises about 1 to about 3 ug of RNA (e.g., about 1, about 1.5, about 2.0, about 2.5, or about 3.0 ug of RNA) and a second dose comprises about 0.1 to 0.3 ug of RNA (e.g., about 0.1, about 0.2, about 0.3, about 0.4, about 0.5, about 0.6, about 0.7, about 0.8, about 0.9, or about 1.0 ug of RNA).
  • a first dose comprises about 3 ug of RNA and a second dose comprises about 0.1 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 0.3 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 0.6 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 1 ug of RNA. In some embodiments, a vaccination regimen comprises at least two doses, including, e.g., at least three doses, at least four doses or more. In some embodiments, a vaccination regimen comprises three doses.
  • the time interval between the first dose and the second dose can be the same as the time interval between the second dose and the third dose. In some embodiments, the time interval between the first dose and the second dose can be longer than the time interval between the second dose and the third dose, e.g., by days or weeks (including, e.g., at least 3 days, at least 4 days, at least 5 days, at least 6 days, at least 1 week, at least 2 weeks, at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer).
  • the time interval between the first dose and the second dose can be shorter than the time interval between the second dose and the third dose, e.g., by days or weeks (including, e.g., at least 3 days, at least 4 days, at least 5 days, at least 6 days, at least 1 week, at least 2 weeks, at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer).
  • the time interval between the first dose and the second dose can be shorter than the time interval between the second dose and the third dose, e.g., by at least 1 month (including, e.g., at least 2 months, at least 3 months, at least 4 months, at least 5 months, at least 6 months, at least 7 months, at least 8 months, at least 9 months, at least 10 months, at least 11 months, at least 12 months, or longer).
  • a last dose of a primary regimen and a first dose of a booster regimen are given at least 2 months, at least 3 months, at least 4 months, at least 5 months, at least 6 months, at least 7 months, at least 8 months, at least 9 months, at least 10 months, at least 11 months, at least 12 months, or more apart.
  • a primary regimen may comprises two doses.
  • a primary regimen may comprises three doses.
  • a first dose and a second dose (and/or other subsequent dose) may be administered by intramuscular injection.
  • a first dose and a second dose (and/or other subsequent dose) may be administered in the deltoid muscle.
  • a first dose and a second dose (and/or other subsequent dose) may be administered in the same arm.
  • an mRNA composition described herein is administered (e.g., by intramuscular injection) as a series of two doses (e.g., 0.3 mL each) 21 days apart.
  • an mRNA composition described herein is administered (e.g., by intramuscular injection) as a series of two doses (e.g., 0.2 mL each) 21 days apart.
  • an mRNA composition described herein is administered (e.g., by intramuscular injection) as a series of three doses (e.g., 0.3 mL or lower including, e.g., 0.2 mL), wherein doses are given at least 3 weeks apart.
  • the first and second doses may be administered 3 weeks apart, while the second and third doses may be administered at a longer time interval than that between the first and the second doses, e.g., at least 4 weeks apart or longer (including, at least 5 weeks, at least 6 weeks, at least 7 weeks, at least 8 weeks, at least 9 weeks, or longer).
  • each dose is about 60 ug. In some embodiments, each dose is about 50 ug.
  • each dose is about 30 ug. In some embodiments, each dose is about 25 ug. In some embodiments, each dose is about 20 ug. In some embodiments, each dose is about 15 ug. In some embodiments, each dose is about 10 ug. In some embodiments, each dose is about 3 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 60 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 50 ug.
  • a vaccination regimen e.g., a primary vaccination regimen and/or a booster vaccination regimen
  • At least one dose given in a vaccination regimen is about 30 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 25 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 20 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 15 ug.
  • At least one dose given in a vaccination regimen is about 10 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 3 ug. In one embodiment, an amount of the RNA described herein of about 60 ⁇ g is administered per dose. In one embodiment, an amount of the RNA described herein of about 50 ⁇ g is administered per dose. In one embodiment, an amount of the RNA described herein of about 30 ⁇ g is administered per dose. In one embodiment, an amount of the RNA described herein of about 25 ⁇ g is administered per dose.
  • an amount of the RNA described herein of about 20 ⁇ g is administered per dose. In one embodiment, an amount of the RNA described herein of about 15 ⁇ g is administered per dose. In one embodiment, an amount of the RNA described herein of about 10 ⁇ g is administered per dose. In one embodiment, an amount of the RNA described herein of about 5 ⁇ g is administered per dose. In one embodiment, an amount of the RNA described herein of about 3 ⁇ g is administered per dose. In one embodiment, at least two of such doses are administered. For example, a second dose may be administered about 21 days following administration of the first dose.
  • the efficacy of the RNA vaccine described herein is at least 70%, at least 80%, at least 90, or at least 95% beginning 7 days after administration of the second dose (e.g., beginning 28 days after administration of the first dose if a second dose is administered 21 days following administration of the first dose).
  • such efficacy is observed in populations of age of at least 50, at least 55, at least 60, at least 65, at least 70, or older.
  • the efficacy of the RNA vaccine described herein (e.g., administered in two doses, wherein a second dose may be administered about 21 days following administration of the first dose, and administered, for example, in an amount of about 30 ⁇ g per dose) beginning 7 days after administration of the second dose (e.g., beginning 28 days after administration of the first dose if a second dose is administered 21 days following administration of the first dose) in populations of age of at least 65, such as 65 to 80, 65 to 75, or 65 to 70, is at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, or at least 95%.
  • Such efficacy may be observed over time periods of up to 1 month, 2 months, 3 months, 6 months or even longer.
  • vaccine efficacy is defined as the percent reduction in the number of subjects with evidence of infection (vaccinated subjects vs. non-vaccinated subjects).
  • methods and agents described herein are administered to a paediatric population.
  • the paediatric population comprises or consists of subjects under 18 years, e.g., 5 to less than 18 years of age, 12 to less than 18 years of age, 16 to less than 18 years of age, 12 to less than 16 years of age, 5 to less than 12 years of age, or 6 months to less than 12 years of age.
  • the paediatric population comprises or consists of subjects under 5 years, e.g., 2 to less than 5 years of age, 12 to less than 24 months of age, 7 to less than 12 months of age, or less than 6 months of age.
  • an mRNA composition described herein is administered to subjects of less than 2 years old, for example, 6 months to less than 2 years old.
  • an mRNA composition described herein is administered to subjects of less than 6 months old, for example, 1 month to less than 4 months old.
  • a dosing regimen e.g., doses and/or dosing schedule
  • a paediatric population may vary for different age groups.
  • a subject 6 months through 4 years of age may be administered according to a primary regimen comprising at least three doses, in which the initial two doses are administered at least 3 weeks (including, e.g., at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer) apart followed by a third dose administered at least 8 weeks (including, e.g., at least 9 weeks, at least 10 weeks, at least 11 weeks, at least 12 weeks, or longer) after the second dose.
  • at least one dose administered is 3 ug RNA described herein.
  • a subject 5 years of age and older may be administered according to a primary regimen comprising at least two doses, in which the two doses are administered at least 3 weeks (including, e.g., at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer) apart.
  • at least one dose administered is 10 ug RNA described herein.
  • a subject 5 years of age and older who are immunocompromised may be administered according to a primary regimen comprising at least three doses, in which the initial two doses are administered at least 3 weeks (including, e.g., at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer) apart, followed by a third dose administered at least 4 weeks (including, e.g., at least 5 weeks, at least 6 weeks, at least 7 weeks, at least 8 weeks, at least 9 weeks, at least 10 weeks, at least 11 weeks, at least 12 weeks, or longer) after the second dose.
  • a primary regimen comprising at least three doses, in which the initial two doses are administered at least 3 weeks (including, e.g., at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer) apart, followed by a third dose administered at least 4 weeks (including, e.g., at least 5 weeks, at least 6 weeks, at least 7 weeks, at least 8 weeks, at least 9 weeks, at
  • an mRNA composition described herein is administered to subjects of age 12 or older and each dose is about 30 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 12 or older (including, e.g., age 18 or older) and each dose is higher than 30 ug, including, e.g., 35 ug, 40 ug, 45 ug, 50 ug, 55 ug, 60 ug, 65 ug , 70 ug, or higher. In some such embodiments, an mRNA composition described herein is administered to subjects of age 12 or older and each dose is about 60 ug.
  • an mRNA composition described herein is administered to subjects of age 12 or older and each dose is about 50 ug.
  • the paediatric population comprises or consists of subjects 12 to less than 18 years of age including subjects 16 to less than 18 years of age and/or subjects 12 to less than 16 years of age.
  • treatments may comprise 2 vaccinations 21 days apart, wherein, in one embodiment, the vaccine is administered in an amount of 30 ⁇ g RNA per dose, e.g., by intramuscular administration.
  • higher doses are administered to older pediatric patients and adults, e.g., to patients 12 years or older, compared to younger children or infants, e.g.2 to less than 5 years old, 6 months to less than 2 years old, or less than 6 months old.
  • higher doses are administered to children who are 2 to less than 5 years old, as compared to toddlers and/or infants, e.g., who are 6 months to less than 2 years old, or less than 6 months old.
  • the paediatric population comprises or consists of subjects 5 to less than 18 years of age including subjects 12 to less than 18 years of age and/or subjects 5 to less than 12 years of age.
  • treatments may comprise 2 vaccinations 21 days apart, wherein, in various embodiments, the vaccine is administered in an amount of 10 ⁇ g, 20 ⁇ g, or 30 ⁇ g RNA per dose, e.g., by intramuscular administration.
  • an mRNA composition described herein is administered to subjects of age 5 to 11 and each dose is about 10 ug.
  • the paediatric population comprises or consists of subjects less than 5 years of age including subjects 2 to less than 5 years of age, subjects 12 to less than 24 months of age, subjects 7 to less than 12 months of age, subjects 6 to less than 12 months of age and/or subjects less than 6 months of age.
  • treatments may comprise 2 vaccinations, e.g., 21 to 42 days apart, e.g., 21 days apart, wherein, in various embodiments, the vaccine is administered in an amount of 3 ⁇ g, 10 ⁇ g, 20 ⁇ g, or 30 ⁇ g RNA per dose, e.g., by intramuscular administration.
  • an mRNA composition described herein is administered to subjects of age 2 to less than 5 and each dose is about 3 ug.
  • an mRNA composition described herein is administered to subjects of about 6 months to less than about 5 years and each dose is about 3 ug.
  • an mRNA composition described herein is administered to subjects of age 12 or older and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 60 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 12 or older and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 30 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 12 or older and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 15 ug.
  • a vaccination regimen e.g., a primary vaccination regimen and/or a booster vaccination regimen
  • an mRNA composition described herein is administered to subjects of age 5 to less than 12 years of age and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 10 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 2 to less than 5 and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 3 ug.
  • an mRNA composition described herein is administered to subjects of 6 months to less than age 2 and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 3 ug or lower, including, e.g., 2 ug, 1 ug, or lower). In some embodiments, an mRNA composition described herein is administered to infants of less than 6 months and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 3 ug or lower, including, e.g., 2 ug, 1 ug, 0.5 ug, or lower).
  • a dose administered to subjects in need thereof may comprise administration of a single mRNA composition described herein.
  • a dose administered to subjects in need thereof may comprise administration of at least two or more (including, e.g., at least three or more) different drug products/formulations.
  • at least two or more different drug products/formulations may comprise at least two different mRNA compositions described herein (e.g., in some embodiments each comprising a different RNA construct).
  • a subject is administered two or more RNAs (e.g., as part of either a primary regimen or a booster regimen), wherein the two or more RNAs are administered on the same day or same visit.
  • the two or more RNAs are administered in separate compositions, e.g., by administering each RNA to a separate part of the subject (e.g., by intramuscular administration to different arms of the subject or to different sites of the same arm of the subject).
  • the two or more RNAs are mixed prior to administration (e.g., mixed immediately prior to administration, e.g., by the administering practitioner).
  • the two or more RNAs are formulated together (e.g., by (a) mixing separate populations of LNPs, each population comprising a different RNA; or (b) by mixing two or more RNAs prior to LNP formulation, so that each LNP comprises two or more RNAs).
  • a subject is administered or a composition comprises one or more first RNAs in an amount that is 0.01 to 100 times that of one or more second RNAs (e.g., wherein the amount of the one or more first RNAs is 0.01 to 50, 0.01 to 4, 0.01 to 30, 0.01 to 25, 0.01 to 20, 0.01 to 15, 0.01 to 10, 0.01 to 9, 0.01 to 8, 0.01 to 7, 0.01 to 6, 0.01 to 5, 0.01 to 4, 0.01 to 3, 0.01 to 2, 0.01 to 1.5, 1 to 50, 1 to 4, 1 to 30, 1 to 25, 1 to 20, 1 to 15, 1 to 10, 1 to 9, 1 to 8, 1 to 7, 1 to 6, 1 to 5, 1 to 4, 1 to 3, 1 to 2, or 1 to 1.5 times that of the one or more second RNAs).
  • the amount of the one or more first RNAs is 0.01 to 50, 0.01 to 4, 0.01 to 30, 0.01 to 25, 0.01 to 20, 0.01 to 15, 0.01 to 10, 0.01 to 9, 0.01 to 8, 0.01 to 7, 0.01 to 6, 0.01 to 5, 0.01 to 4, 0.01 to
  • a subject is administered or a composition comprises one or more first RNAs and one or more second RNAs, wherein the amount of the one or more first RNAs is 1 to 5 times that of the one or more second RNAs.
  • a subject is administered or a composition comprises one or more first RNAs and one or more second RNAs, wherein the concentration of the one or more first RNAs is 3 times that of the one or more second RNAs.
  • a subject is administered or a composition comprises two first RNAs, each encoding an antigen derived from an influenza strain or variant, wherein the amount of each RNA is not the same.
  • the ratio of the two first RNAs is 1:0.01-100 (e.g., 1: 0.01-50; 1: 0.01-40; 1: 0.01-30; 1: 0.01-25; 1: 0.01-20; 1: 0.01- 15; 1: 0.01-10; 1: 0.01-9; 1: 0.01-8; 1: 0.01-7; 1: 0.01-6; 1: 0.01-5; 1: 0.01-4; 1: 0.01-3; 1: 0.01-2; 1: 0.01-1.5, 1: 0.1-10, 1: 0.1-5, 1: 0.1-3, 1: 2-10, 1: 2-5, or 1: 2-3).
  • a subject is administered or a composition comprises two first RNAs at a ratio of 1:3.
  • a subject is administered or a composition comprises two first RNAs at a ratio of 1:2.
  • the ratio of the three first RNAs is 1: 0.01-100: 0.01- 100 (e.g., 1: 0.01-50: 0.01-50; 1: 0.01-40: 0.01-40; 1: 0.01-30: 0.01-30; 1: 0.01-25: 0.01-25; 1: 0.01-20: 0.01-20; 1: 0.01-15: 0.01-15; 1: 0.01-10: 0.01-10; 1: 0.01-9: 0.01-9; 1: 0.01-8: 0.01-8; 1: 0.01-7: 0.01-7; 1: 0.01-6: 0.01-6; 1: 0.01-5: 0.01-5; 1: 0.01-4: 0.01-4; 1: 0.01-3: 0.01-3; 1: 0.01-2: 0.01-2; 1: 0.01-1.5: 0.01-1.5; 1: 0.1-10: 0.1-10, 1: 0.1-5: 0.1-5, 1: 0.1-3: 0.1-3, 1: 2
  • a subject is administered or a composition comprises three first RNAs at a ratio of 1:1:3. In some embodiments, a subject is administered or a composition comprises three first RNAs at a ratio of 1:3:3. In some embodiments, a subject is administered or a composition comprises two or more second RNAs, one or more of which encode an HA protein of a Type A influenza virus, and one or more of which encode an HA protein of a Type B influenza virus. In some embodiments, the one or more second RNAs that encode an HA protein of a Type A influenza virus and the one or more second RNAs that encode an HA protein of a Type B influenza virus are present or are administered in the same amount (i.e., at a ratio of 1:1).
  • the one more second RNAs that encode an HA protein of a Type A influenza virus and the one or more second RNAs that encode an HA protein of a Type B influenza virus are administered in different amounts (e.g., in a ratio of between 1:10 and 10:1, or in a ratio of 1:2, 1:3, 1:4, 1:5, 2:1, 3:1, 4:1, or 5:1 (total RNA encoding an A antigen:total RNA encoding a B antigen).
  • a subject is administered or a composition comprises two second RNAs, each encoding an HA protein of a different influenza virus type (e.g., a second RNA encoding an HA protein of a Type A influenza virus and a second RNA encoding an HA protein of a Type B influenza virus).
  • the second RNAs are administered or are present in the same amount (i.e., at a 1:1 ratio).
  • the second RNAs are administered or are present in different amounts (e.g., in a ratio of between 1:10 and 10:1, or in a ratio of 1:2, 1:3, 1:4, 1:5, 2:1, 3:1, 4:1, or 5:1 (A:B)).
  • a subject is administered or a composition comprises each of the three second RNAs in the same amount (i.e., at a 1:1:1 ratio).
  • a subject is administered or a composition comprises a different amount of one or more of the three second RNAs (e.g., in a ratio of between 1:1:2 and 1:1:10 (e.g., in a ratio of 1:1:2, 1:1:3, 1:1:4, or 1:1:5), or in a ratio of between 2:2:1 and 2:2:10, (e.g., in a ratio of 2:2:1, 3:3:1, 4:4:1, or 5:5:1).
  • a subject is administered or a composition comprises three second RNAs, two of which encode HA proteins of different influenza type A virus, and one of which encodes an HA protein of an influenza type B virus.
  • the second RNA encoding an HA protein of an influenza type B virus is present or is administered in a higher amount as compared to either second RNA encoding an HA protein from a type A virus (e.g., in some embodiments, the ratios of the two second RNAs encoding HA proteins from type A influenza viruses relative to the second RNA encoding an HA protein from a type B influenza virus is 1:1:1-10, 1:1:2, 1:1:3, 1:1:4, or 1:1:5 (A:A:B)).
  • the two second RNAs encoding an HA protein of an influenza type A viruses are each present or are each administered in a higher amount as compared to the second RNA encoding an HA protein from a type B virus (e.g., in some embodiments, the ratios of the two second RNAs encoding HA proteins from type A influenza viruses relative to the second RNA encoding an HA protein from a type B influenza virus is 1-10:1-10:1, 2:2:1, 3:3:1, 4:4:1, or 5:5:1 (A:A:B)).
  • a subject is administered or a composition comprises four second RNAs, each encoding an HA protein of a different influenza virus subtype.
  • the four second RNAs comprise two second RNAs encoding HA proteins of different influenza type A viruses and two second RNAs encoding HA proteins of different influenza type B virus (e.g., an HA protein of an H1N1 virus, an HA protein of an H3N2 virus, an HA protein of a B/Victoria lineage virus, and an HA protein of a B/Yamagata lineage virus).
  • each of the two second RNAs encoding an HA protein of an influenza type A virus and each of the two second RNAs encoding an HA protein of an influenza type B virus are present in the same amount (i.e., the ratio of the four second RNAs is 1:1:1:1).
  • the two second RNAs encoding an HA protein of an influenza type B virus are each administered or are each present in a higher amount as compared to either second RNA encoding an HA protein from a type A virus (e.g., in some embodiments, the ratios of the two second RNAs encoding HA proteins from type A influenza viruses relative to the two second RNAs encoding an HA protein from a type B influenza virus is 1:1:2-10:2-10, 1:1:2-5:2-5, 1:1:2:2, 1:1:3:3, 1:1:4:4, 1:1:5:5, 1:1:6:6, 1:1:7:7, 1:1:8:8, 1:1:9:9, 1:1:10:10 (A:A:B:B)).
  • the two second RNAs encoding an HA protein of an influenza type A virus are each administered or are each present in a higher amount as compared to either second RNA encoding an HA protein from a type B virus (e.g., in some embodiments, the ratios of the two second RNAs encoding HA proteins from type A influenza viruses relative to the two second RNAs encoding an HA protein from a type B influenza virus is 2-10:2-10:1:1, 2-5:2-5:1:1, 2:2:1:1, 3:3:1:1, 4:4:1:1, 5:5:1:1, 6:6:1:1, 7:7:1:1, 8:8:1:1, 9:9:1:1, 10:10:1:1 (A:A:B:B)).
  • a composition comprises or a subject is administered four second RNAs, comprising three second RNAs that encode HA proteins of different influenza type A viruses and one second RNA encoding an HA protein of an influenza type B virus (e.g., A/Wisconsin (H1N1), A/Darwin (H3N2), A/Cambodia (H3N2), and B/Austria (Victoria)).
  • an influenza type B virus e.g., A/Wisconsin (H1N1), A/Darwin (H3N2), A/Cambodia (H3N2), and B/Austria (Victoria)
  • each of the four second RNAs is administered or is present in the same amount (i.e., at a 1:1:1:1 ratio).
  • the amount of second RNA encoding an HA protein of an influenza type B virus is higher than any one of the second RNAs encoding an HA protein of an influenza type A virus (e.g., in some embodiments, the ratio of second RNAs is 1:1:1:1-10, 1:1:1:1-5,1:1:1:2, 1:1:1:3, 1:1:1:4, or 1:1:1:5 (A:A:A:B)). In some embodiments, the ratio of second RNAs administered or in a composition is 1:1:1:5 (A:A:A:B).
  • the amount of each of the second RNAs encoding an HA protein of an influenza type A virus is higher than that of the second RNA encoding an HA protein of an influenza type B virus (e.g., in some embodiments, the ratio of second RNAs is 1-10:1-10:1-10:1, 1-5:1-5:1- 5:1, 2:2:2:1, 3:3:3:1, 4:4:4:1, or 5:5:5:1 (A:A:B)).
  • 0.1 to 100 ⁇ g e.g., 1 to 90 ⁇ g, 3 to 90 ⁇ g, 1 to 60 ⁇ g, 3 to 60 ⁇ g, 5 to 60 ⁇ g, 10 to 60 ⁇ g, 30 to 60 ⁇ g, 3 to 30 ⁇ g.
  • a subject is administered or a composition comprises one or more second RNAs encoding an HA protein of an influenza virus in a total amount of 3 ⁇ g, 5 ⁇ g, 6 ⁇ g, 10 ⁇ g, 15 ⁇ g, 20 ⁇ g, 25 ⁇ g, 30 ⁇ g, 45 ⁇ g, 60 ⁇ g, 75 ⁇ g, or 90 ⁇ g.
  • a subject is administered or a composition comprises three or four second RNAs, each encoding an HA antigen of a different influenza strain, in one of the amounts listed in the below Table C (each “Influenza Component” corresponding to a second RNA encoding an HA antige (e.g., a second RNA as described herein).
  • Table 1 Exemplary Amounts of Second RNAs Encoding HA Antigens Combination Influenza Influenza Influenza Influenza Total # Component 1 Component 2 Component 3 Component 4 1 7.5 ⁇ g (A type) 7.5 ⁇ g (A type) 7.5 ⁇ g (B type) 7.5 ⁇ g (B type) 30 ⁇ g 2 15 ⁇ g (A type) 15 ⁇ g (A type) 15 ⁇ g (B type) 15 ⁇ g (B type) 60 ⁇ g 3 11.25 ⁇ g (A 11.25 ⁇ g (A 11.25 ⁇ g (B 11.25 ⁇ g (B 45 ⁇ g type) type) type) type) type) type) 4 5 ⁇ g (A type) 5 ⁇ g (A type) 25 ⁇ g (B type) 25 ⁇ g (B type) 60 ⁇ g 5 2.5 ⁇ g (A type) 2.5 ⁇ g (A type) 12.5 ⁇ g (B 12.5 ⁇ g (B 30 ⁇ g type) type) 6 7.5 ⁇ g (A type) 7.5
  • influenza vaccine is an alphainfluenza virus, a betainfluenza virus, a gammainfluenza virus or a deltainfluenza virus vaccine.
  • the vaccine is an Influenza A virus, an Influenza B virus, an Influenza C virus, or an Influenza D virus vaccine.
  • influenza A virus vaccine comprises a hemagglutinin selected from H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and H18, or an immunogenic fragment or variant of the same, or a nucleic acid (e.g., RNA) encoding any one of the same.
  • influenza A vaccine comprises or encodes a neuraminidase (NA) selected from N1, N2, N3, N4, N5, N6, N7, N8, N9, N10, and N11, or an immunogenic fragment or variant of the same, or a nucleic acid (e.g., RNA) encoding any one of the same.
  • NA neuraminidase
  • the influenza vaccine comprises at least one Influenza virus hemagglutinin (HA), neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1 ), non-structural protein 2 (NS2), nuclear export protein (NEP), polymerase acidic protein (PA), polymerase basic protein PB1, PB1-F2, and/or polymerase basic protein 2 (PB2), or an immunogenic fragment or variant thereof, or a nucleic acid (e.g., RNA) encoding any of one of the same.
  • HA hemagglutinin
  • NA nucleoprotein
  • M1 matrix protein 1
  • M2 matrix protein 2
  • NEP nuclear export protein
  • PA polymerase acidic protein
  • PB1-F2 polymerase basic protein 2
  • PB2 polymerase basic protein 2
  • compositions of the disclosure may be used to achieve methods of the disclosure.
  • Other objects, features and advantages of the present disclosure will become apparent from the following detailed description. It should be understood, however, that the detailed description and the specific examples, while indicating specific embodiments of the disclosure, are given by way of illustration only, since various changes and modifications within the spirit and scope of the disclosure will become apparent to those skilled in the art from this detailed description.
  • the term “about” is used to indicate that a value includes the inherent variation of error for the measurement or quantitation method.
  • A, B, and/or C includes: A alone, B alone, C alone, a combination of A and B, a combination of A and C, a combination of B and C, or a combination of A, B, and C.
  • compositions and methods for their use may “comprise,” “consist essentially of,” or “consist of” any of the ingredients or steps disclosed throughout the specification. Compositions and methods “consisting essentially of” any of the ingredients or steps disclosed limits the scope of the claim to the specified materials or steps which do not materially affect the basic and novel characteristic of the claimed disclosure.
  • the drug product composition is an influenza modRNA drug substance targeting the Wisconsin 2021/2022 hemagglutinin.
  • the immunogenic composition comprising one lipid nanoparticle encapsulated mRNA molecule encoding HA is monovalent and has a dose selected from any one of 1 ⁇ g mRNA, 2 ⁇ g RNA, 5 ⁇ g RNA, and 20 ⁇ g RNA.
  • the immunogenic composition comprising one lipid nanoparticle encapsulated mRNA molecule encoding HA, a second lipid nanoparticle encapsulated mRNA molecule encoding HA, a third lipid nanoparticle encapsulated mRNA molecule encoding NA, and a fourth lipid nanoparticle encapsulated mRNA molecule encoding NA, wherein the total dose is up to 20 ⁇ g RNA.
  • the subject is aged 30-50 years.
  • EXAMPLE 2 SHIPPING AND CONTAINER CLOSURE INFORMATION
  • the Drug Product is shipped frozen on dry ice.
  • the primary container closure is a 2 mL glass Type 1 vial with 13 mm stopper.
  • the drug product should be stored at -60 to -90 °C.
  • EXAMPLE 3 Dosage forms
  • the PF-07252220 influenza modRNA immunogenic composition candidates include one of 3 different dosage forms, selected from 2 monovalent forms and one quadrivalent form, each of which incorporate different constructs of mRNA.
  • the immunogenic composition includes modRNA encoding a strain-specific full length, codon- optimized HA envelope glycoprotein which is responsible for viral binding to target cells and mediating cell entry.
  • the immunogenic composition is a preservative-free, sterile dispersion of LNPs in aqueous cryoprotectant buffer for IM administration.
  • the immunogenic composition is formulated at 0.1 mg/mL RNA in 10 mM Tris buffer, 300 mM sucrose, pH 7.4 as a single-dose vial with 0.5 mL/vial fill volume, and 0.3 mL nominal volume. 4.2.1.
  • the specific constructs i.e., Wisconsin modRNA [Wisc2019 HA] and blender modRNA [Phuk2013 HA]) or constructs (quadrivalent: Wisconsin modRNA, Pharmaceutical modRNA, Washington modRNA, and Cambodia modRNA, in the drug substance (modRNA) are the only active ingredient(s) in the DP.
  • the drug substance is formulated in 10 mM HEPES buffer, 0.1 mM EDTA at pH 7.0 and stored at 20 ⁇ 5 °C in HDPE bottles EVA flexible containers.
  • the RNA contains common structural elements optimized for mediating high RNA stability and translational efficiency (5'- cap, 5'UTR, 3'-UTR, poly(A) - tail; see table and sequences below). Furthermore, an intrinsic signal peptide (sec) is part of the open reading frame and is translated as an N-terminal peptide.
  • the RNA does not contain any uridines; instead of uridine the modified N1-methylpseudouridine is used in RNA synthesis.
  • the specific constructs each comprise the following elements: 5′-cap analog (m 2 7,3’-O Gppp(m 1 2’-O )ApG) for production of RNA containing a cap1 structure is shown below on the penultimate nucleoside of the 5′- end of the RNA chain) is incorporated into the drug substance by using a respective cap analog during in vitro transcription.
  • the cap1 structure is superior to other cap structures, since cap1 is not recognized by cellular factors such as IFIT1 and, thus, cap1-dependent translation is not inhibited by competition with eukaryotic translation initiation factor 4E .
  • IFIT1 expression mRNAs with a cap1 structure give higher protein expression levels.
  • Table 3 Table of elements Element Description Position cap A modified 5’-cap1 structure (m 7 G + m 3' -5'-ppp-5'-Am) 1-2 5’-UTR 5 ⁇ -untranslated region derived from human alpha-globin 3-54 RNA with an optimized Kozak sequence 3’-UTR The 3 ⁇ untranslated region comprises two sequence 3880-4174 elements derived from the amino-terminal enhancer of split (AES) mRNA and the mitochondrial encoded 12S ribosomal RNA to confer RNA stability and high total protein expression.
  • AES amino-terminal enhancer of split
  • poly(A) A 110-nucleotide poly(A)-tail consisting of a stretch of 4175-4284 30 adenosine residues, followed by a 10-nucleotide linker sequence and another 70 adenosine residues.
  • the primary objective of the DNase I digestion step is to reduce the size of linear DNA template to enable subsequent removal across the ultrafiltration/diafiltration step.
  • a DNase I solution are added at the end of the final IVT incubation. Temperature and agitation rate from IVT step are maintained during this step.
  • the primary objective of the proteinase K digestion step is to reduce the size of proteins in the reaction mixture for subsequent removal across the ultrafiltration/diafiltration step. Proteinase K solution is added to the reaction vessel and incubated for a predetermined amount of time.
  • RNA drug substance is purified by a single 2-stage Ultrafiltration (UF) and diafiltration (DF) (UFDF) to produce the RNA drug substance.
  • UFDF 2-stage Ultrafiltration
  • DF diafiltration
  • the UFDF step removes small process-related impurities and concentrates, and buffer exchanges the RNA into the final DS formulation.
  • the diafiltered retentate is then concentrated, if needed, and recovered through a dual-layer filter into a flexible container.
  • the UFDF system is subsequently rinsed and added to the retentate pool through the same dual-layer filter. Formulation buffer may be added.
  • the final pool is then filtered through a second dual-layer filter into HDPE bottle(s).
  • Ratios may be calculated from input flow rates.
  • Lipid Nanoparticle (LNP) Formation and Stabilization To form the LNPs, the citrate buffer is combined in-line with the diluted drug substance in a 4:1 flowrate ratio to create the aqueous phase. The organic and aqueous phases are fed into one or more T-mixer(s) to form the LNPs. Post formation of the LNP suspension, the LNPs are stabilized via in-line dilution with citrate buffer in a 2:1 ratio of LNP suspension to citrate buffer and then collected in a vessel which is maintained at 2-25 °C.
  • the tangential flow filtration (TFF) membranes are flushed with Tris buffer for equilibration.
  • the LNPs are processed through a tangential flow filtration (TFF) unit operation where they are concentrated and then buffer exchanged with 2 diavolumes of tris buffer to remove ethanol from the suspension.
  • the LNPs are then concentrated further and buffer exchanged with ⁇ 8 additional diavolumes of Tris buffer.
  • the excipients Tromethamine (Tris base) and Tris Hydrochloride (HCl) present in the LNP drug product are buffer components used in pharmaceuticals and suitable to achieve the desired product pH. Sucrose is also included and was selected for its stabilizing effect to enable storage as a frozen composition prior to distribution and refrigeration at point of use.
  • the 4 lipid excipients in the immunogenic composition are both functional and structural lipids utilized as part of the modRNA platform. 4.3. Dosage and Administration The immunogenic composition is diluted as needed with normal saline, either by in-vial dilution or syringe to syringe mixing, prior to administration of the monovalent compositions or combination for the bivalent compositions.
  • the immunogenic composition is dosed in the range of 3.75 to 30 ⁇ g per dose with an injection volume of 0.3 mL. Except for the 30- ⁇ g dose, dilution with sterile 0.9% sodium chloride (normal saline) is required for dosing.
  • the 4 dose levels are: • 3.75 ⁇ g mRNA • 7.5 ⁇ g mRNA • 15 ⁇ g mRNA • 30 ⁇ g mRNA
  • the Wisconsin immunogenic composition is also dosed as a bivalent vaccine in combination with the Sonic immunogenic composition in a total delivered volume of 0.3 mL.
  • the proposed dosing range (total RNA) and ratios of Wisconsin (W) immunogenic composition to Sonic (P) immunogenic composition in the bivalent immunogenic composition are: • 15 ⁇ g at 1W:1P (7.5 ⁇ g A + 7.5 ⁇ g B) • 30 ⁇ g at 1W:1P (15 ⁇ g A + 15 ⁇ g B) • 22.5 ⁇ g at 1W:2P (7.5 ⁇ g A + 15 ⁇ g B) • 18.75 ⁇ g at 1W:4P (3.75 ⁇ g A + 15 ⁇ g B)
  • the immunogenic composition is dosed with an injection volume of 0.3 mL containing each of the 4 modRNA sequences for a total dose of up to 30 ⁇ g.
  • the influenza modRNA immunogenic composition is comprised of one or more nucleoside-modified mRNAs that encode the full-length HA glycoprotein derived from seasonal human influenza strains.
  • the modRNA is formulated with 2 functional and 2 structural lipids, which protect the modRNA from degradation and enable transfection of the modRNA into host cells after IM injection.
  • Influenza HA is the most abundant envelope glycoprotein on the surface of influenza A and B virions. The primary pharmacology of the influenza modRNA immunogenic composition was evaluated in nonclinical studies in vitro and in vivo.
  • influenza modRNA immunogenic composition which is to encode influenza HA that induces an immune response characterized by both a strong functional antibody responses and a Th1-type CD4+ and an IFNg+ CD8+ T-cell response.
  • Efficient in vitro expression of the HA glycoprotein from influenza modRNA vaccines was demonstrated in cultured cells.
  • Mouse and rat immunogenicity studies demonstrated that influenza modRNA vaccines elicited strong functional and neutralizing antibody responses and CD4+ and CD8+ T- cell responses.
  • Immunogenicity studies in mice, benchmarked against a licensed, adjuvanted inactivated influenza vaccine also support the potential use of a multivalent influenza modRNA immunogenic composition formulation to target 4 different influenza virus strains.
  • a Lipid Nanoparticle Encapsulated RNA immunogenic composition Encoding the Influenza HA as a Vaccine Antigen
  • the influenza modRNA immunogenic composition is based on a modRNA platform technology.
  • the single-stranded, 5′-capped modRNA contains an open reading frame encoding the HA vaccine antigen and features structural elements optimized for high efficacy of the RNA.
  • the modRNA also contains a substitution of 1-methyl-pseudouridine for each uridine to decrease recognition of the vaccine RNA by innate immune sensors, such as TLRs 7 and 8, resulting in decreased innate immune activation and increased protein translation.
  • the modRNA is encapsulated in a LNP for delivery into target cells.
  • the formulation contains 2 functional lipids, ALC-0315 and ALC-0159, and 2 structural lipids DSPC (1,2-distearoyl-sn-glycero-3- phosphocholine) and cholesterol.
  • the physicochemical properties and the structures of the 4 lipids are shown in the Table below.
  • PF-07252220 (IRV) vaccine for Suspension for Injection is supplied as a white to off-white sterile frozen liquid, packaged in a 2 mL clear glass vial with a rubber stopper, aluminum overseal and flip off cap.
  • the solution is a white to off-white opalescent liquid which may contain white to off white opaque, amorphous particles.
  • the vial contains 0.5 mL with an extractable volume of 0.3 mL for further dilution via syringe mixing. For in-vial dilution, the vial contents (0.5 mL) should be accounted for the final dosing solution.
  • Each vial includes the 0.1 mg/mL of PF-07252220 in a Lipid Nanoparticle (LNP) construct in 300 mM sucrose and 10 mM Tris, pH 7.4. There is no microbiological growth inhibitor in the formulation.
  • PF-07252220 consists of five variations; four monovalent strain presentations and a quadrivalent strain presentation. The monovalent presentations may be further mixed to bivalent and quadrivalent dosing solutions at the point of use.
  • Vials should be thawed at room temperature (no more than 30 °C/ 86 °F) for approximately 30 minutes and then mixed by gently inverting the vial(s) 10 times.
  • the investigational product will be administered intramuscularly.
  • Table 12 MONOVALENT DOSE PREPARATIONS USING 0.5 ML FILLED VOLUME VIALS OF MONOVALENT INFLUENZA MOD RNA VACCINE D ose Dilution Volume of Volume Final Final Dosing Final Max Type PF- of 0.9% Volume Solution Injection number 07252220 Sodium of concentration Volume of Chloride Dosing (in Diluted Doses solution Syringe/Vial) per DP vial 3.75 Syringe 0.3 mL 2.1 mL 2.4 mL 12.5 mcg/mL 0.3 mL 5 mcg to 7.5 In-Vial 0.5 mL 1.5 mL 2 mL 25 mcg/mL 0.3 mL 4 15 In-Vi
  • This HA sequence differs from the H1N1 HA antigen that will be used in the clinical study due to strain differences, but the modRNA was formulated with the same clinical LNP composition and provides supportive data for the platform.
  • BALB/c mice were immunized IM with 1 ⁇ g of the LNP-formulated influenza modRNA vaccine on Days 0 and 28.
  • ELISA of sera obtained on Days 28 and 49 showed high levels of HA-binding IgG.
  • Sera obtained as early as 14 days after the first dose had high neutralization titers against A/California/07/2009 influenza virus, and by Day 49 (21 days after the second dose) serum influenza neutralization titers exceeded 1 ⁇ 104.
  • IFN ⁇ ELISpot using splenocytes harvested on Day 49 and stimulated with antigen-specific peptides showed strong CD4+ and CD8+ T-cell responses.
  • mice received 2 IM immunizations with 1 ⁇ g of modRNA encoding influenza HA.
  • the T-cell response was analyzed using antigen-specific peptides to stimulate T cells recovered from the spleen. IFN ⁇ release was measured after peptide stimulation using an ELISpot assay.
  • the primary serological assay used to measure vaccine-induced immune responses to influenza is the hemagglutinin inhibition assay, or HAI.
  • the HAI quantitatively measures functional antibodies in serum that prevent HA-mediated agglutination of red blood cells in reactions containing receptor-destroying enzyme pretreated serum samples, influenza virus and red blood cells derived from turkey or guinea pig.
  • the HAI titer is the reciprocal of the highest serum dilution resulting in loss of HA activity, visualized as a teardrop shape when the microtiter plate is tilted. Titers from multiple determinations per sample are reported as geometric mean titers (GMT).
  • GTT geometric mean titers
  • a HAI titer of ⁇ 1:40 is generally accepted as protective in humans. HAI assays have been developed for each of the 4 influenza strains, A/Wisconsin/588/2019 (H1N1), A/Cambodia/e0826360/2020 (H3N2), B/Phuket/3073/2013 (B Yamagata) and B/Washington/02/2019 (B Victoria).
  • influenza virus microneutralization assay quantitatively measures functional antibodies in serum that neutralize influenza virus activity, preventing productive infection of a host cell monolayer.
  • a neutralization reaction occurs when influenza virus is incubated with serum samples; this reaction mixture is then applied to a monolayer of Madin- Darby Canine Kidney (MDCK) cells to measure the extent of neutralization.
  • MDCK Madin- Darby Canine Kidney
  • RNA pre-mixed drug substance
  • a “pre-mixed” drug substance refers to a composition wherein RNA expressing either HA or NA is mixed in a desired ratio, followed by a single formulation into an LNP.
  • a “post-mixed” drug product refers to a composition wherein each RNA expressing either HA or NA is encapsulated in an LNP and the resulting RNA- encapsulated LNPs are then mixed in a desired ratio.
  • HAI Hemagglutination-inhibition
  • RNA Dose -- 2 0.4 2 0.4 (ug) It was also observed that 50% Neutralizing Ab Titers Were Comparable Between Pre-Mix and Post-Mix Drug Product. See Tables 19-22 below. Table 20 at 3 weeks post-dose 1 (against Wisconsin) GMT 165 14319 9393 24043 5221 Sample: Saline bi-val. pre- bi-val. pre- bi-val. post- bi-val. post- mix. mix. mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) Table 21 at 2 weeks post-dose 2 (against Wisconsin) GMT 169 1286052 290731 1187870 278031 Sample: Saline bi-val. pre- bi-val. pre- bi-val.
  • RNA Dose -- 2 0.4 2 0.4 (ug) EXAMPLE 5 DESCRIPTION OF QUADRIVALENT DRUG PRODUCT
  • the quadrivalent drug product is a preservative-free, sterile dispersion of liquid nanoparticles (LNP) in aqueous cryoprotectant buffer for intramuscular administration.
  • the drug product is formulated at 0.1 mg/mL RNA in 10 mM Tris buffer, 300 mM sucrose, pH 7.4.
  • the drug product is supplied in a 2 mL glass vial sealed with a chlorobutyl rubber stopper and an aluminum seal with flip-off plastic cap (maximum nominal volume of 0.3 mL).
  • Table 28 Composition of Quadrivalent Drug Product Nominal Uni Filled Amount or N ame of Ingredient Grade/Quality t F unct Amount Net S tandard ion Formula (mg/mL) (Total Quantity mg/vial) (Net mg/vial) PF-07829855 Drug In-house Active Substance (Wisconsin) specification ingredient 0.025 0.013 0.008 PF-07836258 Drug In-house Active Substance (Cambodia) specification ingredient 0.025 0.013 0.008 PF-07836259 Drug In-house Active Substance (Phuket) specification ingredient 0.025 0.013 0.008 PF-07836261 Drug Substance In-house Active specificat 0.025 0.013 0.008 (Washington) ion ingredient A LC-0315a In-house Functional s pecification lipid 1.43 0.72 0.43 ALC-0159b In-house Functional s pecification lipid 0.18 0.09 0.05 DSPCc In-house Structural
  • ALC-0315 ((4-hydroxybutyl)azanediyl)bis(hexane-6,1-diyl)bis(2-hexyldecanoate) b.
  • ALC-0159 2-[(polyethylene glycol)-2000]-N,N-ditetradecylacetamide c.
  • DSPC 1,2-Distearoyl-sn-glycero-3-phosphocholine d. q.s. is an abbreviation for quantum satis meaning as much as is sufficient.
  • the recommended storage temperature of the FIH drug substance is -20 ⁇ 5°C.
  • the recommended long term storage temperature of the FIH drug product is -60 to -90°C.
  • the drug product may be stored at 2-8°C at Point of Use.
  • EXAMPLE 6 LNP Flu HA modRNA Quadrivalent Study The following example describes a study of LNP Flu HA modRNA Quadrivalent, in which mice were administered with different LNP_Flu HA modRNA materials as detailed in the table below. Sera collected at Day 21 post prime and at Day 42 (14 days post boost) were evaluated by serology testing (HAI, and neutralization).
  • H3N2 A/Cambodia Comparable 50% Neutralization Titers Between Pre-mix and Post-Mix were observed.
  • By/Phuket Comparable 50% Neutralization Titers Between Pre-mix and Post-Mix were observed.
  • Bv/Washington Comparable 50% Neutralization Titers Between Pre-mix and Post-Mix were also observed.
  • EXAMPLE 7 Immunogenicity Data in Mice of a Multivalent Influenza modRNA Vaccine, cont’d To evaluate the feasibility of a multivalent formulation of the modRNA influenza vaccine, modRNAs encoding 4 different HA proteins and 4 different neuraminidase (NA) proteins were generated.
  • mice vaccinated with LNP-formulated modRNA encoding a single strain-specific HA or NA were compared to groups vaccinated with an octavalent HA/NA modRNA formulation.
  • Octavalent formulation methods were compared by separately formulating each modRNA expressing HA or NA in LNPs and then mixing the eight LNPs together in equal ratios, or by pre-mixing the eight modRNAs followed by a single co- formulation in LNPs.
  • BALB/c mice were immunized IM with 2 ⁇ g of each HA and NA-expressing modRNA either as a monovalent or octavalent vaccine formulation in LNPs on Days 0 and 28.
  • mice of an octavalent HA/NA modRNA vaccine indicated no interference for influenza A strains and exhibited antibody responses for influenza B strains in comparison to monovalent control vaccines. These initial mouse immunogenicity data support the use of a multivalent modRNA formulation.
  • EXAMPLE 8 modRNA Flu Quadrivalent Feasibility Study This study was performed to evaluate the immunogenicity of a quadrivalent modRNA vaccine candidate encoding influenza hemagglutinin (HA) from the four strains recommended for the Northern Hemisphere 21-22 season (H1N1 A/Wisconsin/588/2019, H3N2 B/Cambodia/e0826360/2020, By/Phuket/3073/2013, Bv/Washington/02/2019) compared to a monovalent modRNA-HA vaccine of each strain. Historically, lower titers have been induced against the less immunogenic Flu B strains when mixed in a multivalent formulation.
  • HA hemagglutinin
  • An effective quadrivalent modRNA Influenza vaccine may potentially include an adjusted Flu B dose.
  • the purpose of this study was to evaluate the feasibility of a quadrivalent modRNA-HA influenza vaccine. The objectives were two-fold: 1) to compare the immunogenicity of a quadrivalent vs. monovalent modRNA formulation in mice to assess levels of interference and 2) to determine if altering the dose composition of Flu B can “rescue” any interference.
  • the influenza modRNA composition comprises up to 4 nucleoside-modified mRNAs that encodes the full-length hemagglutinin (HA) glycoprotein derived from a seasonal human influenza strain.
  • the modRNA is formulated with two functional and two structural lipids, which protect the modRNA from degradation and enable transfection of the modRNA into host cells after intramuscular (IM) injection.
  • IM intramuscular
  • the modRNA in the quadrivalent vaccine and the monovalent comparators studied herein encode HA proteins from the four strains recommended for the 2021-2022 Northern Hemisphere Influenza season.
  • mice were immunized on Days 0 and 28 with either a monovalent modRNA-HA vaccine for one of the four recommended strains or a quadrivalent composition.
  • Quadrivalent vaccines were mixed either as modRNA drug substances then coformulated into LNPs (pre-mix) or as LNPs after formulation of each drug substance (post-mix), as described in earlier Examples.
  • Increased relative Flu B doses were tested to determine optimal dose for the less immunogenic B strains. Serum was collected 21 days post prime and 14 days post boost. Anti-HA antibodies were measured by the Hemagglutination Inhibition Assay (HAI) and 1-day Microneutralization Assay (MNT) to determine immunogenicity. This study was designed with 17 groups as shown in Table 37, each containing a total of 10 female mice (strain of mice: Balb/c). The modRNA drug products were evaluated at 0.05 mL dose volume.
  • HAI was performed but overall titers were low except for H1N1 A/Wisconsin, which made data interpretation challenging and therefore will not be included in this report.
  • MNT titers were induced by all the vaccine groups against the four strains with a robust boosting effect at Day 42. Comparable MNT titers were elicited by the quadrivalent modRNA mixes compared to each monovalent modRNA encoding H1N1 A/Wisconsin HA and H3N2 A/Cambodia HA at Day 21 and Day 42 (FIG.1A-H). Minimal difference in titers was observed between the pre-mix and post-mix quadrivalent formulations, although post mix formulations generally trended slightly higher at Day 42.
  • H1N1 A/Wisconsin/588/2019, H3N2 A/Cambodia/ e0826360/2020, By/Phuket/3073/2013, Bv/Washington/02/2019 or a modRNA (pre) or LNP (post) quadrivalent mix.
  • MNT titers against H3N2 A/Cambodia, B/Phuket and B/Washington were lower than those against H1N1 A/Wisconsin, but a robust boost effect was observed for all four strains at two weeks after the second dose.
  • Modest interference was detected in the quadrivalent titers against both B strains. However, this interference was counteracted at the low dose when concentrations of the B modRNA-HA were increased to 2 or 4 times the Flu A H1/H3 concentration. Importantly, the immunogenicity against the A strains was maintained at these modified doses.
  • An effective quadrivalent modRNA Influenza vaccine may potentially include an adjusted Flu B dose.
  • EXAMPLE 9 IN VIVO MICE STUDY PRL-Flu-Ms-2022-40, Mice aged 10-13 weeks were immunized with monovalent, bivalent, trivalent, or quadrivalent LNP_Flu modRNA-encapsulated-in-LNP compositions. Sera collected at Day 21 post prime and at Day 42 (14 days post boost). There were 10 mice per group. Each mouse received a 50 ⁇ l / IM dose.
  • the dose volume and immunization route was 50 ul/IM, administered on day 0 and 28. Bleed occurred on day 21 and 42. Results following immunization according to Table 39 are shown below in Table 40 and Table 41.
  • Group 10 represents the trivalent modRNA HA-encapsulated LNP composition in Table 40 and Table 41.
  • GMT 1 refers to geometric mean titers 3 weeks post dose 1 against Bv/Austria
  • GMT2 refers to geometric mean titers 3 weeks post dose 1 against By/Phuket
  • GMT3 refers to geometric mean titers 2 weeks post dose 2 against Bv/Austria
  • GMT4 refers to geometric mean titers 2 weeks post dose 2 against By/Phuket
  • GMT5 refers to geometric mean titers 3 weeks post dose 1 against H1N1 A/Wisconsin
  • GMT6 refers to geometric mean titers 3 weeks post dose 1 against H1N1 A/Sydney
  • GMT7 refers to geometric mean titers 2 weeks post dose 2 against H1N1 A/Wisconsin
  • GMT8 refers to geometric mean titers 2 weeks post dose 2 against H1N1 A/Sydney
  • GMT9 refers to geometric mean titers 3 weeks post dose 1 against H3N2 A/Darwin GMT10 refers to geometric mean titers 3
  • GMT 13 refers to geometric mean titers 3 weeks post dose 1 against Bv/Austria
  • GMT14 refers to geometric mean titers 3 weeks post dose 1 against By/Phuket
  • GMT15 refers to geometric mean titers 2 weeks post dose 2 against Bv/Austria
  • GMT16 refers to geometric mean titers 2 weeks post dose 2 against By/Phuket
  • GMT17 refers to geometric mean titers 3 weeks post dose 1 against H1N1 A/Wisconsin
  • GMT18 refers to geometric mean titers 3 weeks post dose 1 against H1N1 A/Sydney
  • GMT19 refers to geometric mean titers 2 weeks post dose 2 against H1N1 A/Wisconsin
  • GMT20 refers to geometric mean titers 2 weeks post dose 2 against H1N1 A/Sydney
  • GMT21 refers to geometric mean titers 3 weeks post dose 1 against H3N2 A/Darwin
  • GMT22 refers to geometric mean tit
  • An exemplary 1:5 (A:B) quadrivalent (qIRV) Influenza drug product and 1:4 (A:B) trivalent (tIRV) Influenza drug product are described as follows.
  • the mRNA constituents are: 1. A/Wisconsin/67/2022 (H1N1) pdm09 -like virus (HA-Wisc/67) (tIRV and qIRV) 2. A/Darwin/6/2021 (H3N2) -like virus (HA-Darw) (tIRV and qIRV) 3. B/Austria/1359417/2021 (B/Victoria lineage) -like virus (HA-Aust) (tIRV and qIRV) 4.
  • EXAMPLE 10 IN VIVO IMMUNOGENICITY STUDY OF CO-FORMULATED mRNA and BLANK LNPs This study was conducted to compare the immunogenicity of co-formulated mRNA and blank LNPs (with N:P ratio of 6 for individual LNPs and increasing lipids concentrations in the formulation) with mRNA LNPs of higher N to P ratios (N:P ratio of 12 and 30 for individual LNPs).
  • the test articles are listed in Table 44, and further described analytically in Table 45, wherein ⁇ Endotoxin testing was conducted on unfrozen liquid formulations; 1Sample is equivalent to Group 5 and shares Endotoxin results; ND – Not determined, TBD – To be determined.
  • Each dose was 50 ul administered to mice via IM on days 0 and 28, according to the respective dose listed in Table 44.
  • Each group were composed of 10 Balb/c mice. The mice were bled at day 06hr, 1d, 21d, and 42d following administration. Group 6 is supplied frozen and will complete 1x F/T at the time of dose preparation. Both groups 5 and 6 will serve as a study control.
  • FIG.2A modRNA-HA titers were comparable when co-formulated with blank LNPs at high RNA concentrations. ⁇ 2-fold increase at low RNA concentration/dose with co-formulation of 5X blank LNPs was observed. Increasing N:P results in ⁇ 2-fold boost in titer compared to control. See FIG.2A.
  • mRNA-LNPs containing cholesterol analogues were formulated by combining an mRNA containing aqueous phase and a lipid containing organic phase using methods known in the art.
  • the organic phase was prepared by solubilizing a mixture of ionizable lipid, DSPC, PEG-lipid, cholesterol and cholesterol analogs at various ratios in ethanol.
  • the organic phase and aqueous phase were mixed at a flow rate ratio of 3:1 by syringe pumps.
  • the resulted solution was dialyzed against 10 mM Tris buffer (pH 7.4). Post- dialysis solution was concentrated and spiked with cryo-protectant to a final mRNA-LNP solution with RNA concentration of 0.1 mg/ml.
  • mice Immunogenicity in Balb/c mice was evaluated using Neutralization and HAI assays.
  • the test articles are listed in Table 46.
  • Each dose was 50 ul administered to mice via IM on days 0 and 28, according to the respective dose listed in Table 46.
  • Each formulation described throughout the Examples section herein comprises ALC- 0159 pegylated lipid at 1.8% molar percentage in the LNP formulation.
  • Each group were composed of 10 Balb/c mice. The mice were bled at day 21d and 42d following administration.
  • a formulation comprising sitosterol and cholesterol increased immunogenicity of modRNA-HA 11-fold at 0.2 ug dose. With an increased N/P ratio, titers were boosted 3-fold comparing to cholesterol-only control.
  • FIG.3B and FIG. 3C show the results 2 weeks post dose 2. 90% neutralization titers shown in FIG.4A and FIG. 4B follow a similar trend to 50% titers.
  • the objective of this Example was to assess in vitro expression (IVE) of hemagglutinin (HA) from lipid nanoparticles (LNPs) formulated with alternative cholesterols and compare this in vitro expression performance to LNPs formulated with novel cholesterols and/or N/P ratios.
  • This Example helped to inform whether or not changing certain cholesterols, and/or N/P ratios, can alter the in vitro expression of HA from an unmodified bi-cistronic saRNA encoding HA and NA of H1N1 A/Wisconsin, in HeLa cells.
  • An exemplary bicistronic saRNA encoding HA and NA include the sequence set forth in SEQ ID NO: 9.
  • Another exemplary bicistronic saRNA includes the sequence set forth in SEQ ID NO: 10. See, for example, International patent application PCT/IB2023/057034, published as WO2024/013625, entitled, “Self-amplifying rna encoding an influenza virus antigen,” (Pfizer Inc.) filed on July 7, 2023, which is incorporated by reference in its entirety and describes saRNA molecules and bicistronic saRNA.
  • Method An 11-point, 2-fold dilution of LNPs in HeLa cell cultures was performed. Geometric mean fluorescence intensity (GMFI) of HA positive cells, the percentage of total HA positive cells and cell viability was measured.
  • GMFI Geometric mean fluorescence intensity
  • HeLa cells were plated at a density of 2.0e5 cells per well in a 12-well plate.
  • the LPNs tested are provided in Table 47. Each LNP was tested in triplicate and measurements were made 22 hours post LNP-addition.
  • Table 47 LNP # Sterol N/P ratio 1 Cholesterol (benchmark) 6 2 B-Sitosterol/Cholesterol 6 (6:4) 3 Campesterol 6 4 Stigmasterol/Cholesterol 6 (1:1) 5 Stigmasterol/Cholesterol 10 (1:1)
  • the sterols tested in LNP 2 through 5 increased the percentage of cells expressing the antigen of interest (HA) as shown in FIG.5 (HeLa IVE).
  • the EC50s for LNP 2 through 5 were significantly lower than the EC 50 of the benchmark LNP comprising cholesterol (LNP 1) (Table 48).
  • the in vitro activity (IVA) of the cells treated with LNPs 2 through 5 was significantly higher than the activity of the cells treated with the benchmark LNP comprising cholesterol (LNP 1).
  • GMFI from HA staining was higher for all LNPs containing alternative sterols, with the b-Sitosterol/Cholesterol (6:4) LNP performing the best.
  • Cell viability was significantly lower for all LNPs containing alternative sterols, as compared to the benchmark LNP 1.
  • b-Sitosterol/Cholesterol (6:4) LNPs demonstrated the best relative ratio of live cells vs. % HA positive, though only slightly better than LNP 4 and 5.
  • EXAMPLE 13 In vitro expression of hemagglutinin (HA) from LNPs formulated with alternative cholesterols.
  • the objective of this Example was to assess in vitro expression (IVE) of GFP (reporter) from lipid nanoparticles (LNPs) formulated with alternative sterols and/or N/P ratios.
  • LNPs lipid nanoparticles
  • Each formulation described throughout the Examples section herein comprises ALC-0159 pegylated lipid at 1.8% molar percentage in the LNP formulation. Percentage of encapsulation efficiency (%EE, as used herein throughout), polydispersity index (PDI), and % of intact mRNA as measured by fragment analyzer (FA) are shown in Table 49.
  • HEK293T Human embryonic kidney cells are seeded on one to two 12-well culture plates per assay instance and transfected with control and drug product (DP) test samples across two assay instances. After 21-24 hours, cells are harvested from the 12-well plates and transferred to 96-well assay plates. The cells are stained with fixable aqua viability dye before being permeabilized and fixed. After the fixative is washed from the cells, a fluorophore-conjugated HA antibody cocktail is added which binds to influenza HA antigens.
  • DP control and drug product
  • the cells are then analyzed for HA expression via flow cytometry, which detects the fluorescent signal of the fluorophore conjugated to the strain-specific anti-HA antibodies.
  • the in-vitro expression of the HA antigen is determined from the average percent of viable, single cells bound with fluorophore-conjugated HA antibody.
  • NP6 and NP10 LNPs with FluB/Austria mod-HA had similar in DP analytics and IVE.
  • various sterol mix ratios are tested.
  • Each formulation described throughout the Examples section herein comprises ALC-0159 pegylated lipid at 1.8% molar percentage in the LNP formulation.
  • Table 51 F A DLS EE IVE Description % Integrity LMS Size (nm) % IVE % IVE EC50 C ells (ng/well) positive (125ng) ⁇ -Sitosterol 88 3 152 56 89 14 Campesterol 87 3 94 87 87 23 Fucosterol (Delta 5-avenasterol) 90 3 144 80 94 15 Stigmastanol (sitostanol) NT NT 124 36 NT NT Stigmasterol NT NT 82 7 NT NT CholPC NT NT 110 17 NT NT Cholesterol 88 3 77 94 50 131 See also Table 52 for data showing IVE of various sterol combinations, wherein the LNP encapsulated RMM72 NA/Wisconsin modRNA.
  • the sterol comprises Cholesterol : ⁇ -Sitosterol 4:6 LNP.
  • Table 52 Description FA DLS IVE % Integrity LMS Size by DLS, %Positive @ IVE EC50 Z -Ave(nm) EE% 125ng (ng/well) Cholesterol : ⁇ -Sitosterol 0 :1 90 2 150 45 93 11 Cholesterol : ⁇ -Sitosterol 1 :9 87 4 176 45 95 8 Cholesterol : ⁇ -Sitosterol 2 :8 89 2 159 47 85 32 Cholesterol : ⁇ -Sitosterol 3 :7 88 3 116 76 83 28 Cholesterol : ⁇ -Sitosterol 4 :6 92 1 91 89 94 8 Cholesterol : ⁇ -Sitosterol 1 0:0 91 2 91 86 83 63 LNP encapsulated HA
  • An influenza virus vaccine comprising: at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, formulated in a lipid nanoparticle.
  • RNA ribonucleic acid
  • the influenza vaccine of clause 2, wherein the 5’ cap analog comprises m 2 7,3’-O Gppp(m 1 2’- O )ApG.
  • the RNA further comprises a modified nucleotide.
  • the modified nucleotide comprises N1- Methylpseudourodine-5’-triphosphate (m1 ⁇ TP).
  • influenza vaccine of clause 1 wherein the at least one antigenic polypeptide is influenza hemagglutinin 1 (HA1), hemagglutinin 2 (HA2), an immunogenic fragment of HA1 or HA2, or a combination of any two or more of the foregoing.
  • at least one antigenic polypeptide is HA1, HA2, or a combination of HA1 and HA2, and at least one antigenic polypeptide is selected from the group consisting of neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non-structural protein 2 (NS2).
  • the composition comprises a) at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding influenza hemagglutinin 1 (HA1); b) at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding hemagglutinin 2 (HA2); c) at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one antigenic polypeptide is selected from the group consisting of neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non-structural protein 2 (NS2); and d
  • influenza vaccine according to clause 5 wherein the open reading frame is codon- optimized.
  • the composition further comprises a cationic lipid.
  • the composition comprises a lipid nanoparticle encompassing the mRNA molecule.
  • the influenza vaccine of clause 1, wherein the composition comprises a) a lipid nanoparticle encompassing at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding influenza hemagglutinin 1 (HA1); b) a lipid nanoparticle encompassing at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding hemagglutinin 2 (HA2); c) a lipid nanoparticle encompassing at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one antigenic polypeptide is selected from the group consisting of neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non- structural protein 2 (NS2); and d) a lipid nanoparticle encompassing at least one ribonucleic acid (RNA) polynucleot
  • the influenza vaccine of clause 13, wherein the lipid nanoparticle size is at least 40 nm. 15. The influenza vaccine of clause 13, wherein the lipid nanoparticle size is at most 180 nm. 16. The influenza vaccine of clause 13, wherein at least 80% of the total RNA in the composition is encapsulated. 17. The influenza vaccine of clause 1, wherein the composition comprises 18. The influenza vaccine of clause 1, wherein the composition comprises ALC-0315 (4- hydroxybutyl)azanediyl)bis(hexane-6,1-diyl)bis(2-hexyldecanoate). 19. The influenza vaccine of clause 1, wherein the composition comprises ALC-0159 (2- [(polyethylene glycol)-2000]-N,N-ditetradecylacetamide). 20.
