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WO2024094827A1 - Carbonic anhydrase ix ligands for targeted delivery applications - Google Patents

Carbonic anhydrase ix ligands for targeted delivery applications Download PDF

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WO2024094827A1
WO2024094827A1 PCT/EP2023/080619 EP2023080619W WO2024094827A1 WO 2024094827 A1 WO2024094827 A1 WO 2024094827A1 EP 2023080619 W EP2023080619 W EP 2023080619W WO 2024094827 A1 WO2024094827 A1 WO 2024094827A1
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cooh
compound
independently
cancer
alkyl
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Gabriele BASSI
Samuele CAZZAMALLI
Nicholas FAVALLI
Marco Mueller
Sebastian OEHLER
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Philochem AG
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Philochem AG
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Priority to EP23800833.8A priority Critical patent/EP4612144A1/en
Priority to CN202380090188.0A priority patent/CN120390747A/en
Priority to AU2023374710A priority patent/AU2023374710A1/en
Priority to JP2025525246A priority patent/JP2025536589A/en
Publication of WO2024094827A1 publication Critical patent/WO2024094827A1/en
Priority to MX2025005178A priority patent/MX2025005178A/en
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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D409/00Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms
    • C07D409/14Heterocyclic compounds containing two or more hetero rings, at least one ring having sulfur atoms as the only ring hetero atoms containing three or more hetero rings
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K47/00Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
    • A61K47/50Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
    • A61K47/51Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
    • A61K47/54Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
    • A61K47/542Carboxylic acids, e.g. a fatty acid or an amino acid
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K47/00Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
    • A61K47/50Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
    • A61K47/51Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
    • A61K47/54Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
    • A61K47/545Heterocyclic compounds
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K47/00Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient
    • A61K47/50Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates
    • A61K47/51Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent
    • A61K47/54Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound
    • A61K47/55Medicinal preparations characterised by the non-active ingredients used, e.g. carriers or inert additives; Targeting or modifying agents chemically bound to the active ingredient the non-active ingredient being chemically bound to the active ingredient, e.g. polymer-drug conjugates the non-active ingredient being a modifying agent the modifying agent being an organic compound the modifying agent being also a pharmacologically or therapeutically active agent, i.e. the entire conjugate being a codrug, i.e. a dimer, oligomer or polymer of pharmacologically or therapeutically active compounds
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K49/00Preparations for testing in vivo
    • A61K49/001Preparation for luminescence or biological staining
    • A61K49/0013Luminescence
    • A61K49/0017Fluorescence in vivo
    • A61K49/005Fluorescence in vivo characterised by the carrier molecule carrying the fluorescent agent
    • A61K49/0052Small organic molecules
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    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K51/00Preparations containing radioactive substances for use in therapy or testing in vivo
    • A61K51/02Preparations containing radioactive substances for use in therapy or testing in vivo characterised by the carrier, i.e. characterised by the agent or material covalently linked or complexing the radioactive nucleus
    • A61K51/04Organic compounds
    • A61K51/0404Lipids, e.g. triglycerides; Polycationic carriers
    • A61K51/0406Amines, polyamines, e.g. spermine, spermidine, amino acids, (bis)guanidines
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K51/00Preparations containing radioactive substances for use in therapy or testing in vivo
    • A61K51/02Preparations containing radioactive substances for use in therapy or testing in vivo characterised by the carrier, i.e. characterised by the agent or material covalently linked or complexing the radioactive nucleus
    • A61K51/04Organic compounds
    • A61K51/041Heterocyclic compounds
    • A61K51/0429Heterocyclic compounds having sulfur as a ring hetero atom
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K51/00Preparations containing radioactive substances for use in therapy or testing in vivo
    • A61K51/02Preparations containing radioactive substances for use in therapy or testing in vivo characterised by the carrier, i.e. characterised by the agent or material covalently linked or complexing the radioactive nucleus
    • A61K51/04Organic compounds
    • A61K51/0497Organic compounds conjugates with a carrier being an organic compounds
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
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    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D413/00Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
    • C07D413/14Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing three or more hetero rings
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D493/00Heterocyclic compounds containing oxygen atoms as the only ring hetero atoms in the condensed system
    • C07D493/02Heterocyclic compounds containing oxygen atoms as the only ring hetero atoms in the condensed system in which the condensed system contains two hetero rings
    • C07D493/10Spiro-condensed systems
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K7/00Peptides having 5 to 20 amino acids in a fully defined sequence; Derivatives thereof
    • C07K7/04Linear peptides containing only normal peptide links
    • C07K7/06Linear peptides containing only normal peptide links having 5 to 11 amino acids

Definitions

  • the present invention relates to protein ligands against Carbonic Anhydrase IX (CAIX) as target of biomedical relevance.
  • the highly specific ligands may be able to exclusively interact with antigens expressed on the surface of tumor cells, namely, CAIX, sparing anti-target expressing healthy organs, thus enabling efficient in vivo pharmaco-delivery applications.
  • the ligands may exhibit a particularly low dissociation constant and/or enzyme isoform specificity, and may be suitable for targeted delivery of a payload, such as a therapeutic and/or diagnostic agent, to a site afflicted by or at risk of disease or disorder characterized by expression of CAIX.
  • CAIX Carbonic anhydrase IX
  • RRC Renal Cell Carcinoma
  • CAIX-targeting antibodies i.e., Girentuximab
  • urothelial cancer NCT05046665
  • renal cell carcinoma NCT02883153
  • NCT02497599 NCT03849118
  • nivolumab for the treatment of kidney cancer
  • CAIX ligands undergo clinical development as imaging or therapeutic agents (monotherapy or in combination with other therapeutic modalities) against various types of malignancies.
  • Acetazolamide for example, has been tested in combination with platinum against localized small cell lung cancer (NCT03467360) and with temozolomide against malignant glioma (NCT03011671).
  • SLC-0111 is investigated as monotherapy against solid tumors (NCT02215850) or in combination with gemicitabine for metastatic pancreatic ductal cancer (NCT03450018).
  • DTP348 has been tested as radiosensitizer for solid tumors (NCT02216669).
  • E7070 has been investigated for the treatment of gastric cancer (NCTO0165594), metastatic breast cancer (NCT00080197), solid tumors (NCT00003976, NCT00003981), renal cell carcinoma (NCT00059735), stage IV melanoma (NCT00014625) and as combination treatment for metastatic breast cancer (NCT00165880) and metastatic colorectal ccaanncceerr (NCT00165867, NCT00165854).
  • [F-18JVM4-037 was applied as imaging agent for different cancers (NCT00884520).
  • COX-2 inhibitor celecoxib has also been investigated in the background of CAIX inhibition to treat cervical intraepithelial neoplasia (NCT00081263), alongside radiation and surgery for advanced head and neck cancer (NCT04162873) and in combination with immunomodulators or chemotherapy against colorectal cancer (NCT01729923), colorectal cancer metastatic to the liver (NCT03403634) and early stage triple negative breast cancer (NCT04081389).
  • CA Carbonic Anhydrases
  • Sulfonamides are a well-known class of carbonic anhydrase inhibitors.
  • Sulfonamides with high affinity towards CAIX e.g., acetazolamide
  • SMDCs Small Molecule-Drug Conjugates
  • Sulfonamides typically coordinate to the zinc ion within the highly conserved active site of CAs.
  • Sulfonamide-based CA-binders are therefore pan-isotype CA ligands and inhibitors, with only few selective candidates all of which remain cross-reactive with one or more isotypes.
  • Due to expression of CAs in healthy tissues there is a need to identify specific CAIX ligands to further improve targeted delivery of diagnostic or therapeutic agents to the site of disease, e.g., by providing high-affinity ligands allowing low dosage, and/or by reducing off-target toxicity.
  • the present invention aims at the problem of providing improved binders (ligands) of a target enzyme, namely, CAIX, suitable for targeting applications.
  • the binders should be suitable for binding to or inhibition of the target enzyme, and/or targeted delivery of a payload, such as a therapeutic and/or diagnostic agent, to a site afflicted by or at risk of disease or disorder characterized by expression of CAIX.
  • FIG. 1 shows LC-MS chromatogram and mass spectrum of intermediate 11. m/z calculated for C 31 H 39 CI 3 N 7 O 1 1 S 2 [M+H] + : 854.1209.
  • FIG. 2 shows LC-MS chromatogram and mass spectrum of intermediate 12. m/z calculated for C 31 H 39 CI 3 N 7 O 1 1 S 2 [M+H] + : 854.1209.
  • FIG. 3 shows LC-MS chromatogram and mass spectrum of intermediate I3. m/z calculated for C 31 H 39 CI 3 N 7 O 1 1 S 2 [M+H] + : 854.1209.
  • FIG. 4 shows LC-MS chromatogram and mass spectrum of intermediate I4, also referred to as compound C9. m/z calculated for C 31 H 39 CI 3 N 7 O 1 1 S 2 [M+H] + : 854.1209.
  • FIG. 5 shows LC-MS chromatogram and mass spectrum of intermediate 15. m/z calculated for C 19 H 31 N 8 O 10 S 2 [M+H] + : 595.1599.
  • FIG. 6 shows LC-MS chromatogram and mass spectrum of intermediate 16. m/z calculated for
  • FIG. 7 shows LC-MS chromatogram and mass spectrum of intermediate I7. m/z calculated for C 18 H 17 CI 3 N 3 O 6 S 2 [M+H] + : 539.9619.
  • FIG. 8 shows LC-MS chromatogram and mass spectrum of intermediate I8. m/z calculated for C 12 H 15 CIN 3 O 6 S 2 [M+H] + : 396.0085.
  • FIG. 9 shows LC-MS chromatogram and mass spectrum of intermediate I9. m/z calculated for C 15 H 17 CI 2 N 2 O 4 [M+H] + : 359.0560.
  • FIG. 10 shows LC-MS chromatogram and mass spectrum of intermediate 110. m/z calculated for C 27 H 28 N 3 O 7 S [M+H] + : 538.1642.
  • FIG. 11 shows LC-MS chromatogram and mass spectrum of compound 01. m/z calculated for C 52 H 49 CI 3 N 7 O 17 S 2 [M+H] + : 1212.1686.
  • FIG. 12 shows LC-MS chromatogram and mass spectrum of compound 03. m/z calculated for C 52 H 49 CI 3 N 7 O 17 S 2 [M+H] + : 1212.1686.
  • FIG. 13 shows LC-MS chromatogram and mass spectrum of compound C5. m/z calculated for C 52 H 49 CI 3 N 7 O 17 S 2 [M+H] + : 1212.1686.
  • FIG. 14 shows LC-MS chromatogram and mass spectrum of compound 07. m/z calculated for C 52 H 49 CI 3 N 7 O 17 S 2 [M+H] + : 1212.1686.
  • FIG. 15 shows mass spectrum of compound C2. m/z calculated for C 80 H 97 CI 3 N 9 O 24 S 6 [M+H] + :
  • FIG. 16 shows mass spectrum of compound C4. m/z calculated for C 80 H 97 CI 3 N 9 O 24 S 6 [M+H] + :
  • FIG. 17 shows mass spectrum of compound C6. m/z calculated for C 80 H 97 CI 3 N 9 O 24 S 6 [M+H] + :
  • FIG. 18 shows mass spectrum of C10. m/z calculated for C 80 H 97 CI 3 N 9 O 24 S 6 [M+H] + : 1864.4031 .
  • FIG. 19 shows LC-MS chromatogram and mass spectrum of compound 08. m/z calculated for C 45 H 42 CI 3 N 6 O 12 S 3 [M+H] + : 1059.1083.
  • FIG. 20 shows LC-MS chromatogram and mass spectrum of compound C12. m/z calculated for C 39 H 40 CIN 6 O 12 S 3 [M+H] + : 915.1549.
  • FIG. 21 shows LC-MS chromatogram and mass spectrum of compound C13. m/z calculated for C4 2 H 42 Cl 2 N 5 O 10 S [M+H] + : 878.2024.
  • FIG. 22 shows LC-MS chromatogram and mass spectrum of compound C11. m/z calculated for c 50 H 69 Cl 3 N 11°20 s 2 [M+H] + : 1312.3222.
  • FIG. 23 shows HPLC chromatogram of [ 177 Lu]LuCl 3 (A) and [ 177 Lu]Lu- C11 (B). The signal was recorded with a radio-detector.
  • FIG. 24 shows LC-MS chromatogram and mass spectrum of compound C14. m/z calculated for C 32 H 30 CIN 4 O 10 S 3 [M+H] + : 761.0807.
  • FIG. 25 shows LC-MS chromatogram and mass spectrum of compound C15. m/z calculated for c 40 H 42 N 9 O 15 S 3 [M+H] + : 984.1957.
  • FIG. 26 shows affinity measurement of compounds C1, C3, C5, C7, C8, C12, C13 and C14 by fluorescence polarization (FP) against CAIX. Error bars indicate the standard deviation of three replicates.
  • FIG. 27 shows affinity measurements of compound C7 and AAZ* by fluorescence polarization against CAIX and respective isozymes. Error bars indicate the standard deviation of three replicates.
  • FIG. 28 shows I VIS imaging of SKRC-52 tumor bearing Balb/c nude mice 4 hours post intravenous injection with compound C10, 02, C4 and 06 (left to right).
  • the SKRC-52 tumor area is indicated with a white circle. Selective targeting was observed for compound 010 while no preferential accumulation at the tumor sites was observed for the other stereoisomers.
  • FIG. 30 shows binder selections against Carbonic Anhydrase IX (CAIX), a marker of hypoxia and of renal cell carcinoma.
  • A Chemical structures of compounds C1 to C14.
  • B Chemical structures of L1 to L10.
  • C Evaluation of compound C9 binding capacity by surface plasmon resonance (SPR) against CAIX (left panel) and CAI I (right panel).
  • SPR surface plasmon resonance
  • Compound C9 was immobilized on a CM5 chip (at 963 RUs) and subjected to a serial dilution of the respective protein (16.6 ⁇ M to 1.1 ⁇ M).
  • E Flow cytometry analysis of SK-RC-52 tumor cells treated with compounds C1, C3, C5, C7 in comparison to the non-stained control (cells alone).
  • hCAIX human carbonic anhydrase IX
  • RSA rat serum albumin
  • HSA human serum albumin
  • CSA cynomolgus monkey serum albumin
  • MSA mouse serum albumin
  • Rabbit SA rabbit serum albumin
  • BSA bovine serum albumin
  • OVA ovalbumin
  • Hgb haemoglobin
  • AGP alpha(1)-acid glycoprotein
  • hlgG4 human immunoglobulin G4
  • CD cluster of differentiation
  • NKp46 natural killer cell p46-related protein
  • NKG2D natural killer group 2D
  • IL-9/-15Z-23 interleukin 9/15/23
  • LZM lysozyme
  • WDR5 WD repeat-containing protein 5
  • CREBBP CREB-binding protein
  • TEAD TEA domain family member 1
  • CTSB cathepsin B
  • TCPTP T-cell protein tyrosine phosphatase
  • TN T-cell protein
  • FIG. 32 shows Fluorescence polarization measurements of compound C7 against serum proteins (A), immune-targets (B) and non-related protein targets (C) for selectivity profiling. Measurements were performed in triplicates.
  • FIG. 33 shows affinity measurements of compounds C16, C17 and C18 by fluorescence polarization against hCAIX (A) and the isozymes bCAII (B), showing that similar affinity towards CAIX and selectivity over CAI I is achieved with these compounds (C).
  • FIG. 34 shows FP measurements of C19-C23 against CAIX. Error bars indicate the standard deviation of three replicates.
  • FIG. 35 shows FP measurements of I-387, C8, C19 and I-383.
  • the assay was performed at 5 nM final ligand concentration. Error bars indicate the standard deviation of three replicates.
  • the present invention relates to potent, stereospecific ligands of, inter alia, CAIX, with a particularly low dissociation constant (e.g., in the nanomolar range).
  • the ligands of the invention can be applied as selective inhibitor or targeting agents to disease-relevant tissue, e.g., associated with CAIX expression.
  • the ligands of the invention can be suitably conjugated with various therapeutic and/or diagnostic payloads, including, e.g., fluorophores, radiometal chelators, cytotoxic agents, immunomodulatory agents and therapeutic proteins.
  • the binders provided herein can have pharmaceutical potential. For instance, selective CAIX binders are provided herein which do not react with other carbonic anhydrases. Traditionally, it has been difficult to isolate sulfonamides with high isoform-selectivity against carbonic anhydrases.
  • derivatives provided herein can display more than 100-fold selectivity for CAIX over other carbonic anhydrases, selectively localized to tumors in vivo, as confirmed by the results, e.g. in FIG. 27 and FIG. 28.
  • AAZ* bound to all tested carbonic anhydrases with high affinity (bovine CAII, human CAIV, human CAXII and human CAXIV).
  • the present invention provides CAIX ligands with surprisingly high isozyme selectivity.
  • CAIX-specific targeting agents may facilitate the delivery of cytotoxic agents, and may be used as adaptor for universal CAR-T cell conditioning therapy.
  • Derivatives described herein can exhibit surprising synergistic affinity enhancement. This is confirmed by the results presented herein, e.g., in FIG. 26.
  • the 2-(2,4-dichlorophenyl)acetic acid proline derivative (compound C13) did not bind to CAIX.
  • Derivatives described therein can also exhibit highly stereoselective binding. Only one of the four possible stereoisomers revealed strong binding of the ligand to CAIX. Thus, herein provided are well-defined, potent ligands with surprisingly high binding affinity. The high stereospecificity translated to high isozyme selectivity to CAIX over other carbonic anhydrases (bovine CAII, human CAIV, human CAXII and human CAXIV). We compared the CAIX ligand of the invention to a fluorescent acetazolamide derivative (AAZ*), which is one of the most prominent CAIX binders applied for targeted therapy. This is confirmed by the results presented herein.
  • AAZ* fluorescent acetazolamide derivative
  • FIG. 34 shows that incorporation of a 5-amino-1,3,4- thiadiazole-2-sulfonamide derivative in the ligands led to further increase of affinity towards CAIX.
  • FIG. 35 shows that the CAIX binding affinity of the ligands is substantially maintained irrespective of variations in the linker B.
  • an antibody e.g., a therapeutically and/or diagnostically useful protein
  • a protein e.g., a therapeutically and/or diagnostically useful protein
  • C’-S- denotes a thiolyl group on a side chain of an amino acid forming part of the protein.
  • the surprising technical effects related to target binding to are associated with the particular structure of the small binding moieties A. That is, an improvement for compounds comprising moiety A over a corresponding compound not having such moiety is expected to be observed.
  • the compounds of the present invention can have an increased affinity, slower dissociation rate with respect to the target(s) as compared to prior art compounds, and therefore are also considered to as having a prolonged residence at the disease site at a therapeutically or diagnostically relevant level, preferably beyond 1 h, more preferably beyond 6 h post injection.
  • the highest enrichment is achieved after
  • Moiety A is represented by the following structure: wherein R 1 , R 2 , R, a and b are as defined elsewhere herein. Groups particularly suitable as R 1 and/or R 2 are provided in the below Table 4. Table 4. Overview of building blocks suitable as R 1 and/or R 2 and the respective codes (A.../B%) as used in the Examples section.
