WO2024165721A1 - Squaramide-modified adeno-associated virus vectors - Google Patents
Squaramide-modified adeno-associated virus vectors Download PDFInfo
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- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
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- A61K47/00—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
- A61K47/50—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
- A61K47/69—Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the conjugate being characterised by physical or galenical forms, e.g. emulsion, particle, inclusion complex, stent or kit
- A61K47/6901—Conjugates being cells, cell fragments, viruses, ghosts, red blood cells or viral vectors
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
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- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D309/00—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings
- C07D309/02—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings having no double bonds between ring members or between ring members and non-ring members
- C07D309/08—Heterocyclic compounds containing six-membered rings having one oxygen atom as the only ring hetero atom, not condensed with other rings having no double bonds between ring members or between ring members and non-ring members with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D309/10—Oxygen atoms
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- C07K2/00—Peptides of undefined number of amino acids; Derivatives thereof
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/85—Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
- C12N15/86—Viral vectors
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- C12N2750/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssDNA viruses
- C12N2750/00011—Details
- C12N2750/14011—Parvoviridae
- C12N2750/14111—Dependovirus, e.g. adenoassociated viruses
- C12N2750/14141—Use of virus, viral particle or viral elements as a vector
- C12N2750/14143—Use of virus, viral particle or viral elements as a vector viral genome or elements thereof as genetic vector
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- C12N2750/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssDNA viruses
- C12N2750/00011—Details
- C12N2750/14011—Parvoviridae
- C12N2750/14111—Dependovirus, e.g. adenoassociated viruses
- C12N2750/14141—Use of virus, viral particle or viral elements as a vector
- C12N2750/14145—Special targeting system for viral vectors
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- C12N2810/00—Vectors comprising a targeting moiety
- C12N2810/40—Vectors comprising a peptide as targeting moiety, e.g. a synthetic peptide, from undefined source
Definitions
- the present invention relates to adeno-associated virus (AAV) vectors modified by the covalent coupling of a squarate ester with a ligand or functional moiety and with a primary amino group of an amino acid residue of the capsid of the AAV vectors.
- AAV vectors are useful in transducing a cell, especially for gene therapy.
- Gene therapy is based on the genetic modification of cells to produce a therapeutic effect by the delivery of nucleic acid into patient's cells.
- gene therapy can be used to treat inherited or acquired diseases.
- AAV vectors have proven to be reliable, efficient, versatile, and safe tools to deliver a transgene of interest to a variety of tissues.
- AAV vectors present the advantage of having a relatively broad tropism, a high transduction efficacy, a persistent episomal expression, and a high safety profile, in particular because wild-type AAV is not associated with any human diseases.
- AAV vectors capable of avoiding immune detection were conducted or are ongoing for several types of diseases. Nevertheless, certain trials have shown some limitations of these AAV vectors including immunogenicity, unselective distribution, and reduced therapeutic index.
- humoral immunity can preexist to certain AAV serotypes, especially AAV of serotype 2. Therefore, preexisting anti-AAV neutralizing antibodies can preclude transduction in targeted tissues, resulting in a lack of efficacy, especially upon systemic administration.
- it is necessary to re- administer the AAV vector to complete the treatment it can be precluded by the appearance of neutralizing antibodies following the first administration. Consequently, AAV vectors capable of avoiding immune detection would be highly desirable.
- AAV vectors Another limitation of AAV vectors is linked to their broad tropism. Indeed, the broad distribution of AAV vectors leads to transgene expression in tissues other than targeted ones, thus lacking specificity. This can lead to reduced therapeutic index. Indeed, high doses of vectors may be required to achieve therapeutic efficacy in a given tissue. Such high doses pose a challenge not only for vector production but also by increasing the risk of immune response. Consequently, AAV vectors capable of ensuring cell- specific transduction would be highly desirable. [0007] Various strategies have been explored in order to improve AAV vectors in order to evade the immune system and enhance cell transduction and cell specificity, especially by modifying the capsid proteins of the vectors.
- Such modifications of capsid proteins can be achieved by introducing mutations in surface-exposed amino acid residues of capsids of AAV vectors.
- chemical modification of viral capsids has been proposed in order to add a specific ligand on the capsid or to mask certain exposed amino acids.
- Such chemical modifications can be obtained, for example, by introducing a non-natural amino acid residue comprising a reactive functional group into the capsid proteins and then selectively coupling a ligand by orthogonal reaction with said reactive functional group.
- Another strategy is to perform a direct chemical modification on the viral capsid, without any preliminary mutation of the capsid proteins.
- WO2017/212019 provides surface modified AAV vectors obtained by covalently coupling a ligand bearing a certain isothiocyanate group to an amino group present in an amino acid residue of the capsid proteins of the AAV, leading to improved gene transfer into specific cells. Additionally, the modification of tyrosine residues of the AAV capsid is reported in WO2021/005210, which provides a method of chemically modifying tyrosine residues of the AAV capsid in order to modify immunogenicity of AAV vectors.
- WO2022/096681 provides surface modified vectors obtained by reaction of a compound comprising a lactam (e.g., ⁇ -lactam) with an amino group present in an amino acid residue of the capsid proteins of the AAV.
- a lactam e.g., ⁇ -lactam
- the current strategies to modify AAV vectors still suffer from several drawbacks. For example, in certain contexts, it has been observed that coupling chemistries comprising certain isothiocyanate groups are often too reactive and thus susceptible to significant self-coupling reactions.
- the present invention relates to an adeno-associated virus (AAV) vector particle comprising a squaramide linker moiety resulting from the reaction of a squarate ester with a primary amino group present within the capsid of the AAV vector (e.g., amino group of a lysine side chain).
- AAV adeno-associated virus
- the present invention refers to an adeno-associated virus (AAV) vector particle comprising a moiety of formula (II):
- N* is a nitrogen atom of a primary amino group from a surface-exposed amino acid residue of a capsid polypeptide from the AAV vector; ---- represents the point of attachment to the AAV vector's capsid; and R L -NH- is a functional moiety, as defined and described in classes and subclasses in the present invention, comprising a nitrogen containing group -NH-.
- the AAV vector particles defined according to the present invention comprise a squaramide linker of formula (I): wherein the functional moiety R L -NH- and an amino acid residue of a capsid from the AAV vector, of the AAV vector particles disclosed in the present invention, are covalently linked to form the squaramide linker of formula (I); and wherein N is a nitrogen atom belonging to the functional moiety, which is thus indicated as R L -NH- as defined in the present invention, and wherein N* is a nitrogen atom of a primary amino group from a surface-exposed amino acid residue of a capsid polypeptide from the AAV vector.
- the present invention relates to technologies for and/or methods of manufacturing a provided AAV vector particle.
- the surface-exposed amino acid residue comprising at least one primary amino group is lysine.
- N* is a nitrogen atom of an amino group of a lysine residue of the AAV vector's capsid.
- the functional moiety R L -NH- includes a group -NH- which forms part of the squaramide linker of formula (I) as defined in the present invention, and a functional group R L comprising a steric shielding agent, a labelling agent, a cell-type specific ligand, a drug moiety and combinations thereof.
- R L -NH- is a functional moiety comprising or consisting of a group selected from a steric shielding agent, a labelling agent, a cell-type specific ligand, a drug moiety and combinations thereof.
- R L -NH- comprises a labeling agent.
- the labeling agent comprises or is a fluorescent dye such as fluoroalanine, fluorescein, rhodamine, boron-dipyrromethene (Bodipy ® ) dyes, and Alexa fluor ® , or a radionuclide.
- R L -NH- comprises a cell-type specific ligand selected from the group consisting of saccharides, hormones, peptides, glycosylated peptides, glycoproteins, proteins or functionally active fragments thereof, membrane receptors or functionally active fragments thereof, antibodies or functionally active fragments thereof, aptmers, nucleic acids or peptide aptamers, vitamins, and drugs moieties.
- R L -NH- comprises a steric shielding agent selected from the group consisting of polyethylene glycol, pHPMA, and polysaccharides.
- the functional moiety R L -NH- comprises a group Z and one or more spacers L
- the adeno-associated virus (AAV) vector particle comprises a moiety represented by formula (IIa): Wherein N*, ------, Z and L, are as defined and described in classes and subclasses in the present invention.
- the functional moiety R L -NH- comprises a group Z and one or more spacers L, wherein Z is H or comprises a cell-type specific ligand selected from the group consisting of saccharides, hormones, peptides, glycosylated peptides, proteins, glycoproteins, or functionally active fragments thereof, membrane receptors or functionally active fragments thereof, antibodies or functionally active fragments thereof, aptmers, nucleic acids or peptide aptamers, vitamins, and drugs moieties.
- the functional moiety R L -NH- does not comprise one or more spacers L and the functional moiety R L -NH- consists of a group Z-NH-.
- the functional moiety R L -NH- comprises one or more groups Z and one or more spacers L. In some aspects, the functional moiety R L -NH- comprises 1 to 3 groups Z, each of said groups Z linked to one or more spacers L. [0024] In some aspects, Z is a saccharide. In other aspects Z is a peptide. [0025] In some aspects, Z is or comprises a saccharide selected from the group consisting of monosaccharides, oligosaccharides, polysaccharides and derivatives thereof.
- the saccharide is selected from the group consisting of mannose, galactose, N-acetylglucosamine, fucose, fructose, glucose, xylose, trehalose, desosamine, glucuronic acid, S6-galactose, S6-N-acetylgalactosamine, P6-mannose, P6-glucose, sialic acid, S1-fructose and P1-fructose.
- the saccharide is selected from the group consisting of mannose, fructose, glucose, xylose, trehalose, glucuronic acid, S6-galactose, S6-N-acetylgalactosamine, P6-mannose, P6-glucose, sialic acid and P1-fructose, more preferably mannose.
- Z is or comprises a linear or a cyclic peptide, wherein said peptide may be peptide featuring biological activity, in particular a blood brain barrier penetrating peptide (BBPs).
- BBPs blood brain barrier penetrating peptide
- the peptide is a blood brain barrier (BBB) shuttle peptide (also referred as a BBB-penetrating peptide) with an enhanced transduction activity across the blood brain barrier.
- BBB shuttle peptides have the ability to cross the BBB and are thus molecules capable of transporting a variety of cargoes into the brain parenchyma without disrupting the BBB integrity. Therefore, the BBB shuttle peptide have the potential to increase the ability of AAV to cross the BBB and enhance brain transduction, especially in neuronal cells.
- the BBB shuttle peptide is selected from the group consisting of a peptide THR or a peptide with a RGD motif, including a cyclic RGD peptide.
- the peptide THR is capable of binding to and internalizing with the human transferrin receptor (hTfR), as described in Lee et al., 2004 (Eur J Biochem. 2001 Apr;268(7):2004-12. doi: 10.1046/j.1432-1327.2001.02073.x. PMID: 11277922) and the international patent application published under No. WO02/44329 (A2).
- BBB shuttle peptides have also been described in Sánchez-Navarro et al., 2022 (Pharmaceutics.2022 Sep 5;14(9):1874. Doi: 10.3390/pharmaceutics14091874.
- PMID 36145622; PMCID: PMC9505527
- the spacer group L comprises one or more groups selected from the group consisting of an arylene or a heteroarylene group Ar; an optionally substituted group comprising saturated or unsaturated, linear or branched C 1 -C 40 hydrocarbon chains; an alkylene amine containing group; an acyl containing group; an amino acid; an alkyl ether group such as an ethylene glycol or a propylene glycol group; a polyether such as a polyethylene glycol (PEG) or a polypropylene glycol (PPG), or a polyether of a branched polyol; a polyamide such as a ⁇ -alanine polymer; a vinylic polymer such as pHPMA; a polyester, such as PLGA; polymers of alkylene diamines; and combinations thereof.
- an arylene or a heteroarylene group Ar an optionally substituted group comprising saturated or unsaturated, linear or branched C 1 -C 40 hydrocarbon chains
- the spacer group L comprises one or more groups selected from the group consisting of an arylene or a heteroarylene group, an optionally substituted group comprising saturated or unsaturated, linear or branched, C 1 -C 40 hydrocarbon chains, a polyethylene glycol (PEG), a polypropylene glycol (PPG), an alkylene amine; an acyl group, an amino acid moiety, a polyether of a branched polyol, a ⁇ -alanine polymer, pHPMA, PLGA, polymers of alkylene diamines, and combinations thereof.
- PEG polyethylene glycol
- PPG polypropylene glycol
- an alkylene amine an alkylene amine
- an acyl group an amino acid moiety
- a polyether of a branched polyol a ⁇ -alanine polymer
- pHPMA pHPMA
- PLGA polymers of alkylene diamines, and combinations thereof.
- Z when Z is a peptide, Z is covalently linked to one C 1-6 alkylene group, or to a ⁇ -alanine moiety, or to a group Ar as defined herein, or to an acyl group, or to the squaramide moiety of formula (I), by an amide moiety or a bioisostere moiety thereof, wherein either the acyl group or the nitrogen atom of said amide moiety corresponds to, respectively, the acyl group of the C-terminal group of the peptide and to the nitrogen atom of the N-terminal group of the peptide.
- L comprises a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers. In some aspects, L comprises a polyethylene glycol (PEG), comprising 1 to 10 ethylene glycol monomers. In some aspects, the polyethylene glycol (PEG) is PEG1, PEG2, PEG3, PEG4, or PEG5.
- L comprises a ⁇ -alanine polymer, or a ⁇ -alanine moiety, comprising 1 to 40 ⁇ -alanine monomers or ⁇ -alanine units.
- the ⁇ -alanine polymer comprises 1 to 10, such as 1, 2, 3, 4, 5, 6, 7, 8, 8 or 10 ⁇ -alanine monomers.
- L comprises a polyethylene glycol (PEG) and a ⁇ -alanine polymer.
- L comprises a polyether of a branched polyol, such as a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol, more preferably a branched C 4 polyol.
- L comprises an amino acid moiety.
- amino acid refers to a molecule including both an amine group and a carboxylic acid group, including accordingly also, but not only, proteogenic and non-proteogenic amino acids.
- L comprises an arginine moiety, a ⁇ - alanine moiety.
- L comprises one or more arylene or a heteroarylene groups Ar.
- L comprises a C 1-6 alkylene group, which may be a linear C 1-6 alkylene group or a branched C 3-6 alkylene group, more preferably L comprises a -CH 2 - group or a branched C 4 alkylene group.
- L comprises a C 1-6 alkylenamine group, preferably -CH 2 -CH 2 -NH- group.
- L comprises a C 1-6 acyl group, preferably a -CH 2 -CH 2 -C(O)- group.
- the arylene or a heteroarylene group Ar is a bivalent aromatic radical (or bivalent aromatic moiety), i.e.
- said arylene or a heteroarylene group Ar is a 6- to 10-membered arylene group or a 5- or 12-membered heteroarylene group comprising one or more heteroatoms selected from the group consisting of N, O, S and Se.
- the arylene or the heteroarylene group Ar is a phenylene or pyridylene group, optionally comprising one or more substitutions.
- said arylene or heteroarylene group Ar comprises one or more substitutions selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 acyl and C 1- 6 alkoxy.
- Z is a saccharide or a peptide and L comprises a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers.
- Z is a saccharide or a peptide and L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers and an arylene or a heteroarylene group Ar, preferably wherein said PEG and Ar groups are covalently linked by an amide moiety or a bioisostere moiety thereof.
- PEG polyethylene glycol
- Z is a saccharide or a peptide and L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers, one or more C 1-6 alkylene groups and an arylene or a heteroarylene group Ar, preferably wherein said PEG and Ar groups are covalently linked by an amide moiety or a bioisostere moiety thereof, or wherein said PEG and C 1-6 alkylene group are covalently linked by an amide moiety or a bioisostere moiety thereof.
- PEG polyethylene glycol
- the functional moiety R L -NH- comprises 1 to 3 groups, Z; wherein Z is a saccharide or a peptide, and L comprises one or more polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers, one or more C 1-6 alkylene group, a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol, and an arylene or a heteroarylene group Ar; preferably wherein each Z is linked to a first C 1-6 alkylene group or to a PEG, being said first C 1-6 alkylene group linked to the group Z by an amide moiety, and being said PEG covalently linked to a second C 1-6 alkylene group by an amide moiety or a bioisostere moiety thereof; wherein said second C 1-6 alkylene group is linked to the branched C 3-12 polyol by an ether bond, and wherein the branched C 3-12 polyol is linked
- PEG polyethylene glyco
- the functional moiety R L -NH- comprises 1 to 3 groups, Z; wherein Z is a saccharide. In another aspect the functional moiety R L -NH- comprises 1 to 3 groups, Z; wherein each Z is independently a saccharide or a peptide.
- Z is a peptide and L comprises a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers and one or more C 1-6 alkylene groups; or one or more C 1-6 alkylenamine groups, or one or more C 1-6 acyl groups.
- PEG polyethylene glycol
- Z is a peptide and L comprises a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers.
- Z is a peptide and L comprises a ⁇ -alanine polymer comprising 1 to 40, preferably 1 to 10, ⁇ -alanine monomers and one or more C 1-6 alkylene groups, preferably a C 1-2 alkylene group, or one or more C 1-6 alkylenamine groups, preferably a - CH 2 -CH 2 -NH- group, or one or more C 1-6 acyl groups, preferably a -CH 2 -CH 2 -C(O)- group.
- Z is a peptide and L comprises a ⁇ -alanine polymer comprising 1 to 40, preferably 1 to 10, ⁇ -alanine monomers, one or more C 1-6 alkylene groups, preferably a C 1-2 alkylene group, or one or more C 1-6 alkylenamine groups, preferably a - CH 2 -CH 2 -NH- group, or one or more C 1-6 acyl groups, preferably a -CH 2 -CH 2 -C(O)- group, and an arylene or a heteroarylene group Ar; wherein said PEG and Ar group are covalently linked by an amide moiety or a bioisostere moiety thereof, or wherein said PEG and one C 1-6 alkylene group are covalently linked by an amide moiety or a bioisostere moiety thereof.
- Z is a peptide and L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers, one or more C 1-6 alkylene groups, preferably a C 1-2 alkylene group, or one or more C 1-6 alkylenamine groups, preferably a - CH 2 -CH 2 -NH- group, or one or more C 1-6 acyl groups, preferably a -CH 2 -CH 2 -C(O)- group; and an amino acid moiety, preferably an arginine moiety or a ⁇ -alanine moiety, more preferably an arginine moiety.
- PEG polyethylene glycol
- Z is a peptide and L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers, a ⁇ -alanine polymer comprising 1 to 40 ⁇ - alanine monomers, one or more C 1-6 alkylene groups, preferably a C 1-2 alkylene group, or one or more C 1-6 alkylenamine groups, preferably a -CH 2 -CH 2 -NH- group, or one or more C 1-6 acyl groups, preferably a -CH 2 -CH 2 -C(O)- group, and an amino acid moiety, preferably an arginine moiety or a ⁇ -alanine moiety, more preferably an arginine moiety.
- PEG polyethylene glycol
- the peptide Z and the spacer L are covalently linked by an amide moiety, for example and amide -N(R 1 )C(O)- , or a bioisostere moiety thereof; wherein R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl, Z-(OCH 2 –CH 2 )n–, Z-C(O)NH-(CH 2 )q–(OCH 2 -CH 2 )n–, and Z- NHC(O)–(CH 2 )q–(OCH 2 -CH 2 )n–, wherein q is selected from 1 to 3, n is selected from 0 to 40, and Z is as defined and described in classes and subclasses disclosed in the present invention; preferably R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl and Z-(
- L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers and an arylene or a heteroarylene group Ar, as defined in the present invention, wherein said PEG and Ar groups are covalently linked by an amide moiety, for example an amide -N(R 1 )C(O)-, or a bioisostere moiety thereof; or L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers, one or more C 1-6 alkylene groups and an arylene or a heteroarylene group Ar, as defined in the present invention, wherein said PEG and Ar groups are covalently linked by an amide moiety, for example an amide -N(R 1 )C(O)-, or a bioisostere moiety thereof or wherein said PEG and C 1-6 alkylene group are covalently linked by an amide moiety, , for example an amide -N(R 1 )C(O)-, or a bioiso
- the one or more spacer L is selected from the group consisting of L 1 , L 2 and L 3 and said AAV vector particle comprises a moiety selected from the group consisting of formula (IIa 1 ), (IIa 2 ), (IIa 3 ), (IIa 4 ), (IIa 5 ), (IIa 6 ), (IIa 7 ), (IIa 8 ), (IIa 9 ), (IIa 10 ), (IIa 11 ), (IIa 12 ), (IIa 13 ), (IIa 14 ), (IIa 15 ), (IIa 16 ), (IIa 17 ), (IIa 18 ), (IIa 19 ) and (IIa 20 ): wherein N*, ----, Z are as defined and described in classes and subclasses disclosed in the present invention and wherein L 1 is one or more groups selected from the group consisting of a polyethylene glycol (PEG), comprising 1 to 40 ethylene glyco
- L 3 is covalently linked to L 2 by one carbon atom of the arylene group or by one carbon atom or one heteroatom of the heteroarylene group; and wherein, L 1 and L 2 , or L 1 and L 3 are covalently linked by an amide moiety or a bioisostere moiety thereof; or wherein L 1 and L 3 covalently linked by an ether bond.
- the polyethylene glycol (PEG) is PEG1, PEG2, PEG3, PEG4, or PEG5.
- the ⁇ -alanine polymer comprises 1 to 10 ⁇ -alanine monomers
- L 2 comprises a phenylene group or a pyridylene group.
- L 3 is a C 1-3 alkylene, a -CH 2 -CH 2 -NH- group, a - CH 2 -CH 2 -C(O)- group or an aminoacid moiety, preferably an arginine moiety or a ⁇ -alanine moiety.
- L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers or a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers, or a mixture thereof
- L 2 is an arylene or a heteroarylene group Ar; L 1 and L 2 are covalently linked by an amide moiety or a bioisostere moiety thereof.