  • the influenza vaccine of clause 1, wherein the composition comprises 1,2- Distearoyl-sn- glycero-3-phosphocholine (DSPC). 21. The influenza vaccine of clause 1, wherein the composition comprises cholesterol. 22. The influenza vaccine of clause 1, wherein the composition comprises 0.9-1.85 mg/mL ALC- 0315; 0.11-0.24 mg/mL ALC-0159; 0.18 – 0.41 mg/mL DSPC; and 0.36 – 0.78 mg/mL cholesterol. 23. The influenza vaccine of clause 1, wherein the composition comprises Tris. 24. The influenza vaccine of clause 1, wherein the composition comprises sucrose. 25. The influenza vaccine of clause 1, wherein the composition does not further comprise sodium chloride. 26. The influenza vaccine of clause 1, wherein the composition comprises 10 mM Tris.
  • the influenza vaccine of clause 1 wherein the composition comprises 300 mM sucrose. 28. The influenza vaccine of clause 1, wherein the composition has a pH 7.4. 29. The influenza vaccine of clause 1, wherein the composition has less than or equal to 12.5 EU/mL of bacterial endotoxins. 30. The influenza vaccine of clause 1, wherein the RNA polynucleotide comprises a 5’ cap, 5’ UTR, 3’ UTR, histone stem-loop and poly-A tail. 31. The influenza vaccine of clause 30, wherein the 5’ UTR comprises the sequence AATAAACTAGTATTCTTCTGGTCCCCACAGACTCAGAGAGAACCC (5’ WHO UTR1) (SEQ ID No: 4). 32.
  • the influenza vaccine of clause 30, wherein the 5’ UTR comprises the sequence GAGAA ⁇ AAAC ⁇ AG ⁇ A ⁇ C ⁇ C ⁇ GG ⁇ CCCCA CAGAC ⁇ CAGA GAGAACCCGCCACC (SEQ ID NO: 5) 33.
  • the influenza vaccine of clause 30, wherein the 5’ UTR comprises the sequence AGAATAAACTAGTATTCTTCTGGTCCCCACAGACTCAGAGAGAACCC (5’ WHO UTR1). (SEQ ID NO: 6) 34.
  • the influenza vaccine of clause 30, wherein the 3’ UTR comprises the sequence CUCGAGCUGGUACUGCAUGCACGCAAUGCUAGCUGCCCCUUUCCCGUCCUGGGUAC CCCGAGUCUCCCCCGACCUCGGGUCCCAGGUAUGCUCCCACCUCCACCUGCCCCAC UCACCACCUCUGCUAGUUCCAGACACCUCCCAAGCACGCAGCAAUGCAGCUCAAAAC GCUUAGCCUAGCCACACCCCCACGGGAAACAGCAGUGAUUAACCUUUAGCAAUAAAC GAAAGUUUAACUAAGCUAUACUAACCCCAGGGUUGGUCAAUUUCGUGCCAGCCACAC CCUGGAGCUAGC (3’ WHO UTR2).
  • the influenza vaccine of clause 30, wherein the 3’ UTR comprises the sequence C ⁇ CGAGC ⁇ GG ⁇ AC ⁇ GCA ⁇ GCACGCAA ⁇ GC ⁇ AGC ⁇ GCCCC ⁇ CCCG ⁇ CC ⁇ G GG ⁇ ACCCCGAG ⁇ C ⁇ CCCCCGACC ⁇ CGGG ⁇ CCCAGG ⁇ A ⁇ GC ⁇ CCCACC ⁇ CCAC C ⁇ GCCCCAC ⁇ CACCACC ⁇ C ⁇ GC ⁇ AG ⁇ CCAGACACC ⁇ CCCAAGCACGCAGCAA ⁇ GCAGC ⁇ CAAAACGC ⁇ AGCC ⁇ AGCCACACCCCCACGGGAAACAGCAG ⁇ GA ⁇ AACC ⁇ AGCAA ⁇ AAACGAAAG ⁇ AAC ⁇ AAGC ⁇ A ⁇ AC ⁇ AACCCCAGGG ⁇ GG ⁇ CAA ⁇ CG ⁇ GCCAGCCACACCC ⁇ GGAGC ⁇ AGC (3’ WHO ⁇ TR2).(SEQ ID NO: 8).
  • An immunogenic composition comprising: (i) a first ribonucleic acid (RNA) polynucleotide having an open reading frame encoding a first antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, and (ii) a second RNA polynucleotide having an open reading frame encoding a second antigen, said second antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the first and second RNA polynucleotides are formulated in a lipid nanoparticle (LNP).
  • LNP lipid nanoparticle
  • the immunogenic composition of any preceding clause further comprising: (iii) a third antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the third antigen is from influenza virus but is from a different strain of influenza virus to both the first and second antigens.
  • the immunogenic composition of clause 40 wherein the first, second and third RNA polynucleotides are formulated in a lipid nanoparticle.
  • the immunogenic composition of clause 41 wherein the first, second and third RNA polynucleotides are formulated in a single lipid nanoparticle.
  • the immunogenic composition of any preceding clause further comprising: (iv) a fourth RNA polynucleotide having an open reading frame encoding a fourth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fourth antigen is from influenza virus but is from a different strain of influenza virus to the first, second and third antigens.
  • the immunogenic composition of clause 43 wherein the first, second, third, and fourth RNA polynucleotides are formulated in a lipid nanoparticle.
  • the immunogenic composition of clause 44 wherein the first, second, third, and fourth RNA polynucleotides are formulated in a single lipid nanoparticle.
  • 46. The immunogenic composition of any preceding clause further comprising: (v) a fifth RNA polynucleotide having an open reading frame encoding a fifth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fifth antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, and fourth antigens. 47.
  • the immunogenic composition of any preceding clause further comprising: (vi) a sixth RNA polynucleotide having an open reading frame encoding a sixth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the sixth antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, fourth, and fifth antigens. 50.
  • the immunogenic composition of clause 49 wherein the first, second, third, fourth, and fifth RNA polynucleotides are formulated in a lipid nanoparticle.
  • 51. The immunogenic composition of clause 50, wherein the first, second, third, fourth, and fifth RNA polynucleotides are formulated in a single lipid nanoparticle.
  • 52. The immunogenic composition of any preceding clause further comprising: (vii) a seventh RNA polynucleotide having an open reading frame encoding a seventh antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the seventh antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, fourth, fifth, and sixth antigens.
  • the immunogenic composition of any preceding clause further comprising: (viii) an eighth RNA polynucleotide having an open reading frame encoding an eighth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the eighth antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, fourth, fifth, sixth and seventh antigens.
  • RNA polynucleotide having an open reading frame encoding a fifth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fifth antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, and fourth antigens.
  • RNA polynucleotide comprises a modified nucleotide.
  • the immunogenic composition of clause 61, wherein the modified nucleotide is selected from the group consisting of pseudouridine, 1-methylpseudouridine, 2-thiouridine, 4′- thiouridine, 5-methylcytosine, 2-thio-1-methyl-1-deaza-pseudouridine, 2-thio-1-methyl- pseudouridine, 2-thio-5-aza-uridine, 2-thio-dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4-methoxy-2-thio-pseudouridine, 4-methoxy-pseudouridine, 4-thio- 1-methyl-pseudouridine, 4-thio-pseudouridine, 5-aza-uridine, dihydropseudouridine, 5- methoxyuridine, and 2′-O-methyl uridine.
  • pseudouridine 1-methylpseudouridine
  • 2-thiouridine 4′- thiouridine
  • each RNA polynucleotide comprises a 5′ terminal cap, a 5’ UTR, a 3’UTR, and a 3′ polyadenylation tail.
  • the immunogenic composition of clause 63, wherein the 5′ terminal cap comprises: .
  • 65. the 5’ UTR comprises SEQ ID NO: 1.
  • the immunogenic composition of clause 63, wherein the 3’ UTR comprises SEQ ID NO: 2.
  • the immunogenic composition of clause 63, wherein the 3′ polyadenylation tail comprises SEQ ID NO: 3.
  • the immunogenic composition of any preceding clause, wherein the RNA polynucleotide has an integrity greater than 85%. 69.
  • RNA polynucleotide has a purity of greater than 85%.
  • the lipid nanoparticle comprises 20-60 mol % ionizable cationic lipid, 5-25 mol % neutral lipid, 25-55 mol % cholesterol, and 0.5-5 mol % PEG-modified lipid.
  • the cationic lipid comprises: .
  • the PEG-modified lipid comprises: . 73.
  • the first antigen is HA from influenza A subtype H1 or an immunogenic fragment or variant thereof and the second antigen is HA from a different H1 strain to the first antigen or an immunogenic fragment or variant thereof.
  • the immunogenic composition of any preceding clause wherein the first and second antigens are HA from influenza A subtype H1 or an immunogenic fragment or variant thereof and the third and fourth antigens are from influenza A subtype H3 or an immunogenic fragment or variant thereof and wherein the first and second antigens are derived from different strains of H1 virus and the third and fourth antigens are from different strains of H3 influenza virus.
  • the first and second RNA polynucleotides are formulated in a single lipid nanoparticle.
  • the immunogenic composition of any preceding clause wherein the first, second, and third RNA polynucleotides are formulated in a single lipid nanoparticle. 79. The immunogenic composition of any preceding clause, wherein the first, second, third, and fourth RNA polynucleotides are formulated in a single LNP. 80. The immunogenic composition of any one of clauses 36-75, wherein each of the RNA polynucleotides is formulated in a single LNP, wherein each single LNP encapsulates the RNA polynucleotide encoding one antigen. 81.
  • the immunogenic composition of clause 80 wherein the first RNA polynucleotide is formulated in a first LNP; and the second RNA polynucleotide is formulated in a second LNP.
  • the immunogenic composition of clause 80 wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; and the third RNA polynucleotide is formulated in a third LNP.
  • the immunogenic composition of clause 80 wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; and the fourth RNA polynucleotide is formulated in a fourth LNP. 84.
  • the immunogenic composition of clause 80 wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; and the fifth RNA polynucleotide is formulated in a fifth LNP.
  • the first RNA polynucleotide is formulated in a first LNP
  • the second RNA polynucleotide is formulated in a second LNP
  • the third RNA polynucleotide is formulated in a third LNP
  • the fourth RNA polynucleotide is formulated in a fourth LNP
  • the fifth RNA polynucleotide is formulated in a fifth LNP.
  • the immunogenic composition of clause 80 wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; the fifth RNA polynucleotide is formulated in a fifth LNP; and the sixth RNA polynucleotide is formulated in a sixth LNP.
  • the first RNA polynucleotide is formulated in a first LNP
  • the second RNA polynucleotide is formulated in a second LNP
  • the third RNA polynucleotide is formulated in a third LNP
  • the fourth RNA polynucleotide is formulated in a fourth LNP
  • the fifth RNA polynucleotide is formulated in a fifth LNP
  • the immunogenic composition of clause 80 wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; the fifth RNA polynucleotide is formulated in a fifth LNP; the sixth RNA polynucleotide is formulated in a sixth LNP; and the seventh RNA polynucleotide is formulated in a seventh LNP. 87.
  • the immunogenic composition of clause 80 wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; the fifth RNA polynucleotide is formulated in a fifth LNP; the sixth RNA polynucleotide is formulated in a sixth LNP; the seventh RNA polynucleotide is formulated in a seventh LNP; and the eighth RNA polynucleotide is formulated in an eighth LNP. 88.
  • the immunogenic composition of any preceding clause for use in the eliciting an immune response against influenza.
  • a method of eliciting an immune response against influenza disease comprising administering an effective amount of an immunogenic composition according to any one of clauses 36-79.
  • 90. A method of purifying an RNA polynucleotide synthesized by in vitro transcription, comprising ultrafiltration and diafiltration. 91. The method according to clause 90, wherein the method does not comprise a chromatography step. 92.
  • RNA polynucleotide is substantially free of contaminants comprising short abortive RNA species, long abortive RNA species, double- stranded RNA (dsRNA), residual plasmid DNA, residual in vitro transcription enzymes, residual solvent and/or residual salt.
  • the residual plasmid DNA is ⁇ 500 ng DNA/mg RNA.
  • purity of the purified mRNA is between about 60% and about 100%.
  • the method according to clause 90 further comprising encapsulating the RNA polynucleotide in a lipid nanoparticle.
  • the LNPs are buffer exchanged and concentrated via flat sheet cassette membranes.

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Abstract

The invention relates to compositions and methods for the preparation, manufacture and therapeutic use ribonucleic acid vaccines comprising polynucleotide molecules encoding one or more influenza antigens, such as hemagglutinin antigens.

Description

PC072956A IMMUNOGENIC COMPOSITION AGAINST INFLUENZA CROSS-REFERENCE TO APPLICATIONS This application claims the benefit of U.S. provisional application No.63/484,748, filed on February 13, 2023, U.S. provisional application No.63/501,393, filed on May 10, 2023, U.S. provisional application No.63/585,956, filed on September 27, 2023, U.S. provisional application No.63/588,688, filed on October 6, 2023, and U.S. provisional application No. 63/618,896, filed on January 8, 2024, each of which is incorporated by reference herein in its entirety. FIELD The invention relates to compositions and methods for the preparation, manufacture and therapeutic use of ribonucleic acid vaccines comprising polynucleotide molecules encoding one or more influenza antigens, such as hemagglutinin antigens. BACKGROUND Influenza viruses are members of the orthomyxoviridae family, and are classified into three types (A, B, and C), based on antigenic differences between their nucleoprotein (NP) and matrix (M) protein. The genome of influenza A virus includes eight molecules (seven for influenza C virus) of linear, negative polarity, single-stranded RNAs, which encode several polypeptides including: the RNA-directed RNA polymerase proteins (PB2, PB1 and PA) and nucleoprotein (NP), which form the nucleocapsid; the matrix proteins (M1, M2, which is also a surface-exposed protein embedded in the virus membrane); two surface glycoproteins, which project from the lipoprotein envelope: hemagglutinin (HA) and neuraminidase (NA); and nonstructural proteins (NS1 and NS2). Hemagglutinin is the major envelope glycoprotein of influenza A and B viruses, and hemagglutinin-esterase (HE) of influenza C viruses is a protein homologous to HA. A challenge for therapy and prophylaxis against influenza and other infections using traditional vaccines is the limitation of vaccines in breadth, providing protection only against closely related subtypes. In addition, the length of time required to complete current standard influenza virus vaccine production processes inhibits the rapid development and production of an adapted vaccine in a pandemic situation. There is a need for improved compositions, preferably immunogenic compositions, against influenza. SUMMARY The unmet needs for improved compositions, preferably immunogenic compositions, against influenza, among other things, are provided herein. In one aspect, the disclosure relates to an immunogenic composition including: (i) a first ribonucleic acid (RNA) polynucleotide having an open reading frame encoding a first antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, and (ii) a second RNA polynucleotide having an open reading frame encoding a second antigen, said second antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the first and second RNA polynucleotides are formulated in a lipid nanoparticle (LNP). In some embodiments, the first and second antigens include hemagglutinin (HA), or an immunogenic fragment or variant thereof. In some embodiments, the first antigen includes an HA from a different subtype of influenza virus to the influenza virus antigenic polypeptide or an immunogenic fragment thereof of the second antigen. In some embodiments, the composition further includes (iii) a third antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the third antigen is from influenza virus but is from a different strain of influenza virus to both the first and second antigens. In some embodiments, the first, second and third RNA polynucleotides are formulated in a lipid nanoparticle. In some embodiments, the composition further includes (iv) a fourth RNA polynucleotide having an open reading frame encoding a fourth antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fourth antigen is from influenza virus but is from a different strain of influenza virus to the first, second and third antigens. In some embodiments, the first, second, third, and fourth RNA polynucleotides are formulated in a lipid nanoparticle. In some embodiments, each RNA polynucleotide includes a modified nucleotide. In some embodiments, the modified nucleotide is selected from the group consisting of pseudouridine, 1-methylpseudouridine, 2-thiouridine, 4′-thiouridine, 5-methylcytosine, 2-thio-1- methyl-1-deaza-pseudouridine, 2-thio-1-methyl-pseudouridine, 2-thio-5-aza-uridine, 2-thio- dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4-methoxy-2-thio- pseudouridine, 4-methoxy-pseudouridine, 4-thio-1-methyl-pseudouridine, 4-thio-pseudouridine, 5-aza-uridine, dihydropseudouridine, 5-methoxyuridine, and 2′-O-methyl uridine. In some embodiments, each RNA polynucleotide includes a 5′ terminal cap, a 5’ UTR, a 3’UTR, and a 3′ polyadenylation tail. In some embodiments, the 5′ terminal cap includes: . In some embodiments, the 5’ UTR
Figure imgf000004_0001
3’ UTR includes SEQ ID NO: 2. In some embodiments, the 3′ polyadenylation tail includes SEQ ID NO: 3. In some embodiments, the RNA polynucleotide has an integrity greater than 85%. In some embodiments, the RNA polynucleotide has a purity of greater than 85%. In some embodiments, the lipid nanoparticle includes 20-60 mol % ionizable cationic lipid, 5-25 mol % neutral lipid, 25-55 mol % cholesterol, and 0.5-5 mol % PEG-modified lipid. In some embodiments, the cationic lipid includes: . In
Figure imgf000005_0001
.
Figure imgf000005_0002
In some embodiments, the first antigen is HA from influenza A subtype H1 or an immunogenic fragment or variant thereof and the second antigen is HA from a different H1 strain to the first antigen or an immunogenic fragment or variant thereof. In some embodiments, the first and second antigens are HA from influenza A subtype H3 or an immunogenic fragment or variant thereof and wherein both antigens are derived from different strains of H3 influenza virus. In some embodiments, the first and second antigens are HA from influenza A subtype H1 or an immunogenic fragment or variant thereof and the third and fourth antigens are from influenza A subtype H3 or an immunogenic fragment or variant thereof and wherein the first and second antigens are derived from different strains of H1 virus and the third and fourth antigens are from different strains of H3 influenza virus. In some embodiments, at least the first and second RNA polynucleotides are formulated in a single lipid nanoparticle. In some embodiments, the first and second RNA polynucleotides are formulated in a single lipid nanoparticle. In some embodiments, the first, second, and third RNA polynucleotides are formulated in a single lipid nanoparticle. In some embodiments, the first, second, third, and fourth RNA polynucleotides are formulated in a single LNP. In some embodiments, each of the RNA polynucleotides is formulated in a single LNP, wherein each single LNP encapsulates the RNA polynucleotide encoding one antigen. In some embodiments, the first RNA polynucleotide is formulated in a first LNP; and the second RNA polynucleotide is formulated in a second LNP. In some embodiments, the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; and the third RNA polynucleotide is formulated in a third LNP. In some embodiments, the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; and the fourth RNA polynucleotide is formulated in a fourth LNP. In another aspect, the disclosure relates to any of the immunogenic compositions described herein, for use in the eliciting an immune response against influenza. In another aspect, the disclosure relates to a method of eliciting an immune response against influenza disease, including administering an effective amount of any of the immunogenic compositions described herein. In another aspect, the disclosure relates to a method of purifying an RNA polynucleotide synthesized by in vitro transcription. The method includes ultrafiltration and diafiltration. In some embodiments, the method does not comprise a chromatography step. In some embodiments, the purified RNA polynucleotide is substantially free of contaminants comprising short abortive RNA species, long abortive RNA species, double- stranded RNA (dsRNA), residual plasmid DNA, residual in vitro transcription enzymes, residual solvent and/or residual salt. In some embodiments, the residual plasmid DNA is ≤ 500 ng DNA/mg RNA. In some embodiments, the yield of the purified mRNA is about 70% to about 99%. In some embodiments, purity of the purified mRNA is between about 60% and about 100%. In some embodiments, purity of the purified mRNA is between about 85%-95%. DESCRIPTION OF THE DRAWINGS The following drawings form part of the present specification and are included to further demonstrate certain aspects of the present invention. The invention may be better understood by reference to one or more of these drawings in combination with the detailed description of specific embodiments presented herein. FIG.1A-H. Functional Anti-HA Antibodies Elicited by Immunization of Mice With Monovalent or Quadrivalent LNP-Formulated modRNA Encoding Influenza HA as Measured By MNT. FIG.1A depicts 50% neutralization titers 3 weeks post prime (against A/H1N1); FIG.1B depicts 50% neutralization titers 2 weeks post boost (against A/H1N1); FIG.1C depicts 50% neutralization titers 3 weeks post prime (against A/H3N2); FIG.1D depicts 50% neutralization titers 2 weeks post boost (against A/H3N2); FIG.1E depicts 50% neutralization titers 3 weeks post prime (against B/Yamagata); FIG.1F depicts 50% neutralization titers 2 weeks post boost (against B/Yamagata); FIG.1G depicts 50% neutralization titers 3 weeks post prime (against B/Victoria); FIG.1H depicts 50% neutralization titers 2 weeks post boost (against B/Victoria). FIG.2A-B. FIG.2A depicts 50% neutralization titers 3 weeks post dose 1 against Wisconsin strain; FIG.2B depicts 50% neutralization titers 2 weeks post dose 2 against Wisconsin. FIG.3A-C. FIG.3A depicts 50% neutralization titers 3 weeks post dose 1 against B/Austria; FIG.3B depicts 50% neutralization titers 2 weeks post dose 2 (0.2 ug dose). FIG.3C depicts 50% neutralization titers 2 weeks post dose 2 (0.05 ug dose). FIG.4A-B. FIG.4A depicts 90% neutralization titers 3 weeks post dose 1 against B/Austria; FIG.4B depicts 90% neutralization titers 2 weeks post dose 1 against B/Austria. FIG.5 depicts percentage of HA positive cells following testing with 5 different LNP formulations, listed in Table 48. FIG.6 depicts GMFI: HA-positive cells following testing with 5 different LNP formulations, listed in Table 48. FIG.7 depicts percentage of live cells following testing with 5 different LNP formulations, listed in Table 48. FIG.8 depicts percentage of live cells following testing with 5 different LNP formulations, listed in Table 48. FIG.9A-B. FIG.9A depicts a comparison of LNPs having an N:P ratio of 10, LNPs having an N:P ratio of 6, and their respective fold change (EC50cholesterol/EC50cholesterol analog) compared to benchmark LNPs; FIG.9B depicts a comparison of LNPs having an N:P ratio of 10, LNPs having an N:P ratio of 6, and their respective fold change (MFIcholesterol analog/MFIcholesterol). FIG.10A-B. FIG.10A depicts a comparison of LNPs having sitosterol/cholesterol in a respective 6:4 ratio, LNPs having sitosterol/cholesterol in a respective 5:5 ratio, and LNPs having sitosterol/cholesterol in a respective 4:6 ratio, and their respective fold change (EC50cholesterol/EC50cholesterol analog) compared to benchmark LNPs; FIG.10B depicts a comparison of LNPs having an N:P ratio of 10, LNPs having an N:P ratio of 6, and their respective fold change (MFIcholesterol analog/MFIcholesterol). DETAILED DESCRIPTION Embodiments of the present disclosure provide RNA (e.g., mRNA) vaccines that include polynucleotide encoding an influenza virus antigen. Influenza virus RNA vaccines, as provided herein may be used to induce a balanced immune response, comprising both cellular and humoral immunity, without many of the risks associated with DNA vaccination. In some embodiments, the virus is a strain of Influenza A or Influenza B or combinations thereof. In one aspect, the disclosure relates to an immunogenic composition including: (i) a first ribonucleic acid (RNA) polynucleotide having an open reading frame encoding a first antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, and (ii) a second RNA polynucleotide having an open reading frame encoding a second antigen, said second antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the first and second RNA polynucleotides are formulated in a lipid nanoparticle (LNP). In some embodiments, the first and second antigens include hemagglutinin (HA), or an immunogenic fragment or variant thereof. In some embodiments, the first antigen includes an HA from a different subtype of influenza virus to the influenza virus antigenic polypeptide or an immunogenic fragment thereof of the second antigen. In some embodiments, the composition further includes (iii) a third antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the third antigen is from influenza virus but is from a different strain of influenza virus to both the first and second antigens. In some embodiments, the first, second and third RNA polynucleotides are formulated in a lipid nanoparticle. In some embodiments, the composition further includes (iv) a fourth RNA polynucleotide having an open reading frame encoding a fourth antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fourth antigen is from influenza virus but is from a different strain of influenza virus to the first, second and third antigens. In some embodiments, the first, second, third, and fourth RNA polynucleotides are formulated in a lipid nanoparticle. In some embodiments, the RNA polynucleotides are mixed in desired ratios in a single vessel and are subsequently formulated into lipid nanoparticles. The inventors surprisingly discovered that the initial input of different RNA polynucleotides at a known ratio to be formulated in a single LNP process surprisingly resulted in LNPs encapsulating the different RNA polynucleotides in about the same ratio as the input ratio. The results were surprising in view of the potential for the manufacturing process to favor one RNA polynucleotide to another when encapsulating the RNA polynucleotides into an LNP. Such embodiments may be referred herein as "pre-mix". Accordingly, in some embodiments, first and second RNA polynucleotides are formulated in a single lipid nanoparticle. In some embodiments, the first, second, third, and fourth RNA polynucleotides are formulated in a single LNP. In some embodiments, the first, second, third, fourth, and fifth RNA polynucleotides are formulated in a single LNP. In some embodiments, the first, second, third, fourth, fifth, and sixth RNA polynucleotides are formulated in a single LNP. In some embodiments, the first, second, third, fourth, fifth, sixth, and seventh RNA polynucleotides are formulated in a single LNP. In some embodiments, the first, second, third, fourth, fifth, sixth, seventh, and eighth RNA polynucleotides are formulated in a single LNP. In some embodiments, the molar ratio of the first RNA polynucleotide to the second RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first RNA polynucleotide to the second RNA polynucleotide is greater than 1:1. In some embodiments, the molar ratio of the first RNA polynucleotide to the third RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first RNA polynucleotide to the third RNA polynucleotide is greater than 1:1. In some embodiments, the molar ratio of the first RNA polynucleotide to the fourth RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first RNA polynucleotide to the fourth RNA polynucleotide is greater than 1:1. In some embodiments, the molar ratio of the first RNA polynucleotide to the fifth RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first RNA polynucleotide to the fifth RNA polynucleotide is greater than 1:1. In some embodiments, the molar ratio of the first RNA polynucleotide to the sixth RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first RNA polynucleotide to the sixth RNA polynucleotide is greater than 1:1. In some embodiments, the molar ratio of the first RNA polynucleotide to the seventh RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first RNA polynucleotide to the seventh RNA polynucleotide is greater than 1:1. In some embodiments, the molar ratio of the first RNA polynucleotide to the eighth RNA polynucleotide in the mix of RNA polynucleotides prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first RNA polynucleotide to the eighth RNA polynucleotide is greater than 1:1. Self-amplifying RNA (saRNA) In some embodiments, the RNA molecule, such as the first RNA molecule, is an saRNA. “saRNA,” “self-amplifying RNA,” and “replicon” refer to RNA with the ability to replicate itself. Self- amplifying RNA molecules may be produced by using replication elements derived from a virus or viruses, e.g., alphaviruses, and substituting the structural viral polypeptides with a nucleotide sequence encoding a polypeptide of interest. A self-amplifying RNA molecule is typically a positive-strand molecule that may be directly translated after delivery to a cell, and this translation provides an RNA-dependent RNA polymerase which then produces both antisense and sense transcripts from the delivered RNA. The delivered RNA leads to the production of multiple daughter RNAs. These daughter RNAs, as well as collinear subgenomic transcripts, may be translated themselves to provide in situ expression of an encoded gene of interest, e.g., a viral antigen, or may be transcribed to provide further transcripts with the same sense as the delivered RNA which are translated to provide in situ expression of the protein of interest, e.g., an antigen. The overall result of this sequence of transcriptions is an amplification in the number of the introduced saRNAs and so the encoded gene of interest, e.g., a viral antigen, can become a major polypeptide product of the cells. In some embodiments, the self-amplifying RNA includes at least one or more genes selected from any one of viral replicases, viral proteases, viral helicases and other nonstructural viral proteins. In some embodiments, the self-amplifying RNA may also include 5'- and 3 '-end tractive replication sequences, and optionally a heterologous sequence that encodes a desired amino acid sequence (e.g., an antigen of interest). A subgenomic promoter that directs expression of the heterologous sequence may be included in the self-amplifying RNA. Optionally, the heterologous sequence (e.g., an antigen of interest) may be fused in frame to other coding regions in the self-amplifying RNA and/or may be under the control of an internal ribosome entry site (IRES). In some embodiments, the self-amplifying RNA molecule is not encapsulated in a virus- like particle. Self-amplifying RNA molecules described herein may be designed so that the self- amplifying RNA molecule cannot induce production of infectious viral particles. This may be achieved, for example, by omitting one or more viral genes encoding structural proteins that are necessary to produce viral particles in the self-amplifying RNA. For example, when the self- amplifying RNA molecule is based on an alphavirus, such as Sinbis virus (SIN), Semliki forest virus and Venezuelan equine encephalitis virus (VEE), one or more genes encoding viral structural proteins, such as capsid and/or envelope glycoproteins, may be omitted. In some embodiments, a self-amplifying RNA molecule described herein encodes (i) an RNA- dependent RNA polymerase that may transcribe RNA from the self-amplifying RNA molecule and (ii) a polypeptide of interest, e.g., a viral antigen. In some embodiments, the polymerase may be an alphavirus replicase, e.g., including any one of alphavirus protein nsP1, nsP2, nsP3, nsP4, and any combination thereof. In some embodiments, the self-amplifying RNA molecules described herein may include one or more modified nucleotides (e.g., pseudouridine, N6-methyladenosine, 5- methylcytidine, 5-methyluridine). In some embodiments, the self- amplifying RNA molecules does not include a modified nucleotide (e.g., pseudouridine, N6- methyladenosine, 5- methylcytidine, 5-methyluridine). The saRNA construct may encode at least one non-structural protein (NSP), disposed 5’ or 3’ of the sequence encoding at least one peptide or polypeptide of interest. In some embodiments, the sequence encoding at least one NSP is disposed 5’ of the sequences encoding the peptide or polypeptide of interest. Thus, the sequence encoding at least one NSP may be disposed at the 5’ end of the RNA construct. In some embodiments, at least one non-structural protein encoded by the RNA construct may be the RNA polymerase nsP4. In some embodiments, the saRNA construct encodes nsP1, nsP2, nsP3 and, nsP4. As is known in the art, nsP1 is the viral capping enzyme and membrane anchor of the replication complex (RC). nsP2 is an RNA helicase and the protease responsible for the ns polyprotein processing. nsP3 interacts with several host proteins and may modulate protein poly- and mono-ADP-ribosylation. nsP4 is the core viral RNA-dependent RNA polymerase. In some embodiments, the polymerase may be an alphavirus replicase, e.g., comprising one or more of alphavirus proteins nsP1, nsP2, nsP3, and nsP4. Whereas natural alphavirus genomes encode structural virion proteins in addition to the non- structural replicase polypeptide, in some embodiments, the self-amplifying RNA molecules do not encode alphavirus structural proteins. In some embodiments, the self-amplifying RNA may lead to the production of genomic RNA copies of itself in a cell, but not to the production of RNA that includes virions. Without being bound by theory or mechanism, the inability to produce these virions means that, unlike a wild-type alphavirus, the self-amplifying RNA molecule cannot perpetuate itself in infectious form. The alphavirus structural proteins which are necessary for perpetuation in wild-type viruses can be absent from self-amplifying RNAs of the present disclosure and their place can be taken by gene(s) encoding the immunogen of interest, such that the subgenomic transcript encodes the immunogen rather than the structural alphavirus virion proteins. In some embodiments, the self-amplifying RNA molecule may have two open reading frames. The first (5') open reading frame can encode a replicase; the second (3') open reading frame can encode a polypeptide comprising an antigen of interest. In some embodiments the RNA may have additional (e.g., downstream) open reading frames, e.g., to encode further antigens or to encode accessory polypeptides. In some embodiments, the second RNA or the saRNA molecule further includes (1) an alphavirus 5' replication recognition sequence, and (2) an alphavirus 3' replication recognition sequence. In some embodiments, the 5' sequence of the self-amplifying RNA molecule is selected to ensure compatibility with the encoded replicase. Optionally, self-amplifying RNA molecules described herein may also be designed to induce production of infectious viral particles that are attenuated or virulent, or to produce viral particles that are capable of a single round of subsequent infection. In some embodiments, the saRNA molecule is alphavirus-based. Alphaviruses include a set of genetically, structurally, and serologically related arthropod-borne viruses of the Togaviridae family. Exemplary viruses and virus subtypes within the alphavirus genus include Sindbis virus, Semliki Forest virus, Ross River virus, and Venezuelan equine encephalitis virus. As such, the self-amplifying RNA described herein may incorporate an RNA replicase derived from any one of semliki forest virus (SFV), sindbis virus (SIN), Venezuelan equine encephalitis virus (VEE), Ross-River virus (RRV), or other viruses belonging to the alphavirus family. In some embodiments, the self-amplifying RNA described herein may incorporate sequences derived from a mutant or wild-type virus sequence, e.g., the attenuated TC83 mutant of VEEV has been used in saRNAs. Alphavirus-based saRNAs are (+)-stranded saRNAs that may be translated after delivery to a cell, which leads to translation of a replicase (or replicase- transcriptase). The replicase is translated as a polyprotein which auto-cleaves to provide a replication complex which creates genomic (-)-strand copies of the (+)-strand delivered RNA. These (-)-strand transcripts may themselves be transcribed to give further copies of the (+)-stranded parent RNA and also to give a subgenomic transcript which encodes the desired gene product. Translation of the subgenomic transcript thus leads to in situ expression of the desired gene product by the infected cell. Suitable alphavirus saRNAs may use a replicase from a sindbis virus, a semliki forest virus, an eastern equine encephalitis virus, a Venezuelan equine encephalitis virus, or mutant variants thereof. In some embodiments, the self-amplifying RNA molecule is derived from or based on a virus other than an alphavirus, such as a positive-stranded RNA virus, and in particular a picornavirus, flavivirus, rubivirus, pestivirus, hepacivirus, calicivirus, or coronavirus. Suitable wild- type alphavirus sequences are well-known and are available from sequence depositories, such as the American Type Culture Collection, Rockville, Md. Representative examples of suitable alphaviruses include Aura (ATCC VR-368), Bebaru virus (ATCC VR-600, ATCC VR-1240), Cabassou (ATCC VR-922), Chikungunya virus (ATCC VR-64, ATCC VR-1241), Eastern equine encephalomyelitis virus (ATCC VR-65, ATCC VR-1242), Fort Morgan (ATCC VR-924), Getah virus (ATCC VR-369, ATCC VR-1243), Kyzylagach (ATCC VR-927), Mayaro (ATCC VR- 66), Mayaro virus (ATCC VR-1277), Middleburg (ATCC VR-370), Mucambo virus (ATCC VR-580, ATCC VR-1244), Ndumu (ATCC VR-371), Pixuna virus (ATCC VR- 372, ATCC VR-1245), Ross River virus (ATCC VR-373, ATCC VR-1246), Semliki Forest (ATCC VR-67, ATCC VR-1247), Sindbis virus (ATCC VR-68, ATCC VR-1248), Tonate (ATCC VR-925), Triniti (ATCC VR-469), Una (ATCC VR-374), Venezuelan equine encephalomyelitis (ATCC VR-69, ATCC VR-923, ATCC VR-1250 ATCC VR- 1249, ATCC VR-532), Western equine encephalomyelitis (ATCC VR-70, ATCC VR- 1251, ATCC VR-622, ATCC VR-1252), Whataroa (ATCC VR-926), and Y-62-33 (ATCC VR-375). In some aspects, one or more of the alphaviruses in the list may be excluded. In some embodiments, the self-amplifying RNA molecules described herein are larger than other types of RNA (e.g., saRNA). Typically, the self-amplifying RNA molecules described herein include at least about 4 kb. For example, the self-amplifying RNA may be equal to any one of, at least any one of, at most any one of, or between any two of 3 kb, 4 kb, 5 kb, 6 kb, 7 kb, 8 kb, 9 kb, 10 kb, 11 kb, 12 kb, 13 kb, 14 kb, 15 kb, 16 kb. In some instances the self-amplifying RNA may include at least about 5 kb, at least about 6 kb, at least about 7 kb, at least about 8 kb, at least about 9 kb, at least about 10 kb, at least about 11 kb, at least about 12 kb, or more than 12 kb. In certain examples, the self-amplifying RNA is about 4 kb to about 12 kb, about 5 kb to about 12 kb, about 6 kb to about 12 kb, about 7 kb to about 12 kb, about 8 kb to about 12 kb, about 9 kb to about 12 kb, about 10 kb to about 12 kb, about 11 kb to about 12 kb, about 5 kb to about 11 kb, about 5 kb to about 10 kb, about 5 kb to about 9 kb, about 5 kb to about 8 kb, about 5 kb to about 7 kb, about 5 kb to about 6 kb, about 6 kb to about 12 kb, about 6 kb to about 11 kb, about 6 kb to about 10 kb, about 6 kb to about 9 kb, about 6 kb to about 8 kb, about 6 kb to about 7 kb, about 7 kb to about 11 kb, about 7 kb to about 10 kb, about 7 kb to about 9 kb, about 7 kb to about 8 kb, about 8 kb to about 11 kb, about 8 kb to about 10 kb, about 8 kb to about 9 kb, about 9 kb to about 11 kb, about 9 kb to about 10 kb, or about 10 kb to about 11 kb. In some embodiments, the self-amplifying RNA molecule may encode a single polypeptide antigen or, optionally, two or more of polypeptide antigens linked together in a way that each of the sequences retains its identity (e.g., linked in series) when expressed as an amino acid sequence. The polypeptides generated from the self-amplifying RNA may then be produced as a fusion polypeptide or engineered in such a manner to result in separate polypeptide or peptide sequences. In some embodiments, the saRNA molecule may encode one polypeptide of interest or more, such as an antigen or more than one antigen, e.g., two, three, four, five, six, seven, eight, nine, ten, or more polypeptides. Alternatively, or in addition, one saRNA molecule may also encode more than one polypeptide of interest or more, such as an antigen, e.g., a bicistronic, or tricistronic RNA molecule that encodes different or identical antigens. The term "linked" as used herein refers to a first amino acid sequence or polynucleotide sequence covalently or non-covalently joined to a second amino acid sequence or polynucleotide sequence, respectively. The first amino acid or polynucleotide sequence can be directly joined or juxtaposed to the second amino acid or polynucleotide sequence or alternatively an intervening sequence can covalently join the first sequence to the second sequence. The term "linked" means not only a fusion of a first RNA molecule to a RNA molecule at the 5’-end or the 3’-end, but also includes insertion of the whole first RNA molecule into any two nucleotides in the second RNA molecule. The first second RNA molecule can be linked to a second RNA molecule by a phosphodiester bond or a linker. The linker can be, e.g., a polynucleotide. In some embodiments, the self-amplifying RNA described herein may encode one or more polypeptide antigens that include a range of epitopes. In some embodiments, the self-amplifying RNA described herein may encode epitopes capable of eliciting either a helper T-cell response or a cytotoxic T-cell response or both. In some embodiments, the saRNA molecule is purified, e.g., such as by filtration that may occur via, e.g., ultrafiltration, diafiltration, or, e.g., tangential flow ultrafiltration/diafiltration. Some embodiments of the disclosure are directed to a composition comprising a self- amplifying RNA molecule comprising a 5’ Cap, a 5’ untranslated region, a coding region comprising a sequence encoding an RNA-dependent RNA polymerase (also referred to as a “replicase”), a subgenomic promoter, such as one derived from an alphavirus, an open reading frame encoding a gene of interest (e.g., an antigen derived from influenza virus), a 3’ untranslated region, and a 3’ poly A sequence. In some embodiments, at least 5% of a total population of a particular nucleotide in the saRNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, the saRNA molecule does not include modified nucleotides, e.g., does not include modified nucleobases, and all of the nucleotides in the RNA molecule are conventional standard ribonucleotides A, U, G and C, with the exception of an optional 5' cap that may include, for example, 7-methylguanosine, which is further described below. In some embodiments, the saRNA molecule does not include modified nucleotides, e.g., does not include modified nucleobases, and all of the nucleotides in the RNA molecule are conventional standard ribonucleotides A, U, G and C, with the exception of an optional 5' cap that may include, for example, 7-methylguanosine, which is further described below. In some embodiments, the RNA may include a 5' cap comprising a 7'-methylguanosine, and the first 1, 2 or 3 5' ribonucleotides may be methylated at the 2' position of the ribose. In alternative embodiments, each RNA polynucleotide encoding a particular antigen is formulated in an individual LNP, such that each LNP encapsulates an RNA polynucleotide encoding identical antigens. Such embodiments may be referred herein as "post-mix". Accordingly, in some embodiments, the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; the fifth RNA polynucleotide is formulated in a fifth LNP; the sixth RNA polynucleotide is formulated in a sixth LNP; the seventh RNA polynucleotide is formulated in a seventh LNP; and the eighth RNA polynucleotide is formulated in an eighth LNP. In some embodiments, the molar ratio of the first LNP to the second LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the second LNP is greater than 1:1. In some embodiments, the molar ratio of the first LNP to the third LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the third LNP is greater than 1:1. In some embodiments, the molar ratio of the first LNP to the fourth LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the fourth LNP is greater than 1:1. In some embodiments, the molar ratio of the first LNP to the fifth LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the fifth LNP is greater than 1:1. In some embodiments, the molar ratio of the first LNP to the sixth LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the sixth LNP is greater than 1:1. In some embodiments, the molar ratio of the first LNP to the seventh LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the seventh LNP is greater than 1:1. In some embodiments, the molar ratio of the first LNP to the eighth LNP in the mix of LNPs prior to formulation into LNPs is about 1:50, about 1:25, about 1: 10, about 1:5, about 1:4, about 1:3, about 1:2, about 1:1, about 2: 1, about 3: 1, about 4: 1, or about 5: 1, about 10: 1, about 25: 1 or about 50: 1. In some embodiments, the molar ratio of the first LNP to the eighth LNP is greater than 1:1. Surprisingly, the inventors discovered that regardless of the process, the resulting ratio of RNA polynucleotide was comparable whether the plurality of RNA polynucleotides are mixed prior to formulation in an LNP (pre-mixed) or whether the RNA polynucleotides encoding a particular antigen is formulated in an individual LNP and the plurality of LNPs for different antigens are mixed (post-mixed). As a result of the discovery, there may be an option for medical professionals to mix and administer different ratios of antigens depending on the influenza season, particularly when the individual LNPs encapsulate RNA for a single antigen. In some embodiments, the mRNAs encoding influenza antigens are separately encapsulated (e.g., separate encapsulation of each mRNA encoding an influenza antigen; encapsulation of mRNA(s) encoding an influenza type A antigen in a first population of nanoparticles (e.g., LNPs) and encapsulation of mRNA(s) encoding an influenza type B antigen in a second population of nanoparticles (e.g., LNPs); or encapsulation of mRNA(s) encoding an influenza type A antigen in a first population of nanoparticles (e.g., LNPs) and encapsulation of each mRNA encoding an influenza type B antigen in a separate population of nanoparticles (e.g., LNPs)). In some embodiments, the composition comprises coencapsulated mRNAs encoding an influenza antigen. In some embodiments, a composition comprising (i) two or more different RNAs, each encoding an antigenic polypeptide (e.g., an HA protein) of an influenza type A virus (e.g., so that the two or more different RNAs, together, encode two or more different influenza A HA polypeptides), and (ii) two or more different RNAs, each encoding an antigenic polypeptide (e.g., an HA protein) of an influenza type B virus (e.g., so that the two or more different RNAs, together, encode two or more different influenza B HA polypeptides) are formulated in nanoparticles (e.g., LNPs) such that: Each RNA encoding an antigenic polypeptide of an influenza type A virus is encapsulated in a first population of nanoparticles and each RNA encoding an antigenic polypeptide of an influenza type B virus is encapsulated in a second population of nanoparticles; Each RNA is encapsulated in a separate nanoparticle; or Each RNA encoding an influenza type A antigenic polypeptide is encapsulated in a first population of nanoparticles and the two RNAs encoding an influenza type B antigenic polypeptide are each encapsulated in separate populations of nanoparticles. In some embodiments, the antigenic polypeptide encodes a hemagglutinin protein or immunogenic fragment thereof. In some embodiments, the hemagglutinin protein is H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, H18, or an immunogenic fragment thereof. In some embodiments, the hemagglutinin protein does not comprise a head domain. In some embodiments, the hemagglutinin protein comprises a portion of the head domain. In some embodiments, the hemagglutinin protein does not comprise a cytoplasmic domain. In some embodiments, the hemagglutinin protein comprises a portion of the cytoplasmic domain. In some embodiments, the truncated hemagglutinin protein comprises a portion of the transmembrane domain. Some embodiments provide influenza vaccines comprising one or more RNA polynucleotides having an open reading frame encoding a hemagglutinin protein and a pharmaceutically acceptable carrier or excipient, formulated within a cationic lipid nanoparticle. In some embodiments, the hemagglutinin protein is selected from H1, H7 and H10. In some embodiments, the RNA polynucleotide further encodes neuraminidase (NA) protein. In some embodiments, the hemagglutinin protein is derived from a strain of Influenza A virus or Influenza B virus or combinations thereof. In some embodiments, the Influenza virus is selected from H1N1, H3N2, H7N9, and H10N8. In some embodiments, the virus is a strain of Influenza A or Influenza B or combinations thereof. In some embodiments, the strain of Influenza A or Influenza B is associated with birds, pigs, horses, dogs, humans, or non-human primates. In some embodiments, the antigenic polypeptide encodes a hemagglutinin protein or fragment thereof. In some embodiments, the hemagglutinin protein is H7 or H10 or a fragment thereof. In some embodiments, the hemagglutinin protein comprises a portion of the head domain (HA1). In some embodiments, the hemagglutinin protein comprises a portion of the cytoplasmic domain. In some embodiments, the truncated hemagglutinin protein. In some embodiments, the protein is a truncated hemagglutinin protein comprises a portion of the transmembrane domain. In some embodiments, the virus is selected from the group consisting of H7N9 and H10N8. Protein fragments, functional protein domains, and homologous proteins are also considered to be within the scope of polypeptides of interest. For example, provided herein is any protein fragment (meaning a polypeptide sequence at least one amino acid residue shorter than a reference polypeptide sequence but otherwise identical) of a reference protein 10, 20, 30, 40, 50, 60, 70, 80, 90, 100 or greater than 100 amino acids in length. In some embodiments, an Influenza RNA composition includes an RNA encoding an antigenic fusion protein. Thus, the encoded antigen or antigens may include two or more proteins (e.g., protein and/or protein fragment) joined together. Alternatively, the protein to which a protein antigen is fused does not promote a strong immune response to itself, but rather to the influenza antigen. Antigenic fusion proteins, in some embodiments, retain the functional property from each original protein. Some embodiments provide methods of preventing or treating influenza viral infection comprising administering to a subject any of the vaccines described herein. In some embodiments, the antigen specific immune response comprises a T cell response. In some embodiments, the antigen specific immune response comprises a B cell response. In some embodiments, the antigen specific immune response comprises both a T cell response and a B cell response. In some embodiments, the method of producing an antigen specific immune response involves a single administration of the vaccine. In some embodiments, the vaccine is administered to the subject by intradermal, intramuscular injection, subcutaneous injection, intranasal inoculation, or oral administration. In some embodiments, the RNA (e.g., mRNA) polynucleotides or portions thereof may encode one or more polypeptides or fragments thereof of an influenza strain as an antigen. The present disclosure relates to mRNA vaccines in general. Several mRNA vaccine platforms are available in the prior art. The basic structure of in vitro transcribed (IVT) mRNA closely resembles “mature” eukaryotic mRNA and includes (i) a protein-encoding open reading frame (ORF), flanked by (ii) 5′ and 3′ untranslated regions (UTRs), and at the end sides (iii) a 7- methyl guanosine 5′ cap structure and (iv) a 3′ poly(A) tail. The non-coding structural features play important roles in the pharmacology of mRNA and can be individually optimized to modulate the mRNA stability, translation efficiency, and immunogenicity. By incorporating modified nucleosides, mRNA transcripts referred to as “nucleoside-modified mRNA” can be produced with reduced immunostimulatory activity, and therefore an improved safety profile can be obtained. In addition, modified nucleosides allow the design of mRNA vaccines with strongly enhanced stability and translation capacity, as they can avoid the direct antiviral pathways that are induced by type IFNs and are programmed to degrade and inhibit invading mRNA. For instance, the replacement of uridine with pseudouridine in IVT mRNA reduces the activity of 2′- 5′-oligoadenylate synthetase, which regulates the mRNA cleavage by RNase L. In addition, lower activities are measured for protein kinase R, an enzyme that is associated with the inhibition of the mRNA translation process. Besides the incorporation of modified nucleotides, other approaches have been validated to increase the translation capacity and stability of mRNA. One example is the development of “sequence-engineered mRNA”. Here, mRNA expression can be strongly increased by sequence optimizations in the ORF and UTRs of mRNA, for instance by enriching the GC content, or by selecting the UTRs of natural long-lived mRNA molecules. Another approach is the design of “self-amplifying mRNA” constructs. These are mostly derived from alphaviruses and contain an ORF that is replaced by the antigen of interest together with an additional ORF encoding viral replicase. The latter drives the intracellular amplification of mRNA and can therefore significantly increase the antigen expression capacity. Also, several modifications have been implemented at the end structures of mRNA. Anti- reverse cap (ARCA) modifications can ensure the correct cap orientation at the 5′ end, which yields almost complete fractions of mRNA that can efficiently bind the ribosomes. Other cap modifications, such as phosphorothioate cap analogs, can further improve the affinity towards the eukaryotic translation initiation factor 4E, and increase the resistance against the RNA decapping complex. Conversely, by modifying its structure, the potency of mRNA to trigger innate immune responses can be further improved, but to the detriment of translation capacity. By stabilizing the mRNA with either a phosphorothioate backbone, or by its precipitation with the cationic protein protamine, antigen expression can be diminished, but stronger immune-stimulating capacities can be obtained. In one aspect the invention relates to an immunogenic composition comprising an mRNA molecule that encodes one or more polypeptides or fragments thereof of an influenza strain as an antigen. In some embodiments, the mRNA molecule comprises a nucleoside-modified mRNA. mRNA useful in the disclosure typically include a first region of linked nucleosides encoding a polypeptide of interest (e.g., a coding region), a first flanking region located at the 5 '-terminus of the first region (e.g., a 5 -UTR), a second flanking region located at the 3 '-terminus of the first region (e.g., a 3 -UTR), at least one 5 '-cap region, and a 3 '-stabilizing region. In some embodiments, the mRNA of the disclosure further includes a poly-A region or a Kozak sequence (e.g., in the 5 '-UTR). In some cases, mRNA of the disclosure may contain one or more intronic nucleotide sequences capable of being excised from the polynucleotide. In some embodiments, mRNA of the disclosure may include a 5' cap structure, a chain terminating nucleotide, a stem loop, a poly A sequence, and/or a polyadenylation signal. Any one of the regions of a nucleic acid may include one or more alternative components (e.g., an alternative nucleoside). For example, the 3 '-stabilizing region may contain an alternative nucleoside such as an L-nucleoside, an inverted thymidine, or a 2'-0-methyl nucleoside and/or the coding region, 5 '-UTR, 3 '-UTR, or cap region may include an alternative nucleoside such as a 5-substituted uridine (e.g., 5- methoxyuridine), a 1 -substituted pseudouridine (e.g., 1-methyl-pseudouridine), and/or a 5- substituted cytidine (e.g., 5-methyl-cytidine). The compositions described herein comprise at least one RNA polynucleotide, such as a mRNA (e.g., modified mRNA). mRNA, for example, is transcribed in vitro from template DNA, referred to as an “in vitro transcription template.” In some embodiments, an in vitro transcription template encodes a 5′ untranslated (UTR) region, contains an open reading frame, and encodes a 3′ UTR and a polyA tail. The particular nucleic acid sequence composition and length of an in vitro transcription template will depend on the mRNA encoded by the template. A “5′ untranslated region” (UTR) refers to a region of an mRNA that is directly upstream (i.e., 5′) from the start codon (i.e., the first codon of an mRNA transcript translated by a ribosome) that does not encode a polypeptide. In preferred embodiments, the 5’ UTR comprises SEQ ID NO: 1. A “3′ untranslated region” (UTR) refers to a region of an mRNA that is directly downstream (i.e., 3′) from the stop codon (i.e., the codon of an mRNA transcript that signals a termination of translation) that does not encode a polypeptide. In preferred embodiments, the 3’ UTR comprises SEQ ID NO: 2. An “open reading frame” is a continuous stretch of DNA beginning with a start codon (e.g., methionine (ATG)), and ending with a stop codon (e.g., TAA, TAG or TGA) and encodes a polypeptide. A “polyA tail” is a region of mRNA that is downstream, e.g., directly downstream (i.e., 3′), from the 3′ UTR that contains multiple, consecutive adenosine monophosphates. A polyA tail may contain 10 to 300 adenosine monophosphates. For example, a polyA tail may contain 10, 20, 30, 40, 50, 60, 70, 80, 90, 100, 110, 120, 130, 140, 150, 160, 170, 180, 190, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290 or 300 adenosine monophosphates. In some embodiments, a polyA tail contains 50 to 250 adenosine monophosphates. In a relevant biological setting (e.g., in cells, in vivo) the poly(A) tail functions to protect mRNA from enzymatic degradation, e.g., in the cytoplasm, and aids in transcription termination, export of the mRNA from the nucleus and translation. In preferred embodiments, the 3′ polyadenylation tail comprises SEQ ID NO: 3. In some embodiments, a polynucleotide includes 200 to 3,000 nucleotides. For example, a polynucleotide may include 200 to 500, 200 to 1000, 200 to 1500, 200 to 3000, 500 to 1000, 500 to 1500, 500 to 2000, 500 to 3000, 1000 to 1500, 1000 to 2000, 1000 to 3000, 1500 to 3000, or 2000 to 3000 nucleotides). In some embodiments, a LNP includes one or more RNAs, and the one or more RNAs, lipids, and amounts thereof may be selected to provide a specific N:P ratio. The N:P ratio of the composition refers to the molar ratio of nitrogen atoms in one or more lipids to the number of phosphate groups in an RNA. In general, a lower N:P ratio is preferred. The one or more RNA, lipids, and amounts thereof may be selected to provide an N:P ratio from about 2: 1 to about 30:1, such as 2:1, 3:1, 4:1, 5:1, 6:1, 7:1, 8:1, 9:1, 10:1, 12:1, 14:1, 16:1, 18:1, 20:1, 22: 1, 24: 1, 26: 1 , 28: 1 , or 30: 1. In certain embodiments, the N:P ratio may be from about 2: 1 to about 8: 1. In other embodiments, the N:P ratio is from about 5 : 1 to about 8: 1. For example, the N:P ratio may be about 5.0: 1 , about 5.5 : 1, about 5.67: 1, about 6.0: 1, about 6.5: 1 , or about 7.0: 1. For example, the N:P ratio may be about 5.67: 1. In some embodiments, the composition comprises a second LNP, wherein the second LNP does not encapsulate a polynucleotide as described in WO2023057930, the entirety of which is incorporated herein by reference. In some aspects, the compositions and methods described herein relate to frozen or lyophilized lipid nanoparticles encapsulating or associated with RNA in the presence of a cryoprotectant, preferably a carbohydrate cryoprotectant, and/or further in the presence of lipid nanoparticles that are devoid of nucleic acid, (e.g., not encapsulating and not associated with RNA (also referred herein as “blank” LNPs), or liposomes, or a higher cryoprotectant concentration) resulting in a composition comprising LNPs encapsulating RNA or associated with RNA that is characterized by, among other things, an improved integrity of the RNA after completion of the respective freezing or lyophilization process and which is further characterized by increased storage stability, such as, for example, with respect to storage for extended periods and/or under non-cooling conditions, as compared to a composition comprising lipid nanoparticles encapsulating or associated with RNA in the absence of the blank LNPs, or liposomes, or a higher cryoprotectant concentration when assessed under identical conditions. In other words, in some aspects, the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA, a second lipid nanoparticle that is devoid of nucleic acid, and a cryoprotectant that results in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine. In some aspects, the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA and an increased cryoprotectant concentration that results in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine. In some aspects, the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA and a second lipid nanoparticle that is devoid of nucleic acid that results in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine. In some aspects, the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA and a liposome that results in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine. In some aspects, the compositions include a mixture of a first lipid nanoparticle encapsulating or associated with RNA, a liposome, and an increased cryoprotectant concentration that result in improved characteristics of the encapsulated RNA after freezing or lyophilization processes, preferably for use as a pharmaceutical composition, such as, for example, an immunogenic composition or vaccine. Advantageously, the compositions and methods thereof described herein are suitable for use at an industrial scale. The methods described herein may be used to produce, for example, a frozen or lyophilized composition comprising LNPs encapsulating or associated with RNA having the above-mentioned properties in a reproducible and cost- effective manner. The composition comprising LNPs encapsulating or associated with RNA may advantageously be stored, shipped and applied, e.g., for example as a vaccine, without a cold chain, while the integrity and the biological activity of the RNA in the composition remain unexpectedly high. mRNA of the disclosure may include one or more naturally occurring components, including any of the canonical nucleotides A (adenosine), G (guanosine), C (cytosine), U (uridine), or T (thymidine). In one embodiment, all or substantially all of the nucleotides comprising (a) the 5'-UTR, (b) the open reading frame (ORF), (c) the 3 '-UTR, (d) the poly A tail, and any combination of (a, b, c, or d above) comprise naturally occurring canonical nucleotides A (adenosine), G (guanosine), C (cytosine), U (uridine), or T (thymidine). mRNA of the disclosure may include one or more alternative components, as described herein, which impart useful properties including increased stability and/or the lack of a substantial induction of the innate immune response of a cell into which the polynucleotide is introduced. For example, a modRNA may exhibit reduced degradation in a cell into which the modRNA is introduced, relative to a corresponding unaltered mRNA. These alternative species may enhance the efficiency of protein production, intracellular retention of the polynucleotides, and/or viability of contacted cells, as well as possess reduced immunogenicity. mRNA of the disclosure may include one or more modified (e.g., altered or alternative) nucleobases, nucleosides, nucleotides, or combinations thereof. The mRNA useful in a LNP can include any useful modification or alteration, such as to the nucleobase, the sugar, or the internucleoside linkage (e.g., to a linking phosphate / to a phosphodiester linkage / to the phosphodiester backbone). In certain embodiments, alterations (e.g., one or more alterations) are present in each of the nucleobase, the sugar, and the internucleoside linkage. Alterations according to the present disclosure may be alterations of ribonucleic acids (RNAs), e.g., the substitution of the 2'-OH of the ribofuranosyl ring to 2'-H, threose nucleic acids (TNAs), glycol nucleic acids (GNAs), peptide nucleic acids (PNAs), locked nucleic acids (LNAs), or hybrids thereof. Additional alterations are described herein. mRNA of the disclosure may or may not be uniformly altered along the entire length of the molecule. For example, one or more or all types of nucleotide (e.g., purine or pyrimidine, or any one or more or all of A, G, U, C) may or may not be uniformly altered in a mRNA, or in a given predetermined sequence region thereof. In some instances, all nucleotides X in a mRNA (or in a given sequence region thereof) are altered, wherein X may any one of nucleotides A, G, U, C, or any one of the combinations A+G, A+U, A+C, G+U, G+C, U+C, A+G+U, A+G+C, G+U+C or A+G+C. Different sugar alterations and/or internucleoside linkages (e.g., backbone structures) may exist at various positions in a polynucleotide. One of ordinary skill in the art will appreciate that the nucleotide analogs or other alteration(s) may be located at any position(s) of a polynucleotide such that the function of the polynucleotide is not substantially decreased. An alteration may also be a 5'- or 3 '-terminal alteration. In some embodiments, the polynucleotide includes an alteration at the 3 '-terminus. The polynucleotide may contain from about 1% to about 100% alternative nucleotides (either in relation to overall nucleotide content, or in relation to one or more types of nucleotide, i.e., any one or more of A, G, U or C) or any intervening percentage (e.g., from 1% to 20%, from 1% to 25%, from 1% to 50%, from 1% to 60%, from 1% to 70%, from 1% to 80%, from 1% to 90%, from 1% to 95%, from 10% to 20%, from 10% to 25%, from 10% to 50%, from 10% to 60%, from 10% to 70%, from 10% to 80%, from 10% to 90%, from 10% to 95%, from 10% to 100%, from 20% to 25%, from 20% to 50%, from 20% to 60%, from 20% to 70%, from 20% to 80%, from 20% to 90%, from 20% to 95%, from 20% to 100%, from 50% to 60%, from 50% to 70%, from 50% to 80%, from 50% to 90%, from 50% to 95%, from 50% to 100%, from 70% to 80%, from 70% to 90%, from 70% to 95%, from 70% to 100%, from 80% to 90%, from 80% to 95%, from 80% to 100%, from 90% to 95%, from 90% to 100%, and from 95% to 100%). It will be understood that any remaining percentage is accounted for by the presence of a canonical nucleotide (e.g., A, G, U, or C). Polynucleotides may contain at a minimum zero and at maximum 100% alternative nucleotides, or any intervening percentage, such as at least 5% alternative nucleotides, at least 10% alternative nucleotides, at least 25% alternative nucleotides, at least 50% alternative nucleotides, at least 80% alternative nucleotides, or at least 90% alternative nucleotides. For example, polynucleotides may contain an alternative pyrimidine such as an alternative uracil or cytosine. In some embodiments, at least 5%, at least 10%, at least 25%, at least 50%, at least 80%, at least 90% or 100% of the uracil in a polynucleotide is replaced with an alternative uracil (e.g., a 5-substituted uracil). The alternative uracil can be replaced by a compound having a single unique structure or can be replaced by a plurality of compounds having different structures (e.g., 2, 3, 4 or more unique structures). In some instances, at least 5%, at least 10%, at least 25%, at least 50%, at least 80%, at least 90% or 100% of the cytosine in the polynucleotide is replaced with an alternative cytosine (e.g., a 5-substituted cytosine). The alternative cytosine can be replaced by a compound having a single unique structure or can be replaced by a plurality of compounds having different structures (e.g., 2, 3, 4 or more unique structures). In some instances, nucleic acids do not substantially induce an innate immune response of a cell into which the polynucleotide (e.g., mRNA) is introduced. Features of an induced innate immune response include 1) increased expression of pro-inflammatory cytokines, 2) activation of intracellular PRRs (RIG-I, MDA5, etc., and/or 3) termination or reduction in protein translation. In some embodiments, the mRNA comprises one or more alternative nucleoside or nucleotides. The alternative nucleosides and nucleotides can include an alternative nucleobase. A nucleobase of a nucleic acid is an organic