  • a particularly preferred structure of moiety A exhibiting very high target selectivity, stereospecificity and binding affinity for CAIX is:
  • Moiety B is a covalent bond or a moiety comprising a chain of atoms that covalently attaches A to the payload C, e.g., through one or more covalent bond(s).
  • the moiety B may be cleavable or non-cleavable, multifunctional moiety which can be used to link one or more payload and/or binder moieties to form the targeted conjugate of the invention.
  • moiety B is a multifunctional moiety linking one or more moieties C and/or moieties A.
  • B can be a single bond, or an optionally substituted C 1 -50 aliphatic group, In which optionally one or more carbon atoms can be replaced by a heteroatom, a C 3-12 carbocyclic or a C 1- 12 heterocyclic group, and which can be saturated optionally contain one or more double or triple bonds.
  • the structure of the compound comprises more than one, preferably 2 or 3 moieties A per molecule.
  • the structure of the compound may comprise more than one moieties C, preferably 2 or 3 moieties C per molecule.
  • the structure of the compound comprises 2 moleties A and 1 moiety C, or 2 moieties A and 1 moiety C per molecule.
  • Moiety B can comprise or consist of a unit shown in Table 5 below wherein the substituents R and R n shown in the formulae may suitably be independently selected from H, halogen, substituted or unsubstituted (hetero)alkyl, (hetero)alkenyl, (hetero)alkynyl, (hetero)aryl, (hetero)arylalkyl, (hetero)cycloalkyl, (hetero)cycloalkylaryl, heterocyclylalkyl, a peptide, an oligosaccharide or a steroid group.
  • substituents R and R n shown in the formulae may suitably be independently selected from H, halogen, substituted or unsubstituted (hetero)alkyl, (hetero)alkenyl, (hetero)alkynyl, (hetero)aryl, (hetero)arylalkyl, (hetero)cycloalkyl, (
  • each of R, R 1 , R 2 and R 3 is independently selected from H, OH, SH, NH2, halogen, cyano, carboxy, alkyl, cycloalkyl, aryl and heteroaryl, each of which is substituted or unsubstituted.
  • R and R n are independently selected from H, or C1-C7 alkyl or heteroalkyl. More suitably, R and R n are independently selected from H, methyl or ethyl. Table 5
  • Moiety B, unit(s) B L and/or unit(s) B S may suitably comprise as a cleavable bond a disulfide linkage since these linkages are stable to hydrolysis, while giving suitable drug release kinetics at the target in vivo, and can provide traceless cleavage of drug moieties including a thiol group.
  • Moiety B, unit(s) B L and/or unit(s) B S may be polar or charged in order to improve water solubility of the conjugate.
  • the linker may comprise from about 1 to about 20, suitably from about 2 to about 10, residues of one or more known water-soluble oligomers such as peptides, oligosaccharides, glycosaminoglycans, polyacrylic acid or salts thereof, polyethylene glycol, polyhydroxyethyl (meth) acrylates, polysulfonates, etc.
  • the linker may comprise a polar or charged peptide moiety comprising e.g. from 2 to 10 amino acid residues.
  • Amino acids may refer to any natural or non-natural amino acid.
  • the peptide linker suitably includes a free thiol group, preferably a N-terminal cysteine, for forming the said cleavable disulfide linkage with a thiol group on the drug moiety.
  • a free thiol group preferably a N-terminal cysteine
  • Any peptide containing L- or D-aminoacids can be suitable; particularly suitable peptide linkers of this type are Asp-Arg-Asp-Cys and/or Asp-Lys-Asp-Cys.
  • moiety B, unit(s) B L and/or unit(s) B S may comprise a cleavable or non- cleavable peptide unit that is specifically tailored so that it will be selectively enzymatically cleaved from the drug moiety by one or more proteases on the cell surface or the extracellular regions of the target tissue.
  • the amino acid residue chain length of the peptide unit suitably ranges from that of a single amino acid to about eight amino acid residues.
  • Numerous specific cleavable peptide sequences suitable for use in the present invention can be designed and optimized in their selectivity for enzymatic cleavage by a particular tumor-associated enzyme e.g. a protease.
  • Cleavable peptides for use in the present invention include those which are optimized toward the proteases MMP-1 , 2 or 3, or cathepsin B, C or D. Especially suitable are peptides cleavable by Cathepsin B.
  • Cathepsin B is a ubiquitous cysteine protease. It is an intracellular enzyme, except in pathological conditions, such as metastatic tumors or rheumatoid arthritis.
  • An example for a peptide cleavable by Cathepsin B is containing the sequence Val-Cit.
  • the moiety B and in particular, unit(s) B L suitably further comprise(s) self-immolative moiety can or cannot be present after the linker.
  • the self-immolative linkers are also known as electronic cascade linkers. These linkers undergo elimination and fragmentation upon enzymatic cleavage of the peptide to release the drug in active, preferably free form.
  • the conjugate is stable extracellularly in the absence of an enzyme capable of cleaving the linker.
  • the linker upon exposure to a suitable enzyme, the linker is cleaved initiating a spontaneous self-immolative reaction resulting in the cleavage of the bond covalently linking the self-immolative moiety to the drug, to thereby effect release of the drug in its underivatized or pharmacologically active form.
  • the self-immolative linker is coupled to the binding moiety through an enzymatically cleavable peptide sequence that provides a substrate for an enzyme to cleave the amide bond to initiate the self-immolative reaction.
  • the drug moiety is connected to the self-immolative moiety of the linker via a chemically reactive functional group pending from the drug such as a primary or secondary amine, hydroxyl, sulfhydryl or carboxyl group.
  • PABC self-immolative linkers
  • PAB para-aminobenzyloxycarbonyl
  • the amide bond linking the carboxy terminus of a peptide unit and the para-aminobenzyl of PAB may be a substrate and cleavable by certain proteases.
  • the linker comprises a glucuronyl group that is cleavable by glucoronidase present on the cell surface or the extracellular region of the target tissue. It has been shown that lysosomal beta-glucuronidase is liberated extracellularly in high local concentrations in necrotic areas in human cancers, and that this provides a route to targeted chemotherapy (Bosslet, K. et al. Cancer Res. 58, 1195- 1201 (1998)).
  • the moiety B suitably further comprises a spacer unit.
  • a spacer unit can be the unit B S , which may be linked to the binding moiety A, for example via an amide, amine or thioether bond.
  • the spacer unit is of a length that enables e.g. the cleavable peptide sequence to be contacted by the cleaving enzyme (e. g. cathepsin B) and suitably also the hydrolysis of the amide bond coupling the cleavable peptide to the self-immolative moiety X.
  • Spacer units may for example comprise a divalent radical such as alkylene, arylene, a heteroarylene, repeating units of alkyloxy (e.g.
  • polyethylenoxy PEG, polymethyleneoxy
  • alkylamino e.g. polyethyleneamino
  • diacid ester and amides including succinate, succinamide, diglycolate, malonate, and caproamide.
  • * represents a point of attachment to moiety A or a point of attachment for which the shortest path to moiety A comprises less atoms than that for •, as the case may be; and • represents a point of attachment a point of attachment to moiety C or a point of attachment to moiety C for which the shortest path to moiety C comprises less atoms than that for *, as the case may be.
  • a reactive moiety L is present rather than payload moiety C.
  • each * represents a point of attachment for which the shortest path to moiety A comprises less atoms than that for •; and each • represents a point of attachment for which the shortest path to moiety C comprises less atoms than that for *, with the proviso that when n is > 1 and a respective point of attachment is indicated on any one of R a , R b and R c , then it can be independently present in one or more of the peptide monomeric units, preferably in one peptide monomeric unit most distant from the other point of attachment indicated in the respective structure.
  • the terms “peptide”, “dipeptide”, “tripeptide”, “tetrapeptide” etc. refer to peptide mono- or oligomers having a backbone formed by proteinogenic and/or a non- proteinogenic amino acids.
  • aminoacyl or “aminoacid” generally refer to any proteinogenic or a non-proteinogenic amino acid.
  • the side-chain residues of a proteinogenic or a non-proteinogenic amino acid are represented by any of R a , R b and R c , each of which is selected from the following list:
  • each of R, R 1 R 2 and R 3 is independently selected from H, OH, SH, NH 2 , halogen, cyano, carboxy, alkyl, cycloalkyl, aryl and heteroaryl, each of which is substituted or unsubstituted; each X is independently selected from NH, NR, S, O and CH 2 , preferably NH; and each n and m is independently an integer preferably selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, W and 20.
  • side-chain residues of a proteinogenic or a non- proteinogenic amino acid are represented by any of R a , R b , R c , R d and R e , each of which may be part of a 3-, 4-, 5-, 6- or 7-membered ring.
  • the side chain alpha, beta and/or gamma position of said proteinogenic or non-proteinogenic amino acid can be part of a cyclic structure selected from an azetidine ring, pyrrolidine ring and a piperidine ring, such as in the following aminoacids (proline and hydroxyproline): each of which may independently be part of an unsaturated structure (i.e. wherein the H atom geminal to the respective group R a , R b and R c is absent), e.g.:
  • peptide sequences refers to a sequence from N to C terminus, and attachment of group through a horizontal bond (here: moiety C) means covalent attachment to the peptide backbone via amide bond to the respective terminal amino acid (here: AA3):
  • moiety C means covalent attachment to the peptide backbone via amide bond to the respective terminal amino acid (here: AA3):
  • moiety C means covalent attachment via the sidechain of the respective amino acid (here: AA 3 ):
  • non-proteinogenic amino acids can be selected from the following list:
  • Moiety C in the present invention represents a payload, which can be generally any atom (including H), molecule or particle.
  • moiety C is not a hydrogen atom.
  • the payload may be a chelator for radiolabeling.
  • the radionuclide is not released.
  • Chelators are well known to those skilled in the art, and for example, include chelators such as sulfur colloid, diethylenetriaminepentaacetic acid (DTPA), ethylenediaminetetraacetic acid (EDTA), 1,4,7,10- tetraazacyclododecane-N,N',N",N” , -tetraacetic acid (DOTA), 1 ,4,7,10-tetraazacyclododececane,N- (glutaric acid)-N',N",N"'-triacetic acid (DOTAGA), 1,4,7-triazacyclononane-N,N',N"-triacetic acid (NOTA), 1 ,4,8,11-tetraazacyclotetradecane-N,N',N",N” , -tetraacetic acid (TETA), or any of the preferred chelator
  • the payload may be a radioactive group comprising or consisting of radioisotope including isotopes such as , preferably, positron emitters, such as 18 F and 124 I or gamma emitters, such as are usec
  • the radioisotope is In a further preferred embodiment the radioisotope is 68 Ga.
  • the payload may be a chelate of a radioactive isotope, preferably of an isotope listed under above, with a chelating agent, preferably a chelating agent listed herein.
  • the payload may be a fluorophore group, preferably selected from a xanthene dye, acridine dye, oxazine dye, cyanine dye, styryl dye, coumarine dye, porphine dye, fluorescent metal-ligand-complex, fluorescent protein, nanocrystals, perylene dye, boron-dipyrromethene dye and phtalocyanine dye, more preferably selected from the structures listed herein.
  • the payload may be a cytotoxic and/or cytostatic agent.
  • cytotoxic agents can inhibit or prevent the function of cells and/or cause destruction of cells.
  • cytotoxic agents include radioactive isotopes, chemotherapeutic agents, and toxins such as small molecule toxins or enzymatically active toxins of bacterial, fungal, plant or animal origin, including synthetic analogues and derivatives thereof.
  • the cytotoxic agent may be selected from the group consisting of an auristatin, a DNA minor groove binding agent, a DNA minor groove alkylating agent, an enediyne, a lexitropsin, a duocarmycin, a taxane, a puromycin, a dolastatin, a maytansinoid and a vinca alkaloid or a combination of two or more thereof.
  • Preferred cytotoxic and/or cytostatic payload moieties are listed herein.
  • the payload is a chemotherapeutic agent selected from the group consisting of a topoisomerase inhibitor, an alkylating agent (e.g., nitrogen mustards; ethylenimes; alkylsulfonates; triazenes; piperazines; and nitrosureas), an antimetabolite (e.g., mercaptopurine, thioguanine, 5- fluorouracil), an antibiotics (e.g., anthracyclines, dactinomycin, bleomycin, adriamycin, mithramycin.
  • a chemotherapeutic agent selected from the group consisting of a topoisomerase inhibitor, an alkylating agent (e.g., nitrogen mustards; ethylenimes; alkylsulfonates; triazenes; piperazines; and nitrosureas), an antimetabolite (e.g., mercaptopurine, thioguanine, 5- fluor
  • dactinomycin a mitotic disrupter (e.g., plant alkaloids - such as vincristine and/or microtubule antagonists -such as paclitaxel), a DNA methylating agent, a DNA intercalating agent (e.g., carboplatin and/or cisplatin, daunomycin and/or doxorubicin and/or bleomycin and/or thalidomide), a DNA synthesis inhibitor, a DNA- RNA transcription regulator, an enzyme inhibitor, a gene regulator, a hormone response modifier, a hypoxia-selective cytotoxin (e.g., tirapazamine), an epidermal growth factor inhibitor, an anti-vascular agent (e.g., xanthenone 5,6-dimethylxanthenone-4-acetic acid), a radiation-activated prodrug (e.g., nitroarylmethyl quaternary (NMQ) salts) or a bioreductive drug or a combination of two or more
  • the chemotherapeutic agent may selected from the group consisting of Erlotinib (TARCEVA®), Bortezomib (VELCADE®), Fulvestrant (FASLODEX®), Sutent (SU11248), Letrozole (FEMARA®), Imatinib mesylate (GLEEVEC®), PTK787/ZK 222584, Oxaliplatin (Eloxatin®.), 5-FU (5-fluorouracil), Leucovorin, Rapamycin (Sirolimus, RAPAMUNE®.), Lapatinib (GSK572016), Lonafarnib (SCH 66336), Sorafenib (BAY43-9006), and Gefitinib (IRESSA®.), AG1478, AG1571 (SU 5271 ; Sugen) or a combination of two or more thereof.
  • TARCEVA® Erlotinib
  • VELCADE® Bortezomib
  • FASLODEX® Fulvestrant
  • the chemotherapeutic agent may be an alkylating agent - such as thiotepa, CYTOXAN® and/or cyclosphosphamide; an alkyl sulfonate - such as busulfan, improsulfan and/or piposulfan; an aziridine - such as benzodopa, carboquone, meturedopa and/or uredopa; ethylenimines and/or methylamelamines - such as altretamine, triethylenemelamine, triethylenepbosphoramide, triethylenethiophosphoramide and/or trimethylomelamine; acetogenin - such as bullatacin and/or bullatacinone; camptothecin; bryostatin; callystatin; cryptophycins; dolastatin; duocarmycin; eleutherobin; pancratistatin; sarcodictyin; spongistatin; nitrogen mustards
  • doxorubicin - such as morpholinodoxorubicin, cyanomorpholino-doxorubicin, 2-pyrrolino-doxorubicin and/or deoxydoxorubicin, epirubicin, esorubicin, idarubicin, marcellomycin, mitomycins - such as mitomycin C, mycophenolic acid, nogalamycin, olivomycins, peplomycin, potfiromycin, puromycin, quelamycin, rodorubicin, streptonigrin, streptozocin, tubercidin, ubenimex, zinostatin, zorubicin; anti-metabolites - such as methotrexate and 5-fluorouracil (5- FU); folic acid analogues - such as denopterin, methotrexate, pteropterin, trimetrexate; purine analogues - such as fludarablne, 6-mercaptopurine, thiamlprin
  • paclitaxel paclitaxel, abraxane, and/or TAXOTERE®, doxetaxel; chloranbucil; GEMZAR®.
  • gemcitabine 6-thioguanine; mercaptopurine; methotrexate; platinum analogues - such as cisplatin and carboplatin; vinblastine; platinum; etoposide; ifosfamide; mitoxantrone; vincristine; NAVELBINE®, vinorelbine; novantrone; teniposide; edatrexate; daunomycin; aminopterin; xeloda; ibandronate; topoisomerase inhibitor RFS 2000; difluoromethylomithine (DMFO); retinoids - such as retinoic acid; capecitabine; and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above.
  • platinum analogues - such as
  • the payload may be a tubulin disruptor including but are not limited to: taxanes - such as paclitaxel and docetaxel, vinca alkaloids, dlscodermolide, epothilones A and B, desoxyepothilone, cryptophycins, curacin A, combretastatin A-4-phosphate, BMS 247550, BMS 184476, BMS 188791 ; LEP, RPR 109881 A, EPO 906, TXD 258, ZD 6126, vinflunine, LU 103793, dolastatin 10, E7010, T138067 and T900607, colchicine, phenstatin, chaicones, indanocine, T138067, oncocidin, vincristine, vinblastine, vinorelbine, vinflunine, halichondrin B, isohomohalichondrin B, ER-86526, pironetin, spongistatin 1 , spike
  • the payload may be a DNA intercalator including but are not limited to: acridines, actinomycins, anthracyclines, benzothiopyranoindazoles, pixantrone, crisnatol, brostallicin, CI-958, doxorubicin (adriamycin), actinomycin D, daunorubicin (daunomycin), bleomycin, idarubicin, mitoxantrone, cyclophosphamide, melphalan, mitomycin C, bizelesin, etoposide, mitoxantrone, SN-38, carboplatin, cis- acceptable salts, acids, derivatives or combinations of two or more of any of the above.
  • a DNA intercalator including but are not limited to: acridines, actinomycins, anthracyclines, benzothiopyranoindazoles, pixantrone, crisnatol
  • the payload may be an anti-hormonal agent that acts to regulate or inhibit hormone action on tumors - such as anti-estrogens and selective estrogen receptor modulators, Including, but not limited to, tamoxifen, raloxifene, droloxifene, 4-hydroxytamoxifen, trioxifene, keoxifene, LY117018, onapristone, and/or fareston toremifene and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above.
  • an anti-hormonal agent that acts to regulate or inhibit hormone action on tumors - such as anti-estrogens and selective estrogen receptor modulators, Including, but not limited to, tamoxifen, raloxifene, droloxifene, 4-hydroxytamoxifen, trioxifene, keoxifene, LY117018, onapristone, and/or fareston toremifene and pharmaceutically acceptable salts, acids
  • the payload may be an aromatase inhibitor that inhibits the enzyme aromatase, which regulates estrogen production in the adrenal glands - such as, for example, 4(5)-imidazoles, aminoglutethimide, megestrol acetate, AROMASIN®. exemestane, formestanie, fadrozole, RIVISOR®. vorozole, FEMARA®. letrozole, and ARIMIDEX® and/or anastrozole and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above.
  • an aromatase inhibitor that inhibits the enzyme aromatase, which regulates estrogen production in the adrenal glands - such as, for example, 4(5)-imidazoles, aminoglutethimide, megestrol acetate, AROMASIN®. exemestane, formestanie, fadrozole, RIVISOR®. vorozole, FEMARA®. letrozole, and ARIM
  • the payload may be an anti-androgen such as flutamide, nilutamide, bicalutamide, leuprolide, goserelin and/or troxacitabine and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above.
  • an anti-androgen such as flutamide, nilutamide, bicalutamide, leuprolide, goserelin and/or troxacitabine and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above.
  • the payload may be a protein or an antibody.
