WO2024013217A1 - Cover for a substrate plate of an enzymatic synthesis apparatus - Google Patents
Cover for a substrate plate of an enzymatic synthesis apparatus Download PDFInfo
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- WO2024013217A1 WO2024013217A1 PCT/EP2023/069281 EP2023069281W WO2024013217A1 WO 2024013217 A1 WO2024013217 A1 WO 2024013217A1 EP 2023069281 W EP2023069281 W EP 2023069281W WO 2024013217 A1 WO2024013217 A1 WO 2024013217A1
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- Prior art keywords
- cover
- enzymatic synthesis
- substrate plate
- support platform
- synthesis apparatus
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12M—APPARATUS FOR ENZYMOLOGY OR MICROBIOLOGY; APPARATUS FOR CULTURING MICROORGANISMS FOR PRODUCING BIOMASS, FOR GROWING CELLS OR FOR OBTAINING FERMENTATION OR METABOLIC PRODUCTS, i.e. BIOREACTORS OR FERMENTERS
- C12M21/00—Bioreactors or fermenters specially adapted for specific uses
- C12M21/18—Apparatus specially designed for the use of free, immobilized or carrier-bound enzymes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12M—APPARATUS FOR ENZYMOLOGY OR MICROBIOLOGY; APPARATUS FOR CULTURING MICROORGANISMS FOR PRODUCING BIOMASS, FOR GROWING CELLS OR FOR OBTAINING FERMENTATION OR METABOLIC PRODUCTS, i.e. BIOREACTORS OR FERMENTERS
- C12M23/00—Constructional details, e.g. recesses, hinges
- C12M23/02—Form or structure of the vessel
- C12M23/04—Flat or tray type, drawers
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12M—APPARATUS FOR ENZYMOLOGY OR MICROBIOLOGY; APPARATUS FOR CULTURING MICROORGANISMS FOR PRODUCING BIOMASS, FOR GROWING CELLS OR FOR OBTAINING FERMENTATION OR METABOLIC PRODUCTS, i.e. BIOREACTORS OR FERMENTERS
- C12M33/00—Means for introduction, transport, positioning, extraction, harvesting, peeling or sampling of biological material in or from the apparatus
- C12M33/02—Means for introduction, transport, positioning, extraction, harvesting, peeling or sampling of biological material in or from the apparatus by impregnation, e.g. using swabs or loops
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12M—APPARATUS FOR ENZYMOLOGY OR MICROBIOLOGY; APPARATUS FOR CULTURING MICROORGANISMS FOR PRODUCING BIOMASS, FOR GROWING CELLS OR FOR OBTAINING FERMENTATION OR METABOLIC PRODUCTS, i.e. BIOREACTORS OR FERMENTERS
- C12M33/00—Means for introduction, transport, positioning, extraction, harvesting, peeling or sampling of biological material in or from the apparatus
- C12M33/04—Means for introduction, transport, positioning, extraction, harvesting, peeling or sampling of biological material in or from the apparatus by injection or suction, e.g. using pipettes, syringes, needles
Definitions
- the present invention relates to the field of devices for the enzymatic synthesis of biomolecules, and more particularly devices for the synthesis of oligonucleotides such as RNA and DNA by inkjet printing.
- DNA and/or RNA polynucleotides are linear polymers of nucleotide monomers or analogues thereof that are capable of specifically binding to other oligonucleotides through a regular pattern of interactions between monomers.
- the size of polynucleotides generally varies from a few monomers, for example from 5 to 40 monomers when they are usually called "oligonucleotides", to several thousand monomers.
- polynucleotides include the four natural nucleotides, for example deoxyadenosine, deoxycytidine, deoxyguanosine, deoxythymidine for DNA or their ribose equivalents for RNA, linked by phosphodiester bonds; however, they may also include non-natural nucleotide analogues, for example modified bases, sugars or internucleoside linkages.
- an enzyme solution can be delivered to precise locations on a substrate comprising DNA and/or RNA initiator fragments.
- the enzymatic solution which contains synthesis reagents including enzymes, can for example be deposited on the substrate in the form of ink drops.
- an incubation step in a humid environment of the substrate may be necessary.
- This incubation step in a humid environment aims in particular to limit the evaporation of the ink drops and to ensure that the enzyme has the necessary time to catalyze elongation.
- the enzymatic synthesis process using an inkjet printing device involves steps other than ink deposition and incubation. Steps of deprotection of DNA or RNA fragments or washing are for example necessary at each elongation cycle, in order to ensure that the polynucleotides are formed according to the desired sequence, each of these steps involving the projection of a suitable liquid or the immersion of the substrate in this liquid. It is thus known to cyclically move the substrate and the fragments found there from a deprotection station to a station in which elongation is carried out then to a washing station. Each move is detrimental to the speed of the synthesis operation as a whole, and to its cost price.
- the present invention fits into this context and thus has as its main object an enzymatic synthesis apparatus configured for the synthesis of biomolecules, comprising a support platform comprising a reception zone configured to receive a substrate plate on which drops are arranged ink containing synthesis reagents, the enzymatic synthesis apparatus comprising a cover intended to cover the substrate plate, the cover being equipped with means for reversibly attaching to a frame of a covering station of the synthesis reagent enzymatic synthesis.
- the enzymatic synthesis apparatus allows the enzymatic synthesis of polynucleotides, for example fragments of interest or even complete biomolecules.
- the enzymatic apparatus includes several stations dedicated to different stages of such enzymatic synthesis, including a printing station comprising a printing device and a covering station.
- a substrate plate is movable between the different stations, that is to say it can be moved from one station to another, for example by computer control.
- This substrate plate can be moved via a support platform, which for this purpose comprises a reception area where the substrate plate can be deposited.
- This substrate plate is where enzyme synthesis occurs. It is in fact carrying initiator fragments intended to undergo an elongation step, which is carried out thanks to the synthesis reagents contained in the ink drops.
- These synthesis reagents include enzymes, which require a humid environment to optimally catalyze the elongation step.
- This humid environment can be implemented via a cover which is placed, on the support platform, covering the substrate plate. Such an overlap allows an incubation stage to be carried out.
- This cover comprises reversible attachment means to a frame of the covering station, which allows the cover to be detached from the frame to place it on the support platform covering the substrate plate and its attachment to the frame when the incubation stage is completed.
- the cover is configured to form with the support platform, when it is placed against this support platform, a fluid circulation conduit across which the substrate plate is placed. In this way, it is possible to leave the cover in position once it has been placed on the support platform and to carry out, without moving the support platform to change station within the enzymatic synthesis device, a deprotection operation. , by passing through the circulation conduit thus formed a deprotection solution containing specific reagents such as reducing agents or even enzymatic cleavage enzymes.
- the cover is equipped with a means of humidifying the substrate plate.
- the present invention thus aims to overcome some of the disadvantages previously mentioned, by proposing targeted regulation of humidity to optimize the regulation of the humidity of the substrate plate, in particular during an incubation step.
- Humidity is obtained through the humidification means integrated or connected to the cover.
- optimal humidity is achieved for the incubation step via a covering means which has reduced dimensions compared to the solutions of the prior art, this covering means being adapted to the dimensions of the substrate, and which thus makes it possible to limit the quantities of wet fluid required to ensure the desired humidity.
- the humidification means comprises a fluid inlet and a fluid outlet, said inlet and said outlet being provided in the cover.
- the humidification means thus makes it possible to convey fluid participating in humidification via the fluid inlet, and to evacuate it via the fluid outlet.
- These fluid inlets and outlets are provided in the lid; these are for example orifices arranged on the walls of this cover. Such orifices can advantageously be arranged at opposite ends of the cover, thus allowing the wet fluid to pass from one end of the cover to the other.
- the humidification means comprises a reservoir configured to allow humidity to pass from the reservoir to the substrate plate.
- Such a reservoir is configured to receive a saturated saline solution.
- the reservoir may in particular correspond to a housing for a cartridge of the saturated saline solution.
- this reservoir can be a compartment that can receive the solution via a syringe.
- the reservoir is provided in the cover.
- the reservoir corresponds to a release of material within the cover, which allows the storage of fluid in this cover. It is not necessary here that the tank be connected to the fluid inlet and outlet. Such an arrangement makes it possible to limit a quantity of fluid necessary for humidification, in comparison to a quantity of fluid necessary for the embodiments where the fluid passes through the cover from the inlet to the fluid outlet without being stored there.
- the reservoir can in particular be delimited by a low wall which retains the fluid within the reservoir, at a distance from the substrate plate, but which has an opening allowing the passage of humidity generated by the fluid.
- the tank is provided in the support platform and is connected to the inlet and outlet provided in the cover.
- the tank is no longer carried by the cover but by the support platform.
- the reservoir is provided in the support platform and comprises means for communicating with the substrate plate.
- the positioning of the cover on the support platform can for example result in the lowering of pins which otherwise constitute a barrier between the reservoir and the substrate plate.
- the cover comprises drying means, for example by supply ducts for blowing hot air.
- the cover comprises means for supplying a cleaning liquid and/or means for supplying a fluid capable of carrying out the deprotection of the end of a DNA fragment or RNA.
- the cover is equipped with a humidity sensor and/or a temperature sensor.
- Such sensors make it possible to implement humidity regulation operations according to the values recorded by this sensor, in order to ensure that a humidity level is conducive to the 'elongation.
- the reversible hooking means are configured to cooperate with reversible hooking members of the frame of the recovery station.
- the frame carries reversible hooking members which are the counterpart of the reversible hooking means carried by the cover.
- reversible attachment members are, for example, magnets or ferrous metal inserts.
- the reversible hooking means and/or the reversible hooking members comprise at least one electromagnet.
- Such an electromagnet allows the cover to be reversibly attached to the frame of the recovery station, or on the contrary tends to push the cover away from the frame, when an electric current passes through it; we understand that hooking and unhooking are done by magnetic attraction/repulsion. Of such reversible attachment means can be implemented quickly as soon as the cover is facing the frame.
- the reversible hooking means and/or the reversible hooking members comprise at least one permanent magnet.
- the reversible attachment means and/or the reversible attachment members may include a permanent magnet.
- the combination of these two types of magnets provides security in the event of electrical power outages which would deactivate the electromagnet, with the permanent magnet then ensuring the attachment alone.
- Such security makes it possible to prevent the lid from falling on the support platform in an untimely manner, particularly outside the incubation stage, or on the contrary that the lid remains permanently on the support platform and prevents the realization a subsequent step of printing the substrate plate.
- the reversible hooking members comprise at least one magnet.
- the reversible hooking members can also include an electromagnet, which is configured to participate in unhooking the cover and push the cover away from the frame, towards the support platform of the substrate plate.
- the reversible attachment means comprise at least one suction member.
- Such a suction member is an alternative to the electromagnets previously mentioned.
- This suction member is for example a suction cup which allows attachment by creating a vacuum.
- the support platform comprises reversible fixing systems, the reversible fixing systems cooperating with reversible fixing instruments arranged on a lower wall of the cover facing the support platform.
- reversible fixing means with the reversible fixing members, and for example magnets and/or vacuum members, can be applied in the same way to reversible fixing systems and instruments.
- the cover is fixed on the frame of the recovery station by the action of one or more electromagnets, configured to permanently retain the cover against the frame until current is injected into the electromagnets, which has the effect of pushing back the cover of the frame.
- This current is injected as the support platform passes under the cover station, so that the cover settles by gravity on the support platform.
- the cover is fixed on the frame of the covering station by the action of the reversible hooking means and the corresponding hooking members, such as permanent magnets or vacuum means.
- the support platform passes under the cover station, one or more electromagnets present on the support platform and/or one more electromagnets present on an underside of the cover facing the support platform are activated to attract the cover towards the cover. support platform and allow the positioning of this cover covering the substrate plate.
- the cover automatically returns to its place on the frame of the covering station, at a distance from the substrate plate, if necessary by being returned to position by means forming a spring.
- the reversible hooking and fixing elements are configured so that, in the event of a power supply failure, the cover remains hooked, or returns to a hooked position, to the frame of the covering station , at a distance from the substrate plate, so that it can continue the enzymatic synthesis cycle and be moved, without the cover being present, to other stations.
- the cover comprises a cavity sized to accommodate the substrate plate.
- This cavity forms a recess within the cover so as to accommodate the substrate plate.
- the cavity extends from a wall of the cover opposite a wall of said cover carrying the reversible attachment means.
- the humidification means is able to cooperate with the cavity.
- the humidification means may consist of a chamber formed within the cover, on the periphery of the cavity, with a low wall helping to delimit both the cavity and the chamber, the chamber being filled with 'a fluid suitable for generating humidity, the wall being dimensioned to form an opening for the passage of humidity from the chamber to the cavity while maintaining the fluid within the chamber, at a distance from the plate substrate housed in the cavity.
- the support platform and/or the cover are equipped with keying means.
- the cover is made at least partly of a transparent material.
- the use of a transparent material allows imaging operations to be performed on the substrate plate when it is covered by the cover.
- the cover includes a heating element.
- the heating element can promote the incubation step, by heating the substrate plate to an optimal temperature for incubation, and/or by heating the fluid intended to produce the humidity previously mentioned.
- a temperature is for example between 30°C and 70°C.
- the heating element can also help prevent condensation from forming on the cover, which could interfere with imaging operations.
- the invention further relates to a method of enzymatic synthesis by an enzymatic synthesis apparatus as mentioned above, comprising a first positioning step during which the support platform carrying the substrate plate is positioned, within a printing station, under a print head of the enzymatic synthesis apparatus so that the receiving zone of the substrate plate is positioned facing said print head, a printing step during in which ink drops containing synthesis reagents are deposited on the substrate plate, a second positioning step during which the support platform is positioned in the covering station facing the cover so that the substrate plate is positioned under the cover, and an unhooking step during which the cover is deposited on the support platform covering the substrate plate by a change of state of at least the reversible attachment means.
- the enzymatic synthesis method according to the invention therefore involves a first positioning step which makes it possible to place the support platform in a first position within a printing station, that is to say so that the substrate plate is facing the print head.
- the substrate plate is then ideally positioned for the printing step which results in a deposition of synthesis reagents on this substrate plate, via at least one of the projection nozzles forming the print head and which ejects ink containing these synthesis reagents.
- the support platform is moved again during the second positioning step to take a second position, in which the supporting receiving area of the substrate plate is placed under the support frame. the recovery station, and more particularly with regard to the cover attached to this frame.
- An unhooking step then occurs, during which the cover is unhooked from the frame and is placed on the support platform covering the substrate plate.
- Such an unhooking step involves the reversible hooking means, which are activated or deactivated to allow such unhooking.
- the change of state of the reversible attachment means when the support platform arrives in the covering station and the substrate plate is under the cover, makes it possible to move from a configuration where the cover is retained by the frame of the covering station has a configuration where the cover is deposited on top of the substrate plate.
- the reversible attachment means can be active or otherwise inactive when the cover is retained on the frame of the covering station.
- the reversible attachment means can change state so that the cover is deposited by gravity on the support platform of the substrate plate or so that the cover is attracted by the platform support and/or pushed back by the frame.
- these latter attraction/repulsion effects may in particular be due to an appropriate magnetic field or to a vacuum and positive pressure effect.
- the method comprises a humidification step occurring after the unhooking step, since the cover is positioned covering the substrate plate.
- the humidification stage occurs when the cover covers the substrate plate, that is to say when the latter is housed in the cavity of the cover.
- This humidification step involves the humidification means, by means of which the substrate plate is humidified in order to prevent the drying of the ink drops containing the synthesis reagents placed on the substrate plate.
- the method comprises a hanging step during which the cover is lifted and hung on the enzymatic synthesis apparatus.
- Such an attachment step, or fixation step is the opposite step of the unhooking step. It results in activation of the reversible attachment means, which allows the cover of the support platform to be lifted and attached to the frame of the covering station of the enzymatic synthesis apparatus.
- a distance between the support platform and the cover is less than two millimeters.
- Such a distance makes it possible on the one hand to avoid oversizing of the reversible hooking means and on the other hand to limit the impact of the shock between the cover and the support platform when at least the reversible hooking means change state and that the cover covers the substrate plate.
- the support platform is moved to an imaging station distinct from the printing station and the covering station .
- the support platform leaves the station recovery and is directed to one or more other stations of the enzymatic synthesis apparatus.
- the support platform can thus be taken to an imaging station where operations to verify the enzymatic synthesis are carried out.
- the support platform is moved to a cleaning station separate from the printing station and the covering station.
- the substrate plate can be washed or rinsed.
- Moving the support platform to the cleaning station occurs after the cover has been removed from the support platform, when this washing or rinsing requires the substrate plate to be accessible.
- the washing or rinsing operation can be carried out while the cover is placed on the support platform, covering the substrate plate.
- the cover may include means for circulating fluid, whether air or liquid, at a given temperature.
- the cover may also include means for circulating a fluid allowing the deprotection operation necessary for the enzymatic synthesis process.
- a pump is actuated to circulate a fluid between the inlet and outlet of the cover.
- the pump facilitates the circulation of fluid from one end of the cover to the other.
- the pump is fluidly connected to the cleaning station.
- FIG. 1 illustrates, schematically, an enzymatic synthesis apparatus according to the invention comprising a printing device, in a perspective view?
- FIG. 2 illustrates, schematically, a printing station comprising the printing device of Figure 1, a single projection nozzle being made visible here;
- FIG. 3 illustrates, schematically in top view, a cover according to a first aspect of the invention configured within the enzymatic synthesis apparatus of Figure 1 to cover a substrate plate made visible in dotted lines;
- FIG. 4 illustrates, schematically, the first embodiment of the cover of Figure 3 in a side view
- FIG. 5 illustrates, schematically, a second embodiment of the cover configured within the enzymatic synthesis apparatus of Figure 1 to cover a substrate plate, the cover here not being equipped with a window transparent closure;
- FIG. 6 illustrates, schematically, the second embodiment of the cover of Figure 5, in a side view, the cover here being equipped with a transparent closing window;
- FIG. 7 illustrates, schematically, a third embodiment of the cover configured within the enzymatic synthesis apparatus of Figure 1 to cover a substrate plate;
- FIG. 8 illustrates, schematically, the steps of an enzymatic synthesis process involving the enzymatic synthesis apparatus of Figure 1.
- characteristics, variants and different embodiments of the invention can be associated with each other, in various combinations, as long as they are not incompatible or exclusive. in relation to each other.
- variants of the invention comprising only a selection of characteristics described subsequently in isolation from the other characteristics described, if this selection of characteristics is sufficient to confer a technical advantage and/or to differentiate the invention. compared to the prior art.
- Figures i and 2 thus illustrate, schematically, an enzymatic synthesis apparatus comprising at least one inkjet printing device 1, such a printing device 1 being configured for the enzymatic synthesis of polynucleotides.
- These polynucleotides can be biomolecules such as DNA and/or RNA molecules, whether in the form of single strands or double strands.
- the printing device i comprises a print head 2 equipped with nozzles 4, one of these nozzles 4 being particularly visible in Figure 2.
- the printing device 1 is configured so that ink 6 can circulate from from the ink cartridges to the nozzles 4.
- the ink 6 used in the printing device 1 contains enzymatic synthesis reagents which are necessary for an elongation reaction.
- These enzyme synthesis reagents may include a nucleoside triphosphate, the 3' end of which is protected, as well as an elongation enzyme.
- This elongation enzyme can for example be a polymerase: if the molecule to be synthesized is a DNA molecule, the polymerase will be a DNA polymerase, while if an RNA molecule is sought, the polymerase will be an RNA. polymerase.
- the nucleoside triphosphate contained in the enzymatic synthesis reagents is protected, that is to say it is associated with a protecting group of formula -R1NR2 2 where Ri is chosen from H, O, -COOH, CN, a group linear or branched alkyl of 1 to 6 carbon atoms, an aryl group, preferably chosen from H, O, a linear or branched alkyl group of 1 to 6 carbon atoms, and where R 2 is chosen from H or an alkyl group linear or branched from 1 to 6 carbon atoms, so as to block its elongation.