base such as a purine or pyrimidine or a derivative thereof. A nucleobase may be a canonical base (e.g., adenine, guanine, uracil, thymine, and cytosine). These nucleobases can be altered or wholly replaced to provide polynucleotide molecules having enhanced properties, e.g., increased stability such as resistance to nucleases. Non-canonical or modified bases may include, for example, one or more substitutions or modifications including but not limited to alkyl, aryl, halo, oxo, hydroxyl, alkyloxy, and/or thio substitutions; one or more fused or open rings; oxidation; and/or reduction. In some embodiments, the nucleobase is an alternative uracil. Exemplary nucleobases and nucleosides having an alternative uracil include pseudouridine (ψ), pyridin-4- one ribonucleoside, 5-aza-uracil, 6-aza-uracil, 2-thio-5-aza-uracil, 2-thio-uracil (s2U), 4-thio- uracil (s4U), 4-thio-pseudouridine, 2-thio-pseudouridine, 5 -hydroxy -uracil (ho5U), 5-aminoallyl- uracil, 5-halo-uracil (e.g., 5-iodo-uracil or 5-bromo-uracil), 3-methyl-uracil (m U), 5-methoxy- uracil (mo5U), uracil 5-oxyacetic acid (cmo5U), uracil 5-oxyacetic acid methyl ester (mcmo5U), 5-carboxymethyl-uracil (cm5U), 1 -carboxymethyl-pseudouridine, 5-carboxyhydroxymethyl- uracil (chm5U), 5-carboxyhydroxymethyl-uracil methyl ester (mchm5U), 5- methoxycarbonylmethyl-uracil (mcm5U), 5-methoxycarbonylmethyl-2-thio-uracil (mcm5s2U), 5- aminomethyl-2-thio-uracil (nmVu), 5-methylaminomethyl-uracil (mnm5U), 5-methylaminomethyl- 2-thio-uracil (mnmVu), 5-methylaminomethyl-2-seleno-uracil (mnm5se2U), 5-carbamoylmethyl- uracil (ncm5U), 5-carboxymethylaminomethyl-uracil (cmnm5U), 5-carboxymethylaminomethyl-2- thio-uracil (cmnmVu), 5-propynyl-uracil, 1- propynyl-pseudouracil, 5-taurinomethyl-uracil (xm5U), 1-taurinomethyl-pseudouridine, 5- taurinomethyl-2-thio-uracil(xm5s2U), 1 - taurinomethyl-4-thio-pseudouridine, 5-methyl-uracil (m5U, i.e., having the nucleobase deoxythymine), 1-methyl-pseudouridine (mV), 5-methyl-2- thio-uracil (m5s2U), l-methyl-4-thio- pseudouridine (m xj/), 4-thio- 1-methyl-pseudouridine, 3- methyl-pseudouridine (m \|/), 2 -thio- 1- methyl-pseudouridine, 1 -methyl- 1-deaza-pseudouri dine, 2-thio-l -methyl- 1-deaza-pseudouri dine, dihydrouracil (D), dihydropseudouridine, 5,6- dihydrouracil, 5-methyl-dihydrouracil (m5D), 2-thio-dihydrouracil, 2-thio-dihydropseudouridine, 2-methoxy-uracil, 2-methoxy-4-thio-uracil, 4- methoxy- pseudouridine, 4-methoxy -2-thio-pseudouridine, N1-methyl-pseudouridine, 3-(3- amino-3- carboxypropyl)uracil (acp U), l-methyl-3-(3-amino-3-carboxypropyl)pseudouridine (acp ψ), 5- (isopentenylaminomethyl)uracil (inm5U), 5-(isopentenylaminomethyl)-2-thio-uracil (inm5s2U), 5,2'-0-dimethyl-uridine (m5Um), 2-thio-2'-0_methyl-uridine (s2Um), 5- methoxycarbonylmethyl-2'-0-methyl-uridine (mem Um), 5-carbamoylmethyl-2'-0-methyl- uridine (ncm5Um), 5-carboxymethylaminomethyl-2'-0-methyl-uridine (cmnm5Um), 3,2'-0- dimethyl- uridine (m Um), and 5-(isopentenylaminomethyl)-2'-0-methyl-uridine (inm5Um), 1- thio-uracil, deoxythymidine, 5-(2-carbomethoxyvinyl)-uracil, 5-(carbamoylhydroxymethyl)-uracil, 5- carbamoylmethyl-2-thio-uracil, 5-carboxymethyl-2-thio- uracil, 5-cyanomethyl-uracil, 5-methoxy- 2-thio-uracil, and 5-[3-(l-E-propenylamino)]uracil. In some embodiments, the nucleobase is an alternative cytosine. Exemplary nucleobases and nucleosides having an alternative cytosine include 5-aza-cytosine, 6-aza- cytosine, pseudoisocytidine, 3-methyl-cytosine (m3C), N4-acetyl-cytosine (ac4C), 5-formyl- cytosine (f5C), N4-methyl-cytosine (m4C), 5-methyl-cytosine (m5C), 5-halo-cytosine (e.g., 5- iodo-cytosine), 5-hydroxymethyl-cytosine (hm5C), 1-methyl-pseudoisocytidine, pyrrolo- cytosine, pyrrolo-pseudoisocytidine, 2-thio-cytosine (s2C), 2-thio-5-methyl-cytosine, 4-thio- pseudoisocy tidine, 4-thio- 1 -methy 1-pseudoisocy tidine, 4-thio- 1 -methyl- 1 -deaza- pseudoisocytidine, 1 -methyl- 1-deaza-pseudoisocyti dine, zebularine, 5-aza-zebularine, 5 - methy 1- zebularine, 5-aza-2-thio-zebularine, 2-thio-zebularine, 2-methoxy-cytosine, 2-methoxy- 5- methyl-cytosine, 4-methoxy-pseudoisocytidine, 4-methoxy- 1 -methyl-pseudoisocytidine, lysidine (k2C), 5,2'-0-dimethyl-cytidine (m5Cm), N4-acetyl-2'-0-methyl-cytidine (ac4Cm), N4,2'- 0-dimethyl-cytidine (m4Cm), 5-formyl-2'-0-methyl-cytidine (f5Cm), N4,N4,2'-0- trimethyl-cytidine (m42Cm), 1 -thio-cytosine, 5-hydroxy-cytosine, 5-(3-azidopropyl)-cytosine, and 5-(2-azidoethyl)- cytosine. In some embodiments, the nucleobase is an alternative adenine. Exemplary nucleobases and nucleosides having an alternative adenine include 2-amino-purine, 2,6- diaminopurine, 2-amino-6-halo-purine (e.g., 2-amino-6-chloro-purine), 6-halo-purine (e.g., 6- chloro-purine), 2-amino-6-methyl-purine, 8-azido-adenine, 7-deaza-adenine, 7-deaza-8-aza- adenine, 7-deaza-2-amino-purine, 7-deaza-8-aza-2-amino-purine, 7-deaza-2,6-diaminopurine, 7-deaza-8-aza-2,6-diaminopurine, 1 -methy 1-adenine (ml A), 2-methyl-adenine (m2A), N6- methyl-adenine (m6A), 2-methylthio-N6-methyl-adenine (ms2m6A), N6-isopentenyl-adenine (i6A), 2-methylthio-N6-isopentenyl-adenine (ms2i6A), N6-(cis-hydroxyisopentenyl)adenine (io6A), 2-methylthio-N6-(cis-hydroxyisopentenyl)adenine (ms2io6A), N6-glycinylcarbamoyl- adenine (g6A), N6-threonylcarbamoyl-adenine (t6A), N6-methyl-N6-threonylcarbamoyl- adenine (m6t6A), 2-methylthio-N6-threonylcarbamoyl-adenine (ms2g6A), N6,N6-dimethyl- adenine (m62A), N6-hydroxynorvalylcarbamoyl-adenine (hn6A), 2-methylthio-N6- hydroxynorvalylcarbamoyl-adenine (ms2hn6A), N6-acetyl-adenine (ac6A), 7-methyl-adenine, 2- methylthio-adenine, 2-methoxy -adenine, N6,2'-0-dimethyl-adenosine (m6Am), N6,N6,2'-0- trimethyl-adenosine (m62Am), l,2'-0-dimethyl-adenosine (ml Am), 2-amino-N6-methyl-purine, 1- thio-adenine, 8-azido-adenine, N6-(19-amino-pentaoxanonadecyl)-adenine, 2,8-dimethyl- adenine, N6-formyl-adenine, and N6-hydroxymethyl-adenine. In some embodiments, the nucleobase is an alternative guanine. Exemplary nucleobases and nucleosides having an alternative guanine include inosine (I), 1-methyl-inosine (mil), wyosine (imG), methylwyosine (mimG), 4-demethyl-wyosine (imG-14), isowyosine (imG2), wybutosine (yW), peroxywybutosine (o2yW), hydroxywybutosine (OHyW), undermodified hydroxywybutosine (OHyW*), 7-deaza-guanine, queuosine (Q), epoxyqueuosine (oQ), galactosyl-queuosine (galQ), mannosyl-queuosine (manQ), 7-cyano-7-deaza-guanine (preQO), 7-aminomethyl-7-deaza-guanine (preQl), archaeosine (G+), 7-deaza-8-aza-guanine, 6- thio- guanine, 6-thio-7-deaza-guanine, 6-thio-7-deaza-8-aza-guanine, 7-methyl-guanine (m7G), 6- thio-7-methyl-guanine, 7-methyl-inosine, 6-methoxy-guanine, 1 -methyl-guanine (mlG), N2- methyl-guanine (m2G), N2,N2-dimethyl-guanine (m22G), N2,7-dimethyl-guanine (m2,7G), N2, N2,7-dimethyl-guanine (m2,2,7G), 8-oxo-guanine, 7-methyl-8-oxo-guanine, 1 -methyl-6-thio- guanine, N2-methyl-6-thio-guanine, N2,N2-dimethyl-6-thio-guanine, N2-methyl-2'-0-methyl- guanosine (m2Gm), N2,N2-dimethyl-2'-0-methyl-guanosine (m22Gm), 1 -methyl-2'-0-methyl- guanosine (mlGm), N2,7-dimethyl-2'-0-methyl-guanosine (m2,7Gm), 2'-0-methyl-inosine (Im), l,2'-0-dimethyl-inosine (mllm), 1 -thio-guanine, and O-6-methyl-guanine. The alternative nucleobase of a nucleotide can be independently a purine, a pyrimidine, a purine or pyrimidine analog. For example, the nucleobase can be an alternative to adenine, cytosine, guanine, uracil, or hypoxanthine. In another embodiment, the nucleobase can also include, for example, naturally-occurring and synthetic derivatives of a base, including pyrazolo[3,4-d]pyrimidines, 5-methylcytosine (5-me-C), 5-hydroxymethyl cytosine, xanthine, hypoxanthine, 2-aminoadenine, 6-methyl and other alkyl derivatives of adenine and guanine, 2- propyl and other alkyl derivatives of adenine and guanine, 2-thiouracil, 2-thiothymine and 2- thiocytosine, 5-propynyl uracil and cytosine, 6-azo uracil, cytosine and thymine, 5-uracil (pseudouracil), 4-thiouracil, 8-halo (e.g., 8-bromo), 8-amino, 8-thiol, 8-thioalkyl, 8-hydroxy and other 8-substituted adenines and guanines, 5-halo particularly 5-bromo, 5-trifluoromethyl and other 5-substituted uracils and cytosines, 7-methylguanine and 7-methyladenine, 8-azaguanine and 8-azaadenine, deazaguanine, 7-deazaguanine, 3-deazaguanine, deazaadenine, 7- deazaadenine, 3 -deazaadenine, pyrazolo[3,4-d]pyrimidine, imidazo[l,5-a] l,3,5 triazinones, 9- deazapurines, imidazo[4,5-d]pyrazines, thiazolo[4,5-d]pyrimidines, pyrazin-2-ones, 1,2,4- triazine, pyridazine; or 1,3,5 triazine. When the nucleotides are depicted using the shorthand A, G, C, T or U, each letter refers to the representative base and/or derivatives thereof, e.g., A includes adenine or adenine analogs, e.g., 7-deaza adenine). The mRNA may include a 5 '-cap structure. The 5 '-cap structure of a polynucleotide is involved in nuclear export and increasing polynucleotide stability and binds the mRNA Cap Binding Protein (CBP), which is responsible for polynucleotide stability in the cell and translation competency through the association of CBP with poly -A binding protein to form the mature cyclic mRNA species. The cap further assists the removal of 5 '-proximal introns removal during mRNA splicing. Endogenous polynucleotide molecules may be 5 '-end capped generating a 5 '-ppp-5' - triphosphate linkage between a terminal guanosine cap residue and the 5 '-terminal transcribed sense nucleotide of the polynucleotide. This 5 '-guanylate cap may then be methylated to generate an N7-methyl-guanylate residue. The ribose sugars of the terminal and/or anteterminal transcribed nucleotides of the 5 ' end of the polynucleotide may optionally also be 2'-0- methylated.5 '-decapping through hydrolysis and cleavage of the guanylate cap structure may target a polynucleotide molecule, such as an mRNA molecule, for degradation. Alterations to polynucleotides may generate a non-hydrolyzable cap structure preventing decapping and thus increasing polynucleotide half-life. Because cap structure hydrolysis requires cleavage of 5 '-ppp-5' phosphorodiester linkages, alternative nucleotides may be used during the capping reaction. For example, a Vaccinia Capping Enzyme from New England Biolabs (Ipswich, MA) may be used with a-thio-guanosine nucleotides according to the manufacturer's instructions to create a phosphorothioate linkage in the 5 '-ppp-5 ' cap. Additional alternative guanosine nucleotides may be used such as a-methyl- phosphonate and seleno-phosphate nucleotides. Additional alterations include, but are not limited to, 2'-0-methylation of the ribose sugars of 5'-terminal and/or 5 '-anteterminal nucleotides of the polynucleotide (as mentioned above) on the 2'-hydroxy group of the sugar. Multiple distinct 5 '-cap structures can be used to generate the 5 '-cap of an mRNA molecule. Cap analogs, which herein are also referred to as synthetic cap analogs, chemical caps, chemical cap analogs, or structural or functional cap analogs, differ from natural (i.e., endogenous, wild-type, or physiological) 5 '-caps in their chemical structure, while retaining cap function. Cap analogs may be chemically (i.e., non-enzymatically) or enzymatically synthesized and/linked to a polynucleotide. For example, the Anti-Reverse Cap Analog (ARCA) cap contains two guanosines linked by a 5 '-5 '-triphosphate group, wherein one guanosine contains an N7- methyl group as well as a 3'-0-methyl group (i.e., N7, '-0-dimethyl-guanosine-5 '-triphosphate-5 '-guanosine, m7G-3'mppp-G, which may equivalently be designated 3' 0-Me-m7G(5')ppp(5')G). The 3'-0 atom of the other, unaltered, guanosine becomes linked to the 5 '-terminal nucleotide of the capped polynucleotide (e.g., an mRNA). The N7- and 3'-0-methylated guanosine provides the terminal moiety of the capped polynucleotide (e.g., mRNA). Another exemplary cap is mCAP, which is similar to ARCA but has a 2'-0-methyl group on guanosine (i.e., N7,2'-0- dimethyl-guanosine-5 '-triphosphate-5 '-guanosine, m7Gm- ppp-G). A cap may be a dinucleotide cap analog. As a non-limiting example, the dinucleotide cap analog may be modified at different phosphate positions with a boranophosphate group or a phophoroselenoate group such as the dinucleotide cap analogs described in US Patent No. 8,519,110, the cap structures of which are herein incorporated by reference. Alternatively, a cap analog may be a N7-(4-chlorophenoxy ethyl) substituted dinucleotide cap analog known in the art and/or described herein. Non-limiting examples of N7- (4- chlorophenoxy ethyl) substituted dinucleotide cap analogs include a N7-(4- chlorophenoxyethyl)-G(5 )ppp(5 ')G and a N7-(4-chlorophenoxyethyl)-m3 '-OG(5 )ppp(5 ')G cap analog (see, e.g., the various cap analogs and the methods of synthesizing cap analogs described in Kore et al. Bioorganic & Medicinal Chemistry 201321 :4570-4574; the cap structures of which are herein incorporated by reference). In other instances, a cap analog useful in the polynucleotides of the present disclosure is a 4-chloro/bromophenoxy ethyl analog. While cap analogs allow for the concomitant capping of a polynucleotide in an in vitro transcription reaction, up to 20% of transcripts remain uncapped. This, as well as the structural differences of a cap analog from endogenous 5 '-cap structures of polynucleotides produced by the endogenous, cellular transcription machinery, may lead to reduced translational competency and reduced cellular stability. Alternative polynucleotides may also be capped post-transcriptionally, using enzymes, in order to generate more authentic 5'-cap structures. As used herein, the phrase "more authentic" refers to a feature that closely mirrors or mimics, either structurally or functionally, an endogenous or wild type feature. That is, a "more authentic" feature is better representative of an endogenous, wild-type, natural or physiological cellular function, and/or structure as compared to synthetic features or analogs of the prior art, or which outperforms the corresponding endogenous, wild-type, natural, or physiological feature in one or more respects. Non-limiting examples of more authentic 5 '-cap structures useful in the polynucleotides of the present disclosure are those which, among other things, have enhanced binding of cap binding proteins, increased half-life, reduced susceptibility to 5'-endonucleases, and/or reduced 5'- decapping, as compared to synthetic 5 '-cap structures known in the art (or to a wild-type, natural or physiological 5 '-cap structure). For example, recombinant Vaccinia Virus Capping Enzyme and recombinant 2'-0-methyltransferase enzyme can create a canonical 5 '-5 '- triphosphate linkage between the 5 '-terminal nucleotide of a polynucleotide and a guanosine cap nucleotide wherein the cap guanosine contains an N7-methylation and the 5 '-terminal nucleotide of the polynucleotide contains a 2'-0-methyl. Such a structure is termed the Capl structure. This cap results in a higher translational-competency, cellular stability, and a reduced activation of cellular pro-inflammatory cytokines, as compared, e.g., to other 5 ' cap analog structures known in the art. Other exemplary cap structures include 7mG(5 ')ppp(5 ')N,pN2p (Cap 0), 7mG(5 ')ppp(5 ')NlmpNp (Cap 1), 7mG(5 ')-ppp(5')NlmpN2mp (Cap 2), and m(7)Gpppm(3)(6,6,2')Apm(2')Apm(2')Cpm(2)(3,2')Up (Cap 4). Because the alternative polynucleotides may be capped post-transcriptionally, and because this process is more efficient, nearly 100% of the mRNA may be capped. This is in contrast to -80% when a cap analog is linked to a polynucleotide in the course of an in vitro transcription reaction. 5 '-terminal caps may include endogenous caps or cap analogs. A 5 '- terminal cap may include a guanosine analog. Useful guanosine analogs include inosine, N1- methyl- guanosine, 2'-fluoro-guanosine, 7-deaza-guanosine, 8-oxo-guanosine, 2-amino- guanosine, LNA- guanosine, and 2-azido-guanosine. In some cases, a polynucleotide contains a modified 5 '-cap. A modification on the 5 '-cap may increase the stability of polynucleotide, increase the half-life of the polynucleotide, and could increase the polynucleotide translational efficiency. The modified 5 '-cap may include, but is not limited to, one or more of the following modifications: modification at the 2'- and/or 3 '-position of a capped guanosine triphosphate (GTP), a replacement of the sugar ring oxygen (that produced the carbocyclic ring) with a methylene moiety (CH2), a modification at the triphosphate bridge moiety of the cap structure, or a modification at the nucleobase (G) moiety. A 5'-UTR may be provided as a flanking region to the mRNA. A 5’ -UTR may be homologous or heterologous to the coding region found in a polynucleotide. Multiple 5 '-UTRs may be included in the flanking region and may be the same or of different sequences. Any portion of the flanking regions, including none, may be codon optimized and any may independently contain one or more different structural or chemical alterations, before and/or after codon optimization. In one embodiment, an ORF encoding an antigen of the disclosure is codon optimized. Codon optimization methods are known in the art. For example, an ORF of any one or more of the sequences provided herein may be codon optimized. Codon optimization, in some embodiments, may be used to match codon frequencies in target and host organisms to ensure proper folding; bias GC content to increase mRNA stability or reduce secondary structures; minimize tandem repeat codons or base runs that may impair gene construction or expression; customize transcriptional and translational control regions; insert or remove protein trafficking sequences; remove/add post translation modification sites in encoded protein (e.g., glycosylation sites); add, remove or shuffle protein domains; insert or delete restriction sites; modify ribosome binding sites and mRNA degradation sites; adjust translational rates to allow the various domains of the protein to fold properly; or reduce or eliminate problem secondary structures within the polynucleotide. Codon optimization tools, algorithms and services are known in the art—non-limiting examples include services from GeneArt (Life Technologies), DNA2.0 (Menlo Park Calif.) and/or proprietary methods. In some embodiments, the open reading frame (ORF) sequence is optimized using optimization algorithms.To alter one or more properties of an mRNA, 5 '-UTRs which are heterologous to the coding region of an mRNA may be engineered. The mRNA may then be administered to cells, tissue or organisms and outcomes such as protein level, localization, and/or half-life may be measured to evaluate the beneficial effects the heterologous 5 ' -UTR may have on the mRNA. Variants of the 5 '-UTRs may be utilized wherein one or more nucleotides are added or removed to the termini, including A, T, C or G.5 '-UTRs may also be codon-optimized, or altered in any manner described herein. mRNAs may include a stem loop such as, but not limited to, a histone stem loop. The stem loop may be a nucleotide sequence that is about 25 or about 26 nucleotides in length. The histone stem loop may be located 3 '-relative to the coding region (e.g., at the 3 '-terminus of the coding region). As a non-limiting example, the stem loop may be located at the 3 '-end of a polynucleotide described herein. In some cases, an mRNA includes more than one stem loop (e.g., two stem loops). A stem loop may be located in a second terminal region of a polynucleotide. As a non-limiting example, the stem loop may be located within an untranslated region (e.g., 3'-UTR) in a second terminal region. In some cases, a mRNA which includes the histone stem loop may be stabilized by the addition of a 3 '-stabilizing region (e.g., a 3'- stabilizing region including at least one chain terminating nucleoside). Not wishing to be bound by theory, the addition of at least one chain terminating nucleoside may slow the degradation of a polynucleotide and thus can increase the half-life of the polynucleotide. In other cases, a mRNA, which includes the histone stem loop may be stabilized by an alteration to the 3 '-region of the polynucleotide that can prevent and/or inhibit the addition of oligio(U). In yet other cases, a mRNA, which includes the histone stem loop may be stabilized by the addition of an oligonucleotide that terminates in a 3 '-deoxynucleoside, 2',3 '-dideoxynucleoside 3 '-0- methylnucleosides, 3 -0- ethylnucleosides, 3 '-arabinosides, and other alternative nucleosides known in the art and/or described herein. In some instances, the mRNA of the present disclosure may include a histone stem loop, a poly-A region, and/or a 5 '-cap structure. The histone stem loop may be before and/or after the poly-A region. The polynucleotides including the histone stem loop and a poly-A region sequence may include a chain terminating nucleoside described herein. In other instances, the polynucleotides of the present disclosure may include a histone stem loop and a 5 '-cap structure. The 5 '-cap structure may include, but is not limited to, those described herein and/or known in the art. In some cases, the conserved stem loop region may include a miR sequence described herein. As a non-limiting example, the stem loop region may include the seed sequence of a miR sequence described herein. In another non- limiting example, the stem loop region may include a miR- 122 seed sequence. mRNA may include at least one histone stem-loop and a poly-A region or polyadenylation signal. In certain cases, the polynucleotide encoding for a histone stem loop and a poly-A region or a polyadenylation signal may code for a pathogen antigen or fragment thereof. In other cases, the polynucleotide encoding for a histone stem loop and a poly-A region or a polyadenylation signal may code for a therapeutic protein. In some cases, the polynucleotide encoding for a histone stem loop and a poly-A region or a polyadenylation signal may code for a tumor antigen or fragment thereof. In other cases, the polynucleotide encoding for a histone stem loop and a poly-A region or a polyadenylation signal may code for an allergenic antigen or an autoimmune self-antigen. An mRNA may include a polyA sequence and/or polyadenylation signal. A polyA sequence may be comprised entirely or mostly of adenine nucleotides or analogs or derivatives thereof. A polyA sequence may be a tail located adjacent to a 3' untranslated region of a nucleic acid. During RNA processing, a long chain of adenosine nucleotides (poly-A region) is normally added to messenger RNA (mRNA) molecules to increase the stability of the molecule. Immediately after transcription, the 3'-end of the transcript is cleaved to free a 3'-hydroxy. Then poly-A polymerase adds a chain of adenosine nucleotides to the RNA. The process, called polyadenylation, adds a poly-A region that is between 100 and 250 residues long. Unique poly- A region lengths may provide certain advantages to the alternative polynucleotides of the present disclosure. Generally, the length of a poly-A region of the present disclosure is at least 30 nucleotides in length. In another embodiment, the poly-A region is at least 35 nucleotides in length. In another embodiment, the length is at least 40 nucleotides. In another embodiment, the length is at least 45 nucleotides. In another embodiment, the length is at least 55 nucleotides. In another embodiment, the length is at least 60 nucleotides. In another embodiment, the length is at least 70 nucleotides. In another embodiment, the length is at least 80 nucleotides. In another embodiment, the length is at least 90 nucleotides. In another embodiment, the length is at least 100 nucleotides. In another embodiment, the length is at least 120 nucleotides. In another embodiment, the length is at least 140 nucleotides. In another embodiment, the length is at least 160 nucleotides. In another embodiment, the length is at least 180 nucleotides. In another embodiment, the length is at least 200 nucleotides. In another embodiment, the length is at least 250 nucleotides. In another embodiment, the length is at least 300 nucleotides. In another embodiment, the length is at least 350 nucleotides. In another embodiment, the length is at least 400 nucleotides. In another embodiment, the length is at least 450 nucleotides. In another embodiment, the length is at least 500 nucleotides. In another embodiment, the length is at least 600 nucleotides. In another embodiment, the length is at least 700 nucleotides. In another embodiment, the length is at least 800 nucleotides. In another embodiment, the length is at least 900 nucleotides. In another embodiment, the length is at least 1000 nucleotides. In another embodiment, the length is at least 1100 nucleotides. In another embodiment, the length is at least 1200 nucleotides. In another embodiment, the length is at least 1300 nucleotides. In another embodiment, the length is at least 1400 nucleotides. In another embodiment, the length is at least 1500 nucleotides. In another embodiment, the length is at least 1600 nucleotides. In another embodiment, the length is at least 1700 nucleotides. In another embodiment, the length is at least 1800 nucleotides. In another embodiment, the length is at least 1900 nucleotides. In another embodiment, the length is at least 2000 nucleotides. In another embodiment, the length is at least 2500 nucleotides. In another embodiment, the length is at least 3000 nucleotides. In some instances, the poly-A region may be 80 nucleotides, 120 nucleotides, 160 nucleotides in length on an alternative polynucleotide molecule described herein. In other instances, the poly-A region may be 20, 40, 80, 100, 120, 140 or 160 nucleotides in length on an alternative polynucleotide molecule described herein. In some cases, the poly-A region is designed relative to the length of the overall alternative polynucleotide. This design may be based on the length of the coding region of the alternative polynucleotide, the length of a particular feature or region of the alternative polynucleotide (such as mRNA) or based on the length of the ultimate product expressed from the alternative polynucleotide. When relative to any feature of the alternative polynucleotide (e.g., other than the mRNA portion which includes the poly-A region) the poly-A region may be 10, 20, 30, 40, 50, 60, 70, 80, 90 or 100% greater in length than the additional feature. The poly-A region may also be designed as a fraction of the alternative polynucleotide to which it belongs. In this context, the poly-A region may be 10, 20, 30, 40, 50, 60, 70, 80, or 90% or more of the total length of the construct or the total length of the construct minus the poly-A region. In certain cases, engineered binding sites and/or the conjugation of mRNA for poly-A binding protein may be used to enhance expression. The engineered binding sites may be sensor sequences which can operate as binding sites for ligands of the local microenvironment of the mRNA. As a non-limiting example, the mRNA may include at least one engineered binding site to alter the binding affinity of poly-A binding protein (PABP) and analogs thereof. The incorporation of at least one engineered binding site may increase the binding affinity of the PABP and analogs thereof. Additionally, multiple distinct mRNA may be linked together to the PABP (poly-A binding protein) through the 3'-end using alternative nucleotides at the 3'- terminus of the poly-A region. Transfection experiments can be conducted in relevant cell lines at and protein production can be assayed by ELISA at 12 hours, 24 hours, 48 hours, 72 hours, and day 7 post-transfection. As a non-limiting example, the transfection experiments may be used to evaluate the effect on PABP or analogs thereof binding affinity as a result of the addition of at least one engineered binding site. In certain cases, a poly-A region may be used to modulate translation initiation. While not wishing to be bound by theory, the poly-A region recruits PABP which in turn can interact with translation initiation complex and thus may be essential for protein synthesis. In some cases, a poly-A region may also be used in the present disclosure to protect against 3 '-5 '-exonuclease digestion. In some instances, an mRNA may include a polyA-G Quartet. The G- quartet is a cyclic hydrogen bonded array of four guanosine nucleotides that can be formed by G-rich sequences in both DNA and RNA. In this embodiment, the G-quartet is incorporated at the end of the poly-A region. The resultant mRNA may be assayed for stability, protein production and other parameters including half-life at various time points. It has been discovered that the polyA-G quartet results in protein production equivalent to at least 75% of that seen using a poly-A region of 120 nucleotides alone. In some cases, mRNA may include a poly-A region and may be stabilized by the addition of a 3 '-stabilizing region. The mRNA with a poly-A region may further include a 5 '-cap structure. In other cases, mRNA may include a poly- A-G Quartet. The mRNA with a poly-A-G Quartet may further include a 5 '-cap structure. In some cases, the 3 '-stabilizing region which may be used to stabilize mRNA includes a poly-A region or poly-A-G Quartet. In other cases, the 3 '-stabilizing region which may be used with the present disclosure include a chain termination nucleoside such as 3 '-deoxyadenosine (cordycepin), 3 '-deoxyuridine, 3 '- deoxycytosine, 3 '-deoxyguanosine, 3 '-deoxy thymine, 2',3'- dideoxynucleosides, such as 2',3 '- dideoxyadenosine, 2',3 '-dideoxyuridine, 2',3 '- dideoxycytosine, 2', 3 '- dideoxyguanosine, 2',3 '-dideoxythymine, a 2'-deoxynucleoside, or an O-methylnucleoside. In other cases, mRNA which includes a polyA region or a poly-A-G Quartet may be stabilized by an alteration to the 3 '-region of the polynucleotide that can prevent and/or inhibit the addition of oligio(U). In yet other instances, mRNA which includes a poly-A region or a poly-A-G Quartet may be stabilized by the addition of an oligonucleotide that terminates in a 3 '-deoxynucleoside, 2',3 '-dideoxynucleoside 3 -O- methylnucleosides, 3 '-O-ethylnucleosides, 3 '-arabinosides, and other alternative nucleosides known in the art and/or described herein. In an embodiment, the mRNA vaccines of the disclosure comprise lipids. The lipids and modRNA can together form nanoparticles. The lipids can encapsulate the mRNA in the form of a lipid nanoparticle (LNP) to aid cell entry and stability of the RNA/lipid nanoparticles. Lipid nanoparticles may include a lipid component and one or more additional components, such as a therapeutic and/or prophylactic. A LNP may be designed for one or more specific applications or targets. The elements of a LNP may be selected based on a particular application or target, and/or based on the efficacy, toxicity, expense, ease of use, availability, or other feature of one or more elements. Similarly, the particular formulation of a LNP may be selected for a particular application or target according to, for example, the efficacy and toxicity of particular combinations of elements. The efficacy and tolerability of a LNP formulation may be affected by the stability of the formulation. Lipid nanoparticles may be designed for one or more specific applications or targets. For example, a LNP may be designed to deliver a therapeutic and/or prophylactic such as an RNA to a particular cell, tissue, organ, or system or group thereof in a mammal's body. The LNP delivery system may have adjuvant effects which enhance the immunogenicity of an encoded antigen and/or other antigens in the composition. Physiochemical properties of lipid nanoparticles may be altered to increase selectivity for particular bodily targets. For instance, particle sizes may be adjusted based on the fenestration sizes of different organs. The therapeutic and/or prophylactic included in a LNP may also be selected based on the desired delivery target or targets. For example, a therapeutic and/or prophylactic may be selected for a particular indication, condition, disease, or disorder and/or for delivery to a particular cell, tissue, organ, or system or group thereof (e.g., localized or specific delivery). In certain embodiments, a LNP may include an mRNA encoding a polypeptide of interest capable of being translated within a cell to produce the polypeptide of interest. Such a composition may be designed to be specifically delivered to a particular organ. In some embodiments, a composition may be designed to be specifically delivered to a mammalian liver. In some embodiments, a composition may be designed to be specifically delivered to a lymph node. In some embodiments, a composition may be designed to be specifically delivered to a mammalian spleen. A LNP may include one or more components described herein. In some embodiments, the LNP formulation of the disclosure includes at least one lipid nanoparticle component. Lipid nanoparticles may include a lipid component and one or more additional components, such as a therapeutic and/or prophylactic, such as a nucleic acid. A LNP may be designed for one or more specific applications or targets. The elements of a LNP may be selected based on a particular application or target, and/or based on the efficacy, toxicity, expense, ease of use, availability, or other feature of one or more elements. Similarly, the particular formulation of a LNP may be selected for a particular application or target according to, for example, the efficacy and toxicity of particular combination of elements. The efficacy and tolerability of a LNP formulation may be affected by the stability of the formulation. In some embodiments, for example, a polymer may be included in and/or used to encapsulate or partially encapsulate a LNP. A polymer may be biodegradable and/or biocompatible. A polymer may be selected from, but is not limited to, polyamines, polyethers, polyamides, polyesters, poly carbamates, polyureas, polycarbonates, polystyrenes, polyimides, polysulfones, polyurethanes, polyacetylenes, polyethylenes, polyethyleneimines, polyisocyanates, polyacrylates, polymethacrylates, polyacrylonitriles, and polyarylates. For example, a polymer may include poly(caprolactone) (PCL), ethylene vinyl acetate polymer (EVA), poly(lactic acid) (PLA), poly(L-lactic acid) (PLLA), poly(gly colic acid) (PGA), poly(lactic acid-co-gly colic acid) (PLGA), poly(L-lactic acid-co-gly colic acid) (PLLGA), poly(D,L-lactide) (PDLA), poly(L- lactide) (PLLA), poly(D,L-lactide-co-caprolactone), poly(D,L-lactide-co- caprolactone-co- glycolide), poly(D,L-lactide-co-PEO-co-D,L-lactide), poly(D,L-lactide-co-PPO- co-D,L-lactide), polyalkyl cyanoacrylate, polyurethane, poly-L-lysine (PLL), hydroxypropyl methacrylate (HPMA), polyethyleneglycol, poly-L-glutamic acid, poly(hydroxy acids), polyanhydrides, polyorthoesters, poly(ester amides), polyamides, poly(ester ethers), polycarbonates, polyalkylenes such as polyethylene and polypropylene, polyalkylene glycols such as poly(ethylene glycol) (PEG), polyalkylene oxides (PEO), polyalkylene terephthalates such as poly(ethylene terephthalate), polyvinyl alcohols (PVA), polyvinyl ethers, polyvinyl esters such as poly(vinyl acetate), polyvinyl halides such as poly(vinyl chloride) (PVC), polyvinylpyrrolidone (PVP), polysiloxanes, polystyrene, polyurethanes, derivatized celluloses such as alkyl celluloses, hydroxyalkyl celluloses, cellulose ethers, cellulose esters, nitro celluloses, hydroxypropylcellulose, carboxymethylcellulose, polymers of acrylic acids, such as poly(methyl(meth)acrylate) (PMMA), poly(ethyl(meth)acrylate), poly(butyl(meth)acrylate), poly(isobutyl(meth)acrylate), poly(hexyl(meth)acrylate), poly(isodecyl(meth)acrylate), poly(lauryl(meth)acrylate), poly(phenyl(meth)acrylate), poly(methyl acrylate), poly(isopropyl acrylate), poly(isobutyl acrylate), poly(octadecyl acrylate) and copolymers and mixtures thereof, polydioxanone and its copolymers, polyhydroxyalkanoates, polypropylene fumarate, polyoxymethylene, poloxamers, poloxamines, poly(ortho)esters, poly(butyric acid), poly(valeric acid), poly(lactide-co-caprolactone), trimethylene carbonate, poly(N-acryloylmorpholine) (PAcM), poly(2-methyl-2-oxazoline) (PMOX), poly(2-ethyl-2-oxazoline) (PEOZ), poly(2- oxazoline)(POZ), which is a synthetic, water-soluble, and low-viscosity polymer, and polyglycerol. In some embodiments, the amount of polymer-lipid in the lipid composition of a pharmaceutical composition disclosed herein ranges from about 0.1 mol % to about 5 mol %, from about 0.5 mol % to about 5 mol %, from about 1 mol % to about 5 mol %, from about 1.5 mol % to about 5 mol %, from about 2 mol % to about 5 mol %, from about 0.1 mol % to about 4 mol %, from about 0.5 mol % to about 4 mol %, from about 1 mol % to about 4 mol %, from about 1.5 mol % to about 4 mol %, from about 2 mol % to about 4 mol %, from about 0.1 mol % to about 3 mol %, from about 0.5 mol % to about 3 mol %, from about 1 mol % to about 3 mol %, from about 1.5 mol % to about 3 mol %, from about 2 mol % to about 3 mol %, from about 0.1 mol % to about 2 mol %, from about 0.5 mol % to about 2 mol %, from about 1 mol % to about 2 mol %, from about 1.5 mol % to about 2 mol %, from about 0.1 mol % to about 1.5 mol %, from about 0.5 mol % to about 1.5 mol %, or from about 1 mol % to about 1.5 mol %. In some embodiments, the amount of polymer-lipid in the lipid composition disclosed herein is about 2 mol %. In some embodiments, the amount of polymer-lipid in the lipid composition disclosed herein is about 1.5 mol %. In some embodiments, the amount of polymer-lipid in the lipid composition disclosed herein is at least about 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, 1, 1.1, 1.2, 1.3, 1.4, 1.5, 1.6, 1.7, 1.8, 1.9, 2, 2.1, 2.2, 2.3, 2.4, 2.5, 2.6, 2.7, 2.8, 2.9, 3, 3.1, 3.2, 3.3, 3.4, 3.5, 3.6, 3.7, 3.8, 3.9, 4, 4.1, 4.2, 4.3, 4.4, 4.5, 4.6, 4.7, 4.8, 4.9, or 5 mol %. In some aspects, the lipid composition of the pharmaceutical compositions disclosed herein does not comprise a PEG-lipid. Surface altering agents may include, but are not limited to, anionic proteins (e.g., bovine serum albumin), surfactants (e.g., cationic surfactants such as dimethyldioctadecyl- ammonium bromide), sugars or sugar derivatives (e.g., cyclodextrin), nucleic acids, polymers (e.g., heparin, polyethylene glycol, and poloxamer), mucolytic agents (e.g., acetylcysteine, mugwort, bromelain, papain, clerodendrum, bromhexine, carbocisteine, eprazinone, mesna, ambroxol, sobrerol, domiodol, letosteine, stepronin, tiopronin, gelsolin, thymosin β4, dornase alfa, neltenexine, and erdosteine), and DNases (e.g., rhDNase). A surface altering agent may be disposed within a nanoparticle and/or on the surface of a LNP (e.g., by coating, adsorption, covalent linkage, or other process). A LNP may also comprise one or more functionalized lipids. For example, a lipid may be functionalized with an alkyne group that, when exposed to an azide under appropriate reaction conditions, may undergo a cycloaddition reaction. In particular, a lipid bilayer may be functionalized in this fashion with one or more groups useful in facilitating membrane permeation, cellular recognition, or imaging. The surface of a LNP may also be conjugated with one or more useful antibodies. Functional groups and conjugates useful in targeted cell delivery, imaging, and membrane permeation are well known in the art. In addition to these components, lipid nanoparticles may include any substance useful in pharmaceutical compositions. For example, the lipid nanoparticle may include one or more pharmaceutically acceptable excipients or accessory ingredients such as, but not limited to, one or more solvents, dispersion media, diluents, dispersion aids, suspension aids, surface active agents, buffering agents, preservatives, and other species. Surface active agents and/or emulsifiers may include, but are not limited to, natural emulsifiers (e.g., acacia, alginic acid, sodium alginate, cholesterol, and lecithin), sorbitan fatty acid esters (e.g., polyoxy ethylene sorbitan monolaurate [TWEEN®20], polyoxy ethylene sorbitan [TWEEN® 60], polyoxy ethylene sorbitan monooleate [TWEEN®80], sorbitan monopalmitate [SPAN®40], sorbitan monostearate [SPAN®60], sorbitan tristearate [SPAN®65], glyceryl monooleate, sorbitan monooleate [SPAN®80]), polyoxyethylene esters (e.g., polyoxyethylene monostearate [MYRJ® 45], polyoxyethylene hydrogenated castor oil, polyethoxylated castor oil, polyoxymethylene stearate, and SOLUTOL®), sucrose fatty acid esters, polyethylene glycol fatty acid esters (e.g., CREMOPHOR®), polyoxyethylene ethers, (e.g., polyoxyethylene lauryl ether [BRIJ® 30]), poly(vinyl-pyrrolidone), diethylene glycol monolaurate, triethanolamine oleate, sodium oleate, potassium oleate, ethyl oleate, oleic acid, ethyl laurate, sodium lauryl sulfate, PLURONIC®F 68, POLOXAMER® 188, cetrimonium bromide, cetylpyridinium chloride, benzalkonium chloride, docusate sodium, and/or combinations thereof. Examples of preservatives may include, but are not limited to, antioxidants, chelating agents, free radical scavengers, antimicrobial preservatives, antifungal preservatives, alcohol preservatives, acidic preservatives, and/or other preservatives. Examples of antioxidants include, but are not limited to, alpha tocopherol, ascorbic acid, ascorbyl palmitate, butylated hydroxyanisole, butylated hydroxy toluene, monothioglycerol, potassium metabisulfite, propionic acid, propyl gallate, sodium ascorbate, sodium bisulfite, sodium metabisulfite, and/or sodium sulfite. Examples of chelating agents include ethylenediaminetetraacetic acid (EDTA), citric acid monohydrate, disodium edetate, dipotassium edetate, edetic acid, fumaric acid, malic acid, phosphoric acid, sodium edetate, tartaric acid, and/or trisodium edetate. Examples of antimicrobial preservatives include, but are not limited to, benzalkonium chloride, benzethonium chloride, benzyl alcohol, bronopol, cetrimide, cetylpyridinium chloride, chlorhexidine, chlorobutanol, chlorocresol, chloroxylenol, cresol, ethyl alcohol, glycerin, hexetidine, imidurea, phenol, phenoxyethanol, phenylethyl alcohol, phenylmercuric nitrate, propylene glycol, and/or thimerosal. Examples of antifungal preservatives include, but are not limited to, butyl paraben, methyl paraben, ethyl paraben, propyl paraben, benzoic acid, hydroxybenzoic acid, potassium benzoate, potassium sorbate, sodium benzoate, sodium propionate, and/or sorbic acid. Examples of alcohol preservatives include, but are not limited to, ethanol, polyethylene glycol, benzyl alcohol, phenol, phenolic compounds, bisphenol, chlorobutanol, hydroxybenzoate, and/or phenylethyl alcohol. Examples of acidic preservatives include, but are not limited to, vitamin A, vitamin C, vitamin E, beta-carotene, citric acid, acetic acid, dehydroascorbic acid, ascorbic acid, sorbic acid, and/or phytic acid. Other preservatives include, but are not limited to, tocopherol, tocopherol acetate, deteroxime mesylate, cetrimide, butylated hydroxyanisole (BHA), butylated hydroxy toluene (BHT), ethylenediamine, sodium lauryl sulfate (SLS), sodium lauryl ether sulfate (SLES), sodium bisulfite, sodium metabisulfite, potassium sulfite, potassium metabisulfite, GLYDANT PLUS®, PHENONIP®, methylparaben, GERMALL® 115, GERMABEN®II, NEOLONE™, KATHON™, and/or EUXYL®. An exemplary free radical scavenger includes butylated hydroxytoluene (BHT or butylhydroxytoluene) or deferoxamine. Examples of buffering agents include, but are not limited to, citrate buffer solutions, acetate buffer solutions, phosphate buffer solutions, ammonium chloride, calcium carbonate, calcium chloride, calcium citrate, calcium glubionate, calcium gluceptate, calcium gluconate, d- gluconic acid, calcium glycerophosphate, calcium lactate, calcium lactobionate, propanoic acid, calcium levulinate, pentanoic acid, dibasic calcium phosphate, phosphoric acid, tribasic calcium phosphate, calcium hydroxide phosphate, potassium acetate, potassium chloride, potassium gluconate, potassium mixtures, dibasic potassium phosphate, monobasic potassium phosphate, potassium phosphate mixtures, sodium acetate, sodium bicarbonate, sodium chloride, sodium citrate, sodium lactate, dibasic sodium phosphate, monobasic sodium phosphate, sodium phosphate mixtures, tromethamine, amino-sulfonate buffers (e.g., HEPES), magnesium hydroxide, aluminum hydroxide, alginic acid, pyrogen-free water, isotonic saline, Ringer's solution, ethyl alcohol, Tris buffer, and/or combinations thereof. In some embodiments, the formulation including a LNP may further include a salt, such as a chloride salt. In some embodiments, the formulation including a LNP may further includes a sugar such as a disaccharide. In some embodiments, the formulation further includes a sugar but not a salt, such as a chloride salt.In some embodiments, a LNP may further include one or more small hydrophobic molecules such as a vitamin (e.g., vitamin A or vitamin E) or a sterol. Carbohydrates may include simple sugars (e.g., glucose) and polysaccharides (e.g., glycogen and derivatives and analogs thereof). The characteristics of a LNP may depend on the components thereof. For example, a LNP including cholesterol as a structural lipid may have different characteristics than a LNP that includes a different structural lipid. As used herein, the term “structural lipid” refers to sterols and also to lipids containing sterol moieties. As defined herein, “sterols” are a subgroup of steroids consisting of steroid alcohols. In some embodiments, the structural lipid is a steroid. In some embodiments, the structural lipid is cholesterol. In some embodiments, the structural lipid is an analog of cholesterol. In some embodiments, the structural lipid is alpha-tocopherol. The lipid nanoparticle compositions may include one or more structural lipids. Incorporation of structural lipids in the lipid nanoparticle may help mitigate aggregation of other lipids in the particle. Structural lipids can be selected from the group including but not limited to, cholesterol, fecosterol, sitosterol, β-sitosterol, ergosterol, campesterol, stigmasterol, brassicasterol, tomatidine, tomatine, ursolic acid, alpha-tocopherol, hopanoids, phytosterols, steroids, and mixtures thereof. In some embodiments, the structural lipid is a sterol. As defined herein, “sterols” are a subgroup of steroids consisting of steroid alcohols. In some embodiments, the structural lipid is a steroid. In some embodiments, the structural lipid is cholesterol. In certain embodiments, the structural lipid is an analog of cholesterol. In some embodiments, the structural lipid is alpha-tocopherol. In some preferred embodiments, the the comprses stostano. In some embodiments, the structural lipid is a sitosterol, a stigmasterol, a campesterol, a sitostanol, a campestanol, a brassicasterol, a fucosterol, beta-sitosterol, stigmastanol, beta- sitostanol, ergosterol, lupeol, cycloartenol, Δ5-avenaserol, Δ7-avenaserol or a Δ7-stigmasterol, including analogs, salts or esters thereof, alone or in combination. In some embodiments, the sterol component of a LNP of the disclosure is a single phytosterol. In some embodiments, the phytosterol component of a LNP of the disclosure is a mixture of different phytosterols (e.g.2, 3, 4, 5 or 6 different phytosterols). In some embodiments, the phytosterol component of an LNP of the disclosure is a blend of one or more phytosterols and one or more zoosterols, such as a blend of a phytosterol (e.g., a sitosterol, such as beta-sitosterol) and cholesterol. In some embodiments, the phytosterol is β-sitosterol, campesterol, sigmastanol, or any combination thereof. In some embodiments, the phytosterol is β-sitosterol. In some embodiments, the one or more structural lipids comprises a mixture of β-sitosterol, campesterol, and stigmasterol. In some embodiments, the one or more structural lipids comprises a mixture of β-sitosterol and cholesterol. In one embodiment, the structural lipid is selected from selected from β-sitosterol and cholesterol. In an embodiment, the structural lipid is β-sitosterol. In an embodiment, the structural lipid is cholesterol. In some embodiments, the one or more structural lipids comprises about 35% to about 85% of β-sitosterol, about 5% to about 35% stigmasterol, and about 5% to about 35% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 80% of β-sitosterol, about 10% to about 30% stigmasterol, and about 10% to about 30% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 70% of β-sitosterol, about 10% to about 25% stigmasterol, and about 10% to about 25% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 70% of β-sitosterol, about 15% to about 25% stigmasterol, and about 15% to about 25% of campesterol. In some embodiments, the one or more structural lipids comprises about 35% to about 45% of β-sitosterol, about 20% to about 30% stigmasterol, and about 20% to about 30% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 50% of β-sitosterol, about 25% to about 35% stigmasterol, and about 25% to about 35% of campesterol. In some embodiments, the one or more structural lipids comprises about 65% to about 75% of β-sitosterol, about 5% to about 15% stigmasterol, and about 5% to about 15% of campesterol. In some embodiments, the one or more structural lipids comprises about 35% to about 85% of β-sitosterol, about 5% to about 35% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 80% of β-sitosterol, about 10% to about 30% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 70% of β-sitosterol, about 10% to about 25% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 70% of β- sitosterol, about 15% to about 25% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 35% to about 45% of β- sitosterol, about 20% to about 30% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 40% to about 50% of β- sitosterol, about 25% to about 35% stigmasterol, and 0% of campesterol. In some embodiments, the one or more structural lipids comprises about 65% to about 75% of β- sitosterol, about 5% to about 15% stigmasterol, and 0% of campesterol. Accordingly, in some preferred embodiments, the composition does not comprise campesterol. In some embodiments, the composition comprises one or more structural lipids comprises about 10% to about 30% of cholesterol, about 10% to about 30% β-sitosterol, and about 10% to about 30% stigmasterol, and 0% campesterol. See, for example, Table 49. In some embodiments, the composition further comprises about 30-50% cationic lipid and about 5- 25% phospholipid. In some embodiments, the mol % of the one or more structural lipids is between about 1% and 50% of the mol % of the compound having the structure of any of the foregoing compounds present in the lipid nanoparticle. In some embodiments, the mol % of the one or more structural lipids is between about 10% and 40% of the mol % of the compound having the structure of any of the foregoing compounds present in the lipid nanoparticle. In some embodiments, the mol % of the one or more structural lipids is between about 20% and 30% of the mol % of the compound having the structure of any of the foregoing compounds present in the lipid nanoparticle. In some embodiments, the mol % of the one or more structural lipids is about 30% of the mol % of the compound having the structure of any of the foregoing compounds present in the lipid nanoparticle. In some embodiments, the lipid nanoparticle compositions described herein can comprise about 20 mol% to about 60 mol% structural lipid. In some embodiments, the lipid nanoparticle compositions comprise about 30 mol% to about 50 mol% of structural lipid. In some embodiments, the lipid nanoparticle compositions comprise about 35 mol% to about 45 mol% of structural lipid. In some embodiments, the lipid nanoparticle compositions comprise about 37 mol% to about 42 mol% of structural lipid. In some embodiments, the lipid nanoparticle compositions comprise about 35, about 36, about 37, about 38, about 39, or about 40 mol% of structural lipid. In some embodiments, the nanoparticle comprises about 39 to about 40 mol% structural lipid. In some embodiments, a LNP of the invention comprises an N:P ratio of from about 2:1 to about 30:1. In some embodiments, a LNP of the invention comprises an N:P ratio of about 6:1. In some embodiments, a LNP of the invention comprises an N:P ratio of about 3:1, 4:1, or 5:1. In some embodiments, the characteristics of a LNP may depend on the absolute or relative amounts of its components. For instance, a LNP including a higher molar fraction of a phospholipid may have different characteristics than a LNP including a lower molar fraction of a phospholipid. Characteristics may also vary depending on the method and conditions of preparation of the lipid nanoparticle. In general, phospholipids comprise a phospholipid moiety and one or more fatty acid moieties. A phospholipid moiety can be selected, for example, from the non-limiting group consisting of phosphatidyl choline, phosphatidyl ethanolamine, phosphatidyl glycerol, phosphatidyl serine, phosphatidic acid, 2-lysophosphatidyl choline, and a sphingomyelin. A fatty acid moiety can be selected, for example, from the non-limiting group consisting of lauric acid, myristic acid, myristoleic acid, palmitic acid, palmitoleic acid, stearic acid, oleic acid, linoleic acid, alpha-linolenic acid, erucic acid, phytanoic acid, arachidic acid, arachidonic acid, eicosapentaenoic acid, behenic acid, docosapentaenoic acid, and docosahexaenoic acid. Particular phospholipids can facilitate fusion to a membrane. In some embodiments, a cationic phospholipid can interact with one or more negatively charged phospholipids of a membrane (e.g., a cellular or intracellular membrane). Fusion of a phospholipid to a membrane can allow one or more elements (e.g., a therapeutic agent) of a lipid-containing composition (e.g., LNPs) to pass through the membrane permitting, e.g., delivery of the one or more elements to a target tissue. Non-natural phospholipid species including natural species with modifications and substitutions including branching, oxidation, cyclization, and alkynes are also contemplated. In some embodiments, a phospholipid can be functionalized with or cross-linked to one or more alkynes (e.g., an alkenyl group in which one or more double bonds is replaced with a triple bond). Under appropriate reaction conditions, an alkyne group can undergo a copper-catalyzed cycloaddition upon exposure to an azide. Such reactions can be useful in functionalizing a lipid bilayer of a nanoparticle composition to facilitate membrane permeation or cellular recognition or in conjugating a nanoparticle composition to a useful component such as a targeting or imaging moiety (e.g., a dye). Phospholipids include, but are not limited to, glycerophospholipids such as phosphatidylcholines, phosphatidyl-ethanolamines, phosphatidylserines, phosphatidylinositols, phosphatidy glycerols, and phosphatidic acids. Phospholipids also include phosphosphingolipid, such as sphingomyelin. In some embodiments, a phospholipid useful or potentially useful in the present invention is an analog or variant of DSPC. Lipid nanoparticles may be characterized by a variety of methods. For example, microscopy (e.g., transmission electron microscopy or scanning electron microscopy) may be used to examine the morphology and size distribution of a LNP. Dynamic light scattering or potentiometry (e.g., potentiometric titrations) may be used to measure zeta potentials. Dynamic light scattering may also be utilized to determine particle sizes. Instruments such as the Zetasizer Nano ZS (Malvern Instruments Ltd, Malvern, Worcestershire, UK) may also be used to measure multiple characteristics of a LNP, such as particle size, polydispersity index, and zeta potential. The mean size of a LNP may be between 10s of nm and 100s of nm, e.g., measured by dynamic light scattering (DLS). For example, the mean size may be from about 40 nm to about 150 nm, such as about 40 nm, 45 nm, 50 nm, 55 nm, 60 nm, 65 nm, 70 nm, 75 nm, 80 nm, 85 nm, 90 nm, 95 nm, 100 nm, 105 nm, 110 nm, 115 nm, 120 nm, 125 nm, 130 nm, 135 nm, 140 nm, 145 nm, or 150 nm. In some embodiments, the mean size of a LNP may be from about 50 nm to about 100 nm, from about 50 nm to about 90 nm, from about 50 nm to about 80 nm, from about 50 nm to about 70 nm, from about 50 nm to about 60 nm, from about 60 nm to about 100 nm, from about 60 nm to about 90 nm, from about 60 nm to about 80 nm, from about 60 nm to about 70 nm, from about 70 nm to about 100 nm, from about 70 nm to about 90 nm, from about 70 nm to about 80 nm, from about 80 nm to about 100 nm, from about 80 nm to about 90 nm, or from about 90 nm to about 100 nm. In certain embodiments, the mean size of a LNP may be from about 70 nm to about 100 nm. In a particular embodiment, the mean size may be about 80 nm. In other embodiments, the mean size may be about 100 nm. A LNP may be relatively homogenous. A polydispersity index may be used to indicate the homogeneity of a LNP, e.g., the particle size distribution of the lipid nanoparticles. A small (e.g., less than 0.3) polydispersity index generally indicates a narrow particle size distribution. A LNP may have a polydispersity index from about 0 to about 0.25, such as 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24, or 0.25. In some embodiments, the polydispersity index of a LNP may be from about 0.10 to about 0.20. The zeta potential of a LNP may be used to indicate the electrokinetic potential of the composition. For example, the zeta potential may describe the surface charge of a LNP. Lipid nanoparticles with relatively low charges, positive or negative, are generally desirable, as more highly charged species may interact undesirably with cells, tissues, and other elements in the body. In some embodiments, the zeta potential of a LNP may be from about -10 mV to about +20 mV, from about -10 mV to about +15 mV, from about -10 mV to about +10 mV, from about - 10 mV to about +5 mV, from about -10 mV to about 0 mV, from about -10 mV to about - 5 mV, from about -5 mV to about +20 mV, from about -5 mV to about +15 mV, from about -5 mV to about +10 mV, from about -5 mV to about +5 mV, from about -5 mV to about 0 mV, from about 0 mV to about +20 mV, from about 0 mV to about +15 mV, from about 0 mV to about +10 mV, from about 0 mV to about +5 mV, from about +5 mV to about +20 mV, from about +5 mV to about +15 mV, or from about +5 mV to about +10 mV. The efficiency of encapsulation of a therapeutic and/or prophylactic describes the amount of therapeutic and/or prophylactic that is encapsulated or otherwise associated with a LNP after preparation, relative to the initial amount provided. The encapsulation efficiency is desirably high (e.g., close to 100%). The encapsulation efficiency may be measured, for example, by comparing the amount of therapeutic and/or prophylactic in a solution containing the lipid nanoparticle before and after breaking up the lipid nanoparticle with one or more organic solvents or detergents. Fluorescence may be used to measure the amount of free therapeutic and/or prophylactic (e.g., RNA) in a solution. For example, if 97 mg of mRNA are encapsulated in a composition out of a total 100 mg of mRNA initially provided to the composition, the encapsulation efficiency may be given as 97%. For the lipid nanoparticles described herein, the encapsulation efficiency of a therapeutic and/or prophylactic may be at least 50%, for example 50%, 55%, 60%, 65%, 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100%. In some embodiments, the encapsulation efficiency may be at least 80%. In certain embodiments, the encapsulation efficiency may be at least 90%. A LNP may optionally comprise one or more coatings. For example, a LNP may be formulated in a capsule, film, or tablet having a coating. A capsule, film, or tablet including a composition described herein may have any useful size, tensile strength, hardness, or density. Formulations comprising amphiphilic polymers and lipid nanoparticles may be formulated in whole or in part as pharmaceutical compositions. Pharmaceutical compositions may include one or more amphiphilic polymers and one or more lipid nanoparticles. For example, a pharmaceutical composition may include one or more amphiphilic polymers and one or more lipid nanoparticles including one or more different therapeutics and/or prophylactics. Pharmaceutical compositions may further include one or more pharmaceutically acceptable excipients or accessory ingredients such as those described herein. General guidelines for the formulation and manufacture of pharmaceutical compositions and agents are available, for example, in Remington's The Science and Practice of Pharmacy, 21st Edition, A. R. Gennaro; Lippincott, Williams & Wilkins, Baltimore, MD, 2006. Conventional excipients and accessory ingredients may be used in any pharmaceutical composition, except insofar as any conventional excipient or accessory ingredient may be incompatible with one or more components of a LNP or the one or more amphiphilic polymers in the formulation of the disclosure. An excipient or accessory ingredient may be incompatible with a component of a LNP or the amphiphilic polymer of the formulation if its combination with the component or amphiphilic polymer may result in any undesirable biological effect or otherwise deleterious effect. In some embodiments, one or more excipients or accessory ingredients may make up greater than 50% of the total mass or volume of a pharmaceutical composition including a LNP. For example, the one or more excipients or accessory ingredients may make up 50%, 60%, 70%, 80%, 90%, or more of a pharmaceutical convention. In some embodiments, a pharmaceutically acceptable excipient is at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% pure. In some embodiments, an excipient is approved for use in humans and for veterinary use. In some embodiments, an excipient is approved by United States Food and Drug Administration. In some embodiments, an excipient is pharmaceutical grade. In some embodiments, an excipient meets the standards of the United States Pharmacopoeia (USP), the European Pharmacopoeia (EP), the British Pharmacopoeia, and/or the International Pharmacopoeia. Relative amounts of the one or more amphiphilic polymers, the one or more lipid nanoparticles, the one or more pharmaceutically acceptable excipients, and/or any additional ingredients in a pharmaceutical composition in accordance with the present disclosure will vary, depending upon the identity, size, and/or condition of the subject treated and further depending upon the route by which the composition is to be administered. By way of example, a pharmaceutical composition may comprise between 0.1% and 100% (wt/wt) of one or more lipid nanoparticles. As another example, a pharmaceutical composition may comprise between 0.1% and 15% (wt/vol) of one or more amphiphilic polymers (e.g., 0.5%, 1%, 2.5%, 5%, 10%, or 12.5% w/v). In certain embodiments, the lipid nanoparticles and/or pharmaceutical compositions of the disclosure are refrigerated or frozen for storage and/or shipment (e.g., being stored at a temperature of 4 °C or lower, such as a temperature between about -150 °C and about 0 °C or between about -80 °C and about -20 °C (e.g., about -5 °C, -10 °C, -15 °C, -20 °C, -25 °C, -30 °C, -40 °C, -50 °C, -60 °C, -70 °C, -80 °C, -90 °C, -130 °C or -150 °C). For example, the pharmaceutical composition comprising one or more amphiphilic polymers and one or more lipid nanoparticles is a solution or solid (e.g., via lyophilization) that is refrigerated for storage and/or shipment at, for example, about -20 °C, -30 °C, -40 °C, -50 °C, -60 °C, -70 °C, or -80 °C. In certain embodiments, the disclosure also relates to a method of increasing stability of the lipid nanoparticles by adding an effective amount of an amphiphilic polymer and by storing the lipid nanoparticles and/or pharmaceutical compositions thereof at a temperature of 4 °C or lower, such as a temperature between about -150 °C and about 0 °C or between about -80 °C and about -20 °C, e.g., about -5 °C, -10 °C, -15 °C, -20 °C, -25 °C, -30 °C, -40 °C, -50 °C, -60 °C, - 70 °C, -80 °C, -90 °C, -130 °C or -150 °C). The chemical properties of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure may be characterized by a variety of methods. In some embodiments, electrophoresis (e.g., capillary electrophoresis) or chromatography (e.g., reverse phase liquid chromatography) may be used to examine the mRNA integrity. The efficacy of the product is dependent on expression of the delivered RNA, which requires a sufficiently intact RNA molecule. RNA integrity is a measure of RNA quality that quantitates intact RNA. The method is also capable of detecting potential degradation products. RNA integrity is preferably determined by capillary gel electrophoresis. The initial specification is set to ensure sufficient RNA integrity in drug product preparations. In some embodiments, the RNA polynucleotide has an integrity of at least about 80%,85%, 90%, 92%, 94%, 95%, 96%, 97%, 98%, or 99%. In some embodiments, the RNA polynucleotide has an integrity of or greater than about 95%. In some embodiments, the RNA polynucleotide has an integrity of or greater than about 98%. In some embodiments, the RNA polynucleotide has an integrity of or greater than about 99%. In preferred embodiments, the RNA polynucleotide has a clinical grade purity. In some embodiments, the purity of the RNA polynucleotide is between about 60% and about 100%. In some embodiments, the purity of the RNA polynucleotide is between about 80% and 99%. In some embodiments, the purity of the RNA polynucleotide is between about 90% and about 99%. In some embodiments, wherein the purified mRNA has a clinical grade purity without further purification. In some embodiments, the clinical grade purity is achieved through a method including tangential flow filtration (TFF) purification. In some embodiments, the clinical grade purity is achieved without the further purification selected from high performance liquid chromatography (HPLC) purification, ligand or binding based purification, and/or ion exchange chromatography. In some embodiments, the method of producing the RNA polynucleotides removes long abortive RNA species, double-stranded RNA (dsRNA), residual plasmid DNA residual solvent and/or residual salt. In some embodiments, the short abortive transcript contaminants comprise less than 15 bases. In some embodiments, the short abortive transcript contaminants comprise about 8-12 bases. In some embodiments, the method of the invention also removes RNAse inhibitor. In some embodiments, the purified RNA polynucleotide comprises 5% or less, 4% or less, 3% or less, 2% or less, 1 % or less or is substantially free of protein contaminants as determined by capillary electrophoresis. In some embodiments, the purified RNA polynucleotide comprises less than 5%, less than 4%, less than 3%, less than 2%, less than 1 %, or is substantially free of salt contaminants determined by high performance liquid chromatography (HPLC). In some embodiments, the purified RNA polynucleotide comprises 5% or less, 4% or less, 3% or less, 2% or less, 1 % or less or is substantially free of short abortive transcript contaminants determined by known methods, such as, e.g., high performance liquid chromatography (HPLC). In some embodiments, the purified RNA polynucleotide has integrity of 60% or greater, 70% or greater, 80% or greater, 81% or greater, 82% or greater, 83% or greater, 84% or greater, 85% or greater, 86% or greater, 87% or greater, 88% or greater, 89% or greater, 90% or greater, 95% or greater, 96% or greater, 97% or greater, 98% or greater, or 99% or greater as determined by a known method, such as, e.g., capillary electrophoresis. Modified nucleobases Modified nucleobases which may be incorporated into modified nucleosides and nucleotides and be present in the RNA molecules include, for example, m5C (5- methylcytidine), m5U (5-methyluridine), m6A (N6-methyladenosine), s2U (2- thiouridine), Um (2'-0-methyluridine), mlA (1-methyladenosine); m2A (2- methyladenosine); Am (2-1-O-methyladenosine); ms2m6A (2- methylthio-N6- methyladenosine); i6A (N6-isopentenyladenosine); ms2i6A (2-methylthio- N6isopentenyladenosine); io6A (N6-(cis-hydroxyisopentenyl)adenosine); ms2io6A (2- methylthio-N6-(cis-hydroxyisopentenyl) adenosine); g6A (N6- glycinylcarbamoyladenosine); t6A (N6-threonyl carbamoyladenosine); ms2t6A (2- methylthio-N6-threonyl carbamoyladenosine); m6t6A (N6-methyl-N6- threonylcarbamoyladenosine); hn6A(N6-hydroxynorvalylcarbamoyl adenosine); ms2hn6A (2-methylthio-N6-hydroxynorvalyl carbamoyladenosine); Ar(p) (2'-0- ribosyladenosine (phosphate)); I (inosine); mil (1-methylinosine); m'lm (l,2'-0- dimethylinosine); m3C (3-methylcytidine); Cm (2T-0-methylcytidine); s2C (2- thiocytidine); ac4C (N4- acetylcytidine); £5C (5-fonnylcytidine); m5Cm (5,2-0- dimethylcytidine); ac4Cm (N4acetyl2TOmethylcytidine); k2C (lysidine); mlG (1- methylguanosine); m2G (N2- methylguanosine); m7G (7-methylguanosine); Gm (2'-0- methylguanosine); m22G (N2,N2- dimethylguanosine); m2Gm (N2,2'-0- dimethylguanosine); m22Gm (N2,N2,2'-0- trimethylguanosine); Gr(p) (2'-0- ribosylguanosine (phosphate)); yW (wybutosine); o2yW (peroxywybutosine); OHyW (hydroxywybutosine); OHyW* (undermodified hydroxywybutosine); imG (wyosine); mimG (methylguanosine); Q (queuosine); oQ (epoxyqueuosine); galQ (galtactosyl- queuosine); manQ (mannosyl-queuosine); preQo (7-cyano-7-deazaguanosine); preQi (7- aminomethyl-7-deazaguanosine); G* (archaeosine); D (dihydrouridine); m5Um (5,2'-0- dimethyluridine); s4U (4-thiouridine); m5s2U (5-methyl-2-thiouridine); s2Um (2-thio-2'- O- methyluridine); acp3U (3-(3-amino-3-carboxypropyl)uridine); ho5U (5- hydroxyuridine); mo5U (5- methoxyuridine); cmo5U (uridine 5-oxyacetic acid); mcmo5U (uridine 