  • the payload is a cytokine (e.g., an interleukin such as IL2, IL10, IL12, IL15; a member of the TNF superfamily; or an interferon such as interferon gamma.).
  • cytokine e.g., an interleukin such as IL2, IL10, IL12, IL15; a member of the TNF superfamily; or an interferon such as interferon gamma.
  • Any payload may be used in unmodified or modified form. Combinations of payloads in which some are unmodified and some are modified may be used.
  • the payload may be chemically modified.
  • One form of chemical modification is the derivatisation of a carbonyl group - such as an aldehyde.
  • the payload moiety C is a topoisomerase inhibitor; preferably camptothecin (CPT) or a derivative thereof; more preferably derived (e.g., by replacing a hydrogen atom) from topotecan, irinotecan, silatecan, cositecan, exatecan, lurtotecan, gimatecan, belotecan, rubitecan; even more preferably exatecan; even more preferably wherein each n is 0, 1 , 2, 3, 4, 5 or 6; and most preferably
  • moiety C is an auristatin (i.e., having a structure derived from an auristatin compound family member) or an auristatin derivative. More preferably, moiety C has a structure according to the following formula: wherein:
  • R d1 is independently H or C 1 -C 6 alkyl; preferably H or CH 3 ; is independently C 1 -C 6 alkyl; preferably CH3 or iPr;
  • R d3 is independently H or C 1 -C 6 alkyl; preferably H or CH3;
  • R d4 is independently H, C 1 -C 6 alkyl, COO(C 1 -C 6 alkyl), CON(H or C 1 -C 6 alkyl), C 3 -C 10 aryl or C 3 -C 10 heteroaryl; preferably H, CH 3 , COOH, COOCH 3 or thiazolyl;
  • R d5 is independently H, OH, C 1 -C 6 alkyl; preferably H or OH; and
  • R d6 is independently C 3 -C 1 0 aryl or C 3 -C 1 0 heteroaryl; preferably optionally substituted phenyl or pyridyl.
  • moiety C is derived from MMAE or MMAF.
  • moiety C has a structure according to the following formula: wherein: n is 0, 1 , 2, 3, 4 or 5; preferably 1 ;
  • R 1e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
  • R 2e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; each R 3e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; R 4e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and
  • X is O, NH or S; preferably O.
  • moiety C has a structure according to the following formula: wherein: n is 0, 1 , 2, 3, 4 or 5; preferably 1 R 1f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
  • R 2f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
  • R 3f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and X is O, NH or S; preferably O
  • Preferred compounds according to the present invention may be represented by: wherein B S , B L , x, y and n and the remaining groups are as defined elsewhere herein; more preferably most preferably
  • Preferred compounds are those having a structure according to Table 1 or 3, or FIG. 30 or FIG. 31, their individual diastereoisomers, hydrates, solvates, crystal forms, individual tautomers or pharmaceutically acceptable salts thereof.
  • all groups and variables are defined as further above in the present disclosure.
  • a pharmaceutical composition comprising the compound according to any of the preceding aspects, and a pharmaceutically acceptable excipient.
  • Such pharmaceutical composition is also disclosed for use in: (a) a method for treatment of the human or animal body by surgery or therapy or a diagnostic method practiced on the human or animal body; or (b) a method for therapy or prophylaxis of a subject suffering from or having risk for a disease or disorder; or (c) a method for guided surgery practiced on a subject suffering from or having risk for a disease or disorder; or (d) a method for diagnosis of a disease or disorder, the method being practiced on the human or animal body and involving a nuclear medicine imaging technique, such as Positron Emission Tomography (PET) or Single Photon Emission Computed T omography (SPECT); or (e) a method for targeted delivery of a therapeutic or diagnostic agent to a subject suffering from or having risk for a disease or disorder, wherein in each of the preceding (b)— (e), said disease or disorder is independently selected from hypoxia-related diseases such as cancer, preferably wherein the cancer is selected from the group consisting of breast cancer, pancreatic
  • the compounds described herein may be used to treat disease.
  • the treatment may be therapeutic and/or prophylactic treatment, with the aim being to prevent, reduce or stop an undesired physiological change or disorder.
  • the treatment may prolong survival as compared to expected survival if not receiving treatment.
  • the disease that is treated by the compound may be any disease that might benefit from treatment. This includes chronic and acute disorders or diseases including those pathological conditions which predispose to the disorder.
  • cancer and "cancerous” is used in its broadest sense as meaning the physiological condition in mammals that is typically characterized by unregulated cell growth.
  • a tumor comprises one or more cancerous cells.
  • the therapeutically effect that is observed may be a reduction in the number of cancer cells; a reduction in tumor size; inhibition or retardation of cancer cell infiltration into peripheral organs; inhibition of tumor growth; and/or relief of one or more of the symptoms associated with the cancer.
  • efficacy may be assessed by physical measurements of the tumor during the treatment, and/or by determining partial and complete remission of the cancer.
  • efficacy can, for example, be measured by assessing the time to disease progression (TTP) and/or determining the response rate (RR).
  • methods for treatment e.g., by therapy or prophylaxis, of a subject suffering from or having risk for a disease or disorder; or by guided surgery practiced on a subject suffering from or having risk for a disease or disorder; method for diagnosis of a disease or disorder, e.g., diagnostic method practiced on the human or animal body and/or involving a nuclear medicine imaging technique, such as Positron Emission Tomography (PET) or Single Photon Emission Computed Tomography (SPECT); method for targeted delivery of a therapeutic or diagnostic agent to a subject suffering from or having risk for a disease or disorder.
  • PET Positron Emission Tomography
  • SPECT Single Photon Emission Computed Tomography
  • said disease or disorder may be independently selected from hypoxia-related diseases such as cancer, preferably wherein the cancer is selected from the group consisting of breast cancer, pancreatic cancer, colon cancer, multi-drug resistant colon cancer, rectal cancer, colorectal cancer, metastatic colorectal cancer, lung cancer, non-small cell lung cancer, head and neck cancer, ovarian cancer, hypopharynx cancer, nasopharynx cancer, larynx cancer, bladder cancer, cholangiocarcinoma, clear cell renal carcinoma, glioma, astrocytoma, cervix cancer and kidney cancer.
  • hypoxia-related diseases such as cancer
  • the cancer is selected from the group consisting of breast cancer, pancreatic cancer, colon cancer, multi-drug resistant colon cancer, rectal cancer, colorectal cancer, metastatic colorectal cancer, lung cancer, non-small cell lung cancer, head and neck cancer, ovarian cancer, hypopharynx cancer, nasopharynx cancer, larynx cancer, bladder
  • the compounds described herein may be in the form of pharmaceutical compositions which may be for human or animal usage in human and veterinary medicine (e.g., as therapeutic or diagnostic compositions) and will typically comprise any one or more of a pharmaceutically acceptable diluent, carrier, or excipient.
  • Acceptable carriers or diluents for therapeutic use are well known in the pharmaceutical art, and are described, for example, in Remington's Pharmaceutical Sciences, Mack Publishing Co. (A. R. Gennaro edit. 1985).
  • the choice of pharmaceutical carrier, excipient or diluent can be selected with regard to the intended route of administration and standard pharmaceutical practice.
  • the pharmaceutical compositions may comprise as - or in addition to - the carrier, excipient or diluent any suitable binder(s), lubricant(s), suspending agent(s), coating agent(s), solubilising agent(s).
  • Preservatives, stabilisers, dyes and even flavouring agents may be provided in the pharmaceutical composition.
  • preservatives include sodium benzoate, sorbic acid and esters of p- hydroxy benzoic acid.
  • Antioxidants and suspending agents may be also used.
  • the pharmaceutical composition may be formulated to be administered using a minipump or by a mucosal route, for example, as a nasal spray or aerosol for inhalation or ingestable solution, or parenterally in which the composition is formulated by an injectable form, for delivery, by, for example, an intravenous, intramuscular or subcutaneous route.
  • the formulation may be designed to be administered by a number of routes.
  • the agent If the agent is to be administered mucosally through the gastrointestinal mucosa, it should be able to remain stable during transit though the gastrointestinal tract; for example, it should be resistant to proteolytic degradation, stable at acid pH and resistant to the detergent effects of bile.
  • the pharmaceutical compositions may be administered by inhalation, in the form of a suppository or pessary, topically in the form of a lotion, solution, cream, ointment or dusting powder, by use of a skin patch, orally in the form of tablets containing excipients such as starch or lactose, or in capsules or ovules either alone or in admixture with excipients, or in the form of elixirs, solutions or suspensions containing flavouring or colouring agents, or the pharmaceutical compositions can be injected parenterally, for example, intravenously, intramuscularly or subcutaneously.
  • compositions may be best used in the form of a sterile aqueous solution which may contain other substances, for example, enough salts or monosaccharides to make the solution isotonic with blood.
  • compositions may be administered in the form of tablets or lozenges which can be formulated in a conventional manner.
  • the compound of the present invention may be administered in the form of a pharmaceutically acceptable or active salt.
  • Pharmaceutical ly-acceptable salts are well known to those skilled In the art, and for example, include those mentioned by Berge et al, in J.Pharm.Sci., 66, 1-19 (1977).
  • Salts include, but are not limited, to sulfate, citrate, acetate, oxalate, chloride, bromide, iodide, nitrate, bisulfate, phosphate, acid phosphate, isonicotinate, lactate, salicylate, acid citrate, tartrate, oleate, tannate, pantothenate, bitartrate, ascorbate, succinate, maleate, gentislnate, fumarate, gluconate, glucaronate, saccharate, formate, benzoate, glutamate, methanesulfonate, ethanesulfonate, benzenesulfonate, p-toluenesulfonate, and pamoate (i.e., 1 ,1 '-methylene-bis-(2-hydroxy-3-naphthoate)) salts.
  • pamoate i.e., 1 ,1 '-methylene
  • the routes for administration may include, but are not limited to, one or more of oral (e.g. as a tablet, capsule, or as an ingestable solution), topical, mucosal (e.g. as a nasal spray or aerosol for inhalation), nasal, parenteral (e.g. by an injectable form), gastrointestinal, intraspinal, intraperitoneal, intramuscular, intravenous, intrauterine, intraocular, intradermal, intracranial, intratracheal, intravaginal, intracerebroventricular, intracerebral, subcutaneous, ophthalmic (including intravitreal or intracameral), transdermal, rectal, buccal, vaginal, epidural, sublingual.
  • oral e.g. as a tablet, capsule, or as an ingestable solution
  • mucosal e.g. as a nasal spray or aerosol for inhalation
  • nasal parenteral (e.g. by an injectable form)
  • gastrointestinal intraspinal, intraperitoneal
  • a physician will determine the actual dosage which will be most suitable for an individual subject.
  • the specific dose level and frequency of dosage for any particular patient may be varied and will depend upon a variety of factors including the activity of the specific compound employed, the metabolic stability and length of action of that compound, the age, body weight, general health, sex, diet, mode and time of administration, rate of excretion, drug combination, the severity of the particular condition, and the individual undergoing therapy.
  • the formulations may be packaged in unit-dose or multi-dose containers, for example sealed ampoules and vials, and may be stored in a freeze-dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water, for administration.
  • sterile liquid carrier for example water
  • Extemporaneous injection solutions and suspensions are prepared from sterile powders, granules and tablets of the kind previously described.
  • Exemplary unit dosage formulations contain a daily dose or unit daily sub-dose, or an appropriate fraction thereof, of the active ingredient.
  • the compounds described herein may be prepared by chemical synthesis techniques. It will be apparent to those skilled in the art that sensitive functional groups may need to be protected and deprotected during synthesis of a compound. This may be achieved by conventional techniques, for example as described in "Protective Groups in Organic Synthesis” by T W Greene and P G M Wuts, John Wiley and Sons Inc. (1991), and by P.J.Kocienski, in “Protecting Groups", Georg Thieme Verlag (1994). It is possible during some of the reactions that any stereocentres present could, under certain conditions, be epimerised, for example if a base is used in a reaction with a substrate having an optical centre comprising a base-sensitive group. It should be possible to circumvent potential problems such as this by choice of reaction sequence, conditions, reagents, protection/deprotection regimes, etc. as is well-known in the art.
  • Antibody is used in its broadest sense and covers monoclonal antibodies, polyclonal antibodies, dimers, multimers, multispecific antibodies (e.g., bispecific antibodies), veneered antibodies, antibody fragments and small immune proteins (SIPs) (see Int. J. Cancer (2002) 102, 75-85).
  • An antibody is a protein generated by the immune system that is capable of recognizing and binding to a specific antigen.
  • a target antigen generally has numerous binding sites, also called epitopes, recognized by CDRs on multiple antibodies. Each antibody that specifically binds to a different epitope has a different structure. Thus, one antigen may have more than one corresponding antibody.
  • An antibody includes a full-length immunoglobulin molecule or an immunologically active portion of a full-length immunoglobulin molecule, i.e. a molecule that contains an antigen binding site that immunospecifically binds an antigen of a target of interest or part thereof.
  • the antibodies may be of any type - such as IgG, IgE, IgM, IgD, and IgA) - any class - such as IgG 1 , lgG2, lgG3, lgG4, lgA1 and lgA2 - or subclass thereof.
  • the antibody may be or may be derived from murine, human, rabbit or from other species.
  • antibody fragments refers to a portion of a full length antibody, generally the antigen binding or variable region thereof.
  • antibody fragments include, but are not limited to, Fab, Fab', F(ab') 2 , and Fv fragments; diabodies; linear antibodies; single domain antibodies, including dAbs, camelid V HH antibodies and the IgNAR antibodies of cartilaginous fish.
  • Antibodies and their fragments may be replaced by binding molecules based on alternative non-immunoglobulin scaffolds, peptide aptamers, nucleic acid aptamers, structured polypeptides comprising polypeptide loops subtended on a non-peptide backbone, natural receptors or domains thereof. Derivative.
  • a derivative includes the chemical modification of a compound.
  • modifications include the replacement of a hydrogen by a halo group, an alkyl group, an acyl group or an amino group and the like.
  • the modification may increase or decrease one or more hydrogen bonding interactions, charge interactions, hydrophobic interactions, van der Waals interactions and/or dipole interactions.
  • Analog This term encompasses any enantiomers, racemates and stereoisomers, as well as all pharmaceutically acceptable salts and hydrates of such compounds.
  • Alkyl refers to a branched or unbranched saturated hydrocarbyl radical.
  • the alkyl group comprises from 1 to 100, preferably 3 to 30, carbon atoms, more preferably from 5 to 25 carbon atoms.
  • alkyl refers to methyl, ethyl, propyl, butyl, pentyl, or hexyl.
  • Alkenyl refers to a branched or unbranched hydrocarbyl radical containing one or more carbon-carbon double bonds.
  • the alkenyl group comprises from 2 to 30 carbon atoms, preferably from 5 to about 25 carbon atoms.
  • Alkynyl refers to a branched or unbranched hydrocarbyl radical containing one or more carbon-carbon triple bonds.
  • the alkynyl group comprises from about 3 to about 30 carbon atoms, for example from about 5 to about 25 carbon atoms.
  • Halogen refers to fluorine, chlorine, bromine or iodine, preferably fluorine or chlorine.
  • Cycloalkyl refers to an alicyclic moiety, suitably having 3, 4, 5, 6, 7 or 8 carbon atoms.
  • the group may be a bridged or polycyclic ring system. More often cycloalkyl groups are monocyclic. This term includes reference to groups such as cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, norbornyl, bicyclo[2.2.2]octyl and the like.
  • Aryl refers to an aromatic carbocyclic ring system, suitably comprising 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 or 16 ring carbon atoms.
  • Aryl may be a polycyclic ring system, having two or more rings, at least one of which is aromatic. This term includes reference to groups such as phenyl, naphthyl fluorenyl, azulenyl, indenyl, anthryl and the like.
  • Diastereomers or diastereoisomers refer to stereoisomers of a compound having different configurations at one or more stereocenters in parts of the molecule other than moiety A. That is, unless specified otherwise, the stereochemical of moiety A configuration is always as represented in the respective structure, and the individual diastereomers differ in their stereochemical configuration in the in parts of the molecule other than moiety A.
  • Hetero signifies that one or more of the carbon atoms of the group may be substituted by nitrogen, oxygen, phosphorus, silicon or sulfur.
  • Heteroalkyl groups include for example, alkyloxy groups and alkythio groups.
  • Heterocycloalkyl or heteroaryl groups herein may have from 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15 or 16 ring atoms, at least one of which is selected from nitrogen, oxygen, phosphorus, silicon and sulfur.
  • a 3- to 10-membered ring or ring system and more particularly a 5- or 6-membered ring which may be saturated or unsaturated.
  • oxiranyl selected from oxiranyl, azirinyl, 1 ,2-oxathiolanyl, imidazolyl, thienyl, furyl, tetrahydrofuryl, pyranyl, thiopyranyl, thianthrenyl, isobenzofuranyl, benzofuranyl, chromenyl, 2H-pyrrolyl, pyrrolyl, pyrrolinyl, pyrrolidinyl, imidazolyl, imidazolidinyl, benzimidazolyl, pyrazolyl, pyrazinyl, pyrazolidinyl, thiazolyl, isothiazolyl, dithiazolyl, oxazolyl, isoxazolyl, pyridyl, pyrazinyl, pyrimidinyl, piperidyl, piperazinyl, pyridazinyl, morpholinyl, thiomorphollny
  • “Substituted” signifies that one or more, especially up to 5, more especially 1 , 2 or 3, of the hydrogen atoms in said moiety are replaced independently of each other by the corresponding number of substituents.
  • the term “optionally substituted” as used herein includes substituted or unsubstituted. It will, of course, be understood that substituents are only at positions where they are chemically possible, the person skilled in the art being able to decide (either experimentally or theoretically) without inappropriate effort whether a particular substitution is possible. For example, amino or hydroxy groups with free hydrogen may be unstable if bound to carbon atoms with unsaturated (e.g. olefinic) bonds.
  • the term “substituted” signifies one or more, especially up to 5, more especially 1 , 2 or 3, of the hydrogen atoms in said moiety are replaced independently of each other by the corresponding number of substituents selected from OH, SH, NH2, halogen, cyano, carboxy, alkyl, cycloalkyl, aryl and heteroaryl.
  • substituents described herein may themselves be substituted by any substituent, subject to the aforementioned restriction to appropriate substitutions as recognised by the skilled person.
  • any of the aforementioned substituents may be further substituted by any of the aforementioned substituents, each of which may be further substituted by any of the aforementioned substituents.
  • Substituents may suitably include halogen atoms and halomethyl groups such as CF 3 and CCI 3 ; oxygen containing groups such as oxo, hydroxy, carboxy, carboxyalkyl, alkoxy, alkoyl, alkoyloxy, aryloxy, aryloyl and aryloyloxy; nitrogen containing groups such as amino, alkylamino, dialkylamino, cyano, azide and nitro; sulfur containing groups such as thiol, alkylthiol, sulfonyl and sulfoxide; heterocyclic groups which may themselves be substituted; alkyl groups, which may themselves be substituted; and aryl groups, which may themselves be substituted, such as phenyl and substituted phenyl.
  • Alkyl includes substituted and unsubstituted benzyl.