- L 1 and L 3 are covalently linked by an amide moiety or a bioisostere moiety thereof.
- L 3 is covalently linked to L 2 by one carbon atom of the arylene group or by one carbon atom or one heteroatom of the heteroarylene group.
- L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers or a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers, or a mixture thereof
- L 2 is an arylene or a heteroarylene group Ar
- L 3 one or more groups selected from the group consisting of an amino acid moiety, C 1-6 alkylene amine group, a C 1-6 alkylene acyl group and a group C 1-6 alkylene group; wherein L 1 and L 2 or L 1 and L 3 are covalently linked by an amide moiety, or a bioisostere moiety thereof.
- L 1 is a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol, and L 3 is a group C 1-6 alkylene; being L 1 and L 3 covalently linked by an ether bond.
- L 1 is a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol, and L 3 is a group C 1-6 alkylene; being L 1 and L 3 covalently linked by an amide moiety or a bioisostere moiety thereof.
- L 1 is a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol, and L 2 comprises an arylene or a heteroarylene group Ar; being L 1 and L 2 covalently linked by an amide moiety or a bioisostere moiety thereof.
- L 1 and the squaramide linker of formula (I) are covalently bonded to said arylene or a heteroarylene group Ar in positions orto, meta or para, or when L 2 comprises an arylene or a heteroarylene group Ar and L 3 is present, L 1 and L 3 are covalently bonded to said arylene or a heteroarylene group Ar in positions orto, meta or para.
- L 2 comprises an arylene or a heteroarylene group Ar and L 3 is a group C 1-6 alkylene
- L 3 and the squaramide linker of formula (I) are covalently bonded to said arylene or a heteroarylene group Ar in positions orto, meta or para.
- L 2 comprises an arylene or a heteroarylene group Ar and L 3 is a group C 1-6 alkylene
- one or more groups L 3 are covalently bonded to said arylene or a heteroarylene group Ar in positions orto, meta or para.
- L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers;
- L 2 comprises one or more arylene or a heteroarylene groups;
- L 3 is a C 1-6 alkylene group, L 3 is covalently linked to L 2 by one carbon atom of the arylene group or by one carbon atom or one heteroatom of the heteroarylene group; and
- L 1 and L 2 are covalently linked by an amide moiety or by a bioisostere moiety thereof.
- L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers;
- L 2 comprises one or more arylene or a heteroarylene groups;
- L 3 is a C 1-6 alkylene group, L 3 is covalently linked to L 2 by one carbon atom of the arylene group or by one carbon atom or one heteroatom of the heteroarylene group; and
- L 1 and L 3 are covalently linked by an amide moiety or by a bioisostere moiety thereof.
- L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers;
- L 2 comprises one or more arylene or a heteroarylene groups;
- L 3 is a C 1-6 alkylene group, L 3 is covalently linked to L 2 by one carbon atom of the arylene group or by one carbon atom or one heteroatom of the heteroarylene group; and
- L 1 and L 2 are covalently linked by an amide moiety or by a bioisostere moiety thereof or L 1 and L 3 are covalently linked by an amide moiety or by a bioisostere moiety thereof.
- Z is a saccharide and L 1 is or comprises a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, being Z and L 1 covalently linked by an ether bond.
- PEG polyethylene glycol
- Z is a peptide and L 3 is a C 1-6 alkylene group, being Z and the C 1-6 alkylene group covalently linked by an amide moiety or a bioisostere moiety thereof, for example an amide moiety N(R 1 )C(O)-, or a bioisostere moiety thereof, as defined in the claims and embodiments of the present specification.
- Z is a peptide
- L 1 is or comprises a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers and L 3 is an arginine derivative, being L 1 and L 3 covalently linked by an amide moiety or a bioisostere moiety thereof.
- PEG polyethylene glycol
- the AAV vector particle comprising a moiety of formula (II) is an AAV vector particle comprising a moiety selected from the group consisting of formula (IIb), (IIc), (IId), (IIe), (IIf), (IIg), (IIh), (IIj), (IIk), (IIm), (IIn), (IIp), (IIq), (IIr), (IIs), (IIt), (IIv), (IIw) and (IIx): wherein R a , R b and R c are each independently H or a group R’ : being at least one of R a , R b and R c a group R’, and wherein n and n’ are each independently selected from 1 to 40, mi and m2, are each independently 0, 1 or 2, m 3 and m 4 , m 5 and m 6 are each independently selected from 1 to 6, preferably 1, 2 or 3, and N*, -
- n is 3, 4 or 5;
- Z is or comprises a linear or a cyclic peptide, wherein the peptide may be a peptide featuring biological activity, preferably wherein the peptide is a blood brain barrier (BBB) shuttle peptide, more preferably a BBB shuttle peptide selected from the group consisting of a peptide THR or a peptide with a RGD motif, including a cyclic RGD peptide; or a saccharide, being the saccharide selected from the group consisting of monosaccharides, oligosaccharides, polysaccharides and derivatives thereof, preferably a saccharide selected from the group consisting of mannose, galactose, N-acetylglucosamine, fucose, fructose, glucose, xylose, trehalose, desosamine, glucuronic acid, S6-galactose, S6-N-acetylgalactosamine, P6
- the AAV vector particle is moiety selected from those of Table 1’ hereafter.
- the AAV vector is selected from the group consisting of AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, pseudotypes, chimeras, and variants thereof; preferably the AAV vector is selected from the group consisting of AAV2, AAV5, AAV8, and AAV9.
- the AAV vector comprises at least one transgene, and the transgene is optionally under control of a promoter.
- the AAV vector comprises at least one transgene comprising the cDNA from a GBA gene, preferably from a human GBA gene, and the transgene is optionally under control of a promoter.
- the invention also provides a pharmaceutical composition comprising an AAV vector particle according to the invention and at least one pharmaceutically acceptable vehicle.
- the invention also relates to an AAV vector particle according to the invention or a pharmaceutical composition according to the invention, for use as a diagnostic agent and/or a medicament, preferably in gene therapy.
- the invention relates to the use of an AAV vector particle according to the invention or a pharmaceutical composition according to the invention, as a diagnostic agent and/or a medicament, preferably in gene therapy.
- the invention provides a compound of formula (III): or a pharmaceutically acceptable salt thereof, wherein R 2 is selected from the group consisting of linear C 1-12 alkyl, branched C 3-12 alkyl, linear C 1-12 haloalkyl, branched C 3- 12 haloalkyl and benzyl,; and R L -NH- is a functional moiety as defined and described in classes and subclasses in the present invention.
- R 2 is methyl, ethyl or benzyl, preferably ethyl.
- the functional moiety R L -NH- comprises a group Z, one or more spacers L, and the compound of formula (III), or a pharmaceutically acceptable salt thereof, is represented by formula (Illa): wherein R 2 , Z and L are as defined and described in classes and subclasses in the present invention.
- the compound of formula (Illa), or a pharmaceutically acceptable salt thereof comprises one or more than one spacer L is selected from the group consisting of L 1 , L 2 and L 3 and, is selected from the group consisting of formula (Illa 1 ), (IIIa 2 ), (IIIa 3 ), (IIIa 4 ), (IIIa 5 ), (IIIa 6 ), (IIIa 7 ), (IIIa 8 ), (IIIa 9 ), (Illa 10 ), (IlIa 11 ), (IlIa 12 ), (IlIa 13 ), (IIIa 14 ), (IlIa 15 ), (IIIa 16 ), (IIIa 17 ), (IlIa 18 ), (IIIa 19 ) and (IIIa 20 ):
- R 2 , Z, L 1 , L 2 and L 3 are as defined and described in classes and subclasses in the present invention.
- the compound of formula (III) is a compound selected from the group consisting of formula (Illb) (IIIc), (IIId), (Ille), (I I If), (Illg), (Illh), (Illj), (Illk), (IIIm), (IIIn), (IIIp), (Illq), (Illr), (Ills), (lIlt), (IIIv), (IIIw) and (IIIx):
- R a , R b and R c , n, n’, m 1 , m 2 , m 3 , m 4 , Z, Ar, R 1 and R 2 are as defined and described in classes and subclasses disclosed in the present invention.
- the compounds of formula (III) are useful to obtain the AAV vector particles comprising a moiety of formula (II), as defined and described in classes and subclasses in the present invention.
- the invention also provides the use of a compound of formula (III), as defined and described in classes and subclasses in the present invention, to obtain a AAV vector particle comprising a moiety of formula (II), as defined and described in classes and subclasses in the present invention.
- the compounds of formula (III) according to the present invention comprise a squarate ester moiety of formula (IV): wherein R 2 is defined and described in classes and subclasses disclosed in the present invention, and wherein said squarate ester reacts, in suitable conditions, with the amino groups present in amino acid residue of the capsid of the AAV vector to form a squaramide linker of formula (I), as defined in the present disclosure.
- the invention also provides a method of synthesizing an AAV vector particle comprising a moiety of formula (II), as defined and described in classes and subclasses in the present invention, wherein said method comprises the steps of incubating the AAV vector with a compound of formula (III), as defined and described in classes and subclasses of the present description, in conditions suitable for reacting a squarate moiety of the compound of formula (III) with at least one amino group of an amino acid residue of the capsid of the AAV vector so as to form a squaramide linker of formula (I).
- DETAILED DESCRIPTION OF CERTAIN EMBODIMENTS DETAILED DESCRIPTION OF CERTAIN EMBODIMENTS
- the present disclosure relates to couplings that conjugate to amino acids of adeno-associated viruses (AAVs) using a squaramide linker of formula (I) as defined previously.
- AAVs adeno-associated viruses
- the present disclosure appreciates that not all coupling chemistries are effective for such conjugation.
- certain coupling chemistries require or are typically performed under conditions that may disrupt one or more structural or functional properties of the AAV (e.g., do not preserve AAV integrity).
- various coupling chemistries require or are typically performed under conditions that are not compatible with certain biochemical ligands, such as saccharides and/or (poly)peptides.
- some coupling strategies and conditions may favor self-coupling with another ligand molecule (inter- and/or intra-molecular coupling) rather than coupling with the AAV.
- another ligand molecule inter- and/or intra-molecular coupling
- coupling chemistries comprising certain isothiocyanate groups are often too reactive and thus susceptible to significant self-coupling reactions.
- Some coupling strategies include 2-step coupling reactions. However, in certain conditions, when only a first coupling reaction occurs, but not a second, then an AAV can be rendered immunogenic, for example due to non-natural chemical structures decorating the capsid surface.
- a one-step coupling chemistry has been described in, e.g., W02017/212019, which uses a certain isothiocyanate group that has been shown to be compatible in certain circumstances.
- W02017/212019 which uses a certain isothiocyanate group that has been shown to be compatible in certain circumstances.
- WO2022/096681 a potential problem with use of such isothiocyanate groups for coupling to AAV is that, for example, such coupling reactions results in a lipophilic linker that may form an immunogenic hapten.
- WO2022/096681 discloses surface modified vectors obtained by 1-step reaction of a compound comprising a lactam (e.g., ⁇ -lactam) with an amino group present in an amino acid residue of the capsid proteins of the AAV which solved the issues referred to self-coupling reactions and to the formation of immunogenic hapten.
- a lactam e.g., ⁇ -lactam
- a cross contamination of such molecules into other products for human use has to be excluded on a ppb-level (1). Therefore areas where ⁇ - lactams are handled have to be completely and comprehensively separated from other areas, where products are handled that will be used for humane use.
- the present disclosure therefore recognizes a particular remaining need to provide suitable coupling chemistries that i) are compatible with and maintain the integrity of a multiplicity of AAV serotypes, ii) are 1-step, iii) minimize self-coupling of the ligand, iv) do not result in an immunogenic linker, v) provide a synthetic process which provides less constraints for industrial scale-up and vi) are more flexible in terms of biochemical ligands and AAV serotypes.
- the squaramide moiety is a conformationally rigid cyclobutene ring derived from squaric acid (diketoclyclobutenediol) which benefits from unique physical and chemical properties which make it surprisingly useful for coupling a wide range of adeno- associated virus vectors to different type of ligands. Moreover, by selecting appropriate pH conditions the first and second substitution of the squarate can be controlled, allowing thus to provide a more selective substitution, resulting in a more flexible scaffold for coupling a diverse range of adeno-associated virus vectors to different type of ligands when compared to other solutions (linkers) known in the prior art.
- the present invention relates to an adeno-associated virus (AAV) vector particle comprising a moiety of formula (II):
- N*, - — and R L -NH- are as defined and described in classes and subclasses in the present invention.
- the present invention relates to adeno-associated virus (AAV) vector particle of formula (II) as defined and described herein, resulting from reaction of a squarate ester of formula (III): or a pharmaceutically acceptable salt thereof, with an amino group present within the capsid of the AAV vector (e.g., amino group of a lysine side chain), e.g., a modified AAV vector particle results from such reaction; wherein the group R 2 and the functional moiety R L -NH- are as defined and described in classes and subclasses in the present invention.
- AAV adeno-associated virus
- the functional moiety R L -NH- comprises a group Z, one or more spacers L, and the adeno-associated virus (AAV) vector particle comprises a moiety represented by formula (Ila), as disclosed herein, and results from the reaction of a compound of formula (Illa): or a pharmaceutically acceptable salt thereof, with an amino group present within the capsid of the AAV vector; wherein R 2 , Z and L are as defined and described in classes and subclasses in the present invention.
- AAV adeno-associated virus
- the functional moiety R L -NH- comprises a group Z, and more than one spacers L
- the moiety represented by formula (IIa) is selected from the group consisting of formula (IIa 1 ), (IIa 2 ) and (IIa 3 ), as disclosed herein
- the AAV vector particle comprising a moiety selected from the group consisting of formula (IIa 1 ), (IIa 2 ) and (IIa 3 ), results, respectively, from the reaction of a compound of formula (III) selected from the group consisting of formula (IIIa 1 ), (IIIa 2 ), (IIIa 3 ), (IIIa 4 ), (IIIa 5 ), (IIIa 6 ), (IIIa 7 ), (IIIa 8 ), (IIIa 9 ), (IIIa 10 ), (IIIa 11 ), (IIIa 12 ), (IIIa 13 ), (IIIa 14 ), (IIIa 15 ), (IIIa 16 ), (IIIa 17 ), (IIIa 18 ),
- the adeno-associated virus (AAV) vector particle comprising a moiety of formula (II), as disclosed herein results from the reaction of a compound of formula (III) selected from the group consisting of formula (Illb), (IIIc), (IIId), (Ille), (Illf), (Ille), (Illg), (Illh), (Illj), (Illk), (Illm), (Illn), (IIIp), (Illq), (Illr), (Ills), (IIlt), (IIIv), (IIIw) and (IIIx):
- the present invention relates to methods of modifying AAV vectors, especially by modification of at least one amino acid residue of the capsid of the AAV.
- the present invention provides methods of modifying an amino group of an amino acid residue of the capsid, preferably an amino group of a surface-exposed amino acid residue.
- AAV vectors suitable in the present invention may comprise or be derived from any natural or recombinant AAV serotype.
- a “serotype” is traditionally defined on the basis of a lack of cross-reactivity between antibodies to one virus as compared to another virus. Such cross-reactivity differences are usually due to differences in capsid protein sequences/antigenic determinants (e.g., due to VP1, VP2, and/or VP3 sequence differences of AAV serotypes).
- AAV includes various naturally occurring and synthetic serotypes.
- an AAV vector according to the present invention is selected from natural serotypes AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11 and AAV12; or pseudotypes, chimeras, and variants thereof.
- an AAV vector according to the present invention is of AAV phylogenetic Clade A, B, C, D, E, or F (see e.g., Gao et al., Clade of Adeno- Associated Viruses Are Widely Disseminated in Human Tissues. J. Virology. 2004).
- an AAV vector according to the present invention is of AAV phylogenetic Clade E.
- an AAV vector according to the present invention is of AAV phylogenetic Clade D.
- an AAV vector according to the present invention is of AAV phylogenetic Clade F.
- an AAV vector according to the present invention is of AAV phylogenetic Clade A. In some embodiments, an AAV vector according to the present invention is of AAV phylogenetic Clade C. In some embodiments, an AAV vector according to the present invention is of AAV phylogenetic Clade B. In some embodiments, an AAV vector according to the present invention is an AAV that does not belong to a classical phylogenetic Clade.
- the term “pseudotype” when referring to an AAV vector, or a “pseudotyped AAV vector”, refers to an AAV vector which comprises portions of an AAV genome, in particular the inverted terminal repeats (ITRs), of one AAV serotype packaged in the capsid of another AAV serotype.
- ITRs inverted terminal repeats
- These pseudotypes are denoted using a slash or a hyphen, so that “AAV2/5” or “AAV2-5” indicates an AAV vector comprising a serotype 2 genome, packaged into a serotype 5 capsid.
- an AAV vector is transcapsidated.
- transcapsidation approaches comprise transfection of combinations of AAV serotype helper plasmids to produce mosaic recombinant AAV capsid (see e.g., Rabinowitz et al. (2004), J. Virol. 78: 4421-4432).
- polyploid (when utilizing more than two parental AAV helpers) or haploid (when only using two) approaches are utilized.
- AAV capsids can be made from VP1/VP2 of one serotype and VP3 donated from a unique serotype, or combinations thereof.
- haploid AAVs have the potential to uniquely combine structural advantages of parental AAVs.
- haploid AAVs have demonstrated 1) synergistic effects in transduction, 2) unexpected new tropisms, and 3) the ability to escape Nab (see e.g., Chai et. al. (2019), Viruses 11: 1138)
- pseudotyped AAV vectors include, but are not limited to, AAV2/1, AAV2/2, AAV2/3, AAV2/4, AAV2/5, AAV2/6, AAV2/7, AAV2/8 and AAV2/9.
- chimera when referring to an AAV vector, or a “chimeric AAV vector”, refers to an AAV vector which comprises a capsid containing VP1, VP2 and VP3 proteins from at least two different AAV serotypes; or alternatively, which comprises VP1, VP2 and VP3 proteins, at least one of which comprises at least a portion from another AAV serotype.
- Examples of chimeric AAV vectors include, but are not limited to, AAV-DJ, AAV2G9, AAV2i8, AAV2i8G9, AAV8G9, and AAV9il.
- an AAV vector according to the present invention is selected from the group comprising or consisting of AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, AAV106.1/hu.37, AAV1 14.3/hu.4O, AAV127.2/hu.41, AAV127.5/hu.42, AAV128.1/hu.43,
- AAV2-15/rh.62 AAV223.1, AAV223.2, AAV223.4, AAV223.5, AAV223.6, AAV223.7, AAV2-3/rh.61, AAV24.1, AAV2-4/rh.5O, AAV2-5/rh.51, AAV2.5T, AAV27.3, AAV29.3/bb.l, AAV29.5/bb.2, AAV2G9, AAV3B, AAV3.1/hu.6, AAV3.1/hu.9, AAV3-1 l/rh.53, AAV3-3, AAV33.12/hu.l7, AAV33.4/hu.l5,
- AAV CLv-Kl AAV CLv-K3
- AAV CLv-K6 AAV CLv-L4, AAV CLv-L5
- AAVH 2 AAVH-5/hu.3, AAVH6, AAVhEl.l, AAVhErl.14, AAVhErl.16, AAVhErl.18, AAVhER1.23, AAVhErl.35, AAVhErl.36, AAVhErl.5, AAVhErl.7, AAVhErl.8, AAVhEr2.16, AAVhEr2.29, AAVhEr2.30, AAVhEr2.31, AAVhEr2.36, AAVhEr2.4, AAVhEr3.1, AAVLG-10/rh.40, AAVLG-4/rh.38, AAVLG-9/hu.39, AAVLG-9/hu.39, AAV-LK01, AAV-LK02, AAV-LK03, AAV-LK03, AAV-LK04, AAV-LK05, AAV-LK06, AAV-LK07, AAV-LK09, AAV-LK10, AAV-LK11, AAV-LK12, AAV
- AAV vectors variants include vectors which have been genetically modified, e.g., by substitution, deletion or addition of one or several amino acid residues in one or more of the capsid proteins VP1, VP2 and VP3.
- examples of such variants include, but are not limited to, AAV vectors comprising at least one Y-to-F, K- to-R, T-to-A, S-to-A and/or T-to-V mutation in any one or several of their VP1, VP2 and/or VP3 capsid proteins.
- variants include, but are not limited to, AAV1 with a Y73 IF mutation (or corresponding site in other AAV serotypes); AAV2 with one or more of Y272F, Y444F, T491V, Y500F, S662V and/or Y730F mutations (or corresponding sites in other AAV serotypes), such as AAV2 with Y444F mutation, AAV2 with Y444F+Y500F+Y730F mutations, AAV2 with Y272F+Y444F+Y500F+Y730F mutations, AAV2 with Y444F+ Y500F+Y730F+T491V mutations and AAV2 with Y272F+Y444F+Y500F+Y730F+T491V mutations; AAV3 with one or more of Y705F, Y731F and/or T492V mutations (or corresponding sites in other AAV serotypes)
- an AAV vector according to the present invention is selected from the group consisting of AAV2, AAV5, AAV8, and AAV9.
- an AAV vector according to the present invention is AAV2.
- an AAV vector according to the present invention is AAV5.
- an AAV vector according to the present invention is AAV8.
- an AAV vector according to the present invention is AAV9.
- an AAV vector according to the present invention is AAV2/2.
- an AAV vector according to the present invention is AAV2/5.
- an AAV vector according to the present invention is AAV2/8.
- an AAV vector according to the present invention is AAV2/9.
- an AAV vector according to the present invention has a capsid of an AAV serotype selected from the group consisting of serotypes 2, 5, 8 and 9. In some embodiments, an AAV vector according to the present invention has a capsid of AAV serotype 2. In some embodiments, an AAV vector according to the present invention has a capsid of AAV serotype 5. In some embodiments, an AAV vector according to the present invention has a capsid of AAV serotype 8. In some embodiments, an AAV vector according to the present invention has a capsid of AAV serotype 9.
- an AAV vector can target a large variety of cells, tissues, and organs.