5-oxyacetic acid methyl ester); chm5U (5-(carboxyhydroxymethyl)uridine)); mchm5U (5-(carboxyhydroxymethyl)uridine methyl ester); mcm5U (5-methoxycarbonyl methyluridine); mcm5Um (S-methoxycarbonylmethyl- 2-O-methyluridine); mcm5s2U (5- methoxycarbonylmethyl-2-thiouridine); nm5s2U (5- aminomethyl-2-thiouridine); mnm5U (5-methylaminomethyluridine); mnm5s2U (5- methylaminomethyl-2-thiouridine); mnm5se2U (5-methylaminomethyl-2-selenouridine); ncm5U (5-carbamoylmethyl uridine); ncm5Um (5-carbamoylmethyl-2'-0-methyluridine); cmnm5U (5- carboxymethylaminomethyluridine); cnmm5Um (5-carboxymethy 1 aminomethyl-2-L- Omethyluridine); cmnm5s2U (5-carboxymethylaminomethyl-2-thiouridine); m62A (N6,N6- dimethyladenosine); Tm (2'-0-methylinosine); m4C (N4-methylcytidine); m4Cm (N4,2-0- dimethylcytidine); hm5C (5-hydroxymethylcytidine); m3U (3-methyluridine); cm5U (5- carboxymethyluridine); m6Am (N6,T-0-dimethyladenosine); rn62Am (N6,N6,0-2- trimethyladenosine); m2'7G (N2,7-dimethylguanosine); m2'2'7G (N2,N2,7- trimethylguanosine); m3Um (3,2T-0-dimethyluridine); m5D (5-methyldihydrouridine); f5Cm (5-formyl-2'-0- methylcytidine); mlGm (l,2'-0-dimethylguanosine); m'Am (1,2-0- dimethyl adenosine) irinomethyluridine); tm5s2U (S-taurinomethyl-2-thiouridine)); imG- 14 (4-demethyl guanosine); imG2 (isoguanosine); ac6A (N6-acetyladenosine), hypoxanthine, inosine, 8-oxo-adenine, 7- substituted derivatives thereof, dihydrouracil, pseudouracil, 2-thiouracil, 4-thiouracil, 5- aminouracil, 5-(Ci-C6)-alkyluracil, 5- methyluracil, 5-(C2-Ce)-alkenyluracil, 5-(C2-Ce)- alkynyluracil, 5-(hydroxymethyl)uracil, 5-chlorouracil, 5-fluorouracil, 5-bromouracil, 5- hydroxycytosine, 5-(Ci-C6 )- alkylcytosine, 5-methylcytosine, 5-(C2-C6)-alkenylcytosine, 5-(C2- C6)-alkynylcytosine, 5- chlorocytosine, 5-fluorocytosine, 5-bromocytosine, N2-dimethylguanine, 7-deazaguanine, 8-azaguanine, 7-deaza-7-substituted guanine, 7-deaza-7-(C2- C6)alkynylguanine, 7-deaza- 8-substituted guanine, 8-hydroxyguanine, 6-thioguanine, 8- oxoguanine, 2-aminopurine, 2-amino-6-chloropurine, 2,4-diaminopurine, 2,6-diaminopurine, 8- azapurine, substituted 7-deazapurine, 7-deaza-7-substituted purine, 7-deaza-8-substituted purine, hydrogen (abasic residue), m5C, m5U, m6A, s2U, W, or 2'-O-methyl-U. In some aspects, one or more of the modified nucleosides in the list may be excluded. Additional exemplary modified nucleotides include any one of N-1-methylpseudouridine; pseudouridine, N6-methyladenosine, 5-methylcytidine, and 5-methyluridine. In some embodiments, the modified nucleotide is N-1-methylpseudouridine. In some embodiments, the RNA molecule may include phosphoramidate, phosphorothioate, and/or methylphosphonate linkages. In some embodiments, the RNA molecule includes a modified nucleotide selected from any one of pseudouridine, N1-methylpseudouridine, N1-ethylpseudouridine, 2-thiouridine, 4′- thiouridine, 5-methylcytosine, 5-methyluridine, 2-thio-1-methyl-1-deaza-pseudouridine, 2-thio-1- methyl-pseudouridine, 2-thio-5-aza-uridine, 2-thio-dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4-methoxy-2-thio-pseudouridine, 4-methoxy-pseudouridine, 4-thio-1- methyl-pseudouridine, 4-thio-pseudouridine, 5-aza-uridine, dihydropseudouridine, 5- methoxyuridine and 2′-O-methyl uridine. In some embodiments, the modified or unnatural nucleotides are selected from the group consisting of pseudouridine, N1-methylpseudouridine, N1-ethylpseudouridine, 2-thiouridine, 4′-thiouridine, 5-methylcytosine, 5-methyluridine, 2-thio-1- methyl-1-deaza-pseudouridine, 2-thio-1-methyl-pseudouridine, 2-thio-5-aza-uridine, 2-thio- dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4-methoxy-2-thio- pseudouridine, 4-methoxy-pseudouridine, 4-thio-1-methyl-pseudouridine, 4-thio-pseudouridine, 5-aza-uridine, dihydropseudouridine, 5-methoxyuridine, and 2′-O-methyl uridine. In some embodiments, the modified or unnatural nucleotides are selected from the group consisting of 5- methyluridine, N1-methylpseudouridine, 5-methoxyuridine, and 5-methylcytosine. In some embodiments, at least 10% of a total population of a particular nucleotide in the saRNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 75% of a total population of a particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, essentially all of the particular nucleotide population in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least a portion, or all of a total population of a particular nucleotide in the saRNA molecule has been replaced with two modified or unnatural nucleotides. In some embodiments, the two modified or unnatural nucleotides are provided in a ratio equal to any one of, at least any one of, at most any one of, or between any two of 1:99 to 99:1, including 1:99; 2:98; 3:97; 4:96; 5:95; 6:94; 7:93; 8:92; 9:91; 10:90; 11:89; 12:88; 13:87; 14:86; 15:85; 16:84; 17:83; 18:82, 19:81; 20:80; 21:79; 22:78; 23:77; 24:76; 25:75; 26:74; 27:73; 28:72; 29:71; 30:70; 31:69; 32:68; 33:67; 34:66; 35:65; 36:64; 37:63; 38:62; 39:61; 40:60; 41:59; 42:58; 43:57; 44:56; 45:55; 46:54; 47:53; 48:52; 49:51; 50:50; 51:49; 52:48; 53:47; 54:46; 55:45; 56:44; 57:43; 58:42; 59:41; 60:40; 61:39; 62:38; 63:37; 64:36; 65:35; 66:34; 67:33; 68:32; 69:31; 70:30; 71:29; 72:28; 73:27; 74:26; 75:25; 76:24; 77:23; 78:22; 79:21; 80:20; 81:19; 82:18; 83:17; 84:16; 85:15; 86:14; 87:13; 88:12; 89:11; 90:10; 91:9; 92:8; 93:7; 94:6; 95:5; 96:4; 97:3; 98:2; and 99:1, or any range derivable therein. In some embodiments, at least 10% of a total population of a first particular nucleotide in a saRNA molecule as disclosed herein has been replaced with one or more modified or unnatural nucleotides, and at least 10% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 10% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 25% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 10% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 50% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 10% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 10% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 25% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 50% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 50% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 75% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 75% of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, essentially all of a total population of a first particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of uridine nucleotides in the saRNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with N1- methylpseudouridine. In some embodiments, at least 75% of a total population of uridine nucleotides in the molecule has been replaced with N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with N1- methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5-methoxyuridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with 5-methoxyuridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5-methyluridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with 5-methyluridine. In some embodiments, at least 50% of a total population of cytosine nucleotides in the molecule has been replaced with 5-methylcytosine. In some embodiments, essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 2-thiouridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with 2-thiouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with N1-methylpseudouridine and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5- methoxyuridine and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5-methyluridine and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with about 50% 5-methoxyuridine and about 50% N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with about 75% 5-methoxyuridine and about 25% N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with about 25% 5- methoxyuridine and about 75% N1-methylpseudouridine. UTRs The 5′ untranslated regions (UTR) is a regulatory region of DNA situated at the 5′ end of a protein coding sequence that is transcribed into mRNA but not translated into protein.5′ UTRs may contain various regulatory elements, e.g., 5′ cap structure, stem-loop structure, and an internal ribosome entry site (IRES), which may play a role in the control of translation initiation. The 3′ UTR, situated downstream of a protein coding sequence, may be involved in regulatory processes including transcript cleavage, stability and polyadenylation, translation, and mRNA localization. In some embodiments, the UTR is derived from an mRNA that is naturally abundant in a specific tissue (e.g., lymphoid tissue), to which the mRNA expression is targeted. In some embodiments, the UTR increases protein synthesis. Without being bound by mechanism or theory, the UTR may increase protein synthesis by increasing the time that the mRNA remains in translating polysomes (message stability) and/or the rate at which ribosomes initiate translation on the message (message translation efficiency). According, the UTR sequence may prolong protein synthesis in a tissue-specific manner. In some embodiments, the 5′ UTR and the 3′ UTR sequences are computationally derived. In some embodiments, the 5′ UTR and the 3′ UTRs are derived from a naturally abundant mRNA in a tissue. The tissue may be, for example, liver, a stem cell, or lymphoid tissue. The lymphoid tissue may include, for example, any one of a lymphocyte (e.g., a B-lymphocyte, a helper T-lymphocyte, a cytotoxic T-lymphocyte, a regulatory T- lymphocyte, or a natural killer cell), a macrophage, a monocyte, a dendritic cell, a neutrophil, an eosinophil and a reticulocyte. In some embodiments, the 5′ UTR and the 3′ UTR are derived from an alphavirus. In some embodiments, the 5′ UTR and the 3′ UTR are from a wild-type alphavirus. Examples of alphaviruses are described below. In some embodiments, the first RNA molecule includes a 5′ UTR and the 3′ UTR derived from a naturally abundant mRNA in a tissue. In some embodiments, the first RNA molecule includes a 5′ UTR and the 3′ UTR derived from an alphavirus. In some embodiments, the second RNA or the saRNA molecule includes a 5′ UTR and the 3′ UTR derived from an alphavirus. In some embodiments, the second RNA or the saRNA molecule includes a 5′ UTR and the 3′ UTR from a wild-type alphavirus. In some embodiments, the RNA molecule includes a 5’ cap. Open reading frame (ORF) The 5′ and 3′ UTRs may be operably linked to an ORF, which may be a sequence of codons that is capable of being translated into a polypeptide of interest. As stated above, the RNA molecule may include one (monocistronic), two (bicistronic) or more (multicistronic) open reading frames (ORFs). In some embodiments, the ORF encodes a non-structural viral gene. In some embodiments, the ORF further includes one or more subgenomic promoters. In some embodiments, the RNA molecule includes a subgenomic promoter operably linked to the ORF. In some embodiments, the subgenomic promoter comprises a cis-acting regulatory element. In some embodiments, the cis-acting regulatory element is immediately downstream (5’-3’) of B2. In some embodiments, the cis-acting regulatory element is immediately downstream (5’-3’) of a guanine that is immediately downstream of B2. In some embodiments, the cis-acting regulatory element is an AU-rich element. In some embodiments, the AU-rich element is au, auaaaagau, auaaaaagau, auag, auauauauau, auauauau, auauauauauau, augaugaugau, augau, auaaaagaua, or auaaaagaug. In some embodiments, the second RNA or the saRNA molecule may include (i) an ORF encoding a replicase which may transcribe RNA from the second RNA or the saRNA molecule and (ii) an ORF encoding at least one an antigen or polypeptide of interest. The polymerase may be an alphavirus replicase e.g., including any one of the non-structural alphavirus proteins nsP1, nsP2, nsP3 and nsP4, or a combination thereof. In some embodiments, the RNA molecule includes alphavirus nonstructural protein nsP1. In some embodiments, the RNA molecule includes alphavirus nonstructural protein nsP2. In some embodiments, the RNA molecule includes alphavirus nonstructural protein nsP3. In some embodiments, the RNA molecule includes alphavirus nonstructural protein nsP4. In some embodiments, the RNA molecule includes alphavirus nonstructural proteins nsP1, nsP2, and nsP3. In some embodiments, the RNA molecule includes alphavirus nonstructural proteins nsP1, nsP2, nsP3, and nsP4. In some embodiments, the RNA molecule includes any combination of nsP1, nsP2, nsP3, and nsP4. In some embodiments, the RNA molecule does not include nsP4. In some embodiments, an open reading frame of an RNA (e.g., saRNA) composition is codon-optimized. In some embodiments, the open reading frame which the influenza polypeptide or fragment thereof is encoded is codon-optimized. 5’ cap In some embodiments, the saRNA molecule described herein includes a 5’ cap. In some embodiments, the 5'-cap moiety is a natural 5'-cap. A “natural 5'-cap” is defined as a cap that includes 7-methylguanosine connected to the 5’ end of an mRNA molecule through a 5′ to 5′ triphosphate linkage. In some embodiments, the 5'-cap moiety is a 5'- cap analog. In some embodiments, the 5' end of the RNA is capped with a modified ribonucleotide with the structure m7G (5') ppp (5') N (cap 0 structure) or a derivative thereof, which may be incorporated during RNA synthesis (e.g., co-transcriptional capping) or may be enzymatically engineered after RNA transcription (e.g., post-transcriptional capping), wherein “N” is any ribonucleotide. In some embodiments, the 5’ end of the RNA molecule is capped with a modified ribonucleotide via an enzymatic reaction after RNA transcription. In some embodiments, capping is performed after purification, e.g., tangential flow filtration, of the RNA molecule. An exemplary enzymatic reaction for capping may include use of Vaccinia Virus Capping Enzyme (VCE) that includes mRNA triphosphatase, guanylyl- transferase, and guanine-7- methytransferase, which catalyzes the construction of N7-monomethylated cap 0 structures. Cap 0 structure can help maintaining the stability and translational efficacy of the RNA molecule. The 5' cap of the RNA molecule may be further modified by a 2 '-O-Methyltransferase which results in the generation of a cap 1 structure (m7Gppp [m2 '-Ο] N), which may further increase translation efficacy. In some embodiments, the RNA molecule may be enzymatically capped at the 5′ end using Vaccinia guanylyltransferase, guanosine triphosphate, and S-adenosyl-L-methionine to yield cap 0 structure. An inverted 7-methylguanosine cap is added via a 5′ to 5′ triphosphate bridge. Alternatively, use of a 2′O-methyltransferase with Vaccinia guanylyltransferase yields the cap 1 structure where in addition to the cap 0 structure, the 2′OH group is methylated on the penultimate nucleotide. S-adenosyl-L-methionine (SAM) is a cofactor utilized as a methyl transfer reagent. Non-limiting examples of 5′ cap structures are those which, among other things, have enhanced binding of cap binding polypeptides, increased half-life, reduced susceptibility to 5′ endonucleases and/or reduced 5′ decapping, as compared to synthetic 5′cap structures known in the art (or to a wild-type, natural or physiological 5′cap structure). For example, recombinant Vaccinia Virus Capping Enzyme and recombinant 2′-O-methyltransferase enzyme may create a canonical 5′-5′-triphosphate linkage between the 5′-terminal nucleotide of an mRNA and a guanine cap nucleotide wherein the cap guanine includes an N7 methylation and the 5′-terminal nucleotide of the mRNA includes a 2′-O-methyl. Such a structure is termed the Cap1 structure. This cap results in a higher translational-competency and cellular stability and a reduced activation of cellular pro-inflammatory cytokines, as compared, e.g., to other 5′cap analog structures known in the art. Cap structures include, but are not limited to, 7mG(5′)ppp(5′)N,pN2p (cap 0) and 7mG(5′)ppp(5′)N1mpNp (cap 1). Cap 0 is a N7-methyl guanosine connected to the 5′ nucleotide through a 5′ to 5′ triphosphate linkage, typically referred to as m7G cap or m7Gppp. In the cell, the cap 0 structure can help provide for efficient translation of the mRNA that carries the cap. An additional methylation on the 2′O position of the initiating nucleotide generates Cap 1, or refers to as m7GpppNm-, wherein Nm denotes any nucleotide with a 2′O methylation. In some embodiments, the 5′ terminal cap includes a cap analog, for example, a 5′ terminal cap may include a guanine analog. Exemplary guanine analogs include, but are not limited to, inosine, N1- methyl-guanosine, 2′fluoro-guanosine, 7-deaza-guanosine, 8-oxo-guanosine, 2-amino- guanosine, LNA-guanosine, and 2-azido-guanosine. In some embodiments, the capping region may include a single cap or a series of nucleotides forming the cap. In this embodiment the capping region may be equal to any one of, at least any one of, at most any one of, or between any two of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or at least 2, or 10 or fewer nucleotides in length. In some embodiments, the cap is absent. In some embodiments, the first and second operational regions may be equal to any one of, at least any one of, at most any one of, or between any two of 3 to 40, e.g., 5-30, 10-20, 15, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, or at least 4, or 30 or fewer nucleotides in length and may comprise, in addition to a Start and/or Stop codon, one or more signal and/or restriction sequences. In some embodiments, the 5’ Cap is represented by Formula I: where R1 and R2 are
Figure imgf000051_0001
independently guanine, adenine, or uracil. In some embodiments, B1 and B2 are naturally-occurring bases. In some embodiments, R1 is methyl and R2 is hydrogen. In some embodiments, B1 is guanine. In some embodiments, B1 is adenine. In some embodiments, B2 is adenine. In some embodiments, B2 is uracil. In some embodiments, B2 is uracil and at least 5% of a total population of uracil nucleotides in the molecule that are downstream of B2 have been replaced with one or more modified or unnatural nucleotides. In some embodiments, the nucleotide immediately downstream (5’ to 3’ direction) of the 5’ Cap comprises guanine. In some embodiments, B1 is adenine and B2 is uracil. In some embodiments, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen. In some instances, the saRNA does not comprise a 5’ Cap. In some instances, the 5’ Cap is not represented by Formula I. In some embodiments, the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen; this embodiment corresponds to CleanCap AU, and the inclusion of B2 = uracil, while optionally substuting uracil nucleotides downstream of B2, has been shown to improve saRNA functionality in some embodiments. In some embodiments, the RNA molecule further comprises: (1) an alphavirus 5' replication recognition sequence, and (2) an alphavirus 3' replication recognition sequence. In some embodiments, the RNA molecule encodes at least one antigen. In some embodiments, the RNA molecule comprises at least 7000 nucleotides. In some embodiments, the RNA molecule comprises at least 8000 nucleotides. In some embodiments, at least 80% of the total RNA molecules are full length. In some embodiments, the alphavirus is Venezuelan equine encephalitis virus. In some embodiments, the alphavirus is Semliki Forest virus. In some embodiments, the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with N1- methylpseudouridine, and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5- methoxyuridine, and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen, at least 50% of a total population of uridine nucleotides in the molecule has been replaced with 5- methyluridine, and essentially all cytosine nucleotides in the molecule have been replaced with 5-methylcytosine. In some embodiments, the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen, essentially all uridine nucleotides in the molecule have been replaced with about 50% 5-methoxyuridine and about 50% N1-methylpseudouridine. In some embodiments, the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen, essentially all uridine nucleotides in the molecule have been replaced with about 75% 5-methoxyuridine and about 25% N1-methylpseudouridine. In some embodiments, the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen, essentially all uridine nucleotides in the molecule have been replaced with about 25% 5-methoxyuridine and about 75% N1-methylpseudouridine. In some embodiments, a 5′ terminal cap is 7mG(5′)ppp(5′)NlmpNp. In some preferred In
Figure imgf000053_0001
Figure imgf000053_0002
. In alternative embodiments, the 5’ cap comprises CLEANCAP® AU for Self-Amplifying mRNA, CLEANCAP® Reagent AU for co-transcriptional capping of mRNA, m7G(5')ppp(5')(2'OMeA)
Figure imgf000053_0003
Poly-A tail As used herein, “poly A tail” refers to a stretch of consecutive adenine residues, which may be attached to the 3’ end of the RNA molecule. The poly-A tail may increase the half-life of the RNA molecule. Poly-A tails may play key regulatory roles in enhancing translation efficiency and regulating the efficiency of mRNA quality control and degradation. Short sequences or hyperpolyadenylation may signal for RNA degradation. Exemplary designs include a poly-A tails of about 40 adenine residues to about 80 adenine residues. In some embodiments, the RNA molecule further includes an endonuclease recognition site sequence immediately downstream of the poly A tail sequence. In some embodiments, such as for the second RNA or the saRNA molecule, the RNA molecule further includes a poly-A polymerase recognition sequence (e.g., AAUAAA) near its 3' end. A “full length” RNA molecule is one that includes a 5’-cap and a poly A tail. In some embodiments, the poly A tail includes 5-400 nucleotides in length. The poly A tail nucleotide length may be equal to any one of, at least any one of, at most any one of, or between any two of 5, 6, 7, 8, 9, 10, 15, 20, 25.30, 35, 40, 45, 50, 55, 60, 65, 70, 75, 80, 85, 90, 95, 100, 110, 120, 130, 140, 150, 160, 170, 180, 190, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290, 300, 310, 320, 330, 340, 350, 360, 370, 380, 390, and 400. In some embodiments, the RNA molecule includes a poly A tail that includes about 25 to about 400 adenosine nucleotides, a sequence of about 50 to about 400 adenosine nucleotides, a sequence of about 50 to about 300 adenosine nucleotides, a sequence of about 50 to about 250 adenosine nucleotides, a sequence of about 60 to about 250 adenosine nucleotides, or a sequence of about 40 to about 100 adenosine nucleotides. In some embodiments, the RNA molecule includes a poly A tail includes a sequence of greater than 30 adenosine nucleotides (“As”). In some embodiments, the RNA molecule includes a poly A tail that includes about 40 As. In some embodiments, the RNA molecule includes a poly A tail that includes about 80 As. As used herein, the term “about” refers to a deviation of ±10% of the value(s) to which it is attached. In some embodiments, the 3’ poly- A tail has a stretch of at least 10 consecutive adenosine residues and at most 300 consecutive adenosine residues. In some embodiments, the RNA molecule includes at least 20 consecutive adenosine residues and at most 40 consecutive adenosine residues. In some embodiments, the RNA molecule includes about 40 consecutive adenosine residues. In some embodiments, the RNA molecule includes about 80 consecutive adenosine residues. Composition In some instances, the compositions described herein include at least one saRNA as described herein. Some embodiments of the present disclosure provide influenza virus (influenza) vaccines (or compositions or immunogenic compositions) that include at least one saRNA polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide or an immunogenic fragment thereof (e.g., an immunogenic fragment capable of inducing an immune response to influenza). In some embodiments, equal to any one of, at least any one of, at most any one of, or between any two of 50%, 55%, 60%, 65%, 70%, 71%, 72%, 73%, 74%,75%, 76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% of the total RNA molecules (capped and uncapped) in the composition are capped. In some embodiments, equal to any one of, at least any one of, at most any one of, or between any two of 35%, 40%, 45%, 50%, 55%, 60%, 65%, 70%, 71%, 72%, 73%, 74%,75%, 76%, 77%, 78%, 79%, 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% of the total RNA molecules in the composition are full length RNA transcripts. Purity may be determined as described herein, e.g., via reverse phase HPLC or Bioanalyzer chip-based electrophoresis and measure by, e.g., peak area of full- length RNA molecule relative to total peak. In some embodiments, a fragment analyzer (FA) may be used to quantify and purify the RNA. The fragment analyzer automates capillary electrophoresis and HPLC. In some embodiments, the composition is substantially free of one or more impurities or contaminants including the linear DNA template and/or reverse complement transcription products and, for instance, includes RNA molecules that are equal to any one of, at least any one of, at most any one of, or between any two of 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% pure; at least 98% pure, or at least 99% pure. In some embodiments, the composition comprises an amount of the first RNA molecule that is greater than the amount of the second RNA molecule. In some embodiments, the composition comprises an amount of the first RNA molecule that is at least about 1 to 2 times greater than the amount of the second RNA molecule. In some embodiments, the composition comprises an amount of the first RNA molecule that is at least about 1 to 100 times greater than the amount of the second RNA molecule. In some embodiments, the composition further includes a pharmaceutically acceptable carrier. In some embodiments, the composition further includes a pharmaceutically acceptable vehicle. In some embodiments, the composition further includes a lipid-based delivery system, which delivers an RNA molecule to the interior of a cell, where it can then replicate and/or express the encoded polypeptide of interest. The delivery system may have adjuvant effects which enhance the immunogenicity of an encoded antigen. In some embodiments, the composition further includes neutral lipids, cationic lipids, cholesterol, and polyethylene glycol (PEG), and forms nanoparticles that encompass the RNA molecules. In some embodiments, the composition further includes any one of a cationic lipid, a liposome, a lipid nanoparticle, a polyplex, a cochleate, a virosome, an immune-stimulating complex, a microparticle, a microsphere, a nanosphere, a unilamellar vesicle, a multilamellar vesicle, an oil-in-water emulsion, a water-in-oil emulsion, an emulsome, a polycationic peptide, and a cationic nanoemulsion. In some embodiments, the RNA molecule is encapsulated in, bound to or adsorbed on any one of a cationic lipid, a liposome, a lipid nanoparticle, a polyplex, a cochleate, a virosome, an immune- stimulating complex, a microparticle, a microsphere, a nanosphere, a unilamellar vesicle, a multilamellar vesicle, an oil-in-water emulsion, a water-in-oil emulsion, an emulsome, a polycationic peptide, and a cationic nanoemulsion, or a combination thereof. In some instances, the compositions described herein include at least two RNA molecules: a first RNA molecule and a second RNA molecule as described herein. To protect against more than one strain of influenza, a combination vaccine composition may be administered that includes RNA encoding at least one antigenic polypeptide protein (or antigenic portion thereof) of a first influenza virus or organism and further includes a second RNA molecule encoding at least one antigenic polypeptide protein (or antigenic portion thereof) of a second influenza virus or organism. RNA can be co-formulated, for example, in a single lipid nanoparticle (LNP) or can be formulated in separate LNPs for co-administration. In some embodiments, the second RNA molecule includes any one of a 5’ cap, a 5’ UTR, an open reading frame, a 3’ UTR, and a poly A sequence, or any combination thereof. In some embodiments, the second RNA molecule includes a 5’ cap moiety. In some embodiments, the second RNA molecule includes a 5’ UTR and a 3’UTR. In some embodiments, the second RNA molecule includes a 5’UTR, an open reading frame, a 3’UTR, and does not further include a 5’ cap. In some embodiments, the second RNA molecule includes a 5’ cap moiety, 5’ UTR, coding region, 3’ UTR, and a 3’ poly A sequence. In some embodiments, the second RNA molecule includes a 5’ cap moiety, 5’ UTR, noncoding region, 3’ UTR, and a 3’ poly A sequence. In some embodiments, the second RNA molecule includes a noncoding region and does not further comprise any one of a 5’ cap moiety, 5’ UTR, 3’ UTR, and a 3’ poly A sequence. In some embodiments, the second RNA molecule includes a 5’ cap moiety, a 5’ untranslated region (5’ UTR), a modified nucleotide, an open reading frame, a 3’ untranslated region (3’ UTR), and a 3’ poly A sequence. Some aspects of the disclosure are directed to a composition comprising (i) first RNA molecule encoding a gene of interest derived from influenza; and (ii) a second RNA molecule comprising a modified or unnatural nucleotide In some instances, the first RNA molecule is any one of the saRNA molecules described herein. In some instances, the first RNA molecule comprises a 5’ Cap, a 5’ untranslated region, a coding region for a nonstructural protein comprising a RNA replicase, a subgenomic promoter, an open reading frame encoding a gene of interest, a 3’ untranslated region, and a 3’ poly A sequence. In some instances, at least 5% of a total population of a particular nucleotide in the first RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some instances, the RNA molecule comprises natural, unmodified nucleotides and does not include a modified or unnatural nucleotide. In some instances, the 5’ Cap is represented by Formula I, where R1 and R2 are each independently H or Me, B1 and B2 are each independently guanine, adenine, or uracil, a 5’ untranslated region, a coding region for a nonstructural protein derived from an alphavirus, a subgenomic promoter, such as one derived from an alphavirus, an open reading frame encoding a gene of interest, a 3’ untranslated region, and a 3’ poly A sequence. In some embodiments, B1 and B2 are naturally- occurring bases. In some embodiments, R1 is methyl and R2 is hydrogen. In some embodiments, B1 is guanine. In some embodiments, B1 is adenine. In some embodiments, B2 is adenine. In some embodiments, B2 is uracil. In some embodiments, the nucleotide immediately downstream (5’ to 3’ direction) of the 5’ Cap comprises guanine. In some embodiments, B1 is adenine and B2 is uracil. In some embodiments, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen. In some embodiments, the nucleotide immediately downstream (5’ to 3’) of the 5’ Cap comprises guanine, B1 is adenine, B2 is uracil, R1 is methyl, and R2 is hydrogen; this embodiment corresponds to CLEANCAP AU (Trilink), and the inclusion of B2 = uracil, while optionally substituting uracil nucleotides downstream of B2, which has been shown to provide increased saRNA functionality in some embodiments. In some embodiments, at least 10% of a total population of a particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 75% of a total population of a particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, essentially all of a particular nucleotide population in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, the one or more modified or unnatural replacement nucleotides comprise two modified or unnatural nucleotides provided in a ratio ranging from 1:99 to 99:1, or any derivable range therein. In some embodiments, at least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 10% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 25% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 50% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 10% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 25% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 50% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and at least 75% of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 50% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 75% of a total population of a first particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides, and essentially all of a total population of a second particular nucleotide in the first or second RNA molecule has been replaced with one or more modified or unnatural nucleotides. In some embodiments, at least 25% of a total population of uridine nucleotides in the first RNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the first RNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, at least 75% of a total population of uridine nucleotides in the first RNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the first RNA molecule has been replaced with 5-methoxyuridine. In some embodiments, essentially all uridine nucleotides in the molecule have been replaced with 5- methoxyuridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the first RNA molecule has been replaced with 5-methyluridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with 5- methyluridine. In some embodiments, at least 50% of a total population of cytosine nucleotides in the first RNA molecule has been replaced with 5-methylcytosine. In some embodiments, essentially all cytosine nucleotides in the first RNA molecule have been replaced with 5- methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the first RNA molecule has been replaced with 2-thiouridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with 2-thiouridine. In some embodiments, at least 25% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, at least 75% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1- methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with N1-methylpseudouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methoxyuridine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with 5-methoxyuridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methyluridine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with 5-methyluridine. In some embodiments, at least 50% of a total population of cytosine nucleotides in the second RNA molecule has been replaced with 5- methylcytosine. In some embodiments, essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 2- thiouridine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with 2-thiouridine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1-methylpseudouridine and essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methoxyuridine and essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine. In some embodiments, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methyluridine and essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with about 50% 5-methoxyuridine and about 50% N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with about 75% 5-methoxyuridine and about 25% N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the second RNA molecule have been replaced with about 25% 5-methoxyuridine and about 75% N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine and at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine and essentially all uridine nucleotides in the second RNA molecule have been replaced with N1-methylpseudouridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine and at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5-methoxyuridine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine, at least 50% of a total population of uridine nucleotides in the second RNA molecule has been replaced with 5- methyluridine, and essentially all cytosine nucleotides in the second RNA molecule have been replaced with 5-methylcytosine. In some embodiments, essentially all uridine nucleotides in the first RNA molecule have been replaced with N1-methylpseudouridine and essentially all uridine nucleotides in the second RNA molecule have been replaced with about 50% 5-methoxyuridine and about 50% N1-methylpseudouridine. Methods of use The RNA compositions may be utilized to treat and/or prevent an influenza virus of various genotypes, strains, and isolates. Some embodiments provide methods of preventing or treating influenza viral infection comprising administering to a subject any of the RNA compositions described herein. In some embodiments, the antigen specific immune response comprises a T cell response. In some embodiments, the antigen specific immune response comprises a B cell response. In some embodiments, the antigen specific immune response comprises both a T cell response and a B cell response. In some embodiments, the method of producing an antigen specific immune response involves a single administration of the RNA composition. In some embodiments, the RNA composition is administered to the subject by intradermal, intramuscular injection, subcutaneous injection, intranasal inoculation, or oral administration. In some embodiments, the nanoparticle has a net neutral charge at a neutral pH value. In some embodiments, the RNA (e.g., mRNA) vaccine is multivalent. In some embodiments, the RNA polynucleotides or portions thereof may encode one or more polypeptides or fragments thereof of an influenza strain as an antigen. Some aspects of the disclosure are directed to a method of inducing an immune response in a subject, comprising administering to the subject in need thereof an effective amount of a composition as disclosed herein. Some aspects of the disclosure are directed to a method of vaccinating a subject, comprising administering to the subject in need thereof an effective amount of a composition as disclosed herein. Some aspects of the disclosure are directed to a method comprising administering to the subject in need thereof an effective amount of a composition as disclosed herein. In some embodiments, a composition as disclosed herein elicits an immune response comprising an antibody response. In some embodiments, a composition as disclosed herein elicits an immune response comprising a T cell response. Nucleic Acids In certain embodiments, nucleic acid sequences can exist in a variety of instances such as: isolated segments and recombinant vectors of incorporated sequences or recombinant polynucleotides encoding polypeptides, such as antigens or one or both chains of an antibody, or a fragment, derivative, mutein, or variant thereof, polynucleotides sufficient for use as hybridization probes, PCR primers or sequencing primers for identifying, analyzing, mutating or amplifying a polynucleotide encoding a polypeptide, anti-sense nucleic acids for inhibiting expression of a polynucleotide, mRNA, saRNA, and complementary sequences of the foregoing described herein. Nucleic acids that encode an epitope to which antibodies may bind. Nucleic acids encoding fusion proteins that include these polypeptides are also provided. The nucleic acids can be single-stranded or double-stranded and can comprise RNA and/or DNA nucleotides and artificial variants thereof (e.g., peptide nucleic acids). The term “polynucleotide” refers to a nucleic acid molecule that can be recombinant or has been isolated from total genomic nucleic acid. Included within the term “polynucleotide” are oligonucleotides (nucleic acids 100 residues or less in length), recombinant vectors, including, for example, plasmids, cosmids, phage, viruses, and the like. Polynucleotides include, in certain aspects, regulatory sequences, isolated substantially away from their naturally occurring genes or protein encoding sequences. Polynucleotides may be single- stranded (coding or antisense) or double- stranded, and may be RNA, DNA (genomic, cDNA or synthetic), analogs thereof, or a combination thereof. Additional coding or non-coding sequences may, but need not, be present within a polynucleotide. In this respect, the term “gene” is used to refer to a nucleic acid that encodes a protein, polypeptide, or peptide (including any sequences required for proper transcription, post- translational modification, or localization). As will be understood by those in the art, this term encompasses genomic sequences, expression cassettes, cDNA sequences, and smaller engineered nucleic acid segments that express, or may be adapted to express, proteins, polypeptides, domains, peptides, fusion proteins, and mutants. A nucleic acid encoding all or part of a polypeptide may contain a contiguous nucleic acid sequence encoding all or a portion of such a polypeptide. It also is contemplated that a particular polypeptide may be encoded by nucleic acids containing variations having slightly different nucleic acid sequences but, nonetheless, encode the same or substantially similar polypeptide. In certain embodiments, there are polynucleotide variants having substantial identity to the sequences disclosed herein; those comprising equal to any one of, at least any one of, at most any one of, or between any two of 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity, compared to a polynucleotide sequence provided herein using the methods described herein (e.g., BLAST analysis using standard parameters). In certain aspects, the isolated polynucleotide will comprise a nucleotide sequence encoding a polypeptide that has at least 90% identity to an amino acid sequence described herein, over the entire length of the sequence; or a nucleotide sequence complementary to said isolated polynucleotide. In some embodiments, the isolated polynucleotide will comprise a nucleotide sequence encoding a polypeptide that has at least 95% identity to an amino acid sequence described herein, over the entire length of the sequence; or a nucleotide sequence complementary to said isolated polynucleotide. In some embodiments, the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 20. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 21. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 22. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 23. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 24. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 25. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 26. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 27. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 28. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 29. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 30. In some embodiments, the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 20; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 21; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 22; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 23; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 24; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 25; a polynucleotide sequence encoding a polypeptide selected from HA, NA, NP, M1, M2, NS1 and NS2; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 27; a polynucleotide sequence encoding a polypeptide selected from HA, NA, NP, M1, M2, NS1 and NS2; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 29; and a poly A tail comprising at least 20 consecutive adenines. In some embodiments, the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 20; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 21; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 22; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 23; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 24; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 25; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 26; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 27; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 28; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 21; and a poly A tail comprising at least 20 consecutive adenines. In some embodiments, the polynucleotide comprises a 5’ UTR sequence having SEQ ID NO: 20; a polynucleotide sequence having SEQ ID NO: 21; a polynucleotide sequence having SEQ ID NO: 22; a sequence having SEQ ID NO: 23; a polynucleotide sequence having SEQ ID NO: 24; a polynucleotide sequence having SEQ ID NO: 25; a polynucleotide sequence encoding a polypeptide selected from HA, NA, NP, M1, M2, NS1 and NS2; a polynucleotide sequence having SEQ ID NO: 27; a polynucleotide sequence encoding a polypeptide selected from HA, NA, NP, M1, M2, NS1 and NS2; a polynucleotide sequence having SEQ ID NO: 29; and a poly A tail comprising at least 20 consecutive adenines. In some embodiments, the polynucleotide comprises a 5’ UTR sequence having SEQ ID NO: 20; a polynucleotide sequence having SEQ ID NO: 21; a polynucleotide sequence having SEQ ID NO: 22; a sequence having SEQ ID NO: 23; a polynucleotide sequence having SEQ ID NO: 24; a polynucleotide sequence having SEQ ID NO: 25; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 26; a polynucleotide sequence having SEQ ID NO: 27; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 28; a polynucleotide sequence having SEQ ID NO: 29; and a poly A tail comprising at least 20 consecutive adenines. In some embodiments, the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 31. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 32. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 33. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 34. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 35. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 36. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 37. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 38. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 39. In some embodiments, the polynucleotide comprises a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 40. In some embodiments, the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 31; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 32; a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 33; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 34; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 35; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 36; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 37; a polynucleotide sequence encoding a polypeptide selected from HA, NA, NP, M1, M2, NS1 and NS2; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 38; and a poly A tail comprising at least 20 consecutive adenines. In some embodiments, the polynucleotide comprises a 5’ UTR sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 31; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 32; a sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 33; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 34; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 35; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 36; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 37; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 38; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 39; and a poly A tail comprising at least 20 consecutive adenines. In some embodiments, the polynucleotide comprises a 5’ UTR sequence SEQ ID NO: SEQ ID NO: 31; a polynucleotide sequence having SEQ ID NO: 32; a polynucleotide sequence having SEQ ID NO: 33; a polynucleotide sequence having SEQ ID NO: 34; a polynucleotide sequence having SEQ ID NO: 35; a polynucleotide sequence having SEQ ID NO: 36; a polynucleotide sequence having SEQ ID NO: 37; a polynucleotide sequence encoding a polypeptide selected from HA, NA, NP, M1, M2, NS1 and NS2; a polynucleotide sequence having SEQ ID NO: 39; and a poly A tail comprising at least 20 consecutive adenines. In some embodiments, the polynucleotide comprises a 5’ UTR sequence SEQ ID NO: SEQ ID NO: 31; a polynucleotide sequence having SEQ ID NO: 32; a polynucleotide sequence having SEQ ID NO: 33; a polynucleotide sequence having SEQ ID NO: 34; a polynucleotide sequence having SEQ ID NO: 35; a polynucleotide sequence having SEQ ID NO: 36; a polynucleotide sequence having SEQ ID NO: 37; a polynucleotide sequence having at least 70%, 75%, 80%, 85%, 90%, 95%, 96%, 97%, 98%, or 99% or higher sequence identity to SEQ ID NO: 38; a polynucleotide sequence having SEQ ID NO: 39; and a poly A tail comprising at least 20 consecutive adenines. The nucleic acid segments, regardless of the length of the coding sequence itself, may be combined with other nucleic acid sequences, such as promoters, polyadenylation signals, additional restriction enzyme sites, multiple cloning sites, other coding segments, and the like, such that their overall length may vary considerably. The nucleic acids can be any length. They can be, for example, equal to any one of, at least any one of, at most any one of, or between any two of 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 75, 100, 125, 175, 200, 250, 300, 350, 400, 450, 500, 750, 1000, 1500, 3000, 5000, 6000, 7000, 8000, 9000, 10000, 11000, 12000, 13000, 14000, 15000 or more nucleotides in length, and/or can comprise one or more additional sequences, for example, regulatory sequences, and/or be a part of a larger nucleic acid, for example, a vector. It is therefore contemplated that a nucleic acid fragment of almost any length may be employed, with the total length being limited by the ease of preparation and use in the intended recombinant nucleic acid protocol. In some cases, a nucleic acid sequence may encode a polypeptide sequence with additional heterologous coding sequences, for example to allow for purification of the polypeptide, transport, secretion, post-translational modification, or for therapeutic benefits such as targeting or efficacy. As discussed above, a tag or other heterologous polypeptide may be added to the modified polypeptide-encoding sequence, wherein “heterologous” refers to a polypeptide that is not the same as the modified polypeptide. Lipid delivery In some embodiments, the saRNA composition comprises lipids. The lipids and saRNA may together form nanoparticles. In some embodiments, the LNP integrity of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is about 20% or higher, about 25% or higher, about 30% or higher, about 35% or higher, about 40% or higher, about 45% or higher, about 50% or higher, about 55% or higher, about 60% or higher, about 65% or higher, about 70% or higher, about 75% or higher, about 80% or higher, about 85% or higher, about 90% or higher, about 95% or higher, about 96% or higher, about 97% or higher, about 98% or higher, or about 99% or higher. In some embodiments, the LNP integrity of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is higher than the LNP integrity of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation produced by a comparable method by about 5% or higher, about 10% or more, about 15% or more, about 20% or more, about 30% or more, about 40% or more, about 50% or more, about 60% or more, about 70% or more, about 80% or more, about 90% or more, about 1 folds or more, about 2 folds or more, about 3 folds or more, about 4 folds or more, about 5 folds or more, about 10 folds or more, about 20 folds or more, about 30 folds or more, about 40 folds or more, about 50 folds or more, about 100 folds or more, about 200 folds or more, about 300 folds or more, about 400 folds or more, about 500 folds or more, about 1000 folds or more, about 2000 folds or more, about 3000 folds or more, about 4000 folds or more, about 5000 folds or more, or about 10000 folds or more. In some embodiments, the Txo% of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is about 12 months or longer, about 15 months or longer, about 18 months or longer, about 21 months or longer, about 24 months or longer, about 27 months or longer, about 30 months or longer, about 33 months or longer, about 36 months or longer, about 48 months or longer, about 60 months or longer, about 72 months or longer, about 84 months or longer, about 96 months or longer, about 108 months or longer, about 120 months or longer. In some embodiments, the Txo% of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is longer than the Txo% of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation produced by a comparable method by about 5% or higher, about 10% or more, about 15% or more, about 20% or more, about 30% or more, about 40% or more, about 50% or more, about 60% or more, about 70% or more, about 80% or more, about 90% or more, about 1 folds or more, about 2 folds or more, about 3 folds or more, about 4 folds or more, about 5 folds or more. In some embodiments, the T1/2 of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is about 12 months or longer, about 15 months or longer, about 18 months or longer, about 21 months or longer, about 24 months or longer, about 27 months or longer, about 30 months or longer, about 33 months or longer, about 36 months or longer, about 48 months or longer, about 60 months or longer, about 72 months or longer, about 84 months or longer, about 96 months or longer, about 108 months or longer, about 120 months or longer. In some embodiments, the T1/2 of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation of the present disclosure is longer than the T1/2 of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation produced by a comparable method by about 5% or higher, about 10% or more, about 15% or more, about 20% or more, about 30% or more, about 40% or more, about 50% or more, about 60% or more, about 70% or more, about 80% or more, about 90% or more, about 1 folds or more, about 2 folds or more, about 3 folds or more, about 4 folds or more, about 5 folds or more As used herein,“Tx” refers to the amount of time lasted for the nucleic acid integrity (e.g., mRNA integrity) of a LNP, LNP suspension, lyophilized LNP composition, or LNP formulation to degrade to about X of the initial integrity of the nucleic acid (e.g., mRNA) used for the preparation of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation. For example,“T8o%” refers to the amount of time lasted for the nucleic acid integrity (e.g., mRNA integrity) of a LNP, LNP suspension, lyophilized LNP composition, or LNP formulation to degrade to about 80% of the initial integrity of the nucleic acid (e.g., mRNA) used for the preparation of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation. For another example,“T1/2” refers to the amount of time lasted for the nucleic acid integrity (e.g., mRNA integrity) of a LNP, LNP suspension, lyophilized LNP composition, or LNP formulation to degrade to about 1/2 of the initial integrity of the nucleic acid (e.g., mRNA) used for the preparation of the LNP, LNP suspension, lyophilized LNP composition, or LNP formulation. Lipid nanoparticles may include a lipid component and one or more additional components, such as a therapeutic and/or prophylactic, such as a nucleic acid. A LNP may be designed for one or more specific applications or targets. The elements of a LNP may be selected based on a particular application or target, and/or based on the efficacy, toxicity, expense, ease of use, availability, or other feature of one or more elements. Similarly, the particular formulation of a LNP may be selected for a particular application or target according to, for example, the efficacy and toxicity of particular combination of elements. The efficacy and tolerability of a LNP formulation may be affected by the stability of the formulation. The lipid component of a LNP may include, for example, a cationic lipid, a phospholipid (such as an unsaturated lipid, e.g., DOPE or DSPC), a PEG lipid, and a structural lipid. The elements of the lipid component may be provided in specific fractions. In some embodiments, the LNP further comprises a phospholipid, a PEG lipid, a structural lipid, or any combination thereof. Suitable phospholipids, PEG lipids, and structural lipids for the methods of the present disclosure are further disclosed herein. In some embodiments, the lipid component of a LNP includes a cationic lipid, a phospholipid, a PEG lipid, and a structural lipid. In certain embodiments, the lipid component of the lipid nanoparticle includes about 30 mol % to about 60 mol % cationic lipid, about 0 mol % to about 30 mol % phospholipid, about 18.5 mol % to about 48.5 mol % structural lipid, and about 0 mol % to about 10 mol % of PEG lipid, provided that the total mol % does not exceed 100%. In some embodiments, the lipid component of the lipid nanoparticle includes about 35 mol % to about 55 mol % compound of cationic lipid, about 5 mol % to about 25 mol % phospholipid, about 30 mol % to about 40 mol % structural lipid, and about 0 mol % to about 10 mol % of PEG lipid. In a particular embodiment, the lipid component includes about 50 mol % said cationic lipid, about 10 mol % phospholipid, about 38.5 mol % structural lipid, and about 1.5 mol % of PEG lipid. In another embodiment, the lipid component includes about 40 mol % said cationic lipid, about 20 mol % phospholipid, about 38.5 mol % structural lipid, and about 1.5 mol % of PEG lipid. In some embodiments, the phospholipid may be DOPE or DSPC. In other embodiments, the PEG lipid may be PEG-DMG and/or the structural lipid may be cholesterol. The amount of a therapeutic and/or prophylactic in a LNP may depend on the size, composition, desired target and/or application, or other properties of the lipid nanoparticle as well as on the properties of the therapeutic and/or prophylactic. For example, the amount of an RNA useful in a LNP may depend on the size, sequence, and other characteristics of the RNA. The relative amounts of a therapeutic and/or prophylactic (i.e. pharmaceutical substance) and other elements (e.g., lipids) in a LNP may also vary. In some embodiments, the wt/wt ratio of the lipid component to a therapeutic and/or prophylactic in a LNP may be from about 5: 1 to about 60: 1, such as 5: 1, 6: 1, 7:1,8:1,9:1, 10:1, 11:1, 12:1, 13:1, 14:1, 15:1, 16:1, 17:1, 18:1, 19:1, 20:1, 25:1,30:1,35:1, 40: 1, 45: 1, 50: 1, and 60: 1. For example, the wt/wt ratio of the lipid component to a therapeutic and/or prophylactic may be from about 10: 1 to about 40: 1. In certain embodiments, the wt/wt ratio is about 20: 1. The amount of a therapeutic and/or prophylactic in a LNP may, for example, be measured using absorption spectroscopy (e.g., ultraviolet-visible spectroscopy). In some embodiments, the ionizable lipid is a compound of Formula (I): or isomers thereof, wherein:
Figure imgf000069_0001
consisting of C5-30 alkyl, C5-20 alkenyl, -R*YR”, -YR”, and - R”M’R’; R2 and R3 are independently selected from the group consisting of H, C1-14 alkyl, C2- 14 alkenyl, -R*YR”, -YR”, and -R*OR”, or R2 and R3, together with the atom to which they are attached, form a heterocycle or carbocycle; R4 is selected from the group consisting of hydrogen, a C3-6 carbocycle, -(CH2)nQ, - (CH2)nCHQR, -CHQR, -CQ(R)2, and unsubstituted C1-6 alkyl, where Q is selected from a carbocycle, heterocycle, -OR, -0(CH2)nN(R)2, -C(0)0R, - 0C(0)R, -CX3, -CX2H, -CXH2, -CN, -N(R)2, -C(0)N(R)2, -N(R)C(0)R, -N(R)S(0)2R, - N(R)C(0)N(R)2, -N(R)C(S)N(R)2, -N(R)Re, N(R)S(0)2R8, -0(CH2)nOR, -N(R)C(=NR9)N(R)2, - N(R)C(=CHR9)N(R)2, -0C(0)N(R)2J -N(R)C(0)0R, -N(0R)C(0)R, -N(0R)S(0)2R, -N(0R)C(0)0R, -N(0R)C(0)N(R)2, -N(OR)C(S)N(R)2, -N(OR)C(=NR9)N(R)2, -N(OR)C(=CHR9)N(R)2, - C(=NR9)N(R)2, - C(=NR9)R, -C(0)N(R)0R, and -C(R)N(R)2C(0)0R, and each n is independently selected from 1, 2, 3, 4, and 5; each R5 is independently selected from the group consisting of C1-3 alkyl, C2-3 alkenyl, and H; each Re is independently selected from the group consisting of C1-3 alkyl, C2-3 alkenyl, and H; M and M’ are independently selected from -C(0)0- , -OC(O)-, -0C(0)-M”-C(0)0-, -C(0)N(R’)-, -N(R’)C(0)-, -C(O)-, -C(S)-, -C(S)S-, -SC(S)-, - CH(OH)-, -P(0)(0R’)0-, -S(0)2-, -S-S-, an aryl group, and a heteroaryl group, in which M” is a bond, C1-13 alkyl or C2-13 alkenyl; R7 is selected from the group consisting of C1-3 alkyl, C2-3 alkenyl, and H; Re is selected from the group consisting of C3-6 carbocycle and heterocycle; R9 is selected from the group consisting of H, CN, NO2, Ci-6 alkyl, -OR, -S(0)2R, -S(0)2N(R)2, C2- 6 alkenyl, C3-6 carbocycle and heterocycle; each R is independently selected from the group consisting of C1-3 alkyl, C2-3 alkenyl, and H; each R’ is independently selected from the group consisting of Ci-is alkyl, C2-is alkenyl, -R*YR”, -YR”, and H; each R” is independently selected from the group consisting of C3-15 alkyl and C3-15 alkenyl; each R* is independently selected from the group consisting of Ci-i2 alkyl and C2-i2 alkenyl; each Y is independently a C3-6 carbocycle; each X is independently selected from the group consisting of F, Cl, Br, and I; and m is selected from 5, 6, 7, 8, 9, 10, 11, 12, and 13; and wherein when R4 is -(CH2)nQ, - (CH2)nCHQR, -CHQR, or -CQ(R)2, then (i) Q is not -N(R)2 when n is 1, 2, 3, 4 or 5, or (ii) Q is not 5, 6, or 7-membered heterocycloalkyl when n is 1 or 2. In some embodiments, the ionizable lipid is SM-102. In some embodiments, the ionizable lipid is ALC-0315. In some embodiments, the ionizable lipid is:
Figure imgf000070_0001
. In some embodiments, the compounds have the following structure (I):
Figure imgf000070_0002
salt, tautomer, prodrug or stereoisomer thereof, wherein: one of L1 or L2 is —O(C═O)—, —(C═O)O—, —C(═O)—, —O—, —S(O)x—, —S—S—, — C(═O)S—, SC(═O)—, —NRaC(═O)—, —C(═O)NRa—, NRaC(═O)NRa—, —OC(═O)NRa— or —NRaC(═O)O—, and the other of L1 or L2 is —O(C═O)—, —(C═O)O—, —C(═O)—, —O—, —S(O)x—, —S—S—, —C(═O)S—, SC(═O)—, —NRaC(═O)—, —C(═O)NRa—, NRaC(═O)NRa—, —OC(═O)NRa— or —NRaC(═O)O— or a direct bond; G1 and G2 are each independently unsubstituted C1-C12 alkylene or C1-C12 alkenylene; G3 is C1-C24 alkylene, C1-C24 alkenylene, C3-C8 cycloalkylene, C3-C8 cycloalkenylene; Ra is H or C1-C12 alkyl; R1 and R2 are each independently C6-C24 alkyl or C6-C24 alkenyl; R3 is H, OR5, CN, — C(═O)OR4, —OC(═O)R4 or —NR5C(═O)R4; R4 is C1-C12 alkyl; R5 is H or C1-C6 alkyl; and x is 0, 1 or 2. In a preferred embodiment, the ionizable lipid is:
The lipid component of a lipid nanoparticle composition may include one or more molecules comprising polyethylene glycol, such as PEG or PEG-modified lipids. Such species may be alternately referred to as PEGylated lipids. A PEG lipid is a lipid modified with polyethylene glycol. A PEG lipid may be selected from the non-limiting group including PEG- modified phosphatidylethanolamines, PEG-modified phosphatidic acids, PEG-modified ceramides, PEG-modified dialkylamines, PEG-modified diacylglycerols, PEG-modified dialkylglycerols, and mixtures thereof. In some embodiments, a PEG lipid may be PEG-c- DOMG, PEG-DMG, PEG-DLPE, PEG-DMPE, PEG-DPPC, or a PEG-DSPE lipid. As used herein, the term “PEG lipid” refers to polyethylene glycol (PEG) -modified lipids. Non-limiting examples of PEG lipids include PEG-modified phosphatidylethanolamine and phosphatidic acid, PEG-ceramide conjugates (e.g., PEG-CerCl4 or PEG-CerC20), PEG- modified dialkylamines and PEG-modified l,2-diacyloxypropan-3 -amines. Such lipids are also referred to as PEGylated lipids. In some embodiments, a PEG lipid can be PEG-c-DOMG, PEG- DMG, PEG-DLPE, PEG- DMPE, PEG-DPPC, or a PEG-DSPE lipid. In some embodiments, the PEG-modified lipids are a modified form of PEG DMG. In some embodiments, the PEG-modified lipid is PEG lipid with the formula (IV):
Figure imgf000071_0001