  • R1 is represented by
  • R ⁇ a is independently a 6- to 10-membered aromatic group, a 5- to 10-membered heteroaromatic group having up to 5, preferably up to 3, heteroatoms independently selected from N, O and S, or a group represented by -C((CR(R’)) n SO 2 NR(R’))(CR(R’)) n SO 2 NR(R’), wherein R 1 a is optionally substituted, in addition to SO2NR(R’), by one or more substituents preferably represented by R 3 , wherein:
  • G 1 is independently selected from C(Y), SO, SO 2 , CR(R'), triazolyl, and CR(R')triazolyl;
  • G 2 is independently selected from C(Y), C(Y)NR, SONR, SO 2 NR, CR(R')NR, NRC(Y), NRSO, NR SO 2 , NRCR(R'), triazolyl, triazolyl-NR, triazolyl-CR(R'), NR-triazolyl, and CR(R')-triazolyl; each of q and s is independently selected from 0 and 1 ; r is independently selected from 0, 1 , 2, 3 and 4, preferably 2; preferably with the proviso that at least one of q and s is 1 , more preferably both q and s are 1; preferably with the proviso that q + r + s ⁇ 1, more preferably ⁇ 2, most preferably ⁇ 3; n is independently selected from 0, 1 , 2, 3, and 4, preferably 3;
  • R 2 is represented by R 2a -(CR(R’))p-C(Y)-, or R 2 and the group RN- form together a residue represented by R 2a -(G 4 ) v -(CR(R’)) u -(G 3 ) t -;
  • R 2a is a 6- to 10-membered aromatic group, 5- to 10-membered heteroaromatic group having up to 5, preferably up to 3, heteroatoms independently selected from N, O and S and optionally substituted by C 1 -4 alkyl, or a group represented by C 6-10 aryl-NR-C(Y)-N(R)- C 6-10 aryl-, wherein R 2a is optionally substituted with one or more substituents preferably represented by R 4 wherein;
  • G 3 is independently selected from C(Y)NR, SONR, SO 2 NR, CR(R')NR, triazolyl, triazolylCR(R'), and CR(R')triazolyl;
  • G 4 is independently selected from C(Y), NRC(Y), NRSO, NRSO 2 , NRCR(R'), C(Y)NR, SONR, SO 2 NR, CR(R')NR, triazolyl, NRtriazolyl, triazolylNR, CR(R')triazolyl, and triazolyl CR(R'), each of t and v is independently 0 or 1 ; u is independently selected from 0, 1 , 2, 3 and 4, preferably 3 preferably with the proviso that at least one of t and v is 1 , more preferably both t and v are 1; preferably with the proviso that t + u + v ⁇ 1 , more preferably ⁇ 2, most preferably ⁇ 3; and p is independently 1 , 2, 3 or 4, preferably 1 or 2, more preferably 1 ; wherein one or more occurrence of CR(R’) may be optionally replaced by a group independently selected from O, S, C(Y) and NR
  • R B represents R 2a -(CR(R’)) p -C(Y)-N(R)- or R 2a -(G 4 ) v -(CR(R’)) u -(G 3 ).
  • R 1 is represented by -C(Y)-R 1 a -SO2NR(R’);
  • R 1 a is independently a 5-membered heteroaromatic group having up to 3 heteroatoms independently selected from N, O and S, and wherein the heteroaromatic group is substituted, in addition to SO2NR(R’), by one or more substituents R ⁇ ;
  • R 2 is represented by R 2a -(CR(R’)) p -C(Y)-;
  • R 2a is a 6- to 10-membered aromatic group, and is optionally substituted with one or more substituents R 4 ; and p is independently 1 , 2, 3 or 4, preferably 1 or 2, more preferably 1 ; wherein one or more occurrence of CR(R’) may be optionally replaced by a group independently selected from O, S and NR, with the proviso that no two O atoms are adjacent to each other; each occurrence of Y is independently selected from O, S, NR and CR(R’); each R 3 and R 4 is independently selected from: NH2, OH, COOH, COOR, C 1- 6 alkyl, C 1- 6 haloalkyl, O(C 1- 6 alkyl ), O(C 1- 6 haloalkyl), O(C 2-6 alkenyl), C 1- 6 heteroalkyl, NO 2 , C(O)NH 2 , C(O)NR(R’), CN, OXO and halogen, wherein R ⁇ and R ⁇ each independently may optionally form
  • R 1 is represented by -C(Y)-R 1 a -SO 2 NR(R’);
  • R 1 a is independently a 5-membered heteroaromatic group having up to 3 heteroatoms independently selected from N, O and S, and wherein the heteroaromatic group is substituted, in addition to SO2NR(R’), by one or more substituents R 3 ;
  • R 2 is represented by R 2a -(CR(R’)) p -C(Y)-;
  • R 2a is a 6- to 10-membered aromatic group, and is optionally substituted with one or more substituents R 4 ; and p is independently 1 or 2, preferably 1 ; each occurrence of Y is independently selected from O, S, NR and CR(R’); each R 3 and R 4 is independently selected from: NH2, OH, COOH, COOR, C 1- 6 alkyl, C 1- 6 haloalkyl, oxo and halogen; and each occurrence of R and R’ is independently H or selected from C 1- 6 -alkyl, O(C 1- 6 alkyl ), C 3-10 cycloalkyl, O( C 3-10 cycloalkyl), S(C 3-10 cycloalkyl), C 2-6 alkenyl, C 2-6 alkynyl, C 1- 6 heteroalkenyl, C 1- 6 heteroal kynyl, C 3-10 cycloalkenyl, C 1 -10 cycloheteroalkenyl, C 6-10 aryl
  • R 1 a is independently a 5-membered heteroaromatic group having up to 3 heteroatoms independently selected from N, O and S, preferably thiophene, and wherein the heteroaromatic group is substituted, in addition to SO 2 NR(R’), by 1 or 2 substituents R 3 ;
  • R 2a is a 6- to 10-membered aromatic group, preferably phenyl, substituted by 0, 1, 2 or 3 substituents R 4 ; p is 1; each occurrence of Y is O; and/or each R 3 and R 4 is independently selected from OCH 3 , OCH 2 CH 3 , OCH 2 CH 2 CH 3 , OCH 2 (CH 3 ) 2 , O-cyclopropyl, OCF 3 , OCF 2 CF 3 , COOH, COOCH 3 , NO 2 , CN, F, Cl, Br and I.
  • each R ⁇ and R ⁇ is independently selected from F, Cl, Br and I.
  • A is represented by the following structure A 1 A 2 , or A 3 : wherein: c is independently 1 or 2, preferably 1 ; d is independently 0, 1 , 2, 3, 4 or 5, preferably 2; W is independently selected from NR, O, S, S(O) and SO 2 , and is preferably S;
  • R 3a is independently selected from F, Cl, Br and I, and is preferably Cl;
  • R 3b is independently selected from F, Cl, Br, I and H, and is preferably H;
  • R 4a and R 4 b are each independently selected from OCH 3 , OCH 2 CH 3 , OCH 2 CH 2 CH 3 , OCH 2 (CH 3 ) 2 , O-cyclopropyl, OCF 3 , OCF 2 CF 3 , COOH, COOCH 3 , NO 2 , CN, F, Cl, Br and I, and are each preferably Cl or OCH 3 .
  • A is represented by the following structure
  • a 4 The compound of aspect 9 or 10, wherein each R 3 and R 4 is independently selected from F, Cl, Br and I.
  • A is represented by the following structure A-1: The compound of any of the preceding aspects, wherein A is represented by the following structure A-5: The compound of any of aspects 1 to 8, wherein A is represented by the following structure A 11 ,
  • a 12 , A 13 or A 14 wherein: c is independently 1 or 2, preferably 1 ; d is independently 0, 1 , 2, 3, 4 or 5, preferably 1 ;
  • W is independently selected from NR, O, S, S(O) and SO 2 , and is preferably S;
  • R 3a is independently selected from F, Cl, Br and I
  • R 3b is independently selected from F, Cl, Br, I and H, and is preferably H
  • R 4C is independently selected from OCH 3 , OCH 2 CH 3 , OCH 2 CH 2 CH 3 , OCH 2 (CH 3 ) 2 , O- cyclopropyl, OCF 3 , OCF 2 CF 3 , COOH, COOCH 3 , NO 2 , CN, F, Cl, Br and I, and is preferably NO 2 ; and
  • R 4d is independently selected from H, OCH 3 , OCH 2 CH 3 , OCH 2 CH 2 CH 3 , OCH 2 (CH 3 ) 2 , O- cyclopropyl, OCF 3 , OCF 2 CF 3 , COOH, COOCH 3 , NO 2 , CN, F, Cl, Br and I, and is preferably H.
  • A is represented by the following structure A-4:
  • each of W 1 , W 3 , W 4 is independently selected from CH, S, O, and N, wherein at least one is S or O, preferably wherein W 1 is S or O, more preferably wherein W 1 is S and each of and is N. 19.
  • A is represented by the following structure:
  • A is represented by the following structure: 22.
  • A is represented by the following structure: wherein each of W 1, W 3 , W 4 is independently selected from CH, S, O, and N, wherein at least one is S or O, preferably wherein W 1 is S or O, more preferably wherein W 1 is S and each of and W 4 is N.
  • each R 3 is halogen
  • each R 4 is independently selected from O(C 1- 6 alkyl ), NO 2 and halogen.
  • R 2a is phenyl substituted by two groups R 4 at positions 4 and 2 on the phenyl ring or wherein R 4a and R 4b are, respectively, at positions 4 and 2 of the phenyl ring, each relative to the attachment point to CR(R’).
  • R 1 a is substituted by one group R 3 which is halogen
  • R 2a is substituted by one or two groups R 4 each independently selected from O(C 1- 6 alkyl), NO 2 and halogen.
  • R 2 is represented by a structure selected from:
  • B is a single bond or an optionally substituted C 1- 50 aliphatic group, in which optionally one or more carbon atoms can be replaced by heteroatom, a C 3-12 carbocyclic or a C 1- 12 heterocyclic group, and which can be saturated or optionally contain one or more double or triple bonds; and each C is an atom, a molecule or a particle, and/or is a therapeutic or diagnostic agent.
  • B is a single bond or is represented by any of the following general Formulae II— V, lla-Va or Ilb-Vb:
  • B S and B L is independently selected from alkylene, cycloalkylene, arylalkylene, heteroarylalkylene, heteroalkylene, heterocycloalkylene, alkenylene, cycloalkenylene, arylalkenylene, heteroarylalkenylene, heteroalkenylene, heterocycloalenkylene, alkynylene, heteroalkynylene, arylene, heteroarylene, aminoacyl, oxyalkylene, aminoalkylene, diacid ester, dialkylsiloxane, amide, thioamide, thioether, thioester, ester, carbamate, hydrazone, thiazolidine, methylene alkoxy carbamate, disulfide, vinylene, imine, imidamide, phosphoramide, saccharide, phosphate ester, phosphoramide, carb
  • B is represented by (B s ) x wherein: each x is selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9 and 10; each B S is independently selected from the group consisting of alkylene, cycloalkylene, arylalkylene, heteroarylalkylene, heteroalkylene, heterocycloalkylene, alkenylene, cycloalkenylene, arylalkenylene, heteroarylalkenylene, heteroalkenylene, heterocycloalenkylene, alkynylene, heteroalkynylene, arylene, heteroarylene, aminoacyl, oxyalkylene, aminoalkylene, dlacld ester, dialkylsiloxane, amide, thioamlde, thioether, thioester, ester, carbamate, hydrazone, thiazolidine, methylene alkoxy carbamate, disulfide, vinylene, imine,
  • 6-alkyl C 3-10 cycloalkyl, O(C 3-10 cycloalkyl), S(C 3-10 cycloalkyl), C 2-6 alkenyl, C 2-6 alkynyl, C 1- 6 heteroalkenyl, C 1- 6 heteroal kynyl, C 3-10 cycloalkenyl, C 1 -10 cycloheteroalkenyl, C 6-10 aryl, C 1 -10 heteroaryl, (C 6-10 aryl)C 1- 6 alkyl and ( C 1 -10 heteroaryl)C 1- 6 alkyl, each of which can be optionally substituted with from 1 to 3 substituents selected from C 1- 6 -alkyl, OH, oxo and halogen.
  • each * represents a point of attachment for which the shortest path to a moiety A comprises less atoms than that for •; and each • represents a point of attachment for which the shortest path to a moiety C comprises less atoms than that for *, with the proviso that when n is > 1 and a respective point of attachment is indicated on any one of R c , R d and R e , then it can be independently present in one or more of the peptide monomeric units, preferably in one peptide monomeric unit most distant from the other point of attachment indicated in the respective structure, wherein each of the above structures optionally comprises a further attachment point to a moiety A or C.
  • each of AA 3 , AA 4 , AA 5 , AA 6 , AA 7 , and AA 8 represents a proteinogenic or non- proteinogenic amino acid, or is absent; wherein preferably: each proteinogenic or non-proteinogenic amino acid is preferably independently represented by one of the following structures: and/or AA 4 is an amino acid with a charged sidechain, and AA 7 is an amino acid with an aliphatic sidechain; wherein more preferably: AA 3 is selected from Asp, Glu, and Lys, or is absent; preferably Asp;
  • AA 4 is selected from Arg, HomoArg, Lys, Asp, and Glu, or is absent; preferably Lys or Arg;
  • AA 5 is selected from Asp, Glu, and Lys; preferably Asp;
  • AA 6 is selected from Cys, Lys, Gly and Vai; preferably Cys or Lys;
  • AA 7 is selected from Gly, Ala, Vai, Arg, lie, Pro; and AA 8 is selected from Pro and citrulline (Cit); even more preferably according to one of the sequences shown in the below table: or
  • each -D or -B-C is independently represented by any one of the following structures:
  • the moiety C is a chelating agent group suitable for radiolabeling; a radioactive group comprising a radioisotope; a chelate of a radioactive isotope with a chelating agent; a fluorophore group; a cytotoxic and/or cytostatic agent; immunomodulator agent; or a protein, wherein preferably:
  • the chelating agent group suitable for radiolabeling is selected from sulfur colloid, diethylenetriaminepentaacetic acid (DTPA), ethylenediaminetetraacetic acid (EDTA), 1,4,7,10- tetraazacyclododecane-N,N',N",N” , -tetraacetic acid (DOTA), 1,4,7-triazacyclononane-N,N',N"- triacetic acid (NOTA), 1,4,8,11-tetraazacyclotetradecane-N,N',N",N” , -tetraacetic acid (TETA), iminodiacetic acid, bis(carboxymethylimidazole)glycine, 6-Hydrazinopyridine-3-carboxylic acid (HYNIC),
  • n 0, 1 , 2, 3, 4 or 5; preferably 1 ;
  • R 1e is independently H, COOH, aryl COOH or heteroaryl COOH; preferably COOH;
  • R 2e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; each R 3e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; R 4e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and X is O, NH or S; preferably O; or has a structure according to the following formula: wherein: n is 0, 1 , 2, 3, 4 or 5; preferably 1
  • R 1f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
  • R 2f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
  • R 3f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and X is O, NH or S; preferably O;
  • the chelate of a radioactive isotope is a chelate of an isotope listed under (b) above and/or with a chelating agent listed under (a) above; or moiety C is a group selected from any of the following structures: wherein X is CH, O, N or S, preferably CH;
  • M is a radioactive isotope, preferably selected among the list underr (b) above; more preferably:
  • the fluorophore group is selected from a xanthene dye, acridine dye, oxazine dye, cyanine dye, styryl dye, coumarine dye, porphine dye, fluorescent metal-ligand-complex, fluorescent protein, nanocrystals, perylene dye, boron-dipyrromethene dye and phtalocyanine dye, preferably selected from the following structures:
  • the cytotoxic and/or cytostatic agent is selected from chemotherapeutic agent selected from the group consisting of topoisomerase inhibitors, alkylating agents, antimetabolites, antibiotics, mitotic disrupters, DNA intercalating agents, DNA synthesis inhibitors, DNA-RNA transcription regulator, enzyme inhibitors, gene regulators, hormone response modifiers, hypoxia-selective cytotoxins, epidermal growth factor inhibitors, anti-vascular agents and a combination of two or more thereof, preferably selected from the following structures:
  • moiety C is an auristatin derivative, preferably having a structure according to the following formula: wherein:
  • R 1d is independently H or C 1 -C 6 alkyl; preferably H or CH 3 ;
  • R 2d is independently C 1 -C 6 alkyl; preferably CH3 or IPr;
  • R 3d is independently H or C 1 -C 6 alkyl; preferably H or CH3; R 4d is independently H, C 1 -C 6 alkyl, COO(C 1 -C 6 alkyl), CON(H or C 1 -C 6 alkyl), C 3 -C 10 aryl or
  • C 3 -C 10 heteroaryl preferably H, CH 3 , COOH, COOCH 3 or thiazolyl;
  • R 5d is independently H, OH, C 1 -C 6 alkyl; preferably H or OH;
  • R 6d is independently C 3 -C 10 aryl or C 3 -C 10 heteroaryl; preferably optionally substituted phenyl or pyridyl, wherein preferably, moiety C is derived from MMAE or MMAF; or a topoisomerase inhibitor; preferably camptothecin (CPT) or a derivative thereof; more preferably derived (e.g., by replacing a hydrogen atom) from topotecan, irinotecan, silatecan, cositecan, exatecan, lurtotecan, gimatecan, belotecan, rubitecan, deruxtecan, DXd; even more preferably exatecan; even more preferably
  • the immunomodulator agent is selected from molecules known to be able to modulate the immune system, such as ligands of CD3, CD25, TLRs, STING, 4-1 BBL, 4-1 BB, PD-1, mTor,
  • the protein is selected from cytokines, such as IL2, IL10, IL12, IL15, TNF, Interferon Gamma, or is an antibody.
  • cytokines such as IL2, IL10, IL12, IL15, TNF, Interferon Gamma, or is an antibody.
  • A-B is represented by a structure selected from:
  • (b) C is represented by a structure selected from:
  • the combination of A-B and C is preferably selected such that the covalent bond — connecting B with C is represented by S— S, S— C, C— S, C(O)— R a , C(O)— N, C(O)— O, C(O)— N, N— C(O), N— C(O)O, N— C(S) or OC(O)— N.
  • moiety A is selected from A-1 to A-5.
  • moiety B is selected from B-1 to B-21.
  • moiety C is selected from C-1 to C-31.
  • a pharmaceutical composition comprising the compound according to any one of the preceding aspects, and a pharmaceutically acceptable excipient.
  • a method for diagnosis of a disease or disorder the method being practiced on the human or animal body and involving a nuclear medicine imaging technique, such as Positron Emission Tomography (PET) or Single Photon Emission Computed Tomography (SPECT); or
  • PET Positron Emission Tomography
  • SPECT Single Photon Emission Computed Tomography
  • a method for targeted delivery of a therapeutic or diagnostic agent to a subject suffering from or having risk for a disease or disorder 59.
  • hypoxia-related diseases such as cancer
  • the cancer is selected from the group consisting of breast cancer, pancreatic cancer, colon cancer, multi-drug resistant colon cancer, rectal cancer, colorectal cancer, metastatic colorec
  • LC/MS Liquid-Chromatography/Mass-Spectrometry
  • Solid-phase synthesis was performed with preloaded Fmoc-Lys(Boc)-Wang resin (200-400 mesh, 0.5 mmol/g; Bachem, #4003241.0005).