- examples of cells targeted by AAV vectors encompass, but are not limited to, hepatocytes; cells of the retina; i.e. photoreceptors, retinal pigmented epithelium (RPE), Muller cells; muscle cells, i.e. myoblasts, satellite cells; cells of the central nervous system (CNS), i.e.
- neurons glial cells; cells of the heart; cells of the peripheral nervous system (PNS); osteoblasts; tumor cells; blood cells such as lymphocytes, monocytes, basophils, eosinophils, neutrophils, mast cells; hematopoietic cells including hematopoietic stem cells; cells of the inner ear (e.g., inner and/or outer hair cells, Hensen’s cells, Deiter’s cells, pillar cells, inner phalangeal cells, border cells, etc.); induced pluripotent stem cells (iPS) and the like.
- PNS peripheral nervous system
- osteoblasts tumor cells
- blood cells such as lymphocytes, monocytes, basophils, eosinophils, neutrophils, mast cells
- hematopoietic cells including hematopoietic stem cells
- cells of the inner ear e.g., inner and/or outer hair cells, Hensen’s cells, Deiter’s cells, pillar cells, inner
- examples of tissues and/or organs which can be targeted by AAV include eye, retina, liver, skeletal muscle, cardiac muscle, smooth muscle, ear, brain, spine, bone, connective tissue, heart, kidney, lung, lymph node, mammary gland, myelin, prostate, testes, thymus, thyroid, trachea, and the like.
- preferred cell types are hepatocytes, retinal cells, muscle cells, cells of the CNS, cells of the PNS, and hematopoietic cells.
- preferred tissue and/or organs are liver, muscle, heart, eye, and brain.
- AAV2 can be used to transduce the central nervous system (CNS), kidney, and photoreceptor cells
- AAV8 is effective for transducing the CNS, heart, liver, photoreceptor cells, retinal pigment epithelium (RPE), and skeletal muscle.
- an AAV can be produced by any methods known in the art, such as transient transfection in cell lines of interest e.g. in HEK293 cells as described in the Examples section.
- an AAV vector modified according to the present invention may be a recombinant AAV (rAAV) vector.
- wild-type (WT) AAVs have a single-stranded linear DNA genome about 5 kb long with two major open reading frames (ORFs) flanked by two inverted terminal repeats (ITRs).
- ORFs major open reading frames
- ITRs inverted terminal repeats
- the 5’ and 3’ ORFs encode replication, and capsid proteins, respectively.
- an ITR contains 145 nucleotides and serves as an AAV genome replication origin and packaging signal.
- viral ORFs are replaced by an exogenous gene expression cassette, while replication and capsid proteins are provided in trans.
- an AAV vector modified according to the present invention may comprise a double- stranded, self-complementary DNA genome (scAAV) (see e.g., Buie et al., Self- complementary AAV Virus (scAAV) Safe and Long-term Gene Transfer in the Trabecular Meshwork of Living Rats and Monkeys. Invest Opthalmol Vis Sci. 2010).
- scAAV self-complementary DNA genome
- a “recombinant AAV vector” or “rAAV” herein refers to an AAV wherein an exogenous nucleic acid sequence (e.g., a payload, e.g., a transgene) has been introduced in the viral genome.
- Said exogenous nucleic acid sequence may be of any type and is selected in view of the intended use of the AAV vector.
- said nucleic acid may comprise and/or may template any RNA or DNA sequence.
- a nucleic acid may preferably comprise a DNA sequence.
- rAAV vectors can be used as gene vectors for in vivo or in vitro applications.
- an exemplary rAAV vector modified according to the present invention may comprise an exogenous gene expression cassette replacing the viral ORFs and placed between two ITRs.
- an exogenous gene expression cassette may comprise a promoter sequence, a sequence encoding a gene of interest, and a terminator sequence.
- a promoter and a gene of interest are selected depending on a targeted tissue and/or organ and a known indication, e.g., for treatment and/or prevention of a disease state.
- a rAAV vector used in the present invention may comprise a DNA template for homologous recombination in cells.
- a rAAV can be used in combination with gene editing tools, for promoting homologous recombination in targeted cells, in vivo, in vitro, and/or ex vivo.
- a gene editing tools can be of any type, and encompass, without being limited to, CRISPR and its associated systems (Cas proteins, guide RNA), TALEN, Zinc Finger Nuclease, meganuclease, as well as RNA and/or DNA encoding said proteins.
- an AAV vector modified according to the present invention comprises at least one transgene, selected in view of the intended use of the AAV vector.
- transgene refers to a polynucleotide that is introduced into a cell and is capable of being transcribed into RNA and optionally, translated and/or expressed under appropriate conditions.
- a transgene confers a desired property to a cell into which it was introduced, or otherwise leads to a desired therapeutic or prophylactic outcome.
- the transgene may be incorporated, either entirely or partially, in the host cell’s genome, such as, e.g., via corrective gene editing using a CRISPR-based method, TALEN-based method, ZFN-based method or the like, in presence of appropriate means.
- a transgene may be transcribed into a molecule that mediates RNA interference (i.e., gene silencing), such as into a miRNA, siRNA, shRNA, piRNA, or the like.
- the at least one transgene comprises a cDNA encoding a protein or a fragment thereof.
- cDNA refers to complementary DNA and corresponds to a DNA molecule, usually synthesized from a single-stranded RNA (such as, e.g., a messenger RNA [mRNA] or a microRNA [miRNA]) template in a reaction catalyzed by a reverse transcriptase.
- a cDNA when obtained from reverse transcription of a mRNA, it does not comprise an entire gene coding from a protein, but only the coding sequence of said protein (i.e., exons without introns).
- a fragment of a cDNA can comprise a part of said cDNA encoding the N-terminal part or the C-terminal part of a protein.
- such fragment could be useful in cases of large cDNAs which cannot readily be carried by a single AAV vector, and would thus require the use of more than one vector, e.g., dual AAV vectors.
- a fragment of a cDNA can comprise a part of said cDNA encoding a functional and/or structural portion of a protein.
- a fragment of a cDNA can comprise a sequence encoding a functional and/or structural portion of an RNA molecule.
- such an RNA molecule may be a ribosomal RNA, transfer RNA, small nuclear RNA, small nucleolar RNA, micro RNA, long non-coding RNA, short interfering RNA, guide RNA, and/or any functional RNA species.
- the cDNA is from the GBA gene, preferably from the human GBA gene.
- Exemplary sequences of the GBA gene may be found in WO2022/096681.
- At least one transgene is under the control of at least one element which enhances the transgene target specificity and/or expression.
- elements which enhance the transgene target specificity and/or expression include, but are not limited to, promoters, post-transcriptional regulatory elements (PREs), polyadenylation (poly A) signal sequences, translational regulatory elements, targets for control by endogenous RNA processing pathways, upstream enhancers (USEs), CMV enhancers, and introns.
- At least one transgene is under the control of at least one promoter.
- transgenes in a target cell may require a specific promoter, including, but not limited to, a promoter that is species-specific, inducible, tissue-specific, temporally-specific, cell-specific, and/or cell cycle-specific.
- a promoter is a promoter having a tropism for a cell being targeted, i.e., a cell-specific promoter.
- a promoter drives expression of a transgene for a period of time in targeted tissues.
- Expression driven by a promoter may be for a period of 1 hour, 2 hours, 3 hours, 4 hours, 5 hours, 6 hours, 7 hours, 8 hours, 9 hours, 10 hours, 1 1 hours, 12 hours, 13 hours, 14 hours, 15 hours, 16 hours, 17 hours, 18 hours, 19 hours, 20 hours, 21 hours, 22 hours, 23 hours, 1 day, 2 days, 3 days, 4 days, 5 days, 6 days, 1 week, 8 days, 9 days, 10 days, 11 days, 12 days, 13 days, 2 weeks, 15 days, 16 days, 17 days, 18 days, 19 days, 20 days, 3 weeks, 22 days, 23 days, 24 days, 25 days, 26 days, 27 days, 28 days, 29 days, 30 days, 31 days, 1 month, 2 months, 3 months, 4 months, 5 months, 6 months, 7 months, 8 months, 9 months, 10 months, 11 months, 1 year, 13 months, 14 months, 15 months, 16 months,
- a promoter is a weak promoter for sustained expression of a transgene.
- promoters may be naturally occurring or non-naturally occurring.
- examples of promoters include, but are not limited to, viral promoters, plant promoters, and animal promoters (e.g., mammalian promoters).
- a promoter may be a human promoter.
- a promoter may be truncated relative to a reference. In some embodiments, a promoter may be mutated relative to a reference.
- a promoter may be one that drives expression in multiple tissues.
- a promoter which drives or promotes expression in multiple tissues includes, but is not limited to, human elongation factor la-subunit (EFla), cytomegalovirus (CMV) immediate-early enhancer and/or promoter, chicken ⁇ - actin (CBA) and its derivative CAG, ⁇ -glucuronidase (GUSB), and ubiquitin C (UBC).
- EFla human elongation factor la-subunit
- CMV cytomegalovirus
- CBA chicken ⁇ - actin
- GUSB ⁇ -glucuronidase
- UBC ubiquitin C
- tissue- or cell-specific expression elements can be used to restrict expression of a transgene to certain cell types.
- tissue and/or cell specific promoter may be a neuron specific promoter.
- tissue- or cell-specific expression elements for neurons include, but are not limited to, neuron-specific enolase (NSE) promoter, platelet- derived growth factor (PDGF) promoter, platelet-derived growth factor B-chain (PDGF- ⁇ ) promoter, synapsin (Syn) promoter, myelin basic protein (MBP) promoter, methyl- CpG binding protein 2 (MeCP2) promoter, Ca 2+ /calmodulin-dependent protein kinase II (CaMKII) promoter, metabotropic glutamate receptor 2 (mGluR2) promoter, neurofilament light (NFL) promoter, neurofilament heavy (NFH) promoter, ⁇ -globin minigene ⁇ 2 promoter, preproenkephalin (PPE) promoter, enkephalin (Enk) promoter and excitatory amino acid transporter
- NSE neuron-specific enolase
- a promoter is a ubiquitous promoter.
- a ubiquitous promoter can include, but is not limited to CMV, CBA (including its derivatives CAG, CBh, and the like), EF-la, PGK, UBC, GUSB (hGBp), and UCOE.
- a promoter is not tissue- or cell-specific.
- a promoter is an engineered promoter.
- a promoter is a promoter from a naturally-expressed protein.
- a promoter is a CAG promoter (e.g., comprising a CMV immediate early enhancer and a chicken ⁇ -actin promoter).
- a provided AAV vector is one that is modified by covalent coupling of at least squarate ester to at least one amino acid of the AAV capsid (e.g., to at least one capsid protein of the AAV vector).
- a typical AAV capsid comprises three capsid proteins, named VP1, VP2 and VP3.
- at least one squarate ester is covalently bound to at least one VP1 protein of an AAV vector.
- at least one squarate ester is covalently bound to at least one VP2 protein of the AAV vector.
- at least squarate ester moiety is covalently bound to at least one VP3 protein of the AAV vector.
- an AAV vector is modified by covalent coupling of at least one squarate ester to at least one surface-exposed amino acid residue of at least one capsid protein of the AAV vector.
- surface-exposed refers to an amino acid residue with a side chain that is at least partially exposed at the outer surface of the AAV vector.
- At least one squarate ester is covalently bound to at least one amino group of a surface-exposed amino acid residue of the capsid of an AAV vector.
- the at least one squarate ester is a compound of formula (III), or a particular embodiment thereof selected from the group consisting of a compound of formula (Illa), (Illal), (IIIa2), (Illb) and (IIIc), as defined and described in classes and subclasses in the present invention.
- amino group it is herein referred to a primary amine group (-NH 2 ) or a secondary amine group (-NH-), or salts thereof; preferably the amino group is a primary amino group.
- the amino group is from a lysine residue, preferably from a surface-exposed lysine residue of the capsid of the AAV vector.
- amino group of an amino acid residue of the capsid encompasses at least 1, 2, 3, 4, 5, 6, 7, 8, 9 10, 20, 30, 40, 50, 60, 70, 80, 90, 100 or more amino groups of amino acid residue(s).
- the AAV vector of the invention comprises a plurality of (e.g., several) modified amino acid residues in its capsid. In some embodiments, a plurality of (e.g., several) amino acid residues of a same capsid protein are modified. In some embodiments, a plurality of (e.g., several) amino acid residues present in different capsid proteins are modified.
- the invention relates to an adeno-associated virus (AAV) vector particle comprising a moiety of formula (II): wherein N* is a nitrogen atom of a primary amino group from a surface-exposed amino acid residue of a capsid polypeptide from the AAV vector;
- AAV adeno-associated virus
- R L -NH- is a functional moiety comprising or consisting of a cell-type specific ligand selected from the group consisting of saccharides, hormones, peptides, glycosylated peptides, proteins, glycoproteins, or functionally active fragments thereof, membrane receptors or functionally active fragments thereof, antibodies or functionally active fragments thereof, aptmers, nucleic acids or peptide aptamers, vitamins, and drugs moieties.
- the functional moiety R L -NH- comprises a group Z and one or more spacers L, wherein
- Z is H or comprises or consists in a cell-type specific ligand selected from the group consisting of saccharides, hormones, peptides, glycosylated peptides, proteins, glycoproteins, or functionally active fragments thereof, membrane receptors or functionally active fragments thereof, antibodies or functionally active fragments thereof, aptmers, nucleic acids or peptide aptamers, vitamins, and drugs moieties; preferably Z is or comprises a peptide or a saccharide.
- the peptide is or comprises a linear or a cyclic peptide, wherein said peptide may be a peptide featuring biological activity.
- the peptide is a blood brain barrier (BBB) shuttle peptide with an enhanced transduction activity across the blood brain barrier.
- BBB shuttle peptide is selected from the group consisting of a peptide THR or a peptide with a RGD motif, including a cyclic RGD peptide.
- L comprises one or more of a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers; a C 1-6 alkylene group; a C 1- 6 alkylene amine; a C 1-6 acyl group; a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers; a polyether of a branched C 3-12 polyol; an amino acid moiety, and an arylene or a heteroarylene group Ar.
- PEG polyethylene glycol
- the PEG and Ar groups are covalently linked by an amide moiety -N(R 1 )C(O)-, or a bioisostere moiety thereof, wherein R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl, Z-(OCH 2 -CH 2 )n-, Z-C(O)NH-(CH 2 )q- (OCH 2 -CH 2 )n-, and Z-NHC(O)-(CH 2 )q-(OCH 2 -CH 2 )n-, wherein q is selected from 1 to 3, n is selected from 0 to 40, and Z is as defined and described in classes and subclasses disclosed in the present invention; preferably R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl and Z-(OCH 2 -CH 2 )n- wherein n is selected from 1 to 40 and more preferably R 1
- L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers and one or more C 1-6 alkyl groups wherein said PEG and C 1-6 alkylene groups are covalently linked by an amide moiety or a bioisostere moiety thereof.
- PEG polyethylene glycol
- L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers and an arylene or a heteroarylene group Ar, preferably wherein said PEG and Ar groups are covalently linked by an amide moiety or a bioisostere moiety thereof.
- L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers, a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers and a C 1-6 acyl group.
- PEG polyethylene glycol
- L comprises a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers and a C 1-6 alkylene amine.
- L comprises a ⁇ - alanine polymer comprising 1 to 40 ⁇ -alanine monomers and an arylene or a heteroarylene group Ar.
- L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers and one or more C 1-6 alkyl groups wherein said PEG and C 1-6 alkyl groups are covalently linked by an ether bond.
- PEG polyethylene glycol
- L comprises a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers, one or more C 1-6 alkylene groups, an arylene or a heteroarylene group Ar, and a poly ether of a branched C 3-12 polyol, wherein the PEG and the C 1-6 alkylene groups are covalently linked by an amide moiety or a bioisostere moiety thereof; wherein the polyether of a branched C 3-12 polyol and the C 1-6 alkyl group are covalently linked by an ether bond; and wherein the polyether of a branched C 3-12 polyol and the Ar group are covalently linked by an amide moiety or a bioisostere moiety thereof.
- PEG polyethylene glycol
- the one or more spacer L is selected from the group consisting of L 1 , L 2 and L 3 , wherein L 1 is one or more groups selected from the group consisting of a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, or a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol and a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers, or a mixture thereof; L 2 comprises one or more arylene or a heteroarylene groups Ar, preferably L 2 comprises a phenylene or a pyridylene group; and L 3 is one or more groups selected from the group consisting of an amino acid moiety, preferably an arginine moiety, a ⁇ -alanine; C 1-6 alkylene amine group; a C 1-6 alkylene acyl group and a group C 1-6 alkylene; being said C 1-6 alkylene a linear
- the moiety of formula (II) is selected from the group consisting of formula (lIb), (lIc), (lId), (lIe), (Ilf), (Ilg), (Ilh) (Ilj), (Ilk), (Ilm), (Iln), (IIp), (Ilq), (Ilr), (Ils), (lIt), (IIv), (IIw) and (IIx):
- R a , R b and R c are each independently H or a group R’ : being at least one of R a , R b and R c a group R’; n and n’ being each independently selected from 1 to 40, preferably n and n’ are each independently is 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10; m 1 and, m2 being each independently selected from 0, 1 or 2; m 3 , m 4 , m 5 and m 6 being each independently selected from 1 to 12, preferably 1 to 6, more preferably 1 or 2;
- N* is a nitrogen atom of an amino group of an amino acid residue of the AAV vector’s capsid
- -- - -- represents the point of attachment to the capsid of the AAV vector
- Z is or comprises a linear or a cyclic peptide or a saccharide, wherein said peptide may be a peptide featuring biological activity, for example a blood brain barrier (BBB) shuttle peptide, preferably selected from the group consisting of a peptide THR or a peptide with a RGD motif, including a cyclic RGD peptide, and being the saccharide preferably selected from the group consisting of monosaccharides, oligosaccharides, polysaccharides and derivatives thereof, preferably a saccharide selected from the group consisting of mannose, galactose, N-acetylglucosamine, fucose, fructose, glucose, xylose, trehalose, desosamine, glucuronic acid, S6-galactose, S6-N-acetylgalactosamine, P6- mannose, P6-glucose, sialic acid, SI -fructose
- Ar is a 6- to 10-membered aromatic carbocyclic group or a 5- or 12-membered heterocyclic group comprising one or more heteroatoms selected from the group consisting of N, O, S and Se, preferably a phenylene or pyridylene group, optionally comprising one or more substitutions selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 acyl and C 1-6 alkoxy; and R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl, Z-(OCH 2 -CH 2 )n-, Z-C(0)NH-(CH 2 )q- (OCH 2 -CH 2 )n-, and Z-NHC(O)-(CH 2 )q-(OCH 2 -CH 2 )n-, wherein q is selected from 1 to 3, n is selected from 0 to 40, and Z is as defined and described in classes and subclasses
- alkyl refers to a monovalent or divalent, linear or branched, saturated hydrocarbon chain, comprising 1-8 carbon atoms (also named (C1-C8)alkyl), such as methyl, ethyl, propyl, isopropyl, n-butyl, iso-butyl, sec-butyl, tert-butyl, tert-butyl- methyl, n-pentyl, n hexyl, n-heptyl, or n-octyl group.
- alkylene group corresponds to the bivalent group obtained by removal of a hydrogen atom from an alkyl group, as defined above herein, resulting in a moiety with two points of attachment.
- acyl refers to a -C(O)R group, where R is an alkyl group as defined earlier or a phenyl group.
- An acyl group includes for example acetyl, ethyl carbonyl, or benzoyl group.
- alkoxy or “alkyloxy” refers to a -O-Alk group wherein Aik is an alkyl group as defined above.
- An alkoxy group includes for example methoxy, ethoxy, n- propyloxy, or tert-butyloxy group.
- aryl group it is herein referred to an aromatic monocyclic (i.e. phenyl) or bicyclic system (i.e. phenyl) comprising 4-12 carbon atoms, preferably 6 to 10, it being understood that in the case of a bicyclic system, one of the cycles is aromatic and the other cycle is aromatic or unsaturated.
- Aryl groups include for example phenyl, naphthyl, indenyl, or benzocyclobutenyl groups, optionally substituted by one or more groups optionally comprising one or more substitutions selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 acyl and C 1-6 alkoxy.
- a preferred aryl group used herein is phenyl.
- arylene group corresponds to the bivalent group obtained by removal of a hydrogen atom from an aryl group, as defined above herein, resulting in a moiety with two points of attachment.
- a preferred arylene group used herein is phenylene optionally substituted by one or more groups optionally comprising one or more substitutions selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 acyl and C 1-6 alkoxy.
- heteroaryl group it is herein referred to a 5 to 12 carbon-atom aromatic ring or ring system containing 1 to 2 rings which are fused together or linked covalently, typically containing 5 to 6 atoms on each ring; at least one of which is aromatic and in which one or more carbon atoms in one or more of these rings is replaced by oxygen, nitrogen, sulfur or selenium atoms, where the nitrogen and sulfur heteroatoms may optionally be oxidized and the nitrogen heteroatoms may optionally be quatemized.
- Such rings may be fused to an aryl ring.
- Non-limiting examples of such heteroaryl groups include: triazolyl, pyrrolyl, furanyl, thiophenyl, pyrazolyl, imidazolyl, oxazolyl, isoxazolyl, thiazolyl, isothiazolyl, oxadiazolyl, thiadiazolyl, tetrazolyl, oxatriazolyl, thiatri azolyl, pyridinyl, pyrimidyl, pyrazinyl, pyridazinyl, oxazinyl, dioxinyl, thiazinyl, triazinyl, imidazo[2,l-b][l,3]thiazolyl, thieno[3,2-b]furanyl, thieno[3,2-b]thiophenyl, thieno[2,3-d][l,3]thiazolyl, thieno[2,3-d]imidazolyl,
- heteroaryl group used herein is pyridyl.
- heteroarylene group corresponds to the bivalent group obtained by removal of a hydrogen atom from a heteroaryl group, as defined above herein, resulting in a moiety with two points of attachment.