alkyl chain containing from 10 to 30 carbon atoms, wherein the alkyl chain is optionally interrupted by one or more ester bonds; and w has a mean value ranging from 30 to 60. Formulation In one aspect, the disclosure relates to an immunogenic composition including: (i) a first ribonucleic acid (RNA) polynucleotide having an open reading frame encoding a first antigen, said antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, and (ii) a second RNA polynucleotide having an open reading frame encoding a second antigen, said second antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the first and second RNA polynucleotides are formulated in a lipid nanoparticle (LNP). In some embodiments, the first and second antigens include hemagglutinin (HA), or an immunogenic fragment or variant thereof. In some embodiments, the first antigen includes an HA from a different subtype of influenza virus to the influenza virus antigenic polypeptide or an immunogenic fragment thereof of the second antigen. In some embodiments, the composition further includes (iii) a third antigen including at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the third antigen is from influenza virus but is from a different strain of influenza virus to both the first and second antigens. In some embodiments, the first, second and third RNA polynucleotides are formulated in a lipid nanoparticle. In some embodiments, the composition comprises an octavalent influenza vaccine comprises RNA encoding an antigenic polypeptide associated with two type A viruses and two type B viruses that are predicted to be prevalent in a relevant jurisdiction. In some embodiments, an octavalent influenza vaccine comprises RNA encoding an antigenic polypeptide derived from HA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type B virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type B virus, RNA encoding an antigenic polypeptide derived from one antigenic polypeptide selected from NA, NP, M1, M2, NS1 and NS2 from an influenza type A virus, RNA encoding an antigenic polypeptide derived from one antigenic polypeptide selected from NA, NP, M1, M2, NS1 and NS2 from an influenza type A virus, RNA encoding an antigenic polypeptide derived from one antigenic polypeptide selected from NA, NP, M1, M2, NS1 and NS2 from an influenza type B virus, and RNA encoding an antigenic polypeptide derived from one antigenic polypeptide selected from NA, NP, M1, M2, NS1 and NS2 from an influenza type B virus. In some embodiments, an octavalent influenza vaccine comprises RNA encoding an antigenic polypeptide derived from HA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type B virus, RNA encoding an antigenic polypeptide derived from HA from an influenza type B virus, RNA encoding an antigenic polypeptide derived from NA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from NA from an influenza type A virus, RNA encoding an antigenic polypeptide derived from NA from an influenza type B virus, and RNA encoding an antigenic polypeptide derived from NA from an influenza type B virus. In some embodiments, an octavalent influenza vaccine comprises RNA encoding an antigenic polypeptide associated with an H1N1 influenza virus, RNA encoding an antigenic polypeptide associated with an H3N2 influenza virus, RNA encoding an antigenic polypeptide associated with a Victoria lineage influenza virus, and RNA encoding an antigenic polypeptide associated with a Yamagata lineage influenza virus. In some embodiments, an octavalent influenza vaccine comprises RNA associated with influenza types that are predicted to be prevalent in a relevant jurisdiction (e.g., HA polypeptides associated with the H1N1, H3N2, B/Victoria, and B/Yamagata influenza viruses that are predicted to be prevalent in a relevant geography). The RNA (e.g., mRNA) vaccines may be utilized in various settings depending on the prevalence of the infection or the degree or level of unmet medical need. The RNA vaccines may be utilized to treat and/or prevent an influenza virus of various genotypes, strains, and isolates. The RNA vaccines typically have superior properties in that they produce much larger antibody titers and produce responses earlier than commercially available anti-viral therapeutic treatments. While not wishing to be bound by theory, it is believed that the RNA vaccines, as mRNA polynucleotides, are better designed to produce the appropriate protein conformation upon translation as the RNA vaccines co-opt natural cellular machinery. Unlike traditional vaccines, which are manufactured ex vivo and may trigger unwanted cellular responses, RNA (e.g., mRNA) vaccines are presented to the cellular system in a more native fashion. In one aspect, a method of purifying an RNA polynucleotide synthesized by in vitro transcription is provided. The method includes ultrafiltration and diafiltration. In some embodiments, the method does not comprise a chromatography step. In some embodiments, the purified RNA polynucleotide is substantially free of contaminants comprising short abortive RNA species, long abortive RNA species, double- stranded RNA (dsRNA), residual plasmid DNA, residual in vitro transcription enzymes, residual solvent and/or residual salt. In some embodiments, the residual plasmid DNA is ≤ 500 ng DNA/mg RNA. In some embodiments, purity of the purified mRNA is between about 60% and about 100%. In another aspect, a method of producing an RNA polynucleotide-encapsulated LNP is provided. The method includes buffer exchanging the LNPs. The method further includes concentrating the LNPs via flat sheet cassette membranes. In preferred embodiments, the UFDF process does not utilize hollow fiber membranes. There may be situations in which persons are at risk for infection with more than one strain of influenza virus. RNA (e.g., mRNA) therapeutic vaccines are particularly amenable to combination vaccination approaches due to a number of factors including, but not limited to, speed of manufacture, ability to rapidly tailor vaccines to accommodate perceived geographical threat, and the like. Moreover, because the vaccines utilize the human body to produce the antigenic protein, the vaccines are amenable to the production of larger, more complex antigenic proteins, allowing for proper folding, surface expression, antigen presentation, etc. in the human subject. To protect against more than one strain of influenza, a combination vaccine can be administered that includes RNA (e.g., mRNA) encoding at least one antigenic polypeptide protein (or antigenic portion thereof) of a first influenza virus or organism and further includes RNA encoding at least one antigenic polypeptide protein (or antigenic portion thereof) of a second influenza virus or organism. RNA (e.g., mRNA) can be co-formulated, for example, in a single lipid nanoparticle (LNP) or can be formulated in separate LNPs for co-administration. Some embodiments of the present disclosure provide influenza virus (influenza) vaccines (or compositions or immunogenic compositions) that include at least one RNA polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide or an immunogenic fragment thereof (e.g., an immunogenic fragment capable of inducing an immune response to influenza). In some embodiments, the at least one antigenic polypeptide is one of the defined antigenic subdomains of HA, termed HA1, HA2, or a combination of HA1 and HA2, and at least one antigenic polypeptide selected from neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non-structural protein 2 (NS2). In some embodiments, the at least one antigenic polypeptide is HA or derivatives thereof comprising antigenic sequences from HA1 and/or HA2, and at least one antigenic polypeptide selected from NA, NP, M1, M2, NS1 and NS2. In some embodiments, the at least one antigenic polypeptide is HA or derivatives thereof comprising antigenic sequences from HA1 and/or HA2 and at least two antigenic polypeptides selected from NA, NP, M1, M2, NS1 and NS2. In some embodiments, a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding an influenza virus protein, or an immunogenic fragment thereof. In some embodiments, a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding multiple influenza virus proteins, or immunogenic fragments thereof. In some embodiments, a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one HA1, HA2, or a combination of both). In some embodiments, a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one HA1, HA2, or a combination of both, of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least one other RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a protein selected from a HA protein, NP protein, a NA protein, a M1 protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus. In some embodiments, a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least two other RNAs (e.g., mRNAs) polynucleotides having two open reading frames encoding two proteins selected from a HA protein, NP protein, a NA protein, a M1 protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus. In some embodiments, a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least three other RNAs (e.g., mRNAs) polynucleotides having three open reading frames encoding three proteins selected from a HA protein, NP protein, a NA protein, a M protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus. In some embodiments, a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least four other RNAs (e.g., mRNAs) polynucleotides having four open reading frames encoding four proteins selected from a HA protein, NP protein, a NA protein, a M1 protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus. In some embodiments, a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein, or an immunogenic fragment thereof (e.g., at least one of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18) and at least five other RNAs (e.g., mRNAs) polynucleotides having five open reading frames encoding five proteins selected from a HA protein, NP protein, a NA protein, a M1 protein, a M2 protein, a NS1 protein and a NS2 protein obtained from influenza virus. In some embodiments, a vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding a HA protein or an immunogenic fragment thereof (e.g., at least one of any one of or a combination of any or all of H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and/or H18), a HA protein, a NP protein or an immunogenic fragment thereof, a NA protein or an immunogenic fragment thereof, a M1 protein or an immunogenic fragment thereof, a M2 protein or an immunogenic fragment thereof, a NS1 protein or an immunogenic fragment thereof and a NS2 protein or an immunogenic fragment thereof obtained from influenza virus. In some embodiments, an influenza RNA composition includes an saRNA encoding an antigenic fusion protein. Thus, the encoded antigen or antigens may include two or more proteins (e.g., protein and/or protein fragment) joined together. Alternatively, the protein to which a protein antigen is fused does not promote a strong immune response to itself, but rather to the influenza antigen. Antigenic fusion proteins, in some embodiments, retain the functional property from each original protein. Some embodiments of the present disclosure provide the following novel influenza virus polypeptide sequences: H1HA10-Foldon_ΔNgly1; H1HA10TM-PR8 (H1 A/Puerto Rico/8/34 HA); H1HA10-PR8-DS (H1 A/Puerto Rico/8/34 HA; pH1HA10-Cal04-DS (H1 A/California/04/2009 HA); Pandemic H1HA10 from California 04; pH1HA10-ferritin; HA10; Pandemic H1HA10 from California 04; Pandemic H1HA10 from California 04 strain/without foldon and with K68C/R76C mutation for trimerization; H1HA10 from A/Puerto Rico/8/34 strain, without foldon and with Y94D/N95L mutation for trimerization; H1HA10 from A/Puerto Rico/8/34 strain, without foldon and with K68C/R76C mutation for trimerization; H1N1 A/Viet Nam/850/2009; H3N2 A/Wisconsin/67/2005; H7N9 (A/Anhui/1/2013); H9N2 A/Hong Kong/1073/99; H10N8 A/JX346/2013. Some embodiments of the present disclosure provide influenza virus (influenza) vaccines that include at least one RNA polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide or an immunogenic fragment of the novel influenza virus polypeptide sequences described above (e.g., an immunogenic fragment capable of inducing an immune response to influenza). In some embodiments, an influenza vaccine comprises at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide comprising a modified sequence that is at least 75% (e.g., any number between 75% and 100%, inclusive, e.g., 70%, 80%, 85%, 90%, 95%, 99%, and 100%) identity to an amino acid sequence of the novel influenza virus sequences described above. The modified sequence can be at least 75% (e.g., any number between 75% and 100%, inclusive, e.g., 70%, 80%, 85%, 90%, 95%, 99%, and 100%) identical to an amino acid sequence of the novel influenza virus sequences described above. Some embodiments of the present disclosure provide an isolated nucleic acid comprising a sequence encoding the novel influenza virus polypeptide sequences described above; an expression vector comprising the nucleic acid; and a host cell comprising the nucleic acid. The present disclosure also provides a method of producing a polypeptide of any of the novel influenza virus sequences described above. A method may include culturing the host cell in a medium under conditions permitting nucleic acid expression of the novel influenza virus sequences described above, and purifying from the cultured cell or the medium of the cell a novel influenza virus polypeptide. The present disclosure also provides antibody molecules, including full length antibodies and antibody derivatives, directed against the novel influenza virus sequences. In some embodiments, an open reading frame of a RNA (e.g., mRNA) vaccine is codon- optimized. In some embodiments, the open reading frame which the influenza polypeptide or fragment thereof is encoded is codon-optimized. Some embodiments provide use of an influenza vaccine that includes at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide or an immunogenic fragment thereof, wherein at least 80% (e.g., 85%, 90%, 95%, 98%, 99%, 100%) of the uracil in the open reading frame have a chemical modification, optionally wherein the vaccine is formulated in a lipid nanoparticle. In some embodiments, 100% of the uracil in the open reading frame have a chemical modification. In some embodiments, a chemical modification is in the 5- position of the uracil. In some preferred embodiments, a chemical modification is a N1-methyl pseudouridine. In some embodiments, a RNA (e.g., mRNA) vaccine further comprising an adjuvant. In some embodiments, at least one RNA polynucleotide encodes at least one influenza antigenic polypeptide that attaches to cell receptors. In some embodiments, at least one RNA polynucleotide encodes at least one influenza antigenic polypeptide that causes fusion of viral and cellular membranes. In some embodiments, at least one RNA polynucleotide encodes at least one influenza antigenic polypeptide that is responsible for binding of the virus to a cell being infected. Some embodiments of the present disclosure provide a vaccine that includes at least one ribonucleic acid (RNA) (e.g., mRNA) polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide, at least one 5′ terminal cap and at least one chemical modification, formulated within a lipid nanoparticle. In some embodiments, a 5′ terminal cap is 7mG(5′)ppp(5′)NlmpNp. In some preferred In
Figure imgf000077_0001
5- methyluridine, 2-thio-1-methyl-1-deaza-pseudouridine, 2-thio-1-methyl-pseudouridine, 2-thio-5- aza-uridine, 2-thio-dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4- methoxy-2-thio-pseudouridine, 4-methoxy-pseudouridine, 4-thio-1-methyl-pseudouridine, 4-thio- pseudouridine, 5-aza-uridine, dihydropseudouridine, 5-methoxyuridine and 2′-O-methyl uridine. In some embodiments, the chemical modification is in the 5-position of the uracil. In some embodiments, the chemical modification is a N1-methylpseudouridine. In some embodiments, the chemical modification is a N1-ethylpseudouridine. In some embodiments, a lipid nanoparticle comprises a cationic lipid, a PEG-modified lipid, a sterol and a non-cationic lipid. In some embodiments, a cationic lipid is an ionizable cationic lipid and the non-cationic lipid is a neutral lipid, and the sterol is a cholesterol. In some embodiments, a cationic lipid is selected from the group consisting of 2,2-dilinoleyl-4- dimethylaminoethyl-[1,3]-dioxolane (DLin-KC2-DMA), dilinoleyl-methyl-4-dimethylaminobutyrate (DLin-MC3-DMA), di((Z)-non-2-en-1-yl) 9-((4-(dimethylamino)butanoyl)oxy)heptadecanedioate (L319), (12Z,15Z)—N,N-dimethyl-2-nonylhenicosa-12,15-dien-1-amine (L608), and N,N- dimethyl-1-[(1S,2R)-2-octylcyclopropyl]heptadecan-8-amine (L530). Some embodiments of the present disclosure provide a vaccine that includes at least one RNA (e.g., mRNA) polynucleotide having an open reading frame encoding at least one influenza antigenic polypeptide, wherein at least 80% (e.g., 85%, 90%, 95%, 98%, 99%) of the uracil in the open reading frame have a chemical modification, optionally wherein the vaccine is formulated in a lipid nanoparticle (e.g., a lipid nanoparticle comprises a cationic lipid, a PEG- modified lipid, a sterol and a non-cationic lipid). In some embodiments, 100% of the uracil in the open reading frame have a chemical modification. In some embodiments, a chemical modification is in the 5-position of the uracil. In some embodiments, a chemical modification is a N1-methyl pseudouridine. In some embodiments, 100% of the uracil in the open reading frame have a N1-methyl pseudouridine in the 5-position of the uracil. In some embodiments, an open reading frame of a RNA (e.g., mRNA) polynucleotide encodes at least one influenza antigenic polypeptides. In some embodiments, the open reading frame encodes at least two, at least five, or at least ten antigenic polypeptides. In some embodiments, the open reading frame encodes at least 100 antigenic polypeptides. In some embodiments, the open reading frame encodes 1-100 antigenic polypeptides. In some embodiments, a vaccine comprises at least two RNA (e.g., mRNA) polynucleotides, each having an open reading frame encoding at least one influenza antigenic polypeptide. In some embodiments, the vaccine comprises at least five or at least ten RNA (e.g., mRNA) polynucleotides, each having an open reading frame encoding at least one antigenic polypeptide or an immunogenic fragment thereof. In some embodiments, the vaccine comprises at least 100 RNA (e.g., mRNA) polynucleotides, each having an open reading frame encoding at least one antigenic polypeptide. In some embodiments, the vaccine comprises 2- 100 RNA (e.g., mRNA) polynucleotides, each having an open reading frame encoding at least one antigenic polypeptide. Also provided herein is an influenza RNA (e.g., mRNA) vaccine of any one of the foregoing paragraphs formulated in a nanoparticle (e.g., a lipid nanoparticle). In some embodiments, the nanoparticle has a mean diameter of 50-200 nm. In some embodiments, the nanoparticle is a lipid nanoparticle. In some embodiments, the lipid nanoparticle comprises a cationic lipid, a PEG-modified lipid, a sterol and a non-cationic lipid. In some embodiments, the lipid nanoparticle comprises a molar ratio of about 20-60% cationic lipid, 0.5-15% PEG-modified lipid, 25-55% sterol, and 25% non-cationic lipid. In some embodiments, the cationic lipid is an ionizable cationic lipid and the non-cationic lipid is a neutral lipid, and the sterol is a cholesterol. In some embodiments, the nanoparticle has a polydispersity value of less than 0.4 (e.g., less than 0.3, 0.2 or 0.1). In some embodiments, the nanoparticle has a net neutral charge at a neutral pH value. In some embodiments, the RNA (e.g., mRNA) vaccine is multivalent. Some embodiments of the present disclosure provide methods of inducing an antigen specific immune response in a subject, comprising administering to the subject any of the RNA (e.g., mRNA) vaccine as provided herein in an amount effective to produce an antigen-specific immune response. In some embodiments, the RNA (e.g., mRNA) vaccine is an influenza vaccine. In some embodiments, the RNA (e.g., mRNA) vaccine is a combination vaccine comprising a combination of influenza vaccines (a broad spectrum influenza vaccine). In some embodiments, an antigen-specific immune response comprises a T cell response or a B cell response. In some embodiments, a method of producing an antigen-specific immune response comprises administering to a subject a single dose (no booster dose) of an influenza RNA (e.g., mRNA) vaccine of the present disclosure. In some embodiments, a method further comprises administering to the subject a second (booster) dose of an influenza RNA (e.g., mRNA) vaccine. Additional doses of an influenza RNA (e.g., mRNA) vaccine may be administered. In some embodiments, the subjects exhibit a seroconversion rate of at least 80% (e.g., at least 85%, at least 90%, or at least 95%) following the first dose or the second (booster) dose of the vaccine. Seroconversion is the time period during which a specific antibody develops and becomes detectable in the blood. After seroconversion has occurred, a virus can be detected in blood tests for the antibody. During an infection or immunization, antigens enter the blood, and the immune system begins to produce antibodies in response. Before seroconversion, the antigen itself may or may not be detectable, but antibodies are considered absent. During seroconversion, antibodies are present but not yet detectable. Any time after seroconversion, the antibodies can be detected in the blood, indicating a prior or current infection. In some embodiments, an influenza RNA (e.g., mRNA) vaccine is administered to a subject by intradermal injection, intramuscular injection, or by intranasal administration. In some embodiments, an influenza RNA (e.g., mRNA) vaccine is administered to a subject by intramuscular injection. Some embodiments, of the present disclosure provide methods of inducing an antigen specific immune response in a subject, including administering to a subject an influenza RNA (e.g., mRNA) vaccine in an effective amount to produce an antigen specific immune response in a subject. Antigen-specific immune responses in a subject may be determined, in some embodiments, by assaying for antibody titer (for titer of an antibody that binds to an influenza antigenic polypeptide) following administration to the subject of any of the influenza RNA (e.g., mRNA) vaccines of the present disclosure. In some embodiments, the anti-antigenic polypeptide antibody titer produced in the subject is increased by at least 1 log relative to a control. In some embodiments, the anti-antigenic polypeptide antibody titer produced in the subject is increased by 1-3 log relative to a control. In some embodiments, the anti-antigenic polypeptide antibody titer produced in a subject is increased at least 2 times relative to a control. In some embodiments, the anti-antigenic polypeptide antibody titer produced in the subject is increased at least 5 times relative to a control. In some embodiments, the anti-antigenic polypeptide antibody titer produced in the subject is increased at least 10 times relative to a control. In some embodiments, the anti- antigenic polypeptide antibody titer produced in the subject is increased 2-10 times relative to a control. In some embodiments, the control is an anti-antigenic polypeptide antibody titer produced in a subject who has not been administered a RNA (e.g., mRNA) vaccine of the present disclosure. In some embodiments, the control is an anti-antigenic polypeptide antibody titer produced in a subject who has been administered a live attenuated or inactivated influenza, or wherein the control is an anti-antigenic polypeptide antibody titer produced in a subject who has been administered a recombinant or purified influenza protein vaccine. In some embodiments, the control is an anti-antigenic polypeptide antibody titer produced in a subject who has been administered an influenza virus-like particle (VLP) vaccine. A RNA (e.g., mRNA) vaccine of the present disclosure is administered to a subject in an effective amount (an amount effective to induce an immune response). In some embodiments, the effective amount is a dose equivalent to an at least 2-fold, at least 4-fold, at least 10-fold, at least 100-fold, at least 1000-fold reduction in the standard of care dose of a recombinant influenza protein vaccine, wherein the anti-antigenic polypeptide antibody titer produced in the subject is equivalent to an anti-antigenic polypeptide antibody titer produced in a control subject administered the standard of care dose of a recombinant influenza protein vaccine, a purified influenza protein vaccine, a live attenuated influenza vaccine, an inactivated influenza vaccine, or an influenza VLP vaccine. In some embodiments, the effective amount is a dose equivalent to 2-1000-fold reduction in the standard of care dose of a recombinant influenza protein vaccine, wherein the anti-antigenic polypeptide antibody titer produced in the subject is equivalent to an anti-antigenic polypeptide antibody titer produced in a control subject administered the standard of care dose of a recombinant influenza protein vaccine, a purified influenza protein vaccine, a live attenuated influenza vaccine, an inactivated influenza vaccine, or an influenza VLP vaccine. In some embodiments, the control is an anti-antigenic polypeptide antibody titer produced in a subject who has been administered a virus-like particle (VLP) vaccine comprising structural proteins of influenza. In some embodiments, the RNA (e.g., mRNA) vaccine is formulated in an effective amount to produce an antigen specific immune response in a subject. In some embodiments, the effective amount is a total dose of 25 μg to 1000 μg, or 50 μg to 1000 μg. In some embodiments, the effective amount is a total dose of 100 μg. In some embodiments, the effective amount is a dose of 25 μg administered to the subject a total of two times. In some embodiments, the effective amount is a dose of 100 μg administered to the subject a total of two times. In some embodiments, the effective amount is a dose of 400 μg administered to the subject a total of two times. In some embodiments, the effective amount is a dose of 500 μg administered to the subject a total of two times. In some embodiments, the effective amount is a total dose of 1 μg to 1000 μg, or 1 μg to 100 μg of saRNA. In some embodiments, the effective amount is a total dose of 30 μg. In some embodiments, the effective amount is a dose of 10 μg administered to the subject a total of two times. In some embodiments, the effective amount is a dose of 10 μg administered to the subject a total of two times. In some embodiments, the effective amount is a dose of 15 μg administered to the subject a total of two times. In some embodiments, the effective amount is a dose of 30 μg administered to the subject a total of two times. In some embodiments, the method includes administering to the subject a saRNA composition described herein at dosage of between 10 μg/kg and 400 μg/kg is administered to the subject. In some embodiments the dosage of the saRNA polynucleotide is 1-5 μg, 5-10 μg, 10-15 μg, 15-20 μg, 10-25 μg, 20-25 μg, 20-50 μg, 30-50 μg, 40-50 μg, 40-60 μg, 60-80 μg, 60-100 μg, 50-100 μg, 80-120 μg, 40-120 μg, 40-150 μg, 50-150 μg, 50-200 μg, 80-200 μg, 100-200 μg, 120-250 μg, 150-250 μg, 180-280 μg, 200-300 μg, 50-300 μg, 80-300 μg, 100-300 μg, 40- 300 μg, 50-350 μg, 100-350 μg, 200-350 μg, 300-350 μg, 320-400 μg, 40-380 μg, 40-100 μg, 100-400 μg, 200-400 μg, or 300-400 μg per dose. In some embodiments, the saRNA composition is administered to the subject by intradermal or intramuscular injection. In some embodiments, the saRNA composition is administered to the subject on day zero. In some embodiments, a second dose of the saRNA composition is administered to the subject on day twenty-one. In some embodiments, the efficacy (or effectiveness) of a RNA (e.g., mRNA) vaccine is greater than 60%. In some embodiments, the RNA (e.g., mRNA) polynucleotide of the vaccine at least one Influenza antigenic polypeptide. Vaccine efficacy may be assessed using standard analyses. For example, vaccine efficacy may be measured by double-blind, randomized, clinical controlled trials. Vaccine efficacy may be expressed as a proportionate reduction in disease attack rate (AR) between the unvaccinated (ARU) and vaccinated (ARV) study cohorts and can be calculated from the relative risk (RR) of disease among the vaccinated group with use of the following formulas: Efficacy=(ARU−ARV)/ARU×100; and Efficacy=(1−RR)×100. Likewise, vaccine effectiveness may be assessed using standard analyses. Vaccine effectiveness is an assessment of how a vaccine (which may have already proven to have high vaccine efficacy) reduces disease in a population. This measure can assess the net balance of benefits and adverse effects of a vaccination program, not just the vaccine itself, under natural field conditions rather than in a controlled clinical trial. Vaccine effectiveness is proportional to vaccine efficacy (potency) but is also affected by how well target groups in the population are immunized, as well as by other non-vaccine-related factors that influence the ‘real-world’ outcomes of hospitalizations, ambulatory visits, or costs. For example, a retrospective case control analysis may be used, in which the rates of vaccination among a set of infected cases and appropriate controls are compared. Vaccine effectiveness may be expressed as a rate difference, with use of the odds ratio (OR) for developing infection despite vaccination: Effectiveness=(1−OR)×100. In some embodiments, the efficacy (or effectiveness) of a RNA (e.g., mRNA) vaccine is at least 65%, at least 70%, at least 75%, at least 80%, at least 85%, or at least 90%. In some embodiments, the vaccine immunizes the subject against Influenza for up to 2 years. In some embodiments, the vaccine immunizes the subject against Influenza for more than 2 years, more than 3 years, more than 4 years, or for 5-10 years. In some embodiments, the subject is about 5 years old or younger. For example, the subject may be between the ages of about 1 year and about 5 years (e.g., about 1, 2, 3, 5 or 5 years), or between the ages of about 6 months and about 1 year (e.g., about 6, 7, 8, 9, 10, 11 or 12 months). In some embodiments, the subject is about 12 months or younger (e.g., 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2 months or 1 month). In some embodiments, the subject is about 6 months or younger. In some embodiments, the RNA composition is administered to the subject by intradermal or intramuscular injection. In some embodiments, the RNA composition is administered to the subject on day zero. In some embodiments, a second dose of the RNA composition is administered to the subject on day twenty-one. In some embodiments, the subject was born full term (e.g., about 37-42 weeks). In some embodiments, the subject was born prematurely, for example, at about 36 weeks of gestation or earlier (e.g., about 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26 or 25 weeks). For example, the subject may have been born at about 32 weeks of gestation or earlier. In some embodiments, the subject was born prematurely between about 32 weeks and about 36 weeks of gestation. In such subjects, a RNA (e.g., mRNA) vaccine may be administered later in life, for example, at the age of about 6 months to about 5 years, or older. In some embodiments, the subject is a young adult between the ages of about 20 years and about 50 years (e.g., about 20, 25, 30, 35, 40, 45 or 50 years old). In some embodiments, the subject is an elderly subject about 60 years old, about 70 years old, or older (e.g., about 60, 65, 70, 75, 80, 85 or 90 years old). In some embodiments, the subject has been exposed to influenza (e.g., C. trachomatis); the subject is infected with influenza (e.g., C. trachomatis); or subject is at risk of infection by influenza (e.g., C. trachomatis). In some embodiments, the subject has been exposed to betacoronavirus (e.g., SARS- CoV-2); the subject is infected with betacoronavirus (e.g., SARS-CoV-2); or subject is at risk of infection by betacoronavirus (e.g., SARS-CoV-2). In some embodiments, the subject has received at least one dose of an immunogenic composition against betacoronavirus (e.g., SARS-CoV-2), e.g., selected from any one of COMIRNATY®, the Pfizer-BioNTech COVID-19 vaccine, the Moderna mRNA-1273 COVID-19 vaccine, and the Janssen COVID-19 vaccine; the subject has received at least two doses of an immunogenic composition against betacoronavirus (e.g., SARS-CoV-2); the subject is receiving at least one dose of an immunogenic composition against betacoronavirus (e.g., SARS-CoV-2), e.g., selected from any one of COMIRNATY®, the Pfizer-BioNTech COVID-19 vaccine, the Moderna mRNA-1273 COVID-19 vaccine, and the Janssen COVID-19 vaccine; or the subject is being administered an immunogenic composition against betacoronavirus (e.g., SARS-CoV-2), e.g., selected from any one of COMIRNATY®, the Pfizer-BioNTech COVID-19 vaccine, the Moderna mRNA-1273 COVID-19 vaccine, and the Janssen COVID-19 vaccine at risk of infection by betacoronavirus (e.g., SARS-CoV-2) concomitantly, simultaneously, or within 12-48 hours of any one of the immunogenic compositions against influenza disclosed herein.In some embodiments, the subject is immunocompromised (has an impaired immune system, e.g., has an immune disorder or autoimmune disorder). In some embodiments the nucleic acid vaccines described herein are chemically modified. In other embodiments the nucleic acid vaccines are unmodified. Yet other aspects provide compositions for and methods of vaccinating a subject comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a first virus antigenic polypeptide, wherein the RNA polynucleotide does not include a stabilization element, and wherein an adjuvant is not coformulated or co-administered with the vaccine. In other aspects the invention is a composition for or method of vaccinating a subject comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide wherein a dosage of between 10 μg/kg and 400 μg/kg of the nucleic acid vaccine is administered to the subject. In some embodiments the dosage of the RNA polynucleotide is 1-5 μg, 5-10 μg, 10-15 μg, 15-20 μg, 10-25 μg, 20-25 μg, 20-50 μg, 30-50 μg, 40-50 μg, 40-60 μg, 60-80 μg, 60-100 μg, 50-100 μg, 80-120 μg, 40-120 μg, 40-150 μg, 50-150 μg, 50-200 μg, 80-200 μg, 100-200 μg, 120-250 μg, 150-250 μg, 180-280 μg, 200-300 μg, 50-300 μg, 80-300 μg, 100-300 μg, 40- 300 μg, 50-350 μg, 100-350 μg, 200-350 μg, 300-350 μg, 320-400 μg, 40-380 μg, 40-100 μg, 100-400 μg, 200-400 μg, or 300-400 μg per dose. In some embodiments, the nucleic acid vaccine is administered to the subject by intradermal or intramuscular injection. In some embodiments, the nucleic acid vaccine is administered to the subject on day zero. In some embodiments, a second dose of the nucleic acid vaccine is administered to the subject on day twenty-one. In some embodiments, a dosage of 25 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 100 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 50 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 75 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 150 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 400 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, a dosage of 200 micrograms of the RNA polynucleotide is included in the nucleic acid vaccine administered to the subject. In some embodiments, the RNA polynucleotide accumulates at a 100-fold higher level in the local lymph node in comparison with the distal lymph node. In other embodiments the nucleic acid vaccine is chemically modified and in other embodiments the nucleic acid vaccine is not chemically modified. Aspects of the disclosure provide a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide, wherein the RNA polynucleotide does not include a stabilization element, and a pharmaceutically acceptable carrier or excipient, wherein an adjuvant is not included in the vaccine. In some embodiments, the stabilization element is a histone stem-loop. In some embodiments, the stabilization element is a nucleic acid sequence having increased GC content relative to wild type sequence. Aspects of the disclosure provide nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide, wherein the RNA polynucleotide is present in the formulation for in vivo administration to a host, which confers an antibody titer superior to the criterion for seroprotection for the first antigen for an acceptable percentage of human subjects. In some embodiments, the antibody titer produced by the mRNA vaccines of the disclosure is a neutralizing antibody titer. In some embodiments the neutralizing antibody titer is greater than a protein vaccine. In other embodiments the neutralizing antibody titer produced by the mRNA vaccines of the disclosure is greater than an adjuvanted protein vaccine. In yet other embodiments the neutralizing antibody titer produced by the mRNA vaccines of the disclosure is 1,000-10,000, 1,200-10,000, 1,400-10,000, 1,500- 10,000, 1,000-5,000, 1,000-4,000, 1,800-10,000, 2000-10,000, 2,000-5,000, 2,000-3,000, 2,000-4,000, 3,000-5,000, 3,000-4,000, or 2,000-2,500. A neutralization titer is typically expressed as the highest serum dilution required to achieve a 50% reduction in the number of plaques. Also provided are nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide, wherein the RNA polynucleotide is present in a formulation for in vivo administration to a host for eliciting a longer lasting high antibody titer than an antibody titer elicited by an mRNA vaccine having a stabilizing element or formulated with an adjuvant and encoding the first antigenic polypeptide. In some embodiments, the RNA polynucleotide is formulated to produce a neutralizing antibodies within one week of a single administration. In some embodiments, the adjuvant is selected from a cationic peptide and an immunostimulatory nucleic acid. In some embodiments, the cationic peptide is protamine. Aspects provide nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame comprising at least one chemical modification or optionally no modified nucleotides, the open reading frame encoding a first antigenic polypeptide, wherein the RNA polynucleotide is present in the formulation for in vivo administration to a host such that the level of antigen expression in the host significantly exceeds a level of antigen expression produced by an mRNA vaccine having a stabilizing element or formulated with an adjuvant and encoding the first antigenic polypeptide. Other aspects provide nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame comprising at least one chemical modification or optionally no modified nucleotides, the open reading frame encoding a first antigenic polypeptide, wherein the vaccine has at least 10-fold less RNA polynucleotide than is required for an unmodified mRNA vaccine to produce an equivalent antibody titer. In some embodiments, the RNA polynucleotide is present in a dosage of 25-100 micrograms. Aspects of the disclosure also provide a unit of use vaccine, comprising between 10 ug and 400 ug of one or more RNA polynucleotides having an open reading frame comprising at least one chemical modification or optionally no modified nucleotides, the open reading frame encoding a first antigenic polypeptide, and a pharmaceutically acceptable carrier or excipient, formulated for delivery to a human subject. In some embodiments, the vaccine further comprises a cationic lipid nanoparticle. Aspects of the disclosure provide methods of creating, maintaining or restoring antigenic memory to a virus strain in an individual or population of individuals comprising administering to said individual or population an antigenic memory booster nucleic acid vaccine comprising (a) at least one RNA polynucleotide, said polynucleotide comprising at least one chemical modification or optionally no modified nucleotides and two or more codon-optimized open reading frames, said open reading frames encoding a set of reference antigenic polypeptides, and (b) optionally a pharmaceutically acceptable carrier or excipient. In some embodiments, the vaccine is administered to the individual via a route selected from the group consisting of intramuscular administration, intradermal administration, and subcutaneous administration. In some embodiments, the administering step comprises contacting a muscle tissue of the subject with a device suitable for injection of the composition. In some embodiments, the administering step comprises contacting a muscle tissue of the subject with a device suitable for injection of the composition in combination with electroporation. In some aspects, methods of inducing an antigen specific immune response in a subject are provided. The method includes administering to the subject an influenza RNA composition in an amount effective to produce an antigen specific immune response. In some embodiments, an antigen specific immune response comprises a T cell response or a B cell response. In some embodiments, an antigen specific immune response comprises a T cell response and a B cell response. In some embodiments, a method of producing an antigen specific immune response involves a single administration of the vaccine. In some embodiments, a method further includes administering to the subject a booster dose of the vaccine. In some embodiments, a vaccine is administered to the subject by intradermal or intramuscular injection. Aspects of the disclosure provide methods of vaccinating a subject comprising administering to the subject a single dosage of between 25 ug/kg and 400 ug/kg of a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a first antigenic polypeptide in an effective amount to vaccinate the subject. Other aspects provide nucleic acid vaccines comprising one or more RNA polynucleotides having an open reading frame comprising at least one chemical modification, the open reading frame encoding a first antigenic polypeptide, wherein the vaccine has at least 10-fold less RNA polynucleotide than is required for an unmodified mRNA vaccine to produce an equivalent antibody titer. In some embodiments, the RNA polynucleotide is present in a dosage of 25-100 micrograms. Other aspects provide nucleic acid vaccines comprising an LNP formulated RNA polynucleotide having an open reading frame comprising no nucleotide modifications (unmodified), the open reading frame encoding a first antigenic polypeptide, wherein the vaccine has at least 10-fold less RNA polynucleotide than is required for an unmodified mRNA vaccine not formulated in a LNP to produce an equivalent antibody titer. In some embodiments, the RNA polynucleotide is present in a dosage of 25-100 micrograms. The data presented in the Examples demonstrate significant enhanced immune responses using the formulations of the disclosure. Both chemically modified and unmodified RNA vaccines are useful according to the invention. Surprisingly, in contrast to prior art reports that it was preferable to use chemically unmodified mRNA formulated in a carrier to produce vaccines, it is described herein that chemically modified mRNA-LNP vaccines required a much lower effective mRNA dose than unmodified mRNA, i.e., tenfold less than unmodified mRNA when formulated in carriers other than LNP. Both the chemically modified and unmodified RNA vaccines of the disclosure produce better immune responses than mRNA vaccines formulated in a different lipid carrier. In other aspects the invention encompasses a method of treating an elderly subject age 60 years or older comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a virus antigenic polypeptide in an effective amount to vaccinate the subject. In other aspects the invention encompasses a method of treating a young subject age 17 years or younger comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a virus antigenic polypeptide in an effective amount to vaccinate the subject. In other aspects the invention encompasses a method of treating an adult subject comprising administering to the subject a nucleic acid vaccine comprising one or more RNA polynucleotides having an open reading frame encoding a virus antigenic polypeptide in an effective amount to vaccinate the subject. In some aspects the invention is a method of vaccinating a subject with a combination vaccine including at least two nucleic acid sequences encoding antigens wherein the dosage for the vaccine is a combined therapeutic dosage wherein the dosage of each individual nucleic acid encoding an antigen is a sub therapeutic dosage. In some embodiments, the combined dosage is 25 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In some embodiments, the combined dosage is 100 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In some embodiments the combined dosage is 50 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In some embodiments, the combined dosage is 75 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In some embodiments, the combined dosage is 150 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In some embodiments, the combined dosage is 400 micrograms of the RNA polynucleotide in the nucleic acid vaccine administered to the subject. In preferred aspects, vaccines of the disclosure (e.g., LNP-encapsulated mRNA vaccines) produce prophylactically- and/or therapeutically efficacious levels, concentrations and/or titers of antigen-specific antibodies in the blood or serum of a vaccinated subject. As defined herein, the term antibody titer refers to the amount of antigen-specific antibody produces in s subject, e.g., a human subject. In exemplary embodiments, antibody titer is expressed as the inverse of the greatest dilution (in a serial dilution) that still gives a positive result. In exemplary embodiments, antibody titer is determined or measured by enzyme-linked immunosorbent assay (ELISA). In exemplary embodiments, antibody titer is determined or measured by neutralization assay, e.g., by microneutralization assay. In certain aspects, antibody titer measurement is expressed as a ratio, such as 1:40, 1:100, etc. In exemplary embodiments of the disclosure, an efficacious vaccine produces an antibody titer of greater than 1:40, greater that 1:100, greater than 1:400, greater than 1:1000, greater than 1:2000, greater than 1:3000, greater than 1:4000, greater than 1:500, greater than 1:6000, greater than 1:7500, greater than 1:10000. In exemplary embodiments, the antibody titer is produced or reached by 10 days following vaccination, by 20 days following vaccination, by 30 days following vaccination, by 40 days following vaccination, or by 50 or more days following vaccination. In exemplary embodiments, the titer is produced or reached following a single dose of vaccine administered to the subject. In other embodiments, the titer is produced or reached following multiple doses, e.g., following a first and a second dose (e.g., a booster dose.) In exemplary aspects of the disclosure, antigen-specific antibodies are measured in units of μg/ml or are measured in units of IU/L (International Units per liter) or mIU/ml (milli International Units per ml). In exemplary embodiments of the disclosure, an efficacious vaccine produces >0.5 μg/ml, >0.1 μg/ml, >0.2 μg/ml, >0.35 μg/ml, >0.5 μg/ml, >1 μg/ml, >2 μg/ml, >5 μg/ml or >10 μg/ml. In exemplary embodiments of the disclosure, an efficacious vaccine produces >10 mIU/ml, >20 mIU/ml, >50 mIU/ml, >100 mIU/ml, >200 mIU/ml, >500 mIU/ml or >1000 mIU/ml. In exemplary embodiments, the antibody level or concentration is produced or reached by 10 days following vaccination, by 20 days following vaccination, by 30 days following vaccination, by 40 days following vaccination, or by 50 or more days following vaccination. In exemplary embodiments, the level or concentration is produced or reached following a single dose of vaccine administered to the subject. In other embodiments, the level or concentration is produced or reached following multiple doses, e.g., following a first and a second dose (e.g., a booster dose.) In exemplary embodiments, antibody level or concentration is determined or measured by enzyme-linked immunosorbent assay (ELISA). In exemplary embodiments, antibody level or concentration is determined or measured by neutralization assay, e.g., by microneutralization assay. In some aspects, the disclosure provides a method comprising administering to a human subject a composition comprising: (a) a first messenger ribonucleic acid (mRNA) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid, and wherein the composition comprises 50 or 25 µg to 200 µg of the mRNA in total. In some embodiments, the composition comprises 25 µg of the mRNA in total. In some embodiments, the composition comprises 50 µg of the mRNA in total. In some embodiments, the composition comprises 100 µg of the mRNA in total. In some embodiments, the composition comprises 200 µg of the mRNA in total. In preferred embodiments, the ratio of the first:second:third:fourth mRNA is not 1:1:1:1. In preferred embodiments, the ratio of the first:second:third:fourth mRNA is 1:1: greater than 1: greater than 1, influenza A:A:B:B respectively. In preferred embodiments, the ratio of the first:second:third:fourth mRNA is 1:1:2:2, influenza A:A:B:B respectively. In preferred embodiments, the ratio of the first:second:third:fourth mRNA is 1:1:4:4, influenza A:A:B:B respectively. In some embodiments, each mRNA comprises a 5’ cap analog. In some embodiments, the 5’ cap analog is a 5’ 7mG(5’)ppp(5’)NlmpNp cap. In some embodiments, each mRNA comprises a chemical modification. In some embodiments, the chemical modification is 1-methylpseudouridine. In some embodiments, the lipid nanoparticle comprises 40-50 mol% ionizable amino lipid, 35-45 mol% sterol, 10-15 mol% neutral lipid, and 2-4 mol% PEG-modified lipid. In some embodiments, the lipid nanoparticle comprises 45 mol%, 46 mol%, 47 mol%, 48 mol%, 49 mol%, or 50 mol% ionizable amino lipid. In some embodiments, the sterol is cholesterol. In some embodiments, the neutral lipid is 1,2 distearoyl-sn-glycero-3-phosphocholine (DSPC). In some embodiments, the PEG-modified lipid is 1,2 dimyristoyl-sn-glycerol, methoxypolyethyleneglycol (PEG2000 DMG). In some embodiments, the composition further comprises Tris buffer, sucrose, and sodium acetate. In some embodiments, the composition comprises 10 mM – 30 mM Tris buffer, 75 mg/mL – 95 mg/mL sucrose, and 5 mM – 15 mM sodium acetate, optionally wherein the composition has a pH of 6-8. In some embodiments, the composition comprises 20 mM Tris buffer, 87 mg/mL sucrose, and 10.7 mM sodium acetate, optionally wherein the composition has a pH of 7.5. In some embodiments, the composition comprises 0.5 mg/mL of the mRNA. In some embodiments, the composition is administered intramuscularly, optionally into a deltoid region of the human subject. In some embodiments, the human subject is 18 to 49 years of age. In some embodiments, the human subject is at least 50 years of age. In some embodiments, the human subject is 50-64 years of age. In some embodiments, the human subject is at least 65 years of age. In some embodiments, the human subject is seropositive for at least one of the HA antigens. In some embodiments, the human subject is seropositive for all of the HA antigens. In some embodiments, the subject is seronegative for all of the HA antigens. In some embodiments, the HA antigens are recommended by or selected according to standardized criteria used by World Health Organization’s Global Influenza Surveillance and Response System (GISRS). In some embodiments, the HA antigen are selected using a hemagglutinin inhibition (HAI) assay to identify circulating influenza viruses that are antigenically similar to influenza viruses from a previous season’s vaccine, optionally wherein influenza viruses are considered to be antigenically similar if their HAI titers differ by two dilutions or less. In some embodiments, the first mRNA encodes an influenza A HA antigen of the H1 subtype, the second mRNA encodes an influenza A HA antigen of the H3 subtype, the third mRNA encodes an influenza B HA antigen of the B/Yamagata lineage, and the fourth mRNA encodes an influenza B HA antigen of the B/Victoria lineage. In some embodiments, the mRNA vaccine is administered in an amount effective to induce a neutralizing antibody response against influenza A H1N1, influenza A H3N2, influenza B/Yamagata, and influenza B/Victoria. In some embodiments, the mRNA vaccine is administered in an amount effective to induce a T cell response against influenza A H1N1, influenza A H3N2, influenza B/Yamagata, and influenza B/Victoria. The disclosure, in another aspect, provides a composition comprising: (a) a first messenger ribonucleic acid (mRNA) comprising an open reading frame (ORF) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid; wherein the ratio of the first:second:third:fourth mRNA is 1:1:greater than 1: greater than 1, influenza A:A:B:B strains, respectively. The disclosure, in another aspect, provides a composition comprising: (a) a first messenger ribonucleic acid (mRNA) comprising an open reading frame (ORF) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid; wherein the ratio of the first:second:third:fourth mRNA is 1:1:greater than 1:greater than 1, influenza A:A:B:B strains, respectively. Another aspect of the disclosure provides a composition comprising: (a) a first messenger ribonucleic acid (mRNA) comprising an open reading frame (ORF) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid; wherein the ratio of the first:second:third:fourth mRNA is 1:1:greater than 1: greater than 1, influenza A:A:B:B strains, respectively, and wherein the composition comprises 100 µg of the mRNA in total. The disclosure, in another aspect, provides a composition comprising: (a) a first messenger ribonucleic acid (mRNA) comprising an open reading frame (ORF) encoding a hemagglutinin (HA) antigen of a first influenza A virus and a second mRNA encoding an HA antigen of a second influenza A virus, wherein the influenza A HA antigens are of different subtypes; and (b) a third mRNA encoding an HA antigen of a first influenza B virus and a fourth mRNA encoding an HA antigen of a second influenza B virus, wherein the influenza B HA antigens are of different lineages, and wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid; wherein the ratio of the first:second:third:fourth mRNA is 1:1:greater than 1:greater than 1, influenza A:A:B:B strains, respectively, and wherein the composition comprises 200 µg of the mRNA in total. Another aspect of the disclosure includes a method for vaccinating a human subject, comprising administering an mRNA vaccine comprising mRNA encoding at least 4 influenza antigens, wherein the influenza antigens comprise at least 2 hemagglutinin (HA) A antigens, each of a different subtype and at least 2 HA B antigens, each of a different lineage, in an effective amount to produce an antigen specific immune response in the subject. In some embodiments, the influenza antigens are encoded by one to four mRNAs. In some embodiments, the mRNA comprises a single mRNA encoding the at least 4 influenza antigens. In some embodiments, the mRNA comprises four mRNA each comprising a single open reading frame (ORF) encoding one of the 4 influenza antigens. In some embodiments, the 4 influenza antigens comprise an influenza A HA antigen of the H1 subtype, an influenza A HA antigen of the H3 subtype, an influenza B HA antigen of the B/Yamagata lineage, and an influenza B HA antigen of the B/Victoria lineage. Another aspect of the disclosure provides a composition comprising an mRNA vaccine comprising mRNA encoding at least 4 influenza antigens, wherein the influenza antigens comprise at least 2 hemagglutinin (HA) A antigens, each of a different subtype and at least 2 HA B antigens, each of a different lineage, wherein the composition further comprises a lipid nanoparticle comprising 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid. In some embodiments, the influenza antigens are encoded by one to four mRNAs. In some embodiments, the mRNA comprises a single mRNA encoding the at least 4 influenza antigens. In some embodiments, the mRNA comprises four mRNA each comprising a single open reading frame (ORF) encoding one of the 4 influenza antigens. In some embodiments, the 4 influenza antigens comprise an influenza A HA antigen of the H1 subtype, an influenza A HA antigen of the H3 subtype, an influenza B HA antigen of the B/Yamagata lineage, and an influenza B HA antigen of the B/Victoria lineage. In some embodiments, the 4 mRNA are present in the composition in 1:1:greater than 1:greater than 1 ratio, influenza A:A:B:B strains, respectively. In some embodiments, the composition comprises 25 µg to 200 µg of the mRNA in total. In some embodiments, the percentage of subjects with seroconversion with respect to one of the four influenza antigens after a single dose at Day 29 is at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with seroconversion with respect to one of the four influenza antigens after a single dose at Day 29 is 100%. In some embodiments, the percentage of subjects with seroconversion with respect to two of the four influenza antigens after a single dose at Day 29 is at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with seroconversion with respect to two of the four influenza antigens after a single dose at Day 29 is 100%. In some embodiments, the percentage of subjects with seroconversion with respect to three of the four influenza antigens after a single dose at Day 29 is at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with seroconversion with respect to three of the four influenza antigens after a single dose at Day 29 is 100%. In some embodiments, the percentage of subjects with seroconversion with respect to all four of the influenza antigens after a single dose at Day 29 is at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with seroconversion with respect to all four of the influenza antigens after a single dose at Day 29 is 100%. In some embodiments, the percentage of subjects with at least a 2-fold rise in geometric mean fold rise (GMFR) after a single dose at Day 29 is at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with a 2-fold rise in GMFR after a single dose at Day 29 is 100%. In some embodiments, the percentage of subjects with a 4-fold rise in GMFR after a single dose at Day 29 is at least 80%, at least 90%, at least 95% or 100%. In some embodiments, the percentage of subjects with a 4-fold rise in GMFR after a single dose at Day 29 is 100%. In some embodiments, the GMFR comprises the H1N1 HAI titer GMFR. In some embodiments, the GMFR comprises the H3N2 HAI titer GMFR. In some embodiments, the GMFR comprises the B/Yamagata HAI titer GMFR. In some embodiments, the GMFR comprises the B/Victoria HAI titer GMFR. In some embodiments, the serum antibody titers are increased 4-fold over baseline (Day 0) at Day 29 and Day 57 after a single dose. In some embodiments, the serum antibody titers are decreased at Day 181 over Day 29 titers after a single dose. In some embodiments, the microneutralization titers are increased 4-fold over baseline (Day 0) at Day 29 and/or Day 57 after a single dose. In some embodiments, the microneutralization titers are decreased at Day 181 over Day 29 titers after a single dose. In some embodiments, the composition comprises an approximately 25 µg to 250 µg dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). In some embodiments, the composition comprises equal amounts of each of the mRNA encoding each of the four HA proteins (e.g., the mRNA are present in the composition at a 1:1:greater than 1: greater than 1 ratio, influenza A:A:B:B strains, respectively). In some embodiments, a composition comprises an approximately 25 µg dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). In some embodiments, a composition comprises an approximately 50 µg dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). In some embodiments, a composition comprises an approximately 100 µg dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). In some embodiments, a composition comprises an approximately 150 µg dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). In some embodiments, a composition comprises an approximately 200 µg dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). In some embodiments, a composition comprises an approximately 250 µg dose of mRNA encoding four influenza HA proteins (e.g., HA proteins associated with the A/H1N1 strain, A/H3N2 strain, B/Victoria lineage and B/Yamagata lineage). A composition may further comprise a buffer, for example a Tris buffer. For example, a composition may comprise 10 mM – 30 mM, 10 mM – 20 mM, or 20 mM – 30 mM Tris buffer. In some embodiments, a composition comprises 10, 15, 20, 25, or 30 mM Tris buffer. In some embodiments, a composition comprises 20 mM Tris buffer. In some embodiments, mRNA of a composition is formulated at a concentration of 0.1 – 1 mg/mL. In some embodiments, mRNA of a composition is formulated at a concentration of 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9, or 1 mg/mL. In some embodiments, mRNA of a composition is formulated at a concentration of 0.5 mg/mL. In some embodiments, a composition comprises sucrose. For example, a composition may comprise 75 mg/mL – 95 mg/mL, 75 mg/mL – 85 mg/mL, or 85 mg/mL – 95 mg/mL sucrose. In some embodiments, a composition comprises 75, 80, 85, 86, 87, 88, 89, 90, or 95 mg/mL sucrose. In some embodiments, a composition comprises 87 mg/mL sucrose. In preferred embodiments, a composition does not include sodium acetate. A composition may have a pH value of 6-8. In some embodiments, a composition has a pH value of 6, 6.5, 7, 7.5, or 8. In some embodiments, a composition has a pH value of 7.5. In some embodiments, the composition further comprises a mixture of lipids. The mixture of lipids typically forms a lipid nanoparticle. The mRNA described herein, in some embodiments, is formulated with a lipid nanoparticle (e.g., for administration to a subject). In some embodiments, the lipid mixture, and thus the lipid nanoparticle, comprises: an ionizable amino lipid; a neutral lipid; a sterol; and a PEG-modified lipid. For example, the lipid mixture/lipid nanoparticle may comprise: 20-60 mol% ionizable amino lipid; 5-25 mol% neutral lipid; 25-55 mol% sterol; and 0.5-15 mol% PEG-modified lipid. In some embodiments, the lipid nanoparticle comprises: 20-60 mol% ionizable amino lipid; 5-25 mol% neutral lipid; 25-55 mol% sterol; and 0.5-15 mol% PEG-modified lipid. In some embodiments, the lipid nanoparticle comprises: 40-55 mol% ionizable amino lipid; 5-15 mol% neutral lipid; 35-45 mol% sterol; and 1-5 mol% PEG-modified lipid. For example, the lipid nanoparticle may comprise: (a) 47 mol% ionizable amino lipid; 11.5 mol% neutral lipid; 38.5 mol% sterol; and 3.0 mol% PEG-modified lipid; (b) 48 mol% ionizable amino lipid; 11 mol% neutral lipid; 38.5 mol% sterol; and 2.5 mol% PEG-modified lipid; (c) 49 mol% ionizable amino lipid; 10.5 mol% neutral lipid; 38.5 mol% sterol; and 2.0 mol% PEG-modified lipid; (d) 50 mol% ionizable amino lipid; 10 mol% neutral lipid; 38.5 mol% sterol; and 1.5 mol% PEG-modified lipid; or (e) 51 mol% ionizable amino lipid; 9.5 mol% neutral lipid; 38.5 mol% sterol; and 1.0 mol% PEG-modified lipid. In some embodiments, the lipid mixture, and thus the lipid nanoparticle, comprises 20-55 mol%, 20-50 mol%, 20-45 mol%, 20-40 mol%, 25-60 mol%, 25-55 mol%, 25- 50 mol%, 25-45 mol%, 25-40 mol%, 30-60 mol%, 30-55 mol%, 30-50 mol%, 30-45 mol%, 30-40 mol%, 35-60 mol%, 35-55 mol%, 35-50 mol%, 35-45 mol%, 35-40 mol%, 40-60 mol%, 40-55 mol%, 40-50 mol%, 40-45 mol%, 50-60 mol%, 50-55 mol%, or 55-60 mol% ionizable amino lipid. In some embodiments, the lipid mixture, and thus the lipid nanoparticle, comprises 5-20 mol%, 5-15 mol%, 5-10 mol%, 10-25 mol%, 10-20 mol%, 10-15 mol%, 15-25 mol%, 15-20 mol%, or 20-25 mol% neutral lipid. In some embodiments, the lipid mixture, and thus the lipid nanoparticle, comprises 25-50 mol%, 25-45 mol%, 25-40 mol%, 25-35 mol%, 25-30 mol%, 30- 55 mol%, 30-50 mol%, 30-45 mol%, 30-40 mol%, 30-35 mol%, 35-55 mol%, 35-50 mol%, 35-45 mol%, 35-40 mol%, 40-55 mol%, 40-50 mol%, 40-45 mol%, 45-55 mol%, 45-50 mol%, or 50-55 mol% sterol. In some embodiments, the lipid mixture, and thus the lipid nanoparticle, comprises 0.5-10 mol%, 0.5-5 mol%, 0.5-1 mol%, 1-15%, 1-10 mol%, 1-5 mol%, 1.5-15%, 1.5-10 mol%, 1.5-5 mol%, 2-15%, 2-10 mol%, 2-5 mol%, 2.5-15%, 2.5-10 mol%, 2.5-5 mol%, 3-15%, 3-10 mol%, or 3-5 mol%, PEG-modified lipid. In some embodiments, the lipid mixture comprises: 50 mol% ionizable amino lipid; 10 mol% neutral lipid; 38.5 mol% sterol; and 1.5 mol% PEG- modified lipid. In some embodiments, the ionizable amino lipid is heptadecan-9-yl 8 ((2 hydroxyethyl)(6 oxo 6-(undecyloxy)hexyl)amino)octanoate. In some embodiments, the neutral lipid is 1,2 distearoyl sn glycero-3 phosphocholine (DSPC). In some embodiments, the sterol is cholesterol. In some embodiments, the PEG-modified lipid is 1- monomethoxypolyethyleneglycol-2,3-dimyristylglycerol with polyethylene glycol of average molecular weight 2000 (PEG2000 DMG). A composition may further include a pharmaceutically-acceptable excipient, inert or active. A pharmaceutically acceptable excipient, after administered to a subject, does not cause undesirable physiological effects. The excipient in the pharmaceutical composition must be “acceptable” also in the sense that it is compatible with mRNA and can be capable of stabilizing it. One or more excipients (e.g., solubilizing agents) can be utilized as pharmaceutical carriers for delivery of the mRNA. Examples of a pharmaceutically acceptable excipients include, but are not limited to, biocompatible vehicles (e.g., LNPs), carriers, adjuvants, additives, and diluents to achieve a composition usable as a dosage form. Examples of other excipients include colloidal silicon oxide, magnesium stearate, cellulose, and sodium lauryl sulfate. Additional suitable pharmaceutical excipients, as well as pharmaceutical necessities for their use, are described in Remington's Pharmaceutical Sciences. In some embodiments, an mRNA is formulated using one or more excipients to: (1) increase stability; (2) increase cell transfection; (3) permit the sustained or delayed release (e.g., from a depot formulation); (4) alter the biodistribution (e.g., target to specific tissues or cell types); (5) increase the translation of encoded protein in vivo; and/or (6) alter the release profile of encoded protein (antigen) in vivo. In addition to traditional excipients such as any and all solvents, dispersion media, diluents, or other liquid vehicles, dispersion or suspension aids, surface active agents, isotonic agents, thickening or emulsifying agents, preservatives, excipients can include, without limitation, lipidoids, liposomes, lipid nanoparticles, polymers, lipoplexes, core-shell nanoparticles, peptides, proteins, cells transfected with the RNA (e.g., for transplantation into a subject), hyaluronidase, nanoparticle mimics and combinations thereof. In some embodiments, a composition comprising mRNA does not include an adjuvant (the composition is adjuvant-free). Compositions may be sterile, pyrogen-free or both sterile and pyrogen-free. General considerations in the formulation and/or manufacture of pharmaceutical agents, such as compositions, may be found, for example, in Remington: The Science and Practice of Pharmacy 21st ed., Lippincott Williams & Wilkins, 2005. Formulations of the compositions described herein may be prepared by any method known or hereafter developed in the art of pharmacology. In general, such preparatory methods include the step of bringing the mRNA into association with an excipient (e.g., a mixture of lipids and/or a lipid nanoparticle), and then, if necessary and/or desirable, dividing, shaping and/or packaging the product into a desired single- or multi-dose unit. Relative amounts of the mRNA, the pharmaceutically- acceptable excipient, and/or any additional ingredients in a composition in accordance with the disclosure may vary, depending upon the identity, size, and/or condition of the subject treated and further depending upon the route by which the composition is to be administered. In some embodiments, the present disclosure demonstrates that an improved immune response can be produced by increasing the relative amount of RNA encoding an antigen of a type B influenza virus as compared to RNA encoding an influenza type A virus (e.g., an immune response that comprises higher neutralization titers against an influenza type B virus (e.g., higher neutralization titers as compared to a composition comprising equal amounts of RNA encoding an influenza type A antigen and RNA encoding an influenza type B antigen (e.g., as determined by a pseudovirus neutralization assay described herein))). The present disclosure also provides exemplary doses of RNA that can produce strong immune responses against both types of influenza viruses (e.g., neutralizing titers and/or seroconversion rates that are at clinically relevalent levels (e.g., (i) neutralizing titers that are comparable or superior to those previously shown to prevent influenza symptoms, and/or (ii) neutralizing titers and/or seroconversion rates that are comparable or superior to those induced by a relevant comparator (e.g., a commercially approved influenza vaccine or an influenza RNA vaccine))). In some embodiments, a composition comprising a greater amount of RNA encoding influenza B antigens as compared to RNA encoding influenza A antigens produces an immune response against each of an influenza type B virus and influenza type A virus that is comparable or superior to that induced by a non-RNA influenza vaccine (e.g., an approved vaccine) and/or an RNA vaccine comprising equal amounts of RNA encoding influenza A antigens and RNA encoding influenza B antigens. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.1-0.2 mg/ml. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.1 mg/ml. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.12 mg/ml. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.14 mg/ml. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.16 mg/ml. In some embodiments, the concentration of RNA in a pharmaceutical RNA preparation is about 0.18 mg/ml. In some embodiments about 30 ug of RNA is administered by administering about 200 uL of RNA preparation. In some embodiments, the RNA in a pharmaceutical RNA preparation is diluted prior to administration (e.g., diluted to a concentration of about 0.05 mg/ml). In some embodiments, administration volumes are between about 200 µl and about 300 µl. In some embodiments, the RNA in a pharmaceutical RNA preparation is formulated in about 10 mM Tris buffer, and about 10% sucrose. In some embodiments, a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.1 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose. In some embodiments, a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.12 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose. In some embodiments, a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.14 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose. In some embodiments, a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.16 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose. In some embodiments, a pharmaceutical RNA preparation comprises RNA in a concentration of about 0.18 mg/ml, and is formulated in about 10 mM Tris buffer, and about 10% sucrose. Such a formulation can be diluted as needed prior to administration to administer different doses of RNA while keeping total injection volume relatively constant. For example, a dose of RNA of about 10 µg can be administered by diluting such a pharmaceutical RNA preparation by about 1:1 and administering about 200 µl of diluted pharmaceutical RNA preparation. In some embodiments, a vaccine is formulated in a vial (e.g., a glass vial). In some embodiments, a glass vial is sealed with a bromobutyl elastomeric stopper and an aluminum seal with flip-off plastic cap. In some embodiments, a composition comprises an RNA encoding an antigen (e.g., an HA protein) of an influenza virus that is recommended by a relevant health authority for inclusion in a seasonally-adapted vaccine (e.g., a cell-based, recombinant, or live attenuated virus). In some embodiments a composition comprises a plurality of RNAs, encoding antigens (e.g., HA proteins) of each influenza virus recommended by a relevant health authority for inclusion in a seasonally-adapted vaccine (e.g., a cell-based, recombinant, or live attenuated virus). In some embodiments, the influenza virus is an influenza A, influenza B, or influenza C virus. In some embodiments, the influenza A virus is an H1N1, H1N2, H2N2, H3N1, H3N2, H3N8, H5N1, H5N2, H5N3, H5N8, H5N9, H7N1, H7N2, H7N3, H7N4, H7N7, H7N9, H9N2, H10N7, or H10N8 virus. In some embodiments, the influenza A virus is an H1N1, H3N2, H5N1, or H5N8 virus. In some embodiments, the influenza A virus is an H1N1 virus (e.g., A/Wisconsin/588/2019 or A/Sydney/5/2021). In some embodiments the influenza A virus is an H3N2 virus. In some embodiments the H3N2 virus is A/Cambodia/e0826360/2020 or A/Darwin/6/2021. In some embodiments, the influenza B virus is of a B/Yamagata or B/Victoria lineage. In some embodiments, the B/Victoria lineage influenza virus is B/Washington/02/2019. In some embodiments, the B/Victoria lineage virus is B/Austria/1359417/2021. In some embodiments, the B/Yamagata lineage influenza virus is B/Phuket/3073/2013. In some embodiments, a composition described herein comprises a multivalent influenza vaccine. In some embodiments, a multivalent influenza vaccine comprises 2 to 50 RNA distinct molecules (e.g., 2 to 40, 2 to 30, or 2 to 20 RNA molecules), each of which, in some embodiments, may encode a different antigenic polypeptide (or a different version of a particular antigenic polypeptide) associated with influenza, e.g., as described in Arevalo, Claudia P., et al. "A multivalent nucleoside-modified mRNA vaccine against all known influenza virus subtypes." Science 378.6622 (2022): 899-904. In some embodiments, a composition described herein comprises a trivalent influenza vaccine. In some embodiments, a trivalent influenza vaccine comprises RNAs encoding an antigenic polypeptide associated with two type A viruses and one type B virus that are predicted to be prevalent in a relevant jurisdiction. In some embodiments, the trivalent composition includes a modRNA suspension for injection, e.g., 0.09 mg/mL, having a ratio of 1:1:4 of influenza HA A:A:B strain, respectively. In some embodiments, the trivalent composition comprises 0.015 mg/ml modRNA encoding HA from an influenza A strain, 0.015 mg/ml modRNA encoding HA from an influenza A strain, and 0.060 mg/ml of an influenza B strain. The composition may further comprise a cationic lipid, a pegylated lipid, phospholipid, and sterol, sucrose, tromethamine, and Tris-HCl. A trivalent modRNA HA (B/Austria, A/Wisconsin, A/Darwin) 0.6ug composition elicited an immune response in mice, wherein the composition included 0.2 ug of each of the 3 HA. The dose volume and immunization route was 50 ul/IM, administered on day 0 and 28. Bleed occurred on day 21 and 42. See Example 9. In some embodiments, a composition described herein comprises a tetravalent influenza vaccine. In some embodiments, a tetravalent influenza vaccine comprises RNAs encoding an antigenic polypeptide associated with two type A viruses and two type B viruses that are predicted to be prevalent in a relevant jurisdiction. In some embodiments, a composition described herein comprises an octavalent influenza vaccine. In some embodiments, an octavalent influenza vaccine comprises RNAs encoding two antigenic polypeptides associated with each of two type A viruses and two type B viruses that are predicted to be prevalent in a relevant jurisdiction (e.g., an HA protein and an NA protein associated with each virus, or immunogenic fragments thereof). In some embodiments, a composition disclosed herein comprises a tetravalent influenza vaccine comprising an RNA comprising a nucleotide sequence encoding an HA protein associated with an H1N1 virus (e.g., A/Wisconsin/588/2019), an RNA comprising a nucleotide sequence encoding an HA protein associated with an H3N2 virus (e.g., A/Cambodia/e0826360/2020), an RNA comprising a nucleotide sequence encoding an HA protein associated with a B/Victoria lineage influenza virus (e.g., B/Washington/02/2019), and an HA protein associated with a B/Yamagata lineage influenza virus (e.g., B/Phuket/3073/2013). In some embodiments, the tetravalent influenza RNA composition comprises 60 µg of total RNA (e.g., 5 µg of an RNA encoding an HA protein of an influenza A strain, 5 µg of an RNA encoding an HA protein of an influenza A strain, 25 µg of an RNA encoding an HA protein of an influenza B strain, and 25 µg of an RNA encoding an HA protein of an influenza B strain). In some embodiments, the tetravalent influenza RNA composition comprises 60 µg of total RNA (e.g., 5 µg of an RNA encoding an HA protein of an H1N1 influenza strain, 5 µg of an RNA encoding an HA protein of an H3N2 influenza strain, 25 µg of an RNA encoding an HA protein of a B/Victoria influenza lineage, and 25 µg of an RNA encoding an HA protein of a B/Yamagata influenza lineage). In some embodiments, the tetravalent influenza RNA composition described herein comprises 45 µg of total RNA (e.g., 11.25 µg of an RNA encoding an HA protein of a first influenza A strain, 11.25 µg of an RNA encoding an HA protein of a second influenza A strain, 11.25 µg of an RNA encoding an HA protein of an influenza B strain, and 11.25 µg of an RNA encoding an HA protein of a B/Yamagata influenza lineage). In some embodiments, the tetravalent influenza RNA composition described herein comprises 45 µg of total RNA (e.g., 11.25 µg of an RNA encoding an HA protein of an H1N1 influenza strain, 11.25 µg of an RNA encoding an HA protein of an H3N2 influenza strain, 11.25 µg of an RNA encoding an HA protein of a B/Victoria influenza lineage, and 11.25 µg of an RNA encoding an HA protein of a B/Yamagata influenza lineage). In some embodiments, the tetravalent influenza RNA composition comprises 30 µg of total RNA (e.g., 2.5 µg of an RNA encoding an HA protein of an H1N1 influenza strain, 2.5 µg of an RNA encoding an HA protein of an H3N2 influenza strain, 12.5 µg of an RNA encoding an HA protein of a B/Victoria influenza lineage, and 12.5 µg of an RNA encoding an HA protein of a B/Yamagata influenza lineage). In some embodiments, a composition comprises a tetravalent influenza vaccine comprises RNA encoding an antigenic polypeptide associated with two type A viruses and two type B viruses that are predicted to be prevalent in a relevant jurisdiction. In some embodiments, a tetravalent influenza vaccine comprises RNA encoding an antigenic polypeptide associated with an H1N1 influenza virus, RNA encoding an antigenic polypeptide associated with an H3N2 influenza virus, RNA encoding an antigenic polypeptide associated with a Victoria lineage influenza virus, and RNA encoding an antigenic polypeptide associated with a Yamagata lineage influenza virus. In some embodiments, the tetravalent influenza vaccine comprises RNA associated with influenza types that are predicted to be prevalent in a relevant jurisdiction (e.g., HA polypeptides associated with the H1N1, H3N2, B/Victoria, and B/Yamagata influenza viruses that are predicted to be prevalent in a relevant jurisdiction). In some embodiments, each of the RNAs in a composition disclosed herein encodes an antigenic polypeptide associated with an infectious agent that is predicted to be prevalent in a relevant jurisdiction. Such compositions can reduce the number of vaccinations needed. In some embodiments, a nucleic acid containing particle comprises two or more RNA molecules, each comprising a nucleotide sequence encoding an antigen (e.g., an HA protein) associated with a different influenza virus. In some embodiments, a nucleic acid containing particle comprises three or more RNA molecules, each comprising a nucleotide sequence encoding an antigen (e.g., an HA protein) associated with a different influenza virus. In some embodiments, a nucleic acid containing particle comprises four or more RNA molecules, each comprising a nucleotide sequence encoding an antigen (e.g., an HA protein) associated with a different influenza virus. In some embodiments, a nucleic acid containing particle comprises an RNA molecule comprising a nucleotide sequence encoding an antigenic polypeptide associated with an H1N1 influenza virus, an RNA molecule comprising a nucleotide sequence encoding an antigenic polypeptide associated with an H3N2 influenza virus, an RNA molecule comprising a nucleotide sequence encoding an antigenic polypeptide associated with a B/Victoria lineage influenza virus, and an RNA molecule comprising a nucleotide sequence encoding an antigenic polypeptide associated with a B/Yamagata influenza virus. In some embodiments, each RNA in a composition comprising a nucleotide sequence encoding an antigenic polypeptide associated with an influenza virus is formulated in the same nucleic acid containing particle. In some embodiments, each RNA in a composition comprising a nucleotide sequence encoding an antigenic polypeptide associated with an influenza virus is formulated in separate nucleic acid containing particles. In some embodiments, a nucleic acid containing particle (e.g., in some embodiments an LNP as described herein) comprising two or more RNA molecules, comprises each RNA molecule in the same amount (i.e., at a 1:1 ratio). In some embodiments, a nucleic acid containing particle (e.g., in some embodiments an LNP as described herein) comprising two or more RNA molecules, comprises a different amount of each RNA molecule. For example, in some embodiments, a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, where the first RNA molecule is present in an amount that is 0.01 to 100 times that of the second RNA molecule (e.g., wherein the amount of the first RNA molecule is 0.01 to 50, 0.01 to 4, 0.01 to 30, 0.01 to 25, 0.01 to 20, 0.01 to 15, 0.01 to 10, 0.01 to 9, 0.01 to 8, 0.01 to 7, 0.01 to 6, 0.01 to 5, 0.01 to 4, 0.01 to 3, 0.01 to 2, 0.01 to 1.5, 1 to 50, 1 to 4, 1 to 30, 1 to 25, 1 to 20, 1 to 15, 1 to 10, 1 to 9, 1 to 8, 1 to 7, 1 to 6, 1 to 5, 1 to 4, 1 to 3, 1 to 2, or 1 to 1.5 times higher than the second RNA molecule). In some embodiments, a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 1 to 10 times that of the second RNA molecule. In some embodiments, a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 1 to 5 times that of the second RNA molecule. In some embodiments, a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 1 to 3 times that of the second RNA molecule. In some embodiments, a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 2 times that of the second RNA molecule. In some embodiments, a nucleic acid containing particle comprises a first RNA molecule and a second RNA molecule, wherein the concentration of the first RNA molecule is 3 times that of the second RNA molecule. In some embodiments, a nucleic acid containing particle (e.g., in some embodiments an LNP as described herein) comprising three RNA molecules, comprises each RNA molecule in the same amount (i.e., at a 1:1:1 ratio). In some embodiments, a nucleic acid containing particle (e.g., in some embodiments an LNP as described herein) comprising three RNA molecules, comprises a different amount of each RNA molecule. For example, in some embodiments, the ratio of first RNA molecule: second RNA molecule: third RNA molecule is 1: 0.01-100: 0.01-100 (e.g., 1: 0.01-50: 0.01-50; 1: 0.01-40: 0.01-40; 1: 0.01-30: 0.01-25; 1: 0.01-25: 0.01-25; 1: 0.01-20: 0.01-20; 1: 0.01-15: 0.01-15; 1: 0.01-10: 0.01-9; 1: 0.01-9: 0.01-9; 1: 0.01-8: 0.01-8; 1: 0.01-7: 0.01-7; 1: 0.01-6: 0.01-6; 1: 0.01-5: 0.01-5; 1: 0.01-4: 0.01-4; 1: 0.01-3: 0.01-3; 1: 0.01-2: 0.01-2; or 1: 0.01-1.5: 0.01-1.5). In some embodiments, the ratio of first RNA molecule: second RNA molecule: third RNA molecule is 1:1:3. In some embodiments, the ratio of first RNA molecule: second RNA molecule: third RNA molecule is 1:3:3. The term "dose" as used herein refers in general to a "dose amount" which relates to the amount of RNA administered per administration, i.e., per dosing. In some embodiments, administration of an immunogenic composition or vaccine of the present disclosure may be performed by single administration or boosted by multiple administrations. In some embodiments, a regimen described herein includes at least one dose. In some embodiments, a regimen includes a first dose and at least one subsequent dose. In some embodiments, the first dose is the same amount as at least one subsequent dose. In some embodiments, the first dose is the same amount as all subsequent doses. In some embodiments, the first dose is a different amount as at least one subsequent dose. In some embodiments, the first dose is a different amount than all subsequent doses. In some embodiments, a regimen comprises two doses. In some embodiments, a provided regimen consists of two doses. In some em bodiments, a regimen comprises three doses. In one embodiment, the disclosure envisions administration of a single dose. In one embodiment, the disclosure envisions administration of a priming dose followed by one or more booster doses. The booster dose or the first booster dose may be administered 7 to 28 days or 14 to 24 days following administration of the priming dose. In some embodiments, a first booster dose may be administered 1 week to 3 months (e.g., 1 week, 2 weeks, 3 weeks, 4 weeks, 5 weeks, 6 weeks, 7 weeks, 8 weeks, 9 weeks, 10 weeks, 11 weeks, 12 weeks) following administration of a priming dose. In some embodiments, a subsequent booster dose may be administered at least 1 week or longer, including, e.g., at least 2 weeks, at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, at least 7 weeks, at least 8 weeks, at least 9 weeks, at least 10 weeks, at least 11 weeks, at least 12 weeks, or longer, following a preceding booster dose. In some embodiments, subsequent booster doses may be administered about 5- 9 weeks or 6-8 weeks apart. In some embodiments, at least one subsequent booster dose (e.g., after a first booster dose) may be administered at least 3 months or longer, including, e.g., at least 4 months, at least 5 months, at least 6 months, at least 7 months, at least 8 months, at least 9 months, at least 10 months, or longer, following a preceding dose. In some embodiments, a dose comprises a total amount of RNA of 0.1 µg to 300 µg, 0.5 µg to 200 µg, or 1 µg to 100 µg, such as about 1 µg, about 2 µg, about 3 µg, about 10 µg, about 15 µg, about 20 µg, about 25 µg, about 30 µg, about 35 µg, about 40 µg, about 45 µg, about 50 µg, about 55 µg, about 60 µg, about 65 µg, about 70 µg, about 75 µg, about 80 µg, about 85 µg, about 90 µg, about 95 µg, or about 100 µg. In some embodiments, a dose comprises a total amount of RNA (e.g., modRNA) of up to about 100 µg. In some embodiments, a dose comprises 0.1 µg to 100 µg of one or more first RNAs and 0.1 µg to 100 µg of one or more second RNAs, wherein the one or more first RNAs each comprise a nucleotide sequence encoding an antigenic polypeptide associated with a first infectious agent (e.g., a coronavirus), and the one or more second RNAs each comprise a nucleotide sequence encoding an antigenic polypeptide associated with a second infectious agent (e.g., influenza). In some embodiments, a dose comprises 3 to 60 µg of one or more first RNAs and 3 to 90 µg of one or more second RNAs. In some embodiments, a dose comprises 3 to 60 µg of one or more first RNAs and 3 to 90 µg of one or more second RNAs, wherein the dose comprises up to 100 µg of RNA total. In some embodiments, a dose comprises 3 to 30 µg of one or more first RNAs and 3 to 60 µg of one or more second RNAs, wherein the dose comprises up to 100 µg of RNA total. In some embodiments, a dose comprises 3 µg of one or more first RNAs and 3 µg of one or more second RNAs. In some embodiments, a dose comprises 3 µg of one or more first RNAs and 6 µg of one or more second RNAs. In some embodiments, a dose comprises 10 µg of one or more first RNAs and 10 µg of one or more second RNAs. In some embodiments, a dose comprises 10 µg of one or more first RNAs and 20 µg of one or more second RNAs. In some embodiments, a dose comprises 30 µg of one or more first RNAs and 30 µg of one or more second RNAs. In some embodiments, a dose comprises 30 µg of one or more first RNAs and 60 µg of one or more second RNAs. In some embodiments, a dose comprises 60 µg of one or more first RNAs and 30 µg of one or more second RNAs. In some embodiments, a subsequent dose given to an individual (e.g., as part of a primary regimen or booster regimen) can have the same amount of RNA as previously given to the individual. In some embodiments, a subsequent dose given to an individual (e.g., as part of a primary regimen or booster regimen) can differ in the amount of RNA, as compared to the amount previously given to the individual. For example, in some embodiments, a subsequent dose can be higher or lower than the prior dose, for example, based on consideration of various factors, including, e.g., immunogenicity and/or reactogenicity induced by the prior dose, prevalence of the disease, etc. In some embodiments, a subsequent dose can be higher than a prior dose by at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or higher. In some embodiments, a subsequent dose can be higher than a prior dose by at least 1.5-fold, at least 2-fold, at least 2.5 fold, at least 3-fold, or higher. In some embodiments, a subsequent dose can be higher than a prior dose by at least 30%, at least 40%, at least 50%, at least 60%, at least 70%, at least 80%, at least 90%, or higher. In some embodiments, a subsequent dose can be lower than a prior dose by at least 10%, at least 20%, at least 30%, at least 40%, at least 50%, at least 60%, at least 70% or lower. In some embodiments, an amount the RNA described herein from 0.1 µg to 300 µg, 0.5 µg to 200 µg, or 1 µg to 100 µg, such as about 1 µg, about 2 µg, about 3 µg, about 10 µg, about 15 µg, about 20 µg, about 25 µg, about 30 µg, about 35 µg, about 40 µg, about 45 µg, about 50 µg, about 55 µg, about 60 µg, about 70 µg, about 80 µg, about 90 µg, or about 100 µg may be administered per dose (e.g., in a given dose). In some embodiments, an amount of the RNA described herein of 60 µg or lower, 55 µg or lower, 50 µg or lower, 45 µg or lower, 40 µg or lower, 35 µg or lower, 30 µg or lower, 25 µg or lower, 20 µg or lower, 15 µg or lower, 10 µg or lower, 5 µg or lower, 3 µg or lower, 2.5 µg or lower, or 1 µg or lower may be administered per dose (e.g., in a given dose). In some embodiments, an amount of the RNA described herein of at least 0.25 µg, at least 0.5 µg, at least 1 µg, at least 2 µg, at least 3 µg, at least 4 µg, at least 5 µg, at least 10 µg, at least 15 µg, at least 20 µg, at least 25 µg, at least 30 µg, at least 40 µg, at least 50 µg, or at least 60 µg may be administered per dose (e.g., in a given dose). In some embodiments, an amount of the RNA described herein of at least 3 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 10 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 15 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 20 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 25 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 30 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 50 ug may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of at least 60 ug may be administered in at least one of given doses. In some embodiments, combinations of aforementioned amounts may be administered in a regimen comprising two or more doses (e.g., a prior dose and a subsequent dose can be of different amounts as described herein). In some embodiments, combinations of aforementioned amounts may be administered in a primary regimen and a booster regimen (e.g., different doses can be given in a primary regimen and a booster regimen). In some embodiments, an amount of an RNA described herein of 0.25 µg to 60 µg, 0.5 µg to 55 µg, 1 µg to 50 µg, 5 µg to 40 µg, or 10 µg to 30 µg may be administered per dose. In some embodiments, an amount of the RNA described herein of 3 µg to 30 µg may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of 3 µg to 20 µg may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of 3 µg to 15 µg may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of 3 µg to 10 µg may be administered in at least one of given doses. In some embodiments, an amount of the RNA described herein of 10 µg to 30 µg may be administered in at least one of given doses. In some embodiments, a regimen administered to a subject may comprise a plurality of doses (e.g., at least two doses, at least three doses, or more). In some embodiments, a regimen administered to a subject may comprise a first dose and a second dose, which are given at least 2 weeks apart, at least 3 weeks apart, at least 4 weeks apart, or more. In some embodiments, such doses may be at least 1 month, at least 2 months, at least 3 months, at least 4 months, at least 5 months, at least 6 months, at least 7 months, at least 8 months, at least 9 months, at least 10 months, at least 11 months, at least 12 months, or more apart. In some embodiments, doses may be administered days apart, such as 1, 2, 3, 4, 5, 6, 7, 8, 9 ,10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60 or more days apart. In some embodiments, doses may be administered about 1 to about 3 weeks apart, or about 1 to about 4 weeks apart, or about 1 to about 5 weeks apart, or about 1 to about 6 weeks apart, or about 1 to more than 6 weeks apart. In some embodiments, doses may be separated by a period of about 7 to about 60 days, such as for example about 14 to about 48 days, etc. In some embodiments, a minimum number of days between doses may be about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21 or more. In some embodiments, a maximum number of days between doses may be about 60, 59, 58, 57, 56, 55, 54, 53, 52, 51, 50, 49, 48, 47, 46, 45, 44, 43, 42, 41, 40, 39, 38, 37, 36, 35, 34, 33, 32, 31, 30, 29, 28, 27, 26, 25, 24, 23, 22, 21, or fewer. In some embodiments, doses may be about 21 to about 28 days apart. In some embodiments, doses may be about 19 to about 42 days apart. In some embodiments, doses may be about 7 to about 28 days apart. In some embodiments, doses may be about 14 to about 24 days. In some embodiments, doses may be about 21 to about 42 days. In some embodiments, a vaccination regimen comprises a first dose and a second dose. In some embodiments, a first dose and a second dose are administered by at least 21 days apart. In some embodiments, a first dose and a second dose are administered by at least 28 days apart. In some embodiments, a vaccination regimen comprises a first dose and a second dose, wherein the amount of RNA administered in the first dose is the same as the amount of RNA administered in the second dose. In some embodiments, a vaccination regimen comprises a first dose and a second dose wherein the amount of RNA administered in the first dose differs from that administered in the second dose. In some embodiments, a vaccination regimen comprises a first dose and a second dose, wherein the amount of RNA administered in the first dose is less than that administered in the second dose. In some embodiments, the amount of RNA administered in the first dose is 10%- 90% of the second dose. In some embodiments, the amount of RNA administered in the first dose is 10%-50% of the second dose. In some embodiments, the amount of RNA administered in the first dose is 10%-20% of the second dose. In some embodiments, the first dose and the second dose are administered at least 2 weeks apart, including, at least 3 weeks apart, at least 4 weeks apart, at least 5 weeks apart, at least 6 weeks apart or longer. In some embodiments, the first dose and the second dose are administered at least 3 weeks apart. In some embodiments, a first dose comprises less than about 30 ug of RNA and a second dose comprises at least about 30 ug of RNA. In some embodiments, a first dose comprises about 1 to less than about 30 ug of RNA (e.g., about 0.1, about 1, about 3, about 5, about 10, about 15, about 20, about 25, or less than about 30 ug of RNA) and a second dose comprises about 30 to about 100 ug of RNA (e.g., about 30, about 40, about 50, or about 60 ug of RNA). In some embodiments, a first dose comprises about 1 to about 20 ug of RNA, about 1 to about 10 ug of RNA, or about 1 to about 5 ug of RNA and a second dose comprises about 30 to about 60 ug of RNA. In some embodiments, a first dose comprises about 1 to about 10 ug of RNA (e.g., about 1, about 2, about 3, about 4, about 5, about 6, about 7, about 8, about 9, or about 10 ug of RNA) and a second dose comprises about 30 to about 60 ug of RNA (e.g., about 30, about 35, about 40, about 45, about 50, about 55, or about 60 ug of RNA). In some embodiments, a first dose comprises about 1 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises about 5 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises about 10 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises about 15 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises about 1 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 5 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 6 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 10 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 15 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 20 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 25 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 60 ug of RNA. In some embodiments, a first dose comprises less than about 10 ug of RNA and a second dose comprises at least about 10 ug of RNA. In some embodiments, a first dose comprises about 0.1 to less than about 10 ug of RNA (e.g., about 0.1, about 0.5, about 1, about 2, about 3, about 4, about 5, about 6, about 7, about 8, or less than about 10 ug of RNA) and a second dose comprises about 10 to about 30 ug of RNA (e.g., about 10, about 15, about 20, about 25, or about 30 ug of RNA). In some embodiments, a first dose comprises about 0.1 to about 10 ug of RNA, about 1 to about 5 ug of RNA, or about 0.1 to about 3 ug of RNA and a second dose comprises about 10 to about 30 ug of RNA. In some embodiments, a first dose comprises about 0.1 to about 5 ug of RNA (e.g., about 0.1, about 0.5, about 1, about 2, about 3, about 4, about 5ug of RNA) and a second dose comprises about 10 to about 20 ug of RNA (e.g., about 10, about 12, about 14, about 16, about 18, about 20ug of RNA). In some embodiments, a first dose comprises about 0.1 ug of RNA and a second dose comprises about 10 ug of RNA. In some embodiments, a first dose comprises about 0.3 ug of RNA and a second dose comprises about 10 ug of RNA. In some embodiments, a first dose comprises about 1 ug of RNA and a second dose comprises about 10 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 10 ug of RNA. In some embodiments, a first dose comprises less than about 3 ug of RNA and a second dose comprises at least about 3 ug of RNA. In some embodiments, a first dose comprises about 0.1 to less than about 3 ug of RNA (e.g., about 0.1, about 0.2, about 0.3, about 0.5, about 0.6, about 0.7, about 0.8, about 0.9, about 1.0, about 1.5, about 2.0, or about 2.5 ug of RNA) and a second dose comprises about 3 to about 10 ug of RNA (e.g., about 3, about 4, about 5, about 6, or about 7, about 8, about 9, or about 10 ug of RNA). In some embodiments, a first dose comprises about 0.1 to about 3 ug of RNA, about 0.1 to about 1 ug of RNA, or about 0.1 to about 0.5 ug of RNA and a second dose comprises about 3 to about 10 ug of RNA. In some embodiments, a first dose comprises about 0.1 to about 1.0 ug of RNA (e.g., about 0.1, about 0.2, about 0.3, about 0.4, about 0.5, about 0.6, about 0.7, about 0.8, about 0.9, or about 1.0 ug of RNA) and a second dose comprises about 1 to about 3 ug of RNA (e.g., about 1.0, about 1.5, about 2.0, about 2.5, or about 3.0 ug of RNA). In some embodiments, a first dose comprises about 0.1 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 0.3 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 0.5 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 1 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a vaccination regimen comprises a first dose and a second dose, wherein the amount of RNA administered in the first dose is greater than that administered in the second dose. In some embodiments, the amount of RNA administered in the second dose is 10%-90% of the first dose. In some embodiments, the amount of RNA administered in the second dose is 10%-50% of the first dose. In some embodiments, the amount of RNA administered in the second dose is 10%-20% of the first dose. In some embodiments, the first dose and the second dose are administered at least 2 weeks apart, including, at least 3 weeks apart, at least 4 weeks apart, at least 5 weeks apart, at least 6 weeks apart or longer. In some embodiments, the first dose and the second dose are administered at least 3 weeks apart In some embodiments, a first dose comprises at least about 30 ug of RNA and a second dose comprises less than about 30 ug of RNA. In some embodiments, a first dose comprises about 30 to about 100 ug of RNA (e.g., about 30, about 40, about 50, or about 60 ug of RNA) and a second dose comprises about 1 to about 30 ug of RNA (e.g., about 0.1, about 1, about 3, about 5, about 10, about 15, about 20, about 25, or about 30 ug of RNA). In some embodiments, a second dose comprises about 1 to about 20 ug of RNA, about 1 to about 10 ug of RNA, or about 1 to 5 ug of RNA. In some embodiments, a first dose comprises about 30 to about 60 ug of RNA and a second dose comprises about 1 to about 20 ug of RNA, about 1 to about 10 ug of RNA, or about 0.1 to about 3 ug of RNA. In some embodiments, a first dose comprises about 30 to about 60 ug of RNA (e.g., about 30, about 35, about 40, about 45, about 50, about 55, or about 60 ug of RNA) and a second dose comprises about 1 to about 10 ug of RNA (e.g., about 1, about 2, about 3, about 4, about 5, about 6, about 7, about 8, about 9, or about 10 ug of RNA). In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 1 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 5 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 10 ug of RNA. In some embodiments, a first dose comprises about 30 ug of RNA and a second dose comprises about 15 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 1 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 5 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 6 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 10 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 15 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 20 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 25 ug of RNA. In some embodiments, a first dose comprises about 60 ug of RNA and a second dose comprises about 30 ug of RNA. In some embodiments, a first dose comprises at least about 10 ug of RNA and a second dose comprises less than about 10 ug of RNA. In some embodiments, a first dose comprises about 10 to about 30 ug of RNA (e.g., about 10, about 15, about 20, about 25, or about 30 ug of RNA) and a second dose comprises about 0.1 to less than about 10 ug of RNA (e.g., about 0.1, about 0.5, about 1, about 2, about 3, about 4, about 5, about 6, about 7, about 8, or less than about 10 ug of RNA). In some embodiments, a first dose comprises about 10 to about 30 ug of RNA, or about 0.1 to about 3 ug of RNA and a second dose comprises about 1 to about 10 ug of RNA, or about 1 to about 5 ug of RNA. In some embodiments, a first dose comprises about 10 to about 20 ug of RNA (e.g., about 10, about 12, about 14, about 16, about 18, about 20 ug of RNA) and a second dose comprises about 0.1 to about 5 ug of RNA (e.g., about 0.1, about 0.5, about 1, about 2, about 3, about 4, or about 5 ug of RNA). In some embodiments, a first dose comprises about 10 ug of RNA and a second dose comprises about 0.1 ug of RNA. In some embodiments, a first dose comprises about 10 ug of RNA and a second dose comprises about 0.3 ug of RNA. In some embodiments, a first dose comprises about 10 ug of RNA and a second dose comprises about 1 ug of RNA. In some embodiments, a first dose comprises about 10 ug of RNA and a second dose comprises about 3 ug of RNA. In some embodiments, a first dose comprises at least about 3 ug of RNA and a second dose comprises less than about 3 ug of RNA. In some embodiments, a first dose comprises about 3 to about 10 ug of RNA (e.g., about 3, about 4, about 5, about 6, or about 7, about 8, about 9, or about 10 ug of RNA) and a second dose comprises 0.1 to less than about 3 ug of RNA (e.g., about 0.1, about 0.2, about 0.3, about 0.5, about 0.6, about 0.7, about 0.8, about 0.9, about 1.0, about 1.5 about 2.0, or about 2.5 ug of RNA). In some embodiments, a first dose comprises about 3 to about 10 ug of RNA and a second dose comprises about 0.1 to about 3 ug of RNA, about 0.1 to about 1 ug of RNA, or about 0.1 to about 0.5 ug of RNA. In some embodiments, a first dose comprises about 1 to about 3 ug of RNA (e.g., about 1, about 1.5, about 2.0, about 2.5, or about 3.0 ug of RNA) and a second dose comprises about 0.1 to 0.3 ug of RNA (e.g., about 0.1, about 0.2, about 0.3, about 0.4, about 0.5, about 0.6, about 0.7, about 0.8, about 0.9, or about 1.0 ug of RNA). In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 0.1 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 0.3 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 0.6 ug of RNA. In some embodiments, a first dose comprises about 3 ug of RNA and a second dose comprises about 1 ug of RNA. In some embodiments, a vaccination regimen comprises at least two doses, including, e.g., at least three doses, at least four doses or more. In some embodiments, a vaccination regimen comprises three doses. In some embodiments, the time interval between the first dose and the second dose can be the same as the time interval between the second dose and the third dose. In some embodiments, the time interval between the first dose and the second dose can be longer than the time interval between the second dose and the third dose, e.g., by days or weeks (including, e.g., at least 3 days, at least 4 days, at least 5 days, at least 6 days, at least 1 week, at least 2 weeks, at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer). In some embodiments, the time interval between the first dose and the second dose can be shorter than the time interval between the second dose and the third dose, e.g., by days or weeks (including, e.g., at least 3 days, at least 4 days, at least 5 days, at least 6 days, at least 1 week, at least 2 weeks, at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer). In some embodiments, the time interval between the first dose and the second dose can be shorter than the time interval between the second dose and the third dose, e.g., by at least 1 month (including, e.g., at least 2 months, at least 3 months, at least 4 months, at least 5 months, at least 6 months, at least 7 months, at least 8 months, at least 9 months, at least 10 months, at least 11 months, at least 12 months, or longer). In some embodiments, a last dose of a primary regimen and a first dose of a booster regimen are given at least 2 months, at least 3 months, at least 4 months, at least 5 months, at least 6 months, at least 7 months, at least 8 months, at least 9 months, at least 10 months, at least 11 months, at least 12 months, or more apart. In some embodiments, a primary regimen may comprises two doses. In some embodiments, a primary regimen may comprises three doses. In some embodiments, a first dose and a second dose (and/or other subsequent dose) may be administered by intramuscular injection. In some embodiments, a first dose and a second dose (and/or other subsequent dose) may be administered in the deltoid muscle. In some embodiments, a first dose and a second dose (and/or other subsequent dose) may be administered in the same arm. In some embodiments, an mRNA composition described herein is administered (e.g., by intramuscular injection) as a series of two doses (e.g., 0.3 mL each) 21 days apart. In some embodiments, an mRNA composition described herein is administered (e.g., by intramuscular injection) as a series of two doses (e.g., 0.2 mL each) 21 days apart. In some embodiments, an mRNA composition described herein is administered (e.g., by intramuscular injection) as a series of three doses (e.g., 0.3 mL or lower including, e.g., 0.2 mL), wherein doses are given at least 3 weeks apart. In some embodiments, the first and second doses may be administered 3 weeks apart, while the second and third doses may be administered at a longer time interval than that between the first and the second doses, e.g., at least 4 weeks apart or longer (including, at least 5 weeks, at least 6 weeks, at least 7 weeks, at least 8 weeks, at least 9 weeks, or longer). In some embodiments, each dose is about 60 ug. In some embodiments, each dose is about 50 ug. In some embodiments, each dose is about 30 ug. In some embodiments, each dose is about 25 ug. In some embodiments, each dose is about 20 ug. In some embodiments, each dose is about 15 ug. In some embodiments, each dose is about 10 ug. In some embodiments, each dose is about 3 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 60 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 50 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 30 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 25 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 20 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 15 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 10 ug. In some embodiments, at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 3 ug. In one embodiment, an amount of the RNA described herein of about 60 µg is administered per dose. In one embodiment, an amount of the RNA described herein of about 50 µg is administered per dose. In one embodiment, an amount of the RNA described herein of about 30 µg is administered per dose. In one embodiment, an amount of the RNA described herein of about 25 µg is administered per dose. In one embodiment, an amount of the RNA described herein of about 20 µg is administered per dose. In one embodiment, an amount of the RNA described herein of about 15 µg is administered per dose. In one embodiment, an amount of the RNA described herein of about 10 µg is administered per dose. In one embodiment, an amount of the RNA described herein of about 5 µg is administered per dose. In one embodiment, an amount of the RNA described herein of about 3 µg is administered per dose. In one embodiment, at least two of such doses are administered. For example, a second dose may be administered about 21 days following administration of the first dose. In some embodiments, the efficacy of the RNA vaccine described herein (e.g., administered in two doses, wherein a second dose may be administered about 21 days following administration of the first dose, and administered, for example, in an amount of about 30 µg per dose) is at least 70%, at least 80%, at least 90, or at least 95% beginning 7 days after administration of the second dose (e.g., beginning 28 days after administration of the first dose if a second dose is administered 21 days following administration of the first dose). In some embodiments, such efficacy is observed in populations of age of at least 50, at least 55, at least 60, at least 65, at least 70, or older. In some embodiments, the efficacy of the RNA vaccine described herein (e.g., administered in two doses, wherein a second dose may be administered about 21 days following administration of the first dose, and administered, for example, in an amount of about 30 µg per dose) beginning 7 days after administration of the second dose (e.g., beginning 28 days after administration of the first dose if a second dose is administered 21 days following administration of the first dose) in populations of age of at least 65, such as 65 to 80, 65 to 75, or 65 to 70, is at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, or at least 95%. Such efficacy may be observed over time periods of up to 1 month, 2 months, 3 months, 6 months or even longer. In one embodiment, vaccine efficacy is defined as the percent reduction in the number of subjects with evidence of infection (vaccinated subjects vs. non-vaccinated subjects). In one embodiment, methods and agents described herein are administered to a paediatric population. In various embodiments, the paediatric population comprises or consists of subjects under 18 years, e.g., 5 to less than 18 years of age, 12 to less than 18 years of age, 16 to less than 18 years of age, 12 to less than 16 years of age, 5 to less than 12 years of age, or 6 months to less than 12 years of age. In various embodiments, the paediatric population comprises or consists of subjects under 5 years, e.g., 2 to less than 5 years of age, 12 to less than 24 months of age, 7 to less than 12 months of age, or less than 6 months of age. In some such embodiments, an mRNA composition described herein is administered to subjects of less than 2 years old, for example, 6 months to less than 2 years old. In some such embodiments, an mRNA composition described herein is administered to subjects of less than 6 months old, for example, 1 month to less than 4 months old. In some embodiments, a dosing regimen (e.g., doses and/or dosing schedule) for a paediatric population may vary for different age groups. For example, in some embodiments, a subject 6 months through 4 years of age may be administered according to a primary regimen comprising at least three doses, in which the initial two doses are administered at least 3 weeks (including, e.g., at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer) apart followed by a third dose administered at least 8 weeks (including, e.g., at least 9 weeks, at least 10 weeks, at least 11 weeks, at least 12 weeks, or longer) after the second dose. In some such embodiments, at least one dose administered is 3 ug RNA described herein. In some embodiments, a subject 5 years of age and older may be administered according to a primary regimen comprising at least two doses, in which the two doses are administered at least 3 weeks (including, e.g., at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer) apart. In some such embodiments, at least one dose administered is 10 ug RNA described herein. In some embodiments, a subject 5 years of age and older who are immunocompromised (e.g., in some embodiments subjects who have undergone solid organ transplantation, or who are diagnosed with conditions that are considered to have an equivalent of immunocompromise) may be administered according to a primary regimen comprising at least three doses, in which the initial two doses are administered at least 3 weeks (including, e.g., at least 3 weeks, at least 4 weeks, at least 5 weeks, at least 6 weeks, or longer) apart, followed by a third dose administered at least 4 weeks (including, e.g., at least 5 weeks, at least 6 weeks, at least 7 weeks, at least 8 weeks, at least 9 weeks, at least 10 weeks, at least 11 weeks, at least 12 weeks, or longer) after the second dose. In some embodiments, an mRNA composition described herein is administered to subjects of age 12 or older and each dose is about 30 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 12 or older (including, e.g., age 18 or older) and each dose is higher than 30 ug, including, e.g., 35 ug, 40 ug, 45 ug, 50 ug, 55 ug, 60 ug, 65 ug , 70 ug, or higher. In some such embodiments, an mRNA composition described herein is administered to subjects of age 12 or older and each dose is about 60 ug. In some such embodiments, an mRNA composition described herein is administered to subjects of age 12 or older and each dose is about 50 ug. In one embodiment, the paediatric population comprises or consists of subjects 12 to less than 18 years of age including subjects 16 to less than 18 years of age and/or subjects 12 to less than 16 years of age. In this embodiment, treatments may comprise 2 vaccinations 21 days apart, wherein, in one embodiment, the vaccine is administered in an amount of 30 µg RNA per dose, e.g., by intramuscular administration. In some embodiments, higher doses are administered to older pediatric patients and adults, e.g., to patients 12 years or older, compared to younger children or infants, e.g.2 to less than 5 years old, 6 months to less than 2 years old, or less than 6 months old. In some embodiments, higher doses are administered to children who are 2 to less than 5 years old, as compared to toddlers and/or infants, e.g., who are 6 months to less than 2 years old, or less than 6 months old. In one embodiment, the paediatric population comprises or consists of subjects 5 to less than 18 years of age including subjects 12 to less than 18 years of age and/or subjects 5 to less than 12 years of age. In this embodiment, treatments may comprise 2 vaccinations 21 days apart, wherein, in various embodiments, the vaccine is administered in an amount of 10 µg, 20µg, or 30 µg RNA per dose, e.g., by intramuscular administration. In some such embodiments, an mRNA composition described herein is administered to subjects of age 5 to 11 and each dose is about 10 ug. In one embodiment, the paediatric population comprises or consists of subjects less than 5 years of age including subjects 2 to less than 5 years of age, subjects 12 to less than 24 months of age, subjects 7 to less than 12 months of age, subjects 6 to less than 12 months of age and/or subjects less than 6 months of age. In this embodiment, treatments may comprise 2 vaccinations, e.g., 21 to 42 days apart, e.g., 21 days apart, wherein, in various embodiments, the vaccine is administered in an amount of 3 µg, 10 µg, 20 µg, or 30 µg RNA per dose, e.g., by intramuscular administration. In some such embodiments, an mRNA composition described herein is administered to subjects of age 2 to less than 5 and each dose is about 3 ug. In some such embodiments, an mRNA composition described herein is administered to subjects of about 6 months to less than about 5 years and each dose is about 3 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 12 or older and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 60 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 12 or older and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 30 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 12 or older and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 15 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 5 to less than 12 years of age and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 10 ug. In some embodiments, an mRNA composition described herein is administered to subjects of age 2 to less than 5 and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 3 ug. In some embodiments, an mRNA composition described herein is administered to subjects of 6 months to less than age 2 and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 3 ug or lower, including, e.g., 2 ug, 1 ug, or lower). In some embodiments, an mRNA composition described herein is administered to infants of less than 6 months and at least one dose given in a vaccination regimen (e.g., a primary vaccination regimen and/or a booster vaccination regimen) is about 3 ug or lower, including, e.g., 2 ug, 1 ug, 0.5 ug, or lower). In some embodiments, a dose administered to subjects in need thereof may comprise administration of a single mRNA composition described herein. In some embodiments, a dose administered to subjects in need thereof may comprise administration of at least two or more (including, e.g., at least three or more) different drug products/formulations. For example, in some embodiments, at least two or more different drug products/formulations may comprise at least two different mRNA compositions described herein (e.g., in some embodiments each comprising a different RNA construct). In some embodiments, a subject is administered two or more RNAs (e.g., as part of either a primary regimen or a booster regimen), wherein the two or more RNAs are administered on the same day or same visit. In some embodiments, the two or more RNAs are administered in separate compositions, e.g., by administering each RNA to a separate part of the subject (e.g., by intramuscular administration to different arms of the subject or to different sites of the same arm of the subject). In some embodiments, the two or more RNAs are mixed prior to administration (e.g., mixed immediately prior to administration, e.g., by the administering practitioner). In some embodiments, the two or more RNAs are formulated together (e.g., by (a) mixing separate populations of LNPs, each population comprising a different RNA; or (b) by mixing two or more RNAs prior to LNP formulation, so that each LNP comprises two or more RNAs). In some embodiments, a subject is administered or a composition comprises one or more first RNAs and one or more second RNAs, each in the same amount (i.e., at a 1:1 ratio). In some embodiments, a subject is administered or a composition comprises one or more first RNAs and one or more second RNAs, each in a different amount. For example, in some embodiments, a subject is administered or a composition comprises one or more first RNAs in an amount that is 0.01 to 100 times that of one or more second RNAs (e.g., wherein the amount of the one or more first RNAs is 0.01 to 50, 0.01 to 4, 0.01 to 30, 0.01 to 25, 0.01 to 20, 0.01 to 15, 0.01 to 10, 0.01 to 9, 0.01 to 8, 0.01 to 7, 0.01 to 6, 0.01 to 5, 0.01 to 4, 0.01 to 3, 0.01 to 2, 0.01 to 1.5, 1 to 50, 1 to 4, 1 to 30, 1 to 25, 1 to 20, 1 to 15, 1 to 10, 1 to 9, 1 to 8, 1 to 7, 1 to 6, 1 to 5, 1 to 4, 1 to 3, 1 to 2, or 1 to 1.5 times that of the one or more second RNAs). In some embodiments, a subject is administered or a composition comprises one or more first RNAs and one or more second RNAs, wherein the concentration of the one or more first RNAs is 1 to 10 times that of the one or more second RNAs. In some embodiments, a subject is administered or a composition comprises one or more first RNAs and one or more second RNAs, wherein the amount of the one or more first RNAs is 1 to 5 times that of the one or more second RNAs. In some embodiments, a subject is administered or a composition comprises one or more first RNAs and one or more second RNAs, wherein the concentration of the one or more first RNAs is 1 to 3 times that of the one or more second RNAs. In some embodiments, a subject is administered or a composition comprises one or more first RNAs and one or more second RNAs, wherein the amount of the one or more first RNAs is 2 times that of the one or more second RNAs. In some embodiments, a subject is administered or a composition comprises one or more first RNAs and one or more second RNAs, wherein the concentration of the one or more first RNAs is 3 times that of the one or more second RNAs. In some embodiments, a subject is administered or a composition comprises two first RNAs, each encoding an antigen derived from an influenza strain or variant, wherein the amount of each RNA is not the same. For example, in some embodiments, the ratio of the two first RNAs is 1:0.01-100 (e.g., 1: 0.01-50; 1: 0.01-40; 1: 0.01-30; 1: 0.01-25; 1: 0.01-20; 1: 0.01- 15; 1: 0.01-10; 1: 0.01-9; 1: 0.01-8; 1: 0.01-7; 1: 0.01-6; 1: 0.01-5; 1: 0.01-4; 1: 0.01-3; 1: 0.01-2; 1: 0.01-1.5, 1: 0.1-10, 1: 0.1-5, 1: 0.1-3, 1: 2-10, 1: 2-5, or 1: 2-3). In some embodiments, a subject is administered or a composition comprises two first RNAs at a ratio of 1:3. In some embodiments, a subject is administered or a composition comprises two first RNAs at a ratio of 1:2. For example, in some embodiments, the ratio of the three first RNAs is 1: 0.01-100: 0.01- 100 (e.g., 1: 0.01-50: 0.01-50; 1: 0.01-40: 0.01-40; 1: 0.01-30: 0.01-30; 1: 0.01-25: 0.01-25; 1: 0.01-20: 0.01-20; 1: 0.01-15: 0.01-15; 1: 0.01-10: 0.01-10; 1: 0.01-9: 0.01-9; 1: 0.01-8: 0.01-8; 1: 0.01-7: 0.01-7; 1: 0.01-6: 0.01-6; 1: 0.01-5: 0.01-5; 1: 0.01-4: 0.01-4; 1: 0.01-3: 0.01-3; 1: 0.01-2: 0.01-2; 1: 0.01-1.5: 0.01-1.5; 1: 0.1-10: 0.1-10, 1: 0.1-5: 0.1-5, 1: 0.1-3: 0.1-3, 1: 2-10: 2- 10, 1: 2-5: 2-5, or 1: 2-3: 2-3). In some embodiments, a subject is administered or a composition comprises three first RNAs at a ratio of 1:1:3. In some embodiments, a subject is administered or a composition comprises three first RNAs at a ratio of 1:3:3. In some embodiments, a subject is administered or a composition comprises two or more second RNAs, one or more of which encode an HA protein of a Type A influenza virus, and one or more of which encode an HA protein of a Type B influenza virus. In some embodiments, the one or more second RNAs that encode an HA protein of a Type A influenza virus and the one or more second RNAs that encode an HA protein of a Type B influenza virus are present or are administered in the same amount (i.e., at a ratio of 1:1). In some embodiments, the one more second RNAs that encode an HA protein of a Type A influenza virus and the one or more second RNAs that encode an HA protein of a Type B influenza virus are administered in different amounts (e.g., in a ratio of between 1:10 and 10:1, or in a ratio of 1:2, 1:3, 1:4, 1:5, 2:1, 3:1, 4:1, or 5:1 (total RNA encoding an A antigen:total RNA encoding a B antigen). In some embodiments, a subject is administered or a composition comprises two second RNAs, each encoding an HA protein of a different influenza virus type (e.g., a second RNA encoding an HA protein of a Type A influenza virus and a second RNA encoding an HA protein of a Type B influenza virus). In some embodiments, the second RNAs are administered or are present in the same amount (i.e., at a 1:1 ratio). In some embodiments, the second RNAs are administered or are present in different amounts (e.g., in a ratio of between 1:10 and 10:1, or in a ratio of 1:2, 1:3, 1:4, 1:5, 2:1, 3:1, 4:1, or 5:1 (A:B)). In some embodiments, a subject is administered or a composition comprises three second RNAs, each encoding an HA protein of a different influenza virus subtype (e.g., an HA protein of an A/Wisconsin (H1N1) virus, an A/Darwin (H3N2) virus, and a B/Austria (Victoria) virus). In some embodiments, a subject is administered or a composition comprises each of the three second RNAs in the same amount (i.e., at a 1:1:1 ratio). In some embodiments, a subject is administered or a composition comprises a different amount of one or more of the three second RNAs (e.g., in a ratio of between 1:1:2 and 1:1:10 (e.g., in a ratio of 1:1:2, 1:1:3, 1:1:4, or 1:1:5), or in a ratio of between 2:2:1 and 2:2:10, (e.g., in a ratio of 2:2:1, 3:3:1, 4:4:1, or 5:5:1). In some embodiments, a subject is administered or a composition comprises three second RNAs, two of which encode HA proteins of different influenza type A virus, and one of which encodes an HA protein of an influenza type B virus. In some such embodiments, the second RNA encoding an HA protein of an influenza type B virus is present or is administered in a higher amount as compared to either second RNA encoding an HA protein from a type A virus (e.g., in some embodiments, the ratios of the two second RNAs encoding HA proteins from type A influenza viruses relative to the second RNA encoding an HA protein from a type B influenza virus is 1:1:1-10, 1:1:2, 1:1:3, 1:1:4, or 1:1:5 (A:A:B)). In some embodiments, a subject is administered or a composition comprises three second RNAs, two encoding an HA protein of an influenza type A virus and one encoding an HA protein of an influenza type B virus, wherein the ratio of the three second RNAs 1:1:4 (A:A:B). In some embodiments, the two second RNAs encoding an HA protein of an influenza type A viruses are each present or are each administered in a higher amount as compared to the second RNA encoding an HA protein from a type B virus (e.g., in some embodiments, the ratios of the two second RNAs encoding HA proteins from type A influenza viruses relative to the second RNA encoding an HA protein from a type B influenza virus is 1-10:1-10:1, 2:2:1, 3:3:1, 4:4:1, or 5:5:1 (A:A:B)). In some embodiments, a subject is administered or a composition comprises four second RNAs, each encoding an HA protein of a different influenza virus subtype. In some such embodiments, the four second RNAs comprise two second RNAs encoding HA proteins of different influenza type A viruses and two second RNAs encoding HA proteins of different influenza type B virus (e.g., an HA protein of an H1N1 virus, an HA protein of an H3N2 virus, an HA protein of a B/Victoria lineage virus, and an HA protein of a B/Yamagata lineage virus). In some embodiments, each of the two second RNAs encoding an HA protein of an influenza type A virus and each of the two second RNAs encoding an HA protein of an influenza type B virus are present in the same amount (i.e., the ratio of the four second RNAs is 1:1:1:1). In some embodiments, the two second RNAs encoding an HA protein of an influenza type B virus are each administered or are each present in a higher amount as compared to either second RNA encoding an HA protein from a type A virus (e.g., in some embodiments, the ratios of the two second RNAs encoding HA proteins from type A influenza viruses relative to the two second RNAs encoding an HA protein from a type B influenza virus is 1:1:2-10:2-10, 1:1:2-5:2-5, 1:1:2:2, 1:1:3:3, 1:1:4:4, 1:1:5:5, 1:1:6:6, 1:1:7:7, 1:1:8:8, 1:1:9:9, 1:1:10:10 (A:A:B:B)). In some embodiments, a subject is administered or a composition comprises four second RNAs, two encoding an HA protein of an influenza type A virus and two encoding an HA protein of an influenza type B virus, wherein the ratio of the four second RNAs 1:1:5:5 (A:A:B:B). In some embodiments, the two second RNAs encoding an HA protein of an influenza type A virus are each administered or are each present in a higher amount as compared to either second RNA encoding an HA protein from a type B virus (e.g., in some embodiments, the ratios of the two second RNAs encoding HA proteins from type A influenza viruses relative to the two second RNAs encoding an HA protein from a type B influenza virus is 2-10:2-10:1:1, 2-5:2-5:1:1, 2:2:1:1, 3:3:1:1, 4:4:1:1, 5:5:1:1, 6:6:1:1, 7:7:1:1, 8:8:1:1, 9:9:1:1, 10:10:1:1 (A:A:B:B)). In some embodiments, a composition comprises or a subject is administered four second RNAs, comprising three second RNAs that encode HA proteins of different influenza type A viruses and one second RNA encoding an HA protein of an influenza type B virus (e.g., A/Wisconsin (H1N1), A/Darwin (H3N2), A/Cambodia (H3N2), and B/Austria (Victoria)). In some such embodiments, each of the four second RNAs is administered or is present in the same amount (i.e., at a 1:1:1:1 ratio). In some embodiments, the amount of second RNA encoding an HA protein of an influenza type B virus is higher than any one of the second RNAs encoding an HA protein of an influenza type A virus (e.g., in some embodiments, the ratio of second RNAs is 1:1:1:1-10, 1:1:1:1-5,1:1:1:2, 1:1:1:3, 1:1:1:4, or 1:1:1:5 (A:A:A:B)). In some embodiments, the ratio of second RNAs administered or in a composition is 1:1:1:5 (A:A:A:B). In some embodiments, the amount of each of the second RNAs encoding an HA protein of an influenza type A virus is higher than that of the second RNA encoding an HA protein of an influenza type B virus (e.g., in some embodiments, the ratio of second RNAs is 1-10:1-10:1-10:1, 1-5:1-5:1- 5:1, 2:2:2:1, 3:3:3:1, 4:4:4:1, or 5:5:5:1 (A:A:A:B)). In some embodiments, a subject is administered or a composition comprises one or more second RNAs encoding an HA protein of an influenza virus (e.g., two second RNAs, three second RNAs, or four second RNAs, each encoding an HA protein of a different influenza virus) in a total amount of 0.1 to 100 µg (e.g., 1 to 90 µg, 3 to 90 µg, 1 to 60 µg, 3 to 60 µg, 5 to 60 µg, 10 to 60 µg, 30 to 60 µg, 3 to 30 µg). In some embodiments, a subject is administered or a composition comprises one or more second RNAs encoding an HA protein of an influenza virus in a total amount of 3 µg, 5 µg, 6 µg, 10 µg, 15 µg, 20 µg, 25 µg, 30 µg, 45 µg, 60 µg, 75 µg, or 90 µg. In some embodiments, a subject is administered or a composition comprises three or four second RNAs, each encoding an HA antigen of a different influenza strain, in one of the amounts listed in the below Table C (each “Influenza Component” corresponding to a second RNA encoding an HA antige (e.g., a second RNA as described herein). Table 1 Exemplary Amounts of Second RNAs Encoding HA Antigens Combination Influenza Influenza Influenza Influenza Total # Component 1 Component 2 Component 3 Component 4 1 7.5 µg (A type) 7.5 µg (A type) 7.5 µg (B type) 7.5 µg (B type) 30 µg 2 15 µg (A type) 15 µg (A type) 15 µg (B type) 15 µg (B type) 60 µg 3 11.25 µg (A 11.25 µg (A 11.25 µg (B 11.25 µg (B 45 µg type) type) type) type) 4 5 µg (A type) 5 µg (A type) 25 µg (B type) 25 µg (B type) 60 µg 5 2.5 µg (A type) 2.5 µg (A type) 12.5 µg (B 12.5 µg (B 30 µg type) type) 6 7.5 µg (A type) 7.5 µg (A type) 30 µg (B type) - 45 µg 7 7.5 µg (A type) 7.5 µg (A type) 7.5 µg (A type) 7.5 µg (B type) 30 µg In some embodiments, a composition described herein is characterized in that it produces influenza neutralizing antibody titers that are within at least two fold of those produced by a reference vaccine for each influenza virus that it encodes antigens of (e.g., wherein the reference vaccine is a quadrivalent influenza RNA vaccine administered alone, or an approved (non-RNA) influenza vaccine). In some embodiments, the influenza vaccine is an alphainfluenza virus, a betainfluenza virus, a gammainfluenza virus or a deltainfluenza virus vaccine. In some embodiments the vaccine is an Influenza A virus, an Influenza B virus, an Influenza C virus, or an Influenza D virus vaccine. In some embodiments, the influenza A virus vaccine comprises a hemagglutinin selected from H1, H2, H3, H4, H5, H6, H7, H8, H9, H10, H11, H12, H13, H14, H15, H16, H17, and H18, or an immunogenic fragment or variant of the same, or a nucleic acid (e.g., RNA) encoding any one of the same. In some embodiments the influenza A vaccine comprises or encodes a neuraminidase (NA) selected from N1, N2, N3, N4, N5, N6, N7, N8, N9, N10, and N11, or an immunogenic fragment or variant of the same, or a nucleic acid (e.g., RNA) encoding any one of the same. In some embodiments, the influenza vaccine comprises at least one Influenza virus hemagglutinin (HA), neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1 ), non-structural protein 2 (NS2), nuclear export protein (NEP), polymerase acidic protein (PA), polymerase basic protein PB1, PB1-F2, and/or polymerase basic protein 2 (PB2), or an immunogenic fragment or variant thereof, or a nucleic acid (e.g., RNA) encoding any of one of the same. It is contemplated that any embodiment discussed in this specification may be implemented with respect to any method or composition of the disclosure, and vice versa. Furthermore, compositions of the disclosure may be used to achieve methods of the disclosure. Other objects, features and advantages of the present disclosure will become apparent from the following detailed description. It should be understood, however, that the detailed description and the specific examples, while indicating specific embodiments of the disclosure, are given by way of illustration only, since various changes and modifications within the spirit and scope of the disclosure will become apparent to those skilled in the art from this detailed description. Throughout this application, the term “about” is used to indicate that a value includes the inherent variation of error for the measurement or quantitation method. The use of the word “a” or “an” when used in conjunction with the term “comprising” may mean “one,” but it is also consistent with the meaning of “one or more,” “at least one,” and “one or more than one.” The phrase “and/or” means “and” or “or”. To illustrate, A, B, and/or C includes: A alone, B alone, C alone, a combination of A and B, a combination of A and C, a combination of B and C, or a combination of A, B, and C. In other words, “and/or” operates as an inclusive “or.” The words “comprising” (and any form of comprising, such as “comprise” and “comprises”), “having” (and any form of having, such as “have” and “has”), “including” (and any form of including, such as “includes” and “include”) or “containing” (and any form of containing, such as “contains” and “contain”) are inclusive or open-ended and do not exclude additional, unrecited elements or method steps. The phrase “essentially all” is defined as “at least 95%”; if essentially all members of a group have a certain property, then at least 95% of members of the group have that property. In some instances, essentially all means equal to any one of, at least any one of, or between any two of 95, 96, 97, 98, 99, or 100 % of members of the group have that property. The compositions and methods for their use may “comprise,” “consist essentially of,” or “consist of” any of the ingredients or steps disclosed throughout the specification. Compositions and methods “consisting essentially of” any of the ingredients or steps disclosed limits the scope of the claim to the specified materials or steps which do not materially affect the basic and novel characteristic of the claimed disclosure. EXAMPLES EXAMPLE 1: DRUG PRODUCT COMPOSITION The drug product composition is an influenza modRNA drug substance targeting the Wisconsin 2021/2022 hemagglutinin. Table 2 Formulation composition of the ready-to-use (RTU) presentation of Flu vaccine drug product Components Function Concentration, mg/mL PF-07829855 Drug substance (mRNA) Active 0.1 ALC-0315 Functional lipid 1.43 ALC-0159 Functional lipid 0.18 DSPC Structural lipid 0.31 Cholesterol Structural lipid 0.62 Sucrose Cryoprotectant/Tonicifier 1.3 Tris/Tromethamine Buffer, pH 7.4 0.18 Tris HCl 1.34 Water for injection Solvent/Vehicle q.s. In some embodiments, the immunogenic composition comprising one lipid nanoparticle encapsulated mRNA molecule encoding HA is monovalent and has a dose selected from any one of 1 µg mRNA, 2 µg RNA, 5 µg RNA, and 20 µg RNA. In some embodiments, the immunogenic composition comprising one lipid nanoparticle encapsulated mRNA molecule encoding HA, a second lipid nanoparticle encapsulated mRNA molecule encoding HA, a third lipid nanoparticle encapsulated mRNA molecule encoding NA, and a fourth lipid nanoparticle encapsulated mRNA molecule encoding NA, wherein the total dose is up to 20 µg RNA. In some embodiments, the subject is aged 30-50 years. EXAMPLE 2: SHIPPING AND CONTAINER CLOSURE INFORMATION The Drug Product is shipped frozen on dry ice. The primary container closure is a 2 mL glass Type 1 vial with 13 mm stopper. The drug product should be stored at -60 to -90 °C. EXAMPLE 3: Dosage forms The PF-07252220 influenza modRNA immunogenic composition candidates include one of 3 different dosage forms, selected from 2 monovalent forms and one quadrivalent form, each of which incorporate different constructs of mRNA. Four Constructs of modRNA: • Wisconsin modRNA (Wisc2019 HA) • Phuket modRNA (Phuk2013 HA) • Washington modRNA (Wash2019 HA) • Cambodia modRNA (Camb2020 HA) Accordingly, there are 2 monovalent immunogenic compositions (also referred to herein as drug products (DPs)) and one quadrivalent immunogenic composition. 1. Monovalent including Wisconsin modRNA 2. Monovalent including Phuket modRNA 3. Quadrivalent, which includes Wisconsin modRNA, Phuket modRNA, Washington modRNA, and Cambodia modRNA The immunogenic composition is supplied in a 2 mL glass vial sealed with a chlorobutyl rubber stopper and an aluminum seal with flip-off plastic cap (nominal volume of 0.3 mL). 4.2. Components of the Immunogenic Composition The immunogenic composition includes modRNA encoding a strain-specific full length, codon- optimized HA envelope glycoprotein which is responsible for viral binding to target cells and mediating cell entry. The immunogenic composition is a preservative-free, sterile dispersion of LNPs in aqueous cryoprotectant buffer for IM administration. The immunogenic composition is formulated at 0.1 mg/mL RNA in 10 mM Tris buffer, 300 mM sucrose, pH 7.4 as a single-dose vial with 0.5 mL/vial fill volume, and 0.3 mL nominal volume. 4.2.1. Drug Substance The specific constructs (i.e., Wisconsin modRNA [Wisc2019 HA] and Phuket modRNA [Phuk2013 HA]) or constructs (quadrivalent: Wisconsin modRNA, Phuket modRNA, Washington modRNA, and Cambodia modRNA, in the drug substance (modRNA) are the only active ingredient(s) in the DP. The drug substance is formulated in 10 mM HEPES buffer, 0.1 mM EDTA at pH 7.0 and stored at 20±5 °C in HDPE bottles EVA flexible containers. In addition to the codon-optimized sequence encoding the antigen, the RNA contains common structural elements optimized for mediating high RNA stability and translational efficiency (5'- cap, 5'UTR, 3'-UTR, poly(A) - tail; see table and sequences below). Furthermore, an intrinsic signal peptide (sec) is part of the open reading frame and is translated as an N-terminal peptide. The RNA does not contain any uridines; instead of uridine the modified N1-methylpseudouridine is used in RNA synthesis. The specific constructs each comprise the following elements: 5′-cap analog (m2 7,3’-OGppp(m1 2’-O)ApG) for production of RNA containing a cap1 structure is shown below on the penultimate nucleoside of the 5′-
Figure imgf000120_0001
end of the RNA chain) is incorporated into the drug substance by using a respective cap analog during in vitro transcription. For RNAs with modified uridine nucleotides, the cap1 structure is superior to other cap structures, since cap1 is not recognized by cellular factors such as IFIT1 and, thus, cap1-dependent translation is not inhibited by competition with eukaryotic translation initiation factor 4E . In the context of IFIT1 expression, mRNAs with a cap1 structure give higher protein expression levels. Table 3 Table of elements Element Description Position cap A modified 5’-cap1 structure (m7G+m3'-5'-ppp-5'-Am) 1-2 5’-UTR 5´-untranslated region derived from human alpha-globin 3-54 RNA with an optimized Kozak sequence 3’-UTR The 3´ untranslated region comprises two sequence 3880-4174 elements derived from the amino-terminal enhancer of split (AES) mRNA and the mitochondrial encoded 12S ribosomal RNA to confer RNA stability and high total protein expression. poly(A) A 110-nucleotide poly(A)-tail consisting of a stretch of 4175-4284 30 adenosine residues, followed by a 10-nucleotide linker sequence and another 70 adenosine residues. Sequence GA GAAΨAAAC ΨAGΨAΨΨCΨΨ CΨGGΨCCCCA CAGACΨCAGA GAGAACCCGC 50 CACC 54 (SEQ ID NO: 1) C ΨCGAGCΨGGΨ ACΨGCAΨGCA 3900 CGCAAΨGCΨA GCΨGCCCCΨΨ ΨCCCGΨCCΨG GGΨACCCCGA GΨCΨCCCCCG 3950 ACCΨCGGGΨC CCAGGΨAΨGC ΨCCCACCΨCC ACCΨGCCCCA CΨCACCACCΨ 4000 CΨGCΨAGΨΨC CAGACACCΨC CCAAGCACGC AGCAAΨGCAG CΨCAAAACGC 4050 ΨΨAGCCΨAGC CACACCCCCA CGGGAAACAG CAGΨGAΨΨAA CCΨΨΨAGCAA 4100 ΨAAACGAAAG ΨΨΨAACΨAAG CΨAΨACΨAAC CCCAGGGΨΨG GΨCAAΨΨΨCG 4150 ΨGCCAGCCAC ACCCΨGGAGC ΨAGC (SEQ ID NO: 2) AAAAAA AAAAAAAAAA AAAAAAAAAA 4200 AAAAGCAΨAΨ GACΨAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 4250 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAA 4284 (SEQ ID NO: 3) Ψ = 1-methyl-3'-pseudouridylyl The manufacturing process comprises RNA synthesis via in vitro transcription (IVT) step followed by DNase I and proteinase K digestion steps, purification by ultrafiltration/diafiltration (UFDF), and final filtration and dispense. A platform approach to the IVT, digestion, and purification process steps was used in the production of the four modRNA drug substances. The mRNA drug substance clinical batches were prepared at a scale of 37.6 L starting volume for IVT. The primary objective of the DNase I digestion step is to reduce the size of linear DNA template to enable subsequent removal across the ultrafiltration/diafiltration step. A DNase I solution are added at the end of the final IVT incubation. Temperature and agitation rate from IVT step are maintained during this step. The primary objective of the proteinase K digestion step is to reduce the size of proteins in the reaction mixture for subsequent removal across the ultrafiltration/diafiltration step. Proteinase K solution is added to the reaction vessel and incubated for a predetermined amount of time. Temperature and agitation rate implemented during IVT and DNase digestion steps are maintained during this step. All the material is purified by a single 2-stage Ultrafiltration (UF) and diafiltration (DF) (UFDF) to produce the RNA drug substance. Flat sheet cassette membranes were used as part of the UFDF process. Preferably, the UFDF process does not utilize hollow fiber membranes. The UFDF step removes small process-related impurities and concentrates, and buffer exchanges the RNA into the final DS formulation. Based on the retentate RNA concentration determined after diafiltration 2, the diafiltered retentate is then concentrated, if needed, and recovered through a dual-layer filter into a flexible container. The UFDF system is subsequently rinsed and added to the retentate pool through the same dual-layer filter. Formulation buffer may be added. The final pool is then filtered through a second dual-layer filter into HDPE bottle(s).