- the protecting group is an aminoxyl.
- the ink 6 used in the printing device i can be stored in ink cartridges.
- the number of ink cartridges depends on the number of nucleoside triphosphates protected at their 3' end necessary for the elongation reaction and available in the printing device 1.
- These nucleoside triphosphates can be modified adenine, cytosine modified, modified guanine, modified thymine and/or modified uracil.
- a first ink cartridge 8 for the ink 6 containing the modified adenine and the elongation enzyme a second ink cartridge 10 for the ink 6 containing the modified cytosine and the elongation enzyme
- a third ink cartridge 12 for the ink 6 containing the modified guanine and the elongation enzyme a fourth ink cartridge 14 for the ink 6 containing modified thymine and/or modified uracil and elongation enzyme.
- each ink within the ink cartridges may comprise, alone or in combination with other reagents, a viscosity modifier, a surfactant, a dye which may be useful for subsequent imaging, a humectant, a cosolvent, a cofactor or others.
- the enzymatic synthesis reagents present in the ink 6 are intended to be deposited on a substrate plate 16.
- This substrate plate 16 can be glass, silica, silicon oxide, plastic, metal or similar surfaces, but also other surfaces such as for example biological tissues. It can be transparent, semi-transparent, opaque, colored or uncolored. It can also have a two-dimensional configuration, in particular with portions with hydrophobic or hydrophilic properties, or in three dimensions, with wells delimiting the reaction sites within them.
- Such a substrate plate 16 is here placed on a support platform 18, which will be described subsequently and which in particular allows the movement of the substrate plate 16 between various stations or operating stations of the enzymatic synthesis apparatus, or even within the same operating station.
- the substrate plate 16 is mobile within the enzymatic synthesis apparatus. Such mobility can for example be implemented by computer control, in particular via software installed on a computer.
- This substrate plate 16 is more particularly arranged on a reception zone 20 of the support platform 18.
- This reception zone 20 is carried by a partition of the support platform 18 which is opposite the print head 2.
- the receiving zone 20 is configured to receive the substrate plate 16 and hold it in position, for example during movements of the support platform 18 within the enzymatic synthesis apparatus.
- the substrate plate 16 includes several reaction sites. Each reaction site is distinct from other reaction sites and they do not overlap; in other words, the reaction sites are not contiguous. Each reaction site contains at least one initiator whose 3' end is free, also called initiator fragment. This initiator fragment is a short nucleotide fragment whose elongation results in a polynucleotide, which can be a DNA polynucleotide if the initiator fragment is a DNA fragment or even an RNA polynucleotide if the initiator fragment is a DNA fragment. 'RNA.
- the reaction sites are for example arranged in rows, these rows extending perpendicular to a longitudinal direction L corresponding to a main direction of extension of the substrate plate 16. The rows are arranged successively on the substrate plate 16 according to this longitudinal direction L.
- the enzymatic synthesis apparatus and its printing device 1 are implemented as part of a method for the enzymatic synthesis of such polynucleotides.
- This method of enzymatic synthesis involves various steps, with the completion of these steps forming a cycle. At the end of a cycle, at least some of the initiator fragments will have been elongated by one nucleotide each. The repetition of several cycles leads to the synthesis of polynucleotides, and the appropriate selection of the type of ink, that is to say the type of nucleoside triphosphates projected at a given time on a given reaction site, at each cycle allows to obtain polynucleotides of a predetermined sequence.
- the support platform 18 is mobile. It can thus be moved, within the enzymatic synthesis apparatus, to a printing station comprising the printing device 1 and within which of the ink 6 can be deposited on the substrate plate 16.
- the receiving zone 20 carrying the substrate plate 16 is positioned under the print head 2 of the printing station and more precisely under the projection nozzles 4 of this print head 2.
- the support platform 18 is in a first position which is illustrated in Figure 2.
- ink 6 is ejected by the nozzles 4, as shown in Figure 2.
- These nozzles 4 thus deliver drops of ink to the reaction sites of the substrate plate 16, which allows the deposition of enzymatic synthesis reagents in these reaction sites.
- Such deposition can be facilitated by the movement of the print head relative to the substrate plate 16, so that the nozzles 4 of this print head can be positioned successively opposite each row of reaction sites. More particularly, it is the substrate plate 16 and the support platform 18 which are moved relative to the print head but certain printing modes can provide that the substrate plate and the print head are all two able to move to optimize this deposit operation.
- the role of the elongation enzyme contained in ink 6 is to extend the initiator fragments present in the reaction sites, using nucleoside triphosphates modified so that their 3' ends are protected and which are also contained in ink 6. More precisely, the elongation enzyme adds a single modified nucleotide to a free 3' end of a terminating nucleotide of a given initiator fragment, which generates an elongated initiator fragment.
- nucleotides which are blocked at their 3' end for example with an aminoxyl protecting group, in a given drop of ink, once a first nucleotide modified in this way is grafted to the fragment initiator, no other nucleotide can be grafted since the free end of the strand thus formed is protected.
- only one of the nucleotides present in the drop is capable of being linked to the free terminating nucleotide of the initiator fragment. This protection ensures that Nucleotides are added to the initiator fragment one by one for each cycle, thus avoiding errors in the polynucleotide sequence.
- the elongation reaction can occur during an incubation step, which corresponds to a duration necessary for this elongation.
- a cover 22 is according to the invention placed on top of the substrate plate 16 to facilitate elongation.
- Such a cover 22 and its deposit on the support platform 20 will be described in more detail below.
- the benefit of this cover will be described in preventing the evaporation of the ink drops projected onto the substrate plate, in heating the drops during the incubation step and/or the imaging step, in make it possible to carry out deprotection, washing and drying functions in small volumes in particular by forming an appropriate fluid circulation conduit, and/or to allow in this context imaging in an appropriate imaging station.
- the enzymatic synthesis method subsequently comprises a deprotection step, during which the elongated fragments protected at their 3' ends are deprotected to form elongated fragments having a free 3' end.
- the deprotection step is therefore a removal of the protective groups from the elongated fragments, so that the elongated fragments can be elongated again in a subsequent cycle.
- the deprotection step is carried out by a deprotection solution which contains specific reagents such as reducing agents or even enzymatic cleavage enzymes.
- the substrate plate 16 carried by the support platform 18 can for example be immersed in a bath of this deprotection solution for the implementation of this deprotection step.
- the deprotection step can be followed by a cleaning step within a cleaning station of the enzymatic apparatus, during which the substrate plate 16 is immersed in a bath of washing or rinsing solution.
- the support platform can be lowered gently to the surface of a liquid, with the substrate plate devoid of a cover to facilitate immersion of the reaction sites.
- the cover can be left in position on the support platform and configured to form a circulation conduit of fluid between the substrate plate and itself, the deprotection solution then being pushed through this circulation conduit.
- the height of the fluid circulation conduit it is advantageous for the height of the fluid circulation conduit to be limited to a few millimeters, or to a few tens of millimeters at most, to limit the quantity of liquid used for the deprotection operation.
- the enzymatic synthesis apparatus may, as part of the operating stations mentioned above, include an imaging station.
- an imaging station which allows verification of the progress of the enzymatic synthesis, comprises a microscope incorporating a digital camera 24 which is implemented in the context of detecting the presence and/or positioning of the drops of ink on the substrate plate 16.
- the camera 24 thus generates images of the substrate plate 16.
- Such images are then processed by software integrated into the printing device 1, this software being capable of analyzing information such as the presence, absence, size, shape or even content of the ink drops deposited on the substrate plate 16, for example to ensure that the ink drops do not overlap or have not overwhelmed the reaction sites.
- the imaging station can be equipped with two cameras offset from each other relative to the substrate plate 16, to produce stereoscopic images.
- the cover 22 which is intended to cover the substrate plate 16, will now be described in more detail in relation to Figures 3 to 8.
- the cover 22 is configured to be deposited on the support platform 18 covering the substrate plate 16, at least for the duration of the incubation of the enzymatic synthesis, and removed from this according to a mechanism which will be described later.
- the cover can be left in position on the support platform for a longer or shorter time, between two inkjet printing operations during which the cover must be removed and return to its original position, away from the support plate.
- the cover 22 has a substantially parallelepiped shape. It is composed of longitudinal 26 and lateral 28 walls joined to each other to form the periphery of the cover.
- the cover 22 further comprises an upper wall 30 and a lower wall 32, which are opposed to each other and joined by the longitudinal walls 26 and lateral walls 28.
- the upper 30, lower 32, longitudinal 26 and lateral 28 walls define a volume of the cover 22.
- the cover 22 has a cavity 34 configured to accommodate the substrate plate 16 and dimensioned for this purpose when the cover is reported against the support platform.
- a cavity 34 is particularly visible in Figures 4 to 7.
- the cavity 34 corresponds to a recess within the volume of the cover 22 made from the lower wall 32.
- the dimensions of the cavity 34 are adapted to the dimensions of the substrate plate, in particular so that all of the reaction sites are covered by the cover without the cover crushing one of the reaction sites.
- the dimensions of the cavity are adapted so that the entire substrate plate is housed inside the cavity and that the lower wall 32 of the cover is in contact with the support platform and not with the edges of the substrate plate.
- the cover 22 makes it possible to facilitate the elongation of the initiator fragment and/or of the polynucleotide being elongated, during the incubation step. It is in fact necessary, for this elongation to take place under optimal conditions, to ensure that the drops of ink which have been deposited on the substrate plate 16 do not dry and to avoid their evaporation during the processing. incubation period necessary for this elongation.
- THE cover 22 is for this purpose equipped with a means of humidifying the substrate plate 16.
- Different means can also be integrated into the cover, such as for example, without this list being exhaustive, at least one among means for heating the substrate plate, means for heating transparent walls which can equip the cover to avoid condensation on these transparent walls, or means forming passages for a liquid or air within the cover, additionally or alternatively to the presence of the circulation conduit previously mentioned and formed between the cover and the platform support.
- the humidification means comprises a reservoir 35 provided in the cover 22.
- the reservoir 35 is configured to receive a fluid allowing the humidification of the substrate plate, which is for example a saturated saline solution.
- the fluid intended to be loaded into the tank can be preheated, or heated during the process.
- the reservoir 35 thus constitutes a storage space for the fluid allowing humidification.
- the reservoir 35 can for this purpose be a cartridge of the saturated saline solution or even a compartment capable of receiving this solution via a syringe.
- a saturated saline solution may for example comprise ammonium nitrate, ammonium sulfate, magnesium chloride, magnesium nitrate, lithium chloride, potassium sulfate, potassium chloride, acetate potassium hydroxide, sodium chloride, sodium nitrite, sodium dichromate, or a mixture of two or more of these elements.
- a choice among these solutions can be made depending on the desired humidity level.
- the humidification means here the reservoir 35, is able to cooperate with the cavity 34.
- the saturated saline solution can thus load with humidity, from the reservoir 35, the air present or brought to penetrate into the cavity 34 of the cover 22.
- the reservoir 35 is arranged within the volume of the cover 22 and it extends close to the upper wall 30, at a distance from each of the longitudinal 26 and lateral walls 28.
- the reservoir 35 may consist of a clearance of material formed within the cover 22 from the upper wall, to receive a cartridge of humidification product, or else consist in a closed cavity within the cover, intended to directly receive humidification product.
- the reservoir 35 is moreover substantially parallel to planes in which this cavity 34 and the substrate plate 16 mainly extend, so that the reservoir 35, the cavity 34 and the substrate plate 16 when it is received in the cavity are superimposed in this order from the upper wall to the lower wall of the cover.
- the positioning of the reservoir, covering the substrate plate can interfere with the imaging necessary after incubation to ensure that the reaction sites are filled as desired, and it It may be preferable to remove the cover to perform these imaging operations.
- the tank can be equipped with transparent windows, with one which forms part of the upper wall of the cover and the other which is placed between the tank and the cavity, imaging can be carried out through the transparent windows and the fluid present in the reservoir as long as the fluid, which is for example the saline solution, does not present swirls or bubbles on the surface.
- the reservoir 35 is again arranged within the volume of the cover 22, but this time around the cavity.
- the reservoir 35 forming the humidification means is a chamber delimited laterally by a low wall 37 helping to delimit both the cavity 34 and the chamber 35.
- a fluid capable of generating humidity is placed at the bottom of the chamber 35 and the humidity can pass into the cavity 34 via a passage 370 made between the chamber and the cavity opposite the bottom wall of the chamber.
- the low wall 37 extends partially over the height of the chamber to form the passage between the chamber and the cavity.
- the wall 37 is configured so that the humidity can pass from the chamber to the cavity while maintaining the fluid within the chamber, at a distance from the substrate plate housed in the cavity.
- the longitudinal walls 26 and side walls 28 have a recess 27 to form a receiving surface for a transparent window 39, visible in Figure 6 and forming part of the upper wall 30.
- the positioning of the reservoir, on the periphery of the cavity does not interfere with the imaging which is carried out through the transparent window, and it is possible to leave the cover in place.
- Figure 6 makes visible a possible characteristic of the invention according to which the cover, here in the chamber 35, can be equipped with heating means 41 making it possible here to maintain the fluid in a state generating humidity.
- heating means can be active means, controllable remotely for example, or else passive means such as Kapton sheets for example.
- the reservoir 35 can be filled with a fluid intended to remain within the reservoir during all of the cycles of enzymatic synthesis, that is to say during several successive incubation periods.
- the fluid can be emptied and the tank refilled at each cycle.
- the cover comprises a fluid inlet 36 as well as a fluid outlet 38. More precisely, the fluid inlet 36 and the fluid outlet 38 are channels each provided in one of the walls of the cover, here the longitudinal walls. The fluid inlet 36 and the fluid outlet 38 open more specifically into the cavity 34, so that they communicate fluidly with this cavity 34.
- the fluid inlet 36 and the fluid outlet 38 can be arranged facing each other. 'one from the other on opposite walls of the cover 22, without this however being limiting to the invention.
- the number of fluid inlets and fluid outlets provided in this second embodiment can be variable as long as there is at least one fluid inlet.
- the fluid inlet 36 thus makes it possible to convey fluid within the cover 22 and the possible fluid outlet 38 makes it possible to evacuate it if necessary.
- the fluid circulating from the fluid inlet 36 to the fluid outlet 38 may be a wet fluid, for example a mixture of dry gas and water, the passage of which aims to ensure the humidification of the substrate plate 16 when the cover 22 covers it.
- the fluid inlet and the fluid outlet form a humidification means, which ensures the humidification of the substrate plate 16 when the cover 22 covers it.
- a humid fluid can be generated by a device such as a central humidifier, a turbine humidifier, an ultrasonic humidifier, an evaporator or even a steam vaporizer.
- This apparatus can be arranged within the enzymatic synthesis apparatus and connected to the fluid inlet 36 and to the fluid outlet 38 by conduits.
- the device can also have a function of purifying the fluid, in particular by removing allergens and pollutants.
- the circulation of the fluid from the fluid inlet 36 to the fluid outlet 38 can be part of a circulation loop or, to avoid contamination between two enzymatic synthesis cycles, be one-way.
- Such circulation of the fluid can also be implemented via a pump, for example a pump fluidly connected to the cleaning station mentioned above.
- fluid inlet 36 and the fluid outlet 38 can be crossed by other types of fluid, and for example a washing fluid or a deprotection fluid as they may have been mentioned previously.
- the reservoir 35 could for example be provided within the support platform 18 or arranged within the enzymatic synthesis apparatus and it would be fluidly connected to the fluid inlet 36 and to the fluid outlet 38 of the cover 22. It is understood here that the fluid circulating from this fluid inlet 36 to this fluid outlet 38 would be the saturated saline solution, the fluid inlet and outlet 36, 38 of the cover 22 then constituting means of communicating the reservoir 35 to the substrate plate 16.
- the reservoir 35 of saturated saline solution could be provided in the support platform 18 and include other means of communication with the substrate plate 16, which would then no longer be carried by the lid.
- Such means of communication could for example take the form of pins which would be lowered when the cover 22 is placed on the support platform 18, these pins otherwise constituting a barrier between the reservoir 35 provided in this support platform 18 and the substrate plate 16 which it carries in its reception zone 20.
- the cover 22 can be equipped with a humidity sensor and/or a temperature sensor in order to control the operation of the humidification means.
- the cover 22 may also include a heating element, not shown here, which helps to prevent the formation of condensation within the cover 22, which could hinder imaging operations.
- the cover 22 is equipped with reversible attachment means 40 to a frame 42 of a covering station of the enzymatic synthesis apparatus, this frame 42 being visible in Figure 8.
- These reversible attachment means 40 allow the cover 22 to be alternately placed on the support platform 18 from the frame 42 and lifted from this support platform 18 to attach to the frame 42.
- the cover 22 is more particularly intended to cover the substrate plate 16; we understand that it will rest for this purpose on the reception zone 20.
- These reversible attachment means 40 are configured to cooperate with reversible attachment members which are carried by the frame and which will be detailed later in the description .
- the reversible attachment means 40 comprise magnets including at least one electromagnet.
- the activation and deactivation of the reversible attachment means are then done respectively by the electrical supply of the electromagnet and the power cut-off at the appropriate time.
- the at least one electromagnet is powered continuously so that the cover is retained on the frame 42 and the power supply is interrupted when the cover must be released to cover the substrate plate.
- the reversible attachment means 40 may also comprise at least one permanent magnet, a combination of the presence of at least one electromagnet and at least one permanent magnet making it possible to ensure that the cover 22 is maintained in position on the frame. 42 even in the event of a cut in the electrical supply necessary for the operation of the electromagnet. Where applicable, if sufficient permanent magnets are provided, this may make it possible to avoid a continuous supply of electromagnet(s) to retain the cover to the frame and this may thus make it possible to limit electrical consumption.
- the reversible hooking means 40 are carried by the upper wall 30 of the cover 22.
- the reversible hooking means 40 are arranged on a wall opposite the wall to from which the cavity 34 extends, namely the lower wall 32.
- the upper wall 30 here comprises four electromagnets as reversible attachment means 40, these electromagnets each being arranged at a corner of the upper wall 30, c that is to say on either side of the cavity 34.
- Such an arrangement of the reversible attachment means 40 makes it possible to ensure that the substrate plate 16 is correctly covered by the cover 22, this substrate plate 16 being surrounded by the reversible attachment means 40.
- the reversible attachment means 40 of the cover 22 to the frame 42 could take the form of at least one suction member, for example a suction cup.
- the reversible hooking means 40 are configured to cooperate with reversible hooking members 44 of the frame 42 of the recovery station. These reversible attachment members 44 are in particular, if the reversible attachment means are electromagnets and/or permanent magnets, magnets or metal inserts.
- the reversible attachment means 40 can be activated or deactivated, their deactivation leading to the detachment of the cover 22 from the frame 42 of the covering station, that is to say the separation of these two elements, as well as the deposit of the cover 22 on the reception zone 20 of the support platform 18 carrying the substrate plate 16, while their activation causes a lifting of the cover 22 of the support platform 18 and its reversible attachment to the frame 42.
- the reversible hooking means 40 allow, when they are activated and deactivated, and the support platform 18 is facing the frame 42, respectively attraction and repulsion movements of the cover 22 relative to the frame 42.
- the attraction allows the cover 22 to be reversibly attached to this frame 42, while the repulsion allows its detachment and therefore its deposit on the reception zone 20 of the support platform 18.
- Such movements of attraction and repulsion are, due to the arrangement of the reversible attachment means 40, substantially perpendicular to a plane in which the support platform 18 mainly extends.
- the reversible attachment means 40 are activated as a function of a position of the support platform 18 and of the substrate plate that it carries, and more precisely of the position of the substrate plate relative to the cover retained on the built.