- a preferred heteroarylene group used herein is pyridylene optionally substituted by one or more groups selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 acyl and C 1-6 alkoxy.
- heteroatom means one or more of oxygen, sulfur, nitrogen, phosphorus, selenium, or silicon (including, any oxidized form of nitrogen, sulfur, phosphorus, selenium, or silicon; the quatemized form of any basic nitrogen or; a substitutable nitrogen of a heterocyclic ring, for example N (as in 3,4-dihydro-2H- pyrrolyl), NH (as in pyrrolidinyl) or NR + (as in N-substituted pyrrolidinyl)).
- halogen means F, Cl, Br, or I.
- arylalkyl refers to a -Aik- Ar group, wherein Aik represents an alkyl group as defined earlier, and Ar represents an aryl group as defined earlier.
- heteroalkyl refers to a linear or branched saturated hydrocarbon chain, comprising 1 to 5 carbon atoms and at least 1 or 2 heteroatoms, such as sulfur, nitrogen or oxygen atoms, in particular groups alkoxy, alkylamines, dialkylamines, thioethers, among others.
- Heteroalkyl groups for example include -O(CH 2 ) n OCH 3 , - (CH 2 )nOCH 3 , -N(CH 2 )n-N(CH 2 CH 3 ) 2 , -N(CH 2 CH 3 ) 2 , or -(CH 2 )n-S-(CH 2 )n-CH 3 , where n is selected from 1 to 4, among others.
- cycloalkyl refers to a saturated monocyclic or polycyclic system, such as a fused or bridged bicyclic system, comprising 3-12 carbon atoms, such as the cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, adamantly, decalinyl, or norbomyl groups.
- haloalkyl means a linear or branched saturated hydrocarbon chain, comprising 1-6 carbon atoms and substituted with one or more, and notably 1-6 halogen atoms, such as the trifluoromethyl or 2,2,2-trifluoroethyl groups.
- O-R a refers to group in which the R group may be an alkyl, an aryl, a haloalkyl or an arylalkyl group, as defined earlier, is connected to the remainder of the molecule through an oxygen atom.
- O-cycloalkyl includes for example the O-cyclopentyl or O-cyclohexyl group.
- compounds may contain “optionally substituted” moi eties.
- substituted whether preceded by the term “optionally” or not, means that one or more hydrogens of the designated moiety of compounds are replaced with a suitable substituent. “Substituted” applies to one or more hydrogens that are either
- an “optionally substituted” group may have a suitable substituent at each substitutable position of the group, and when more than one position in any given structure may be substituted with more than one substituent selected from a specified group, the substituent may be either the same or different at every position.
- Combinations of substituents envisioned by this disclosure are preferably those that result in the formation of stable or chemically feasible compounds.
- stable refers to compounds that are not substantially altered when subjected to conditions to allow for their production, detection, and, in certain embodiments, their recovery, purification, and use for one or more of the purposes disclosed herein.
- Suitable substituents on a substitutable carbon atom of an “optionally substituted” group are independently halogen; alkyl, acyl, aryl, heteroaryl, arylalkyl, heteroalkyl, cycloalkyl, alkoxy, haloalkyl, haloalkoxy, or a group O-R a , wherein R a and each of the substituents are as defined above herein, among others.
- the terms “moi eties of formula (II)” and “compounds of formula (III)” are used, said terms also include the possible pharmaceutically acceptable salts that said moieties and compounds may form.
- pharmaceutically acceptable salt includes conventional salts formed from pharmaceutically acceptable inorganic or organic acids or bases as well as quaternary ammonium salts.
- suitable acid salts include hydrochloric, hydrobromic, sulfuric, phosphoric, nitric, perchloric, fumaric, acetic, propionic, succinic, glycolic, formic, lactic, maleic, tartaric, citric, palmoic, malonic, hydroxymaleic, phenylacetic, glutamic, benzoic, salicylic, fumaric, toluenesulfonic, methanesulfonic, naphthalene-2-sulfonic, benzenesulfonic hydroxynaphthoic, hydroiodic, malic, steroic, tannic etc.
- suitable basic salts include sodium, lithium, potassium, magnesium, aluminium, calcium, zinc, N,N'-dibenzylethylenediamine, chloroprocaine, choline, diethanolamine, ethylenediamine, N-methylglucamine and procaine salts.
- preferred salt forms include sodium salts of the compounds of formula (III) disclosed within the scope of the present description.
- compositions are well known in the art. For example, S. M. Berge et al., describe pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences, 1977, 66, 1-19, incorporated herein by reference. For the purposes of the present specification, pharmaceutically acceptable salts also include zwitterionic pharmaceutically forms.
- stereosi omers which are not mirror images of each other are designated as “diastereoisomers”, and stereoisomers which are non-superposable mirror images of each other are designated as “enantiomers” or “optical isomers”.
- “Stereoisomers” refer to racemates, enantiomers and diastereoisomers. A pair of diastereoisomers is designated as epimers.
- structures depicted herein are also meant to include all isomeric (e.g., enantiomeric, diastereomeric, and geometric (or conformational)) forms of the structure; for example, the R and S configurations for each asymmetric center, Z and E double bond isomers, and Z and E conformational isomers. Therefore, single stereochemical isomers as well as enantiomeric, diastereomeric, and geometric (or conformational) mixtures of the present compounds are within the scope of the present disclosure. Unless otherwise stated, all tautomeric forms are within the scope of the disclosure.
- the term “anomer” refers cyclic monosaccharides which are epimers and differ in the configuration of their C-l carbon atom if said monosaccharide is an aldose, and in the configuration of their C-2 carbon atom if they are ketoses, wherein said C-l or C-2 carbon atom is respectively named “anomeric carbon”.
- bioisostere when referred to a specific group or moiety, and in particular to the group amide included in the embodiments and aspects defined in the present invention, refers to other possible groups or moieties which are comparable in electronic and steric arrangement to said specific group, meaning that the bioisostere groups share some common biological properties in addition to their physicochemical analogy.
- the present disclosure also includes compounds that differ only in the presence of one or more isotopically enriched atoms.
- compounds having the present structures including the replacement of hydrogen by deuterium or tritium, or the replacement of a carbon by a 13 C- or 14 C-enriched carbon are within the scope of this disclosure.
- Such compounds are useful, for example, as analytical tools, as probes in biological assays, or as therapeutic agents in accordance with the present disclosure.
- compounds of this disclosure comprise one or more deuterium atoms.
- the functional moiety R L -NH- may be of any type and is typically selected depending on the biological effect which is sought when chemically modifying the capsid of the AAV vector.
- R L -NH- comprises a cell -type specific ligand, a labelling agent, a steric shielding agent, a drug moiety or combinations thereof.
- the functional moiety R L -NH- may also comprise a (nano)-particle, including a magnetic (nano-) particle and a quantum dot.
- R L -NH- may comprise an iron, stain, silicium, gold or carbon (nano)- particle.
- R L -NH- is a functional moiety comprising, or consisting of, a labeling agent, e.g. a fluorescent dye such as fluorescein, fluoroalanine, , rhodamine, boron-dipyrromethene (Bodipy®) dyes, and Alexa fluor®, or a radionuclide.
- a labeling agent e.g. a fluorescent dye such as fluorescein, fluoroalanine, , rhodamine, boron-dipyrromethene (Bodipy®) dyes, and Alexa fluor®, or a radionuclide.
- R L -NH- is a functional moiety comprising, or consisting of, a steric shielding agent, e.g. an agent able to mask certain epitopes of the capsid, thereby avoiding the binding of neutralizing antibodies.
- R L -NH- may comprise a polyethylene glycol (PEG), pHPMA, a peptide or a polysaccharide.
- R L -NH- comprises a polyethylene glycol (PEG), comprising from 1 to 40 ethylene glycol monomers, e.g. from 1 to 10, such as e.g. .
- R L -NH- is a functional moiety comprising, or consisting of a saccharide or a peptide, being said saccharide and peptide as defined in the claims and embodiments of the present specification.
- the functional moiety R L -NH- comprises a group Z and optionally one or more spacers L. In other embodiments, the functional moiety R L -NH- consists of a group Z-NH- and does not comprise one or more spacers L.
- Z is a functional moiety comprising, or consisting of, a cell-type specific ligand, namely a ligand enabling targeting of a specific type of cell.
- a ligand can enable modification of the tropism of the AAV vector, namely its capacity to selectively infect and/or transduce a given cell line, tissue, and/or organ.
- Z can comprise or consist of a ligand which specifically binds to a membrane biological entity (e.g. a membrane receptor) of the targeted cell.
- such a ligand can be, for instance, a saccharide, a hormone, including a steroid hormone, a peptide such as a peptide with a RGD motif, Angiopep-2 or muscle targeting peptides, a protein or a functionally active fragment thereof, a membrane receptor or a functionally active fragment thereof, CB 1 and CB2 ligands, an antibody including heavy-chain antibody, or functionally active fragments thereof such as Fab, Fab’, and VHH, a ScFv, a diabody, a aptamer including nucleic acid aptamer and peptide aptamer, a small chemical molecules known to bind to the targeted biological entity and the likes such as vitamins and drugs, and/or any suitable combination thereof.
- a hormone including a steroid hormone, a peptide such as a peptide with a RGD motif, Angiopep-2 or muscle targeting peptides, a protein or a functionally active fragment thereof, a
- cell-type specific ligand refers to a compound (chemical or biological) that mediates specific binding and transduction of the target cell types and therefore can be used to selectively deliver transgenes into specific cell types in vivo, which increases the numbers of AAV vector particles reaching the targeted cells and tissues and decreases adverse effects in non-targeted cells and tissues.
- a cell-type specific ligand is an agent that exhibits high affinity for target cells and little to no affinity for non-target cells.
- the target cell is of a particular tissue type, and the cell- type specific ligand specifically binds to a marker protein, surface antigen, receptor protein, that is expressed by cells of the target tissue.
- “functionally active fragment” it is meant a fragment of, e.g., a protein, a membrane receptor or an antibody, which retains the functional activity of its full-length counterpart.
- Z comprises, or consists of, a cell-type specific ligand derived from a saccharide. Details on saccharides are provided hereafter.
- Z comprises, or consists of, a cell-type specific ligand derived from proteins such as transferrin, Epidermal Growth Factor (EGF), and basic Fibroblast Growth Factor FGF.
- EGF Epidermal Growth Factor
- FGF basic Fibroblast Growth Factor
- Z comprises, or consists of, a cell-type specific ligand derived from vitamins such as folic acid.
- Z is or comprises a linear or a cyclic peptide, wherein said peptide may be a peptide featuring biological activity.
- the peptide may be peptide targeting transmembranal receptors, being said peptide targeting transmembranal receptors linked or not to cellular transcytose mechanisms allowing the crossing of a natural barrier, such as the blood brain barrier (BBB).
- BBB blood brain barrier
- the peptide is a blood brain barrier (BBB) shuttle peptide (or BBB-penetrating peptide) with an enhanced transduction activity across the blood brain barrier.
- the BBB shuttle peptide is selected from the group consisting of a peptide THR or a peptide with a RGD motif, including a cyclic RGD peptide.
- the peptide THR targets the transferrin receptor TfRl, and the RGD-based peptides target an integrin subclass. Expression of TfRl and integrins in different tissues is key for targeting CNS (via BBB) and muscle tissues.
- Z comprises a peptide THR (SEQ ID No.: 1). [0198]
- Z comprises, or consists of, a cell-type specific ligand derived from a muscle targeting peptide (MTP).
- MTP muscle targeting peptide
- Z is a cancer cell targeting peptide and comprises a peptide such as a peptide with RGD motif, including a cyclic RGD peptide.
- Z comprises, or consists of, a cell-type specific ligand derived from small molecules or hormones such as naproxen, ibuprofen, cholesterol, progesterone, or estradiol.
- Z comprises an antibody or antigen-binding portion thereof.
- an antibody may be or comprise, for example, a single chain antibody or variable domain, such as a camelid antibody, a heavy-chain antibody, a nanobody, a shark antibody, etc.
- an antibody or antigen binding portion thereof may be or comprise a Fab, a Fab’, a VHH, a ScFv, a diabody, etc.
- an antibody or antigen binding portion thereof may be characterized by having specific affinity for a particular cell-specific protein, membrane protein, and/or membrane protein receptor.
- Z comprises or consists of a cell-type specific ligand selected from the group consisting of saccharides, hormones, peptides, glycosylated peptides, proteins, glycoproteins, or fragments thereof, membrane receptors or fragments thereof, antibodies or fragments thereof, aptmers, nucleic acid or peptide aptamers, vitamins, and drugs.
- a cell-type specific ligand selected from the group consisting of saccharides, hormones, peptides, glycosylated peptides, proteins, glycoproteins, or fragments thereof, membrane receptors or fragments thereof, antibodies or fragments thereof, aptmers, nucleic acid or peptide aptamers, vitamins, and drugs.
- Z comprises or consists of a saccharide selected from the group consisting of monosaccharides, oligosaccharides and polysaccharides; preferably the saccharide is a monosaccharide, wherein said monosaccharide is preferably selected from the group consisting of mannose, galactose, N-acetylglucosamine, fucose, fructose, glucose, xylose, trehalose, desosamine, glucuronic acid, S6-galactose, S6-N- acetylgalactosamine, P6-mannose, P6-glucose, sialic acid, SI -fructose and Pl -fructose, more preferably selected from the group consisting of mannose, fructose, glucose, xylose, trehalose, glucuronic acid, S6-galactose, S6-N-acetylgalactosamine
- suitable examples of saccharides include, but are not limited to, monosaccharides, oligosaccharides, polysaccharides, and derivatives thereof; or a saccharide substituted by a peptide.
- the term “derivatives” when referring to monosaccharides, oligosaccharides or polysaccharides, is meant to encompass saccharides containing one or more non-hydroxyl group(s).
- non-hydroxyl groups include, but are not limited to, a hydrogen, an alkyl, an amino group (such as e.g. NH 2 , an alkyl amino, a dialkyl amino), an N-acetylamino group and/or a thiol group.
- the non-hydroxyl group is a negatively charged group such as a phosphate, a phosphonate, a sulfate, a sulfonate and a carboxyl group.
- “Monosaccharides”, also called “simple sugars”, are the simplest form of sugar and the most basic units of carbohydrates. Monosaccharides can be classified by the number of carbon atoms they contain, e.g., 3 (trioses), 4 (tetroses), 5 (pentoses), 6 (hexoses), 7 (heptoses), and so on.
- Examples of monosaccharides include, but are not limited to, glycolaldehyde, glyceraldehyde, dihydroxyacetone, erythrose, threose, erythrulose, arabinose, lyxose, ribose, xylose, ribulose, xylulose, allose, altrose, galactose, glucose, gulose, idose, mannose, talose, fructose, psicose, sorbose, tagatose, mannoheptulose, and sedoheptulose.
- Deoxymonosaccharides are common derivatives of monosaccharides encompassed in the present invention, i.e., monosaccharides that have had a hydroxyl group replaced with a hydrogen atom.
- deoxymonosaccharides include, but are not limited to, deoxyribose, fucose, fuculose, rhamnose, quinovose, pneumose.
- 2-amino-2-deoxymonosaccharides are also common derivatives of monosaccharides encompassed in the present invention, i.e., monosaccharides that have had a hydroxyl group replaced with an amino group.
- Examples of 2-amino-2-deoxymonosaccharides include, but are not limited to, glucosamine, galactosamine, and daunosamine, as well as their acetylated forms, including, but not limited to, N-acetylglucosamine, and N-acetylgalactosamine.
- the monosaccharide contains a negatively charged group such as a phosphate group, a sulfate group or a carboxyl group.
- Examples of monosaccharides containing a phosphate group include, but are not limited to, glucose-6-phosphate, mannose-6-phosphate and fructose- 1 -phosphate
- Examples of monosaccharides containing a sulfate group include, but are not limited to, galactose-6-sulfate (S6-galactose), N-acetylgalactosamine-6-sulfate (S6-N-acetylgalactosamine).
- Examples of monosaccharides containing a carboxyl group include, but are not limited to, glucuronic acid and sialic acid.
- “Oligosaccharides” are saccharide polymers comprising a small number (typically from two to ten) of monosaccharides.
- an oligosaccharide according to the present invention comprises at least two, three, four, five, six, seven, eight, nine or ten monosaccharides, e.g., selected from the monosaccharides disclosed hereinabove, including their derivatives.
- such oligosaccharide(s) can be a homooligosaccharide (i.e., composed of units of the same monosaccharide, including their derivatives) or heterooligosaccharides (i.e., composed of units of at least two different monosaccharides, including their derivatives).
- examples of oligosaccharides include, but are not limited to, disaccharides, trisaccharides, tetrasaccharides, pentasaccharides, hexasaccharides, heptasaccharides, octasaccharides, nonasaccharides, and decasaccharides.
- disaccharides include, but are not limited to, cellobiose, chitobiose, gentiobiose, gentiobiulose, isomaltose, kojibiose, lactose, lactulose, laminaribiose, maltose, maltulose, mannobiose, melibiose, melibiulose, nigerose, palatinose, rutinose, rutinulose, sophorose, sucrose, trehalose, turanose, and xylobiose.
- trisaccharides include, but are not limited to, kestose, maltotriose, maltotriulose, melezitose, nigerotriose, and raffinose.
- tetrasaccharides include, but are not limited to, lychnose, maltotetraose, nigerotetraose, nystose, sesamose, and stachyose.
- oligosaccharides include, but are not limited to, acarbose, fructooligosaccharide, galactooligosaccharide, isomaltooligosaccharide, and maltodextrin.
- oligosaccharides can be multi -antennary structures whereby some or all monosaccharides in the oligosaccharide are not linked to one another through O-glycosidic bonds but with branched linker structures.
- An example of a multi- antennary saccharide is tri-antennary N-acetylgalactosamine, which is a ligand for asialoglycoprotein receptor ASGPR (see e.g., Zhou et al., Development of Tri antennary N-Acetylgalactosamine Conjugates as Degraders for Extracellular Proteins; ACS Cent. Sci. 2021).
- Polysaccharides are saccharide polymers comprising a large number (typically more than ten) of monosaccharides. They range in structure from linear to highly branched.
- a polysaccharide comprises more than ten monosaccharides (such as, e.g., 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more), e.g., selected from monosaccharides disclosed hereinabove, including their derivatives.
- monosaccharides such as, e.g., 11, 12, 13, 14, 15, 16, 17, 18, 19, 20 or more
- polysaccharides can be homopolysaccharides or heteropolysaccharides.
- examples of polysaccharides include, but are not limited to, beta-glucans, lentinan, sizofiran, zymosan, cellulose, hemicellulose, chitin, chitosan, dextrins, dextran, fructan, inulin, galactan, glucan, glycogen, levan [32— >6, lignin, mannan, pectin, starch, amylopectin, amylose, and xanthan gum.
- a saccharide or derivative thereof according to the present invention is a monosaccharide, preferably a hexose.
- a preferential saccharide or derivative thereof according to the present invention is mannose, glucose, galactose, N-acetylglucosamine, N-acetylgalactosamine, S6-galactose, S6-N-acetylgalactosamine, glucuronic acid, P6-galactose or Pl- galactose.
- a preferential saccharide or derivative thereof according to the present invention is mannose, galactose, N-acetylglucosamine, or N-acetylgalactosamine.
- a saccharide or derivative thereof is mannose. In some embodiments, a saccharide or derivative thereof is galactose. In some embodiments, a saccharide or derivative thereof is N-acetylglucosamine. In some embodiments, a saccharide or derivative thereof is N-acetylgalactosamine.
- a saccharide or derivative thereof according to the present invention is a deoxymonosaccharide.
- a deoxymonosaccharide is preferably fucose.
- a saccharide or derivative thereof is a saccharide containing a non-hydroxyl group which is a dialkyl amino group.
- a saccharide containing a non-hydroxyl group which is a dialkyl amino group is a desosamine.
- a saccharide or derivative thereof is a saccharide containing a non-hydroxyl group which is a sulfate group.
- a saccharide containing a non-hydroxyl group which is sulfate group is S6-galactose, or S6-N-acetylgalactosamine.
- a saccharide or derivative thereof is a saccharide containing a non-hydroxyl group which is a phosphate group.
- a saccharide containing a non-hydroxyl group which is phosphate group is P6-glucose, P6- mannose, or Pl -fructose.
- a saccharide or derivative thereof is a saccharide containing a non-hydroxyl group which is a carboxyl group.
- a saccharide containing a non-hydroxyl group which is carboxyl group is glucuronic acid or sialic acid.
- the saccharide is selected from the group comprising, or consisting of mannose, galactose, N-acetylglucosamine, fucose, fructose, glucose, xylose, trehalose, desosamine, glucuronic acid, S6-galactose, S6-N-acetylgalactosamine, P6- mannose, P6-glucose, sialic acid, SI -fructose and Pl -fructose.
- the saccharide is selected from the group consisting mannose, fructose, glucose, xylose, trehalose, glucuronic acid, S6-galactose, S6-N-acetylgalactosamine, P6- mannose, P6-glucose, sialic acid and Pl -fructose, more preferably mannose.
- the functional moiety R L -NH- comprises a group Z and at least one spacer L.
- one or more spacers L are present for linking the group Z to the squaramide linker of formula (I).
- the functional moiety R L -NH- comprises one or more groups Z and one or more spacers L. In some aspects, the functional moiety R L -NH- comprises 1 to 3 groups Z, each of said groups Z linked to one or more spacers L present for linking each of the groups Z to the squaramide linker of formula (I).
- L may be any chemical chain which can comprise heteroatoms as well as cyclic moieties such as aryl and/or heteroaryl groups.
- L may comprise up to 1000 carbon atoms and even more.
- the length and the chemical nature of L may be optimized depending on the group Z which is intended to be coupled to the AAV vector and the biological effect which is sought.