  • resin was swollen for 30 min in dimethylformamide (DMF) previous to any reaction steps.
  • Incubations were performed in 10 mL reaction columns (CEM Corporation, #32.276) on a rotator mixer (Reax 2, Heidolph Instruments GmbH & Co. KG) at room temperature.
  • Resin was incubated for 2 x 15 min with 20% piperidine in DMF. After the deprotection, the resin was washed 5-10 times with DMF to remove residual piperidine.
  • the acid (2 eq.), O-(7-azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium hexafluorophosphate (HATU, 1.9 eq.) and diisopropylethylamine (DIPEA, 4 eq.) were dissolved in DMF and added to the resin bearing chemical moieties with a free amino group. After incubation for 4 h, the resin was subsequently washed five times with DMF. Coupling efficiency could be monitored by LC-MS analysis (mini cleavage).
  • Cleavage solution was prepared as following: 95% trifluoracetic acid (TFA), 2.5% water and 2.5% triisopropylsilane (TIPS). Where specified, 2.5% thioanisol and 2.5% m-cresol were added as scavengers. Highest yields were obtained when performing three consecutive cleavages (1 h at room temperature each). Cleavage fractions were combined and either directly purified via RP HPLC or precipitated in diethyl ether for subsequent purification (see below).
  • TFA trifluoracetic acid
  • TIPS triisopropylsilane
  • the order of loading was: N-(fluorenylmethoxycarbonyl)-N6-(tert-butoxycarbonyl)-L-lysine (preloaded), N-(fluorenylmethoxycarbonyl)-L-aspartic acid tert-butyl ester, N-(fluorenylmethoxycarbonyl)- beta-alanine.
  • the tripeptide linker synthesized on resin was split into four 250 mg batches (corresponding to 0.125 mmol loading capacity each). Each batch was coupled with one isomer of the proline derivative (RR, SS, RS, SR) following the standard protocol for amide couplings.
  • I6 was coupled at lower equivalents (47 mg, 0.138 mmol, 1.1 eq. acid; 47.5 mg, 0.125 mmol, 1 eq. HATU and 174 ⁇ L DIPEA, 1 mmol, 8 eq. DIPEA), leaving the reaction overnight. Subsequent azide reduction was followed by coupling of 2-(2,4-dichlorophenyl)acetic acid, using 6 equivalents of the acid (154 mg, 0.75 mmol), 5 equivalents HATU (238 mg, 0.625 mmol) and 8 equivalents DIPEA (174 ⁇ L, 1 mmol). The reaction proceeded overnight at room temperature.
  • the tripeptide linker Lys-Asp- ⁇ Ala-NH2 was synthesized on resin (125 mg, 0.06 mmol) as reported above and reacted with an acetazolamide derivative (4-oxo-4-[(5-sulfamoyl-1 ,3,4-thiadiazol-2-yl)amino]butanoic acid, 73 mg, 0.21 mmol, 4 eq.) in the presence of HATU (81 mg, 0.21 mmol, 4 eq.) and DIPEA (300 ⁇ L, 1 .72 mmol, 8 eq.) in DMF.
  • 2-(2,4-Dichlorophenyl)acetic acid (5 mg, 23 ⁇ mol, 1 eq.) was dissolved in DMF and pre-activated for 10 min by the addition of EDC (4 ⁇ L, 23 ⁇ mol, 1 eq.), HOBt (3 mg, 23 ⁇ mol, 1 eq.) and DIPEA (15.9 ⁇ L, 91 ⁇ mol, 4 eq.).
  • EDC 4 ⁇ L, 23 ⁇ mol, 1 eq.
  • HOBt 3 mg, 23 ⁇ mol, 1 eq.
  • DIPEA 15.9 ⁇ L, 91 ⁇ mol, 4 eq.
  • 1-Tert-butyl 2-methyl (2R,4R)-4-amino-1 ,2-pyrrolidinedicarboxylate hydrochloride (6.4 mg, 23 ⁇ mol, 1 eq.) was added to the pre-activation solution and incubated for 4 h at room temperature.
  • I6 (1.2 mg, 3.5 ⁇ mol, 1 eq.) was dissolved in 100 ⁇ L DMF to perform pre-activation with EDC (0.6 ⁇ L, 3.4 ⁇ mol, 1 eq.), HOBt (0.5 mg, 3.7 ⁇ mol, 1 eq.) and DIPEA (2.5 ⁇ L, 14 ⁇ mol, 4 eq.). After 10 min at room temperature, I10 (1.9 mg, 3.5 ⁇ mol, 1 eq.) was added to proceed with the coupling for 1 h at room temperature in the dark.
  • 2-(2,4-Dichlorophenyl)acetic acid (3 mg, 15 ⁇ mol, 1 eq.) was dissolved in DMF and pre-activated for 10 min by the addition of EDC (2.6 ⁇ L, 15 ⁇ mol, 1 eq.), HOBt (1.8 mg, 15 ⁇ mol, 1 eq.) and DIPEA (10.5 ⁇ L, 60 ⁇ mol, 4 eq.).
  • EDC 2.6 ⁇ L, 15 ⁇ mol, 1 eq.
  • HOBt 1.8 mg, 15 ⁇ mol, 1 eq.
  • DIPEA 10.5 ⁇ L, 60 ⁇ mol, 4 eq.
  • 1-Tert-butyl 2-methyl (2R,4R)-4-amino-1,2-pyrrolidinedicarboxylate hydrochloride (4.2 mg, 15 ⁇ mol, 1 eq.) was added to the pre-activation solution and incubated for 4 h at room temperature.
  • ester hydrolysis was performed for 3 h at room temperature with NaOH (150 ⁇ L 1 M NaOH aq , 150 ⁇ mol, 10 eq.) in 300 ⁇ L water:THF (1 :1). After neutralization with 1 M HCI aq , the solvent was evaporated under reduced pressure and the crude purified by RP-HPLC to give 113 as a white solid (2.3 mg, 26%).
  • ester hydrolysis was performed for 3 h at room temperature with NaOH (100 ⁇ L 1 M NaOH aq , 100 ⁇ mol, 10 eq.) in 200 ⁇ L water:THF (1 :1). After neutralization with 1 M HCI a q, the solvent was evaporated under reduced pressure and the crude purified by RP-HPLC to give 115 as a white solid (5.3 mg, 80%).
  • 2-(2,4-Dichlorophenyl)acetic acid (3 mg, 15 ⁇ mol, 1 eq.) was dissolved in DMF and pre-activated for 10 min by the addition of EDC (2.6 ⁇ L, 15 ⁇ mol, 1 eq.), HOBt (1.8 mg, 15 ⁇ mol, 1 eq.) and DIPEA (10.5 ⁇ L, 60 ⁇ mol, 4 eq.).
  • EDC 2.6 ⁇ L, 15 ⁇ mol, 1 eq.
  • HOBt 1.8 mg, 15 ⁇ mol, 1 eq.
  • DIPEA 10.5 ⁇ L, 60 ⁇ mol, 4 eq.
  • 1-Tert-butyl 2-methyl (2R,4R)-4-amino-1,2-pyrrolidinedicarboxylate hydrochloride (4.2 mg, 15 ⁇ mol, 1 eq.) was added to the pre-activation solution and incubated for 4 h at room temperature.
  • ester hydrolysis was performed for 3 h at room temperature with NaOH (150 ⁇ L 1 M NaOH aq , 150 ⁇ mol, 10 eq.) in 300 ⁇ L water:THF (1:1). After neutralization with 1 M HCI aq , the solvent was evaporated under reduced pressure and the crude purified by RP-HPLC to give 116 as a white solid (1 .6 mg, 20%).
  • 117, 118, 119, 120 and 121 were synthesized by acid (I7, 112, 113, 115 or 116) pre-activation with EDC (1 eq.), HOBt (1 eq.) and DIPEA (3 eq.) in DMF for 15 min at room temperature, followed by addition of tert-butyl N 6 -(tert-butoxycarbonyl)-L-lysinate hydrochloride (1 eq.). After 20 h at room temperature, the solvent was evaporated and TFA added.
  • C19, C20, C21, C22 and C23 were synthesized by mixing amines (117, 118, 119, 120 or 121) with FITC (0.8 eq.) and DIPEA (3.5 eq.) in DMF for 45 min at room temperature.
  • the mixtures were purified by RP-HPLC, resulting in the products as yellow solids: C19 (0.19 mg, 60% yield), C20 (0.1 mg, 80% yield), C21 (0.08 mg, 52% yield), C22 (0.09 mg, 60% yield), C23 (0.07 mg, 55% yield).
  • Example 2 Affinity and selectivity measurements of compounds by fluorescence polarization
  • a dilution series of the protein in the respective buffer typically 1 :1 was prepared to reach a volume of 5 ⁇ L per well.
  • the fluorophore-conjugated compound was diluted in the protein buffer to reach a concentration of 20 nM, 10 nM (FIG. 35) or 2 nM (FIG. 34) to add 5 ⁇ L to each well.
  • the plate was centrifuged (400 ref, 1 min) and incubated in the dark for 15 min previous to the measurements.
  • Compound C7 and acetazolamide (AAZ*) were screened against human CAIX and CAIX isozymes (bovine CAI I, human CAIV, human CAXII and human CAXIV).
  • Compound C7 was identified as highly selective CAIX ligand with low affinity to human CAXII (no fitting applicable) and no detectable binding to the other isozymes (see FIG. 27 and Table 6).
  • AAZ* tightly bound to all screened carbonic anhydrases with no distinct selectivity for CAIX (see FIG. 27 and Table 6).
  • the selectivity was confirmed expanding the analysis to a set of other protein targets (see FIG. 31 and 32).
  • each X may independently be any of A, C, T and G; and the LNA (bodipy) is a 3’-amino modified 8-mer LNA (5’ GGCTACTA-C6-amino 3’) which has been conjugated to BODIPY-TMR-X (Thermo Fisher Scientific, #D6117), wherein the DNA have been annealed to the complementary BODIPY-modified 8-mer LNA in a 1 :1 molar ratio by mixing 25 ⁇ L of 2 ⁇ M solutions each (in PBS), to subsequently heat the mixture to 70 °C for 5 min and let the solution passively cool down to room temperature for 30 min.
  • LNA LNA
  • Human renal cell carcinoma cell line SKRC-52 were grown in RPMI-1640 supplemented with 10% FBS and 1x antibiotic-antimycoticum at 37 °C, 5% CO2. Cell passaging was performed every second day, using Trypsin-EDTA 0.25% to detach the cells. Cells were used to grow tumors in mice.
  • Balb/c nude mice bearing subcutaneous SKRC-52 tumors (150 - 300 mm3) were injected intravenously with 3 nmol of each compound dissolved in 150 ⁇ L sterile PBS to acquire fluorescence images 4 h postinjection.
  • the CAIX ligand was synthesized as DOTAGA conjugate (compound C11) to allow radiolabeling with
  • mice bearing subcutaneous SKRC-52 tumors (200 - 300 mm 3 ) were injected intravenously with 3 nmol (0.85 MBq) [ 177 Lu]Lu-C11.

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Abstract

The present invention relates to protein ligands against Carbonic Anhydrase IX (CAIX) as target of biomedical relevance. In particular, the highly specific ligands may be able to exclusively interact with antigens expressed on the surface of tumor cells, namely, CAIX, sparing anti-target expressing healthy organs, thus enabling efficient in vivo pharmaco-delivery applications. The ligands may exhibit a particularly low dissociation constant and/or enzyme isoform specificity, and may be suitable for targeted delivery of a payload, such as a therapeutic and/or diagnostic agent, to a site afflicted by or at risk of disease or disorder characterized by expression of CAIX.

Description

CARBONIC ANHYDRASE IX LIGANDS FOR
TARGETED DELIVERY APPLICATIONS
FIELD OF THE INVENTION
The present invention relates to protein ligands against Carbonic Anhydrase IX (CAIX) as target of biomedical relevance. In particular, the highly specific ligands may be able to exclusively interact with antigens expressed on the surface of tumor cells, namely, CAIX, sparing anti-target expressing healthy organs, thus enabling efficient in vivo pharmaco-delivery applications. The ligands may exhibit a particularly low dissociation constant and/or enzyme isoform specificity, and may be suitable for targeted delivery of a payload, such as a therapeutic and/or diagnostic agent, to a site afflicted by or at risk of disease or disorder characterized by expression of CAIX.
BACKGROUND OF THE INVENTION
Carbonic anhydrase IX (CAIX) is a zinc metalloenzyme for which 15 isozymes have been reported in humans, mostly involved in the maintenance of cell homeostasis and carbon dioxide transport[1-2] CAIX is expressed at a low level in healthy tissues (Gl tract, liver and gall bladder), while higher expression has been observed in several solid tumors[2-5] in particular, CAIX is the most validated marker of Renal Cell Carcinoma (RCC) and of hypoxia, providing an attractive target for diagnostic and therapeutic approaches[4-5]
Within several clinical trials, the use of CAIX-targeting antibodies (i.e., Girentuximab) armed with radionuclides have been investigated for diagnosis of breast cancer (www.clinicaltrials.gov Identifier: NCT04758780), urothelial cancer (NCT05046665), renal cell carcinoma (NCT02883153, NCT02497599, NCT03849118) and in combination with nivolumab for the treatment of kidney cancer (NCT05239533).
Poor penetration of solid tumors remains a major limitation of antibody-diagnostics and therapeutics.[6] Cazzamalli and colleagues have shown fast extravasation of small organic ligands in contrast to antibodies, highlighting the suitability of small molecules for targeted inhibition or delivery approaches.[7]
Several small molecule CAIX ligands undergo clinical development as imaging or therapeutic agents (monotherapy or in combination with other therapeutic modalities) against various types of malignancies. Acetazolamide, for example, has been tested in combination with platinum against localized small cell lung cancer (NCT03467360) and with temozolomide against malignant glioma (NCT03011671). SLC-0111, is investigated as monotherapy against solid tumors (NCT02215850) or in combination with gemicitabine for metastatic pancreatic ductal cancer (NCT03450018). DTP348 has been tested as radiosensitizer for solid tumors (NCT02216669). E7070 has been investigated for the treatment of gastric cancer (NCTO0165594), metastatic breast cancer (NCT00080197), solid tumors (NCT00003976, NCT00003981), renal cell carcinoma (NCT00059735), stage IV melanoma (NCT00014625) and as combination treatment for metastatic breast cancer (NCT00165880) and metastatic colorectal ccaanncceerr (NCT00165867, NCT00165854). [F-18JVM4-037 was applied as imaging agent for different cancers (NCT00884520). The COX-2 inhibitor celecoxib has also been investigated in the background of CAIX inhibition to treat cervical intraepithelial neoplasia (NCT00081263), alongside radiation and surgery for advanced head and neck cancer (NCT04162873) and in combination with immunomodulators or chemotherapy against colorectal cancer (NCT01729923), colorectal cancer metastatic to the liver (NCT03403634) and early stage triple negative breast cancer (NCT04081389).
Most Carbonic Anhydrases (CA) ligands and inhibitors in clinical development have a sulfonamide as common functional group. Sulfonamides are a well-known class of carbonic anhydrase inhibitors. [8-9] Sulfonamides with high affinity towards CAIX (e.g., acetazolamide) have been exploited as targeting moiety within Small Molecule-Drug Conjugates (SMDCs) to enable the delivery of radionuclides and cytotoxics for imaging and therapeutic applications, as disclosed in WO2015/114171 and WO2018/154517. [1 0-14]
Sulfonamides typically coordinate to the zinc ion within the highly conserved active site of CAs.[15] Sulfonamide-based CA-binders are therefore pan-isotype CA ligands and inhibitors, with only few selective candidates all of which remain cross-reactive with one or more isotypes. [4, 9, 15] Due to expression of CAs in healthy tissues, there is a need to identify specific CAIX ligands to further improve targeted delivery of diagnostic or therapeutic agents to the site of disease, e.g., by providing high-affinity ligands allowing low dosage, and/or by reducing off-target toxicity.
SUMMARY OF THE INVENTION
The present invention aims at the problem of providing improved binders (ligands) of a target enzyme, namely, CAIX, suitable for targeting applications. The binders should be suitable for binding to or inhibition of the target enzyme, and/or targeted delivery of a payload, such as a therapeutic and/or diagnostic agent, to a site afflicted by or at risk of disease or disorder characterized by expression of CAIX.
BRIEF DESCRIPTION OF THE DRAWINGS
FIG. 1 shows LC-MS chromatogram and mass spectrum of intermediate 11. m/z calculated for C31 H39CI3N7O1 1S2 [M+H]+: 854.1209.
FIG. 2 shows LC-MS chromatogram and mass spectrum of intermediate 12. m/z calculated for C31 H39CI3N7O1 1S2 [M+H]+: 854.1209.
FIG. 3 shows LC-MS chromatogram and mass spectrum of intermediate I3. m/z calculated for C31 H39CI3N7O1 1S2 [M+H]+: 854.1209.
FIG. 4 shows LC-MS chromatogram and mass spectrum of intermediate I4, also referred to as compound C9. m/z calculated for C31 H39CI3N7O1 1S2 [M+H]+: 854.1209.
FIG. 5 shows LC-MS chromatogram and mass spectrum of intermediate 15. m/z calculated for C19H31 N8O10S2 [M+H]+: 595.1599. FIG. 6 shows LC-MS chromatogram and mass spectrum of intermediate 16. m/z calculated for
C10H1 1CINO6S2 [M-H]-: 339.9722.
FIG. 7 shows LC-MS chromatogram and mass spectrum of intermediate I7. m/z calculated for C18H17CI3N3O6S2 [M+H]+: 539.9619.
FIG. 8 shows LC-MS chromatogram and mass spectrum of intermediate I8. m/z calculated for C12H15CIN3O6S2 [M+H]+: 396.0085.
FIG. 9 shows LC-MS chromatogram and mass spectrum of intermediate I9. m/z calculated for C15H17CI2N2O4 [M+H]+: 359.0560.
FIG. 10 shows LC-MS chromatogram and mass spectrum of intermediate 110. m/z calculated for C27H28N3O7S [M+H]+: 538.1642.
FIG. 11 shows LC-MS chromatogram and mass spectrum of compound 01. m/z calculated for C52H49CI3N7O17S2 [M+H]+: 1212.1686.
FIG. 12 shows LC-MS chromatogram and mass spectrum of compound 03. m/z calculated for C52H49CI3N7O17S2 [M+H]+: 1212.1686.
FIG. 13 shows LC-MS chromatogram and mass spectrum of compound C5. m/z calculated for C52H49CI3N7O17S2 [M+H]+: 1212.1686.
FIG. 14 shows LC-MS chromatogram and mass spectrum of compound 07. m/z calculated for C52H49CI3N7O17S2 [M+H]+: 1212.1686.
FIG. 15 shows mass spectrum of compound C2. m/z calculated for C80H97CI3N9O24S6 [M+H]+:
1864.4031.
FIG. 16 shows mass spectrum of compound C4. m/z calculated for C80H97CI3N9O24S6 [M+H]+:
1864.4031.