- the reversible attachment means 40 can be activated remotely, in particular by an appropriate computer program, as soon as the positioning of the support platform 18 in an appropriate position is detected within the printing device 1.
- the cover 22 and/or the support platform 18 may have keying means. These keying means are more precisely carried, for the cover 22, by the lower wall 32.
- the cover 22 may comprise, as illustrated in Figure 4 or Figure 8 in particular, reversible fixing instruments 220, which are configured to cooperate with reversible fixing systems 180 arranged on the support platform 18 for facilitate the unhooking step during which the cover is placed on the support platform, by attracting the cover towards the support platform, or on the contrary to facilitate a step of returning to the original position, during which the lid is brought back against the cover station frame, pushing the cover away from the support platform.
- reversible fixing instruments 220 which are configured to cooperate with reversible fixing systems 180 arranged on the support platform 18 for facilitate the unhooking step during which the cover is placed on the support platform, by attracting the cover towards the support platform, or on the contrary to facilitate a step of returning to the original position, during which the lid is brought back against the cover station frame, pushing the cover away from the support platform.
- the enzymatic synthesis process 46 comprises several successive steps which form a cycle allowing the implementation of the synthesis method described previously.
- the enzymatic synthesis process 46 begins with a first positioning step El, during which the support platform 18 is positioned within the printing station so that the reception zone 20 carrying the substrate plate 16 is in position. view of the print head 2, that is to say in its first position.
- the substrate plate 16 is then positioned under the projection nozzles 4 carried by this print head.
- the enzymatic synthesis process 46 then continues with the printing step, mentioned previously in relation to the enzymatic synthesis method, which allows the deposition of ink 6 containing enzymatic synthesis reagents in the reaction wells of the plate substrate 16 provided for this purpose.
- a second positioning step E2 during which the support platform 18 is moved to a second position within the covering station so that the substrate plate is positioned under the cover 22 which is hooked to the frame 42 thanks to the reversible hooking means 40, which are for this purpose in a first state, for example activated, and to the reversible hooking members 44.
- the cover 22 can then be placed on the reception zone 20 of the platform support 18 overlapping the substrate plate 16, which constitutes a step E3.
- Such an unhooking step E3 notably involves the reversible hooking means 40 and the reversible hooking members 44, with at least the reversible hooking means which change state, and are here for example deactivated.
- the lower wall of the cover 22 is in contact with the reception zone 20 and the substrate plate 16 is housed in the cavity 34 of the cover 22.
- the unhooking step also implements the systems reversible fixing 180 and/or the reversible fixing instruments 220, to attract the cover 22 towards the support platform 18. This has the advantage on the one hand of ensuring reliability of the positioning of the cover 22 on the support platform 18 and speed of the unhooking operation, by making the fixing systems and instruments cooperate, and on the other hand to freeze the position of the cover 22 once on the support platform.
- the enzymatic synthesis process 46 continues with a humidification step E4 via the humidification means, which makes it possible to avoid drying out of the drops of ink containing the synthesis reagents which were deposited on the substrate plate 16 during the printing step.
- the humidification step E4 being able to take place throughout the duration of the incubation step of this method. of synthesis.
- the humidification step E4 involves the humidification means, that is to say according to the embodiments the reservoir 35 and/or the fluid inlet 36 and the fluid outlet 38.
- humidification is ensured by diffusion of the saturated saline solution within the cavity 34, and therefore around the substrate plate 16.
- the circulation of the wet fluid between this fluid inlet 36 and this fluid outlet 38 can be ensured by actuation of the pump connected to the cleaning station.
- the support platform 20 can be moved to the imaging station comprising the camera 24 for an imaging step E5.
- an imaging step E5 is facilitated by the transparency of at least one wall of the cover 22. Operations to verify the elongation can then be carried out.
- a such hooking step E6 corresponds to a change of state of the reversible hooking means 40 and/or the reversible hooking members 44, and it may also include a change of state, namely an activation or deactivation , reversible fixation systems 180 and reversible fixation instruments 220.
- the support platform 18 can be directed towards other operating stations of the enzymatic synthesis apparatus, for example the cleaning station for a rinsing step E7 of the plate. substrate 16.
- Another cycle of the enzymatic synthesis process 46 can then begin by reproducing the first positioning step El.
- the present invention thus proposes a cover configured to cover a substrate on which drops of synthesis reagents have been deposited, thus making it possible to control a degree of humidity necessary for the progress of the synthesis, and means allowing simplified and rapid fixing of this cover.
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Abstract
Description
DESCRIPTION DESCRIPTION
Titre : Couvercle pour plaque de substrat d’un appareil de synthèse enzymatique Title : Lid for substrate plate of an enzyme synthesis apparatus
La présente invention concerne le domaine des appareils de synthèse enzymatique de biomolécules, et plus particulièrement les appareils de synthèse d'oligonucléotides tels que l'ARN et l'ADN par impression à jet d’encre. The present invention relates to the field of devices for the enzymatic synthesis of biomolecules, and more particularly devices for the synthesis of oligonucleotides such as RNA and DNA by inkjet printing.
Les polynucléotides d'ADN et/ou d'ARN sont des polymères linéaires de monomères nucléotidiques ou d'analogues de ceux-ci qui sont capables de se lier spécifiquement à d'autres oligonucléotides par le biais d'un modèle régulier d'interactions entre monomères. La taille des polynucléotides varie généralement de quelques monomères, par exemple de 5 à 40 monomères lorsqu'ils sont habituellement appelés "oligonucléotides", à plusieurs milliers de monomères. Habituellement, les polynucléotides comprennent les quatre nucléotides naturels, par exemple la désoxyadénosine, la désoxycytidine, la désoxyguanosine, la désoxythymidine pour l'ADN ou leurs équivalents ribose pour l'ARN, liés par des liaisons phosphodiesters ; cependant, ils peuvent également comprendre des analogues de nucléotides non naturels, par exemple des bases modifiées, des sucres ou des liaisons internucléosidiques. DNA and/or RNA polynucleotides are linear polymers of nucleotide monomers or analogues thereof that are capable of specifically binding to other oligonucleotides through a regular pattern of interactions between monomers. The size of polynucleotides generally varies from a few monomers, for example from 5 to 40 monomers when they are usually called "oligonucleotides", to several thousand monomers. Usually, polynucleotides include the four natural nucleotides, for example deoxyadenosine, deoxycytidine, deoxyguanosine, deoxythymidine for DNA or their ribose equivalents for RNA, linked by phosphodiester bonds; however, they may also include non-natural nucleotide analogues, for example modified bases, sugars or internucleoside linkages.
Lorsqu’un dispositif d'impression par jet d'encre est utilisé dans un appareil de synthèse enzymatique d'ADN et/ou d'ARN, des quantités définies d'une solution enzymatique peuvent être délivrées à des emplacements précis sur un substrat comprenant des fragments initiateurs d’ADN et/ ou d’ARN. La solution enzymatique, qui contient des réactifs de synthèse parmi lesquels des enzymes, peut par exemple être déposée sur le substrat sous la forme de gouttes d’encre.When an inkjet printing device is used in an apparatus for enzymatic synthesis of DNA and/or RNA, defined quantities of an enzyme solution can be delivered to precise locations on a substrate comprising DNA and/or RNA initiator fragments. The enzymatic solution, which contains synthesis reagents including enzymes, can for example be deposited on the substrate in the form of ink drops.
Afin d’optimiser le déroulement de la synthèse enzymatique qui résulte en l’élongation des fragments initiateurs, une étape d’incubation en milieu humide du substrat peut être nécessaire. Cette étape d’incubation en milieu humide a notamment pour objectif de limiter l’évaporation des gouttes d’encre et de s’assurer que l’enzyme dispose d’un temps nécessaire pour catalyser l’élongation. Afin de contrôler l’humidité de l’environnement dans lequel se trouve le substrat, il est connu de l’art antérieur d’enfermer l’appareil de synthèse enzymatique dans un boîtier auquel on adjoint un organe de contrôle d’humidité. Une telle solution implique cependant de parvenir à effectuer un raccordement de l’appareil de synthèse enzymatique à des équipements extérieurs au boîtier. Il est en outre nécessaire d’isoler des composants qui risqueraient d’être altérés négativement en raison de l’humidité, par exemple des cartes de circuit imprimé sur lesquelles l’humidité pourrait entraîner des courts-circuits ou de la corrosion. Également, une telle solution complique l’accès à l’appareil de synthèse enzymatique, par exemple pour des opérations de maintenance, puisque l’accès doit être limité pour contrôler facilement le taux d’humidité. Enfin, pour un boîtier entourant l’intégralité de l’appareil de synthèse enzymatique, des volumes de fluide humide nécessaires à l’incubation sont généralement importants. In order to optimize the progress of the enzymatic synthesis which results in the elongation of the initiator fragments, an incubation step in a humid environment of the substrate may be necessary. This incubation step in a humid environment aims in particular to limit the evaporation of the ink drops and to ensure that the enzyme has the necessary time to catalyze elongation. In order to control the humidity of the environment in which the substrate is located, it is known from the prior art to enclose the enzymatic synthesis apparatus in a housing to which a humidity control member is added. Such a solution, however, involves achieving a connection of the enzymatic synthesis apparatus to equipment external to the housing. It is also necessary to insulate components that could be adversely affected by humidity, for example printed circuit boards where humidity could cause short circuits or corrosion. Also, such a solution complicates access to the enzymatic synthesis apparatus, for example for maintenance operations, since access must be limited to easily control the humidity level. Finally, for a housing surrounding the entire enzymatic synthesis apparatus, volumes of wet fluid necessary for incubation are generally large.
Par ailleurs, le procédé de synthèse enzymatique mettant en œuvre un dispositif d’impression par jet d’encre implique d’autres étapes que le dépôt d’encre et l’incubation. Des étapes de déprotection des fragments d’ADN ou d’ARN ou de lavage sont par exemple nécessaire à chaque cycle d’élongation, afin de s’assurer que les polynucléotides sont formés selon la séquence souhaitée, chacune de ces étapes impliquant la projection d’un liquide approprié ou l’immersion du substrat dans ce liquide. Il est ainsi connu de déplacer cycliquement le substrat et les fragments qui s’y trouvent d’une station de déprotection à une station dans laquelle est réalisée l’élongation puis vers une station de lavage. Chaque déplacement est pénalisant pour la rapidité de l’opération de synthèse dans son ensemble, et pour son coût de revient. Furthermore, the enzymatic synthesis process using an inkjet printing device involves steps other than ink deposition and incubation. Steps of deprotection of DNA or RNA fragments or washing are for example necessary at each elongation cycle, in order to ensure that the polynucleotides are formed according to the desired sequence, each of these steps involving the projection of a suitable liquid or the immersion of the substrate in this liquid. It is thus known to cyclically move the substrate and the fragments found there from a deprotection station to a station in which elongation is carried out then to a washing station. Each move is detrimental to the speed of the synthesis operation as a whole, and to its cost price.
La présente invention s’inscrit dans ce contexte et a ainsi pour principal objet un appareil de synthèse enzymatique configuré pour la synthèse de biomolécules, comprenant une plateforme de support comportant une zone de réception configurée pour recevoir une plaque de substrat sur laquelle sont disposées des gouttes d’encre contenant des réactifs de synthèse, l’appareil de synthèse enzymatique comprenant un couvercle destiné à recouvrir la plaque de substrat, le couvercle étant équipé de moyens d’accroche réversible à un bâti d’une station de recouvrement de l’appareil de synthèse enzymatique. L’appareil de synthèse enzymatique selon l’invention permet la synthèse enzymatique de polynucléotides, par exemple des fragments d’intérêt ou encore des biomolécules complètes. L’appareil enzymatique comprend plusieurs stations dédiées à différentes étapes d’une telle synthèse enzymatique, dont une station d’impression comprenant un dispositif d’impression et une station de recouvrement. Une plaque de substrat est mobile entre les différentes stations, c'est-à-dire qu’elle peut être mue d’une station à l’autre, par exemple par pilotage par ordinateur. Cette plaque de substrat peut être déplacée par l’intermédiaire d’une plateforme de support, qui comprend à cet effet une zone de réception où la plaque de substrat peut être déposée. The present invention fits into this context and thus has as its main object an enzymatic synthesis apparatus configured for the synthesis of biomolecules, comprising a support platform comprising a reception zone configured to receive a substrate plate on which drops are arranged ink containing synthesis reagents, the enzymatic synthesis apparatus comprising a cover intended to cover the substrate plate, the cover being equipped with means for reversibly attaching to a frame of a covering station of the synthesis reagent enzymatic synthesis. The enzymatic synthesis apparatus according to the invention allows the enzymatic synthesis of polynucleotides, for example fragments of interest or even complete biomolecules. The enzymatic apparatus includes several stations dedicated to different stages of such enzymatic synthesis, including a printing station comprising a printing device and a covering station. A substrate plate is movable between the different stations, that is to say it can be moved from one station to another, for example by computer control. This substrate plate can be moved via a support platform, which for this purpose comprises a reception area where the substrate plate can be deposited.
Cette plaque de substrat correspond à l’endroit où se produit la synthèse enzymatique. Elle est en effet porteuse de fragments initiateurs destinés à subir une étape d’élongation, qui est réalisée grâce aux réactifs de synthèse contenus dans les gouttes d’encre. Ces réactifs de synthèse comprennent notamment des enzymes, qui pour catalyser de façon optimale l’étape d’élongation requièrent un environnement humide. Cet environnement humide peut être mis en œuvre par l’intermédiaire d’un couvercle qui est placé, sur la plateforme de support, en recouvrement de la plaque de substrat. Un tel recouvrement permet la réalisation d’une étape d’incubation. This substrate plate is where enzyme synthesis occurs. It is in fact carrying initiator fragments intended to undergo an elongation step, which is carried out thanks to the synthesis reagents contained in the ink drops. These synthesis reagents include enzymes, which require a humid environment to optimally catalyze the elongation step. This humid environment can be implemented via a cover which is placed, on the support platform, covering the substrate plate. Such an overlap allows an incubation stage to be carried out.
Ce couvercle comprend des moyens d’accroche réversible à un bâti de la station de recouvrement, ce qui permet le détachement du couvercle du bâti pour le déposer sur la plateforme de support en recouvrement de la plaque de substrat et son accroche au bâti lorsque l’étape d’incubation est terminée. This cover comprises reversible attachment means to a frame of the covering station, which allows the cover to be detached from the frame to place it on the support platform covering the substrate plate and its attachment to the frame when the incubation stage is completed.
Il est ainsi possible d’embarquer différents moyens appropriés pour permettre l’une ou l’autre des étapes d’un procédé de synthèse enzymatique, comme des moyens permettant de réguler des conditions ambiantes favorables à l’élongation des fragments, ou des moyens permettant de guider un fluide approprié. It is thus possible to embed different appropriate means to allow one or other of the stages of an enzymatic synthesis process, such as means making it possible to regulate ambient conditions favorable to the elongation of the fragments, or means allowing to guide an appropriate fluid.
Selon une caractéristique de l’invention, le couvercle est configuré pour former avec la plateforme de support, lorsqu’il est disposé contre cette plateforme de support, un conduit de circulation de fluide en travers duquel est disposé la plaque de substrat. De la sorte, il est possible de laisser le couvercle en position une fois celui-ci déposé sur la plateforme de support et de réaliser, sans bouger la plateforme de support pour changer de station au sein du dispositif de synthèse enzymatique, une opération de déprotection, en faisant passer dans le conduit de circulation ainsi formé une solution de déprotection contenant des réactifs spécifiques tels que des agents réducteurs ou encore des enzymes de clivage enzymatique. Il est également possible de laisser le couvercle en position une fois celui-ci déposé sur la plateforme de support et de réaliser, sans bouger la plateforme de support pour changer de station au sein du dispositif de synthèse enzymatique, une opération de nettoyage, en faisant passer dans le conduit de circulation ainsi formé de l’eau ou une solution de nettoyage. Il est également possible de laisser le couvercle en position une fois celui-ci déposé sur la plateforme de support et de réaliser, sans bouger la plateforme de support pour changer de station au sein du dispositif de synthèse enzymatique, une opération de séchage, en faisant passer dans le conduit de circulation ainsi formé un flux d’air chaud. According to one characteristic of the invention, the cover is configured to form with the support platform, when it is placed against this support platform, a fluid circulation conduit across which the substrate plate is placed. In this way, it is possible to leave the cover in position once it has been placed on the support platform and to carry out, without moving the support platform to change station within the enzymatic synthesis device, a deprotection operation. , by passing through the circulation conduit thus formed a deprotection solution containing specific reagents such as reducing agents or even enzymatic cleavage enzymes. It is also possible to leave the cover in position once it has been placed on the support platform and to carry out, without moving the support platform to change stations within the enzymatic synthesis device, a cleaning operation, by carrying out pass water or a cleaning solution into the circulation conduit thus formed. It is also possible to leave the cover in position once it has been placed on the support platform and to carry out, without moving the support platform to change station within the enzymatic synthesis device, a drying operation, by doing pass through the circulation duct thus forming a flow of hot air.
Selon une caractéristique, le couvercle est équipé d’un moyen d’humidification de la plaque de substrat. La présente invention vise ainsi à palier certains des inconvénients précédemment évoqués, en proposant une régulation ciblée de l’humidité pour optimiser la régulation de l’humidité de la plaque de substrat, notamment lors d’une étape d’incubation. According to one characteristic, the cover is equipped with a means of humidifying the substrate plate. The present invention thus aims to overcome some of the disadvantages previously mentioned, by proposing targeted regulation of humidity to optimize the regulation of the humidity of the substrate plate, in particular during an incubation step.
L’humidité est obtenue par le biais du moyen d’humidification intégré ou relié au couvercle. Ainsi, on réalise une humidité optimale pour l’étape d’incubation par l’intermédiaire d’un moyen de couverture qui présente des dimensions réduites par rapport aux solutions de l’art antérieur, ce moyen de couverture étant adapté aux dimensions du substrat, et qui permet ainsi de limiter les quantités de fluide humide requises pour assurer l’humidité souhaitée. Humidity is obtained through the humidification means integrated or connected to the cover. Thus, optimal humidity is achieved for the incubation step via a covering means which has reduced dimensions compared to the solutions of the prior art, this covering means being adapted to the dimensions of the substrate, and which thus makes it possible to limit the quantities of wet fluid required to ensure the desired humidity.
Selon une autre caractéristique de l’invention, le moyen d’humidification comprend une entrée de fluide et une sortie de fluide, ladite entrée et ladite sortie étant ménagées dans le couvercle. According to another characteristic of the invention, the humidification means comprises a fluid inlet and a fluid outlet, said inlet and said outlet being provided in the cover.
Le moyen d’humidification permet ainsi d’acheminer du fluide participant à l’humidification par l’intermédiaire de l’entrée de fluide, et de l’en évacuer par le biais de la sortie de fluide. Ces entrée et sortie de fluide sont ménagées dans le couvercle ; ce sont par exemple des orifices disposés sur des parois de ce couvercle. De tels orifices peuvent avantageusement être disposés à des extrémités opposées du couvercle, permettant ainsi la traversée d’une extrémité à l’autre du couvercle par le fluide humide. The humidification means thus makes it possible to convey fluid participating in humidification via the fluid inlet, and to evacuate it via the fluid outlet. These fluid inlets and outlets are provided in the lid; these are for example orifices arranged on the walls of this cover. Such orifices can advantageously be arranged at opposite ends of the cover, thus allowing the wet fluid to pass from one end of the cover to the other.
Selon une autre caractéristique de l’invention, le moyen d’humidification comprend un réservoir configuré pour permettre un passage de l’humidité du réservoir vers la plaque de substrat. According to another characteristic of the invention, the humidification means comprises a reservoir configured to allow humidity to pass from the reservoir to the substrate plate.