Table 4 Batch Results for Influenza modRNA Vaccine Wisconsin Drug Substance Quality but Ana Developmental Clinical Drug Attri lytical Acceptance Developmenta Procedure Crit Material Substance e eria l Material Appear ance Clarity ≤ 6 NTU NT ≤ 3 NTU ≤ 1 NTU (Clarity) Not more Appear intensely ance Colorat colored than (Colorat ion level 7 of the NT ≤ B9 ≤ B9 ion) brown (B) color standard. pH Potentiomet ry 7.0 ± 0.5 NT 6.8 6.8 Content (RNA UV concent spectroscop 2.25 ± 0.25 mg/mL 2.40 mg/mL 2.28 mg/mL 2.17 mg/mL ration) y Identity of RT- Encoded Identity Identit PCR RNA confirmed NT y confirmed Confirmed Sequence Capillary RNA gel integrity electrophor ≥ 60% 87% 86% 88% esis RP- HPLC 5’-Cap Report Results 82% 82% 83% Residua l DNA ≤ 50 112 ng templat qPCR 0 ng DNA/mg RNA NT 23 ng/mg DNA/mg RNA e Endotox Endotoxin ≤ 12.5 EU/mL NT 0.35 EU/ NMT 1.00 in (LAL) mL EU/mL Bioburd en Bioburden ≤ 1 CFU/10 mL NT 0 CFU/10 mL 0 CFU/10mL Specifications only apply to clinical supplies Abbreviations: NTU = nephelometric turbidity units; NT = not tested; ddPCR = digital droplet polymerase chain reaction; RP-HPLC = reversed phased high performance liquid chromatography; qPCR = quantitative polymerase chain reaction; LAL = limulus amebocyte lysate; EU = Endotoxin unit; CFU = Colony forming unit
Table 5 Table 4 Batch Analyses for Wisconsin Clinical Drug Product Analytical Procedure Quality Attributes Acceptance Batch Results Criteria Composition and Strength Appearance (Visual) Appearance White to off-white White to off-white suspension suspension Appearance Appearance (Visible May contain white to Meets (Particles) Particulates) off-white opaque, amorphous particles Subvisible particulate Subvisible particles Particles ≥ 10 µm: ≤ 21 matter 6000 per container Particles/container Particles ≥ 25 µm: ≤ 600 per container 1 Particles/container Potentiometry pH 7.4 ± 0.5 7.4 Osmometry Osmolality 240 – 400 364 mOsm/kg mOsmol/kg Dynamic Light LNP Size 40 -120 nm 67 nm Scattering (DLS) LNP Polydispersity ≤ 0.3 0.2 Fluorescence Assay RNA Content 0.074 – 0.126 0.104 mg/mL mg/mL RNA Encapsulation ≥ 80% 97% HPLC-CAD ALC-0315 Content 0.90 – 1.85 mg/mL 1.39 mg/mL ALC-0159 Content 0.11 – 0.24 mg/mL 0.18 mg/mL DSPC Content 0.18 – 0.41 mg/mL 0.32 mg/mL Cholesterol Content 0.36 – 0.78 mg/mL 0.61 mg/mL Container content Vial content (volume) Not less than 0.30 Not less than labeled mL volume Identity HPLC-CAD Lipid identities Retention times Retention times consistent with consistent with references (ALC- references (ALC- 0315, ALC-0159, 0315, ALC-0159, Cholesterol, DSPC) Cholesterol, DSPC) RT-PCR Identity of encoded Identity conf Confirmed RNA sequence(s) irmed Purity Capillary Gel RNA Integrity ≥ 55% intact RNA 87% Electrophoresis (release) ≥ 50% intact RNA (stability) Safety Endotoxin (LAL) Endotoxin (LAL) ≤ 12.5 EU/mL NMT 5.0 EU/mL Sterility Sterility No growth detected No growth detected Specifications only apply to clinical supplies Abbreviations: NTU = nephelometric turbidity units; NT = not tested; ddPCR = digital droplet polymerase chain reaction; RP-HPLC = reversed phased high performance liquid chromatography; qPCR = quantitative polymerase chain reaction; LAL = limulus amebocyte lysate; EU = Endotoxin unit; CFU = Colony forming unit Table 6 Batch Results for Influenza modRNA Vaccine Phuket Drug Substance Clinical Drug Quality Analytical Acceptance Developmental Substance Attribute Procedure Criteria Material Appearance (Clarity) Clarity ≤ 6 NTU NT ≤ 0 NTU Not more Appearance intensely colored (Coloration) Coloration than level 7 of the NT ≤ B9 brown (B) color standard. pH Potentiometry 7.0 ± 0.5 NT 6.8 Content (RNA UV 2.25 ± 0.25 concentration) spectroscopy mg/mL 2.42 mg/mL 2.20 mg/mL Identity of RT-PCR Encoded RNA Identity confirmed NT Confirmed Sequence RNA integrity Capillary gel electrophoresis ≥ 60% 88% 87% RP-HPLC 5’-Cap Report Results 85% 88% Residual DNA qPCR ≤ 500 ng DNA/mg NT 156 ng DNA/mg template RNA RNA Endotoxin Endotoxin (LAL) ≤ 12.5 EU/mL NT NMT 1.00 EU/mL Bioburden Bioburden ≤ 1 CFU/10 mL NT 0 CFU/10mL Specifications only apply to clinical supplies Abbreviations: NTU = nephelometric turbidity units; NT = not tested; ddPCR = digital droplet polymerase chain reaction; RP-HPLC = reversed phased high performance liquid chromatography; qPCR = quantitative polymerase chain reaction; LAL = limulus amebocyte lysate; EU = Endotoxin unit; CFU = Colony forming unit
Table 7 Batch Analyses for Phuket Clinical Drug Product Analytical Quality Attributes Acceptance Criteria Batch Results Procedure Composition and Strength Appearance Appearance White to off-white White to off-white (Visual) suspension suspension Appearance Appearance (Visible May contain white to Meets (Particles) Particulates) off-white opaque, amorphous particles Subvisible Subvisible particles Particles ≥ 10 µm: ≤ 46 Particles/container particulate matter 6000 per container Particles ≥ 25 µm: ≤ <1 Particles/container 600 per container Potentiometry pH 7.4 ± 0.5 7.3 Osmometry Osmolality 240 – 400 mOsmol/kg 360 mOsm/kg Dynamic Light LNP Size 40 -120 nm 80 nm Scattering (DLS) LNP Polydispersity ≤ 0.3 0.2 Fluorescence RNA Content 0.074 – 0.126 mg/mL 0.086 mg/mL Assay RNA Encapsulation ≥ 80% 94 % HPLC-CAD ALC-0315 Content 0.90 – 1.85 mg/mL 1.39 mg/mL ALC-0159 Content 0.11 – 0.24 mg/mL 0.17 mg/mL DSPC Content 0.18 – 0.41 mg/mL 0.29 mg/mL Cholesterol Content 0.36 – 0.78 mg/mL 0.59 mg/mL Container content Vial content Not less than 0.30 mL Not less than labeled (volume) volume Identity HPLC-CAD Lipid identities Retention times Retention times consistent with consistent with references (ALC- references (ALC-0315, 0315, ALC-0159, ALC-0159, Cholesterol, Cholesterol, DSPC) DSPC) RT-PCR Identity of encoded Identity confirmed Confirmed RNA sequence(s) Purity Capillary Gel RNA Integrity ≥ 55% intact RNA 85 % Electrophoresis (release) Safety Endotoxin (LAL) Endotoxin (LAL) ≤ 12.5 EU/mL NMT 5.0 EU/mL Sterility Sterility No growth detected No growth detected
Table 8 Batch Results for Influenza modRNA Vaccine Cambodia Drug Substance Clinical Drug Quality Analytical Acceptance Developmental Substance Attribute Procedure Criteria Material Appearance (Clarity) Clarity ≤ 6 NTU NT ≤ 1 NTU Not more Appearance intensely colored (Coloration) Coloration than level 7 of the NT ≤ B9 brown (B) color standard. pH Potentiometry 7.0 ± 0.5 NT 6.8 Content (RNA UV 2.25 ± 0.25 concentration) spectroscopy mg/mL 2.31 mg/mL 2.18 mg/mL Identity of ddPCR Encoded RNA Identity confirmed NT Confirmed Sequence RNA integrity Capillary gel electrophoresis ≥ 60% 90% 75% RP-HPLC 5’-Cap Report Results 80% 86% Residual DNA qPCR ≤ 1500 ng 221 ng DNA/mg template DNA/mg RNA NT RNA Endotoxin Endotoxin (LAL) ≤ 12.5 EU/mL NT NMT 1.00 EU/mL Bioburden Bioburden ≤ 1 CFU/10 mL NT 0 CFU/10mL Specifications only apply to clinical supplies Abbreviations: NTU = nephelometric turbidity units; NT = not tested; ddPCR = digital droplet polymerase chain reaction; RP-HPLC = reversed phased high performance liquid chromatography; qPCR = quantitative polymerase chain reaction; LAL = limulus amebocyte lysate; EU = Endotoxin unit; CFU = Colony forming unit
Table 9 . Batch Results for Influenza modRNA Vaccine Washington Drug Substance Quality Analytical Acceptance Developmental Clinical Drug Attribute Procedure Criteria Material Substance Appearance (Clarity) Clarity ≤ 6 NTU NT ≤ 1 NTU Not more Appearance intensely colored (Coloration) Coloration than level 7 of the NT ≤ B9 brown (B) color standard. pH Potentiometry 7.0 ± 0.5 NT 6.9 Content (RNA UV 2.25 ± 0.25 concentration) spectroscopy mg/mL 2.41 mg/mL 2.22 mg/mL Identity of RT-PCR Encoded RNA Identity confirmed NT Confirmed Sequence RNA integrity Capillary gel electrophoresis ≥ 60% 87% 83% RP-HPLC 5’-Cap Report Results 86% 87% Residual DNA ≤ 150 plate qPC 0 ng 364 ng DNA/mg tem R DNA/mg RNA NT RNA Endotoxin Endotoxin (LAL) ≤ 12.5 EU/mL NT NMT 1.00 EU/mL Bioburden Bioburden ≤ 1 CFU/10 mL NT 0 CFU/10mL Specifications only apply to clinical supplies Abbreviations: NTU = nephelometric turbidity units; NT = not tested; ddPCR = digital droplet polymerase chain reaction; RP-HPLC = reversed phased high performance liquid chromatography; qPCR = quantitative polymerase chain reaction; LAL = limulus amebocyte lysate; EU = Endotoxin unit; CFU = Colony forming unit The process parameters for formation and stabilization of lipid nanoparticles are summarized below: Process Parameters for Formation and Stabilization of LNPs Process Parameter Acceptable Range Temperature of aqueous phase 15-25 °C Temperature of organic phase 15-25 °C Flow rate ratio of citrate buffer to diluted drug substance for preparation of aqueous phase 4:1a Flow rate ratio of LNP suspension to citrate buffer for stabilization 2:1a LNP collection vessel temperature 2-25 °C aTarget set-point during LNP formation. Ratios may be calculated from input flow rates. Lipid Nanoparticle (LNP) Formation and Stabilization To form the LNPs, the citrate buffer is combined in-line with the diluted drug substance in a 4:1 flowrate ratio to create the aqueous phase. The organic and aqueous phases are fed into one or more T-mixer(s) to form the LNPs. Post formation of the LNP suspension, the LNPs are stabilized via in-line dilution with citrate buffer in a 2:1 ratio of LNP suspension to citrate buffer and then collected in a vessel which is maintained at 2-25 °C. Buffer Exchange and Concentration To prepare for the Buffer Exchange and Concentration operation, the tangential flow filtration (TFF) membranes are flushed with Tris buffer for equilibration. The LNPs are processed through a tangential flow filtration (TFF) unit operation where they are concentrated and then buffer exchanged with 2 diavolumes of tris buffer to remove ethanol from the suspension. The LNPs are then concentrated further and buffer exchanged with ≥ 8 additional diavolumes of Tris buffer. Table 10 In-Process Controls During Drug Product Manufacturing Description In-process control Acceptance criteria LNP formation and pH of citrate buffer 4.0 ± 0.1 stabilization Buffer exchange, concentration pH of Tris buffer 7.5 ± 0.2 and filtration Concentration adjustment and pH of Sucrose/Tris buffer 7.5 ± 0.2 addition of cryoprotectant Concentration adjustment and RNA content prior to Tris ≥0.133 mg/mL (Action addition of cryoprotectant addition limit) Sterile filtration Bioburden prior to sterile ≤2 CFU/20 mL filtration Sterile filtration Filter integrity pre-use/post-use Pass sterile filtration Aseptic filling Fill weight (measurement) 0.5 mL (0.52 g) ± 4% 4.2.2. Excipients The excipients Tromethamine (Tris base) and Tris Hydrochloride (HCl) present in the LNP drug product are buffer components used in pharmaceuticals and suitable to achieve the desired product pH. Sucrose is also included and was selected for its stabilizing effect to enable storage as a frozen composition prior to distribution and refrigeration at point of use. The 4 lipid excipients in the immunogenic composition are both functional and structural lipids utilized as part of the modRNA platform. 4.3. Dosage and Administration The immunogenic composition is diluted as needed with normal saline, either by in-vial dilution or syringe to syringe mixing, prior to administration of the monovalent compositions or combination for the bivalent compositions. For monovalent dosing, the immunogenic composition is dosed in the range of 3.75 to 30 µg per dose with an injection volume of 0.3 mL. Except for the 30-µg dose, dilution with sterile 0.9% sodium chloride (normal saline) is required for dosing. The 4 dose levels are: • 3.75 µg mRNA • 7.5 µg mRNA • 15 µg mRNA • 30 µg mRNA The Wisconsin immunogenic composition is also dosed as a bivalent vaccine in combination with the Phuket immunogenic composition in a total delivered volume of 0.3 mL. The proposed dosing range (total RNA) and ratios of Wisconsin (W) immunogenic composition to Phuket (P) immunogenic composition in the bivalent immunogenic composition are: • 15 µg at 1W:1P (7.5 µg A + 7.5 µg B) • 30 µg at 1W:1P (15 µg A + 15 µg B) • 22.5 µg at 1W:2P (7.5 µg A + 15 µg B) • 18.75 µg at 1W:4P (3.75 µg A + 15 µg B) For quadrivalent dosing, the immunogenic composition is dosed with an injection volume of 0.3 mL containing each of the 4 modRNA sequences for a total dose of up to 30 µg. No dilution is required for administration of the quadrivalent immunogenic composition Container Closure System. The type I borosilicate glass vials meet USP <660>, Ph. Eur.3.2.1, and JP 7.01 compendial requirements for hydrolytic resistance for Type I glass containers. The chlorobutyl elastomeric stoppers meet USP <381>, Ph. Eur.3.2.9 and JP 7.03 compendial chemical testing requirements for elastomeric closures. 4.4. Storage and Transport, Label and Pack of the Drug Product The immunogenic composition is frozen and stored at ultralow temperature (ULT) (-90 °C to 60 °C) for long-term storage. The influenza modRNA immunogenic composition is comprised of one or more nucleoside-modified mRNAs that encode the full-length HA glycoprotein derived from seasonal human influenza strains. The modRNA is formulated with 2 functional and 2 structural lipids, which protect the modRNA from degradation and enable transfection of the modRNA into host cells after IM injection. Influenza HA is the most abundant envelope glycoprotein on the surface of influenza A and B virions. The primary pharmacology of the influenza modRNA immunogenic composition was evaluated in nonclinical studies in vitro and in vivo. In vitro and in vivo studies demonstrated the mechanism-of-action for the influenza modRNA immunogenic composition, which is to encode influenza HA that induces an immune response characterized by both a strong functional antibody responses and a Th1-type CD4+ and an IFNg+ CD8+ T-cell response. Efficient in vitro expression of the HA glycoprotein from influenza modRNA vaccines was demonstrated in cultured cells. Mouse and rat immunogenicity studies demonstrated that influenza modRNA vaccines elicited strong functional and neutralizing antibody responses and CD4+ and CD8+ T- cell responses. Immunogenicity studies in mice, benchmarked against a licensed, adjuvanted inactivated influenza vaccine, also support the potential use of a multivalent influenza modRNA immunogenic composition formulation to target 4 different influenza virus strains. A Lipid Nanoparticle Encapsulated RNA immunogenic composition Encoding the Influenza HA as a Vaccine Antigen The influenza modRNA immunogenic composition is based on a modRNA platform technology. The single-stranded, 5′-capped modRNA contains an open reading frame encoding the HA vaccine antigen and features structural elements optimized for high efficacy of the RNA. The modRNA also contains a substitution of 1-methyl-pseudouridine for each uridine to decrease recognition of the vaccine RNA by innate immune sensors, such as TLRs 7 and 8, resulting in decreased innate immune activation and increased protein translation. The modRNA is encapsulated in a LNP for delivery into target cells. The formulation contains 2 functional lipids, ALC-0315 and ALC-0159, and 2 structural lipids DSPC (1,2-distearoyl-sn-glycero-3- phosphocholine) and cholesterol. The physicochemical properties and the structures of the 4 lipids are shown in the Table below. Table 11 Lipids in the Formulation Lipid Molecul Molecular Physical Chemical Name (Synonyms) and ar Formula State and Structure Weight Storage [Da] Condition ALC-0315 766 C48H95NO5 Liquid (oil) ((4- -20°C hydroxybutyl)azanediyl)bis(hexane- 6,1-diyl)bis(2-hexyldecanoate) ALC-0159 ~2400- C30H60NO(C2H4O)n Solid 2-[(polyethylene glycol)-2000]-N,N- 2600 OCH3 -20°C ditetradecylacetamide DSPC 790 C44H88NO8P Solid 1,2-Distearoyl-sn-glycero-3- -20°C phosphocholine Cholester 387 C27H46O Solid ol -20°C CAS = Chemical Abstracts Service; DSPC = 1,2-Distearoyl-sn-glycero-3-phosphocholine Influenza modRNA vaccine candidates selected for initial clinical testing will contain the full- length, codon-optimized coding sequence for the HA glycoprotein from the 4 cell-based virus strains recommended for use in the 2021-2022 Northern Hemisphere influenza season. • A/Wisconsin/588/2019 (H1N1) • A/Cambodia/e0826360/2020 (H3N2) • B/Phuket/3073/2013 (B Yamagata) • B/Washington/02/2019 (B Victoria) In another embodiment, PF-07252220 (IRV) vaccine for Suspension for Injection is supplied as a white to off-white sterile frozen liquid, packaged in a 2 mL clear glass vial with a rubber stopper, aluminum overseal and flip off cap. The solution is a white to off-white opalescent liquid which may contain white to off white opaque, amorphous particles. The vial contains 0.5 mL with an extractable volume of 0.3 mL for further dilution via syringe mixing. For in-vial dilution, the vial contents (0.5 mL) should be accounted for the final dosing solution. Each vial includes the 0.1 mg/mL of PF-07252220 in a Lipid Nanoparticle (LNP) construct in 300 mM sucrose and 10 mM Tris, pH 7.4. There is no microbiological growth inhibitor in the formulation. PF-07252220 consists of five variations; four monovalent strain presentations and a quadrivalent strain presentation. The monovalent presentations may be further mixed to bivalent and quadrivalent dosing solutions at the point of use. The stability data presented below applies to all presentations and mixtures. • PF-07836259 (Phuket) Influenza mod RNA Suspension for Injection, 0.1 mg/mL • PF-07829855 (Wisconsin) Influenza mod RNA Suspension for Injection, 0.1 mg/mL • PF-07836261 (Washington) Influenza mod RNA Suspension for Injection, 0.1 mg/ml • PF-07836258 (Cambodia) Influenza mod RNA Suspension for Injection, 0.1 mg/ml • PF-07841697 Quadrivalent Influenza mod RNA Suspension for Injection, 0.1 mg/mL The active investigational product must be stored at -90 to -60°C (-130 to -76°F) prior to use. Vials should be thawed at room temperature (no more than 30 °C/ 86 °F) for approximately 30 minutes and then mixed by gently inverting the vial(s) 10 times. The investigational product will be administered intramuscularly. Table 12 MONOVALENT DOSE PREPARATIONS USING 0.5 ML FILLED VOLUME VIALS OF MONOVALENT INFLUENZA MOD RNA VACCINE Dose Dilution Volume of Volume Final Final Dosing Final Max Type PF- of 0.9% Volume Solution Injection number 07252220 Sodium of concentration Volume of Chloride Dosing (in Diluted Doses solution Syringe/Vial) per DP vial 3.75 Syringe 0.3 mL 2.1 mL 2.4 mL 12.5 mcg/mL 0.3 mL 5 mcg to 7.5 In-Vial 0.5 mL 1.5 mL 2 mL 25 mcg/mL 0.3 mL 4 15 In-Vial 0.5 mL 0.5 mL 1 mL 50 mcg/mL 0.3 mL 2 30 None 0.5 mL 0 mL 0.5 mL 100 mcg/mL 0.3 mL 1 * Dilutions of Influenza mod RNA PF-07252220 are not limited to the preparations described in this table. The preparation instructions provided in this document are intended to support a specific clinical design, however dose preparation is not limited to these specific instruction sets. Active doses in the verified concentration range are acceptable.
Table 13 BIVALENT DOSE PREPARATIONS USING 0.5 ML FILLED VOLUME VIALS OF MONOVALENT INFLUENZA MOD RNA VACCINE AND SYRINGE TO SYRINGE MIX Volum Final Final Strain: DP Volume e of Syring Volum Dosing Final Dos Vial of PF- 0.9% e to e of solution Injectio e Strai 0725222 Sodiu Syring Dosing Concentratio n (mc n 0 in m e Mix Solutio n (total Volum g) Vial Chlorid (1:1) n in active e e into Diluted content) Vial Syring e 1: 7.5 mcg 1 0.5 mL x 1 0.5 mL 0.3 mL 50 mcg/mL 2: 7.5 mcg 2 0.5 mL x 1 0.5 mL 0.3 mL 0.6 mL 0.3 mL vial 1: 15 mcg 1 0.5 mL x 1 0 0.3 mL 2: 15 mcg 2 0.5 mL x 1 0 0.3 mL 0.6 mL 100 mcg/mL 0.3 mL vial 1: 30 mcg 1 0.5 mL x 2 0 0.5 mL 2: 30 mcg vials 1 mL 100 mcg/mL 0.6 mL 2 0.5 mL x 2 0 0.5 mL vials *Bivalent doses can be made of any 2 monovalent strains, designated as Strain 1 and Strain 2
Table 14 BIVALENT DOSE PREPARATIONS USING 0.5 ML FILLED VOLUME VIALS OF MONOVALENT INFLUENZA MOD RNA VACCINE AND IN-VIAL MIX (VOLUME OF VIAL STRAIN 1 TRANSFERRED TO VIAL STRAIN 2) Strain: DP Volume of Volume of In- Vial Mix: Final Final Dosing Final Dose Vial PF- 0.9% Volume of Vial Volume of solution Injection (mcg) Strain 07252220 Sodium Strain 1 Dosing Concentration Volume in Vial Chloride transferred to Solution in (total active into Vial Vial Strain 2 Diluted Vial content) 1: 7.5 1 0.5 mL 0.5 mL 0.5 mL 1 mL in Vial 75 mcg/mL 0.3 mL mcg 2 2: 15 mcg 2 0.5 mL 0 N/A 1: 3.75 1 0.5 mL 1.5 mL 0.5 mL 1 mL in Vial 62.5 mcg/mL 0.3 mL mcg 2 2: 15 2 0.5 mL 0 N/A mcg *Bivalent doses can be made of any 2 monovalent strains, designated as Strain 1 and Strain 2 Table 15 QUADRIVALENT DOSE PREPARATIONS USING 100 MCG/ML QUADRIVALENT INFLUENZA MOD RNA VACCINE olume of PF- Volume of Final Dosing Injection Max number Dose Dilution 07252220 0.9% Sodium Solution Volume of Doses per Type Chloride concentration DP vial 7.5 mcg per None 0.5 mL N/A 100 mcg/mL 0.3 mL 1 strain 15 mcg per None 0.5 mL x 2 N/A 100 mcg/mL 0.6 mL 1 strain vials Table 16 QUADRIVALENT DOSE PREPARATIONS USING 0.5 ML FILLED VOLUME VIALS OF MONOVALENT INFLUENZA MOD RNA VACCINE AND SYRINGE TO SYRINGE MIX Strain: DP Volume of Step 1: Volume Step 2: Final Dosing Final Dose Vial PF- Volume of Volume solution Injection (mcg) Strain 07252220 from Vial for0.9 % from Step 1 Concentration Volume in Vial syringe to Sodium for syringe (total active syringe mix Chloride to syringe content) mix 1: 7.5 1 0.5 mL 0.3 mL 1.6 mL 1.1 mL from 60 mcg/mL 1 mL mcg syringe A 2: 7.5 mcg 3: 22.5 2 0.5 mL 0.3 mL 4: 22.5 3 0.5 mL x 2 0.6 mL N/A 0.9 mL from vials syringe B 4 0.5 mL x 2 0.6 mL vials 1: 7.5 1 0.5 mL 0.3 mL 0.4 mL 0.3 mL from 90 mcg/mL 1 mL mcg syringe A 2: 7.5 mcg 3: 37.5 2 0.5 mL 0.3 mL 4: 37.5 3 0.5 mL x 2 0.6 mL N/A 0.9 mL from vials syringe B 4 0.5 mL x 2 0.6 mL vials *Quadrivalent doses can be made of any 4 monovalent strains, designated as Strain 1, 2, 3, and 4 EXAMPLE 4: NONCLINICAL STUDIES An initial mouse immunogenicity study was conducted using an influenza modRNA immunogenic composition encoding the HA sequence from A/California/07/2009 (H1N1). This HA sequence differs from the H1N1 HA antigen that will be used in the clinical study due to strain differences, but the modRNA was formulated with the same clinical LNP composition and provides supportive data for the platform. BALB/c mice were immunized IM with 1 μg of the LNP-formulated influenza modRNA vaccine on Days 0 and 28. ELISA of sera obtained on Days 28 and 49 showed high levels of HA-binding IgG. Sera obtained as early as 14 days after the first dose had high neutralization titers against A/California/07/2009 influenza virus, and by Day 49 (21 days after the second dose) serum influenza neutralization titers exceeded 1 × 104. The HAI titers against A/California/07/2009 measured in sera drawn on Day 49 greatly exceeded the titer of 40 that is generally accepted as protective against influenza in humans. BALB/c mice were immunized twice IM with 1 μg of the vaccine candidate. HA-specific IgG was measured by ELISA. The functionality of the antibodies was measured by influenza virus microneutralization. IFNγ ELISpot using splenocytes harvested on Day 49 and stimulated with antigen-specific peptides showed strong CD4+ and CD8+ T-cell responses. These data confirmed that modRNA formulated with LNPs elicited Th1 phenotype T-cell responses. BALB/c mice received 2 IM immunizations with 1 μg of modRNA encoding influenza HA. The T-cell response was analyzed using antigen-specific peptides to stimulate T cells recovered from the spleen. IFNγ release was measured after peptide stimulation using an ELISpot assay. The primary serological assay used to measure vaccine-induced immune responses to influenza is the hemagglutinin inhibition assay, or HAI. The HAI quantitatively measures functional antibodies in serum that prevent HA-mediated agglutination of red blood cells in reactions containing receptor-destroying enzyme pretreated serum samples, influenza virus and red blood cells derived from turkey or guinea pig. The HAI titer is the reciprocal of the highest serum dilution resulting in loss of HA activity, visualized as a teardrop shape when the microtiter plate is tilted. Titers from multiple determinations per sample are reported as geometric mean titers (GMT). A HAI titer of ≥ 1:40 is generally accepted as protective in humans. HAI assays have been developed for each of the 4 influenza strains, A/Wisconsin/588/2019 (H1N1), A/Cambodia/e0826360/2020 (H3N2), B/Phuket/3073/2013 (B Yamagata) and B/Washington/02/2019 (B Victoria). The influenza virus microneutralization assay, or MNT, quantitatively measures functional antibodies in serum that neutralize influenza virus activity, preventing productive infection of a host cell monolayer. A neutralization reaction occurs when influenza virus is incubated with serum samples; this reaction mixture is then applied to a monolayer of Madin- Darby Canine Kidney (MDCK) cells to measure the extent of neutralization. MNT titers are reported as the reciprocal of the dilution that results in 50% reduction in infection when compared to a no serum control. Study to evaluate the feasibility of bi-valent modRNA HA flu vaccine with pre-mixed drug substance (RNA) to form an LNP and post-mixed LNP arms As used herein unless stated otherwise, a “pre-mixed” drug substance refers to a composition wherein RNA expressing either HA or NA is mixed in a desired ratio, followed by a single formulation into an LNP. A “post-mixed” drug product refers to a composition wherein each RNA expressing either HA or NA is encapsulated in an LNP and the resulting RNA- encapsulated LNPs are then mixed in a desired ratio. Hemagglutination-inhibition (HAI) antibody titers were examined in mice administered with a formulation as described in the following table. Study design Table: Table 17 Dose Dose Vol Vax Bleed Gp# Mice RNA drug product (DP, i.e., RNA encapsulated LNP) Description (µg) / Route (Day) (Day) 1 10 Saline - 50 µl / IM 0, 28 21, 42 LNP modRNA HA mono-valent – Wisc 21, 2 10 Strain 1 50 µl / IM 0, 28 42 10 mM Tris and 300 mM Sucrose LNP modRNA HA mono-valent - Wisc 21, 3 10 Strain 0.2 50 µl / IM 0, 28 42 10 mM Tris and 300 mM Sucrose LNP modRNA HA mono-valent – Phuket 21, 4 10 Strain 1 50 µl / IM 0, 28 42 10 mM Tris and 300 mM Sucrose LNP modRNA HA mono-valent – Phuket 21, 5 10 Strain 0.2 50 µl / IM 0, 28 42 10 mM Tris and 300 mM Sucrose LNP modRNA HA pre-mix bi-valent, i.e., Bivalent Wisconsin and Phuket (DS mixed 21, 6 10 2 50 µl / IM 0, 28 prior to LNP formation) 42 10 mM Tris and 300 mM Sucrose LNP modRNA HA pre-mix bi-valent, i.e., Bivalent Wisconsin and Phuket (DS mixed 21, 7 10 0.4 50 µl / IM 0, 28 prior to LNP formation) 42 10 mM Tris and 300 mM Sucrose LNP modRNA HA post-mix bi-valent, i.e., 21, 8 10 Bivalent Wisconsin and Phuket (LNP mix) 2 50 µl / IM 0, 28 42 10 mM Tris and 300 mM Sucrose LNP modRNA HA post-mix bi-valent, i.e., 21, 9 10 Bivalent Wisconsin and Phuket (LNP mix) 0.4 50 µl / IM 0, 28 42 10 mM Tris and 300 mM Sucrose High HAI Titers were induced by Wisconsin HA modRNA at 3 wks post-dose 1. Slightly Higher HAI in Bi-Valent Groups. Higher HAI in pre-mix Formulation for Bi-valent at 0.2ug Dose. See tables 17-18 below. Table 18 GMTs 3 weeks post-dose 1 (Wisconsin) GMT: 10 422 260 453 130 Sample: Saline bi-val. bi-val. bi-val. bi-val. (Group 1) pre-mix. pre-mix. post- post- mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) Table 19 GMTs 3 weeks post-dose 1 (Phuket) GMT: 10 25 13 28 10 Sample: Saline bi-val. bi-val. bi-val. bi-val. (Group 1) pre-mix. pre-mix. post- post- mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) It was also observed that 50% Neutralizing Ab Titers Were Comparable Between Pre-Mix and Post-Mix Drug Product. See Tables 19-22 below. Table 20 at 3 weeks post-dose 1 (against Wisconsin) GMT 165 14319 9393 24043 5221 Sample: Saline bi-val. pre- bi-val. pre- bi-val. post- bi-val. post- mix. mix. mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) Table 21 at 2 weeks post-dose 2 (against Wisconsin) GMT 169 1286052 290731 1187870 278031 Sample: Saline bi-val. pre- bi-val. pre- bi-val. post- bi-val. post- mix. mix. mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) Table 22 at 3 weeks post-dose 1 (against Phuket) GMT 60 730 1051 1089 265 Sample: Saline bi-val. pre- bi-val. pre- bi-val. post- bi-val. post- mix. mix. mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) Table 23 at 2 weeks post-dose 2 (against Phuket) GMT 103 31818 6800 29035 8186 Sample: Saline bi-val. pre- bi-val. pre- bi-val. post- bi-val. post- mix. mix. mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug)
HAI Titers Were Comparable Between Pre-Mix Versus Post-Mix Drug Product. See tables 23- 26 below. Table 24 at 3 weeks post-dose 1 (against Wisconsin) GMT 10 422 260 453 130 Sample: Saline bi-val. pre- bi-val. pre- bi-val. post- bi-val. post- mix. mix. mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) Table 25 at 2 weeks post-dose 2 (against Wisconsin) GMT 10 2986 2389 3152 2229 Sample: Saline bi-val. pre- bi-val. pre- bi-val. post- bi-val. post- mix. mix. mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) Table 26 at 3 weeks post-dose 1 (against Phuket) GMT 10 25 13 28 10 Sample: Saline bi-val. pre- bi-val. pre- bi-val. post- bi-val. post- mix. mix. mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) Table 27 at 2 weeks post-dose 2 (against Phuket) GMT 10 1040 243 844 184 Sample: Saline bi-val. pre- bi-val. pre- bi-val. post- bi-val. post- mix. mix. mix. mix. RNA Dose -- 2 0.4 2 0.4 (ug) EXAMPLE 5: DESCRIPTION OF QUADRIVALENT DRUG PRODUCT The quadrivalent drug product is a preservative-free, sterile dispersion of liquid nanoparticles (LNP) in aqueous cryoprotectant buffer for intramuscular administration. The drug product is formulated at 0.1 mg/mL RNA in 10 mM Tris buffer, 300 mM sucrose, pH 7.4. The drug product is supplied in a 2 mL glass vial sealed with a chlorobutyl rubber stopper and an aluminum seal with flip-off plastic cap (maximum nominal volume of 0.3 mL). Table 28 Composition of Quadrivalent Drug Product Nominal Uni Filled Amount or Name of Ingredient Grade/Quality t Funct Amount Net Standard ion Formula (mg/mL) (Total Quantity mg/vial) (Net mg/vial) PF-07829855 Drug In-house Active Substance (Wisconsin) specification ingredient 0.025 0.013 0.008 PF-07836258 Drug In-house Active Substance (Cambodia) specification ingredient 0.025 0.013 0.008 PF-07836259 Drug In-house Active Substance (Phuket) specification ingredient 0.025 0.013 0.008 PF-07836261 Drug Substance In-house Active specificat 0.025 0.013 0.008 (Washington) ion ingredient ALC-0315a In-house Functional specification lipid 1.43 0.72 0.43 ALC-0159b In-house Functional specification lipid 0.18 0.09 0.05 DSPCc In-house Structural specification lipid 0.31 0.16 0.09 Cholesterol Ph. Eur., NF Structural lipid 0.62 0.31 0.2 Sucrose Ph. Eur., NF Cryoprotecta nt 102.69 51.35 30.81 Tromethamine (Tris base) Ph. Eur., USP Buffer component 0.20 0.10 0.06 Tris (hydroxymethyl) aminomethane In-house Buffer e (Tris HCl) speci 1.32 0.66 0.40 hydrochlorid fication component Water for Injection Ph. Eur., USP, q.s.d to q.s. d to q.s. d to JP Solvent 1.00 mL 0.50 mL 0.30 mL a. ALC-0315 = ((4-hydroxybutyl)azanediyl)bis(hexane-6,1-diyl)bis(2-hexyldecanoate) b. ALC-0159 = 2-[(polyethylene glycol)-2000]-N,N-ditetradecylacetamide c. DSPC = 1,2-Distearoyl-sn-glycero-3-phosphocholine d. q.s. is an abbreviation for quantum satis meaning as much as is sufficient. The recommended storage temperature of the FIH drug substance is -20±5°C. The recommended long term storage temperature of the FIH drug product is -60 to -90°C. The drug product may be stored at 2-8°C at Point of Use. Table 29 Batch Analyses for Quadrivalent Clinical Drug Product Analytical Procedure Quality Attributes Acceptance Criteria Composition and Strength Appearance (Visual) Appearance White to off-white suspension Appearance (Particles) Appearance (Visible May contain white to off-white Particulates) opaque, amorphous particles Subvisible particulate Subvisible particles Particles ≥ 10 µm: ≤ 6000 per matter container Particles ≥ 25 µm: ≤ 600 per container Potentiometry pH 7.4 ± 0.5 Osmometry Osmolality 240 – 400 mOsmol/kg Dynamic Light LNP Size 40 -120 nm Scattering (DLS) LNP Polydispersity ≤ 0.3 Fluorescence Assay RNA Content 0.074 – 0.126 mg/mL RNA Encapsulation ≥ 80% HPLC-CAD ALC-0315 Content 0.90 – 1.85 mg/mL ALC-0159 Content 0.11 – 0.24 mg/mL DSPC Content 0.18 – 0.41 mg/mL Cholesterol Content 0.36 – 0.78 mg/mL Container content Vial content Not less than 0.30 mL (volume) Identity HPLC-CAD Lipid identities Retention times consistent with references (ALC-0315, ALC- 0159, Cholesterol, DSPC) RT-PCR Identity of encoded RNA sequence(s) Identity confirmed Purity Capillary Gel RNA Integrity ≥ 55% intact RNA (release) Electrophoresis ≥ 50% intact RNA (stability) Safety Endotoxin (LAL) Endotoxin (LAL) ≤ 12.5 EU/mL Sterility Sterility No growth detected
Figure imgf000143_0001
Dye incursion Container Closure Integrity Pass
Table 30 Batch Analyses for Quadrivalent Clinical Drug Product Analytical Quality Attributes Acceptance Criteria Procedure Composition and Strength Appearance Appearance White to off-white suspension (Visual) Appearance Appearance May contain white to off-white (Particles) (Visible opaque, amorphous particles Particulates) Subvisible Subvisible particles Particles ≥ 10 µm: ≤ 6000 per particulate matter container Particles ≥ 25 µm: ≤ 600 per container Potentiometry pH 7.4 ± 0.5 Osmometry Osmolality 240 – 400 mOsmol/kg Dynamic Light LNP Size 40 -120 nm Scattering (DLS) LNP Polydispersity ≤ 0.3 Fluorescence RNA Content 0.074 – 0.126 mg/mL Assay RNA Encapsulation ≥ 80% HPLC-CAD ALC-0315 Content 0.90 – 1.85 mg/mL ALC-0159 Content 0.11 – 0.24 mg/mL DSPC Content 0.18 – 0.41 mg/mL Cholesterol Content 0.36 – 0.78 mg/mL Container content Vial content Not less than 0.30 mL (volume) Identity HPLC-CAD Lipid identities Retention times consistent with references (ALC-0315, ALC-0159, Cholesterol, DSPC) RT-PCR Identity of encoded RNA sequence(s) Identity confirmed Purity Capillary Gel RNA Integrity ≥ 55% intact RNA (release) Electrophoresis ≥ 50% intact RNA (stability) Safety Endotoxin (LAL) Endotoxin (LAL) ≤ 12.5 EU/mL Sterility Sterility No growth detected Dye incursion Container Closure Integrity Pass
EXAMPLE 6: LNP Flu HA modRNA Quadrivalent Study The following example describes a study of LNP Flu HA modRNA Quadrivalent, in which mice were administered with different LNP_Flu HA modRNA materials as detailed in the table below. Sera collected at Day 21 post prime and at Day 42 (14 days post boost) were evaluated by serology testing (HAI, and neutralization). Table 31 Mice RNA DP Description Dose (µg) Dose Vol / Vax Bleed Route (Day) (Day) 10 Saline - 50 µl / IM 0, 28 21, 42 10 Quadrivalent (modRNAs premixed & 21, coformulate) 4 50 µl / IM 0, 28 42 10 Quadrivalent (modRNAs premixed & 21, coformulate) 0.8 50 µl / IM 0, 28 42 10 Quadrivalent (LNPs made separately & 21, mixed), "post-mixed" 4 (1ug each) 50 µl / IM 0, 28 42 10 Quadrivalent (LNPs made separately & 0.8 (0.2ug 21, mixed) "post-mixed" each) 50 µl / IM 0, 28 42 HAI Titers were Comparable Between Pre-mixed Versus Post-mixed Drug Product at D21, see following tables 31-35. Table 32 GMTs 3 weeks post-dose 1 (Wisconsin) GMT: 10 686 343 485 299 Sample: Saline Pre- Pre- Post- Post- (Group 1) mixed mixed mixed mixed RNA Dose -- 4 0.8 4 0.8 (ug) Table 33 GMTs 3 weeks post-dose 1 (Cambodia) GMT: 10 686 343 485 299 Sample: Saline Pre- Pre- Post- Post- (Group 1) mixed mixed mixed mixed RNA Dose -- 4 0.8 4 0.8 (ug) Table 34 GMTs 3 weeks post-dose 1 (Cambodia) GMT: 28 40 49 46 53 Sample: Saline Pre- Pre- Post- Post- (Group 1) mixed mixed mixed mixed RNA Dose -- 4 0.8 4 0.8 (ug) Table 35 GMTs 3 weeks post-dose 1 (Washington) GMT: 14 26 21 30 23 Sample: Saline Pre- Pre- Post- Post- (Group 1) mixed mixed mixed mixed RNA Dose -- 4 0.8 4 0.8 (ug) Table 36 GMTs 3 weeks post-dose 1 (Phuket) GMT: 10 61 36 -- 53 Sample: Saline Pre- Pre- Post- Post- (Group 1) mixed mixed mixed mixed RNA Dose -- 4 0.8 4 0.8 (ug) H1N1 A/Wisconsin: Comparable 50% Neutralization Titers Between Pre-mix and Post-Mix were observed. H3N2 A/Cambodia: Comparable 50% Neutralization Titers Between Pre-mix and Post-Mix were observed. By/Phuket: Comparable 50% Neutralization Titers Between Pre-mix and Post-Mix were observed. Bv/Washington: Comparable 50% Neutralization Titers Between Pre-mix and Post-Mix were also observed. EXAMPLE 7 : Immunogenicity Data in Mice of a Multivalent Influenza modRNA Vaccine, cont’d To evaluate the feasibility of a multivalent formulation of the modRNA influenza vaccine, modRNAs encoding 4 different HA proteins and 4 different neuraminidase (NA) proteins were generated. Immune responses elicited by mice vaccinated with LNP-formulated modRNA encoding a single strain-specific HA or NA were compared to groups vaccinated with an octavalent HA/NA modRNA formulation. Octavalent formulation methods were compared by separately formulating each modRNA expressing HA or NA in LNPs and then mixing the eight LNPs together in equal ratios, or by pre-mixing the eight modRNAs followed by a single co- formulation in LNPs. BALB/c mice were immunized IM with 2 μg of each HA and NA-expressing modRNA either as a monovalent or octavalent vaccine formulation in LNPs on Days 0 and 28. Robust antibody and T cell responses were elicited by LNP-formulated modRNA to all HA and NA components, at levels similar to or greater than the licensed vaccine comparator. Similar HAI and neutralizing responses were observed on Day 49 (21 days after the second boost) for individual HA and octavalent formulations for influenza A strains. Antibodies measured against NA showed a similar trend as HA (data not shown). Immunogenicity studies in mice, benchmarked against a licensed, adjuvanted inactivated influenza vaccine, support the potential use of a multivalent influenza modRNA vaccine formulation to target at least four different influenza virus strains. Initial immunogenicity studies in mice of an octavalent HA/NA modRNA vaccine indicated no interference for influenza A strains and exhibited antibody responses for influenza B strains in comparison to monovalent control vaccines. These initial mouse immunogenicity data support the use of a multivalent modRNA formulation. EXAMPLE 8: modRNA Flu Quadrivalent Feasibility Study This study was performed to evaluate the immunogenicity of a quadrivalent modRNA vaccine candidate encoding influenza hemagglutinin (HA) from the four strains recommended for the Northern Hemisphere 21-22 season (H1N1 A/Wisconsin/588/2019, H3N2 B/Cambodia/e0826360/2020, By/Phuket/3073/2013, Bv/Washington/02/2019) compared to a monovalent modRNA-HA vaccine of each strain. Historically, lower titers have been induced against the less immunogenic Flu B strains when mixed in a multivalent formulation. This study investigated whether that interference can be rescued if Flu B doses in the vaccine were increased 2X or 4X relative to Flu A doses. Intramuscular immunization of Balb/c mice with LNP-formulated modRNA-HA monovalent or quadrivalent vaccines induced functional antibody responses as measured by the Hemagglutination Inhibition Assay (HAI) and 1-day Microneutralization Assay (MNT) at Day 21 (3 weeks post dose 1) and Day 42 (2 weeks post dose 2). Monovalent and quadrivalent vaccines were similarly immunogenic against the two A strains at D21, with a robust boost effect observed 2 weeks after the second dose. Interference was observed in titers elicited by the quadrivalent modRNA vaccine only against B/Washington at D21. After the second dose, a modest increase in titers was observed for the B strains. At D42, interference was observed for both B/Phuket and B/Washington. This interference was rescued at the low dose for both strains by increasing the Flu B HA concentration 2X or 4X compared to the Flu A HA. An effective quadrivalent modRNA Influenza vaccine may potentially include an adjusted Flu B dose. The purpose of this study was to evaluate the feasibility of a quadrivalent modRNA-HA influenza vaccine. The objectives were two-fold: 1) to compare the immunogenicity of a quadrivalent vs. monovalent modRNA formulation in mice to assess levels of interference and 2) to determine if altering the dose composition of Flu B can “rescue” any interference. The influenza modRNA composition comprises up to 4 nucleoside-modified mRNAs that encodes the full-length hemagglutinin (HA) glycoprotein derived from a seasonal human influenza strain. The modRNA is formulated with two functional and two structural lipids, which protect the modRNA from degradation and enable transfection of the modRNA into host cells after intramuscular (IM) injection. The modRNA in the quadrivalent vaccine and the monovalent comparators studied herein encode HA proteins from the four strains recommended for the 2021-2022 Northern Hemisphere Influenza season. These strains are A/Wisconsin/588/2019 (H1N1)pdm09; A/Cambodia/e0826360/2020 (H3N2); B/Phuket/3073/2013 (B/Yamagata/16/88 lineage); and B/Washington/02/2019 (B/Victoria/2/87 lineage). Balb/c mice were immunized on Days 0 and 28 with either a monovalent modRNA-HA vaccine for one of the four recommended strains or a quadrivalent composition. Quadrivalent vaccines were mixed either as modRNA drug substances then coformulated into LNPs (pre-mix) or as LNPs after formulation of each drug substance (post-mix), as described in earlier Examples. Increased relative Flu B doses (either 2X or 4X higher than Flu A doses) were tested to determine optimal dose for the less immunogenic B strains. Serum was collected 21 days post prime and 14 days post boost. Anti-HA antibodies were measured by the Hemagglutination Inhibition Assay (HAI) and 1-day Microneutralization Assay (MNT) to determine immunogenicity. This study was designed with 17 groups as shown in Table 37, each containing a total of 10 female mice (strain of mice: Balb/c). The modRNA drug products were evaluated at 0.05 mL dose volume. Table 37 Study design Gp Mice RNA DP Description Dose (µg) Dose Vol / Vax Bleed # Route (Day) (Day) 1 10 Saline - 50 µL / IM 0, 28 21, 42 2 10 A/Wisconsin (H1N1) modRNA HA 1 50 µL / IM 0, 28 21, monovalent 42 3 10 A/Wisconsin (H1N1) modRNA HA 0.2 50 µL / IM 0, 28 21, monovalent 42 4 10 A/Cambodia (H3N2) modRNA HA 1 50 µL / IM 0, 28 21, monovalent 42 5 10 A/Cambodia (H3N2) modRNA HA 0.2 50 µL / IM 0, 28 21, monovalent 42 6 10 B/Phuket (By) modRNA HA 1 50 µL / IM 0, 28 21, monovalent 42 7 10 B/Phuket (By) modRNA HA 0.2 50 µL / IM 0, 28 21, monovalent 42 8 10 B/Washington (Bv) modRNA HA 1 50 µL / IM 0, 28 21, monovalent 42 9 10 B/Washington (Bv) modRNA HA 0.2 50 µL / IM 0, 28 21, monovalent 42 10 10 Quadrivalent (modRNAs premixed 4 50 µL / IM 0, 28 21, & coformulate) 42 Gp Mice RNA DP Description Dose (µg) Dose Vol / Vax Bleed # Route (Day) (Day) 11 10 Quadrivalent (modRNAs premixed 0.8 50 µL / IM 0, 28 21, & coformulate) 42 12 10 Quadrivalent (LNPs made 4 50 µL / IM 0, 28 21, separately & mixed) (1 µg each) 42 13 10 Quadrivalent (LNPs made 0.8 50 µL / IM 0, 28 21, separately & mixed) (0.2 µg each) 42 14 10 Quadrivalent (LNPs made 4 50 µL / IM 0, 28 21, separately & mixed) – 2x Flu B (0.66 µg H1, H3 & 42 dose 1.32 µg Bv, By) 15 10 Quadrivalent (LNPs made 1.2 (0.2 µg H1, H3 50 µL / IM 0, 28 21, separately & mixed) – 2x Flu B & 0.4 µg Bv, By) 42 dose 16 10 Quadrivalent (LNPs made 4 (0.4 µg H1, H3 & 50 µL / IM 0, 28 21, separately & mixed) – 4x Flu B 1.6 µg Bv, By) 42 dose 17 10 Quadrivalent (LNPs made 2 (0.2 µg H1, H3 & 50 µL / IM 0, 28 21, separately & mixed) – 4x Flu B 0.8 µg Bv, By) 42 dose One 0.3 mL syringe was filled to 0.05 mL, and vaccine was administered via the intramuscular route for each animal. Procedure was repeated on day 28 for the booster vaccination. Table 38 Test Article and Diluent Item Test articles/Diluent Formulation Matrix Gps to be used Vials #/ Storage # and information 1 Saline 0.9% NaCl in water 1 and as diluent 2 bottles for groups 2-17 RT 2 LNP HA mono-valent 0.086 mg/mL of 2-3 and 12-17 5 x 0.5 mL vials plasmid modRNA LNP in 10 mM -80°C (Wisconsin) Tris/300 mM Sucrose, (2) prime, pH 7.4 (2) boost, and 1 extra 3 LNP HA mono-valent 0.117 mg/mL of 4-5 and 12-17 5 x 0.5 mL vials plasmid modRNA LNP in 10 mM -80°C (Cambodia) Tris/300 mM Sucrose, (2) prime, pH 7.4 (2) boost, and 1 extra 4 LNP HA mono-valent 0.093 mg/mL of 6-7 and 12-17 7 x 0.5 mL vials plasmid modRNA LNP in 10 mM -80°C (Phuket) Tris/300 mM Sucrose, (3) prime, pH 7.4 (3) boost, and 1 extra 5 LNP HA mono-valent 0.085 mg/mL of 8-9 and 12-17 9 x 0.5 mL vials plasmid modRNA LNP in 10 mM -80°C (Washington) Tris/300 mM Sucrose, (4) prime, pH 7.4 (4) boost, and 1 extra 6 LNP HA quad-valent 0.100 mg/mL of 10 and 11 6 x 0.5 mL vials plasmid pre-mix DS modRNA LNP in 10 mM -80°C (Wisconsin, Phuket, (2) prime, Cambodia, Tris/300 mM Sucrose, (2) boost, and 2 Washington) pH 7.4 extra Intramuscular immunization of Balb/c mice with LNP formulated modRNA monovalent or quadrivalent vaccines encoding HA antigens from the four recommended NH 21-22 season strains (H1N1 A/Wisconsin/588/2019, H3N2 A/Cambodia/e0826360/2020, B/Phuket/3073/2013 (Yamagata), and B/Washington/02/2019 (Victoria)) induced functional antibody responses as measured by MNT (Figure 1). HAI was performed but overall titers were low except for H1N1 A/Wisconsin, which made data interpretation challenging and therefore will not be included in this report. MNT titers were induced by all the vaccine groups against the four strains with a robust boosting effect at Day 42. Comparable MNT titers were elicited by the quadrivalent modRNA mixes compared to each monovalent modRNA encoding H1N1 A/Wisconsin HA and H3N2 A/Cambodia HA at Day 21 and Day 42 (FIG.1A-H). Minimal difference in titers was observed between the pre-mix and post-mix quadrivalent formulations, although post mix formulations generally trended slightly higher at Day 42. In contrast to the Flu A strains, modest interference was observed for the Flu B strains, although the level of interference was dependent on dose level and time point. For example, MNT titers induced by the quadrivalent vaccine against B/Phuket were comparable to those elicited by the corresponding monovalent modRNA at Day 21, but trended lower at Day 42. Against B/Washington, MNT titers for the high dose (4 µg total) quadrivalent vaccines were reduced almost 3-fold compared to the 1 µg monovalent modRNA-HA control on Day 21, and slight interference for both the low and high dose groups were also observed on Day 42. Quadrivalent titers could be rescued when Flu B HA concentrations were increased 2X and 4X relative to Flu A HA, but mostly for the low dose vaccine groups. FIG.1A-H - Female Balb/c mice were immunized IM on Day 0 and Day 28 with a high (1 µg or 4 µg) or low (0.2 µg or 0.8 µg) dose of either a monovalent LNP-formulated modRNA encoding HA from one of the four vaccine strains (H1N1 A/Wisconsin/588/2019, H3N2 A/Cambodia/ e0826360/2020, By/Phuket/3073/2013, Bv/Washington/02/2019) or a modRNA (pre) or LNP (post) quadrivalent mix. Also tested were quadrivalent mixes with increased relative B strain concentrations at either 2X (4 µg = 0.66 µg H1,H3/1.32 µg By, Bv; 1.2 µg = 0.2 µg H1, H3/0.4 µg By, Bv) or 4X (4 µg = 0.4 µg H1,H3/1.6 µg By, Bv; 2 µg = 0.2 µg H1, H3/0.8 µg By, Bv) doses. Functional antibody responses against all four strains were measured by 1-day MNT on Day 21 (3 weeks post prime) and Day 42 (2 weeks post boost). 50% Neutralization titers are reported. Functional antibody responses were produced against all four NH 21-22 strains (H1N1 A/Wisconsin/588/2019, H3N2 A/Cambodia/ e0826360/2020, By/Phuket/3073/2013, Bv/Washington/02/2019) when Balb/c mice were vaccinated with a high (1 µg/4 µg) or low (0.2 µg/0.8 µg) dose of an LNP-formulated modRNA-HA monovalent or quadrivalent vaccine. Pre- mixed (modRNA) and post-mixed (LNPs) quad-valent constructs were similarly immunogenic for all four strains. At Day 21, MNT titers against H3N2 A/Cambodia, B/Phuket and B/Washington were lower than those against H1N1 A/Wisconsin, but a robust boost effect was observed for all four strains at two weeks after the second dose. Modest interference was detected in the quadrivalent titers against both B strains. However, this interference was counteracted at the low dose when concentrations of the B modRNA-HA were increased to 2 or 4 times the Flu A H1/H3 concentration. Importantly, the immunogenicity against the A strains was maintained at these modified doses. An effective quadrivalent modRNA Influenza vaccine may potentially include an adjusted Flu B dose. EXAMPLE 9: IN VIVO MICE STUDY PRL-Flu-Ms-2022-40, Mice aged 10-13 weeks were immunized with monovalent, bivalent, trivalent, or quadrivalent LNP_Flu modRNA-encapsulated-in-LNP compositions. Sera collected at Day 21 post prime and at Day 42 (14 days post boost). There were 10 mice per group. Each mouse received a 50 µl / IM dose. Study design and materials are shown below: Table 39 Gp#RNA DP Description Formulation Matrix and Dose Vax Bleed information (µg) (Day) (Day) 1 Saline 0.9 % NaCl in water - 0, 28 21, 42 2 Monovalent modRNA HA (B v ) 0.123 mg/mL of modRNA LNP in 0.2 0, 28 21, 42 (B/Austria) 10 mM Tris 10% Sucrose, pH 7.4 3 Monovalent modRNA HA (B y ) 0.122 mg/mL of modRNA LNP in 0.2 0, 28 21, 42 (B/Phuket) 10 mM Tris 10% Sucrose, pH 7.4 Monovalent modRNA HA (A H1 ) 0.126 mg/mL of modRNA LNP in 4 (A/Wisconsin) 10 mM Tris 10% Sucrose, pH 7.40.2 0, 28 21, 42 Monovalent modRNA HA (A H1 ) 0.114 mg/mL of modRNA LNP in 5 (A/Sydney) 10 mM Tris 10% Sucrose, pH 7.40.2 0, 28 21, 42 Monovalent modRNA HA (A H3 ) 0.118 mg/mL of modRNA LNP in 6 (A/Darwin) 10 mM Tris 10% Sucrose, pH 7.40.2 0, 28 21, 42 Monovalent modRNA HA (A H3 ) 0.140 mg/mL of modRNA LNP in 7 (A/Cambodia) 10 mM Tris 10% Sucrose, pH 7.40.2 0, 28 21, 42 8 Bivalent modRNA HA (B v B y ) 0.121 mg/mL of modRNA LNP in 0.4 0, 28 21, 42 (B/Austria + B/Phuket) 10 mM Tris 10% Sucrose, pH 7.4 (0.2 µg ea) 9 Bivalent modRNA HA (B v A H1 ) 0.4 0, 28 21, 42 (B/Austria + A/Wisconsin) 0.128 mg/mL of modRNA LNP in (0.2 µg 10 mM Tris 10% Sucrose, pH 7.4 ea) Trivalent modRNA HA 10 (B v A H1 A H3 ) 0.140 mg/mL of modRNA LNP in 0.6 0, 28 21, 42 (B/Austria + A/Wisconsin + 10 mM Tris 10% Sucrose, pH 7.4 (0.2 µg A/Darwin) ea) Quadrivalent modRNA HA 0.122 mg/mL of modRNA LNP in 11 (B v B y A H1 A H3 ) 10 mM Tris 10% Sucrose, pH 7.40.8 0, 28 21, 42 (B/Austria + B/Phuket + (0.2 µg A/Wisconsin + A/Darwin) ea) Quadrivalent modRNA HA 12 (B v A H1 A H3 A H3 ) 0.116 mg/mL of modRNA LNP in 0.8 0, 28 21, 42 (B/Austria + A/Wisconsin + 10 mM Tris 10% Sucrose, pH 7.4 (0.2 µg A/Darwin + A/Cambodia) ea) Quadrivalent modRNA HA 13 (B v A H1 A H1 A H3 ) 0.118 mg/mL of modRNA LNP in 0.8 0, 28 21, 42 (B/Austria + A/Wisconsin + 10 mM Tris 10% Sucrose, pH 7.4 (0.2 µg A/Sydney + A/Darwin) ea) A trivalent modRNA HA (B/Austria, A/Wisconsin, A/Darwin) 0.6ug composition elicited an immune response in mice, wherein the composition included 0.2 ug of each of the 3 HA. The dose volume and immunization route was 50 ul/IM, administered on day 0 and 28. Bleed occurred on day 21 and 42. Results following immunization according to Table 39 are shown below in Table 40 and Table 41. Group 10 represents the trivalent modRNA HA-encapsulated LNP composition in Table 40 and Table 41. GMT 1 refers to geometric mean titers 3 weeks post dose 1 against Bv/Austria; GMT2 refers to geometric mean titers 3 weeks post dose 1 against By/Phuket; GMT3 refers to geometric mean titers 2 weeks post dose 2 against Bv/Austria; GMT4 refers to geometric mean titers 2 weeks post dose 2 against By/Phuket; GMT5 refers to geometric mean titers 3 weeks post dose 1 against H1N1 A/Wisconsin; GMT6 refers to geometric mean titers 3 weeks post dose 1 against H1N1 A/Sydney; GMT7 refers to geometric mean titers 2 weeks post dose 2 against H1N1 A/Wisconsin; GMT8 refers to geometric mean titers 2 weeks post dose 2 against H1N1 A/Sydney; GMT9 refers to geometric mean titers 3 weeks post dose 1 against H3N2 A/Darwin GMT10 refers to geometric mean titers 3 weeks post dose 1 against H3N2 A/Cambodia GMT11 refers to geometric mean titers 2 weeks post dose 2 against H3N2 A/Darwin GMT12 refers to geometric mean titers 2 weeks post dose 2 against H3N2 A/Cambodia. With respect to Table 41, GMT 13 refers to geometric mean titers 3 weeks post dose 1 against Bv/Austria; GMT14 refers to geometric mean titers 3 weeks post dose 1 against By/Phuket; GMT15 refers to geometric mean titers 2 weeks post dose 2 against Bv/Austria; GMT16 refers to geometric mean titers 2 weeks post dose 2 against By/Phuket; GMT17 refers to geometric mean titers 3 weeks post dose 1 against H1N1 A/Wisconsin; GMT18 refers to geometric mean titers 3 weeks post dose 1 against H1N1 A/Sydney; GMT19 refers to geometric mean titers 2 weeks post dose 2 against H1N1 A/Wisconsin; GMT20 refers to geometric mean titers 2 weeks post dose 2 against H1N1 A/Sydney; GMT21 refers to geometric mean titers 3 weeks post dose 1 against H3N2 A/Darwin; GMT22 refers to geometric mean titers 3 weeks post dose 1 against H3N2 A/Cambodia GMT23 refers to geometric mean titers 2 weeks post dose 2 against H3N2 A/Darwin GMT24 refers to geometric mean titers 2 weeks post dose 2 against H3N2 A/Cambodia Table 40 50% neutralization titer (10x) Gp RNA DP GMT0 GMT0 GMT0 GMT0 GMT0 GMT0 GMT0 GMT0 GMT0 GMT1 GMT1 GMT1 # Description 1 2 3 4 5 6 7 8 9 0 1 2 1 Saline 45 311 30 148 125 92 176 115 54 45 23 20 0.9 % NaCl in water Monovalent 2204 n/a 63787 n/a n/a n/a n/a n/a n/a n/a n/a n/a modRNA HA (B v ) (B/Austria) 0.123 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent 618 n/a 6972 n/a n/a n/a n/a n/a n/a n/a n/a modRNA HA n/a (B y ) (B/Phuket) 0.122 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent n/a n/a n/a n/a 1858 n/a 10938 n/a n/a n/a n/a n/a modRNA HA 8 (A H1 ) (A/Wisconsin) 0.126 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent n/a n/a n/a n/a n/a 1886 n/a 78606 n/a n/a n/a n/a modRNA HA (A H1 ) (A/Sydney) 0.114 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent n/a n/a n/a n/a n/a n/a n/a n/a 1168 n/a 38942 n/a modRNA HA (A H3 ) (A/Darwin) 0.118 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent n/a n/a n/a n/a n/a n/a n/a n/a n/a 165 n/a 980 modRNA HA (A H3 ) (A/Cambodia) 0.140 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Bivalent 4335 595 335735279 n/a n/a n/a n/a n/a n/a n/a n/a modRNA HA (B v B y ) (B/Austria + B/Phuket) 0.121 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Bivalent 3747 n/a 27236 n/a 3648 n/a 13759 n/a n/a n/a n/a n/a modRNA HA 5 (B v A H1 ) (B/Austria + A/Wisconsin) 0.128 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Trivalent n/a 27747 n/a 2431 n/a 14005 n/a 2019 n/a 42936 n/a modRNA HA 3378 5 (B v A H1 A H3 ) (B/Austria + A/Wisconsin + A/Darwin) 0.140 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Quadrivalent 4595 663 357577540 3816 n/a 21329 n/a 4482 n/a 55402 n/a modRNA HA 2 (B v B y A H1 A H3 ) (B/Austria + B/Phuket + A/Wisconsin + A/Darwin) 0.122 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Quadrivalent n/a 23872 n/a 2987 n/a 11313 n/a 4056 404 317262396 12 modRNA HA 3223 2 (B v A H1 A H3 A H 3 ) (B/Austria + A/Wisconsin + A/Darwin + A/Cambodia) 0.116 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Quadrivalent n/a 1524 n/a 3371 2706 12856921892172 n/a 44138 n/a 13 modRNA HA 1553 3 (B v A H1 A H1 A H 3 ) (B/Austria + A/Wisconsin + A/Sydney + A/Darwin) 0.118 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 14 Licensed flu 2771 911 5374 4555 3041 n/a 21427 n/a 1964 n/a 24908 n/a vaccine Table 41 90% neutralization titer (10x) Gp RNA DP GMT GMT GMT1 GMT1 GMT1 GMT1 GMT1 GMT2 GMT2 GMT2 GMT2 GMT2 # Description 13 14 5 6 7 8 9 0 1 2 3 4 1 Saline 30 30 20 20 30 30 20 20 30 30 20 20 0.9 % NaCl in water 2 Monovalent 446 n/a 11839 n/a n/a n/a n/a n/a n/a n/a n/a n/a modRNA HA (B v ) (B/Austria) 0.123 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent 105 n/a 1213 n/a n/a n/a n/a n/a n/a n/a n/a modRNA HA (B y ) (B/Phuket) n/a 0.122 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent n/a n/a n/a n/a 462 n/a 25126 n/a n/a n/a n/a n/a modRNA HA (A H1 ) (A/Wisconsin) 0.126 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent n/a n/a n/a n/a n/a 483 n/a 18110 n/a n/a n/a n/a modRNA HA (A H1 ) (A/Sydney) 0.114 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent n/a n/a n/a n/a n/a n/a n/a n/a 234 n/a 7135 n/a modRNA HA (A H3 ) (A/Darwin) 0.118 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Monovalent n/a n/a n/a n/a n/a n/a n/a n/a n/a 30 n/a 113 modRNA HA (A H3 ) (A/Cambodia) 0.140 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Bivalent modRNA 867 104 7757 1019 n/a n/a n/a n/a n/a n/a n/a n/a HA (B v B y ) (B/Austria + B/Phuket) 0.121 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Bivalent modRNA 834 n/a 6343 n/a 844 n/a 36325 n/a n/a n/a n/a n/a HA (B v A H1 ) (B/Austria + A/Wisconsin) 0.128 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Trivalent 627 n/a 5679 n/a 642 n/a 35062 n/a 386 n/a 7702 n/a 10 modRNA HA (B v A H1 A H3 ) (B/Austria + A/Wisconsin + A/Darwin) 0.140 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Quadrivalent 885 95 8803 1481 820 n/a 55405 n/a 889 n/a 11846 n/a 11 modRNA HA (B v B y A H1 A H3 ) (B/Austria + B/Phuket + A/Wisconsin + A/Darwin) 0.122 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Quadrivalent 702 n/a 5657 n/a 721 n/a 28379 n/a 703 60 6031 279 12 modRNA HA (B v A H1 A H3 A H3 ) (B/Austria + A/Wisconsin + A/Darwin + A/Cambodia) 0.116 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 Quadrivalent 332 n/a 3067 n/a 791 647 3425724363461 n/a 7484 n/a 13 modRNA HA (B v A H1 A H1 A H3 ) (B/Austria + A/Wisconsin + A/Sydney + A/Darwin) 0.118 mg/mL of modRNA LNP in 10 mM Tris 10% Sucrose, pH 7.4 14 Licensed flu 624 148 1570 629 708 n/a 5517 n/a 311 n/a 4039 n/a vaccine A brief description of an exemplary product and other information relevant to establishing the specification are provided in Table 42 Table 42 Product Information Program Name PF-07252220 Influenza modRNA Vaccine Product Name LIMS Product Name DS PF # Encoded Antigens DP-007365 PF- PF-07973057 07973057 Quadrivalent HA NH Quadrivalent 23/241:5 A:B drug Influenza modRNA PF- product Suspension for 07966731 Injection, 0.12 PF- A/Wisconsin/67/2022 mg/ml (1:5 A:B) 07871853 A/Darwin/6/2021 DP-007367 PF- PF- B/Austria/1359417/2021 07872963 PF-07973057 07973057 B/Phuket/3073/2013 Quadrivale PF- Quadrivalent HA NH nt rug Influenza 07836259 23/241:5 A:B d modRNA product Suspension for Injection 0.06 mg/ml (1:5 A:B) DP-007368 PF- PF- PF-08011473 Trivalent 08011473 Trivalent 07966731 Influenza modR A/Wisconsin/67/2022 HA NH 23/241:1:4 NA PF- S A/Darwin/6/2021 A:A:B drug product uspension for 07871853 Injection, 0.09 PF- B/Austria/1359417/2021 mg/ml (1:1:4 A:A:B) 07872963 General Properties mRNA Type modRNA Modified NTP N1-Methylpseudourodine-5’-triphosphate (m1ΨTP) 5’ Cap Analog m2 7,3’-OGppp(m1 2’-O)ApG Specific Absorption Coefficient at 260 nm 25.0 mL/(mg*cm) Manufacturing, Formulation, Dose Manufacturing Process Product specific process involving co-mixing of lipids and mRNA drug substance, followed by TFF, dilution, fill, and capping. Formulation 0.06, 0.09 or 0.12 mg/mL mRNA, 10 mM Tris, 300 mM sucrose, pH 7.4