FIG. 17 shows mass spectrum of compound C6. m/z calculated for C80H97CI3N9O24S6 [M+H]+:
1864.4031.
FIG. 18 shows mass spectrum of C10. m/z calculated for C80H97CI3N9O24S6 [M+H]+: 1864.4031 .
FIG. 19 shows LC-MS chromatogram and mass spectrum of compound 08. m/z calculated for C45H42CI3N6O12S3 [M+H]+: 1059.1083. FIG. 20 shows LC-MS chromatogram and mass spectrum of compound C12. m/z calculated for C39H40CIN6O12S3 [M+H]+: 915.1549.
FIG. 21 shows LC-MS chromatogram and mass spectrum of compound C13. m/z calculated for C42H42Cl2N5O10S [M+H]+: 878.2024.
FIG. 22 shows LC-MS chromatogram and mass spectrum of compound C11. m/z calculated for c50H69Cl3N11°20s2 [M+H]+: 1312.3222.
FIG. 23 shows HPLC chromatogram of [177Lu]LuCl3 (A) and [177Lu]Lu- C11 (B). The signal was recorded with a radio-detector.
FIG. 24 shows LC-MS chromatogram and mass spectrum of compound C14. m/z calculated for C32H30CIN4O10S3 [M+H]+: 761.0807.
FIG. 25 shows LC-MS chromatogram and mass spectrum of compound C15. m/z calculated for c40H42N9O15S3 [M+H]+: 984.1957.
FIG. 26 shows affinity measurement of compounds C1, C3, C5, C7, C8, C12, C13 and C14 by fluorescence polarization (FP) against CAIX. Error bars indicate the standard deviation of three replicates.
FIG. 27 shows affinity measurements of compound C7 and AAZ* by fluorescence polarization against CAIX and respective isozymes. Error bars indicate the standard deviation of three replicates.
FIG. 28 shows I VIS imaging of SKRC-52 tumor bearing Balb/c nude mice 4 hours post intravenous injection with compound C10, 02, C4 and 06 (left to right). The SKRC-52 tumor area is indicated with a white circle. Selective targeting was observed for compound 010 while no preferential accumulation at the tumor sites was observed for the other stereoisomers.
FIG. 29 shows quantitative biodistribution values of SKRC-52 tumor bearing Balb/c nude mice six hours after intravenous injection of [177Lu]Lu- C11 (150 nmol/Kg). Values of %ID/g are given as mean of four replicates (n = 4), with the error bars indicating the standard deviation.
FIG. 30 shows binder selections against Carbonic Anhydrase IX (CAIX), a marker of hypoxia and of renal cell carcinoma. A: Chemical structures of compounds C1 to C14. B: Chemical structures of L1 to L10. C: Evaluation of compound C9 binding capacity by surface plasmon resonance (SPR) against CAIX (left panel) and CAI I (right panel). Compound C9 was immobilized on a CM5 chip (at 963 RUs) and subjected to a serial dilution of the respective protein (16.6 μM to 1.1 μM). D: FP affinity constant values (KD) of compound C7 (red/filled bars) and a fluorescent derivative of acetazolamide (AAZ*, blue/empty bars) against carbonic anhydrase isozymes. KD values are given as mean, with error bars indicating standard deviations of the replicates (n = 3). E: Flow cytometry analysis of SK-RC-52 tumor cells treated with compounds C1, C3, C5, C7 in comparison to the non-stained control (cells alone). FIG. 31 shows FP affinity constant values of compound C7 (2R , 4R ) against a panel of serum proteins, immune-targets and non-related protein targets. KD values are given as mean and error bars indicate standard deviation of the replicates (n = 3). N.D. = not defined; hCAIX = human carbonic anhydrase IX; RSA = rat serum albumin; HSA = human serum albumin; CSA = cynomolgus monkey serum albumin; MSA = mouse serum albumin; Rabbit SA = rabbit serum albumin; BSA = bovine serum albumin; OVA = ovalbumin; Hgb = haemoglobin; AGP = alpha(1)-acid glycoprotein; hlgG4 = human immunoglobulin G4; CD = cluster of differentiation; NKp46 = natural killer cell p46-related protein; NKG2D = natural killer group 2D; IL-9/-15Z-23 = interleukin 9/15/23; LZM = lysozyme; WDR5 = WD repeat-containing protein 5; CREBBP = CREB-binding protein; TEAD = TEA domain family member 1 ; CTSB = cathepsin B; TCPTP = T-cell protein tyrosine phosphatase; TNAP = tissue non-specific alkaline phosphatase; SEAP = secreted alkaline phosphatase; PSMA = prostate-specific membrane antigen; h/mFAP = human/mouse fibroblast-activation protein; uPA = urokinase; MMP-3 = matrix metalloproteinase-3; CHYM = chymotrypsin.
FIG. 32 shows Fluorescence polarization measurements of compound C7 against serum proteins (A), immune-targets (B) and non-related protein targets (C) for selectivity profiling. Measurements were performed in triplicates.
FIG. 33 shows affinity measurements of compounds C16, C17 and C18 by fluorescence polarization against hCAIX (A) and the isozymes bCAII (B), showing that similar affinity towards CAIX and selectivity over CAI I is achieved with these compounds (C).
FIG. 34 shows FP measurements of C19-C23 against CAIX. Error bars indicate the standard deviation of three replicates.
FIG. 35 shows FP measurements of I-387, C8, C19 and I-383. The assay was performed at 5 nM final ligand concentration. Error bars indicate the standard deviation of three replicates.
DETAILED DESCRIPTION
The present invention relates to potent, stereospecific ligands of, inter alia, CAIX, with a particularly low dissociation constant (e.g., in the nanomolar range).
Since the expression of carbonic anhydrases IX isozymes in healthy tissues can result in the accumulation of non-specific binders not only at the site of disease but also in healthy organs, we performed quantitative biodistribution experiments in mice with a CAIX ligand derivative according to the invention which revealed high selectivity for CAIX-expressing tumors, with kidney as the only healthy organ with detectable compound accumulation. Thus, the present invention provides CAIX ligands with surprisingly high target specificity.
The ligands of the invention can be applied as selective inhibitor or targeting agents to disease-relevant tissue, e.g., associated with CAIX expression. The ligands of the invention can be suitably conjugated with various therapeutic and/or diagnostic payloads, including, e.g., fluorophores, radiometal chelators, cytotoxic agents, immunomodulatory agents and therapeutic proteins. The binders provided herein can have pharmaceutical potential. For instance, selective CAIX binders are provided herein which do not react with other carbonic anhydrases. Traditionally, it has been difficult to isolate sulfonamides with high isoform-selectivity against carbonic anhydrases. Surprisingly, derivatives provided herein can display more than 100-fold selectivity for CAIX over other carbonic anhydrases, selectively localized to tumors in vivo, as confirmed by the results, e.g. in FIG. 27 and FIG. 28. Unlike the CAIX ligands of the invention, AAZ* bound to all tested carbonic anhydrases with high affinity (bovine CAII, human CAIV, human CAXII and human CAXIV). Thus, the present invention provides CAIX ligands with surprisingly high isozyme selectivity.
Such derivatives may serve as particularly suitable specific agents to image CAIX at sites of hypoxia and in kidney tumors. In addition to imaging applications, CAIX-specific targeting agents may facilitate the delivery of cytotoxic agents, and may be used as adaptor for universal CAR-T cell conditioning therapy.
Derivatives described herein can exhibit surprising synergistic affinity enhancement. This is confirmed by the results presented herein, e.g., in FIG. 26. To analyze which parts of the molecule are important for the binding of CAIX, the sulfonamide bearing thiophene (compound C12) and the respective proline derivative (compound C14) were identified as micromolar CAIX binders (KD = 1.0 ± 0.1 μM and 1.1 ± 0.2 μM). The 2-(2,4-dichlorophenyl)acetic acid proline derivative (compound C13) did not bind to CAIX. In contrast, the combination with the sulfonamide resulted in the highly potent CAIX ligand (compound C8) with a dissociation constant in the nanomolar range (KD = 6 ± 1 nM).
Derivatives described therein can also exhibit highly stereoselective binding. Only one of the four possible stereoisomers revealed strong binding of the ligand to CAIX. Thus, herein provided are well-defined, potent ligands with surprisingly high binding affinity. The high stereospecificity translated to high isozyme selectivity to CAIX over other carbonic anhydrases (bovine CAII, human CAIV, human CAXII and human CAXIV). We compared the CAIX ligand of the invention to a fluorescent acetazolamide derivative (AAZ*), which is one of the most prominent CAIX binders applied for targeted therapy. This is confirmed by the results presented herein. Affinity against recombinantly expressed human CAIX via fluorescence polarization was measured for four stereoisomers (compound C1 , C3, C5 and C7). Stereoselective binding of compound C7 (2R,4R; KD = 16 ± 2 nM) was observed, while no binding was detected for the other isomers (compound C1, C3 and C5, see FIG. 26). FIG. 34 shows that incorporation of a 5-amino-1,3,4- thiadiazole-2-sulfonamide derivative in the ligands led to further increase of affinity towards CAIX. FIG. 35 shows that the CAIX binding affinity of the ligands is substantially maintained irrespective of variations in the linker B.
Exemplary compounds according to the present invention are listed in Table 1.
Figure imgf000009_0001
Figure imgf000010_0001
Figure imgf000011_0001
6 Further compounds are listed in Table 2.
Table 2. Further compounds
Figure imgf000012_0001
Figure imgf000013_0001
Figure imgf000014_0001
Further exemplary compounds (conjugates) according to the present invention are listed in Tables 3.1 and
3.2. The numbering of these conjugates is independent from the numbering of the remaining compounds in the present specification.
Table 3.1. Exemplary conjugates
1 O O
Figure imgf000014_0002
h
//
Figure imgf000015_0001
Figure imgf000016_0001
Figure imgf000017_0001
Figure imgf000018_0001
O. /< d Zk
9k
Figure imgf000019_0001
NH =^> V HOOD o o
ID kZ
LV
Figure imgf000020_0001
Figure imgf000021_0001
Figure imgf000022_0001
Figure imgf000023_0001
Figure imgf000024_0001
Figure imgf000025_0001
Figure imgf000026_0001
Figure imgf000027_0001
Figure imgf000028_0001
Figure imgf000029_0001
Figure imgf000030_0001
Figure imgf000031_0001
Figure imgf000032_0001
Figure imgf000033_0001
Figure imgf000034_0001
Figure imgf000035_0001
Figure imgf000036_0001
Figure imgf000037_0001
Figure imgf000038_0001
Figure imgf000039_0001
Figure imgf000040_0001
Figure imgf000041_0004
As used herein,
Figure imgf000041_0003
denotes an antibody (e.g., a therapeutically and/or diagnostically useful protein); denotes a protein (e.g., a therapeutically and/or diagnostically useful protein); and C’-S-
Figure imgf000041_0002
denotes a thiolyl group on a side chain of an amino acid forming part of the protein.
Further preferred conjugates of the present invention are shown in Table 3.2. The below abbreviations for preferred moieties A, B and C will be used throughout the present specification.
Figure imgf000041_0001
Figure imgf000042_0001
Figure imgf000043_0001
Figure imgf000044_0001
Figure imgf000045_0001
C
A
A
T
Figure imgf000046_0001
Compound No. / A _ B C M@C
Figure imgf000046_0002
Figure imgf000047_0001
Figure imgf000048_0001
Figure imgf000049_0001
Figure imgf000050_0001
Figure imgf000051_0001
Figure imgf000052_0001
Figure imgf000053_0001
Figure imgf000054_0001
Figure imgf000055_0001
Figure imgf000056_0001
Figure imgf000057_0002
Moiety A
Without wishing to be bound by any theory, it is contemplated that the surprising technical effects related to target binding to are associated with the particular structure of the small binding moieties A. That is, an improvement for compounds comprising moiety A over a corresponding compound not having such moiety is expected to be observed.
The compounds of the present invention can have an increased affinity, slower dissociation rate with respect to the target(s) as compared to prior art compounds, and therefore are also considered to as having a prolonged residence at the disease site at a therapeutically or diagnostically relevant level, preferably beyond 1 h, more preferably beyond 6 h post injection. Preferably, the highest enrichment is achieved after
5 min, 10 min, 20 min, 30 min, 45 min, 1 h, 2 h, 3 h, 4 h, 5 h or 6 h; and/or enrichment in the disease site is maintained at a therapeutically or diagnostically relevant level, over a period of or at least for 5 min, 10 min, 20 min, 30 min, 45 min, 1 h, 2 h, 3 h, 4 h, 5 h or 6 h, more preferably beyond 6 h post injection.
Moiety A is represented by the following structure:
Figure imgf000057_0001
wherein R1 , R2, R, a and b are as defined elsewhere herein. Groups particularly suitable as R1 and/or R2 are provided in the below Table 4. Table 4. Overview of building blocks suitable as R1 and/or R2 and the respective codes (A.../B...) as used in the Examples section.
Figure imgf000058_0001
A particularly preferred structure of moiety A exhibiting very high target selectivity, stereospecificity and binding affinity for CAIX is:
Figure imgf000058_0003
Further particularly preferred structures of moiety A exhibiting very high target selectivity, stereospecificity and binding affinity for CAIX are:
Figure imgf000058_0002
Further particularly preferred structures of moiety A are:
Figure imgf000059_0001
Moiety B
Moiety B is a covalent bond or a moiety comprising a chain of atoms that covalently attaches A to the payload C, e.g., through one or more covalent bond(s). The moiety B may be cleavable or non-cleavable, multifunctional moiety which can be used to link one or more payload and/or binder moieties to form the targeted conjugate of the invention.
Specifically, moiety B is a multifunctional moiety linking one or more moieties C and/or moieties A. B can be a single bond, or an optionally substituted C 1 -50 aliphatic group, In which optionally one or more carbon atoms can be replaced by a heteroatom, a C3-12 carbocyclic or a C1- 12 heterocyclic group, and which can be saturated optionally contain one or more double or triple bonds. The structure of the compound comprises more than one, preferably 2 or 3 moieties A per molecule. The structure of the compound may comprise more than one moieties C, preferably 2 or 3 moieties C per molecule. Preferably, the structure of the compound comprises 2 moleties A and 1 moiety C, or 2 moieties A and 1 moiety C per molecule.
When cleavable linker units are present within moiety B, release mechanisms can be identical to those specific to antibodies linked to cytotoxic payloads. Indeed, the nature of the binding moieties is independent in that respect. Therefore, there is envisaged pH-dependent [Leamon, C.P. et al (2006) Bioconjugate Chem., 17, 1226; Casi, G. et al (2012) J. Am. Chem. Soc., 134, 5887], reductive [Bernardes, G.J. et al (2012) Angew. Chem. Int. Ed. Engl., 51. 941 ; Yang, J. et al (2006) Proc. Natl. Acad. Sci. USA, 103, 13872] and enzymatic release [Doronina S.O. et al (2008) Bioconjugate Chem, 19, 1960; Sutherland, M.S.K. (2006) J. Biol. Chem, 281, 10540]. In a specific setting, when functional groups are present on either the binding moiety or payloads (e.g. thiols, alcohols) a linkerless connection can be established thus releasing intact payloads, which simplifies substantially pharmacokinetic analysis.
Moiety B can comprise or consist of a unit shown in Table 5 below wherein the substituents R and Rn shown in the formulae may suitably be independently selected from H, halogen, substituted or unsubstituted (hetero)alkyl, (hetero)alkenyl, (hetero)alkynyl, (hetero)aryl, (hetero)arylalkyl, (hetero)cycloalkyl, (hetero)cycloalkylaryl, heterocyclylalkyl, a peptide, an oligosaccharide or a steroid group. Preferably, each of R, R1 , R2 and R3 is independently selected from H, OH, SH, NH2, halogen, cyano, carboxy, alkyl, cycloalkyl, aryl and heteroaryl, each of which is substituted or unsubstituted. Suitably R and Rn are independently selected from H, or C1-C7 alkyl or heteroalkyl. More suitably, R and Rn are independently selected from H, methyl or ethyl. Table 5
Figure imgf000060_0001
Moiety B, unit(s) BL and/or unit(s) BS may suitably comprise as a cleavable bond a disulfide linkage since these linkages are stable to hydrolysis, while giving suitable drug release kinetics at the target in vivo, and can provide traceless cleavage of drug moieties including a thiol group.
Moiety B, unit(s) BL and/or unit(s) BS may be polar or charged in order to improve water solubility of the conjugate. For example, the linker may comprise from about 1 to about 20, suitably from about 2 to about 10, residues of one or more known water-soluble oligomers such as peptides, oligosaccharides, glycosaminoglycans, polyacrylic acid or salts thereof, polyethylene glycol, polyhydroxyethyl (meth) acrylates, polysulfonates, etc. Suitably, the linker may comprise a polar or charged peptide moiety comprising e.g. from 2 to 10 amino acid residues. Amino acids may refer to any natural or non-natural amino acid. The peptide linker suitably includes a free thiol group, preferably a N-terminal cysteine, for forming the said cleavable disulfide linkage with a thiol group on the drug moiety. Any peptide containing L- or D-aminoacids can be suitable; particularly suitable peptide linkers of this type are Asp-Arg-Asp-Cys and/or Asp-Lys-Asp-Cys. In these and other embodiments, moiety B, unit(s) BL and/or unit(s) BS may comprise a cleavable or non- cleavable peptide unit that is specifically tailored so that it will be selectively enzymatically cleaved from the drug moiety by one or more proteases on the cell surface or the extracellular regions of the target tissue. The amino acid residue chain length of the peptide unit suitably ranges from that of a single amino acid to about eight amino acid residues. Numerous specific cleavable peptide sequences suitable for use in the present invention can be designed and optimized in their selectivity for enzymatic cleavage by a particular tumor-associated enzyme e.g. a protease. Cleavable peptides for use in the present invention include those which are optimized toward the proteases MMP-1 , 2 or 3, or cathepsin B, C or D. Especially suitable are peptides cleavable by Cathepsin B. Cathepsin B is a ubiquitous cysteine protease. It is an intracellular enzyme, except in pathological conditions, such as metastatic tumors or rheumatoid arthritis. An example for a peptide cleavable by Cathepsin B is containing the sequence Val-Cit.
In any of the above embodiments, the moiety B and in particular, unit(s) BL suitably further comprise(s) self-immolative moiety can or cannot be present after the linker. The self-immolative linkers are also known as electronic cascade linkers. These linkers undergo elimination and fragmentation upon enzymatic cleavage of the peptide to release the drug in active, preferably free form. The conjugate is stable extracellularly in the absence of an enzyme capable of cleaving the linker. However, upon exposure to a suitable enzyme, the linker is cleaved initiating a spontaneous self-immolative reaction resulting in the cleavage of the bond covalently linking the self-immolative moiety to the drug, to thereby effect release of the drug in its underivatized or pharmacologically active form. In these embodiments, the self-immolative linker is coupled to the binding moiety through an enzymatically cleavable peptide sequence that provides a substrate for an enzyme to cleave the amide bond to initiate the self-immolative reaction. Suitably, the drug moiety is connected to the self-immolative moiety of the linker via a chemically reactive functional group pending from the drug such as a primary or secondary amine, hydroxyl, sulfhydryl or carboxyl group.