Un tel réservoir est configuré pour recevoir une solution saline saturée. Le réservoir peut notamment correspondre à un logement pour une cartouche de la solution saline saturée. Alternativement, ce réservoir peut être un compartiment pouvant recevoir la solution par le biais d’une seringue. Such a reservoir is configured to receive a saturated saline solution. The reservoir may in particular correspond to a housing for a cartridge of the saturated saline solution. Alternatively, this reservoir can be a compartment that can receive the solution via a syringe.
Selon une autre caractéristique de l’invention, le réservoir est ménagé dans le couvercle. According to another characteristic of the invention, the reservoir is provided in the cover.
Ainsi, le réservoir correspond à un dégagement de matière au sein du couvercle, ce qui permet le stockage de fluide dans ce couvercle. Il n’est ici pas nécessaire que le réservoir soit relié à l’entrée et à la sortie de fluide. Une telle disposition permet de limiter une quantité de fluide nécessaire à l’humidification, en comparaison à une quantité de fluide nécessaire pour les modes de réalisation où le fluide traverse le couvercle de l’entrée à la sortie de fluide sans y être stocké. Le réservoir peut notamment être délimité par un muret qui retient le fluide au sein du réservoir, à distance de la plaque de substrat, mais qui présente une ouverture permettant le passage de l’humidité généré par le fluide.Thus, the reservoir corresponds to a release of material within the cover, which allows the storage of fluid in this cover. It is not necessary here that the tank be connected to the fluid inlet and outlet. Such an arrangement makes it possible to limit a quantity of fluid necessary for humidification, in comparison to a quantity of fluid necessary for the embodiments where the fluid passes through the cover from the inlet to the fluid outlet without being stored there. The reservoir can in particular be delimited by a low wall which retains the fluid within the reservoir, at a distance from the substrate plate, but which has an opening allowing the passage of humidity generated by the fluid.
Selon une caractéristique alternative de l’invention, le réservoir est ménagé dans la plateforme de support et est relié à l’entrée et à la sortie ménagées dans le couvercle. According to an alternative characteristic of the invention, the tank is provided in the support platform and is connected to the inlet and outlet provided in the cover.
On comprend ici que selon ce mode de réalisation, le réservoir n’est plus porté par le couvercle mais par la plateforme de support. We understand here that according to this embodiment, the tank is no longer carried by the cover but by the support platform.
Selon une autre caractéristique de l’invention, le réservoir est ménagé dans la plateforme de support et comprend des moyens de mise en communication avec la plaque de substrat. Dans un tel mode de réalisation, le positionnement du couvercle sur la plateforme de support peut par exemple entraîner l’abaissement de pions qui constituent autrement un barrage entre le réservoir et la plaque de substrat.According to another characteristic of the invention, the reservoir is provided in the support platform and comprises means for communicating with the substrate plate. In such an embodiment, the positioning of the cover on the support platform can for example result in the lowering of pins which otherwise constitute a barrier between the reservoir and the substrate plate.
Selon une caractéristique de l’invention, le couvercle comporte des moyens de séchage, par exemple par des conduits d’alimentation pour le soufflage d’air chaud. According to one characteristic of the invention, the cover comprises drying means, for example by supply ducts for blowing hot air.
Selon une caractéristique de l’invention, le couvercle comporte des moyens d’alimentation d’un liquide de nettoyage et/ou des moyens d’alimentation d’un fluide apte à réaliser la déprotection de l’extrémité d’un fragment d’ADN ou d’ARN. According to one characteristic of the invention, the cover comprises means for supplying a cleaning liquid and/or means for supplying a fluid capable of carrying out the deprotection of the end of a DNA fragment or RNA.
Selon une autre caractéristique de l’invention, le couvercle est équipé d’un capteur d’humidité et/ ou d’un capteur de température. According to another characteristic of the invention, the cover is equipped with a humidity sensor and/or a temperature sensor.
De tels capteurs, et notamment le capteur d’humidité, permettent de mettre en œuvre des opérations de régulation de l’humidité en fonction des valeurs relevées par ce capteur, afin de s’assurer qu’un niveau d’humidité est propice à l’élongation. Such sensors, and in particular the humidity sensor, make it possible to implement humidity regulation operations according to the values recorded by this sensor, in order to ensure that a humidity level is conducive to the 'elongation.
Selon une autre caractéristique de l’invention, les moyens d’accroche réversible sont configurés pour coopérer avec des organes d’accroche réversible du bâti de la station de recouvrement. According to another characteristic of the invention, the reversible hooking means are configured to cooperate with reversible hooking members of the frame of the recovery station.
En d’autres termes, le bâti est porteur d’organes d’accroche réversible qui sont le pendant des moyens d’accroche réversible portés par le couvercle. Ces organes d’accroche réversible sont par exemple des aimants ou des inserts en métaux ferreux. In other words, the frame carries reversible hooking members which are the counterpart of the reversible hooking means carried by the cover. These reversible attachment members are, for example, magnets or ferrous metal inserts.
Selon une autre caractéristique de l’invention, les moyens d’accroche réversible et/ ou les organes d’accroche réversible comprennent au moins un électroaimant. According to another characteristic of the invention, the reversible hooking means and/or the reversible hooking members comprise at least one electromagnet.
Un tel électroaimant permet l’accroche réversible du couvercle au bâti de la station de recouvrement, ou bien au contraire tend à repousser le couvercle à distance du bâti, lorsqu’il est traversé par un courant électrique ; on comprend que l’accroche et le décrochage se font par attraction/ répulsion magnétique. De tels moyens d’accroche réversible peuvent être mis en œuvre de façon rapide dès que le couvercle est en regard du bâti. Such an electromagnet allows the cover to be reversibly attached to the frame of the recovery station, or on the contrary tends to push the cover away from the frame, when an electric current passes through it; we understand that hooking and unhooking are done by magnetic attraction/repulsion. Of such reversible attachment means can be implemented quickly as soon as the cover is facing the frame.
Selon une autre caractéristique de l’invention, les moyens d’accroche réversible et/ ou les organes d’accroche réversible comprennent au moins un aimant permanent. According to another characteristic of the invention, the reversible hooking means and/or the reversible hooking members comprise at least one permanent magnet.
En sus de l’électroaimant, les moyens d’accroche réversible et/ou les organes d’accroche réversible peuvent comprendre un aimant permanent. L’association de ces deux types d’aimants constitue une sécurité en cas de coupures de courant électrique qui désactiveraient l’électroaimant, l’aimant permanent assurant alors l’accroche seul. Une telle sécurité permet d’éviter que le couvercle ne tombe sur la plateforme de support de façon inopportune, notamment en dehors de l’étape d’incubation, ou au contraire que le couvercle reste à demeure sur la plateforme de support et empêche la réalisation d’une étape ultérieure d’impression de la plaque de substrat. In addition to the electromagnet, the reversible attachment means and/or the reversible attachment members may include a permanent magnet. The combination of these two types of magnets provides security in the event of electrical power outages which would deactivate the electromagnet, with the permanent magnet then ensuring the attachment alone. Such security makes it possible to prevent the lid from falling on the support platform in an untimely manner, particularly outside the incubation stage, or on the contrary that the lid remains permanently on the support platform and prevents the realization a subsequent step of printing the substrate plate.
Selon une autre caractéristique de l’invention, les organes d’accroche réversible comprennent au moins un aimant. According to another characteristic of the invention, the reversible hooking members comprise at least one magnet.
On comprend que cet aimant, qui est donc disposé sur le bâti de la station de recouvrement, est destiné à coopérer avec l’aimant permanent ou l’électroaimant constituant les moyens d’accroche réversible. Tel qu’évoqué, les organes d’accroche réversible peuvent également comporter un électroaimant, qui est configuré pour participer au décrochage du couvercle et pousser le couvercle à distance du bâti, en direction de la plateforme de support de la plaque de substrat. We understand that this magnet, which is therefore arranged on the frame of the recovery station, is intended to cooperate with the permanent magnet or the electromagnet constituting the reversible attachment means. As mentioned, the reversible hooking members can also include an electromagnet, which is configured to participate in unhooking the cover and push the cover away from the frame, towards the support platform of the substrate plate.
Selon une caractéristique alternative, les moyens d’accroche réversible comprennent au moins un organe d’aspiration. According to an alternative characteristic, the reversible attachment means comprise at least one suction member.
Un tel organe d’aspiration est une alternative aux électroaimants précédemment évoqués. Cet organe d’aspiration est par exemple une ventouse qui permet l’accroche en créant un vide. Such a suction member is an alternative to the electromagnets previously mentioned. This suction member is for example a suction cup which allows attachment by creating a vacuum.
Selon une caractéristique, la plateforme de support comprend des systèmes de fixation réversible, les systèmes de fixation réversible coopérant avec des instruments de fixation réversible disposés sur une paroi inférieure du couvercle en regard de la plateforme de support. According to one characteristic, the support platform comprises reversible fixing systems, the reversible fixing systems cooperating with reversible fixing instruments arranged on a lower wall of the cover facing the support platform.
Il s’agit ici d’un mode de réalisation particulier du dispositif d’impression selon l’invention, dans lequel celui-ci comporte, en sus des moyens de fixation réversible et des organes de fixation réversible complémentaires déjà évoqués et qui permettent l’accrochage et le décrochage du couvercle sur le bâti de la station de recouvrement, des éléments de fixation réversible qui assurent la position du couvercle sur la plateforme de support une fois le couvercle décroché du bâti. Les solutions mises en œuvre pour la coopération des moyens de fixation réversible avec les organes de fixation réversible, et par exemple les aimants et/ ou les organes de mise sous vide, peuvent être appliquées de la même manière aux systèmes et instruments de fixation réversible. This is a particular embodiment of the printing device according to the invention, in which it comprises, in addition to reversible fixing means and complementary reversible fixing members already mentioned and which allow the hooking and unhooking the cover on the frame of the covering station, reversible fixing elements which ensure the position of the cover on the support platform once the cover is removed from the frame. The solutions implemented for the cooperation of the reversible fixing means with the reversible fixing members, and for example magnets and/or vacuum members, can be applied in the same way to reversible fixing systems and instruments.
Il résulte de ces différents configurations que plusieurs modes de réalisation peuvent être mis en œuvre pour réaliser l’accrochage et le décrochage du couvercle par rapport au bâti et son positionnement sur la plateforme de support. As a result of these different configurations, several embodiments can be implemented to attach and unhook the cover from the frame and position it on the support platform.
Dans un premier cas, le couvercle est fixé sur le bâti de la station de recouvrement par l’action d’un ou plusieurs électroaimants, configurés pour retenir de manière permanente le couvercle contre le bâti jusqu’à ce que du courant soit injecté dans les électroaimants, ce qui a pour effet de repousser le couvercle du bâti. Ce courant est injecté lorsque la plateforme de support passe sous la station de recouvrement, de sorte que le couvercle se dépose par gravité sur la plateforme de support. In a first case, the cover is fixed on the frame of the recovery station by the action of one or more electromagnets, configured to permanently retain the cover against the frame until current is injected into the electromagnets, which has the effect of pushing back the cover of the frame. This current is injected as the support platform passes under the cover station, so that the cover settles by gravity on the support platform.
Dans un deuxième cas, le couvercle est fixé sur le bâti de la station de recouvrement par l’action des moyens d’accroche réversible et des organes d’accroche correspondant, tels que des aimants permanents ou des moyens de mise à vide. Lorsque la plateforme de support passe sous la station de recouvrement, un ou plusieurs électroaimants présents sur la plateforme de support et/ ou un plusieurs électroaimants présents sur une face inférieure du couvercle en regard de la plateforme de support sont activés pour attirer le couvercle vers la plateforme de support et permettre le positionnement de ce couvercle en recouvrement de la plaque de substrat. Lorsque le ou les électroaimants ne sont plus alimentés, le couvercle reprend automatiquement sa place sur le bâti de la station de recouvrement, à distance de la plaque de substrat, le cas échéant en étant rappelé en position par des moyens formant ressort. In a second case, the cover is fixed on the frame of the covering station by the action of the reversible hooking means and the corresponding hooking members, such as permanent magnets or vacuum means. When the support platform passes under the cover station, one or more electromagnets present on the support platform and/or one more electromagnets present on an underside of the cover facing the support platform are activated to attract the cover towards the cover. support platform and allow the positioning of this cover covering the substrate plate. When the electromagnets are no longer powered, the cover automatically returns to its place on the frame of the covering station, at a distance from the substrate plate, if necessary by being returned to position by means forming a spring.
Il est notable que dans ces différents cas, les éléments d’accroche et de fixation réversibles sont configurés pour que, en cas de défaut d’alimentation électrique, le couvercle reste accroché, ou reprenne une position accrochée, au bâti de la station de recouvrement, à distance de la plaque de substrat, pour que celle-ci puisse continuer le cycle de synthèse enzymatique et être déplacée, sans que le couvercle soit présent, vers d’autres stations. It is notable that in these different cases, the reversible hooking and fixing elements are configured so that, in the event of a power supply failure, the cover remains hooked, or returns to a hooked position, to the frame of the covering station , at a distance from the substrate plate, so that it can continue the enzymatic synthesis cycle and be moved, without the cover being present, to other stations.
Selon une caractéristique de l’invention, le couvercle comprend une cavité dimensionnée pour loger la plaque de substrat. According to one characteristic of the invention, the cover comprises a cavity sized to accommodate the substrate plate.
Cette cavité forme un renfoncement au sein du couvercle de manière à y accueillir la plaque de substrat. Ainsi, il est possible de plaquer le couvercle contre la plateforme de support sans venir au contact de la plaque de substrat et donc sans risquer d’interférer sur la forme et la disposition des gouttes d’encre.This cavity forms a recess within the cover so as to accommodate the substrate plate. Thus, it is possible to press the cover against the support platform without coming into contact with the substrate plate and therefore without risking interfering with the shape and arrangement of the ink drops.
Selon une autre caractéristique, la cavité s’étend à partir d’une paroi du couvercle opposée à une paroi dudit couvercle portant les moyens d’accroche réversible. According to another characteristic, the cavity extends from a wall of the cover opposite a wall of said cover carrying the reversible attachment means.
Selon une caractéristique, le moyen d’humidification est apte à coopérer avec la cavité. According to one characteristic, the humidification means is able to cooperate with the cavity.
On entend ici par « apte à coopérer avec la cavité » que le moyen d’humidification participe à l’humidification de la cavité. A titre d’exemples non limitatifs, le moyen d’humidification peut consister en une chambre formée au sein du couvercle, en périphérie de la cavité, avec un muret participant à délimiter à la fois la cavité et la chambre, la chambre étant remplie d’un fluide approprié pour générer de l’humidité, le muret étant dimensionné pour former une ouverture de passage de l’humidité de la chambre jusqu’à la cavité tout en maintenant le fluide au sein de la chambre, à distance de la plaque de substrat logée dans la cavité. Selon une autre caractéristique, la plateforme de support et/ ou le couvercle sont équipés de moyens de détrompage. Here we mean by “capable of cooperating with the cavity” that the humidification means participates in the humidification of the cavity. By way of non-limiting examples, the humidification means may consist of a chamber formed within the cover, on the periphery of the cavity, with a low wall helping to delimit both the cavity and the chamber, the chamber being filled with 'a fluid suitable for generating humidity, the wall being dimensioned to form an opening for the passage of humidity from the chamber to the cavity while maintaining the fluid within the chamber, at a distance from the plate substrate housed in the cavity. According to another characteristic, the support platform and/or the cover are equipped with keying means.
Ces moyens de détrompage facilitent le positionnement du couvercle sur la plateforme de support, de sorte que la plaque de substrat portée par cette plateforme de support soit correctement reçue dans la cavité du couvercle. These keying means facilitate the positioning of the cover on the support platform, so that the substrate plate carried by this support platform is correctly received in the cavity of the cover.
Selon une caractéristique, le couvercle est réalisé au moins en partie en un matériau transparent. According to one characteristic, the cover is made at least partly of a transparent material.
Le recours à un matériau transparent permet d’effectuer des opérations d’imagerie de la plaque de substrat lorsqu’elle est recouverte par le couvercle.The use of a transparent material allows imaging operations to be performed on the substrate plate when it is covered by the cover.
Selon une autre caractéristique, le couvercle comprend un élément de chauffage. À l’instar du moyen d’humidification, l’élément de chauffage peut favoriser l’étape d’incubation, en chauffant la plaque de substrat à une température optimale pour l’incubation, et/ ou en chauffant le fluide destiné à produire l’humidité précédemment évoquée. Une telle température est par exemple comprise entre 3O°C et 7O°C. L’élément de chauffage peut permettre en outre d’éviter que de la condensation ne se forme sur le couvercle, ce qui pourrait entraver les opérations d’imagerie. According to another characteristic, the cover includes a heating element. Like the humidification means, the heating element can promote the incubation step, by heating the substrate plate to an optimal temperature for incubation, and/or by heating the fluid intended to produce the humidity previously mentioned. Such a temperature is for example between 30°C and 70°C. The heating element can also help prevent condensation from forming on the cover, which could interfere with imaging operations.
L’invention concerne en outre un procédé de synthèse enzymatique par un appareil de synthèse enzymatique tel qu’évoqué précédemment, comprenant une première étape de positionnement au cours de laquelle la plateforme de support porteuse de la plaque de substrat est positionnée, au sein d’une station d’impression, sous une tête d’impression de l’appareil de synthèse enzymatique de sorte que la zone de réception de la plaque de substrat soit positionnée en regard de ladite tête d’impression, une étape d’impression au cours de laquelle des gouttes d’encre contenant des réactifs de synthèse sont déposées sur la plaque de substrat, une deuxième étape de positionnement au cours de laquelle la plateforme de support est positionnée dans la station de recouvrement en regard du couvercle de sorte que la plaque de substrat soit positionnée sous le couvercle, et une étape de décrochage au cours de laquelle le couvercle est déposé sur la plateforme de support en recouvrement de la plaque de substrat par un changement d’état d'au moins les moyens d’accroche réversible. Le procédé de synthèse enzymatique selon l’invention fait donc intervenir une première étape de positionnement qui permet de placer la plateforme de support dans une première position au sein d’une station d’impression, c'est-à- dire de sorte que la plaque de substrat soit en regard de la tête d’impression. La plaque de substrat est alors idéalement positionnée pour l’étape d’impression qui se traduit par un dépôt de réactifs de synthèse sur cette plaque de substrat, par l’intermédiaire d’au moins une des buses de projection formant la tête d’impression et qui éjecte de l’encre contenant ces réactifs de synthèse. Une fois l’étape d’impression réalisée, la plateforme de support est de nouveau déplacée au cours de la deuxième étape de positionnement pour prendre une deuxième position, dans laquelle la zone de réception porteuse de la plaque de substrat est placée sous le bâti de la station de recouvrement, et plus particulièrement en regard du couvercle accroché à ce bâti. Survient alors une étape de décrochage, au cours de laquelle le couvercle est décroché du bâti et est déposé sur la plateforme de support en recouvrement de la plaque de substrat. Une telle étape de décrochage fait intervenir les moyens d’accroche réversible, qui sont activés ou désactivés pour permettre un tel décrochage. Le changement d’état des moyens d’accroche réversible, quand la plateforme de support arrive dans la station de recouvrement et que la plaque de substrat est sous le couvercle, permet de passer d’une configuration où le couvercle est retenu par le bâti de la station de recouvrement à une configuration où le couvercle est déposé en recouvrement de la plaque de substrat. The invention further relates to a method of enzymatic synthesis by an enzymatic synthesis apparatus as mentioned above, comprising a first positioning step during which the support platform carrying the substrate plate is positioned, within a printing station, under a print head of the enzymatic synthesis apparatus so that the receiving zone of the substrate plate is positioned facing said print head, a printing step during in which ink drops containing synthesis reagents are deposited on the substrate plate, a second positioning step during which the support platform is positioned in the covering station facing the cover so that the substrate plate is positioned under the cover, and an unhooking step during which the cover is deposited on the support platform covering the substrate plate by a change of state of at least the reversible attachment means. The enzymatic synthesis method according to the invention therefore involves a first positioning step which makes it possible to place the support platform in a first position within a printing station, that is to say so that the substrate plate is facing the print head. The substrate plate is then ideally positioned for the printing step which results in a deposition of synthesis reagents on this substrate plate, via at least one of the projection nozzles forming the print head and which ejects ink containing these synthesis reagents. Once the printing step has been completed, the support platform is moved again during the second positioning step to take a second position, in which the supporting receiving area of the substrate plate is placed under the support frame. the recovery station, and more particularly with regard to the cover attached to this frame. An unhooking step then occurs, during which the cover is unhooked from the frame and is placed on the support platform covering the substrate plate. Such an unhooking step involves the reversible hooking means, which are activated or deactivated to allow such unhooking. The change of state of the reversible attachment means, when the support platform arrives in the covering station and the substrate plate is under the cover, makes it possible to move from a configuration where the cover is retained by the frame of the covering station has a configuration where the cover is deposited on top of the substrate plate.