An exemplary 1:5 (A:B) quadrivalent (qIRV) Influenza drug product and 1:4 (A:B) trivalent (tIRV) Influenza drug product are described as follows. The mRNA constituents are: 1. A/Wisconsin/67/2022 (H1N1) pdm09 -like virus (HA-Wisc/67) (tIRV and qIRV) 2. A/Darwin/6/2021 (H3N2) -like virus (HA-Darw) (tIRV and qIRV) 3. B/Austria/1359417/2021 (B/Victoria lineage) -like virus (HA-Aust) (tIRV and qIRV) 4. B/Phuket/3073/2013 (B/Yamagata lineage) -like virus (HA-Phuk), (qIRV) Table 43 lists the exemplary samples. Table 43 Qualification Samples and the Expected Sequence Ratio Levels Sample Information Concentration HA- HA- HA- Phuk HA-Aust Darw Wisc/67 PF-07973057 Quadrivalent, qIRV Internal Control 0.128 mg/mL 25.0% 25.0% 25.0% 25.0% (00717144-0106-M03) PF-07973057 Quadrivalent, qIRV Sample 1 (00717144- 0.128 mg/mL 25.0% 25.0% 25.0% 25.0% 0106-M03) PF-07973057 Quadrivalent, qIRV Sample 2 (00717144- 0.60 mg/mL 41.7% 41.7% 8.3% 8.3% 0136-M03) PF-07973057 Quadrivalent, qIRV Sample 3 (00717144- 0.60 mg/mL 47.5% 47.5% 2.5% 2.5% 0141-M02) PF-08011473 Trivalent Internal, tIRV Control 0.128 mg/mL N/A 33.3% 33.3% 33.3% (00717144-0106-M03) 1 PF-08011473 Trivalent, tIRV Sample 4 (00717144-0141- 0.60 mg/mL N/A 33.3% 33.3% 33.3% M03) PF-08011473 Trivalent, tIRV Sample 5 (00717144-0136- 0.90 mg/mL N/A 66.6% 16.7% 16.7% M05) PF-08011473 Trivalent, tIRV Sample 6 (00717144-0141- 0.60 mg/mL N/A 95.0% 2.5% 2.5% M04) During testing of tIRV samples, only the mRNA relevant to the tIRV sample were tested, hence the resulting ratio of 33.3% each. EXAMPLE 10: IN VIVO IMMUNOGENICITY STUDY OF CO-FORMULATED mRNA and BLANK LNPs This study was conducted to compare the immunogenicity of co-formulated mRNA and blank LNPs (with N:P ratio of 6 for individual LNPs and increasing lipids concentrations in the formulation) with mRNA LNPs of higher N to P ratios (N:P ratio of 12 and 30 for individual LNPs). The test articles are listed in Table 44, and further described analytically in Table 45, wherein †Endotoxin testing was conducted on unfrozen liquid formulations; 1Sample is equivalent to Group 5 and shares Endotoxin results; ND – Not determined, TBD – To be determined. Each dose was 50 ul administered to mice via IM on days 0 and 28, according to the respective dose listed in Table 44. Each group were composed of 10 Balb/c mice. The mice were bled at day 06hr, 1d, 21d, and 42d following administration. Group 6 is supplied frozen and will complete 1x F/T at the time of dose preparation. Both groups 5 and 6 will serve as a study control. As shown in FIG.2A, modRNA-HA titers were comparable when co-formulated with blank LNPs at high RNA concentrations. ~2-fold increase at low RNA concentration/dose with co-formulation of 5X blank LNPs was observed. Increasing N:P results in ~2-fold boost in titer compared to control. See FIG.2A. Co-formulating modRNA with 5X blank LNPs boosted titers at both high and low RNA concentrations. Increasing N:P resulted in 2 (N:P 12) to 3 (N:P 30) fold boost in neutralizing titers over control. See FIG.2B. Table 44 N:P Descrip Blank Dose Dose Grp# † tion of RNA DP LNPs ent? ( Vol / pres Indiv. mg) Glo Route LNP bal 0.30 mg/mL Flu modRNA, Higher 1 10 mM Tris, 10.3% No 6 6 0.2 50 µl / mRNA w/v Sucrose, pH IM concns, 7.4 Groups 1 & 3 – No blank 0.30 mg/mL Flu LNPs, modRNA, 10 mM Groups 2 2 Tris, 10.3% w/v Yes 6 3 50 µl / Sucrose, 0 0.2 & 4 – pH 7.4 - IM Contain Target lipids eq. to Blank 1.5 mg/mL DP LNPs 3 0.12 mg/mL Flu No 6 6 0.2 50 µl / modRNA, IM 10 mM Tris, 10.3% w/v Sucrose, pH 7.4 0.12 mg/mL Flu modRNA, 10 mM 4 Tris, 10.3% w/v H 7.4 - Yes 6 12 50 µl / Sucrose, p 0.2 IM Target lipids eq. to 0.24 mg/mL DP 0.06 mg/mL Flu modRNA, 5 10 mM Tris, 10.3% No 6 6 0.2 50 µl / w/v Sucrose, pH IM 7.4 Control group 0.06 mg/mL Flu modRNA, 6 10 mM Tris, 10.3% No 6 6 0.2 50 µl / w/v Sucrose, pH IM 7.4, frozen (-80° C) 0.06 mg/mL Flu modRNA, 7 10 mM Tris, 10.3% No 6 6 0.1 50 µl / w/v Sucrose, pH IM 7.4 0.06 mg/mL Flu Lower modRNA, 10 mM mRNA ns, 8 Tris, 10.3% w/v Sucrose, pH 7.4 - Y 50 µl / conc es 6 12 0.1 IM Groups 7 Target lipids eq. to and 9 – 0.12 mg/mL DP No blank LNPs, Groups 8 0.06 mg/mL Flu and 10 – modRNA, in 9 10 mM 50 µl / Conta Tris, 10.3% No 6 6 0.04 w/v Sucr IM Blank ose, pH LNPs 7.4 0.06 mg/mL Flu modRNA, 10 mM 10 Tris, 10.3% w/v pH 7.4 - Yes 6 30 50 µl / Sucrose, 0.04 IM Target lipids eq. to 0.30 mg/mL DP 11 0.06 mg/mL Flu NA, 10 mM N 50 µl / modR o 12 12 0.2 IM Tris, 0.12mg/mL Lipids Equivalent, 10.3% w/v Sucrose, pH 7.4 - N:P 12 High N to P ratio 0.06 mg/mL Flu LNPs modRNA, 10 mM 12 Tris, 0.3 mg/mL , No 3 50 µl / Lipids Equivalent 0 30 0.2 IM 10.3% w/v Sucrose, pH 7.4 - N:P 30 Saline 13 S 50 µl / Control aline NA NA NA NA IM Table 45 Siz % mRNA mRNA e Cells ou Descriptio Concentrat Integrit (nm positiv Categor Gr io n Encapsulatio y (%) / ) / e by Endotoxi y p # n of DP n (%) LMS PDI IVE concentratio n, EU/mL n (mg/mL) (%) by by (32 ng FA DL / 125 S ng) 0.30 mg/mL Flu modRNA, 1 10 mM 0.298 98 81 / 70 / 95 / 98 <2.0 Tris, NMT 3 0.14 10.3% w/v Higher Sucrose, mRNA pH 7.4 concns , 0.30 Groups mg/mL Flu 1 & 3 – modRNA, No 1.5 mg/mL blank Lipids LNPs, Equivalent, 2 0.304 99 78 / 61 / NMT 3 0.17 95 / 94 <2.0 Groups 10 mM 2 & 4 – Tris, Contai 10.3% w/v n Blank Sucrose, LNPs pH 7.4 0.12 mg/mL Flu 3 modRNA, 0.125 96 82 / 75 / NMT 3 0.21 90 / 92 <1.0 10 mM Tris, 10.3% w/v Sucrose, pH 7.4 0.12 mg/mL Flu modRNA, 0.24 mg/mL Lipids 4 Equivalent, 0.129 98 81 / 66 / NMT 3 0.17 96 / 97 <2.0 10 mM Tris, 10.3% w/v Sucrose, pH 7.4 0.06 mg/mL Flu modRNA1 5 0 mM Tris, 0.064 98 81 / 69 / w/v NMT 3 61 / 94 <0.5 10.3% 0.14 Sucrose, pH 7.4 Control groups 0.06 mg/mL Flu modRNA1 6 0 mM Tris, TBD TBD TBD TB ND <0 1 10.3% w/v D .5 Sucrose, pH 7.4, frozen 0.06 mg/mL Flu modRNA, 7 10 mM 0.064 97 81 / 68 / 93 / 98 ower Tris, <1.0 L NMT 3 0.14 mRNA 10.3% w/v concns Sucrose, , pH 7.4 Groups 0.06 7 & 9 – mg/mL Flu No modRNA, blank 0.12 LNPs, mg/mL Lipids Groups 8 Equivalent, 0.070 98 80 / 68 / NMT 3 0 55 / 94 <2.0 8 & 10 .19 – 10 mM Contai Tris, n Blank 10.3% w/v LNPs Sucrose, pH 7.4 9 0.06 80 / 69 / mg/mL Flu 0.063 97 NMT 3 0.14 ND <1.0 modRNA, 10 mM Tris, 10.3% w/v Sucrose, pH 7.4 0.06 mg/mL Flu modRNA, 0.30 mg/mL Lipids 10 Equivalent, 0.062 98 79 / 64 / NMT 3 0.16 89 / 93 <0.5 10 mM Tris, 10.3% w/v Sucrose, pH 7.4 0.06 mg/mL Flu modRNA, 0.12mg/mL Lipids 11 Equivalent, 8 68 / 10 mM 0.059 98 2 / NMT 3 0.14 87 / 94 <2.0 Tris, 10.3% w/v Sucrose, pH 7.4– High N N:P 12 to P ratio LNPs 0.06 mg/mL Flu modRNA, 0.3 mg/mL Lipids 12 Equivalent, 0.059 9 77 / 67 / 10 mM 8 NMT 3 0.13 88 / 94 <2.0 Tris, 10.3% w/v Sucrose, pH 7.4– N:P 30 EXAMPLE 11: ENHANCING Flu B modRNA IMMUNOGENICITY with LNPs CONTAINING CHOLESTEROL C-24 ALKYL DERIVATIVES This study was conducted to compare LNPs containing cholesterol C-24 alkyl derivatives, wherein the LNPs encompass a modified RNA encoding an influenza HA polypeptide from an influenza B strain (Austria). mRNA-LNPs containing cholesterol analogues were formulated by combining an mRNA containing aqueous phase and a lipid containing organic phase using methods known in the art. The organic phase was prepared by solubilizing a mixture of ionizable lipid, DSPC, PEG-lipid, cholesterol and cholesterol analogs at various ratios in ethanol. The organic phase and aqueous phase were mixed at a flow rate ratio of 3:1 by syringe pumps. The resulted solution was dialyzed against 10 mM Tris buffer (pH 7.4). Post- dialysis solution was concentrated and spiked with cryo-protectant to a final mRNA-LNP solution with RNA concentration of 0.1 mg/ml. Immunogenicity in Balb/c mice was evaluated using Neutralization and HAI assays. The test articles are listed in Table 46. Each dose was 50 ul administered to mice via IM on days 0 and 28, according to the respective dose listed in Table 46. Each formulation described throughout the Examples section herein comprises ALC- 0159 pegylated lipid at 1.8% molar percentage in the LNP formulation. Each group were composed of 10 Balb/c mice. The mice were bled at day 21d and 42d following administration. As shown in FIG.3A, a formulation comprising sitosterol and cholesterol increased immunogenicity of modRNA-HA 11-fold at 0.2 ug dose. With an increased N/P ratio, titers were boosted 3-fold comparing to cholesterol-only control. With a low cationic lipid formulation, titers were boosted 4-told. The campesterol-containing formulation induced titers around 2.5-fold. All cholesterol analog formulations induced a measurable response at low dose. FIG.3B and FIG. 3C show the results 2 weeks post dose 2. 90% neutralization titers shown in FIG.4A and FIG. 4B follow a similar trend to 50% titers. Table 46 Formulation description Dose Gr# ALC315 (%) DSPC (%) Chol (%) N/P ratio (µg) n/a n/a n/a n/a n/a 1 Saline control 2 0.2 47.5 10 Cholesterol 40.7 (benchmark) 6 3 0.05 4 0.2 47.5 10 Campesterol 40.7 6 5 0.05 6 Sito 24.4/Chol 16.3 0.2 47.5 10 6 7 (sito:chol=6:4) 0.05 8 47.5 10 Sito 24.4/Chol 16.3 10 0.2 9 (sito:chol=6:4) 0.05 10 Sito 28.3/Chol 18.9, low cat 3 0.2 33.5 17.5 10 11 (sito:chol=6:4) 0.05 EXAMPLE 12: In vitro expression of hemagglutinin (HA) from LNPs formulated with alternative cholesterols. The objective of this Example was to assess in vitro expression (IVE) of hemagglutinin (HA) from lipid nanoparticles (LNPs) formulated with alternative cholesterols and compare this in vitro expression performance to LNPs formulated with novel cholesterols and/or N/P ratios. This Example helped to inform whether or not changing certain cholesterols, and/or N/P ratios, can alter the in vitro expression of HA from an unmodified bi-cistronic saRNA encoding HA and NA of H1N1 A/Wisconsin, in HeLa cells. An exemplary bicistronic saRNA encoding HA and NA include the sequence set forth in SEQ ID NO: 9. Another exemplary bicistronic saRNA includes the the sequence set forth in SEQ ID NO: 10. See, for example, International patent application PCT/IB2023/057034, published as WO2024/013625, entitled, “Self-amplifying rna encoding an influenza virus antigen,” (Pfizer Inc.) filed on July 7, 2023, which is incorporated by reference in its entirety and describes saRNA molecules and bicistronic saRNA. Method: An 11-point, 2-fold dilution of LNPs in HeLa cell cultures was performed. Geometric mean fluorescence intensity (GMFI) of HA positive cells, the percentage of total HA positive cells and cell viability was measured. HeLa cells were plated at a density of 2.0e5 cells per well in a 12-well plate. The LPNs tested are provided in Table 47. Each LNP was tested in triplicate and measurements were made 22 hours post LNP-addition. Table 47 LNP # Sterol N/P ratio 1 Cholesterol (benchmark) 6 2 B-Sitosterol/Cholesterol 6 (6:4) 3 Campesterol 6 4 Stigmasterol/Cholesterol 6 (1:1) 5 Stigmasterol/Cholesterol 10 (1:1) The sterols tested in LNP 2 through 5 increased the percentage of cells expressing the antigen of interest (HA) as shown in FIG.5 (HeLa IVE). The EC50s for LNP 2 through 5 were significantly lower than the EC50 of the benchmark LNP comprising cholesterol (LNP 1) (Table 48). The in vitro activity (IVA) of the cells treated with LNPs 2 through 5 was significantly higher than the activity of the cells treated with the benchmark LNP comprising cholesterol (LNP 1). Table 48 LNP ID N/P Sample EC50 R2 In vitro R2 # (EC50) activity (IVA) 1 6 Cholesterol (benchmark) 1418 0.9339 3.6 0.9972 2 6 B-Sitosterol / Cholesterol (6:4) 2.3 0.9865 2016.0 0.9926 3 6 Campesterol 4.6 0.9854 784.2 0.9961 4 6 Stigmasterol / Cholesterol (1:1) 5.5 0.9757 844.9 0.9932 5 10 Stigmasterol / Cholesterol (1:1) 7.8 0.9933 665.1 0.9962 Note: EC50 values are approximations as a result of force fitting curves due to a lack of complete dilution curves. Optimization of LNPs 2 through 5 using the alternative sterols increased the GMFI for HA staining for all of the sterols tested as compared to the GMFI for HA staining when the cells were treated with the benchmark LNP comprising cholesterol (LNP 1) (FIG.6). Cell viability was measured, and with increasing RNA dose (DP input as ng/well), the cell viability decreased, as measured as percent live cells, in those wells using LNPs 2 through 5, as compared to the percent live cells in wells using the RNA formulated in the benchmark cholesterol LNP (LNP 1) (FIG.7). When cell viability as measured as percentage of live cells was compared to the percentage of cells that stained positive to HA, the LNP comprising beta-sitosterol/cholesterol in a 6:4 ratio exhibited the best relative percentage of antigen positive cells as compared to viability (FIG.8). These data demonstrate that changing the sterol composition of LNPs encapsulating bi- cistronic saRNA led to an increase in the percentage of cells expressing the target antigen of interest, HA. This was observed for all alternative LNPs tested. Both EC50 and in vitro activity values improved with differential LNP compositions, with the b-Sitosterol/Cholesterol (6:4) LNP performing the best. GMFI from HA staining was higher for all LNPs containing alternative sterols, with the b-Sitosterol/Cholesterol (6:4) LNP performing the best. Cell viability was significantly lower for all LNPs containing alternative sterols, as compared to the benchmark LNP 1. b-Sitosterol/Cholesterol (6:4) LNPs demonstrated the best relative ratio of live cells vs. % HA positive, though only slightly better than LNP 4 and 5. EXAMPLE 13: In vitro expression of hemagglutinin (HA) from LNPs formulated with alternative cholesterols. The objective of this Example was to assess in vitro expression (IVE) of GFP (reporter) from lipid nanoparticles (LNPs) formulated with alternative sterols and/or N/P ratios. Each formulation described throughout the Examples section herein comprises ALC-0159 pegylated lipid at 1.8% molar percentage in the LNP formulation. Percentage of encapsulation efficiency (%EE, as used herein throughout), polydispersity index (PDI), and % of intact mRNA as measured by fragment analyzer (FA) are shown in Table 49. Table 49 # Formulation % % % description Cationic Helper Chole- N/P Flow %EE Size PDI FA Lipid Lipid sterol Ratio Rate %intact Chol 1 benchmark- ALC315 47.5 DSPC 10 Chol 40.7 6 97.2 66.2 0.109 85 NP6 2 Chol-NP10 ALC315 47.5 DSPC 10 Chol 40.7 10 98.2 74.9 0.077 85 3 sito/chol mix ALC315 Sito 24.4/ (6:4)-NP6 47.5 DSPC 10 Chol 16.3 6 94.6 95.8 0.039 86 30/10 4 sito/chol mix ALC315 (6:4)-NP10 47.5 DSPC 10 Sito 24.4/ Chol 16.3 10 94.4 95.0 0.012 84 5 sito/chol mix ALC315 DSPC Sito 28.3/ lc3-NP6 33.5 17.5 Chol 18.9 6 98.9 104.2 0.036 84 6 sito/chol mix ALC315 DSPC Sito 28.3/ (6:4) lc3-NP10 33.5 17.5 Chol 18.9 10 97.3 91.5 0.018 83 N/P10 LNPs (i.e., LNPs having an N:P ratio of 10) performed better than N/P6 LNPs (i.e., LNPs having an N:P ratio of 6) in IVE in HEK293T cells, with LC3 mix formulation showing the largest enhancement and cholesterol showing the slightest improvement. See FIG.9A-9B, showing fold change compared to benchmark. The following is an exemplary method to assess the presence and determine the in-vitro expression of mRNA-encoded target protein. Human embryonic kidney (HEK293T) cells are seeded on one to two 12-well culture plates per assay instance and transfected with control and drug product (DP) test samples across two assay instances. After 21-24 hours, cells are harvested from the 12-well plates and transferred to 96-well assay plates. The cells are stained with fixable aqua viability dye before being permeabilized and fixed. After the fixative is washed from the cells, a fluorophore-conjugated HA antibody cocktail is added which binds to influenza HA antigens. The cells are then analyzed for HA expression via flow cytometry, which detects the fluorescent signal of the fluorophore conjugated to the strain-specific anti-HA antibodies. The in-vitro expression of the HA antigen is determined from the average percent of viable, single cells bound with fluorophore-conjugated HA antibody. NP6 and NP10 LNPs with FluB/Austria mod-HA had similar in DP analytics and IVE. In Table 50, various sterol mix ratios are tested. The LNPs encapsulated modified mRNA encoding GFP. Each formulation described throughout the Examples section herein comprises ALC-0159 pegylated lipid at 1.8% molar percentage in the LNP formulation. Decreasing sitosterol percentage in the sterol mixture appeared to result in slightly higher %EE and smaller LNP size. See also FIG.10A-10B, showing fold change compared to benchmark. Sito/chol 1:1 mixture showed slightly better EC50 than the other two ratios. Table 50 Formulatio % % % N/P Flo w %E Siz P FA # n Cholestero R D Cationi Helpe ati Rat E e %intac description l I c Lipid r Lipid o e t sito/chol mix 1 (6:4) std-fast ALC315 47.5 DSPC 10 Sito 24.4/ Chol 1 10 30/10 94.4 95.0 0.012 84 rate-NP10 6.3 sito/chol mix 2 (5:5) std-fast ALC315 47.5 DSPC 10 Sito 20.4/ Chol 20.4 10 30/10 96.8 91.1 0.026 80 rate-NP10 sito/chol mix 3 (4:6) std-fast ALC315 Sito 16.3/ e-NP10 4 DSPC 10 10 30/10 97.3 87.1 0.038 84 rat 7.5 Chol 24.4 In other studies, cholesterol derivatives were observed to increase IVE (~5-10 times) of LNPs encapsulated with RMM72 NA/Wisconsin modRNA. See Table 51. Table 51 FA DLS EE IVE Description %Integrity LMS Size (nm) % IVE % IVE EC50 Cells (ng/well) positive (125ng) β-Sitosterol 88 3 152 56 89 14 Campesterol 87 3 94 87 87 23 Fucosterol (Delta 5-avenasterol) 90 3 144 80 94 15 Stigmastanol (sitostanol) NT NT 124 36 NT NT Stigmasterol NT NT 82 7 NT NT CholPC NT NT 110 17 NT NT Cholesterol 88 3 77 94 50 131 See also Table 52 for data showing IVE of various sterol combinations, wherein the LNP encapsulated RMM72 NA/Wisconsin modRNA. In some preferred embodiments, the sterol comprises Cholesterol : β-Sitosterol 4:6 LNP. Table 52 Description FA DLS IVE %Integrity LMS Size by DLS, %Positive @ IVE EC50 Z-Ave(nm) EE% 125ng (ng/well) Cholesterol : β-Sitosterol 0:1 90 2 150 45 93 11 Cholesterol : β-Sitosterol 1:9 87 4 176 45 95 8 Cholesterol : β-Sitosterol 2:8 89 2 159 47 85 32 Cholesterol : β-Sitosterol 3:7 88 3 116 76 83 28 Cholesterol : β-Sitosterol 4:6 92 1 91 89 94 8 Cholesterol : β-Sitosterol 10:0 91 2 91 86 83 63 LNP encapsulated HA/California modRNA comprising Cholesterol : β-Sitosterol 4:6 showed the excellent combination of integrity, EE and IVE compared to other formulations. See Table 53, wherein Lipid ratio tested was 47.5: 40.7:10:1.8 (ALC-0315: Cholesterol/cholesterol analog: DSPC: ALC-0159); N/P = 6; LNP Matrix had 10mM Tris, 300 mM Sucrose, pH 7.4. LNP encapsulated HA/California modRNA using Cholesterol : β-Sitosterol of 4:6 showed a preferred embodiment of integrity, EE and IVE compared to other tested formulations. Table 53 LMS Size by Cholesterol type %Integrity DLS, Z- PDI EE %Positive @ IVE EC50 NMT Ave(nm) % 125ng (ng/well) β-Sitosterol 79 3% 165 0.11 26 81.3 4 Cholesterol : β- Sitosterol 1:9 60 3% 166 0.08 30 84.4 3 Cholesterol : β- Sitosterol 2:8 83 3% 137 0.08 54 82.8 4 Cholesterol : β- Sitosterol 3:7 79 3% 108 0.08 86 77.5 6 Cholesterol : β- Sitosterol 4:6 85 3% 106 0.07 86 85.1 4 Cholesterol : β- Sitosterol 5:5 85 3% 104 0.1 90 79.8 6 Cholesterol : β- Sitosterol 6:4 80 3% 107 0.12 75 81.1 6 Cholesterol : β- Sitosterol 7:3 84 3% 99 0.11 88 79.1 5 Campesterol (batch 1) 86 3% 106 0.07 87 72.6 7 Campesterol (batch 2) 76 3% 111 0.13 80 81.2 4 Fucosterol 80 3% 157 0.1 79 86.3 3 LNP control (pure cholesterol) 84 3% 94 0.17 94 84.7 5 LNP encapsulated GFP modRNA comprising Cholesterol : β-Sitosterol 4:6 in 293T and HeLa cells were tested and EC50 observed. See Table 54, wherein Lipid ratio tested was 47.5: 40.7:10:1.8 (ALC-0315: Cholesterol/cholesterol analog: DSPC: ALC-0159); N/P = 6; LNP Matrix had 10mM Tris, 300 mM Sucrose, pH 7.4. LNP encapsulated modGFP using Cholesterol : β- Sitosterol of 4:6 showed a preferred embodiment of about 10 times improvement of EC50 as compared to, for example, the cholesterol formulation.
Table 54 sterol %EE %FA Z-Ave EC50 EC50 Description %Chole (d.nm) PDI in in 293T Hela Cholesterol Chol 40.7 94 88 77 0.054 6.1 9.1 Campesterol Cam 40.7 59 88 97 0.033 1.4 1.4 β-Sitosterol Sito 40.7 49 87 154 0.07 1.5 1.9 Cholesterol: β- Sitosterol = Chol 16.3 /Sito 24 76 88 96 0.069 0.63 0.67 0.4:0.6 .4 Clauses 1. An influenza virus vaccine, comprising: at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, formulated in a lipid nanoparticle. 2. The influenza vaccine of clause 1, wherein the RNA further comprises a 5’ cap analog. 3. The influenza vaccine of clause 2, wherein the 5’ cap analog comprises m2 7,3’-OGppp(m1 2’- O)ApG. 4. The influenza vaccine of clause 1, wherein the RNA further comprises a modified nucleotide. 5. The influenza vaccine of clause 4, wherein the modified nucleotide comprises N1- Methylpseudourodine-5’-triphosphate (m1ΨTP). 6. The influenza vaccine of clause 1, wherein the at least one antigenic polypeptide is influenza hemagglutinin 1 (HA1), hemagglutinin 2 (HA2), an immunogenic fragment of HA1 or HA2, or a combination of any two or more of the foregoing. 7. The influenza vaccine of clause 1, wherein at least one antigenic polypeptide is HA1, HA2, or a combination of HA1 and HA2, and at least one antigenic polypeptide is selected from the group consisting of neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non-structural protein 2 (NS2). 8. The influenza vaccine of clause 1, wherein at least one antigenic polypeptide is HA1, HA2, or a combination of HA1 and HA2, and at least one antigenic polypeptide is neuraminidase (NA). 9. The influenza vaccine of clause 1, wherein the composition comprises a) at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding influenza hemagglutinin 1 (HA1); b) at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding hemagglutinin 2 (HA2); c) at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one antigenic polypeptide is selected from the group consisting of neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non-structural protein 2 (NS2); and d) at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one antigenic polypeptide is selected from the group consisting of neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non-structural protein 2 (NS2). 10. The influenza vaccine according to clause 5, wherein the open reading frame is codon- optimized. 11. The influenza vaccine of clause 1, wherein the composition further comprises a cationic lipid. 12. The influenza vaccine of clause 1, wherein the composition comprises a lipid nanoparticle encompassing the mRNA molecule. 13. The influenza vaccine of clause 1, wherein the composition comprises a) a lipid nanoparticle encompassing at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding influenza hemagglutinin 1 (HA1); b) a lipid nanoparticle encompassing at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding hemagglutinin 2 (HA2); c) a lipid nanoparticle encompassing at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one antigenic polypeptide is selected from the group consisting of neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non- structural protein 2 (NS2); and d) a lipid nanoparticle encompassing at least one ribonucleic acid (RNA) polynucleotide having an open reading frame encoding at least one antigenic polypeptide is selected from the group consisting of neuraminidase (NA), nucleoprotein (NP), matrix protein 1 (M1), matrix protein 2 (M2), non-structural protein 1 (NS1) and non- structural protein 2 (NS2). 14. The influenza vaccine of clause 13, wherein the lipid nanoparticle size is at least 40 nm. 15. The influenza vaccine of clause 13, wherein the lipid nanoparticle size is at most 180 nm. 16. The influenza vaccine of clause 13, wherein at least 80% of the total RNA in the composition is encapsulated. 17. The influenza vaccine of clause 1, wherein the composition comprises 18. The influenza vaccine of clause 1, wherein the composition comprises ALC-0315 (4- hydroxybutyl)azanediyl)bis(hexane-6,1-diyl)bis(2-hexyldecanoate). 19. The influenza vaccine of clause 1, wherein the composition comprises ALC-0159 (2- [(polyethylene glycol)-2000]-N,N-ditetradecylacetamide). 20. The influenza vaccine of clause 1, wherein the composition comprises 1,2- Distearoyl-sn- glycero-3-phosphocholine (DSPC). 21. The influenza vaccine of clause 1, wherein the composition comprises cholesterol. 22. The influenza vaccine of clause 1, wherein the composition comprises 0.9-1.85 mg/mL ALC- 0315; 0.11-0.24 mg/mL ALC-0159; 0.18 – 0.41 mg/mL DSPC; and 0.36 – 0.78 mg/mL cholesterol. 23. The influenza vaccine of clause 1, wherein the composition comprises Tris. 24. The influenza vaccine of clause 1, wherein the composition comprises sucrose. 25. The influenza vaccine of clause 1, wherein the composition does not further comprise sodium chloride. 26. The influenza vaccine of clause 1, wherein the composition comprises 10 mM Tris. 27. The influenza vaccine of clause 1, wherein the composition comprises 300 mM sucrose. 28. The influenza vaccine of clause 1, wherein the composition has a pH 7.4. 29. The influenza vaccine of clause 1, wherein the composition has less than or equal to 12.5 EU/mL of bacterial endotoxins. 30. The influenza vaccine of clause 1, wherein the RNA polynucleotide comprises a 5’ cap, 5’ UTR, 3’ UTR, histone stem-loop and poly-A tail. 31. The influenza vaccine of clause 30, wherein the 5’ UTR comprises the sequence AATAAACTAGTATTCTTCTGGTCCCCACAGACTCAGAGAGAACCC (5’ WHO UTR1) (SEQ ID No: 4). 32. The influenza vaccine of clause 30, wherein the 5’ UTR comprises the sequence GAGAAΨAAACΨAGΨAΨΨCΨΨ CΨGGΨCCCCA CAGACΨCAGA GAGAACCCGCCACC (SEQ ID NO: 5) 33. The influenza vaccine of clause 30, wherein the 5’ UTR comprises the sequence AGAATAAACTAGTATTCTTCTGGTCCCCACAGACTCAGAGAGAACCC (5’ WHO UTR1). (SEQ ID NO: 6) 34. The influenza vaccine of clause 30, wherein the 3’ UTR comprises the sequence CUCGAGCUGGUACUGCAUGCACGCAAUGCUAGCUGCCCCUUUCCCGUCCUGGGUAC CCCGAGUCUCCCCCGACCUCGGGUCCCAGGUAUGCUCCCACCUCCACCUGCCCCAC UCACCACCUCUGCUAGUUCCAGACACCUCCCAAGCACGCAGCAAUGCAGCUCAAAAC GCUUAGCCUAGCCACACCCCCACGGGAAACAGCAGUGAUUAACCUUUAGCAAUAAAC GAAAGUUUAACUAAGCUAUACUAACCCCAGGGUUGGUCAAUUUCGUGCCAGCCACAC CCUGGAGCUAGC (3’ WHO UTR2). (SEQ ID NO: 7) The influenza vaccine of clause 30, wherein the 3’ UTR comprises the sequence CΨCGAGCΨGGΨACΨGCAΨGCACGCAAΨGCΨAGCΨGCCCCΨΨΨCCCGΨCCΨG GGΨACCCCGAGΨCΨCCCCCGACCΨCGGGΨCCCAGGΨAΨGCΨCCCACCΨCCAC CΨGCCCCACΨCACCACCΨCΨGCΨAGΨΨCCAGACACCΨCCCAAGCACGCAGCAA ΨGCAGCΨCAAAACGCΨΨAGCCΨAGCCACACCCCCACGGGAAACAGCAGΨGAΨΨ AACCΨΨΨAGCAAΨAAACGAAAGΨΨΨAACΨAAGCΨAΨACΨAACCCCAGGGΨΨGG ΨCAAΨΨΨCGΨGCCAGCCACACCCΨGGAGCΨAGC (3’ WHO ΨTR2).(SEQ ID NO: 8). An immunogenic composition comprising: (i) a first ribonucleic acid (RNA) polynucleotide having an open reading frame encoding a first antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, and (ii) a second RNA polynucleotide having an open reading frame encoding a second antigen, said second antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the first and second RNA polynucleotides are formulated in a lipid nanoparticle (LNP). The immunogenic composition of clause 36, wherein the first and second antigens comprise hemagglutinin (HA), or an immunogenic fragment or variant thereof. The immunogenic composition of clause 36 or 37 wherein the first antigen comprises an HA from a different subtype of influenza virus to the influenza virus antigenic polypeptide or an immunogenic fragment thereof of the second antigen. The immunogenic composition of any of clause 36 - 38, wherein the first and second RNA polynucleotides are formulated in a single lipid nanoparticle. The immunogenic composition of any preceding clause further comprising: (iii) a third antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the third antigen is from influenza virus but is from a different strain of influenza virus to both the first and second antigens. The immunogenic composition of clause 40, wherein the first, second and third RNA polynucleotides are formulated in a lipid nanoparticle. The immunogenic composition of clause 41, wherein the first, second and third RNA polynucleotides are formulated in a single lipid nanoparticle. The immunogenic composition of any preceding clause further comprising: (iv) a fourth RNA polynucleotide having an open reading frame encoding a fourth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fourth antigen is from influenza virus but is from a different strain of influenza virus to the first, second and third antigens. The immunogenic composition of clause 43, wherein the first, second, third, and fourth RNA polynucleotides are formulated in a lipid nanoparticle. 45. The immunogenic composition of clause 44, wherein the first, second, third, and fourth RNA polynucleotides are formulated in a single lipid nanoparticle. 46. The immunogenic composition of any preceding clause further comprising: (v) a fifth RNA polynucleotide having an open reading frame encoding a fifth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fifth antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, and fourth antigens. 47. The immunogenic composition of clause 46, wherein the first, second, third, fourth, and fifth RNA polynucleotides are formulated in a lipid nanoparticle. 48. The immunogenic composition of clause 47, wherein the first, second, third, fourth, and fifth RNA polynucleotides are formulated in a single lipid nanoparticle. 49. The immunogenic composition of any preceding clause further comprising: (vi) a sixth RNA polynucleotide having an open reading frame encoding a sixth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the sixth antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, fourth, and fifth antigens. 50. The immunogenic composition of clause 49, wherein the first, second, third, fourth, and fifth RNA polynucleotides are formulated in a lipid nanoparticle. 51. The immunogenic composition of clause 50, wherein the first, second, third, fourth, and fifth RNA polynucleotides are formulated in a single lipid nanoparticle. 52. The immunogenic composition of any preceding clause further comprising: (vii) a seventh RNA polynucleotide having an open reading frame encoding a seventh antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the seventh antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, fourth, fifth, and sixth antigens. 53. The immunogenic composition of clause 52, wherein the first, second, third, fourth, fifth, sixth and seventh RNA polynucleotides are formulated in a lipid nanoparticle. 54. The immunogenic composition of clause 53, wherein the first, second, third, fourth, fifth, sixth and seventh RNA polynucleotides are formulated in a single lipid nanoparticle. 55. The immunogenic composition of any preceding clause further comprising: (viii) an eighth RNA polynucleotide having an open reading frame encoding an eighth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the eighth antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, fourth, fifth, sixth and seventh antigens. 56. The immunogenic composition of clause 55, wherein the first, second, third, fourth, fifth, sixth, seventh and eighth RNA polynucleotides are formulated in a lipid nanoparticle. 57. The immunogenic composition of clause 56, wherein the first, second, third, fourth, fifth, sixth, seventh and eighth RNA polynucleotides are formulated in a single lipid nanoparticle. 58. The immunogenic composition of any preceding clause further comprising: (v) a fifth RNA polynucleotide having an open reading frame encoding a fifth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fifth antigen is from influenza virus but is from a different strain of influenza virus to the first, second, third, and fourth antigens. 59. The immunogenic composition of clause 58, wherein the first, second, third, fourth, and fifth RNA polynucleotides are formulated in a lipid nanoparticle. 60. The immunogenic composition of clause 59, wherein the RNA polynucleotides are present in about equal ratios. 61. The immunogenic composition of any preceding clause, wherein each RNA polynucleotide comprises a modified nucleotide. 62. The immunogenic composition of clause 61, wherein the modified nucleotide is selected from the group consisting of pseudouridine, 1-methylpseudouridine, 2-thiouridine, 4′- thiouridine, 5-methylcytosine, 2-thio-1-methyl-1-deaza-pseudouridine, 2-thio-1-methyl- pseudouridine, 2-thio-5-aza-uridine, 2-thio-dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4-methoxy-2-thio-pseudouridine, 4-methoxy-pseudouridine, 4-thio- 1-methyl-pseudouridine, 4-thio-pseudouridine, 5-aza-uridine, dihydropseudouridine, 5- methoxyuridine, and 2′-O-methyl uridine. 63. The immunogenic composition of any preceding clause, wherein each RNA polynucleotide comprises a 5′ terminal cap, a 5’ UTR, a 3’UTR, and a 3′ polyadenylation tail. 64. The immunogenic composition of clause 63, wherein the 5′ terminal cap comprises: . 65.
Figure imgf000178_0001
the 5’ UTR comprises SEQ ID NO: 1. 66. The immunogenic composition of clause 63, wherein the 3’ UTR comprises SEQ ID NO: 2. 67. The immunogenic composition of clause 63, wherein the 3′ polyadenylation tail comprises SEQ ID NO: 3. 68. The immunogenic composition of any preceding clause, wherein the RNA polynucleotide has an integrity greater than 85%. 69. The immunogenic composition of any preceding clause, wherein the RNA polynucleotide has a purity of greater than 85%. 70. The immunogenic composition of any preceding clause, wherein the lipid nanoparticle comprises 20-60 mol % ionizable cationic lipid, 5-25 mol % neutral lipid, 25-55 mol % cholesterol, and 0.5-5 mol % PEG-modified lipid. 71. The immunogenic composition of any preceding clause, wherein the cationic lipid comprises: .
Figure imgf000179_0001
72. The clause, wherein the PEG-modified lipid
Figure imgf000179_0002
comprises: .
Figure imgf000179_0003
73. The first antigen is HA from influenza A subtype H1 or an immunogenic fragment or variant thereof and the second antigen is HA from a different H1 strain to the first antigen or an immunogenic fragment or variant thereof. 74. The immunogenic composition of any preceding clause, wherein the first and second antigens are HA from influenza A subtype H3 or an immunogenic fragment or variant thereof and wherein both antigens are derived from different strains of H3 influenza virus. 75. The immunogenic composition of any preceding clause, wherein the first and second antigens are HA from influenza A subtype H1 or an immunogenic fragment or variant thereof and the third and fourth antigens are from influenza A subtype H3 or an immunogenic fragment or variant thereof and wherein the first and second antigens are derived from different strains of H1 virus and the third and fourth antigens are from different strains of H3 influenza virus. 76. The immunogenic composition of any preceding clause, wherein at least the first and second RNA polynucleotides are formulated in a single lipid nanoparticle. 77. The immunogenic composition of any preceding clause, wherein the first and second RNA polynucleotides are formulated in a single lipid nanoparticle. 78. The immunogenic composition of any preceding clause, wherein the first, second, and third RNA polynucleotides are formulated in a single lipid nanoparticle. 79. The immunogenic composition of any preceding clause, wherein the first, second, third, and fourth RNA polynucleotides are formulated in a single LNP. 80. The immunogenic composition of any one of clauses 36-75, wherein each of the RNA polynucleotides is formulated in a single LNP, wherein each single LNP encapsulates the RNA polynucleotide encoding one antigen. 81. The immunogenic composition of clause 80, wherein the first RNA polynucleotide is formulated in a first LNP; and the second RNA polynucleotide is formulated in a second LNP. 82. The immunogenic composition of clause 80, wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; and the third RNA polynucleotide is formulated in a third LNP. 83. The immunogenic composition of clause 80, wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; and the fourth RNA polynucleotide is formulated in a fourth LNP. 84. The immunogenic composition of clause 80, wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; and the fifth RNA polynucleotide is formulated in a fifth LNP. 85. The immunogenic composition of clause 80, wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; the fifth RNA polynucleotide is formulated in a fifth LNP; and the sixth RNA polynucleotide is formulated in a sixth LNP. 86. The immunogenic composition of clause 80, wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; the fifth RNA polynucleotide is formulated in a fifth LNP; the sixth RNA polynucleotide is formulated in a sixth LNP; and the seventh RNA polynucleotide is formulated in a seventh LNP. 87. The immunogenic composition of clause 80, wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; the fourth RNA polynucleotide is formulated in a fourth LNP; the fifth RNA polynucleotide is formulated in a fifth LNP; the sixth RNA polynucleotide is formulated in a sixth LNP; the seventh RNA polynucleotide is formulated in a seventh LNP; and the eighth RNA polynucleotide is formulated in an eighth LNP. 88. The immunogenic composition of any preceding clause, for use in the eliciting an immune response against influenza. 89. A method of eliciting an immune response against influenza disease, comprising administering an effective amount of an immunogenic composition according to any one of clauses 36-79. 90. A method of purifying an RNA polynucleotide synthesized by in vitro transcription, comprising ultrafiltration and diafiltration. 91. The method according to clause 90, wherein the method does not comprise a chromatography step. 92. The method according to clause 90, wherein the purified RNA polynucleotide is substantially free of contaminants comprising short abortive RNA species, long abortive RNA species, double- stranded RNA (dsRNA), residual plasmid DNA, residual in vitro transcription enzymes, residual solvent and/or residual salt. 93. The method according to clause 90, wherein the residual plasmid DNA is ≤ 500 ng DNA/mg RNA. 94. The method according to clause 90, wherein purity of the purified mRNA is between about 60% and about 100%. 95. The method according to clause 90, further comprising encapsulating the RNA polynucleotide in a lipid nanoparticle. 96. The method according to clause 95, wherein the LNPs are buffer exchanged and concentrated via flat sheet cassette membranes.

Claims

CLAIMS 1. An composition comprising: (i) a first ribonucleic acid (RNA) polynucleotide comprising an open reading frame encoding a first antigen, said antigen comprising at least one influenza A virus antigenic polypeptide or an immunogenic fragment thereof, and (ii) a second RNA polynucleotide comprising an open reading frame encoding a second antigen, said second antigen comprising at least one influenza B virus antigenic polypeptide or an immunogenic fragment thereof, wherein the first and second RNA polynucleotides are formulated in a lipid nanoparticle (LNP), wherein the amount of second RNA polynucleotide is greater than the amount of the first RNA polynucleotide.
2. The composition of claim 1, wherein the first and second antigens comprise hemagglutinin (HA), or an immunogenic fragment or variant thereof.
3. The immunogenic composition of claim 1 or 2 wherein the first and second antigens each comprise an HA, or an immunogenic fragment thereof, that are from different subtypes of influenza virus.
4. The composition of any one of claims 1-3, wherein the ratio of the first RNA polynucleotide to the second RNA polynucleotide is 1: greater than 1.
5. The composition of any one of claims 1-4, wherein the ratio of the first RNA polynucleotide to the second RNA polynucleotide is 1:2.
6. The composition of any one of claims 1-5, wherein the ratio of the first RNA polynucleotide to the second RNA polynucleotide is 1:4.
7. The composition of any one of claims 1-6, further comprising: (iii) a third RNA polynucleotide comprising an open reading frame encoding an antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the third antigen is from an influenza virus different from the strain of influenza virus of both the first and second antigens.
8. The composition of claim 7, wherein the first, second and third RNA polynucleotides are formulated in a lipid nanoparticle.
9. The immunogenic composition of claim 5, further comprising: (iv) a fourth RNA polynucleotide comprising an open reading frame encoding a fourth antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof, wherein the fourth antigen is from influenza virus but is from a different strain of influenza virus to the first, second and third antigens.
10. The composition of claim 9, wherein the first, second, third, and fourth RNA polynucleotides are formulated in a lipid nanoparticle.
11. The composition of any one of claims 1-10, wherein the RNA polynucleotides are not present in equal ratios.
12. The immunogenic composition of any one of claims 1-11, wherein each RNA polynucleotide comprises a modified nucleotide.
13. The composition of claim 12, wherein the modified nucleotide is selected from the group consisting of pseudouridine, 1-methylpseudouridine, 2-thiouridine, 4′-thiouridine, 5- methylcytosine, 2-thio-1-methyl-1-deaza-pseudouridine, 2-thio-1-methyl-pseudouridine, 2- thio-5-aza-uridine, 2-thio-dihydropseudouridine, 2-thio-dihydrouridine, 2-thio-pseudouridine, 4-methoxy-2-thio-pseudouridine, 4-methoxy-pseudouridine, 4-thio-1-methyl-pseudouridine, 4-thio-pseudouridine, 5-aza-uridine, dihydropseudouridine, 5-methoxyuridine, and 2′-O- methyl uridine.
14. The composition of any one of claims 1-14, wherein each RNA polynucleotide comprises a 5′ terminal cap, a 5’ UTR, a 3’UTR, and a 3′ polyadenylation tail.
15. The composition of claim 14, wherein the 5′ terminal cap comprises: .
16.
Figure imgf000183_0001
SEQ ID NO: 1.
17. The composition of claim 14, wherein the 3’ UTR comprises SEQ ID NO: 2.
18. The composition of claim 14, wherein the 3′ polyadenylation tail comprises SEQ ID NO: 3.
19. The composition of any one of claims 1-18, wherein the RNA polynucleotide has an integrity greater than 85%.
20. The composition of any one of claims 1-19, wherein the RNA polynucleotide has a purity of greater than 85%.
21. The composition of any one of claims 1-20, wherein the lipid nanoparticle comprises 20-60 mol % ionizable cationic lipid, 5-25 mol % neutral lipid, 25-55 mol % cholesterol, and 0.5-5 mol % PEG-modified lipid.
22. The composition of any one of claims 1-21, wherein the cationic lipid comprises: .
23. The composition of any one of claims 1-22, wherein the PEG-modified lipid comprises: .
24.
Figure imgf000184_0001
A subtype H1 or an immunogenic fragment or variant thereof and the second antigen is HA from a different H1 strain to the first antigen or an immunogenic fragment or variant thereof.
25. The composition of any one of claims1-24, wherein the first and second antigens are HA from influenza A subtype H3 or an immunogenic fragment or variant thereof and wherein both antigens are derived from different strains of H3 influenza virus.
26. The composition of any one of claims9-25, wherein the first and second antigens are HA from influenza A subtype H1 or an immunogenic fragment or variant thereof and the third and fourth antigens are from influenza A subtype H3 or an immunogenic fragment or variant thereof and wherein the first and second antigens are derived from different strains of H1 virus and the third and fourth antigens are from different strains of H3 influenza virus.
27. The composition of any one of claims 1-26, wherein at least the first and second RNA polynucleotides are formulated in a single lipid nanoparticle.
28. The composition of any one of claims 1-27, wherein the first and second RNA polynucleotides are formulated in a single lipid nanoparticle.
29. The composition of any one of claims 7-28, wherein the first, second, and third RNA polynucleotides are formulated in a single lipid nanoparticle.
30. The composition of any preceding claim, wherein the first, second, third, and fourth RNA polynucleotides are formulated in a single LNP.
31. The composition of any one of claims 1-26, wherein each of the RNA polynucleotides is formulated in a single LNP, wherein each single LNP encapsulates the RNA polynucleotide encoding one antigen.
32. The composition of claim 31, wherein the first RNA polynucleotide is formulated in a first LNP; and the second RNA polynucleotide is formulated in a second LNP.
33. The composition of claim 31, wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; and the third RNA polynucleotide is formulated in a third LNP.
34. The composition of claim 31, wherein the first RNA polynucleotide is formulated in a first LNP; the second RNA polynucleotide is formulated in a second LNP; the third RNA polynucleotide is formulated in a third LNP; and the fourth RNA polynucleotide is formulated in a fourth LNP.
35. The composition of any one of claims 1-34, for use in the eliciting an immune response against influenza in a subject.
36. A method of eliciting an immune response against influenza disease in a subject, comprising administering an effective amount of a composition according to any one of claims 1-35.
37. A method of producing an RNA polynucleotide-encapsulated lipid nanoparticle (LNP), the method comprises purifying an RNA polynucleotide comprising an open reading frame encoding a first antigen, said antigen comprising at least one influenza virus antigenic polypeptide or an immunogenic fragment thereof through ultrafiltration and diafiltration; formulating the purified RNA polynucleotide in an LNP, wherein the LNP is buffer exchanged and concentrated via flat sheet cassette membranes.
38. The method according to claim 37, wherein the method does not comprise a chromatography step or hollow fiber membranes.
39. The method according to claim 37, wherein the purified RNA polynucleotide is substantially free of contaminants comprising short abortive RNA species, long abortive RNA species, double- stranded RNA (dsRNA), residual plasmid DNA, residual in vitro transcription enzymes, residual solvent and/or residual salt.
40. The composition according to any one of claims 1-39, wherein the LNP comprises a structural lipid selected from the group consisting of: cholesterol, fecosterol, sitosterol, β- sitosterol, ergosterol, campesterol, stigmasterol, brassicasterol, tomatidine, ursolic acid, alpha-tocopherol, and mixtures thereof.
41. The composition according to any one of claims 1-40, wherein the LNP comprises an N:P ratio of from about 2:1 to about 30:1.
42. The composition according to any one of claims 1-39, wherein the LNP comprises a β- sitosterol, campesterol, stigmasterol, cholesterol or any combination thereof.
43. The composition according to any one of claims 1-39, wherein the LNP comprises β- sitosterol and cholesterol.
44. The composition according to any one of claims 1-39, wherein the LNP comprises β- sitosterol and cholesterol having an N:P ratio of at least 5.
45. The composition according to any one of claims 1-39, wherein the LNP comprises β- sitosterol and cholesterol having an N:P ratio of at least 6.
46. The composition according to any one of claims 1-39, wherein the LNP comprises β- sitosterol and cholesterol having an N:P ratio of 10.
47. The composition according to any one of claims 1-46, wherein the LNP comprises β- sitosterol and cholesterol in a ratio of 6:4 (w/w).
48. The composition according to any one of claims 1-46, wherein the LNP comprises β- sitosterol and cholesterol in a ratio of 5:5 (w/w).
49. The composition according to any one of claims 1-46, wherein the LNP comprises β- sitosterol and cholesterol in a ratio of 4:6 (w/w).
50. The composition according to any one of claims 1-51, wherein the lipid nanoparticle comprises about 30 mol % to about 60 mol % one or more ionizable lipids, about 0 mol % to about 30 mol % one or more non-cationic helper lipids, about 18.5 mol % to about 48.5 mol % structural component, and about 0 mol % to about 10 mol % one or more PEG-lipids.
51. The composition according to any one of claims 1-49, wherein the percentage of intact mRNA encapsulated in the LNP is at least 80%.
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