Examples of self-immolative linkers are PABC or PAB (para-aminobenzyloxycarbonyl), attaching the drug moiety to the binding moiety in the conjugate (Carl et al (1981) J. Med. Chem. 24: 479-480; Chakravarty et al (1983) J. Med. Chem. 26: 638-644). The amide bond linking the carboxy terminus of a peptide unit and the para-aminobenzyl of PAB may be a substrate and cleavable by certain proteases. The aromatic amine becomes electron-donating and initiates an electronic cascade that leads to the expulsion of the leaving group, which releases the free drug after elimination of carbon dioxide (de Groot, et al (2001) Journal of Organic Chemistry 66 (26): 8815-8830). Further self-immolating linkers are described in W02005/082023.
In yet other embodiments, the linker comprises a glucuronyl group that is cleavable by glucoronidase present on the cell surface or the extracellular region of the target tissue. It has been shown that lysosomal beta-glucuronidase is liberated extracellularly in high local concentrations in necrotic areas in human cancers, and that this provides a route to targeted chemotherapy (Bosslet, K. et al. Cancer Res. 58, 1195- 1201 (1998)).
In any of the above embodiments, the moiety B suitably further comprises a spacer unit. A spacer unit can be the unit BS, which may be linked to the binding moiety A, for example via an amide, amine or thioether bond. The spacer unit is of a length that enables e.g. the cleavable peptide sequence to be contacted by the cleaving enzyme (e. g. cathepsin B) and suitably also the hydrolysis of the amide bond coupling the cleavable peptide to the self-immolative moiety X. Spacer units may for example comprise a divalent radical such as alkylene, arylene, a heteroarylene, repeating units of alkyloxy (e.g. polyethylenoxy, PEG, polymethyleneoxy) and alkylamino (e.g. polyethyleneamino), or diacid ester and amides including succinate, succinamide, diglycolate, malonate, and caproamide.
In any of the embodiments described therein, * represents a point of attachment to moiety A or a point of attachment for which the shortest path to moiety A comprises less atoms than that for •, as the case may be; and • represents a point of attachment a point of attachment to moiety C or a point of attachment to moiety C for which the shortest path to moiety C comprises less atoms than that for *, as the case may be. The same applies also for cases where a reactive moiety L is present rather than payload moiety C. The following notations and all have the meaning of a point of attachment of a certain group or atom (e.g., R) to a further moiety:
Figure imgf000062_0001
As used herein, and unless specified otherwise the groups and fragments described herein may be combined in either orientation, but it is preferred that they are combined in the orientation as drawn herein, reading from left to right, for example:
Fragment (a):
Figure imgf000062_0002
; fragment (b): ; preferred combination of fragments (a) + (b):
Figure imgf000062_0003
Figure imgf000062_0004
If the structure of relevance is a peptide mono- or oligomer, each * represents a point of attachment for which the shortest path to moiety A comprises less atoms than that for •; and each • represents a point of attachment for which the shortest path to moiety C comprises less atoms than that for *, with the proviso that when n is > 1 and a respective point of attachment is indicated on any one of Ra, Rb and Rc, then it can be independently present in one or more of the peptide monomeric units, preferably in one peptide monomeric unit most distant from the other point of attachment indicated in the respective structure.
In any of the embodiments described herein, the terms “peptide”, “dipeptide”, “tripeptide”, “tetrapeptide” etc. refer to peptide mono- or oligomers having a backbone formed by proteinogenic and/or a non- proteinogenic amino acids. As used herein, the terms “aminoacyl” or “aminoacid” generally refer to any proteinogenic or a non-proteinogenic amino acid. Preferably, in any of the embodiments disclosed therein, the side-chain residues of a proteinogenic or a non-proteinogenic amino acid are represented by any of Ra, Rb and Rc, each of which is selected from the following list:
Figure imgf000062_0005
Figure imgf000063_0001
wherein each of R, R1 R2 and R3 is independently selected from H, OH, SH, NH2, halogen, cyano, carboxy, alkyl, cycloalkyl, aryl and heteroaryl, each of which is substituted or unsubstituted; each X is independently selected from NH, NR, S, O and CH2, preferably NH; and each n and m is independently an integer preferably selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15, 16, 17, 18, W and 20.
Preferably, in any of the embodiments disclosed therein, side-chain residues of a proteinogenic or a non- proteinogenic amino acid are represented by any of Ra, Rb , Rc, Rd and Re, each of which may be part of a 3-, 4-, 5-, 6- or 7-membered ring. For instance, the side chain alpha, beta and/or gamma position of said proteinogenic or non-proteinogenic amino acid can be part of a cyclic structure selected from an azetidine ring, pyrrolidine ring and a piperidine ring, such as in the following aminoacids (proline and hydroxyproline):
Figure imgf000063_0002
each of which may independently be part of an unsaturated structure (i.e. wherein the H atom geminal to the respective group Ra, Rb and Rc is absent), e.g.:
Figure imgf000063_0003
As used herein, the following notation of peptide sequences refers to a sequence from N to C terminus, and attachment of group through a horizontal bond (here: moiety C) means covalent attachment to the peptide backbone via amide bond to the respective terminal amino acid (here: AA3):
Figure imgf000064_0001
Is used herein, the following notation of peptide sequences refers to a sequence from N to C terminus, and attachment of group through a vertical bond (here: moiety C) means covalent attachment via the sidechain of the respective amino acid (here: AA3):
Figure imgf000064_0002
Further preferable non-proteinogenic amino acids can be selected from the following list:
Figure imgf000064_0003
Particularly preferred embodiments for the moiety B as well as the compound according to the present invention are shown in the appended claims.
Moiety C
Moiety C in the present invention represents a payload, which can be generally any atom (including H), molecule or particle. Preferably, moiety C is not a hydrogen atom.
The payload may be a chelator for radiolabeling. Suitably the radionuclide is not released. Chelators are well known to those skilled in the art, and for example, include chelators such as sulfur colloid, diethylenetriaminepentaacetic acid (DTPA), ethylenediaminetetraacetic acid (EDTA), 1,4,7,10- tetraazacyclododecane-N,N',N",N",-tetraacetic acid (DOTA), 1 ,4,7,10-tetraazacyclododececane,N- (glutaric acid)-N',N",N"'-triacetic acid (DOTAGA), 1,4,7-triazacyclononane-N,N',N"-triacetic acid (NOTA), 1 ,4,8,11-tetraazacyclotetradecane-N,N',N",N",-tetraacetic acid (TETA), or any of the preferred chelator structures recited in the appended claims or elsewhere herein.
The payload may be a radioactive group comprising or consisting of radioisotope including isotopes such as
Figure imgf000064_0004
Figure imgf000064_0005
Figure imgf000064_0006
, preferably, positron emitters, such as 18F and 124I or gamma emitters, such as
Figure imgf000064_0007
are usec| for diagnostic applications (e.g. for PET), while beta- emitters, such as
Figure imgf000064_0008
are preferably used for therapeutic applications. Alpha-emitters, such as may also be used for therapy. In one preferred embodiment the
Figure imgf000064_0009
radioisotope is
Figure imgf000064_0010
In a further preferred embodiment the radioisotope is 68Ga.
The payload may be a chelate of a radioactive isotope, preferably of an isotope listed under above, with a chelating agent, preferably a chelating agent listed herein. The payload may be a fluorophore group, preferably selected from a xanthene dye, acridine dye, oxazine dye, cyanine dye, styryl dye, coumarine dye, porphine dye, fluorescent metal-ligand-complex, fluorescent protein, nanocrystals, perylene dye, boron-dipyrromethene dye and phtalocyanine dye, more preferably selected from the structures listed herein.
The payload may be a cytotoxic and/or cytostatic agent. Such agents can inhibit or prevent the function of cells and/or cause destruction of cells. Examples of cytotoxic agents include radioactive isotopes, chemotherapeutic agents, and toxins such as small molecule toxins or enzymatically active toxins of bacterial, fungal, plant or animal origin, including synthetic analogues and derivatives thereof. The cytotoxic agent may be selected from the group consisting of an auristatin, a DNA minor groove binding agent, a DNA minor groove alkylating agent, an enediyne, a lexitropsin, a duocarmycin, a taxane, a puromycin, a dolastatin, a maytansinoid and a vinca alkaloid or a combination of two or more thereof. Preferred cytotoxic and/or cytostatic payload moieties are listed herein.
In one embodiment the payload is a chemotherapeutic agent selected from the group consisting of a topoisomerase inhibitor, an alkylating agent (e.g., nitrogen mustards; ethylenimes; alkylsulfonates; triazenes; piperazines; and nitrosureas), an antimetabolite (e.g., mercaptopurine, thioguanine, 5- fluorouracil), an antibiotics (e.g., anthracyclines, dactinomycin, bleomycin, adriamycin, mithramycin. dactinomycin) a mitotic disrupter (e.g., plant alkaloids - such as vincristine and/or microtubule antagonists -such as paclitaxel), a DNA methylating agent, a DNA intercalating agent (e.g., carboplatin and/or cisplatin, daunomycin and/or doxorubicin and/or bleomycin and/or thalidomide), a DNA synthesis inhibitor, a DNA- RNA transcription regulator, an enzyme inhibitor, a gene regulator, a hormone response modifier, a hypoxia-selective cytotoxin (e.g., tirapazamine), an epidermal growth factor inhibitor, an anti-vascular agent (e.g., xanthenone 5,6-dimethylxanthenone-4-acetic acid), a radiation-activated prodrug (e.g., nitroarylmethyl quaternary (NMQ) salts) or a bioreductive drug or a combination of two or more thereof. In some embodiments, the payload (i.e., moiety C) is not derived from an anthracycline, preferably not derived from PNU 159682.
The chemotherapeutic agent may selected from the group consisting of Erlotinib (TARCEVA®), Bortezomib (VELCADE®), Fulvestrant (FASLODEX®), Sutent (SU11248), Letrozole (FEMARA®), Imatinib mesylate (GLEEVEC®), PTK787/ZK 222584, Oxaliplatin (Eloxatin®.), 5-FU (5-fluorouracil), Leucovorin, Rapamycin (Sirolimus, RAPAMUNE®.), Lapatinib (GSK572016), Lonafarnib (SCH 66336), Sorafenib (BAY43-9006), and Gefitinib (IRESSA®.), AG1478, AG1571 (SU 5271 ; Sugen) or a combination of two or more thereof.
The chemotherapeutic agent may be an alkylating agent - such as thiotepa, CYTOXAN® and/or cyclosphosphamide; an alkyl sulfonate - such as busulfan, improsulfan and/or piposulfan; an aziridine - such as benzodopa, carboquone, meturedopa and/or uredopa; ethylenimines and/or methylamelamines - such as altretamine, triethylenemelamine, triethylenepbosphoramide, triethylenethiophosphoramide and/or trimethylomelamine; acetogenin - such as bullatacin and/or bullatacinone; camptothecin; bryostatin; callystatin; cryptophycins; dolastatin; duocarmycin; eleutherobin; pancratistatin; sarcodictyin; spongistatin; nitrogen mustards - such as chlorambucil, chlornaphazine, cholophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide and/or uracil mustard; nitrosureas - such as carmustine, chlorozotocin, fotemustine, lomustine, nimustine, and/or ranimnustine; dynemicin; bisphosphonates - such as clodronate; an esperamicin; a neocarzinostatin chromophore; aclacinomysins, actinomycin, authramycin, azaserine, bleomycins, cactinomycin, carabicin, carminomycin, carzinophilin, chromomycinis, dactinomycin, daunorubicin, detorubicin, 6-diazo-5-oxo-L-norleucine, ADRIAMYCIN®. doxorubicin - such as morpholinodoxorubicin, cyanomorpholino-doxorubicin, 2-pyrrolino-doxorubicin and/or deoxydoxorubicin, epirubicin, esorubicin, idarubicin, marcellomycin, mitomycins - such as mitomycin C, mycophenolic acid, nogalamycin, olivomycins, peplomycin, potfiromycin, puromycin, quelamycin, rodorubicin, streptonigrin, streptozocin, tubercidin, ubenimex, zinostatin, zorubicin; anti-metabolites - such as methotrexate and 5-fluorouracil (5- FU); folic acid analogues - such as denopterin, methotrexate, pteropterin, trimetrexate; purine analogues - such as fludarablne, 6-mercaptopurine, thiamlprine, thioguanine; pyrimidine analogues - such as ancitabine, azacitidine, 6-azauridine, carmofur, cytarabine, dideoxyuridine, doxifluridine, enocitabine, floxuridine; androgens - such as calusterone, dromostanolone propionate, epitiostanol, mepitiostane, testolactone; anti-adrenals - such as aminoglutethimide, mitotane, trilostane; folic acid replenisher - such as frolinic acid; aceglatone; aldophosphamide glycoside; aminolevulinic acid; eniluracil; amsacrine; bestrabucil; bisantrene; edatraxate; defofamine; demecolcine; diaziquone; elformithine; elliptinium acetate; an epothilone; etoglucid; gallium nitrate; hydroxyurea; lentinan; lonidainine; macrocyclic depsipeptides such as maytansine and ansamitocins; mitoguazone; mitoxantrone; mopidanmol; nitraerine; pentostatin; phenamet; pirarubicin; losoxantrone; podophyllinic acid; 2-ethylhydrazide; procarbazine; razoxane; rhizoxin; sizofiran; spirogermanium; tenuazonic acid; triaziquone; 2,2',2"-trichlorotriethylamine; trichothecenes - such as verracurin A, roridin A and/or anguidine; urethan; vindesine; dacarbazine; mannomustine; mitobronitol; mitolactol; pipobroman; gacytosine; arabinoside; cyclophosphamide; thiotepa; taxoids - such as TAXOL®. paclitaxel, abraxane, and/or TAXOTERE®, doxetaxel; chloranbucil; GEMZAR®. gemcitabine; 6-thioguanine; mercaptopurine; methotrexate; platinum analogues - such as cisplatin and carboplatin; vinblastine; platinum; etoposide; ifosfamide; mitoxantrone; vincristine; NAVELBINE®, vinorelbine; novantrone; teniposide; edatrexate; daunomycin; aminopterin; xeloda; ibandronate; topoisomerase inhibitor RFS 2000; difluoromethylomithine (DMFO); retinoids - such as retinoic acid; capecitabine; and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above.
The payload may be a tubulin disruptor including but are not limited to: taxanes - such as paclitaxel and docetaxel, vinca alkaloids, dlscodermolide, epothilones A and B, desoxyepothilone, cryptophycins, curacin A, combretastatin A-4-phosphate, BMS 247550, BMS 184476, BMS 188791 ; LEP, RPR 109881 A, EPO 906, TXD 258, ZD 6126, vinflunine, LU 103793, dolastatin 10, E7010, T138067 and T900607, colchicine, phenstatin, chaicones, indanocine, T138067, oncocidin, vincristine, vinblastine, vinorelbine, vinflunine, halichondrin B, isohomohalichondrin B, ER-86526, pironetin, spongistatin 1 , spiket P, cryptophycin 1 , LU103793 (cematodin or cemadotin), rhizoxin, sarcodictyin, eleutherobin, laulilamide, VP-16 and D-24851 and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above.
The payload may be a DNA intercalator including but are not limited to: acridines, actinomycins, anthracyclines, benzothiopyranoindazoles, pixantrone, crisnatol, brostallicin, CI-958, doxorubicin (adriamycin), actinomycin D, daunorubicin (daunomycin), bleomycin, idarubicin, mitoxantrone, cyclophosphamide, melphalan, mitomycin C, bizelesin, etoposide, mitoxantrone, SN-38, carboplatin, cis- acceptable salts, acids, derivatives or combinations of two or more of any of the above.
The payload may be an anti-hormonal agent that acts to regulate or inhibit hormone action on tumors - such as anti-estrogens and selective estrogen receptor modulators, Including, but not limited to, tamoxifen, raloxifene, droloxifene, 4-hydroxytamoxifen, trioxifene, keoxifene, LY117018, onapristone, and/or fareston toremifene and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above. The payload may be an aromatase inhibitor that inhibits the enzyme aromatase, which regulates estrogen production in the adrenal glands - such as, for example, 4(5)-imidazoles, aminoglutethimide, megestrol acetate, AROMASIN®. exemestane, formestanie, fadrozole, RIVISOR®. vorozole, FEMARA®. letrozole, and ARIMIDEX® and/or anastrozole and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above.
The payload may be an anti-androgen such as flutamide, nilutamide, bicalutamide, leuprolide, goserelin and/or troxacitabine and pharmaceutically acceptable salts, acids, derivatives or combinations of two or more of any of the above.
The payload may be a protein or an antibody. Preferably, the payload is a cytokine (e.g., an interleukin such as IL2, IL10, IL12, IL15; a member of the TNF superfamily; or an interferon such as interferon gamma.).
Any payload may be used in unmodified or modified form. Combinations of payloads in which some are unmodified and some are modified may be used. For example, the payload may be chemically modified. One form of chemical modification is the derivatisation of a carbonyl group - such as an aldehyde.
In a preferred embodiment, the payload moiety C is a topoisomerase inhibitor; preferably camptothecin (CPT) or a derivative thereof; more preferably derived (e.g., by replacing a hydrogen atom) from topotecan, irinotecan, silatecan, cositecan, exatecan, lurtotecan, gimatecan, belotecan, rubitecan; even more preferably exatecan; even more preferably
Figure imgf000067_0001
wherein each n is 0, 1 , 2, 3, 4, 5 or 6; and most preferably
Figure imgf000067_0002
In a preferred embodiment, moiety C is an auristatin (i.e., having a structure derived from an auristatin compound family member) or an auristatin derivative. More preferably, moiety C has a structure according to the following formula:
Figure imgf000068_0001
wherein:
Rd1 is independently H or C1 -C6 alkyl; preferably H or CH3; is independently C1 -C6 alkyl; preferably CH3 or iPr;
Rd3 is independently H or C1 -C6 alkyl; preferably H or CH3;
Rd4 is independently H, C1 -C6 alkyl, COO(C1 -C6 alkyl), CON(H or C1 -C6 alkyl), C3-C10 aryl or C3-C10 heteroaryl; preferably H, CH3, COOH, COOCH3 or thiazolyl;
Rd5 is independently H, OH, C1 -C6 alkyl; preferably H or OH; and
Rd6 is independently C3-C 10 aryl or C3-C10 heteroaryl; preferably optionally substituted phenyl or pyridyl.
More preferably, moiety C is derived from MMAE or MMAF.
In a preferred embodiment, moiety C has a structure according to the following formula:
Figure imgf000068_0002
wherein: n is 0, 1 , 2, 3, 4 or 5; preferably 1 ;
R1e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
R2e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; each R3e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; R4e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and
X is O, NH or S; preferably O.
In a preferred embodiment, moiety C has a structure according to the following formula:
Figure imgf000069_0001
wherein: n is 0, 1 , 2, 3, 4 or 5; preferably 1 R1f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
R2f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
R3f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and X is O, NH or S; preferably O
Particularly preferred embodiments for the moiety C as well as the compound according to the present invention are shown in the appended claims or elsewhere herein.