Selon la configuration des moyens d’accroche réversible, ceux-ci peuvent être actifs ou contraire inactifs lorsque le couvercle est retenu sur le bâti de la station de recouvrement. A titre d’exemple, les moyens d’accroche réversible peuvent changer d’état de sorte que le couvercle se dépose par effet de gravité sur la plateforme de support de la plaque de substrat ou bien de sorte que le couvercle soit attiré par la plateforme de support et/ou repoussé par le bâti. Sans que ce soit limitatif de l’invention, ces derniers effets d’attraction/répulsion peuvent notamment être du fait d’une champ magnétique approprié ou bien d’un effet de mise sous vide et de pression positive. Depending on the configuration of the reversible attachment means, they can be active or otherwise inactive when the cover is retained on the frame of the covering station. For example, the reversible attachment means can change state so that the cover is deposited by gravity on the support platform of the substrate plate or so that the cover is attracted by the platform support and/or pushed back by the frame. Without limiting the invention, these latter attraction/repulsion effects may in particular be due to an appropriate magnetic field or to a vacuum and positive pressure effect.
Dans chacun de ces cas, après incubation, les changements d’état des moyens d’accroche réversible sont opérés en sens inverse, afin que le couvercle se détache de la plateforme de support et puisse reprendre sa place d'origine, accroché contre le bâti de la station de recouvrement. In each of these cases, after incubation, the changes in state of the reversible attachment means are carried out in the opposite direction, so that the cover is detaches from the support platform and can return to its original place, hooked against the frame of the recovery station.
Selon une caractéristique, le procédé comprend une étape d’humidification survenant après l’étape de décrochage, dès lors que le couvercle est positionné en recouvrement de la plaque de substrat. According to one characteristic, the method comprises a humidification step occurring after the unhooking step, since the cover is positioned covering the substrate plate.
L’étape d’humidification survient lorsque le couvercle recouvre la plaque de substrat, c'est-à-dire lorsque celle-ci est logée dans la cavité du couvercle. Cette étape d’humidification fait intervenir le moyen d’humidification, grâce auquel la plaque de substrat est humidifiée afin d’éviter l’assèchement des gouttes d’encre contenant les réactifs de synthèse disposées sur la plaque de substrat. The humidification stage occurs when the cover covers the substrate plate, that is to say when the latter is housed in the cavity of the cover. This humidification step involves the humidification means, by means of which the substrate plate is humidified in order to prevent the drying of the ink drops containing the synthesis reagents placed on the substrate plate.
Selon une caractéristique de l’invention, le procédé comprend une étape d’accroche au cours de laquelle le couvercle est soulevé et accroché à l’appareil de synthèse enzymatique. According to one characteristic of the invention, the method comprises a hanging step during which the cover is lifted and hung on the enzymatic synthesis apparatus.
Une telle étape d’accroche, ou étape de fixation, est l’étape inverse de l’étape de décrochage. Elle se traduit par une activation des moyens d’accroche réversible, qui permet le soulèvement du couvercle de la plateforme de support et son accroche au bâti de la station de recouvrement de l’appareil de synthèse enzymatique. Such an attachment step, or fixation step, is the opposite step of the unhooking step. It results in activation of the reversible attachment means, which allows the cover of the support platform to be lifted and attached to the frame of the covering station of the enzymatic synthesis apparatus.
Selon une autre caractéristique, à l’issue de la deuxième étape de positionnement, une distance entre la plateforme de support et le couvercle est inférieure à deux millimètres. According to another characteristic, at the end of the second positioning step, a distance between the support platform and the cover is less than two millimeters.
Une telle distance permet d’une part d’éviter un surdimensionnement des moyens d’accroche réversibles et d’autre part de limiter l’impact du choc entre le couvercle et la plateforme de support lorsqu’au moins les moyens d’accroche réversible changent d’état et que le couvercle vient recouvrir la plaque de substrat. Such a distance makes it possible on the one hand to avoid oversizing of the reversible hooking means and on the other hand to limit the impact of the shock between the cover and the support platform when at least the reversible hooking means change state and that the cover covers the substrate plate.
Selon une autre caractéristique de l’invention, entre l’étape de décrochage et l’étape d’accroche, la plateforme de support est déplacée jusqu’à une station d’imagerie distincte de la station d’impression et de la station de recouvrement.According to another characteristic of the invention, between the unhooking step and the hooking step, the support platform is moved to an imaging station distinct from the printing station and the covering station .
Après l’étape de décrochage, c'est-à-dire une fois que le couvercle est déposé en recouvrement de la plaque de substrat, la plateforme de support quitte la station de recouvrement et est dirigée vers une ou plusieurs autres stations de l’appareil de synthèse enzymatique. La plateforme de support peut ainsi être conduite à une station d’imagerie où des opérations de vérification de la synthèse enzymatique sont effectuées. After the unhooking step, that is to say once the cover is placed on top of the substrate plate, the support platform leaves the station recovery and is directed to one or more other stations of the enzymatic synthesis apparatus. The support platform can thus be taken to an imaging station where operations to verify the enzymatic synthesis are carried out.
Selon une autre caractéristique, à l’issue de l’étape d’accroche, la plateforme de support est déplacée jusqu’à une station de nettoyage distincte de la station d’impression et de la station de recouvrement. According to another characteristic, at the end of the hanging step, the support platform is moved to a cleaning station separate from the printing station and the covering station.
Au sein de cette station de nettoyage, la plaque de substrat peut subir un lavage ou rinçage. Le déplacement de la plateforme de support vers la station de nettoyage intervient une fois que le couvercle a été retiré de la plateforme de support, lorsque ce lavage ou rinçage nécessite que la plaque de substrat soit accessible. Within this cleaning station, the substrate plate can be washed or rinsed. Moving the support platform to the cleaning station occurs after the cover has been removed from the support platform, when this washing or rinsing requires the substrate plate to be accessible.
De manière alternative, l’opération de lavage ou de rinçage peut être faite alors que le couvercle est déposé sur la plateforme de support, en recouvrement de la plaque de substrat. Le couvercle peut comporter à cet effet des moyens de circulation de fluide, que ce soit de l’air ou du liquide, à une température donnée. Le couvercle peut également comporter des moyens de circulation d’un fluide permettant l’opération de déprotection nécessaire au procédé de synthèse enzymatique. Alternatively, the washing or rinsing operation can be carried out while the cover is placed on the support platform, covering the substrate plate. For this purpose, the cover may include means for circulating fluid, whether air or liquid, at a given temperature. The cover may also include means for circulating a fluid allowing the deprotection operation necessary for the enzymatic synthesis process.
Selon une caractéristique de l’invention, après l’étape de décrochage, une pompe est actionnée pour faire circuler un fluide entre l’entrée et la sortie du couvercle. According to one characteristic of the invention, after the unhooking step, a pump is actuated to circulate a fluid between the inlet and outlet of the cover.
La pompe permet de faciliter la circulation du fluide d’une extrémité à l’autre du couvercle. The pump facilitates the circulation of fluid from one end of the cover to the other.
Selon une autre caractéristique, la pompe est reliée fluidiquement à la station de nettoyage. According to another characteristic, the pump is fluidly connected to the cleaning station.
Une telle disposition permet de faciliter la gestion des fluides au sein de l’appareil de synthèse enzymatique. Such an arrangement makes it possible to facilitate the management of fluids within the enzymatic synthesis apparatus.
Selon une caractéristique, après l’étape de décrochage, la solution saline saturée diffuse dans le couvercle. D’autres caractéristiques, détails et avantages de l’invention ressortiront plus clairement à la lecture de la description qui suit d’une part, et d’exemples de réalisation donnés à titre indicatif et non limitatif en référence aux dessins annexés d’autre part, sur lesquels : According to one characteristic, after the unhooking step, the saturated saline solution diffuses into the lid. Other characteristics, details and advantages of the invention will emerge more clearly on reading the description which follows on the one hand, and examples of embodiment given for informational and non-limiting purposes with reference to the appended drawings on the other hand. , on which ones :
[Fig. 1] illustre, schématiquement, un appareil de synthèse enzymatique selon l’invention comprenant un dispositif d’impression, selon une vue en perspective ? [Fig. 1] illustrates, schematically, an enzymatic synthesis apparatus according to the invention comprising a printing device, in a perspective view?
[Fig. 2] illustre, schématiquement, une station d’impression comprenant le dispositif d’impression de la figure 1, une seule buse de projection étant ici rendue visible ; [Fig. 2] illustrates, schematically, a printing station comprising the printing device of Figure 1, a single projection nozzle being made visible here;
[Fig. 3] illustre, schématiquement en vue de dessus, un couvercle selon un premier aspect de l’invention configuré au sein de l’appareil de synthèse enzymatique de la figure 1 pour être en recouvrement d’une plaque de substrat rendue apparente en pointillés ; [Fig. 3] illustrates, schematically in top view, a cover according to a first aspect of the invention configured within the enzymatic synthesis apparatus of Figure 1 to cover a substrate plate made visible in dotted lines;
[Fig. 4] illustre, schématiquement, le premier mode de réalisation du couvercle de la figure 3 selon une vue de côté ; [Fig. 4] illustrates, schematically, the first embodiment of the cover of Figure 3 in a side view;
[Fig. 5] illustre, schématiquement, un deuxième mode de réalisation du couvercle configuré au sein de l’appareil de synthèse enzymatique de la figure 1 pour être en recouvrement d’une plaque de substrat, le couvercle n’étant ici pas équipé d’une vitre de fermeture transparente ; [Fig. 5] illustrates, schematically, a second embodiment of the cover configured within the enzymatic synthesis apparatus of Figure 1 to cover a substrate plate, the cover here not being equipped with a window transparent closure;
[Fig. 6] illustre, schématiquement, le deuxième mode de réalisation du couvercle de la figure 5, selon une vue de côté, le couvercle étant ici équipé d’une vitre de fermeture transparente ; [Fig. 6] illustrates, schematically, the second embodiment of the cover of Figure 5, in a side view, the cover here being equipped with a transparent closing window;
[Fig. 7] illustre, schématiquement, un troisième mode de réalisation du couvercle configuré au sein de l’appareil de synthèse enzymatique de la figure 1 pour être en recouvrement d’une plaque de substrat ; [Fig. 7] illustrates, schematically, a third embodiment of the cover configured within the enzymatic synthesis apparatus of Figure 1 to cover a substrate plate;
[Fig. 8] illustre, schématiquement, des étapes d’un procédé de synthèse enzymatique faisant intervenir l’appareil de synthèse enzymatique de la figure 1.[Fig. 8] illustrates, schematically, the steps of an enzymatic synthesis process involving the enzymatic synthesis apparatus of Figure 1.
Les caractéristiques, variantes et les différentes formes de réalisation de l’invention peuvent être associées les unes avec les autres, selon diverses combinaisons, dans la mesure où elles ne sont pas incompatibles ou exclusives les unes par rapport aux autres. On pourra notamment imaginer des variantes de l’invention ne comprenant qu’une sélection de caractéristiques décrites par la suite de manière isolée des autres caractéristiques décrites, si cette sélection de caractéristiques est suffisante pour conférer un avantage technique et/ ou pour différencier l’invention par rapport à l’état de la technique antérieur. The characteristics, variants and different embodiments of the invention can be associated with each other, in various combinations, as long as they are not incompatible or exclusive. in relation to each other. In particular, it will be possible to imagine variants of the invention comprising only a selection of characteristics described subsequently in isolation from the other characteristics described, if this selection of characteristics is sufficient to confer a technical advantage and/or to differentiate the invention. compared to the prior art.
Sur les figures, les éléments communs à plusieurs figures conservent la même référence. In the figures, elements common to several figures retain the same reference.
Les figures i et 2 illustrent ainsi, schématiquement, un appareil de synthèse enzymatique comprenant au moins un dispositif d’impression 1 à jet d’encre, un tel dispositif d’impression 1 étant configuré pour la synthèse enzymatique de polynucléotides. Ces polynucléotides peuvent être des biomolécules telles que des molécules d’ADN et/ ou d’ARN, qu’elles soient sous forme de simples brins ou de doubles brins. Figures i and 2 thus illustrate, schematically, an enzymatic synthesis apparatus comprising at least one inkjet printing device 1, such a printing device 1 being configured for the enzymatic synthesis of polynucleotides. These polynucleotides can be biomolecules such as DNA and/or RNA molecules, whether in the form of single strands or double strands.
Le dispositif d’impression i comprend une tête d’impression 2 équipée de buses 4, l’une de ces buses 4 étant particulièrement visible en figure 2. Le dispositif d'impression 1 est configuré pour que de l'encre 6 puisse circuler depuis des cartouches d'encre jusqu’aux buses 4. L'encre 6 utilisée dans le dispositif d'impression 1 contient des réactifs de synthèse enzymatique qui sont nécessaires à une réaction d'élongation. Ces réactifs de synthèse enzymatique peuvent comprendre un nucléoside triphosphate, dont l’extrémité 3' est protégée, ainsi qu'une enzyme d'élongation. Cette enzyme d'élongation peut par exemple être une polymérase : si la molécule à synthétiser est une molécule d'ADN, la polymérase sera une ADN polymérase, tandis que si c'est une molécule d'ARN est recherchée, la polymérase sera une ARN polymérase. Le nucléoside triphosphate contenu dans les réactifs de synthèse enzymatique est protégé, c'est-à-dire qu'il est associé à un groupe protecteur de formule -R1NR22 où Ri est choisi parmi H, O, -COOH, CN, un groupe alkyle linéaire ou ramifié de 1 à 6 atomes de carbone, un groupe aryle, de préférence choisi parmi H, O, un groupe alkyle linéaire ou ramifié de 1 à 6 atomes de carbone, et où R2 est choisi parmi H ou un groupe alkyle linéaire ou ramifié de 1 à 6 atomes de carbone, de manière à bloquer son élongation. Dans un mode de réalisation préféré, le groupe protecteur est un aminoxyle. Comme mentionné précédemment, l'encre 6 utilisée dans le dispositif d'impression i peut être stockée dans des cartouches d'encre. Ainsi, le nombre de cartouches d'encre dépend du nombre de nucléosides triphosphates protégés en leur extrémité 3' nécessaires pour la réaction d'élongation et disponibles dans le dispositif d’impression 1. Ces nucléosides triphosphates peuvent être l'adénine modifiée, la cytosine modifiée, la guanine modifiée, la thymine modifiée et/ou l'uracile modifié. Par conséquent, il peut y avoir, tel qu’illustré sur la figure 1, une première cartouche d'encre 8 pour l'encre 6 contenant l'adénine modifiée et l'enzyme d'élongation, une deuxième cartouche d'encre 10 pour l'encre 6 contenant la cytosine modifiée et l'enzyme d'élongation, une troisième cartouche d'encre 12 pour l'encre 6 contenant la guanine modifiée et l'enzyme d'élongation et une quatrième cartouche d'encre 14 pour l'encre 6 contenant la thymine modifiée et/ ou l'uracile modifié et l'enzyme d'élongation.The printing device i comprises a print head 2 equipped with nozzles 4, one of these nozzles 4 being particularly visible in Figure 2. The printing device 1 is configured so that ink 6 can circulate from from the ink cartridges to the nozzles 4. The ink 6 used in the printing device 1 contains enzymatic synthesis reagents which are necessary for an elongation reaction. These enzyme synthesis reagents may include a nucleoside triphosphate, the 3' end of which is protected, as well as an elongation enzyme. This elongation enzyme can for example be a polymerase: if the molecule to be synthesized is a DNA molecule, the polymerase will be a DNA polymerase, while if an RNA molecule is sought, the polymerase will be an RNA. polymerase. The nucleoside triphosphate contained in the enzymatic synthesis reagents is protected, that is to say it is associated with a protecting group of formula -R1NR2 2 where Ri is chosen from H, O, -COOH, CN, a group linear or branched alkyl of 1 to 6 carbon atoms, an aryl group, preferably chosen from H, O, a linear or branched alkyl group of 1 to 6 carbon atoms, and where R 2 is chosen from H or an alkyl group linear or branched from 1 to 6 carbon atoms, so as to block its elongation. In a preferred embodiment, the protecting group is an aminoxyl. As mentioned previously, the ink 6 used in the printing device i can be stored in ink cartridges. Thus, the number of ink cartridges depends on the number of nucleoside triphosphates protected at their 3' end necessary for the elongation reaction and available in the printing device 1. These nucleoside triphosphates can be modified adenine, cytosine modified, modified guanine, modified thymine and/or modified uracil. Therefore, there may be, as illustrated in Figure 1, a first ink cartridge 8 for the ink 6 containing the modified adenine and the elongation enzyme, a second ink cartridge 10 for the ink 6 containing the modified cytosine and the elongation enzyme, a third ink cartridge 12 for the ink 6 containing the modified guanine and the elongation enzyme and a fourth ink cartridge 14 for the ink 6 containing modified thymine and/or modified uracil and elongation enzyme.
Sans sortir du contexte de l’invention, chaque encre au sein des cartouches d’encre peut comporter, seul ou en combinaison avec d’autres réactifs, un modificateur de viscosité, un agent de surface, un colorant qui peut être utile pour l’imagerie ultérieure, un humectant, un cosolvant, un cofacteur ou autres.Without departing from the context of the invention, each ink within the ink cartridges may comprise, alone or in combination with other reagents, a viscosity modifier, a surfactant, a dye which may be useful for subsequent imaging, a humectant, a cosolvent, a cofactor or others.