- L is a chemical chain group comprising from 2 to 1000 carbon atoms, preferably from 2 to 500 carbon atoms, from 2 to 300 carbon atoms, e.g. from 2 to 100 carbon atoms, 2 to 40 carbon atoms, from 4 to 30 carbon atoms, or from 4 to 20 carbon atoms.
- L connects the group Z to the squaramide linker of formula (I), as defined in the present disclosure, and preferably comprises up to 1000 carbon atoms and is preferably in the form of a chemical chain which optionally comprises heteroatoms (e.g. O, NH, S, Se or P) and/or cyclic moieties, such as aryl and/or heteroaryl groups.
- heteroatoms e.g. O, NH, S, Se or P
- cyclic moieties such as aryl and/or heteroaryl groups.
- L may comprise one or more groups or moieties selected from alkyl (e.g., C 1-20 , C 1-12 , C 1-6 alkyl), aryl, heteroaryl, alkyl ether, polyether, polyester, acyl, alkyl amide, polyamide, a guanidine, or a combination thereof.
- alkyl e.g., C 1-20 , C 1-12 , C 1-6 alkyl
- aryl aryl
- heteroaryl alkyl ether
- polyether polyether
- polyester acyl, alkyl amide, polyamide, a guanidine, or a combination thereof.
- acyl alkyl amide
- polyamide polyamide
- a guanidine a combination thereof.
- “combination” means that L may comprise several hydrocarbon chains, oligomer chains, polymeric chains (e.g.
- heteroatoms optionally one or more heteroatoms, aryl or heteroaryl groups, linked by any appropriate group, such as -O-, -S-, -NHC(O)-, - OC(O)-, -C(O)-O-C(O)-, -NH-, -NH-CO-NH-, -O-CO-, -NH-(CS)-NH-, -NH-CS- phosphodiester or phosphorothioate groups.
- alkyls is contemplated, including, but not limited to, -(CH 2 ) n -, wherein “n” is from about 2 to about 20 or more.
- L comprises a C 2-20 straight or branched alkyl chain.
- L is or comprises a polyether (e.g., polyethylene or polypropylene glycol).
- ethers and polyethers are contemplated, including, but not limited to, -(OCH 2 CH 2 ) n -, wherein “n” is an integer from about 1 to about 40 or more.
- L is or comprises a polyethylene glycol (“PEG”) of formula -(OCH 2 CH 2 ) n -, wherein “n” is an integer from 1-10, an integer from 1-6, and integer from 3-6, and integer from 3-5, or an integer selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
- PEG polyethylene glycol
- L is or comprises a polypropylene glycol, e.g., of formula -(OCH(CH 3 )CH 2 ) n -, wherein “n” is an integer from 1-10, an integer from 1-6, and integer from 3-6, and integer from 3-5, or an integer selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
- L is or comprises an alkyl amide.
- alkyl amides include, but not limited to, -(CH 2 ) y -C(O)NH-(CH 2 ) P - and -(OCH 2 CH 2 ) y -C(O)NH-(OCH 2 CH 2 )p- wherein “y” and “p” can be the same or different and “y” and “p” are from about 1 to about 20 or more.
- L is or comprises an alkyl amide of formula -(CH 2 ) y -C(O)NH-(CH 2 ) P - or of formula - (OCH 2 CH 2 )y-C(O)NH-(OCH 2 CH 2 ) P -, wherein “y” and “p” are each independently selected from an integer from 1-10, an integer from 1-6, and integer from 3-6, and integer from 3-5, or an integer independently selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
- L comprises a polymer of ⁇ -alanine, preferably comprising 1 to 40 ⁇ -alanine monomers, more preferably Ito 10 ⁇ -alanine monomers.
- L may also comprise an alkylene diamine, e.g., -NH-(CH 2 )r-NH-, where “r” is an integer from 2 to 20, for instance from 2 to 10, or an integer selected from 2, 3, 4, or 5.
- L is a polymer of alkylene diamines (also known as polyamines), e.g., a compound of formula -NH-[(CH 2 ) r -NH]t-, where “r” is as defined above and herein, and “t” is an integer of at least 2, for example of at least 3, 4, 5, 10 or more.
- Polymers of alkyl diamines of interest are, for instance, spermidine, and spermine.
- L may also comprise polyamides obtained from vinylic monomers such as poly(N-(2-hydroxypropyl)methacrylamide) (pHPMA), (e.g., pHPMA having a molecular weight between about 200 and about 5000 g/mol).
- pHPMA poly(N-(2-hydroxypropyl)methacrylamide)
- L may also comprise polyesters such as polycaprolactone (e.g., polycaprolactone having a molecular weight between about 200 and about 5000 g/mol) or poly(D,L-lactic-co-glycolic acid) (PLGA) (e.g., PLGA having a molecular weight between about 200 and about 5000 g/mol).
- polycaprolactone e.g., polycaprolactone having a molecular weight between about 200 and about 5000 g/mol
- PLGA poly(D,L-lactic-co-glycolic acid)
- L may also comprise an acyl group, e.g., -(CH 2 )r-C(O)-, where “r” is an integer from 2 to 20, for instance from 2 to 10, or an integer selected from 2, 3, 4, or 5.
- acyl group e.g., -(CH 2 )r-C(O)-, where “r” is an integer from 2 to 20, for instance from 2 to 10, or an integer selected from 2, 3, 4, or 5.
- L may include one or more optionally substituted groups comprising, or consisting of, an arylene or a heteroarylene group, a saturated or unsaturated, linear or branched C 2 -C 40 hydrocarbon chain, an alkylene amine containing group, an acyl containing group, an amino acid moeity, a polyethylene glycol, a polypropylene glycol, a polyether of a branched polyol, a ⁇ -alanine polymer, pHPMA, PLGA, polymers of alkylene diamines, and combinations thereof.
- optionally substituted groups comprising, or consisting of, an arylene or a heteroarylene group, a saturated or unsaturated, linear or branched C 2 -C 40 hydrocarbon chain, an alkylene amine containing group, an acyl containing group, an amino acid moeity, a polyethylene glycol, a polypropylene glycol, a polyether of a branched polyol, a ⁇ -alan
- L is or comprises a polyethylene glycol (PEG), comprising from 1 to 40 ethylene glycol monomers, e.g. from 2 to 10, such as e.g. - (OCH 2 CH 2 ) 2 - (referred to herein as “PEG2”), -(OCH 2 CH 2 ) 3 - (referred to herein as “PEG3”), -(OCH 2 CH 2 ) 3 - (referred to herein as “PEG3”), -(OCH 2 CH 2 ) 4 - (referred to herein as “PEG4”), or -(OCH 2 CH 2 ) 5 - (referred to herein as “PEG5”).
- PEG polyethylene glycol
- L may comprise one or more arylene or a heteroarylene groups Ar.
- the arylene or a heteroarylene group Ar is a 6- to 10-membered aromatic carbocyclic group or a 5- or 12-membered heterocyclic group comprising one or more heteroatoms selected from the group consisting of N, O, S and Se.
- the group Ar is substituted by an acyl or an amide moiety, or a bioisostere thereof.
- the arylene or a heteroarylene group Ar is selected from the group consisting of phenylene and pyridylene.
- L comprises an optionally substituted phenylene moiety.
- L comprises an optionally substituted pyridylene moiety.
- said phenylene or pyridylene groups are substituted by one or more moieties selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 acyl and C 1-6 alkoxy.
- L may comprise an alkylene, ether, polyether, alkylene amide, arylene group, heteroarylene group, an acyl group or a combination thereof.
- L comprises a polyether, arylene group, heteroarylene group, acyl group or a combination thereof.
- L comprises an arylene or a heteroarylene group Ar.
- said arylene or a heteroarylene group Ar is a 6- to 10- membered aromatic carbocyclic group or a 5- or 12-membered heterocyclic group comprising one or more heteroatoms selected from the group consisting of N, O, S and Se.
- arylene or a heteroarylene group Ar is selected from the group consisting of phenylene and pyridylene optionally substituted by one or more moieties selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 acyl and C 1-6 alkoxy.
- L comprises a PEG.
- L comprises a PEG and one or more aromatic groups, such as an arylene group and/or heteroarylene group Ar.
- L comprises a PEG, one or more groups C 1-6 alkyl and one or more aromatic groups, such as an arylene group and/or heteroarylene group Ar.
- L comprises a PEG and an aryl or a heteroaryl group Ar selected from the group consisting of phenylene and pyridylene optionally substituted by one or more moieties selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 acyl and C 1-6 alkoxy.
- L comprises a PEG and an amino acid, preferably an arginine moiety.
- L comprises a PEG, a ⁇ -alanine polymer, and one or more aromatic groups, such as an arylene group and/or heteroarylene group Ar.
- L comprises a PEG, a ⁇ -alanine polymer, one or more groups C 1-6 alkyl, C 1-6 alkylamine or C 1-6 acyl; and an amino acid, preferably an arginine moi.
- L comprises one or more polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers, one or more C 1-6 alkylene groups, a polyether of a branched C 3-12 polyol, and one or more aromatic groups, such as an arylene group and/or heteroarylene group Ar.
- PEG polyethylene glycol
- L consists of one or more groups selected from the group consisting of an arylene or a heteroarylene group, an optionally substituted group comprising saturated or unsaturated, linear or branched C 2 -C 40 hydrocarbon chains, preferably one or more groups C 1-6 alkyl, C 1-6 alkylamine or C 1-6 acyl; a polyethylene glycol (PEG) comprising 1 to 40 ethylene glycol monomers, a polypropylene glycol (PPG) comprising 1 to 40 propylene glycol monomers, a polyether of a branched C 3-12 polyol, an arginine derivative, a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers, pHPMA, PLGA, polymers of alkylene diamines, and combinations thereof; and wherein L comprises at least one or more groups selected from the group consisting of an arylene or a heteroarylene group, a polyethylene glycol (PEG) comprising 1 to 40
- R 1 is selected from the group consisting of H, C 1- 6 alkyl, C 1-6 haloalkyl, Z-(OCH 2 -CH 2 )n- Z-C(O)NH-(CH 2 )q-(OCH 2 -CH 2 )n-, and Z- NHC(O)-(CH 2 )q-(OCH 2 -CH 2 )n-, wherein q is selected from 1 to 3, n is selected from 0 to 40, and Z is as defined and described in classes and subclasses disclosed in the present invention.
- R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl and Z-(OCH 2 -CH 2 )n-, wherein n is selected from 1 to 40.
- R 1 is selected from the group consisting of H, C 1-6 alkyl and C 1-6 haloalkyl. Even more preferably R 1 is H.
- R 2 is selected from the group consisting of linear C 1-12 alkyl, branched C 3-12 alkyl, linear C 1-12 haloalkyl, branched C 3-12 haloalkyl, aryl, heteroaryl and benzyl.
- R 2 is methyl, ethyl, trifluoromethyl, trifluoroethyl, phenyl, pyridyl or benzyl, more preferably ethyl.
- the group Ar is an arylene group, wherein said arylene group is as defined and described in classes and subclasses disclosed in the present invention.
- the group Ar is an heteroarylene group, wherein said heteroaryl group is as defined and described in classes and subclasses disclosed in the present invention.
- said arylene or a heteroarylene group Ar is a 6- to 10- membered arylene group or a 5- or 12-membered heteroarylene group comprising one or more heteroatoms selected from the group consisting of N, O, S and Se.
- the arylene or a heteroarylene group Ar is selected from the group consisting of phenylene and pyridylene optionally substituted by one or more moieties selected from the group consisting of halogen, C 1-6 alkyl, C 1-6 haloalkyl, C 1-6 acyl and C 1- 6 alkoxy.
- the present invention relates to an AAV vector particle comprising a moiety of formula (II): wherein said AAV vector particle comprises a squaramide linker of formula (I): the group R L and an amino acid residue of a capsid from the AAV vector are covalently linked to the squaramide linker of formula (I); N is a nitrogen atom from the amino moiety of a functional moiety R L -NH- as defined in the present invention, and N* is a nitrogen atom of a primary amino group from a surface-exposed amino acid residue of a capsid polypeptide from the AAV vector.
- the present invention relates to an AAV vector particle comprising a moiety of formula (II), as defined in the present disclosure, in which the functional moiety R L -NH- comprises a group Z, one or more spacers L, and the adeno- associated virus (AAV) vector particle is represented by formula (Ila): wherein N*, Z and L, are as defined and described in classes and subclasses in the present invention.
- L comprises one or more optionally substituted groups selected from the group consisting of an arylene or an heteroarylene group Ar, a saturated or unsaturated, linear or branched C 2 -C 40 hydrocarbon chain, preferably one or more groups C 1-6 alkylene, C 1-6 alkylamine or C 1-6 acyl, a polyethylene glycol, a polypropylene glycol, an amino acid moiety, a ⁇ -alanine polymer, a polyether of a branched C 3-12 polyol, pHPMA, PLGA, polymers of alkyl diamines and combinations thereof; preferably L is or comprises one or more groups selected from the group consisting of a polyethylene glycol, an aryl or an heteroaryl group Ar, a C 1-6 alkylene group, a C 1-6 alkylamine, a C 1-6 acyl group, an amino acid moiety, preferably an arginine moiety, a polyether of a branched C 3-12
- the present invention relates to an AAV vector particle comprising a moiety of formula (II), as defined in the present disclosure, comprises more than one spacer L selected from the group consisting of L 1 , L 2 and L 3 , and said moiety of formula (II) is selected from the group consisting of formula (Ilai), (IIa2), (IIa3), (IIa4), (IIa5), (IIa6), (IIa7), (IIa8), (IIa9), (IIa10), (IIa11), (IIa12), (IIa13), (IIa14), (IIa 15 ), (IIa 16 ), (IIa 17 ), (IIa 18 ), (IIa 19 ) and (IIa 20 ):
- N*, Z, L 1 , L 2 and L 3 are as defined and described in classes and subclasses disclosed in the present invention.
- L 1 is an optionally substituted group selected from the group consisting of polyethylene glycol, polypropylene glycol, pHPMA, PLGA, a ⁇ - alanine polymer, a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol, polymers of alkyl diamines and combinations thereof; preferably L 1 is selected from the group consisting of a polyethylene glycol, a ⁇ -alanine polymer and a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol.
- the polyethylene glycol (PEG) comprises 1 to 40 ethylene glycol monomers.
- the polyethylene glycol (PEG) is PEG3, PEG4, or PEG5.
- the ⁇ -alanine polymer comprises 1 to 40 ⁇ -alanine monomers, preferably 1 to 10 ⁇ -alanine monomers.
- L 2 comprises one or more arylene or a heteroarylene groups Ar, as defined herein. In some preferred embodiments embodiments, L 2 comprises a phenylene group or a pyridylene group.
- L 1 comprises one or more of a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, a ⁇ -alanine polymer comprising 1 to 40 ⁇ - alanine monomers, and a polyether of a branched C 3-12 polyol, preferably a branched C 3- 6 polyol;
- L 2 comprises one or more arylene or a heteroarylene groups;
- L 3 comprises a C 1-6 alkylene group, a C 1-6 alkylamine, a C 1-6 acyl group, or an amino acid moiety, preferably an arginine moiety.
- L 3 is covalently linked to L 2 by one carbon atom of the arylene group or by one carbon atom or one heteroatom of the heteroarylene group; and L 1 and L 2 or L 1 and L 3 are covalently linked by an amide moiety, or a bioisostere moiety thereof, preferably an amide moiety -N(R 1 )C(O)-, or a bioisostere moiety thereof, wherein R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl, Z- (OCH 2 -CH 2 )n- Z-C(O)NH-(CH 2 )q-(OCH 2 -CH 2 )n-, and Z-NHC(O)-(CH 2 )q-(OCH 2 - CH 2 )n- wherein q is selected from 1 to 3, n is selected from 0 to 40, and Z is as defined and described in classes and subclasses disclosed in the present invention
- L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers;
- L 2 comprises one or more arylene or a heteroarylene groups;
- L 3 is a C 1-6 alkylene group;
- L 3 is covalently linked to L 2 by one carbon atom of the arylene group or by one carbon atom or one heteroatom of the heteroarylene group;
- L 1 and L 3 are covalently linked by an amide moiety -N(R 1 )C(O)-, or a bioisostere moiety thereof, wherein R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl, Z- (OCH 2 -CH 2 )n-, Z-C(O)NH-(CH 2 )q-(OCH 2 -CH 2 )n-, and Z-NHC(O)-(CH 2 )q-(OCH 2 - CH 2 )n- wherein q is selected from 1 to
- L 1 and L 2 are covalently linked by an amide moiety -N(R 1 )C(O)-, or a bioisostere moiety thereof, wherein R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl, Z-(OCH 2 -CH 2 )n- Z-C(O)NH-(CH 2 )q- (OCH 2 -CH 2 )n-, and Z-NHC(O)-(CH 2 )q-(OCH 2 -CH 2 )n-, wherein q is selected from 1 to 3, n is selected from 0 to 40, and Z is as defined and described in classes and subclasses disclosed in the present invention; preferably R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl and Z-(OCH 2 -CH 2 )n- wherein n is selected from 1 to 40 and more preferably R 1 is H
- L 1 and L 3 are covalently linked by an amide moiety -N(R 1 )C(O)-, or a bioisostere moiety thereof, wherein R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl, Z-(OCH 2 -CH 2 )n- Z-C(O)NH-(CH 2 )q- (OCH 2 -CH 2 )n- and Z-NHC(O)-(CH 2 )q-(OCH 2 -CH 2 )n- wherein q is selected from 1 to 3, n is selected from 0 to 40, and Z is as defined and described in classes and subclasses disclosed in the present invention; preferably R 1 is selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl and Z-(OCH 2 -CH 2 )n-, wherein n is selected from 1 to 40. More preferably R 1 is H or
- L 1 comprises one or more polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers and a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol;
- L 2 comprises one or more arylene or a heteroarylene groups Ar; and
- L 3 comprises one or more C 1-6 alkylene groups; the PEG and one C 1-6 alkylene group are covalently linked by an amide moiety or a bioisostere thereof, the polyether of a branched C 3-12 polyol and the and the C 1-6 alkylene group are covalently linked by an ether bond, the polyether of a branched C 3-12 polyol and an arylene or a heteroarylene group Ar are covalently linked by an amide moiety or a bioisostere thereof, preferably an amide moiety -N(R 1 )C(O)-, or a bioisostere moiety thereof.
- PEG polyethylene glycol
- L 1 comprises one or more of a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers and a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers
- L 2 comprises one or more arylene or a heteroarylene groups Ar
- L 3 comprises one or more C 1-6 alkylene, C 1-6 alkylamine and C 1-6 acyl groups
- L 1 and L 2 or L 1 and L 3 are covalently linked by an amide moiety -N(R 1 )C(O)-, or a bioisostere moiety thereof.
- L 1 comprises one or more of a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomer and a ⁇ -alanine polymer comprising 1 to 40 ⁇ -alanine monomers
- L 3 comprises one or more C 1-6 alkylene groups, C 1-6 alkylamine groups, C 1-6 acyl groups and an amino acid moiety, preferably an arginine moiety.
- n is 1, 2, 3, 4 or 5; n’ is selected from 2 to 8; mi and m2 are each independently 0, 1, or 2; m 3 ,m4, ms and me are each independently 1 to 3, preferably 2; Ar is a phenylene or a pyridylene group; and R 1 is H.
- bioisostere moieties of the amide moiety includes N-substituted and non- substituted moieties, for examples an amide -N(R 1 )C(O)- and bioisoteres thereof that may be selected from -C(O)N(R 1 )-, -N(R 3 )C(O)N(R 1 )-,
- R 3 and R 1 are each independently selected from the group consisting of H, C 1-6 alkyl, C 1-6 haloalkyl, aryl, alkylaryl, Z-(OCH 2 -CH 2 )n- Z-C(O)NH-(CH 2 )q-(OCH 2 -CH 2 )n-, and Z-NHC(O)- (CH 2 )q-(OCH 2 -CH 2 )n-, wherein q is selected from 1 to 3,
- L 2 comprises an arylene or a heteroarylene group Ar
- L 1 and the squaramide linker of formula (I), or L 1 and L 3 when present, are covalently bonded to said arylene or a heteroarylene group Ar in positions orto, meta or para.
- L 2 comprises an arylene or a heteroarylene group Ar and L 3 is a group C 1-6 alkylene
- L 3 and the squaramide linker of formula (I) are covalently bonded to said arylene or a heteroarylene group Ar in positions orto, meta or para.
- L 2 comprises an arylene or a heteroarylene group Ar and L 3 is a group C 1-6 alkylene
- one or more groups L 3 are covalently bonded to said arylene or a heteroarylene group Ar in positions orto, meta or para.
- L 1 or L 3 may be selected from alkyl (e.g., C 1-20 , C 1-12 , C 1- 6 alkyl), ether, polyether, polyester, polyamide, alkyl amide, or a combination thereof.
- “combination” means that L 1 or L 3 may comprise several hydrocarbon chains, oligomer chains or polymeric chains (e.g. 2, 3, 4, 5 or 6) linked by any appropriate group, such as -O-, -S-, -NHC(O)-, -OC(O)-, -C(O)-O-C(O)-, -NH-,
- L 3 comprises a C 2-20 straight or branched alkyl chain.
- L 1 or L 3 may also comprise polyesters such as poly caprolactone (e.g., poly caprolactone having a molecular weight between about 200 and about 5000 g/mol) or poly(D,L-lactic-co-glycolic acid) (PLGA) (e.g., PLGA having a molecular weight between about 200 and about 5000 g/mol).
- poly caprolactone e.g., poly caprolactone having a molecular weight between about 200 and about 5000 g/mol
- PLGA poly(D,L-lactic-co-glycolic acid)
- L 1 or L 3 may be selected from an optionally substituted group comprising, or consisting of, saturated or unsaturated, linear or branched C 2 -C 40 hydrocarbon chains, polyethylene glycol, polypropylene glycol, a poly ether of a branched C 3-12 polyol, a ⁇ -alanine polymer, pHPMA, PLGA, polymers of alkylene diamines, amino acid moieties, such as an arginine or a ⁇ -alanine moiety, and combinations thereof.