Les réactifs de synthèse enzymatique présents dans l'encre 6 ont vocation à être déposés sur une plaque de substrat 16. Cette plaque de substrat 16 peut être du verre, de la silice, de l'oxyde de silicium, du plastique, du métal ou des surfaces similaires, mais également d'autres surfaces telles que par exemple des tissus biologiques. Elle peut être transparente, semi-transparente, opaque, colorée ou non colorée. Elle peut également présenter une configuration en deux dimensions, avec notamment des portions à propriétés hydrophobes ou hydrophiles, ou en trois dimensions, avec des puits délimitant en leur sein les sites de réactions. Une telle plaque de substrat 16 est ici disposée sur une plateforme de support 18, qui sera décrite par la suite et qui permet notamment le déplacement de la plaque de substrat 16 entre diverses stations ou postes d’opération de l’appareil de synthèse enzymatique, ou encore au sein d’une même station d’opération. On comprend ainsi que la plaque de substrat 16 est mobile au sein de l’appareil de synthèse enzymatique. Une telle mobilité peut par exemple être mise en œuvre par un pilotage informatique, notamment par l’intermédiaire d’un logiciel installé sur un ordinateur. Cette plaque de substrat 16 est plus particulièrement disposée sur une zone de réception 20 de la plateforme de support 18. Cette zone de réception 20 est portée par une cloison de la plateforme de support 18 qui est en regard de la tête d’impression 2. La zone de réception 20 est configurée pour recevoir la plaque de substrat 16 et la maintenir en position, par exemple lors de déplacements de la plateforme de support 18 au sein de l’appareil de synthèse enzymatique.The enzymatic synthesis reagents present in the ink 6 are intended to be deposited on a substrate plate 16. This substrate plate 16 can be glass, silica, silicon oxide, plastic, metal or similar surfaces, but also other surfaces such as for example biological tissues. It can be transparent, semi-transparent, opaque, colored or uncolored. It can also have a two-dimensional configuration, in particular with portions with hydrophobic or hydrophilic properties, or in three dimensions, with wells delimiting the reaction sites within them. Such a substrate plate 16 is here placed on a support platform 18, which will be described subsequently and which in particular allows the movement of the substrate plate 16 between various stations or operating stations of the enzymatic synthesis apparatus, or even within the same operating station. It is thus understood that the substrate plate 16 is mobile within the enzymatic synthesis apparatus. Such mobility can for example be implemented by computer control, in particular via software installed on a computer. This substrate plate 16 is more particularly arranged on a reception zone 20 of the support platform 18. This reception zone 20 is carried by a partition of the support platform 18 which is opposite the print head 2. The receiving zone 20 is configured to receive the substrate plate 16 and hold it in position, for example during movements of the support platform 18 within the enzymatic synthesis apparatus.
La plaque de substrat 16 comprend plusieurs sites de réaction. Chaque site de réaction est distinct des autres sites de réactions et ils ne se chevauchent pas ; en d'autres termes, les sites de réaction ne sont pas contigus. Chaque site de réaction contient au moins un initiateur dont l'extrémité 3' est libre, aussi appelé fragment initiateur. Ce fragment initiateur est un court fragment nucléotidique dont l’élongation résulte en un polynucléotide, qui peut être un polynucléotide d'ADN si le fragment initiateur est un fragment d'ADN ou encore un polynucléotide d'ARN si le fragment initiateur est un fragment d'ARN. Les sites de réaction sont par exemple disposés en rangées, ces rangées s'étendant perpendiculairement à une direction longitudinale L correspondant à une direction d'extension principale de la plaque de substrat 16. Les rangées sont disposées successivement sur la plaque de substrat 16 selon cette direction longitudinale L. The substrate plate 16 includes several reaction sites. Each reaction site is distinct from other reaction sites and they do not overlap; in other words, the reaction sites are not contiguous. Each reaction site contains at least one initiator whose 3' end is free, also called initiator fragment. This initiator fragment is a short nucleotide fragment whose elongation results in a polynucleotide, which can be a DNA polynucleotide if the initiator fragment is a DNA fragment or even an RNA polynucleotide if the initiator fragment is a DNA fragment. 'RNA. The reaction sites are for example arranged in rows, these rows extending perpendicular to a longitudinal direction L corresponding to a main direction of extension of the substrate plate 16. The rows are arranged successively on the substrate plate 16 according to this longitudinal direction L.
L’appareil de synthèse enzymatique et son dispositif d'impression 1 sont mis en œuvre dans le cadre d'une méthode de synthèse enzymatique de tels polynucléotides. Cette méthode de synthèse enzymatique comprend diverses étapes, la complétion de ces étapes formant un cycle. À la fin d'un cycle, au moins certains des fragments initiateurs auront été allongés d'un nucléotide chacun. La répétition de plusieurs cycles conduit à la synthèse de polynucléotides, et la sélection appropriée du type d’encre, c’est-à-dire du type de nucléosides triphosphates projeté à un instant donné sur un site de réaction donné, à chaque cycle permet d’obtenir des polynucléotides d'une séquence prédéterminée. The enzymatic synthesis apparatus and its printing device 1 are implemented as part of a method for the enzymatic synthesis of such polynucleotides. This method of enzymatic synthesis involves various steps, with the completion of these steps forming a cycle. At the end of a cycle, at least some of the initiator fragments will have been elongated by one nucleotide each. The repetition of several cycles leads to the synthesis of polynucleotides, and the appropriate selection of the type of ink, that is to say the type of nucleoside triphosphates projected at a given time on a given reaction site, at each cycle allows to obtain polynucleotides of a predetermined sequence.
Tel qu’évoqué précédemment, la plateforme de support 18 est mobile. Elle peut ainsi être déplacée, au sein de l’appareil de synthèse enzymatique, jusqu’à une station d’impression comprenant le dispositif d’impression 1 et au sein de laquelle de l’encre 6 peut être déposée sur la plaque de substrat 16. À cet effet, la zone de réception 20 porteuse de la plaque de substrat 16 est positionnée sous la tête d’impression 2 de la station d’impression et plus précisément sous les buses de projection 4 de cette tête d’impression 2. Lorsque la zone de réception 20 est en regard de la tête d’impression 2, la plateforme de support 18 est dans une première position qui est illustrée à la figure 2. As mentioned previously, the support platform 18 is mobile. It can thus be moved, within the enzymatic synthesis apparatus, to a printing station comprising the printing device 1 and within which of the ink 6 can be deposited on the substrate plate 16. For this purpose, the receiving zone 20 carrying the substrate plate 16 is positioned under the print head 2 of the printing station and more precisely under the projection nozzles 4 of this print head 2. When the reception zone 20 is facing the print head 2, the support platform 18 is in a first position which is illustrated in Figure 2.
Une fois la plaque de substrat 16 portée par la plateforme de support 18 positionnée de façon adéquate sous la tête d’impression 2, soit dans sa première position, de l’encre 6 est éjectée par les buses 4, tel que cela est représenté en figure 2. Ces buses 4 délivrent ainsi des gouttes d’encre sur les sites de réaction de la plaque de substrat 16, ce qui permet le dépôt des réactifs de synthèse enzymatique dans ces sites de réaction. Un tel dépôt peut être facilité par le mouvement de la tête d’impression relativement à la plaque de substrat 16, de sorte que les buses 4 de cette tête d’impression puissent être positionnées successivement en regard de chaque rangée de sites de réaction. Plus particulièrement, c’est la plaque de substrat 16 et la plateforme de support 18 qui sont déplacés par rapport à la tête d’impression mais certains modes d’impression peuvent prévoir que la plaque de substrat et la tête d’impression soient tous les deux aptes à bouger pour optimiser cette opération de dépôt.Once the substrate plate 16 carried by the support platform 18 is adequately positioned under the print head 2, i.e. in its first position, ink 6 is ejected by the nozzles 4, as shown in Figure 2. These nozzles 4 thus deliver drops of ink to the reaction sites of the substrate plate 16, which allows the deposition of enzymatic synthesis reagents in these reaction sites. Such deposition can be facilitated by the movement of the print head relative to the substrate plate 16, so that the nozzles 4 of this print head can be positioned successively opposite each row of reaction sites. More particularly, it is the substrate plate 16 and the support platform 18 which are moved relative to the print head but certain printing modes can provide that the substrate plate and the print head are all two able to move to optimize this deposit operation.
Le rôle de l'enzyme d'élongation contenue dans l'encre 6 est d'allonger les fragments initiateurs présents dans les sites de réaction, à l'aide des nucléosides triphosphates modifiés de sorte que leurs extrémités 3' soient protégées et qui sont également contenus dans l'encre 6. Plus précisément, l'enzyme d'élongation ajoute un unique nucléotide modifié à une extrémité 3' libre d'un nucléotide de terminaison d'un fragment initiateur donné, ce qui génère un fragment initiateur allongé. En raison de la nature modifiée des nucléotides qui sont bloqués à leur extrémité 3', par exemple avec un groupe protecteur aminoxyle, dans une goutte d’encre donnée, dès lors qu’un premier nucléotide modifié de la sorte s'est greffé au fragment initiateur, aucun autre nucléotide ne peux venir se greffer puisque la terminaison libre du brin ainsi formé est protégée. En d’autres termes, pour une goutte d’encre donnée, un seul des nucléotides présents dans la goutte est capable d'être lié au nucléotide de terminaison libre du fragment initiateur. Cette protection garantit que les nucléotides sont ajoutés au fragment initiateur un par un pour chaque cycle, évitant ainsi les erreurs dans la séquence polynucléotidique. The role of the elongation enzyme contained in ink 6 is to extend the initiator fragments present in the reaction sites, using nucleoside triphosphates modified so that their 3' ends are protected and which are also contained in ink 6. More precisely, the elongation enzyme adds a single modified nucleotide to a free 3' end of a terminating nucleotide of a given initiator fragment, which generates an elongated initiator fragment. Due to the modified nature of the nucleotides which are blocked at their 3' end, for example with an aminoxyl protecting group, in a given drop of ink, once a first nucleotide modified in this way is grafted to the fragment initiator, no other nucleotide can be grafted since the free end of the strand thus formed is protected. In other words, for a given drop of ink, only one of the nucleotides present in the drop is capable of being linked to the free terminating nucleotide of the initiator fragment. This protection ensures that Nucleotides are added to the initiator fragment one by one for each cycle, thus avoiding errors in the polynucleotide sequence.
La réaction d’élongation peut se produire au cours d’une étape d’incubation, qui correspond à une durée nécessaire à cette élongation. Au cours de cette étape d’incubation, un couvercle 22 est selon l’invention déposé en recouvrement de la plaque de substrat 16 pour faciliter l’élongation. Un tel couvercle 22 et son dépôt sur la plateforme de support 20 seront décrits plus en détail ci-après. Il sera notamment décrit l’intérêt de ce couvercle pour éviter l’évaporation des gouttes d’encre projetées sur la plaque de substrat, pour chauffer les gouttes lors de l’étape d’incubation et/ ou l’étape d’imagerie, pour permettre de réaliser des fonctions de déprotection, de lavage et de séchage dans des petits volumes notamment en formant un conduit de circulation de fluide approprié, et/ou de permettre dans ce contexte l’imagerie dans une station d’imagerie adéquate.The elongation reaction can occur during an incubation step, which corresponds to a duration necessary for this elongation. During this incubation step, a cover 22 is according to the invention placed on top of the substrate plate 16 to facilitate elongation. Such a cover 22 and its deposit on the support platform 20 will be described in more detail below. In particular, the benefit of this cover will be described in preventing the evaporation of the ink drops projected onto the substrate plate, in heating the drops during the incubation step and/or the imaging step, in make it possible to carry out deprotection, washing and drying functions in small volumes in particular by forming an appropriate fluid circulation conduit, and/or to allow in this context imaging in an appropriate imaging station.
La méthode de synthèse enzymatique comprend par la suite une étape de déprotection, au cours de laquelle les fragments allongés protégés en leurs extrémités 3' sont déprotégés pour former des fragments allongés ayant une extrémité 3' libre. L'étape de déprotection est donc un retrait des groupes protecteurs des fragments allongés, de sorte que les fragments allongés puissent être de nouveau allongés lors d'un cycle ultérieur. L'étape de déprotection est réalisée par une solution de déprotection qui contient des réactifs spécifiques tels que des agents réducteurs ou encore des enzymes de clivage enzymatique. La plaque de substrat 16 portée par la plateforme de support 18 peut par exemple être immergée dans un bain de cette solution de déprotection pour la mise en œuvre de cette étape de déprotection. L’étape de déprotection peut être suivie d’une étape de nettoyage au sein d’une station de nettoyage de l’appareil enzymatique, au cours de laquelle la plaque de substrat 16 est plongée dans un bain de solution de lavage ou de rinçage. Dans chacune de ces étapes, la plateforme de support peut être descendue doucement à la surface d’un liquide, avec la plaque de substrat dépourvue de couvercle pour faciliter l’immersion des sites de réaction. The enzymatic synthesis method subsequently comprises a deprotection step, during which the elongated fragments protected at their 3' ends are deprotected to form elongated fragments having a free 3' end. The deprotection step is therefore a removal of the protective groups from the elongated fragments, so that the elongated fragments can be elongated again in a subsequent cycle. The deprotection step is carried out by a deprotection solution which contains specific reagents such as reducing agents or even enzymatic cleavage enzymes. The substrate plate 16 carried by the support platform 18 can for example be immersed in a bath of this deprotection solution for the implementation of this deprotection step. The deprotection step can be followed by a cleaning step within a cleaning station of the enzymatic apparatus, during which the substrate plate 16 is immersed in a bath of washing or rinsing solution. In each of these stages, the support platform can be lowered gently to the surface of a liquid, with the substrate plate devoid of a cover to facilitate immersion of the reaction sites.
De manière alternative, le couvercle peut être laissé en position sur la plateforme de support et être configuré pour former un conduit de circulation de fluide entre la plaque de substrat et lui-même, la solution de déprotection étant alors poussée à travers ce conduit de circulation. Il est dans ce contexte avantageux que la hauteur du conduit de circulation de fluide soit limitée à quelques millimètres, ou à quelques dizaines de millimètres tout au plus, pour limiter la quantité de liquide utilisée pour l’opération de déprotection. Alternatively, the cover can be left in position on the support platform and configured to form a circulation conduit of fluid between the substrate plate and itself, the deprotection solution then being pushed through this circulation conduit. In this context, it is advantageous for the height of the fluid circulation conduit to be limited to a few millimeters, or to a few tens of millimeters at most, to limit the quantity of liquid used for the deprotection operation.
Ces deux cas de figures s’appliquent également pour l’utilisation d’une opération de nettoyage de la plaque de substrat, la solution de déprotection étant alors remplacée par un liquide de nettoyage. These two scenarios also apply to the use of a cleaning operation of the substrate plate, the deprotection solution then being replaced by a cleaning liquid.
L’appareil de synthèse enzymatique peut, au titre des stations d’opérations évoquées précédemment, comprendre une station d’imagerie. Une telle station d’imagerie, qui permet une vérification du déroulement de la synthèse enzymatique, comprend un microscope incorporant une caméra 24 numérique qui est mise en œuvre dans le cadre d’une détection de la présence et/ ou du positionnement des gouttes d’encre sur la plaque de substrat 16. La caméra 24 génère ainsi des images de la plaque de substrat 16. De telles images sont ensuite traitées par un logiciel intégré au dispositif d’impression 1, ce logiciel étant capable d’analyser des informations telles que la présence, l’absence, la taille, la forme ou encore le contenu des gouttes d’encre déposées sur la plaque de substrat 16, par exemple pour s’assurer que les gouttes d’encre ne se chevauchent pas ou n’ont pas débordé des sites de réaction. Dans d’autres modes de réalisation non illustrés ici, la station d’imagerie peut être équipée de deux caméras décalées l’une et l’autre par rapport à la plaque de substrat 16, pour réaliser des images stéréoscopiques. The enzymatic synthesis apparatus may, as part of the operating stations mentioned above, include an imaging station. Such an imaging station, which allows verification of the progress of the enzymatic synthesis, comprises a microscope incorporating a digital camera 24 which is implemented in the context of detecting the presence and/or positioning of the drops of ink on the substrate plate 16. The camera 24 thus generates images of the substrate plate 16. Such images are then processed by software integrated into the printing device 1, this software being capable of analyzing information such as the presence, absence, size, shape or even content of the ink drops deposited on the substrate plate 16, for example to ensure that the ink drops do not overlap or have not overwhelmed the reaction sites. In other embodiments not illustrated here, the imaging station can be equipped with two cameras offset from each other relative to the substrate plate 16, to produce stereoscopic images.
Le couvercle 22, qui est destiné à recouvrir la plaque de substrat 16, va maintenant être décrit plus en détail en relation avec les figures 3 à 8. The cover 22, which is intended to cover the substrate plate 16, will now be described in more detail in relation to Figures 3 to 8.
Dans chacun des modes de réalisation qui vont être décrits, le couvercle 22 est configuré pour être déposé sur la plateforme de support 18 en recouvrement de la plaque de substrat 16, au moins le temps de l’incubation de la synthèse enzymatique, et retiré de celle-ci selon un mécanisme qui sera décrit ultérieurement. Selon les modes de réalisation, et notamment la possibilité de réaliser à travers une paroi transparente du couvercle une opération d’imagerie, ou encore la possibilité de laisser passer un fluide de déprotection ou de nettoyage à travers un conduit de circulation formé entre le couvercle et la plateforme de support, le couvercle peut être laissé en position sur la plateforme de support plus ou moins longtemps, entre deux opérations d’impression par jet d’encre lors desquelles le couvercle doit être retiré et reprendre sa position d’origine, à distance de la plaque de support. In each of the embodiments which will be described, the cover 22 is configured to be deposited on the support platform 18 covering the substrate plate 16, at least for the duration of the incubation of the enzymatic synthesis, and removed from this according to a mechanism which will be described later. According to the embodiments, and in particular the possibility of carrying out an imaging operation through a transparent wall of the cover, or even the possibility of letting a deprotection or deprotection fluid pass through. cleaning through a circulation conduit formed between the cover and the support platform, the cover can be left in position on the support platform for a longer or shorter time, between two inkjet printing operations during which the cover must be removed and return to its original position, away from the support plate.
Le couvercle 22 présente une forme sensiblement parallélépipédique. Il est composé de parois longitudinales 26 et latérales 28 jointes les unes aux autres pour former le pourtour du couvercle. Le couvercle 22 comporte en outre une paroi supérieure 30 et une paroi inférieure 32, qui sont opposées l’une à l’autre et jointes par les parois longitudinales 26 et latérales 28. The cover 22 has a substantially parallelepiped shape. It is composed of longitudinal 26 and lateral 28 walls joined to each other to form the periphery of the cover. The cover 22 further comprises an upper wall 30 and a lower wall 32, which are opposed to each other and joined by the longitudinal walls 26 and lateral walls 28.
Les parois supérieure 30, inférieure 32, longitudinales 26 et latérales 28 définissent un volume du couvercle 22. Au sein de ce volume, le couvercle 22 présente une cavité 34 configurée pour loger la plaque de substrat 16 et dimensionnée à cet effet lorsque le couvercle est rapporté contre la plateforme de support. Une telle cavité 34 est particulièrement visible aux figures 4 à 7. La cavité 34 correspond à un évidement au sein du volume du couvercle 22 réalisé depuis la paroi inférieure 32. Les dimensions de la cavité 34 sont adaptées aux dimensions de la plaque de substrat, notamment pour que l’ensemble des sites de réaction soit recouvert par le couvercle sans que le couvercle n’écrase l’un des sites de réaction. De façon préférée, afin de faciliter la fixation du couvercle et par la suite le décrochage de ce couvercle sans faire bouger le contenu au sein des sites de réaction, les dimensions de la cavité sont adaptées pour que l’ensemble de la plaque de substrat soit logé à l’intérieur de la cavité et que la paroi inférieure 32 du couvercle soit au contact de la plateforme de support et non pas des bords de la plaque de substrat. The upper 30, lower 32, longitudinal 26 and lateral 28 walls define a volume of the cover 22. Within this volume, the cover 22 has a cavity 34 configured to accommodate the substrate plate 16 and dimensioned for this purpose when the cover is reported against the support platform. Such a cavity 34 is particularly visible in Figures 4 to 7. The cavity 34 corresponds to a recess within the volume of the cover 22 made from the lower wall 32. The dimensions of the cavity 34 are adapted to the dimensions of the substrate plate, in particular so that all of the reaction sites are covered by the cover without the cover crushing one of the reaction sites. Preferably, in order to facilitate the fixing of the cover and subsequently the unhooking of this cover without moving the contents within the reaction sites, the dimensions of the cavity are adapted so that the entire substrate plate is housed inside the cavity and that the lower wall 32 of the cover is in contact with the support platform and not with the edges of the substrate plate.
Tel qu’évoqué précédemment, le couvercle 22 permet de faciliter l’élongation du fragment initiateur et/ou du polynucléotide en cours d’élongation, lors de l’étape d’incubation. Il est en effet nécessaire, pour que cette élongation se déroule dans des conditions optimales, de s’assurer que les gouttes d’encre qui ont été déposées sur la plaque de substrat 16 ne sèchent pas et d’éviter leur évaporation le temps de la période d’incubation nécessaire à cette élongation. Le couvercle 22 est à cette fin équipé d’un moyen d’humidification de la plaque de substrat 16. As mentioned previously, the cover 22 makes it possible to facilitate the elongation of the initiator fragment and/or of the polynucleotide being elongated, during the incubation step. It is in fact necessary, for this elongation to take place under optimal conditions, to ensure that the drops of ink which have been deposited on the substrate plate 16 do not dry and to avoid their evaporation during the processing. incubation period necessary for this elongation. THE cover 22 is for this purpose equipped with a means of humidifying the substrate plate 16.
Différents moyens peuvent par ailleurs être intégrés dans le couvercle, comme par exemple, sans que cette liste soit exhaustive, au moins l’un parmi des moyens de chauffage de la plaque de substrat, des moyens de chauffage de parois transparentes qui peuvent équiper le couvercle pour éviter la condensation sur ces parois transparentes, ou des moyens formant des passages pour un liquide ou de l’air au sein du couvercle, de manière additionnelle ou alternative à la présence du conduit de circulation précédemment évoqué et formé entre le couvercle et la plateforme de support. Different means can also be integrated into the cover, such as for example, without this list being exhaustive, at least one among means for heating the substrate plate, means for heating transparent walls which can equip the cover to avoid condensation on these transparent walls, or means forming passages for a liquid or air within the cover, additionally or alternatively to the presence of the circulation conduit previously mentioned and formed between the cover and the platform support.
Le moyen d’humidification comprend un réservoir 35 ménagé dans le couvercle 22. Le réservoir 35 est configuré pour recevoir un fluide permettant l’humidification de la plaque de substrat, qui est par exemple une solution saline saturée. Le fluide destiné à être embarqué dans le réservoir peut être préchauffé, ou bien chauffé en cours de procédé. The humidification means comprises a reservoir 35 provided in the cover 22. The reservoir 35 is configured to receive a fluid allowing the humidification of the substrate plate, which is for example a saturated saline solution. The fluid intended to be loaded into the tank can be preheated, or heated during the process.
Le réservoir 35 constitue ainsi un espace de stockage pour le fluide permettant l’humidification. Le réservoir 35 peut à cet effet être une cartouche de la solution saline saturée ou encore un compartiment apte à recevoir cette solution par l’intermédiaire d’une seringue. Une telle solution saline saturée peut par exemple comprendre du nitrate d’ammonium, du sulfate d’ammonium, du chlorure de magnésium, du nitrate de magnésium, du chlorure de lithium, du sulfate de potassium, du chlorure de potassium, de l’acétate de potassium, de l’hydroxyde de potassium, du chlorure de sodium, du nitrite de sodium, du dichromate de sodium, ou encore un mélange de deux ou plus de ces éléments. Un choix parmi ces solutions pourra être opéré en fonction d’un degré d’humidité recherché. The reservoir 35 thus constitutes a storage space for the fluid allowing humidification. The reservoir 35 can for this purpose be a cartridge of the saturated saline solution or even a compartment capable of receiving this solution via a syringe. Such a saturated saline solution may for example comprise ammonium nitrate, ammonium sulfate, magnesium chloride, magnesium nitrate, lithium chloride, potassium sulfate, potassium chloride, acetate potassium hydroxide, sodium chloride, sodium nitrite, sodium dichromate, or a mixture of two or more of these elements. A choice among these solutions can be made depending on the desired humidity level.
Selon l’invention, le moyen d’humidification, ici le réservoir 35, est apte à coopérer avec la cavité 34. La solution saline saturée peut ainsi charger en humidité, à partir du réservoir 35, l’air présent ou amené à pénétrer dans la cavité 34 du couvercle 22. According to the invention, the humidification means, here the reservoir 35, is able to cooperate with the cavity 34. The saturated saline solution can thus load with humidity, from the reservoir 35, the air present or brought to penetrate into the cavity 34 of the cover 22.
Dans un premier mode de réalisation, illustré sur les figures 3 et 4, le réservoir 35 est disposé au sein du volume du couvercle 22 et il s’étend à proximité de la paroi supérieure 30, à distance de chacune des parois longitudinales 26 et latérales 28. Le réservoir 35 peut consister en un dégagement de matière formé au sein du couvercle 22 depuis la paroi supérieure, pour recevoir une cartouche de produit d’humidification, ou bien consister en une cavité fermée au sein du couvercle, destinée à recevoir directement du produit d’humidification. Le réservoir 35 est par ailleurs sensiblement parallèle à des plans dans lesquels s’étendent principalement cette cavité 34 et la plaque de substrat 16, de sorte que le réservoir 35, la cavité 34 et la plaque de substrat 16 lorsqu’elle est reçue dans la cavité sont superposés dans cet ordre de la paroi supérieure à la paroi inférieure du couvercle. Dans ce premier mode de réalisation, le positionnement du réservoir, en recouvrement de la plaque de substrat, peut gêner l’imagerie nécessaire après l’incubation pour s’assurer que les sites de réaction sont remplis conformément à ce qui est souhaité, et il peut être préférable de retirer le couvercle pour réaliser ces opérations d’imagerie. Toutefois, le réservoir peut être équipé de vitres transparentes, avec l’une qui forme partie de la paroi supérieure du couvercle et l’autre qui est disposée entre le réservoir et la cavité, l’imagerie pouvant être réalisée à travers les vitres transparentes et le fluide présent dans le réservoir dès lors que le fluide, qui est par exemple la solution saline, ne présente pas de remous ou de bulles en surface. In a first embodiment, illustrated in Figures 3 and 4, the reservoir 35 is arranged within the volume of the cover 22 and it extends close to the upper wall 30, at a distance from each of the longitudinal 26 and lateral walls 28. The reservoir 35 may consist of a clearance of material formed within the cover 22 from the upper wall, to receive a cartridge of humidification product, or else consist in a closed cavity within the cover, intended to directly receive humidification product. The reservoir 35 is moreover substantially parallel to planes in which this cavity 34 and the substrate plate 16 mainly extend, so that the reservoir 35, the cavity 34 and the substrate plate 16 when it is received in the cavity are superimposed in this order from the upper wall to the lower wall of the cover. In this first embodiment, the positioning of the reservoir, covering the substrate plate, can interfere with the imaging necessary after incubation to ensure that the reaction sites are filled as desired, and it It may be preferable to remove the cover to perform these imaging operations. However, the tank can be equipped with transparent windows, with one which forms part of the upper wall of the cover and the other which is placed between the tank and the cavity, imaging can be carried out through the transparent windows and the fluid present in the reservoir as long as the fluid, which is for example the saline solution, does not present swirls or bubbles on the surface.
Dans un deuxième mode de réalisation, illustré sur les figures 5 et 6, le réservoir 35 est là encore disposé au sein du volume du couvercle 22, mais cette fois autour de la cavité. Le réservoir 35 formant le moyen d’humidification est une chambre délimitée latéralement par un muret 37 participant à délimiter à la fois la cavité 34 et la chambre 35. Un fluide apte à générer de l’humidité est disposé dans le fond de la chambre 35 et l’humidité peut passer dans la cavité 34 via un passage 370 réalisé entre la chambre et la cavité à l’opposé de la paroi de fond de la chambre. Plus particulièrement, le muret 37 s’étend partiellement sur la hauteur de la chambre pour former le passage entre la chambre et la cavité. De la sorte, le muret 37 est configuré pour que l’humidité puisse passer de la chambre jusqu’à la cavité tout en maintenant le fluide au sein de la chambre, à distance de la plaque de substrat logée dans la cavité. Les parois longitudinales 26 et latérales 28 présentent un décroché 27 pour former une surface d’accueil d’une vitre transparente 39, visible sur la figure 6 et formant partie de la paroi supérieure 30. In a second embodiment, illustrated in Figures 5 and 6, the reservoir 35 is again arranged within the volume of the cover 22, but this time around the cavity. The reservoir 35 forming the humidification means is a chamber delimited laterally by a low wall 37 helping to delimit both the cavity 34 and the chamber 35. A fluid capable of generating humidity is placed at the bottom of the chamber 35 and the humidity can pass into the cavity 34 via a passage 370 made between the chamber and the cavity opposite the bottom wall of the chamber. More particularly, the low wall 37 extends partially over the height of the chamber to form the passage between the chamber and the cavity. In this way, the wall 37 is configured so that the humidity can pass from the chamber to the cavity while maintaining the fluid within the chamber, at a distance from the substrate plate housed in the cavity. The longitudinal walls 26 and side walls 28 have a recess 27 to form a receiving surface for a transparent window 39, visible in Figure 6 and forming part of the upper wall 30.
Dans ce deuxième mode de réalisation, le positionnement du réservoir, en périphérie de la cavité, ne gêne pas l’imagerie qui est réalisée à travers la vitre transparente, et il est possible de laisser le couvercle en place. In this second embodiment, the positioning of the reservoir, on the periphery of the cavity, does not interfere with the imaging which is carried out through the transparent window, and it is possible to leave the cover in place.
Par ailleurs, la figure 6 rend visible une caractéristique possible de l’invention selon laquelle le couvercle, ici dans la chambre 35, peut être équipé de moyens de chauffage 41 permettant ici de maintenir le fluide dans un état générant de l’humidité. Ces moyens de chauffage peuvent être des moyens actifs, pilotables à distance par exemple, ou bien des moyens passifs tels que des feuilles de Kapton par exemple. Furthermore, Figure 6 makes visible a possible characteristic of the invention according to which the cover, here in the chamber 35, can be equipped with heating means 41 making it possible here to maintain the fluid in a state generating humidity. These heating means can be active means, controllable remotely for example, or else passive means such as Kapton sheets for example.
Dans chacun de ces deux modes de réalisation, le réservoir 35 peut être rempli d’un fluide destiné à rester au sein du réservoir pendant la totalité des cycles de la synthèse enzymatique, c’est-à-dire pendant plusieurs périodes d’incubation successives par exemple. De manière alternative, le fluide peut être vidé et le réservoir de nouveau rempli à chacun des cycles. In each of these two embodiments, the reservoir 35 can be filled with a fluid intended to remain within the reservoir during all of the cycles of enzymatic synthesis, that is to say during several successive incubation periods. For example. Alternatively, the fluid can be emptied and the tank refilled at each cycle.
Dans un troisième mode de réalisation représenté à la figure 7, le couvercle comprend une entrée de fluide 36 ainsi qu’une sortie de fluide 38. Plus précisément, l’entrée de fluide 36 et la sortie de fluide 38 sont des canaux chacun ménagé dans l’une des parois du couvercle, ici les parois longitudinales. L’entrée de fluide 36 et la sortie de fluide 38 débouchent plus spécifiquement dans la cavité 34, de sorte qu’elles communiquent fluidiquement avec cette cavité 34. L’entrée de fluide 36 et la sortie de fluide 38 peuvent être disposées en regard l’une de l’autre sur des parois opposées du couvercle 22, sans que ce soit toutefois limitatif de l’invention. Le nombre d’entrées de fluide et de sorties de fluide prévus dans ce deuxième mode de réalisation peut être variable dès lors qu’il y a au moins une entrée de fluide. L’entrée de fluide 36 permet ainsi d’acheminer du fluide au sein du couvercle 22 et l’éventuelle sortie de fluide 38 permet de l’en évacuer si nécessaire. In a third embodiment shown in Figure 7, the cover comprises a fluid inlet 36 as well as a fluid outlet 38. More precisely, the fluid inlet 36 and the fluid outlet 38 are channels each provided in one of the walls of the cover, here the longitudinal walls. The fluid inlet 36 and the fluid outlet 38 open more specifically into the cavity 34, so that they communicate fluidly with this cavity 34. The fluid inlet 36 and the fluid outlet 38 can be arranged facing each other. 'one from the other on opposite walls of the cover 22, without this however being limiting to the invention. The number of fluid inlets and fluid outlets provided in this second embodiment can be variable as long as there is at least one fluid inlet. The fluid inlet 36 thus makes it possible to convey fluid within the cover 22 and the possible fluid outlet 38 makes it possible to evacuate it if necessary.
Dans ce troisième mode de réalisation, le fluide circulant de l’entrée de fluide 36 à la sortie de fluide 38 peut être un fluide humide, par exemple un mélange de gaz sec et d’eau, dont le passage vise à assurer l’humidification de la plaque de substrat 16 lorsque le couvercle 22 la recouvre. Dans ce contexte, l’entrée de fluide et la sortie de fluide forment un moyen d’humidification, ce qui assure l’humidification de la plaque de substrat 16 lorsque le couvercle 22 la recouvre. Un tel fluide humide peut être généré par un appareil tel qu’un humidificateur central, un humidificateur à turbine, un humidificateur à ultrasons, un évaporateur ou encore un vaporisateur à vapeur. Cet appareil peut être disposé au sein de l’appareil de synthèse enzymatique et relié à l’entrée de fluide 36 et à la sortie de fluide 38 par des conduits. L’appareil peut en sus avoir une fonction de purification du fluide, notamment en en retirant les allergènes et polluants. La circulation du fluide de l’entrée de fluide 36 à la sortie de fluide 38 peut s’inscrire dans une boucle de circulation ou encore, pour éviter des contaminations entre deux cycles de synthèse enzymatique, être à sens unique. Une telle circulation du fluide peut par ailleurs être mise en œuvre par l’intermédiaire d’une pompe, par exemple une pompe reliée fluidiquement à la station de nettoyage évoquée précédemment. In this third embodiment, the fluid circulating from the fluid inlet 36 to the fluid outlet 38 may be a wet fluid, for example a mixture of dry gas and water, the passage of which aims to ensure the humidification of the substrate plate 16 when the cover 22 covers it. In this context, the fluid inlet and the fluid outlet form a humidification means, which ensures the humidification of the substrate plate 16 when the cover 22 covers it. Such a humid fluid can be generated by a device such as a central humidifier, a turbine humidifier, an ultrasonic humidifier, an evaporator or even a steam vaporizer. This apparatus can be arranged within the enzymatic synthesis apparatus and connected to the fluid inlet 36 and to the fluid outlet 38 by conduits. The device can also have a function of purifying the fluid, in particular by removing allergens and pollutants. The circulation of the fluid from the fluid inlet 36 to the fluid outlet 38 can be part of a circulation loop or, to avoid contamination between two enzymatic synthesis cycles, be one-way. Such circulation of the fluid can also be implemented via a pump, for example a pump fluidly connected to the cleaning station mentioned above.
Par ailleurs, l’entrée de fluide 36 et la sortie de fluide 38 peuvent être traversées par d’autres types de fluide, et par exemple un fluide de lavage ou un fluide de déprotection tel qu’ils ont pu être évoqués précédemment. Furthermore, the fluid inlet 36 and the fluid outlet 38 can be crossed by other types of fluid, and for example a washing fluid or a deprotection fluid as they may have been mentioned previously.
Bien que non représenté sur les figures, on pourrait sans sortir du cadre de l’invention envisager un mode de réalisation alternatif qui associerait un réservoir 35 de solution saline saturée tel que celui du premier ou du deuxième mode de réalisation à une entrée de fluide 36 et une sortie de fluide 38 telles que celles du troisième mode de réalisation. Dans un tel mode de réalisation alternatif, le réservoir 35 pourrait par exemple être ménagé au sein de la plateforme de support 18 ou disposé au sein de l’appareil de synthèse enzymatique et il serait relié fluidiquement à l’entrée de fluide 36 et à la sortie de fluide 38 du couvercle 22. On comprend ici que le fluide circulant de cette entrée de fluide 36 à cette sortie de fluide 38 serait la solution saline saturée, l’entrée et la sortie de fluide 36, 38 du couvercle 22 constituant alors des moyens de mise en communication du réservoir 35 à la plaque de substrat 16. Selon encore un autre mode de réalisation alternatif, le réservoir 35 de solution saline saturée pourrait être ménagé dans la plateforme de support 18 et comprendre d’autres moyens de mise en communication avec la plaque de substrat 16, qui ne seraient alors plus portés par le couvercle. De tels moyens de mise en communication pourraient par exemple prendre la forme de pions qui seraient abaissés lors du dépôt du couvercle 22 sur la plateforme de support 18, ces pions constituant sinon un barrage entre le réservoir 35 ménagé dans cette plateforme de support 18 et la plaque de substrat 16 qu’elle porte en sa zone de réception 20. Although not shown in the figures, one could without departing from the scope of the invention consider an alternative embodiment which would associate a reservoir 35 of saturated saline solution such as that of the first or second embodiment with a fluid inlet 36 and a fluid outlet 38 such as those of the third embodiment. In such an alternative embodiment, the reservoir 35 could for example be provided within the support platform 18 or arranged within the enzymatic synthesis apparatus and it would be fluidly connected to the fluid inlet 36 and to the fluid outlet 38 of the cover 22. It is understood here that the fluid circulating from this fluid inlet 36 to this fluid outlet 38 would be the saturated saline solution, the fluid inlet and outlet 36, 38 of the cover 22 then constituting means of communicating the reservoir 35 to the substrate plate 16. According to yet another alternative embodiment, the reservoir 35 of saturated saline solution could be provided in the support platform 18 and include other means of communication with the substrate plate 16, which would then no longer be carried by the lid. Such means of communication could for example take the form of pins which would be lowered when the cover 22 is placed on the support platform 18, these pins otherwise constituting a barrier between the reservoir 35 provided in this support platform 18 and the substrate plate 16 which it carries in its reception zone 20.
Quel que soit le mode de réalisation, le couvercle 22 peut être équipé d’un capteur d’humidité et/ ou d’un capteur de température afin de contrôler le fonctionnement du moyen d’humidification. Whatever the embodiment, the cover 22 can be equipped with a humidity sensor and/or a temperature sensor in order to control the operation of the humidification means.
Le couvercle 22 peut en outre comprendre un élément de chauffage, non représenté ici, qui participe à éviter la formation de condensation au sein du couvercle 22, ce qui risquerait d’entraver les opérations d’imagerie. The cover 22 may also include a heating element, not shown here, which helps to prevent the formation of condensation within the cover 22, which could hinder imaging operations.
Selon l’invention et comme cela est illustré sur les figures 3 à 8, le couvercle 22 est équipé de moyens d’accroche réversible 40 à un bâti 42 d’une station de recouvrement de l’appareil de synthèse enzymatique, ce bâti 42 étant visible en figure 8. Ces moyens d’accroche réversible 40 permettent au couvercle 22 d’être alternativement déposé sur la plateforme de support 18 depuis le bâti 42 et soulevé de cette plateforme de support 18 pour s’arrimer au bâti 42. Le couvercle 22 est plus particulièrement destiné à venir en recouvrement de la plaque de substrat 16 ; on comprend qu’il reposera à cet effet sur la zone de réception 20. Ces moyens d’accroche réversible 40 sont configurés pour coopérer avec des organes d’accroche réversible qui sont eux portés par le bâti et qui seront détaillés plus loin dans la description. According to the invention and as illustrated in Figures 3 to 8, the cover 22 is equipped with reversible attachment means 40 to a frame 42 of a covering station of the enzymatic synthesis apparatus, this frame 42 being visible in Figure 8. These reversible attachment means 40 allow the cover 22 to be alternately placed on the support platform 18 from the frame 42 and lifted from this support platform 18 to attach to the frame 42. The cover 22 is more particularly intended to cover the substrate plate 16; we understand that it will rest for this purpose on the reception zone 20. These reversible attachment means 40 are configured to cooperate with reversible attachment members which are carried by the frame and which will be detailed later in the description .