- an optionally substituted group comprising, or consisting of, saturated or unsaturated, linear or branched C 2 -C 40 hydrocarbon chains, polyethylene glycol, polypropylene glycol, a poly ether of a branched C 3-12 polyol, a ⁇ -alanine polymer, pHPMA, PLGA, polymers of alkylene diamines, amino acid moieties, such as an arginine or a ⁇ -alanine moiety, and
- alkyl amides include, but not limited to, -(CH 2 ) m 3 - C(O)NH-(CH 2 )m 4 - and -(OCH 2 CH 2 )m 3 -C(O)NH-(OCH 2 CH 2 )m 4 -, wherein “m 3 ” and “m 4 " can be the same or different and “m 3 ” and “ m 4 ” are from about 1 to about 20 or more.
- L 1 or L 3 is an alkyl amide of formula -(CH 2 )m 3 -C(O)NH- (CH 2 ) m 4 - or -(OCH 2 CH 2 )m 3 -C(O)NH-(OCH 2 CH 2 )m 4 -, wherein “m 3 ” and “ m 4 ” are each independently selected from an integer from 1-10, an integer from 1-6, and integer from 3-6, and integer from 3-5, or an integer independently selected from 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10.
- amides having the linking units of alkyl or ether bonds including, but not limited to, -R 5 -C(O)NH-R 6 -, wherein “R 5 ” and “R 6 ” are each independently selected from alkyls (e.g., C 1-20 , C 1-12 , C 1-6 alkyl), ethers, or polyethers.
- L 1 may also comprise a polyether of a branched C 3-12 polyol, preferably a branched C 3-6 polyol, an acyl group -C(O)-(CH 2 )r, or an alkylene amine, e.g.,-NH-(CH 2 ) r -, or an alkylene diamine, e.g., -NH-(CH 2 ) r -NH- where “r” is an integer from 2 to 20, for instance from 2 to 10, or an integer selected from 2, 3, 4, or 5.
- L 1 is a polymer of alkylene diamines (also known as polyamines), e.g., a compound of formula -NH-[(CH 2 ) r -NH] t -, where “r” is as defined above and herein, and “t” is an integer of at least 2, for example of at least 3, 4, 5, 10 or more.
- Polymers of alkyl diamines of interest are, for instance, spermidine, and spermine.
- L 1 may also comprise polyamides such as ⁇ -alanine polymers with 1 to 40 ⁇ -alanine monomers, or polyamides obtained from amide vinylic monomers, such as poly(N-(2-hydroxypropyl)methacrylamide) (pHPMA), (e.g., pHPMA having a molecular weight between about 200 and about 5000 g/mol).
- polyamides such as ⁇ -alanine polymers with 1 to 40 ⁇ -alanine monomers, or polyamides obtained from amide vinylic monomers, such as poly(N-(2-hydroxypropyl)methacrylamide) (pHPMA), (e.g., pHPMA having a molecular weight between about 200 and about 5000 g/mol).
- pHPMA poly(N-(2-hydroxypropyl)methacrylamide)
- L 3 is a group C 1-6 alkylene, preferably a -CH 2 - or a -CH 2 -CH 2 - group; or a group C 1-6 alkylamine, preferably a -CH 2 -CH 2 -NH-; a group C 1-6 acyl, preferably a -CH 2 -CH 2 -C(O)- group; or an amino acid moiety, preferably an arginine or a ⁇ -alanine moiety.
- the AAV vector particle comprises a moiety of formula (II) selected from the group consisting of formula (lIb), (lIe), (lId), (lIe), (Ilf),
- R a , R b and R c are each independently H or a group R’ : and wherein n, n’, m 1 , m 2 , m 3 , m 4 , m 5 , m 6 , N*, Z, Ar and R 1 are as defined and described in classes and subclasses disclosed in the present invention.
- R L comprises a group Z and one spacer L, wherein Z is a saccharide, L is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers and the moiety of formula (II) is represented by formula (lib), as defined herein.
- PEG polyethylene glycol
- AAV vector particle has a moiety of formula (Ilal) comprising a group Z and one spacer L 1 , wherein Z is a saccharide, L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers and the moiety of formula (II) is represented by formula (lib), as defined herein.
- Z is a saccharide
- L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers
- formula (lib) as defined herein.
- AAV vector particle has a moiety of formula (IIa2) or (IIa3) comprising a group Z and spacers L 1 , L 2 and L 3 , as defined herein, Z is a saccharide, L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, L 2 is an arylene or a heteroarylene group Ar, L 3 is a group C 1-6 alkylene, L 1 and L 2 are covalently linked by an amide moiety -N(R 1 )C(O)-, wherein R 1 is as defined herein and the moiety of formula (II) is represented by formula (lie).
- PEG polyethylene glycol
- Ar arylene or a heteroarylene group Ar
- L 3 is a group C 1-6 alkylene
- L 1 and L 2 are covalently linked by an amide moiety -N(R 1 )C(O)-, wherein R 1 is as defined herein and the moiety of formula (II) is
- AAV vector particle has a moiety of formula (IIa4) or (IIa5) comprising a group Z and spacers L 1 , L 2 and L 3 , as defined herein, Z is a saccharide, L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, L 2 is an arylene or a heteroarylene group Ar, L 3 is a group C 1-6 alkylene, L 1 and L 3 are covalently linked by an amide moiety -N(R 1 )C(O)-, wherein R 1 is as defined herein and the moiety of formula (II) is represented by formula (IId).
- PEG polyethylene glycol
- Ar arylene or a heteroarylene group Ar
- L 3 is a group C 1-6 alkylene
- L 1 and L 3 are covalently linked by an amide moiety -N(R 1 )C(O)-, wherein R 1 is as defined herein and the moiety of formula (II
- AAV vector particle has a moiety of formula (IIa6) comprising a group Z and spacers L 1 and L 3 , as defined herein, Z is a peptide, L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, L 3 is a group C 1-6 alkylene, L 1 and L 3 are covalently linked by an ether bond, and the moiety of formula (II) is represented by formula (lie) when the N-terminal end of the peptide Z and L 3 are covalently linked by an amide or a bioisostere moiety thereof, being the nitrogen atom of the amide the N-terminal end of the peptide Z; and the moiety of formula (II) is represented by formula (Ilf) when the C-terminal end of the peptide Z and L 3 are covalently linked by an amide or a bioisostere moiety thereof, being the carbonyl group of the amide the C-
- AAV vector particle has a moiety of formula (IIa7) or (IIa8) or (IIa9) or (Ila10) comprising a group Z and spacers L 1 , L 2 and one to three spacers L 3 , as defined herein; wherein Z is a peptide, L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, L 2 is an arylene or a heteroarylene group Ar, and L 3 is a group C 1-6 alkylene; wherein L 1 and a first spacer L 3 are covalently linked by an ether bond; L 1 and L 2 or L 1 and a second spacer L 3 are covalently linked by an amide moiety -N(R 1 )C(O)-; and the moiety of formula (II) is represented by formula (Ilh) when the N-terminal end of the peptide Z and L 3 are covalently linked by an amide or a bioisoster
- R L -NH consists of a group Z-NH-, wherein Z is a peptide, and the nitrogen atom of the group Z-NH corresponds to the N-terminal group of the peptide, and the moiety of formula (II) is represented by formula (lib), as defined herein.
- the AAV vector particle comprises a group Z and spacers L 1 , L 2 and one to three spacers L 3 , as defined herein; wherein Z is a peptide, L 1 is a ⁇ -alanine polymer, comprising 1 to 40 ⁇ -alanine monomers, L 2 is an arylene or a heteroarylene group Ar, and the L 3 spacers are a group C 1-6 alkyleneamine or a group C 1- 6 acyl or a group C 1-6 alkylene; wherein L 1 and L 2 or L 1 and one spacer L 3 are covalently linked by an amide moiety -N(R 1 )C(O)-; and the moiety of formula (II) is represented by formula (Ilj) when the N-terminal end of the peptide Z and L 1 are covalently linked by an amide or a bioisostere moiety thereof, being the nitrogen atom of the amide the N- terminal end of the peptide Z
- AAV vector particle comprises a group Z and spacers L 1 and L 3 , as defined herein, Z is a peptide, L 1 is a ⁇ -alanine polymer, comprising 1 to 40 ⁇ -alanine monomers, L 3 is a group C 1-6 alkyleneamine or a group C 1- 6 alkylene, L 1 and L 3 are covalently linked by an amide moiety, and the moiety of formula (II) is represented by formula (Ilm) when the C-terminal end of the peptide Z and L 1 are covalently linked by an amide moiety or a bioisostere moiety thereof, being the nitrogen atom of the amide the N-terminal end of the peptide Z; and the moiety of formula (II) is represented by formula (Iln) when the N-terminal end of the peptide Z and L 1 are covalently linked by an amide or a bioisostere moiety thereof; and wherein said amide may
- AAV vector particle comprises a group Z, a spacer L 1 and spacers L 3 , as defined herein, Z is a peptide, L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, a first group L 3 is a group C 1-6 alkyleneamine or a group C 1-6 acyl, and a second spacer L 3 is an arginine moiety; wherein the group C 1-6 alkyleneamine or the group C 1-6 acyl and the spacer L 1 are covalently linked by an ether bond, L 1 and the squaramide linker are both covalently linked to the arginine moiety, and the moiety of formula (II) is represented by formula (IIp) when the N- terminal end of the peptide Z and a group C 1-6 acyl are covalently linked by an amide moiety or a bioisostere moiety thereof, being the nitrogen atom of the amide the N
- the AAV vector particle comprises a group Z, two spacers L 1 and two spacers L 3 , as defined herein, Z is a peptide, a first L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, a second L 1 is a ⁇ -alanine polymer, comprising 1 to 40 ⁇ -alanine monomers; one spacer L 3 is a group C 1-6 alkyleneamine or a group C 1-6 acyl, and a second spacer L 3 is an arginine moiety; wherein the group C 1-6 alkyleneamine or the group C 1-6 acyl and the spacer L 1 are covalently linked by an ether bond, the PEG and the squaramide linker are both covalently linked to the arginine moiety, the ⁇ -alanine polymer is linked to the group C 1-6 alkyleneamine or the group C 1-6 acyl forming an amide moiety, and the
- the AAV vector particle comprises a group Z, two spacers L 1 , one L 2 and one to three spacers L 3 , as defined herein; wherein Z is a peptide, a first spacer L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers, a second spacer L 1 is a ⁇ -alanine polymer, comprising 1 to 40 ⁇ -alanine monomers; L 2 is an arylene or a heteroarylene group Ar; and each L 3 is a group C 1-6 alkylene or a group C 1-6 alkyleneamine or a group C 1-6 acyl; wherein the two spacers L 1 are both linked to a first spacer L 3 being a group C 1-6 alkyleneamine or a group C 1-6 acyl; the PEG and L 2 or the PEG and a second spacer L 3 being a group C 1-6 alkylene are covalently linked by an amide moiety -
- AAV vector particle comprises a group Z, one spacer L 2 and 0, 1 or 2 spacers L 3 , as defined herein; wherein Z is a peptide, L 2 is an arylene or a heteroarylene group; L 3 is a group C 1-6 alkylene or a group C 1-6 alkyleneamine or a group C 1-6 acyl; and the moiety of formula (II) is represented by formula (IIw) when the N-terminal end of the peptide Z and L 2 or Z and L 3 are covalently linked by an amide moiety or a bioisostere moiety, being the nitrogen atom of the amide the N-terminal end of the peptide Z; and wherein said amide may be N-substituted or non- substituted, for example an amide -N(R 1 )C(O)-, being R 1 is as defined herein.
- the AAV vector particle has a moiety of formula (IIal2) or (IIal3) or (IIal4) or (IIal5) comprising three groups Z, being Z a saccharide or a peptide, and four spacers L 1 , one spacer L 2 and three to five spacers L 3 ; wherein three spacers L 1 are polyethylene glycol (PEG) groups, comprising each independently 1 to 40 ethylene glycol monomers; one spacer L 1 is a polyether of a branched C 3-12 polyol; L 2 is an arylene or a heteroarylene group Ar; and each L 3 is a group C 1-6 alkylene; wherein the moiety of formula (II) is represented by formula (IIx), as defined herein.
- PEG polyethylene glycol
- L comprises a PEG group directly linked to a saccharide Z
- the terminal oxygen atom of the PEG group when present on the side of Z, can be part of Z.
- Z is a saccharide wherein the anomeric carbon bears the PEG linker.
- Z is a peptide
- the nitrogen atom of the amide Z-NR 3 C(O)- belongs to the N- terminal end of the peptide
- the carbonyl group of the amide Z-C(O)NR 3 - belongs to the C-terminal end of the peptide.
- the AAV vector particle of the invention is selected from:
- the AAV vector of the invention comprises a moiety of formula (II) selected from:
- the AAV vector particle of the invention is selected from the group consisting of (l)-AAV, (2)-AAV and (3)-AAV.
- the same nomenclature is used for the other AAV serotypes and modifying groups.
- the AAV vector of the invention is (3)-AAV2 comprising at least one transgene comprising the cDNA from a GBA gene, preferably a human GBA gene, optionally the transgene is under control of a at least one regulatory element, preferably of a promoter as defined above, more preferably of a CAG promoter.
- the invention further relates to a compound of formula (III), comprising a squarate ester, used to obtain the AAV vectors of the invention.
- the present invention provides a compound of formula (III): or a pharmaceutically acceptable salt thereof, wherein R 2 and R L -NH- are defined and described in classes and subclasses in the present invention.
- the functional moiety R L -NH- comprises a group Z, one or more spacers L, and the compound of formula (III) is represented by formula (Illa): wherein R 2 , Z and L are as defined and described in classes and subclasses in the present invention.
- the functional moiety R L -NH- comprises a group Z, and one or more than one spacer L selected from the group consisting of L 1 , L 2 and L 3 and, the compound of formula (Illa) is selected from the group consisting of formula (Illa 1 ), (IIIa 2 ), (IIIa 3 ), (IIIa 4 ), (Illa 5 ), (IIIa 6 ), (IIIa 7 ), (IIIa 8 ), (IIIa 9 ), (Illa 10 ), (IlIa 11 ), (IlIa 12 ), (Illa 13 ), (IIIa 14 ), (IlIa15), (IIIa 16 ), (IIIa 17 ), (IlIa 18 ), (IlIa 19 ) and (IIIa 20 ): wherein R 2 , Z, L 1 , L 2 and L 3 are as defined and described in classes and subclasses in the present invention.
- L 1 is a polyethylene glycol (PEG), comprising 1 to 40 ethylene glycol monomers
- L 2 comprises one or more arylene or a heteroarylene groups
- L 3 is a C 1-6 alkylene group, L 3 is covalently linked to L 2 by one carbon atom of the arylene group or by one carbon atom or one heteroatom of the heteroarylene group
- L 1 and L 2 or L 1 and L 3 are covalently linked by an amide moiety or a bioisostere moiety thereof.
- the compound of formula (III), as disclosed herein is selected from the group consisting of formula (Illb), (IIIc), (IIId), (Ille), (II If), (Illg), (Illh), (Illj), (IIIk), (Illm), (IlIn), (IIIp), (Illq), (Illr), (Ills), (lIlt), (IIIv), (IIIw) and
- n, n’, m 1 , m 2 , m 3 , m 4 , Z, Ar, R a , R b , R c , R 1 and R 2 are as defined and described in classes and subclasses disclosed in the present invention.
- the compound of formula (III) comprises a labelling agent (fluoresceine), or a saccharide (mannose, glucose, mannose phosphate) or a peptide (THR, SEQ ID No.: 1) and is selected from a compound of Table 2, or a salt thereof.
- a labelling agent fluoresceine
- a saccharide mannose, glucose, mannose phosphate
- a peptide THR, SEQ ID No.: 1
- this invention further relates to methods of manufacturing of an AAV vector according to the invention.
- a method of the present invention comprises incubating the AAV vector with a compound of formula (III), as defined and described in classes and subclasses of the present description, in conditions suitable for reacting a squarate moiety of the compound of formula (III) as defined and described in classes and subclasses disclosed in the present invention, with at least one amino group of an amino acid residue of the capsid of the AAV vector so as to form a squaramide linker of formula (I), as defined in the present invention.
- suitable conditions to obtain at least one moiety of formula (II) include suitable conditions to promote the formation of a covalent bond between an amino group of an amino acid residue of the capsid of the AAV vector and said squarate moiety without impairing the structural integrity of said AAV.
- an AAV vector is incubated with a compound of formula (III), and formulae (Illa 1 ), (IIIa 2 ), (IIIa 3 ), (IIIa 4 ), (Illa 5 ), (IIIa 6 ), (IIIa 7 ), (IIIa 8 ), (IIIa 9 ), (Illa 10 ), (IIla 11 ), (IlIa 12 ), (IIIa 13 ), (IIIa 14 ), (IIIa 15 ), (IIIa 16 ), (IIIa 17 ), (IlIa 18 ), (IIIa 19 ), (IIIa 20 ), (Illb), (IIIc), (IIId), (Ille), (IIIf), (Illg), (Illh), (Illj), (IIIk), (Illm), (IIIn), (IIIp), (Illq), (Illr), (Ills), (lIlt), (IIIv), (IIIw) or (IIIx) as described herein and in the section Examples.
- an incubation can be performed in an aqueous buffer having a pH ranging from 5.5 to 10, preferably from 7 to 10, e.g. from 9 to 10, such as 9.3. In some preferred embodiments, the pH is 9.3.
- an incubation buffer can be selected from TRIS buffer, borate buffer, Hepes buffer, acetate buffer, phosphate buffer e.g. PBS, or Dulbecco's phosphate-buffered saline (dPBS).
- the buffer is TRIS buffer.
- an incubation can last from several minutes to several hours, for instance from 5 min to 6 hours, e.g. from 3 to 5 hours. In some preferential embodiments, the incubation is about 4 hours. In some embodiments, an incubation can last from several hours to several days, for instance from 6 to 72 hours, e.g. from 12 to 48 hours or from 16 to 24 hours. In some embodiments, the incubation is ended when a sufficient yield of coupling is achieved.
- the temperature of incubation is typically from 4 °C to 50 °C. In some preferential embodiments, the incubation is performed at room temperature, i.e. at a temperature from 18 °C to 30 °C, e.g. at around 20°C. In some embodiments, the incubating solution can be stirred.
- the molar ratio of the compound of formula (III) to the AAV vector may be from 1.10 5 to 1.10 7 , e.g. 1.10 6 to 5.10 6 . In some preferential embodiments, there is a 3.10 6 equivalents molar excess of the compound of formula (III).
- a method of the invention may comprise one or several additional steps prior to, or after the step of incubation as described above.
- a method of the invention may comprise a preliminary step of providing or producing an AAV vector to be modified.
- a method of the invention may also comprise one or several additional steps following the step of incubation, such as: a step of removing the unreacted compound comprising a squarate group (e.g., a compound of formula (III)) at the end of the incubation step, e.g. by dialysis or tangential flow filtration, and/or a step of collecting the chemically modified AAV particles, and/or a step of purifying the AAV vector, and/or a step of recovering the AAV vector, and/or a step of formulating and/or packaging the AAV vector.
- a squarate group e.g., a compound of formula (III)
- a method of the invention may also comprise a preliminary step of providing or preparing the compound of formula (III) prior to the step of incubating the AAV vector with a compound of formula (III), as defined and described in classes and subclasses of the present description, in conditions suitable for reacting a squarate moiety of the compound of formula (III) with at least one amino group of an amino acid residue of the capsid of the AAV vector so as to form a squaramide linker of formula (I).
- the compounds of formula (III), including all compounds of formula (III) disclosed in the present invention selected from (Illa), (Illa 1 ), ( I IIa 2 ), (Illa 3 ), (IIIa4), (Illa 5 ), (IIIa 6 ), (IIIa 7 ), (IIIa 8 ), (IIIa 9 ), (Illa 10 ), (Illa 11 ), (Illa 12 ), (IIIa 13 ), (IIIa 14 ), (Illa 15 ), (Illa 16 ), (Illa 17 ), (IIIa 18 ), (IIIa 19 ), (IIIa 20 ), (IIIb), (IIIc), (Illd), (Ille), (Illf), (Illg), (Illh), (Illj), (Illk), (Illm), (IIIn), (IIIp), (Illq), (Illr), (Ills), (lIlt), (IIIv), (Illw)and (IIIx),
- the synthesis of a compound of formula (III) comprises reacting a functional moiety comprising an amino group R L -NH 2 , wherein R L is as defined and described in classes and subclasses of the present description, with a diester of squaric acid of formula (V): in suitable conditions to obtain a compound of formula (III); wherein R 2 is defined according to the classes and subclasses disclosed in the present invention.
- the synthesis of a compound of formula (III) comprises: providing a precursor compound of formula (VI): wherein Z, L 1 are defined according to the classes and subclasses disclosed in the present invention; reacting said compound of formula (VI) with a diester of squaric acid of formula (V), as defined herein, in suitable conditions to obtain a compound of formula (Illa 1 ): wherein R 2 is defined according to the classes and subclasses disclosed in the present invention.
- the compounds of formula (VI) may be prepared, for example, by reduction of the azide function, by methods and conditions for azide reduction well-known in the art, starting from the corresponding azide precursor disclosed in document WO2022096681.
- the synthesis of a compound of formula (III) comprises: providing a precursor of formula (VIla) or a precursor of formula (VIlla): wherein Z, L 1 , L 3 and R 2 are defined according to the classes and subclasses disclosed in the present invention; reacting said compound of formula (VIla) or said compound of formula (VIlla) with a compound of formula (IX), in suitable conditions to obtain, respectively, a compound of formula (Illa 4 ) or a compound of formula (Illa 5 ), wherein L 1 and L 3 are covalently linked by an amide moiety -N(R 1 )C(O)-, and wherein R 1 is defined according to the classes and subclasses disclosed in the present invention.
- Suitable conditions to react a compound of formula (VIla) or a compound of formula (VIlla) with a compound of formula (IX), as defined above herein are those well known in the art for peptidic coupling.