Selon un mode de réalisation de l’invention, les moyens d’accroche réversible 40 comprennent des aimants parmi lesquels au moins un électroaimant. L’activation et la désactivation des moyens d’accroche réversible se font alors respectivement par l’alimentation électrique de l’électroaimant et la coupure courant au moment opportun. A titre d’exemple d’un mode de fonctionnement de l’invention, l’au moins un électroaimant est alimenté en continu pour que le couvercle soit retenu au bâti 42 et l’alimentation est interrompu lorsque le couvercle doit être relâché pour venir en recouvrement de la plaque de substrat.According to one embodiment of the invention, the reversible attachment means 40 comprise magnets including at least one electromagnet. The activation and deactivation of the reversible attachment means are then done respectively by the electrical supply of the electromagnet and the power cut-off at the appropriate time. As an example of an operating mode of the invention, the at least one electromagnet is powered continuously so that the cover is retained on the frame 42 and the power supply is interrupted when the cover must be released to cover the substrate plate.
Les moyens d’accroche réversible 40 peuvent par ailleurs comprendre au moins un aimant permanent, combinaison de la présence d’au moins un électroaimant et d’au moins un aimant permanent permettant de s’assurer du maintien du couvercle 22 en position sur le bâti 42 même en cas de coupure de l’alimentation électrique nécessaire au fonctionnement de l’électroaimant. Le cas échéant, si suffisamment d’aimant permanent sont prévus, cela peut permettre d’éviter une alimentation en continue de ou des électroaimants pour retenir le couvercle au bâti et cela peut permettre ainsi de limiter la consommation électrique. The reversible attachment means 40 may also comprise at least one permanent magnet, a combination of the presence of at least one electromagnet and at least one permanent magnet making it possible to ensure that the cover 22 is maintained in position on the frame. 42 even in the event of a cut in the electrical supply necessary for the operation of the electromagnet. Where applicable, if sufficient permanent magnets are provided, this may make it possible to avoid a continuous supply of electromagnet(s) to retain the cover to the frame and this may thus make it possible to limit electrical consumption.
Comme cela est particulièrement visible aux figures 3, 5 et 7, les moyens d’accroche réversible 40 sont portés par la paroi supérieure 30 du couvercle 22. Ainsi, les moyens d’accroche réversible 40 sont disposés sur une paroi opposée à la paroi à partir de laquelle s’étend la cavité 34, à savoir la paroi inférieure 32. La paroi supérieure 30 comprend ici quatre électroaimants au titre des moyens d’accroche réversible 40, ces électroaimants étant chacun disposé à un coin de la paroi supérieure 30, c'est-à-dire de part et d’autre de la cavité 34. Une telle disposition des moyens d’accroche réversible 40 permet de s’assurer que la plaque de substrat 16 est correctement recouverte par le couvercle 22, cette plaque de substrat 16 étant entourée par les moyens d’accroche réversible 40.As is particularly visible in Figures 3, 5 and 7, the reversible hooking means 40 are carried by the upper wall 30 of the cover 22. Thus, the reversible hooking means 40 are arranged on a wall opposite the wall to from which the cavity 34 extends, namely the lower wall 32. The upper wall 30 here comprises four electromagnets as reversible attachment means 40, these electromagnets each being arranged at a corner of the upper wall 30, c that is to say on either side of the cavity 34. Such an arrangement of the reversible attachment means 40 makes it possible to ensure that the substrate plate 16 is correctly covered by the cover 22, this substrate plate 16 being surrounded by the reversible attachment means 40.
Alternativement, et bien que non représenté sur les figures, les moyens d’accroche réversible 40 du couvercle 22 au bâti 42 pourraient prendre la forme d’au moins un organe d’aspiration, par exemple une ventouse. Alternatively, and although not shown in the figures, the reversible attachment means 40 of the cover 22 to the frame 42 could take the form of at least one suction member, for example a suction cup.
Tel que cela a été évoqué, les moyens d’accroche réversible 40 sont configurés pour coopérer avec des organes d’accroche réversible 44 du bâti 42 de la station de recouvrement. Ces organes d’accroche réversible 44 sont notamment, si les moyens d’accroche réversible sont des électroaimants et/ ou des aimants permanents, des aimants ou des inserts métalliques. As mentioned, the reversible hooking means 40 are configured to cooperate with reversible hooking members 44 of the frame 42 of the recovery station. These reversible attachment members 44 are in particular, if the reversible attachment means are electromagnets and/or permanent magnets, magnets or metal inserts.
Les moyens d’accroche réversible 40 peuvent être activés ou désactivés, leur désactivation entraînant le détachement du couvercle 22 du bâti 42 de la station de recouvrement, c'est-à-dire la désolidarisation de ces deux éléments, ainsi que le dépôt du couvercle 22 sur la zone de réception 20 de la plateforme de support 18 porteuse de la plaque de substrat 16, tandis que leur activation entraîne un soulèvement du couvercle 22 de la plateforme de support 18 et son accroche réversible au bâti 42. The reversible attachment means 40 can be activated or deactivated, their deactivation leading to the detachment of the cover 22 from the frame 42 of the covering station, that is to say the separation of these two elements, as well as the deposit of the cover 22 on the reception zone 20 of the support platform 18 carrying the substrate plate 16, while their activation causes a lifting of the cover 22 of the support platform 18 and its reversible attachment to the frame 42.
On comprend ainsi que les moyens d’accroche réversible 40 permettent, lorsqu’ils sont activés et désactivés, et que la plateforme de support 18 est en regard du bâti 42, respectivement des déplacements d’attraction et de répulsion du couvercle 22 par rapport au bâti 42. L’attraction permet l’accroche réversible du couvercle 22 sur ce bâti 42, tandis que la répulsion permet son détachement et donc son dépôt sur la zone de réception 20 de la plateforme de support 18. De tels déplacements d’attraction et de répulsion sont, du fait de l’agencement des moyens d’accroche réversible 40, sensiblement perpendiculaires à un plan dans lequel s’étend principalement la plateforme de support 18. It is thus understood that the reversible hooking means 40 allow, when they are activated and deactivated, and the support platform 18 is facing the frame 42, respectively attraction and repulsion movements of the cover 22 relative to the frame 42. The attraction allows the cover 22 to be reversibly attached to this frame 42, while the repulsion allows its detachment and therefore its deposit on the reception zone 20 of the support platform 18. Such movements of attraction and repulsion are, due to the arrangement of the reversible attachment means 40, substantially perpendicular to a plane in which the support platform 18 mainly extends.
Les moyens d’accroche réversible 40 sont activés en fonction d’une position de la plateforme de support 18 et de la plaque de substrat qu’elle porte, et plus précisément de la position de la plaque de substrat par rapport au couvercle retenu sur le bâti. The reversible attachment means 40 are activated as a function of a position of the support platform 18 and of the substrate plate that it carries, and more precisely of the position of the substrate plate relative to the cover retained on the built.
Les moyens d’accroche réversible 40 peuvent être activés à distance, notamment par un programme d’ordinateur approprié, dès lors que le positionnement de la plateforme de support 18 dans une position appropriée est détecté au sein du dispositif d’impression 1. The reversible attachment means 40 can be activated remotely, in particular by an appropriate computer program, as soon as the positioning of the support platform 18 in an appropriate position is detected within the printing device 1.
Afin de s’assurer d’un positionnement optimal du couvercle 22 par rapport à la plaque de substrat 16, le couvercle 22 et/ou la plateforme de support 18 peuvent présenter des moyens de détrompage. Ces moyens de détrompage sont plus précisément portés, pour le couvercle 22, par la paroi inférieure 32. In order to ensure optimal positioning of the cover 22 relative to the substrate plate 16, the cover 22 and/or the support platform 18 may have keying means. These keying means are more precisely carried, for the cover 22, by the lower wall 32.
Par ailleurs, le couvercle 22 peut comporter, tel qu’illustré sur la figure 4 ou la figure 8 notamment, des instruments de fixation réversible 220, qui sont configurés pour coopérer avec des systèmes de fixation réversible 180 agencés sur la plateforme de support 18 pour faciliter l’étape de décrochage au cours de laquelle le couvercle est déposé sur la plateforme de support, en attirant le couvercle vers la plateforme de support, ou au contraire pour faciliter une étape de retour à la position d’origine, au cours de laquelle le couvercle est ramené contre le bâti de la station de recouvrement, en repoussant le couvercle à distance de la plateforme de support. Furthermore, the cover 22 may comprise, as illustrated in Figure 4 or Figure 8 in particular, reversible fixing instruments 220, which are configured to cooperate with reversible fixing systems 180 arranged on the support platform 18 for facilitate the unhooking step during which the cover is placed on the support platform, by attracting the cover towards the support platform, or on the contrary to facilitate a step of returning to the original position, during which the lid is brought back against the cover station frame, pushing the cover away from the support platform.
Un procédé de synthèse enzymatique 46 faisant intervenir l’appareil de synthèse enzymatique tel qu’évoqué précédemment va maintenant être décrit en relation avec la figure 8. Le procédé de synthèse enzymatique 46 selon l’invention comprend plusieurs étapes successives qui forment un cycle permettant la mise en œuvre de la méthode de synthèse décrite auparavant. An enzymatic synthesis process 46 involving the enzymatic synthesis apparatus as mentioned previously will now be described in relation to FIG. 8. The enzymatic synthesis process 46 according to the invention comprises several successive steps which form a cycle allowing the implementation of the synthesis method described previously.
Le procédé de synthèse enzymatique 46 débute par une première étape de positionnement El, au cours de laquelle la plateforme de support 18 est positionnée au sein de la station d’impression de sorte que la zone de réception 20 portant la plaque de substrat 16 soit en regard de la tête d’impression 2, c'est-à-dire dans sa première position. The enzymatic synthesis process 46 begins with a first positioning step El, during which the support platform 18 is positioned within the printing station so that the reception zone 20 carrying the substrate plate 16 is in position. view of the print head 2, that is to say in its first position.
La plaque de substrat 16 est alors positionnée sous les buses de projection 4 portées par cette tête d’impression. Le procédé de synthèse enzymatique 46 se poursuit alors par l’étape d’impression, évoquée précédemment en relation avec la méthode de synthèse enzymatique, qui permet le dépôt d’encre 6 contenant des réactifs de synthèse enzymatique dans les puits de réaction de la plaque de substrat 16 prévus à cet effet. Survient ensuite une deuxième étape de positionnement E2, au cours de laquelle la plateforme de support 18 est déplacée jusqu’à une deuxième position au sein de la station de recouvrement de sorte que la plaque de substrat soit positionnée sous le couvercle 22 qui est accroché au bâti 42 grâce aux moyens d’accroche réversible 40, qui sont à cet effet dans un premier état, par exemple activés, et aux organes d’accroche réversible 44. Le couvercle 22 peut alors être déposé sur la zone de réception 20 de la plateforme de support 18 en recouvrement de la plaque de substrat 16, ce qui constitue une étape de décrochage E3. Une telle étape de décrochage E3 fait notamment intervenir les moyens d’accroche réversible 40 et les organes d’accroche réversible 44, avec au moins les moyens d’accroche réversible qui changent d’état, et sont ici à titre d’exemple désactivés. À son issue, la paroi inférieure du couvercle 22 est au contact de la zone de réception 20 et la plaque de substrat 16 est logée dans la cavité 34 du couvercle 22. Le cas échéant, l’étape de décrochage met également en œuvre les systèmes de fixation réversible 180 et/ou les instruments de fixation réversible 220, pour attirer le couvercle 22 vers la plateforme de support 18. Ceci présente l’avantage d’une part d’assurer une fiabilité du positionnement du couvercle 22 sur la plateforme de support 18 et une rapidité de l’opération de décrochage, en faisant coopérer les systèmes et instruments de fixation, et d’autre part de figer la position du couvercle 22 une fois sur la plateforme de support. The substrate plate 16 is then positioned under the projection nozzles 4 carried by this print head. The enzymatic synthesis process 46 then continues with the printing step, mentioned previously in relation to the enzymatic synthesis method, which allows the deposition of ink 6 containing enzymatic synthesis reagents in the reaction wells of the plate substrate 16 provided for this purpose. Then comes a second positioning step E2, during which the support platform 18 is moved to a second position within the covering station so that the substrate plate is positioned under the cover 22 which is hooked to the frame 42 thanks to the reversible hooking means 40, which are for this purpose in a first state, for example activated, and to the reversible hooking members 44. The cover 22 can then be placed on the reception zone 20 of the platform support 18 overlapping the substrate plate 16, which constitutes a step E3. Such an unhooking step E3 notably involves the reversible hooking means 40 and the reversible hooking members 44, with at least the reversible hooking means which change state, and are here for example deactivated. At its end, the lower wall of the cover 22 is in contact with the reception zone 20 and the substrate plate 16 is housed in the cavity 34 of the cover 22. If necessary, the unhooking step also implements the systems reversible fixing 180 and/or the reversible fixing instruments 220, to attract the cover 22 towards the support platform 18. This has the advantage on the one hand of ensuring reliability of the positioning of the cover 22 on the support platform 18 and speed of the unhooking operation, by making the fixing systems and instruments cooperate, and on the other hand to freeze the position of the cover 22 once on the support platform.
Une fois le couvercle 22 positionné en recouvrement de la plaque de substrat 16, le procédé de synthèse enzymatique 46 se poursuit par une étape d’humidification E4 par l’intermédiaire du moyen d’humidification, ce qui permet d’éviter l’assèchement des gouttes d’encre contenant les réactifs de synthèse qui ont été déposées sur la plaque de substrat 16 au cours de l’étape d’impression. Ainsi, l’étape d’élongation évoquée précédemment en relation avec la méthode de synthèse enzymatique peut se dérouler dans des conditions optimales, l’étape d’humidification E4 pouvant se dérouler pendant toute la durée de l’étape d’incubation de cette méthode de synthèse. Once the cover 22 is positioned to cover the substrate plate 16, the enzymatic synthesis process 46 continues with a humidification step E4 via the humidification means, which makes it possible to avoid drying out of the drops of ink containing the synthesis reagents which were deposited on the substrate plate 16 during the printing step. Thus, the elongation step mentioned previously in relation to the enzymatic synthesis method can take place under optimal conditions, the humidification step E4 being able to take place throughout the duration of the incubation step of this method. of synthesis.
L’étape d’humidification E4 fait intervenir le moyen d’humidification, c'est-à- dire selon les modes de réalisation le réservoir 35 et/ ou l’entrée de fluide 36 et la sortie de fluide 38. Pour les modes de réalisation faisant intervenir le réservoir 35, l’humidification est assurée par diffusion de la solution saline saturée au sein de la cavité 34, et donc autour de la plaque de substrat 16. Pour les modes de réalisation comprenant l’entrée et la sortie de fluide 36, 38, la circulation du fluide humide entre cette entrée de fluide 36 et cette sortie de fluide 38 peut être assurée par l’actionnement de la pompe reliée à la station de nettoyage. The humidification step E4 involves the humidification means, that is to say according to the embodiments the reservoir 35 and/or the fluid inlet 36 and the fluid outlet 38. For the modes of embodiment involving the reservoir 35, humidification is ensured by diffusion of the saturated saline solution within the cavity 34, and therefore around the substrate plate 16. For the embodiments comprising the inlet and outlet of fluid 36, 38, the circulation of the wet fluid between this fluid inlet 36 and this fluid outlet 38 can be ensured by actuation of the pump connected to the cleaning station.
À la suite de l’étape d’humidification E4, la plateforme de support 20 peut être déplacée jusqu’à la station d’imagerie comprenant la caméra 24 pour une étape d’imagerie E5. Une telle étape d’imagerie E5 est facilitée par la transparence d’au moins une paroi du couvercle 22. Des opérations de vérification de l’élongation peuvent alors être effectuées. Following the humidification step E4, the support platform 20 can be moved to the imaging station comprising the camera 24 for an imaging step E5. Such an imaging step E5 is facilitated by the transparency of at least one wall of the cover 22. Operations to verify the elongation can then be carried out.
La plateforme de support 18 peut ensuite revenir dans la station de recouvrement et reprendre la deuxième position précédemment évoquée, pour une étape d’accroche E6, au cours de laquelle le couvercle 22 est soulevé de la zone de réception 20 et accroché au bâti 42 de la station de recouvrement. Une telle étape d’accroche E6 correspond à un changement d’état des moyens d’accroche réversible 40 et/ou des organes d’accroche réversible 44, et elle peut comporter en outre un changement d’état, à savoir une activation ou une désactivation, des systèmes de fixation réversible 180 et des instruments de fixation réversible 220. The support platform 18 can then return to the covering station and resume the second position previously mentioned, for an attachment step E6, during which the cover 22 is lifted from the reception zone 20 and attached to the frame 42 of the recovery station. A such hooking step E6 corresponds to a change of state of the reversible hooking means 40 and/or the reversible hooking members 44, and it may also include a change of state, namely an activation or deactivation , reversible fixation systems 180 and reversible fixation instruments 220.
Une fois le couvercle 22 accroché au bâti 42, la plateforme de support 18 peut être dirigée vers d’autres stations d’opération de l’appareil de synthèse enzymatique, par exemple la station de nettoyage pour une étape de rinçage E7 de la plaque de substrat 16. Un autre cycle du procédé de synthèse enzymatique 46 peut alors débuter en reproduisant la première étape de positionnement El.Once the cover 22 is attached to the frame 42, the support platform 18 can be directed towards other operating stations of the enzymatic synthesis apparatus, for example the cleaning station for a rinsing step E7 of the plate. substrate 16. Another cycle of the enzymatic synthesis process 46 can then begin by reproducing the first positioning step El.
La présente invention propose ainsi un couvercle configuré pour recouvrir un substrat sur lequel a été déposé des gouttes de réactifs de synthèse, permettant ainsi de contrôler un degré d’humidité nécessaire au déroulement de la synthèse, et des moyens permettant une fixation simplifiée et rapide de ce couvercle. The present invention thus proposes a cover configured to cover a substrate on which drops of synthesis reagents have been deposited, thus making it possible to control a degree of humidity necessary for the progress of the synthesis, and means allowing simplified and rapid fixing of this cover.
La présente invention ne saurait toutefois se limiter aux moyens et configurations décrits et illustrés ici et elle s’étend également à tout moyen et toute configuration équivalents ainsi qu’à toute combinaison techniquement opérante de tels moyens. The present invention cannot, however, be limited to the means and configurations described and illustrated here and it also extends to any equivalent means and configuration as well as to any technically effective combination of such means.
Claims
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| FRFR2207173 | 2022-07-12 | ||
| FR2207173 | 2022-07-12 |
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| WO2024013217A1 true WO2024013217A1 (en) | 2024-01-18 |
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| Application Number | Title | Priority Date | Filing Date |
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| PCT/EP2023/069281 Ceased WO2024013217A1 (en) | 2022-07-12 | 2023-07-12 | Cover for a substrate plate of an enzymatic synthesis apparatus |
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| WO (1) | WO2024013217A1 (en) |
Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2021173621A1 (en) * | 2020-02-24 | 2021-09-02 | Miroculus Inc. | Information storage using enzymatic dna synthesis and digital microfluidics |
| WO2021254934A1 (en) * | 2020-06-16 | 2021-12-23 | Dna Script | Systems, apparatus and kits for enzymatic polynucleotide synthesis |
| WO2022013094A1 (en) * | 2020-07-15 | 2022-01-20 | Dna Script | Massively parallel enzymatic synthesis of polynucleotides |
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2023
- 2023-07-12 WO PCT/EP2023/069281 patent/WO2024013217A1/en not_active Ceased
Patent Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2021173621A1 (en) * | 2020-02-24 | 2021-09-02 | Miroculus Inc. | Information storage using enzymatic dna synthesis and digital microfluidics |
| WO2021254934A1 (en) * | 2020-06-16 | 2021-12-23 | Dna Script | Systems, apparatus and kits for enzymatic polynucleotide synthesis |
| WO2022013094A1 (en) * | 2020-07-15 | 2022-01-20 | Dna Script | Massively parallel enzymatic synthesis of polynucleotides |
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