- Intermediates compounds of formula (VIla) and (VIlla) may be prepared from respectively the corresponding amino acid precursor of formulas (VIla’) and (VIlla’): with a compound of formula (V) in presence of a base and an alcoholic solvent, wherein L 2 and L 3 and the compound of formula (V) are defined according to the classes and subclasses disclosed in the present invention.
- the synthesis of a compound of formula (III) comprises: providing a precursor of formula (Vllb) or a precursor of formula (Vlllb):
- Z, L 2 , L 3 and R 2 are defined according to the classes and subclasses disclosed in the present invention; reacting said compound of formula (Vllb) or said compound of formula (Vlllb) with a compound of formula (IX), in suitable conditions to obtain, respectively, a compound of formula (Illa 2 ) or a compound of formula (Illa 3 ), wherein L 1 and L 2 are covalently linked by an amide moiety -N(R 1 )C(O)-, and wherein R 1 is defined according to the classes and subclasses disclosed in the present invention.
- Suitable conditions to react a compound of formula (Vllb) or a compound of formula (Vlllb) with a compound of formula (IX), as defined above herein are those well known in the art for peptidic coupling.
- Intermediates compounds of formula (Vllb) and (Vlllb) may be prepared from respectively the corresponding amino acid precursor of formulas (Vllb’) and (Vlllb’): with a compound of formula (V) in presence of a base and an alcoholic solvent, wherein L 2 and L 3 and the compound of formula (V) are defined according to the classes and subclasses disclosed in the present invention.
- the group Z is a peptide which may be prepared by any of the methods known in the art (such as peptide synthesis on solid support, according to standard procedures), and coupled with an amine group or a carboxylic group of a spacer L, as described above herein, in suitable conditions (for example, on solid support, according to standard procedures) to obtain an amide moiety.
- the process of preparing the compounds of formula (III) comprises reacting, suitable conditions, for example in aqueous conditions, a compound of formula (V) with the primary amine group of Z-NH 2 or Z-L-NH 2 to obtain the compound of formula (III).
- AAV vectors of the present invention can be used as a research tool.
- AAV vectors of the present invention can be used as a medicament, for instance in gene therapy as vectors for the delivery of therapeutic nucleic acids such as DNA or RNA.
- AAV vectors of the present invention can be used in a diagnostic means, e.g. as an imaging agent.
- AAV vectors of the present invention can be used as a combination of both a therapeutic and diagnostic tool, e.g., theragnostic use.
- chemical modifications of the capsid of an AAV vector may modify one, or several, of its biological functionalities and/or properties.
- biological functionalities and/or properties can depend on the nature of functional moiety R L which is introduced to modify the AAV vector in the present invention.
- one or more biological properties of a modified AAV vector can be altered compared to the unmodified AAV vector, such as: a modified selectivity of the AAV vector towards a specific organ, tissue, and/or cell type (e.g. an increased selectivity or a shifted selectivity from one tissue/organ/cell to another); and/or a modified immunoreactivity of the AAV vector, e.g.
- a decreased immunogenicity of the AAV vector and/or a decreased affinity for neutralizing antibodies triggers an altered humoral response when administered in vivo, e.g. does not generate AAV-directed neutralizing antibodies; and/or an increased infectivity efficiency of the AAV vector; and/or an increased transduction efficacy of the AAV vector towards a specific cell, tissue, and/or organ; and/or a reduced cellular toxicity when transducing cells in culture; and/or an induced cellular targeted mortality of cancer cells; and/or enabling the visualization/monitoring of the AAV vector upon in vivo administration or upon modification of cells in vitro; and/or enabling theragnostic applications; e.g. combining a therapeutic agent and a diagnostic agent.
- such modified properties may result in an improvement in the therapeutic index of the AAV vector.
- an improvement in the therapeutic index of the AAV vector can result from decreases in the relative dose of AAV to administer to the subject in order to achieve the sought therapeutic effect, such a reduction in dosage can decrease the relative toxicity of the AAV therapeutic regime.
- an AAV vector of the present invention shows a preferential tropism for an organ or cell selected from liver, heart, brain, joints, retina, and/or skeletal muscle.
- an AAV vector of the invention shows a preferential tropism for cultured cells selected from, but not limited to, hepatocytes, cardiomyocytes, myocytes, neurons, motor neurons, retinal pigmented cells, photoreceptors, chondrocytes, hematopoietic stem cells (HSC), and/or induced pluripotent stem cells (iPS).
- the present invention relates to an AAV vector according to the present invention, for use in transducing a cell of a subject.
- transducing a cell it is herein referred to delivering a nucleic acid into a cell.
- the transduced nucleic acid of interest may be of any type and is selected depending on the sought effect.
- the AAV vector according to the present invention when used for transducing a cell, it comprises a transgene.
- an AAV vector can comprise an exogenous gene expression cassette.
- said cassette may comprise a promoter, a gene of interest, and a terminator.
- an AAV vector of the invention may comprise a DNA template for homologous recombination in cells.
- such an AAV vector can be used in combination with gene editing tools, for promoting homologous recombination in targeted cells.
- the gene editing tools can be of any type, and encompass, without being limited to, CRISPR and its associated systems (including without limitation a Cas protein such as a Cas9 protein, or fusion protein thereof, a crRNA and tracrRNA, the latter two being either separate or linked together in a single gRNA), TALEN, Zinc Finger Nuclease, meganuclease, as well as RNA and DNA encoding said gene editing proteins and their associated systems.
- CRISPR and its associated systems including without limitation a Cas protein such as a Cas9 protein, or fusion protein thereof, a crRNA and tracrRNA, the latter two being either separate or linked together in a single gRNA
- TALEN Zinc Finger Nuclease
- meganuclease meganuclease
- the present invention also relates to use of an AAV vector according to the present invention for transducing a cell of a subject.
- the present invention also relates to a method for transducing a cell of a subject, comprising administering an AAV vector according to the present invention to said subject.
- the present invention also relates to a method of delivering a transgene to a cell, the method comprising contacting a cell with an AAV vector particle of formula (II), as defined and described in classes and subclasses disclosed in the present, and a nucleic acid to be expressed in the contacted cell, in particular the transgene to be expressed in the contacted cell.
- AAV vector particle of formula (II) as defined and described in classes and subclasses disclosed in the present
- the present invention also relates to a method for delivering a transgene into a cell of a subject, comprising administering an AAV vector according to the present invention comprising said transgene to said subject.
- the present invention further relates to an in vitro or ex vivo method for transducing a cell, comprising contacting said cell with an AAV vector according to the invention.
- the cell may be from a subject (e.g., a patient).
- the cell after transduction, the cell may be transplanted to a subject in need thereof (e.g., the patient, and/or another subject).
- an AAV vector can be administered to a cell in vivo, ex vivo, or in vitro.
- the cell may be derived from a mammal (e.g., humans, non-human primates, cows, mice, sheep, goats, pigs, rats, etc.)
- the cell may be derived from a human.
- the cell may be, but is not limited to, hepatocytes, cardiomyocytes, myocytes, neurons, motor neurons, retinal pigmented cells, photoreceptors, chondrocytes, hematopoietic stem cells (HSC), or induced pluripotent stem cells (iPS).
- AAV vectors according to the present invention specifically transduce any or several of the following cells: neurons (such as, e.g., pyramidal neurons, Purkinje neurons, spindle neurons, medium spiny neurons, and/or interneurons [e.g., Golgi cells, Lugaro cells, basket cells, stellate cells, candelabrum cells, unipolar brush cells, granule cells, Renshaw cells, la inhibitory neurons, lb inhibitory neurons, parvalbumin-expressing interneurons, CCK-expressing interneurons, VIP-expressing interneurons, SOM-expressing interneurons, cholinergic interneurons, tyrosine hydroxylase-expressing interneurons, calretinin-expressing interneurons, or nitric oxide synthase-expressing interneurons]), oligodendrocytes, astrocytes, microglial cells, ependymal cells, radial glia cells and/or pituicytes.
- neurons such as, e.g., pyramid
- AAV vectors according to the present invention do not specifically transduce one or more (or all) of the following cells: oligodendrocytes, astrocytes, microglial cells, ependymal cells, radial glia cells and/or pituicytes.
- an AAV vector according to the present invention can target a large variety of cells, tissues, and/or organs for treatment and/or prophylactic intervention.
- AAV vectors targets encompass, but are not limited to, hepatocytes; cells of the retina; i.e. photoreceptors, retinal pigmented epithelium (RPE), Muller cells; cells of the inner ear (e.g., inner and/or outer hair cells, Hensen’s cells, Deiter’s cells, pillar cells, inner phalangeal cells, border cells, etc.); muscle cells, i.e. myoblasts, satellite cells; cells of the central nervous system (CNS), i.e.
- CNS central nervous system
- tissues and organs which can be targeted by AAV include, eye, retina, ear, liver, skeletal muscle, cardiac muscle, smooth muscle, brain, spine, bone, connective tissue, heart, kidney, lung, lymph node, mammary gland, myelin, prostate, testes, thymus, thyroid, trachea, and the like.
- preferred cell types are hepatocytes, retinal cells, muscle cells, cells of the CNS, cells of the PNS and/or hematopoietic cells.
- preferred tissues and/or organs are liver, muscle, heart, eye, and/or brain.
- an AAV described herein is considered to target cells of the CNS if it targets one or more cell types that include retinal cells; in some embodiments, targeting retinal cells is not considered to represent CNS targeting.
- an AAV vector described herein may be particularly useful in gene therapy, e.g., to deliver a therapeutic nucleic acid of interest to a subject.
- the present invention also relates to an AAV vector according to the present invention, for use in gene therapy.
- the present invention also relates to a method of gene therapy in a subject in need thereof, comprising administering an AAV vector according to the present invention to said subject.
- an AAV of the invention can be delivered by any appropriate route to the subject.
- appropriate administration routes encompass, without being limited to, inhalational, topical, intra-tissue (e.g. intramuscular, intracardiac, intrahepatic, intrarenal), conjunctical (e.g. intraretinal, subretinal), mucosal (e.g. buccal, nasal), intra-articular, intravitreal, intracranial, intravascular (e.g. intravenous), intraventricular, intracisternal, intraperitoneal, and intralymphatic routes.
- the route of administration is selected depending on the targeted tissue and/or organ, namely, depending on the tissue and/or organ in which transduction is sought.
- AAV vectors according to the present invention are to be administered by intraspinal and/or intracerebral administration.
- AAV vectors according to the present invention are to be administrated intraspinally.
- intraspinal administration comprises or consists of intrathecal and epidural administration.
- intraspinal administration comprises or consists of intrathecal administration.
- AAV vectors according to the present invention are to be administrated intracerebrally.
- AAV vectors according to the present invention are to be administered intracerebrally, wherein the intracerebral administration is at a site selected from the group comprising or consisting of: striatum (such as, e.g., putamen, caudate nucleus, nucleus accumbens, olfactory tubercle, external globus pallidus and/or internal globus pallidus), thalamus, hypothalamus, epithalamus, subthalamus, parenchyma, cerebrum, medulla, deep cerebellar nuclei (such as, e.g., substantia nigra, dentate, emboliform, globose and/or fastigii nucleus), cerebrospinal fluid (CSF), meninges, dura mater, arachnoid mater, pia mater, subarachnoid cisterns (such as, e.g., cistema
- striatum such as
- AAV vectors according to the present invention are to be administrated intrastriatally (i.e., in the striatum, such as, e.g., in the putamen, caudate nucleus, nucleus accumbens, olfactory tubercle, external globus pallidus and/or internal globus pallidus), intrathalamically (i.e., in the thalamus), intraci stemally (i.e., in the subarachnoid cisterns, such as, e.g., in the cistema magna, pontine cistern, interpeduncular cistern, chiasmatic cistern, cistern of lateral cerebral fossa, superior cistern and/or cistern of lamina terminalis; preferably in the cisterna magna).
- the subarachnoid cisterns such as, e.g., in the cistema magna,
- conditions to be treated by administration of an AAV vector of the invention can be of any type.
- a condition to be treated may be selected from communicable diseases, and inherited as well as acquired genetic disorders.
- genetic disorders of interest encompass but are not limited to genetic muscle disorders such as Duchenne Muscular Dystrophy, leukodystrophy, spinal muscular atrophy (SMA), hemophilia, sickle disease, and inherited retinal dystrophy.
- AAV vectors of the present invention can also be used for treating disorders such as, but not limited to, cancers, arthritis, arthrosis, congenital and acquired cardiac diseases, Parkinson disease, Alzheimer’s disease, and infectious diseases (e.g., such as hepatitis C).
- disorders such as, but not limited to, cancers, arthritis, arthrosis, congenital and acquired cardiac diseases, Parkinson disease, Alzheimer’s disease, and infectious diseases (e.g., such as hepatitis C).
- AAV vectors described herein can be particularly useful for preventing and/or treating an ophthalmic disease. Accordingly, in some embodiments, the present invention also relates to AAV vectors according to the present invention, for use in the prevention and/or treatment of an ophthalmic disease. In some embodiments, the present invention further relates to the use of AAV vectors according to the present invention, for the manufacture of a medicament for prevention and/or treatment of an ophthalmic disease. In some embodiments, the present invention also relates to a method of preventing and/or treating an ophthalmic disease in a subject in need thereof, comprising administering AAV vectors according to the present invention to said subject.
- an AAV vector described herein may also be particularly useful for preventing and/or treating a CNS disease.
- “Central nervous system” or “CNS” refers to both the brain and the spinal cord and contrasts with the “peripheral nervous system” or “PNS” which excludes the brain and the spinal cord.
- the eye and in particular the retina is not considered to be part of the CNS.
- the eye and in particular the retina can be considered to be part of the PNS.
- the present invention also relates to modified AAV vectors according to the present invention, for use in the prevention or treatment of a CNS disease.
- the present invention further relates to use of modified AAV vectors according to the present invention, for the manufacture of a medicament for the prevention or treatment of a CNS disease.
- the present invention also relates to a method of preventing and/or treating a CNS disease in a subject in need thereof, comprising administering modified AAV vectors according to the present invention to said subject.
- a brain tissue may be or include the striatum, the thalamus, the substantia nigra, the parietal cortices, the hippocampus and/or the globus pallidus.
- the CNS site may be in the striatum.
- the CNS site may be in the thalamus.
- the CNS site may be in the cistema magna.
- the terms “prevent”, “preventing” and “prevention” refer to prophylactic and preventative measures, wherein the object is to reduce the chances that a subject will develop a given disease over a given period of time. Such a reduction may be reflected, e.g., in a delayed onset of at least one symptom of the disease in the subject.
- the terms “treating” or “treatment” or “alleviation” refer to therapeutic treatment, excluding prophylactic or preventative measures; wherein the object is to slow down (lessen) a given disease.
- Those in need of treatment include those already with the disease as well those suspected to have the disease.
- a subject is successfully “treated” for a given disease if, after receiving a therapeutic amount of an AAV vector according to the present invention, said subject shows observable and/or measurable reduction in or absence of one or more of the following: one or more of the symptoms associated with the disease; reduced morbidity and mortality; and/or improvement in quality of life issues.
- the above parameters for assessing successful treatment and improvement in the targeted disease are readily measurable by routine procedures familiar to a physician.
- the term “subject” refers to a mammal, preferably a human.
- a subject may be a “patient”, i.e., a warm-blooded animal, more preferably a human, who/which is awaiting the receipt of, or is receiving medical care or was/is/will be the object of a medical procedure, or is monitored for the development of a disease.
- a “mammal” refers here to any mammal, including humans, non-human primates, domestic and farm animals, and zoo, sports, or pet animals, such as dogs, cats, cattle, horses, sheep, pigs, goats, rabbits, etc.
- the mammal is a primate, more preferably a human.
- the present invention further relates to a composition comprising AAV vectors according to the invention.
- AAV vectors in the composition according to the present invention comprises at least one transgene.
- the composition is a pharmaceutical composition comprising an AAV vector according to the invention and at least one pharmaceutically acceptable vehicle.
- compositions that do not produce an allergic or similar untoward reaction when administered to a subject, preferably a human.
- pharmaceutical compositions should meet sterility, pyrogenicity, and general safety and purity standards as required by regulatory offices, such as, for example, FDA Office or EMA.
- pharmaceutically acceptable vehicles, excipients, carriers and preservatives that may be used in these compositions include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, proteins (such as, e.g., serum albumin, gelatin, immunoglobulins and the like), buffer substances (such as, e.g., phosphates, citrates or other organic acids, and the like), amino acids (such as, e.g., glycine, glutamine, asparagine, arginine, lysine and the like), antioxidants (such as, e.g., ascorbic acid and the like), chelating agents (such as, e.g., EDTA), sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes (such as, e.g., protamine sulfate, disodium hydrogen phosphate,
- proteins such as, e
- a pharmaceutical composition according to the present invention comprises vehicles which are pharmaceutically acceptable for a formulation intended for injection into a subject.
- these may be in particular isotonic, sterile, saline solutions (monosodium or disodium phosphate, sodium, potassium, calcium or magnesium chloride and the like or mixtures of such salts), or dry, especially freeze-dried compositions which upon addition, depending on the case, of sterilized water or physiological saline, permit the constitution of injectable solutions.
- a pharmaceutical composition according to the present invention comprise one or more agents that promote the entry of an AAV vector described herein into a mammalian cell, such as, e.g., natural and/or synthetic polymers, such as poloxamer, chitosan, cyclodextrins, dendrimers, poly(lactic-co-glycolic acid) polymers, and the like.
- agents that promote the entry of an AAV vector described herein into a mammalian cell such as, e.g., natural and/or synthetic polymers, such as poloxamer, chitosan, cyclodextrins, dendrimers, poly(lactic-co-glycolic acid) polymers, and the like.
- AAV vectors comprising at least one transgene according to the present invention is comprised as part of a medicament.
- the invention thus relates to a medicament comprising AAV vectors comprising at least one transgene according to the present invention.
- AAV vectors according to the present invention may comprise at least one transgene, selected in view of the intended use of an AAV vector.
- transgenes that can be useful for treatment of ophthalmic diseases or CNS diseases are provided hereafter.
- an eye is not considered to be a “CNS” site.
- an eye can be considered a “PNS” site.
- ophthalmic diseases include inherited retinal diseases.
- inherited retinal diseases include, but are not limited to, Leber’s congenital amaurosis, retinitis pigmentosa, retinitis punctata albescens, choroideremia, Stargardt disease, retinal dystrophies, choroidal dystrophies, cone dystrophies, cone-rod dystrophies, rod-cone dystrophies, macular dystrophies and macular degeneration, .
- ophthalmic diseases include communicable diseases, such as infectious diseases (e.g., viral, bacterial, fungal, etc.).
- an ophthalmic disease includes an injury.
- an ophthalmic disease includes an auto-immune disease.
- an ophthalmic disease includes a cancer.
- a CNS disease is a CNS infectious disease, a CNS degenerative disease, a CNS auto-immune disease, a CNS tumor disease, a cerebrovascular disease, a CNS injury, or a CNS structural defect.
- a CNS disease includes, but is not limited to, Alzheimer’s disease, Parkinson’s disease, Huntington’s disease, Friedreich’s ataxia, Canavan’s Disease, muscular dystrophy, spinal muscular atrophy, amyotrophic lateral sclerosis (ALS), Gaucher disease, adrenoleukodystrophy, Angelman syndrome, or epilepsy.
- Alzheimer’s disease Parkinson’s disease, Huntington’s disease, Friedreich’s ataxia
- Canavan’s Disease muscular dystrophy, spinal muscular atrophy, amyotrophic lateral sclerosis (ALS), Gaucher disease, adrenoleukodystrophy, Angelman syndrome, or epilepsy.
- a CNS disease is Parkinson’s disease or Gaucher disease. In some particular embodiments, a CNS disease is Parkinson’s disease. In some particular embodiments, a CNS disease is Gaucher disease.
- the gene involved in CNS diseases is the GBA gene, preferably the human GBA gene.
- AAV vectors of the present invention are capable of effectively transducing certain areas of the brain, including the striatum, the thalamus, the substantia nigra, the parietal cortices, the hippocampus and/or the globus pallidus.
- AAV vectors of the present invention are of great interest for targeting the striatum, the thalamus, the substantia nigra, the parietal cortices, the hippocampus and the globus pallidus, and/or for treating diseases affecting the striatum, the thalamus, the substantia nigra, the parietal cortices, the hippocampus and the globus pallidus.
- AAV vectors of the present invention are particularly suited for treating diseases of the striatum, the substantia nigra, the thalamus, the substantia nigra, the globus pallidus, the parietal cortices, and/or the hippocampus, such diseases include, but are not limited to, Huntington’s disease, Parkinson’s disease, multiple sclerosis atrophy, Lewis Body Dementia (LBD), progressive supranuclear palsy and Angelman syndrome.
- diseases of the striatum, the substantia nigra, the thalamus, the substantia nigra, the globus pallidus, the parietal cortices, and/or the hippocampus such diseases include, but are not limited to, Huntington’s disease, Parkinson’s disease, multiple sclerosis atrophy, Lewis Body Dementia (LBD), progressive supranuclear palsy and Angelman syndrome.
- LBD Lewis Body Dementia
- AAV vectors of the present invention are capable of effectively transducing neurons.
- a CNS disease is a neurological disease or a disease affecting neurons.
- AAV vectors of the present invention are capable of effectively transducing neurons involved in the control of motor function.
- a CNS disease is a disease affecting motor function.
- diseases affecting motor function include, but are not limited to, Parkinson’s disease and Huntington’s disease.
- a CNS disease is Parkinson’s disease
- an AAV vector of the present invention has at least one transgene comprising the cDNA from the GBA gene, preferably from the human GBA gene.
- a CNS disease is muscular dystrophy
- an AAV vector of the present invention has at least one transgene, wherein the transgene comprises cDNA of a gene selected from the group comprising or consisting of the DMD gene.
- a CNS disease is Gaucher disease
- an AAV vector of the present invention has at least one transgene, wherein the transgene comprises cDNA of the GBA gene.
- a gene may have multiple transcriptional and/or translational isoforms, and that a transgene comprising a cDNA of a gene described herein encompasses the potential use of transcriptional variants and/or splice variants of a target gene.
- modified AAV vectors according to the present invention are to be administered to a subject in need thereof in a therapeutically effective amount.
- modified AAV vectors according to the present invention are to be administrated at a dose ranging from about 10 8 viral genomes (vg) to about 10 15 vg, such as from about 10 8 vg to about 10 14 vg, from about 10 8 vg to about 10 13 vg, from about 10 8 vg to about 10 12 vg, from about 10 8 vg to about 10 11 vg, from about 10 8 vg to about 10 10 vg, from about 10 8 vg to about 10 9 vg, from about 10 9 vg to about 10 15 vg, from about 10 9 vg to about 10 14 vg, from about 10 9 vg to about 10 13 vg, from about 10 9 vg to about 10 12 vg, from about 10 9 vg to about 10 11 vg, from about 10 9 vg to about 10 10 vg, from about 10 10 vg to about 10 15 vg, from about 10 10 vg to
- vector genome refers to one or more polynucleotides comprising a set of the polynucleotide sequences of a vector, e.g., a viral vector.
- a vector genome may be encapsidated in a viral particle.
- a vector genome may comprise single-stranded DNA, double- stranded DNA, or single- stranded RNA, or double-stranded RNA.
- a vector genome may include endogenous sequences associated with a particular viral vector and/or any heterologous sequences inserted into a particular viral vector through recombinant techniques (e.g., a transgene).
- the nucleic acid titer of a viral vector may be measured in terms of vg/mL. Methods suitable for measuring this titer are known in the art, and include, e.g., quantitative PCR.
- the term “about”, when set in front of a numerical value, means that said numerical value is approximate and small variations would not significantly affect the practice of the disclosed embodiments. Such small variations are, e.g., of ⁇ 1%, ⁇ 2%, ⁇ 3%, ⁇ 4%, ⁇ 5%, ⁇ 6%, ⁇ 7%, ⁇ 8%, ⁇ 9%, ⁇ 10% or more.
- modified AAV vectors according to the present invention are to be administrated at a dose of about 1 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 2 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 2.75 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 3 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 4 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 5 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 6 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 7 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 8 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 9 ⁇ 10 8 vg ⁇ 0.5 ⁇ 10 8 , about 1 ⁇ 10 9 vg ⁇ 0.5 ⁇ 10 9 , about 2 ⁇ 10 9 vg ⁇ 0.5 ⁇ 10 9 , about 3 ⁇ 10 9 vg ⁇ 0.5 ⁇ 10 9 , about 4 ⁇
- modified AAV vectors according to the present invention are to be administrated at a dose of about 1 ⁇ 10 6 vg/kg ⁇ 0.5 ⁇ 10 6 , about 2 ⁇ 10 6 vg/kg ⁇ 0.5 ⁇ 10 6 , about 3 ⁇ 10 6 vg/kg ⁇ 0.5 ⁇ 10 6 , about 4 ⁇ 10 6 vg/kg ⁇ 0.5 ⁇ 10 6 , about 5 ⁇ 10 6 vg/kg ⁇ 0.5 ⁇ 10 6 , about 6 ⁇ 10 6 vg/kg ⁇ 0.5 ⁇ 10 6 , about 7 ⁇ 10 6 vg/kg ⁇ 0.5 ⁇ 10 6 , about 8 ⁇ 10 6 vg/kg ⁇ 0.5 ⁇ 10 6 , about 9 ⁇ 10 6 vg/kg ⁇ 0.5 ⁇ 10 6 , about 1 ⁇ 10 7 vg/kg ⁇ 0.5 ⁇ 10 7 , about 2 ⁇ 10 7 vg/kg ⁇ 0.5 ⁇ 10 7 , about 3 ⁇ 10 7 vg/kg ⁇ 0.5 ⁇ 10 6
- the dose of modified AAV vectors required to achieve a desired effect or a therapeutic effect will vary based on several factors including, but not limited to, the specific route of administration, the level of gene, RNA or protein expression required to achieve a therapeutic effect, the specific disease being treated, and the stability of the gene, RNA, and/or protein product.
- a person skilled in the art can adjust dosing and/or determine a dose range to treat a particular subject and/or a particular disease based on the aforementioned factors, as well as other factors that are well known in the art.
- the volume of modified AAV vectors administered to a subject will also depend, among other things, on the size of the subject, the dose of the AAV vector required to obtain therapeutic effect, the concentration of the AAV vector, and the proposed route of administration.
- the rate of administration of AAV vectors delivered to a subject will also depend, among other things, on the size of the subject, the dose of the AAV vector required to obtain therapeutic effect, the concentration of the AAV vector, the volume of the AAV vector solution, and the proposed route of administration.
- a rate of administration ranging from about 0.1 ⁇ L/min to about 1 ⁇ L/min or from about 1 ⁇ L/min to about 5 ⁇ L/min or from about 5 ⁇ L/min to about 10 ⁇ L/min can be used.
- the rate of administration of AAV vectors administered to a subject is of about 0.1 ⁇ L/min ⁇ 0.05 ⁇ L/min, about 0.2 ⁇ L/min ⁇ 0.05 ⁇ L/min, about 0.3 ⁇ L/min ⁇ 0.05 ⁇ L/min, about 0.4 ⁇ L/min ⁇ 0.05 ⁇ L/min, about 0.5 ⁇ L/min ⁇ 0.05 ⁇ L/min, about 0.6 ⁇ L/min ⁇ 0.05 ⁇ L/min, about 0.7 ⁇ L/min ⁇ 0.05 ⁇ L/min, about 0.8 ⁇ L/min ⁇ 0.05 ⁇ L/min, about 0.9 ⁇ L/min ⁇ 0.05 ⁇ L/min, 1 ⁇ L/min ⁇ 0.5 ⁇ L/min, about 2 ⁇ L/min ⁇ 0.5 ⁇ L/min, about 3 ⁇ L/min ⁇ 0.5 ⁇ L/min, about 4 ⁇ L/min ⁇ 0.5 ⁇ L/min, about
- the total dose or total volume of AAV vectors may be administered continuously (i.e., wherein the total dose or total volume of modified AAV vectors is injected in a single shot or infusion); or discontinuously (i.e., wherein fractions of the total dose or total volume of AAV vectors are injected with intermittent periods between each shot, preferably with short intermittent periods such as periods of time of 15 seconds, 30 seconds, 45 seconds, 1 minute, 2 minutes, 3 minutes, 4 minutes, or 5 minutes between each shot or infusion).
- kits and kits-of-parts for: - transducing a cell of a subject; and/or - delivering a transgene to a subject; and/or - preventing and/or treating a disease in a subject.
- the kits or kits-of-parts comprise one or more AAV vectors and/or compositions according to the present invention.
- the kits or kits-of-parts further comprise a device for delivery of one or more AAV vectors and/or compositions according to the present invention.
- the kits further include instructions for delivery of one or more AAV vectors and/ or compositions according to the present invention.
- kits comprise instructions for preventing and/or treating a targeted disease, using the compositions, and/or methods described herein.
- kits described herein may further include other materials desirable from a commercial and user standpoint, including buffers, diluents, filters, needles, syringes, and/or package inserts with instructions for performing any methods described herein.
- BRIEF DESCRIPTION OF THE FIGURES [0407] Figure 1: GFP staining of mouse brain slices at the striatal level after a single bilateral injection of AAV2-GFP or (3)-AAV2-GFP in the striatum.
- the starting products used are commercial products or products prepared according to known synthesis from commercial compounds or known to one skilled in the art.
- the structures of the compounds described in the examples were determined according to the usual spectrophotometric techniques (nuclear magnetic resonance (NMR), liquid chromatography-mass spectrometry (LC/MS) and purity was determined by high performance liquid chromatography (HPLC)).
- Synthesis intermediates and compounds of the invention are named according to the IUPAC (The International Union of Pure and Applied Chemistry) nomenclature and described in their neutral form.
- Step 2 5-((2-ethoxy-3,4-dioxocyclobut-1-en-1-yl)amino)picolinic acid
- 3,4-diethoxycyclobut-3-ene-1,2-dione 572 mg.
- the resulting precipitate was filtered off, washed with H 2 O, and dried to deliver desired intermediate as a yellow solid (609 mg, 76% yield).
- Step 2 Synthesis of 3-ethoxy-4-((2-(2-(2-(((3S,4S,5S,6R)-3,4,5-trihydroxy-6- (hydroxymethyl) tetrahydro-2H-pyran-2-yl)oxy)ethoxy)ethoxy)ethyl) amino)cyclobut-3- ene-1,2-dione [0429] To a solution of previous compound (150 mg) in EtOH was added under argon atmosphere TEA (0.09 mL) followed by 3,4-diethoxycyclobut-3-ene-1,2-dione (90 mg).
- reaction mixture was then washed twice with 2M HCl (2x40 mL), water (50 mL), dried over MgSO 4 , filtered, and concentrated under reduced pressure.
- the resulting yellow oil was dissolved in dry DCM (100 mL) under argon atmosphere, the solution was cooled down to 0°C, and treated with trichloroacetonitrile. After being stirred for 1h at 0°C, DBU (0.38 mL) was added, the reaction mixture was stirred at 0°C for 1h, and next at room temperature for 1 hour.
- Step 2 Preparation of a mixture of (2R,3R,4S,5S)-2-(acetoxymethyl)-6-((2,2- dimethyl-4-oxo-3,8,11,14,17-pentaoxa-5-azanonadecan-19-yl)oxy)tetrahydro-2H- pyran-3,4,5-triyl triacetate and (2R,3R,4S,5S)-2-(acetoxymethyl)-6-((14-amino- 3,6,9,12-tetraoxatetradecyl)oxy) tetrahydro-2H-pyran-3,4,5-triyl triacetate:
- the reaction mixture was stirred for 30 minutes at 0°C and next was allowed to stir at room temperature overnight.
- the solvent was removed under reduced pressure to obtain 580 mg of the crude product.
- the residue was purified by Reverse Phase flash column chromatography using ACN/H 2 O as eluent to obtain 112 mg (31% yield) of pure compound.
- the obtained product was then dissolved in 7N NH3 in MeOH and stirred at room temperature overnight. The solvent was removed under reduced pressure to dryness.
- the crude product was used for the next step without further purification (85 mg, quantitative yield).
- Step 4 Preparation of compound (4), 3-ethoxy-4-((14-(((3S,4S,5S,6R)-3,4,5- trihydroxy-6-(hydroxymethyl) tetrahydro-2H-pyran-2-yl)oxy)-3,6,9,12-tetraoxatetra decyl)amino)cyclobut-3-ene-1,2-dione [0439] To a solution of previous compound (80 mg) in EtOH was added TEA (44 ⁇ L).
- Example 1.5 Synthesis of compound (5): 3-((3',6'-dihydroxy-3-oxo-3H-spiro[isobenzofuran-1,9'-xanthen]-5-yl)amino)-4-ethoxy cyclobut-3-ene-1,2-dione [0440] A mixture of commercially available of 5-aminofluorescein (50 mg) and 3,4- diethoxycyclobut-3-ene-1,2-dione (25 mg) in anhydrous EtOH under argon atmosphere was cooled down to 0°C. Then, DIPEA (28 ⁇ L) was added to the solution, and the reaction mixture was allowed to stir at room temperature overnight.
- reaction mixture was next washed with 2M HCl (2x200 ml), water (200 mL), and dried over Na 2 SO 4 , filtered, and concentrated under reduced pressure.
- the resulting yellow oil was dissolved in dry DCM under argon atmosphere, the solution was cooled down to 0 °C, and treated with trichloroacetonitrile (25.7 mL). After being stirred for 1 hour at 0 °C, DBU (0.76 mL) was added, the reaction mixture was stirred at 0 °C for 1 hour, and next at room temperature overnight.
- Step 5 4-((2-ethoxy-3,4-dioxocyclobut-1-en-1-yl)amino)-N-(2-(2-(2- (((3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2-yl)oxy) ethoxy)ethoxy)ethyl)benzamide
- 4-((2-ethoxy-3,4-dioxocyclobut-1-en-1- yl)amino)benzoic acid described in preparation 2 256 mg
- HATU 372 mg
- DIPEA 0.43 mL
- Step 2 synthesis of (2R,3R,4S,5S)-2-(acetoxymethyl)-6-(2- azidoethoxy)tetrahydro-2H-pyran-3,4,5-triyl triacetate
- NaN 3 800 mg
- the solvent was removed under reduced pressure, and the crude material was treated with EtOAc, and filtered.
- the filtrate was concentrated under reduced pressure, and the residue was purified by flash chromatography with hexane/EtOAc as eluent to afford desired product as a colorless oil (600 mg, 93% yield).
- Step 4 synthesis of (3S,4S,5S,6R)-2-(2-aminoethoxy)-6- (hydroxymethyl)tetrahydro-2H-pyran-3,4,5-triol [0463] To a solution of compound obtained at previous step (358 mg) in MeOH was added 10% Pd/C under gentle flow of argon. The inert gas was evacuated and backfilled with hydrogen (in total three times). The reaction mixture was stirred under hydrogen atmosphere (balloon) overnight. The resulting mixture was filtered through a pad of Celite, washed with MeOH, and concentrated under reduced pressure to afford the product as a colorless oil. The crude product was used for the next step without further purification (320 mg, quantitative yield).
- Step 5 synthesis of 4-((2-ethoxy-3,4-dioxocyclobut-1-en-1-yl)amino)-N-(2- (((3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2- yl)oxy)ethyl)benzamide [0465] To a stirred solution of intermediate 4-((2-ethoxy-3,4-dioxocyclobut-1-en-1-yl)amino)-N-(2- (((3S,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-2- yl)oxy)ethyl)benzamide [0465] To a stirred solution of intermediate 4-((2-ethoxy-3,4-dioxocyclobut-1-en-1-yl)amino)-N-(2- (((3S,4S,5S,6
- Step 2 synthesis of (((2R,3R,4S,5S)-6-(2-(2-(2-azidoethoxy)ethoxy)ethoxy)- 3,4,5-tris(benzyloxy)tetrahydro-2H-pyran-2-yl)methoxy)(tert-butyl)dimethylsilane [0469] Compound obtained at previous step (1.0 g) was dissolved in anhydrous DMF under argon atmosphere, and the solution was cooled down to 0°C.
- Step 4 synthesis of ((2R,3R,4S,5S)-6-(2-(2-(2-azidoethoxy)ethoxy)ethoxy)- 3,4,5-tris(benzyloxy)tetrahydro-2H-pyran-2-yl)methyl dibenzyl phosphate [0473] To a suspension of compound obtained at previous step (550 mg) and 4 ⁇ molecular sieves in anhydrous DCM was added under argon atmosphere a solution of tetrazole – 0.45M in ACN (6.2 mL).
- Step 5 synthesis of ((2R,3R,4S,5S)-6-(2-(2-(2-aminoethoxy)ethoxy)ethoxy)- 3,4,5-tris(benzyloxy)tetrahydro-2H-pyran-2-yl)methyl dibenzyl phosphate [0475] To a suspension of compound obtained at previous step (200 mg) in a mixture of THF/H 2 O was added PPh 3 (91 mg). The reaction mixture was stirred overnight at RT, then extracted with EtOAc.
- Step 6 synthesis of dibenzyl (((2R,3R,4S,5S)-3,4,5-tris(benzyloxy)-6-(2-(2-(2- (4-((2-ethoxy-3,4-dioxocyclobut-1-en-1- yl)amino)benzamido)ethoxy)ethoxy)ethoxy)tetrahydro-2H-pyran-2-yl)methyl) phosphate [0477] To a mixture of intermediate 4-((2-ethoxy-3,4-dioxocyclobut-1-en-1- yl)amino)benzoic acid described in preparation 2 (30 mg), HATU (43 mg) and DIPEA (0.05 mL) in DMF was added under argon atmosphere compound obtained at previous (80 mg).
- Step 7 synthesis of ((2R,3S,4S,5S)-6-(2-(2-(2-(4-((2-ethoxy-3,4-dioxocyclobut- 1-en-1-yl)amino)benzamido)ethoxy)ethoxy)ethoxy)-3,4,5-trihydroxytetrahydro-2H- pyran-2-yl) methyl dihydrogen phosphate
- Pd/C 10% under argon atmosphere.
- the reaction mixture was stirred under hydrogen atmosphere (a balloon) until starting material was consumed, then filtered through a pad of Celite. The filtrate was evaporated to dryness under reduced pressure.
- Conjugated AAVs were generated by coupling the squarate moieties of the invention to at least one AAV surface-exposed primary amine as described below. II.1. Production and purification of AAVs. [0497] AAVs were produced and purified according to well-known techniques in the art. II.2. Production and purification of chemically-conjugated AAVs. Materials [0498] Compounds (1)-(11), (13)-(17) and (19)-(23) were obtained as detailed above in Example 1.
- AAV2-eGFP 1.0E13 vg/mL in DPBS + Ca 2+ , Mg 2+ , 0.001% Pluronic F68 at pH 7.4
- AAV5-eGFP 1.0E13 vg/mL in DPBS + Ca 2+ , Mg 2+ , 0.001% Pluronic F68 at pH 7.4
- - AAV9-eGFP 1.0E13 vg/mL in DPBS + Ca 2+ , Mg 2+ , 0.001% Pluronic F68, at pH 7.4.
- the rate of conjugation can also be modulated based on the design of linkers, offering a versatile approach to achieve varying ligand loading on AAVs.
- Parallel assessment of ligand stability in either buffer showed that over 90% of the ligand presented an intact structure after 24h of incubation.
- II.3.c. Infectivity assay U87-MG glioblastoma cells
- U87-MG cells were transduced at MOI 1E5 with (1)-AAV2, (2)-AAV2, or (3)- AAV2 vectors and were analyzed 72h after transduction via monitoring of transduced (eGFP-positive) and non-transduced cell population by fluorescence microscopy.
- eGFP-positive transduced
- non-transduced cell population by fluorescence microscopy.
- HEK-293 cells overexpressing the human transferrin receptor (HEK- TfR1(+)) were transduced at an MOI of 1E4 with (13)-AAV9, (16)-AAV9, or (23)-AAV9 vectors. Twenty-four (24) hours post-infection, transduction was measured by quantitative PCR to determine the number of vector genome copiesper cell. [0509] Results: Ten (10) copies per cell were measured for (13)-AAV9 and (16)-AAV9 vectors. Twenty-eight (28) copies per cell were measured for the (23)-AAV9 vector. [0510] Conclusion: AAV9 vectors conjugated with peptide-based ligands were infectious in HEK-TfR1(+) cells.
- EXAMPLE 3 EVALUATION OF THE TRANSDUCTION PROPERTIES OF TWO AAV VECTORS, INCLUDING A CONJUGATED VECTOR, IN THE MOUSE BRAIN
- the objective of the study was to investigate the transduction properties of two recombinant AAV2 vectors expressing GFP (AAV2 and (3)-AAV2) in the mouse brain following a single bilateral intrastriatal injection.
- Materials Animals [0512] Six (6) adult male C57BL/6 mice (Mus musculus), purchased from Charles River Laboratories. Test items [0513] “AAV2” is a recombinant AAV2 vector comprising an unmodified capsid and carrying a CAG-eGFP expression cassette.
- “(3)-AAV2” is a recombinant AAV2 vector comprising a modified capsid with surface-bound mannose linkers and carrying a CAG-eGFP expression cassette.
- Methods Test items [0515] Compound of formula (III) was covalently attached to primary amino group from amino acids exposed at the surface of the capsid after a 4-hr co-incubation with the AAV2 vectors in Tris buffer pH 9.3 at 20°C. Formulation and elimination of free molecules that did not bind to the AAV capsid were performed by Tangential Flow Filtration of the mix against buffered saline sterile solution (BSSS) + 0.001% poloxamer. Conjugated AAV solution was 0.22 ⁇ m-filtered.
- BSSS buffered saline sterile solution
- mice underwent stereotactic surgery and were randomly injected with the test items into the striatum, according to Table .
- Surgical procedures [0517] Anesthesia was maintained during surgery with a concentration of 1.5-2 % isoflurane. For pain management, Buprenorphine 0.04 mg/kg was administered s.c. Each animal was placed in a stereotaxic apparatus. A midline incision of the scalp was made. Holes were drilled above the target regions, using Bregma as a reference point. A 33G Hamilton syringe was used to inject the test items. The injection rate of the test item solution was 0.25 ⁇ L/minute. After injection, wounds were closed with a surgical suture.
- GFP Immunofluorescence [0519] All steps were executed in Dulbecco’s phosphate buffered saline pH 7.2-7.8 (DPBS) at room temperature unless noted otherwise. Cryosections were air-dried and washed. Unspecific binding sites were blocked, and sections were washed. Sections were incubated with primary antibodies in 1% normal donkey serum/DPBS overnight at 4°C: Goat anti-GFP polyclonal antibody (Abcam, ab5450; 1:5000). Sections were washed and incubated with the secondary antibody: Donkey anti-goat IgG (H+L), Alexa Fluor 488 (Abcam, ab150129), 1:500.
- DPBS phosphate buffered saline pH 7.2-7.8
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| EP24704017.3A EP4662322A1 (en) | 2023-02-10 | 2024-02-09 | Squaramide-modified adeno-associated virus vectors |
| KR1020257030036A KR20250143841A (en) | 2023-02-10 | 2024-02-09 | Square amide-modified adeno-associated virus vector |
| AU2024217462A AU2024217462A1 (en) | 2023-02-10 | 2024-02-09 | Squaramide-modified adeno-associated virus vectors |
| IL322465A IL322465A (en) | 2023-02-10 | 2024-02-09 | Squaramide-modified adeno-associated virus vectors |
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| WO2025021771A1 (en) * | 2023-07-21 | 2025-01-30 | Borea Therapeutics S.R.L. | Methods of preparing surface modified viral capsids |
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