Preferred compounds according to the present invention may be represented by:
Figure imgf000069_0002
Figure imgf000070_0002
wherein BS, BL , x, y and n and the remaining groups are as defined elsewhere herein; more preferably
Figure imgf000070_0003
most preferably
Figure imgf000070_0001
Preferred compounds are those having a structure according to Table 1 or 3, or FIG. 30 or FIG. 31, their individual diastereoisomers, hydrates, solvates, crystal forms, individual tautomers or pharmaceutically acceptable salts thereof. In all structures, unless otherwise specified, all groups and variables are defined as further above in the present disclosure. Also disclosed is a pharmaceutical composition comprising the compound according to any of the preceding aspects, and a pharmaceutically acceptable excipient. Such pharmaceutical composition is also disclosed for use in: (a) a method for treatment of the human or animal body by surgery or therapy or a diagnostic method practiced on the human or animal body; or (b) a method for therapy or prophylaxis of a subject suffering from or having risk for a disease or disorder; or (c) a method for guided surgery practiced on a subject suffering from or having risk for a disease or disorder; or (d) a method for diagnosis of a disease or disorder, the method being practiced on the human or animal body and involving a nuclear medicine imaging technique, such as Positron Emission Tomography (PET) or Single Photon Emission Computed T omography (SPECT); or (e) a method for targeted delivery of a therapeutic or diagnostic agent to a subject suffering from or having risk for a disease or disorder, wherein in each of the preceding (b)— (e), said disease or disorder is independently selected from hypoxia-related diseases such as cancer, preferably wherein the cancer is selected from the group consisting of breast cancer, pancreatic cancer, colon cancer, multidrug resistant colon cancer, rectal cancer, colorectal cancer, metastatic colorectal cancer, lung cancer, non-small cell lung cancer, head and neck cancer, ovarian cancer, hypopharynx cancer, nasopharynx cancer, larynx cancer, bladder cancer, cholangiocarcinoma, clear cell renal carcinoma, glioma, astrocytoma, cervix cancer and kidney cancer
Treatment
The compounds described herein may be used to treat disease. The treatment may be therapeutic and/or prophylactic treatment, with the aim being to prevent, reduce or stop an undesired physiological change or disorder. The treatment may prolong survival as compared to expected survival if not receiving treatment. The disease that is treated by the compound may be any disease that might benefit from treatment. This includes chronic and acute disorders or diseases including those pathological conditions which predispose to the disorder.
The term "cancer" and "cancerous" is used in its broadest sense as meaning the physiological condition in mammals that is typically characterized by unregulated cell growth. A tumor comprises one or more cancerous cells. When treating cancer, the therapeutically effect that is observed may be a reduction in the number of cancer cells; a reduction in tumor size; inhibition or retardation of cancer cell infiltration into peripheral organs; inhibition of tumor growth; and/or relief of one or more of the symptoms associated with the cancer.
In animal models, efficacy may be assessed by physical measurements of the tumor during the treatment, and/or by determining partial and complete remission of the cancer. For cancer therapy, efficacy can, for example, be measured by assessing the time to disease progression (TTP) and/or determining the response rate (RR).
Particularly preferred embodiments for the methods of treatment related to the present invention are shown in the appended claims.
Herein disclosed are also methods for treatment of the human or animal body, e.g., by surgery or therapy, or diagnostic method practiced on the human or animal body, the methods involving a step of administering a therapeutically or diagnostically effective amount of a compound or a pharmaceutical composition as described herein to a subject in need thereof. More specifically, herein disclosed are methods for treatment, e.g., by therapy or prophylaxis, of a subject suffering from or having risk for a disease or disorder; or by guided surgery practiced on a subject suffering from or having risk for a disease or disorder; method for diagnosis of a disease or disorder, e.g., diagnostic method practiced on the human or animal body and/or involving a nuclear medicine imaging technique, such as Positron Emission Tomography (PET) or Single Photon Emission Computed Tomography (SPECT); method for targeted delivery of a therapeutic or diagnostic agent to a subject suffering from or having risk for a disease or disorder. In the aforementioned methods, said disease or disorder may be independently selected from hypoxia-related diseases such as cancer, preferably wherein the cancer is selected from the group consisting of breast cancer, pancreatic cancer, colon cancer, multi-drug resistant colon cancer, rectal cancer, colorectal cancer, metastatic colorectal cancer, lung cancer, non-small cell lung cancer, head and neck cancer, ovarian cancer, hypopharynx cancer, nasopharynx cancer, larynx cancer, bladder cancer, cholangiocarcinoma, clear cell renal carcinoma, glioma, astrocytoma, cervix cancer and kidney cancer.
Pharmaceutical compositions
The compounds described herein may be in the form of pharmaceutical compositions which may be for human or animal usage in human and veterinary medicine (e.g., as therapeutic or diagnostic compositions) and will typically comprise any one or more of a pharmaceutically acceptable diluent, carrier, or excipient. Acceptable carriers or diluents for therapeutic use are well known in the pharmaceutical art, and are described, for example, in Remington's Pharmaceutical Sciences, Mack Publishing Co. (A. R. Gennaro edit. 1985). The choice of pharmaceutical carrier, excipient or diluent can be selected with regard to the intended route of administration and standard pharmaceutical practice. The pharmaceutical compositions may comprise as - or in addition to - the carrier, excipient or diluent any suitable binder(s), lubricant(s), suspending agent(s), coating agent(s), solubilising agent(s).
Preservatives, stabilisers, dyes and even flavouring agents may be provided in the pharmaceutical composition. Examples of preservatives include sodium benzoate, sorbic acid and esters of p- hydroxy benzoic acid. Antioxidants and suspending agents may be also used.
There may be different composition/formulation requirements dependent on the different delivery systems. By way of example, the pharmaceutical composition may be formulated to be administered using a minipump or by a mucosal route, for example, as a nasal spray or aerosol for inhalation or ingestable solution, or parenterally in which the composition is formulated by an injectable form, for delivery, by, for example, an intravenous, intramuscular or subcutaneous route. Alternatively, the formulation may be designed to be administered by a number of routes.
If the agent is to be administered mucosally through the gastrointestinal mucosa, it should be able to remain stable during transit though the gastrointestinal tract; for example, it should be resistant to proteolytic degradation, stable at acid pH and resistant to the detergent effects of bile.
Where appropriate, the pharmaceutical compositions may be administered by inhalation, in the form of a suppository or pessary, topically in the form of a lotion, solution, cream, ointment or dusting powder, by use of a skin patch, orally in the form of tablets containing excipients such as starch or lactose, or in capsules or ovules either alone or in admixture with excipients, or in the form of elixirs, solutions or suspensions containing flavouring or colouring agents, or the pharmaceutical compositions can be injected parenterally, for example, intravenously, intramuscularly or subcutaneously. For parenteral administration, the compositions may be best used in the form of a sterile aqueous solution which may contain other substances, for example, enough salts or monosaccharides to make the solution isotonic with blood. For buccal or sublingual administration, the compositions may be administered in the form of tablets or lozenges which can be formulated in a conventional manner.
The compound of the present invention may be administered in the form of a pharmaceutically acceptable or active salt. Pharmaceutical ly-acceptable salts are well known to those skilled In the art, and for example, include those mentioned by Berge et al, in J.Pharm.Sci., 66, 1-19 (1977). Salts include, but are not limited, to sulfate, citrate, acetate, oxalate, chloride, bromide, iodide, nitrate, bisulfate, phosphate, acid phosphate, isonicotinate, lactate, salicylate, acid citrate, tartrate, oleate, tannate, pantothenate, bitartrate, ascorbate, succinate, maleate, gentislnate, fumarate, gluconate, glucaronate, saccharate, formate, benzoate, glutamate, methanesulfonate, ethanesulfonate, benzenesulfonate, p-toluenesulfonate, and pamoate (i.e., 1 ,1 '-methylene-bis-(2-hydroxy-3-naphthoate)) salts.
The routes for administration (delivery) may include, but are not limited to, one or more of oral (e.g. as a tablet, capsule, or as an ingestable solution), topical, mucosal (e.g. as a nasal spray or aerosol for inhalation), nasal, parenteral (e.g. by an injectable form), gastrointestinal, intraspinal, intraperitoneal, intramuscular, intravenous, intrauterine, intraocular, intradermal, intracranial, intratracheal, intravaginal, intracerebroventricular, intracerebral, subcutaneous, ophthalmic (including intravitreal or intracameral), transdermal, rectal, buccal, vaginal, epidural, sublingual.
Typically, a physician will determine the actual dosage which will be most suitable for an individual subject. The specific dose level and frequency of dosage for any particular patient may be varied and will depend upon a variety of factors including the activity of the specific compound employed, the metabolic stability and length of action of that compound, the age, body weight, general health, sex, diet, mode and time of administration, rate of excretion, drug combination, the severity of the particular condition, and the individual undergoing therapy.
The formulations may be packaged in unit-dose or multi-dose containers, for example sealed ampoules and vials, and may be stored in a freeze-dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water, for administration. Extemporaneous injection solutions and suspensions are prepared from sterile powders, granules and tablets of the kind previously described. Exemplary unit dosage formulations contain a daily dose or unit daily sub-dose, or an appropriate fraction thereof, of the active ingredient.
General techniques
The practice of the present invention employs, unless otherwise indicated, conventional methods of chemistry, biochemistry, molecular biology, cell biology, genetics, immunology and pharmacology, known to those of skill of the art. Such techniques are explained fully in the literature. See, e. g. , Gennaro, A. R., ed. (1990) Remington's Pharmaceutical Sciences, 18th ed., Mack Publishing Co.; Hardman, J. G., Limbird, L. E., and Gilman, A. G., eds. (2001) The Pharmacological Basis of Therapeutics, 10th ed., McGraw-Hill Co.; CoIowick, S. et al., eds., Methods In Enzymology, Academic Press, Inc.; Weir, D. M. , and Blackwell, C. C., eds. (1986) Handbook of Experimental Immunology, Vols. I-IV, Blackwell Scientific Publications; Maniatis, T. et al., eds. (1989) Molecular Cloning: A Laboratory Manual, 2nd edition, Vols. I-III, Cold Spring Harbor Laboratory Press; Ausubel, F. M. etal., eds. (1999) Short Protocols in Molecular Biology, 4th edition, John Wiley & Sons; Ream et al., eds. (1998) Molecular Biology Techniques: An Intensive Laboratory Course, Academic Press; Newton, C. R., and Graham, A., eds. (1997) PCR (Introduction to Biotechniques Series), 2nd ed., Springer Verlag.
Chemical synthesis
The compounds described herein may be prepared by chemical synthesis techniques. It will be apparent to those skilled in the art that sensitive functional groups may need to be protected and deprotected during synthesis of a compound. This may be achieved by conventional techniques, for example as described in "Protective Groups in Organic Synthesis" by T W Greene and P G M Wuts, John Wiley and Sons Inc. (1991), and by P.J.Kocienski, in "Protecting Groups", Georg Thieme Verlag (1994). It is possible during some of the reactions that any stereocentres present could, under certain conditions, be epimerised, for example if a base is used in a reaction with a substrate having an optical centre comprising a base-sensitive group. It should be possible to circumvent potential problems such as this by choice of reaction sequence, conditions, reagents, protection/deprotection regimes, etc. as is well-known in the art.
Definitions
Antibody. The term "antibody" is used in its broadest sense and covers monoclonal antibodies, polyclonal antibodies, dimers, multimers, multispecific antibodies (e.g., bispecific antibodies), veneered antibodies, antibody fragments and small immune proteins (SIPs) (see Int. J. Cancer (2002) 102, 75-85). An antibody is a protein generated by the immune system that is capable of recognizing and binding to a specific antigen. A target antigen generally has numerous binding sites, also called epitopes, recognized by CDRs on multiple antibodies. Each antibody that specifically binds to a different epitope has a different structure. Thus, one antigen may have more than one corresponding antibody. An antibody includes a full-length immunoglobulin molecule or an immunologically active portion of a full-length immunoglobulin molecule, i.e. a molecule that contains an antigen binding site that immunospecifically binds an antigen of a target of interest or part thereof. The antibodies may be of any type - such as IgG, IgE, IgM, IgD, and IgA) - any class - such as IgG 1 , lgG2, lgG3, lgG4, lgA1 and lgA2 - or subclass thereof. The antibody may be or may be derived from murine, human, rabbit or from other species.
Antibody fragments. The term "antibody fragment" refers to a portion of a full length antibody, generally the antigen binding or variable region thereof. Examples of antibody fragments include, but are not limited to, Fab, Fab', F(ab')2, and Fv fragments; diabodies; linear antibodies; single domain antibodies, including dAbs, camelid VHH antibodies and the IgNAR antibodies of cartilaginous fish. Antibodies and their fragments may be replaced by binding molecules based on alternative non-immunoglobulin scaffolds, peptide aptamers, nucleic acid aptamers, structured polypeptides comprising polypeptide loops subtended on a non-peptide backbone, natural receptors or domains thereof. Derivative. A derivative includes the chemical modification of a compound. Examples of such modifications include the replacement of a hydrogen by a halo group, an alkyl group, an acyl group or an amino group and the like. The modification may increase or decrease one or more hydrogen bonding interactions, charge interactions, hydrophobic interactions, van der Waals interactions and/or dipole interactions.
Analog. This term encompasses any enantiomers, racemates and stereoisomers, as well as all pharmaceutically acceptable salts and hydrates of such compounds.
Unless otherwise stated, the following definitions apply to chemical terms used in connection of compounds of the invention and compositions containing such compounds.
Alkyl refers to a branched or unbranched saturated hydrocarbyl radical. Suitably, the alkyl group comprises from 1 to 100, preferably 3 to 30, carbon atoms, more preferably from 5 to 25 carbon atoms. Preferably, alkyl refers to methyl, ethyl, propyl, butyl, pentyl, or hexyl.
Alkenyl refers to a branched or unbranched hydrocarbyl radical containing one or more carbon-carbon double bonds. Suitably, the alkenyl group comprises from 2 to 30 carbon atoms, preferably from 5 to about 25 carbon atoms.
Alkynyl refers to a branched or unbranched hydrocarbyl radical containing one or more carbon-carbon triple bonds. Suitably, the alkynyl group comprises from about 3 to about 30 carbon atoms, for example from about 5 to about 25 carbon atoms.
Halogen refers to fluorine, chlorine, bromine or iodine, preferably fluorine or chlorine.
Cycloalkyl refers to an alicyclic moiety, suitably having 3, 4, 5, 6, 7 or 8 carbon atoms. The group may be a bridged or polycyclic ring system. More often cycloalkyl groups are monocyclic. This term includes reference to groups such as cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, norbornyl, bicyclo[2.2.2]octyl and the like.
Aryl refers to an aromatic carbocyclic ring system, suitably comprising 6, 7, 8, 9, 10, 11, 12, 13, 14, 15 or 16 ring carbon atoms. Aryl may be a polycyclic ring system, having two or more rings, at least one of which is aromatic. This term includes reference to groups such as phenyl, naphthyl fluorenyl, azulenyl, indenyl, anthryl and the like.
Diastereomers or diastereoisomers, unless specified otherwise, refer to stereoisomers of a compound having different configurations at one or more stereocenters in parts of the molecule other than moiety A. That is, unless specified otherwise, the stereochemical of moiety A configuration is always as represented in the respective structure, and the individual diastereomers differ in their stereochemical configuration in the in parts of the molecule other than moiety A.
The prefix (hetero) herein signifies that one or more of the carbon atoms of the group may be substituted by nitrogen, oxygen, phosphorus, silicon or sulfur. Heteroalkyl groups include for example, alkyloxy groups and alkythio groups. Heterocycloalkyl or heteroaryl groups herein may have from 3, 4, 5, 6, 7, 8, 9, 10, 11 , 12, 13, 14, 15 or 16 ring atoms, at least one of which is selected from nitrogen, oxygen, phosphorus, silicon and sulfur. In particular, a 3- to 10-membered ring or ring system and more particularly a 5- or 6-membered ring, which may be saturated or unsaturated. For example, selected from oxiranyl, azirinyl, 1 ,2-oxathiolanyl, imidazolyl, thienyl, furyl, tetrahydrofuryl, pyranyl, thiopyranyl, thianthrenyl, isobenzofuranyl, benzofuranyl, chromenyl, 2H-pyrrolyl, pyrrolyl, pyrrolinyl, pyrrolidinyl, imidazolyl, imidazolidinyl, benzimidazolyl, pyrazolyl, pyrazinyl, pyrazolidinyl, thiazolyl, isothiazolyl, dithiazolyl, oxazolyl, isoxazolyl, pyridyl, pyrazinyl, pyrimidinyl, piperidyl, piperazinyl, pyridazinyl, morpholinyl, thiomorphollnyl, especially thiomorpholino, indolizinyl, 1 ,3- Dioxo-1 ,3-dihydro-isoindolyl, 3H-indolyl, indolyl, benzimidazolyl, cumaryl, indazolyl, triazolyl, tetrazolyl, purinyl, 4H-quinolizinyl, isoquinolyl, quinolyl, tetrahydroquinolyl, tetrahydroisoquinolyl, decahydroquinolyl, octahydroisoquinolyl, benzofuranyl, dibenzofuranyl, benzothiophenyl, dibenzothiophenyl, phthalazinyl, naphthyridinyl, quinoxalyl, quinazolinyl, quinazolinyl, cinnolinyl, pteridinyl, carbazolyl, [beta]-carbolinyl, phenanthridinyl, acridinyl, perimidinyl, phenanthrolinyl, furazanyl, phenazinyl, phenothiazinyl, phenoxazinyl, chromenyl, isochromanyl, chromanyl, 3,4-dihydro-2H-isoquinolin-1-one, 3,4-dihydro-2H- isoquinolinyl, and the like.
“Substituted” signifies that one or more, especially up to 5, more especially 1 , 2 or 3, of the hydrogen atoms in said moiety are replaced independently of each other by the corresponding number of substituents. The term "optionally substituted" as used herein includes substituted or unsubstituted. It will, of course, be understood that substituents are only at positions where they are chemically possible, the person skilled in the art being able to decide (either experimentally or theoretically) without inappropriate effort whether a particular substitution is possible. For example, amino or hydroxy groups with free hydrogen may be unstable if bound to carbon atoms with unsaturated (e.g. olefinic) bonds. Preferably, the term “substituted” signifies one or more, especially up to 5, more especially 1 , 2 or 3, of the hydrogen atoms in said moiety are replaced independently of each other by the corresponding number of substituents selected from OH, SH, NH2, halogen, cyano, carboxy, alkyl, cycloalkyl, aryl and heteroaryl. Additionally, the substituents described herein may themselves be substituted by any substituent, subject to the aforementioned restriction to appropriate substitutions as recognised by the skilled person. Preferably, any of the aforementioned substituents may be further substituted by any of the aforementioned substituents, each of which may be further substituted by any of the aforementioned substituents.
Substituents may suitably include halogen atoms and halomethyl groups such as CF3 and CCI3; oxygen containing groups such as oxo, hydroxy, carboxy, carboxyalkyl, alkoxy, alkoyl, alkoyloxy, aryloxy, aryloyl and aryloyloxy; nitrogen containing groups such as amino, alkylamino, dialkylamino, cyano, azide and nitro; sulfur containing groups such as thiol, alkylthiol, sulfonyl and sulfoxide; heterocyclic groups which may themselves be substituted; alkyl groups, which may themselves be substituted; and aryl groups, which may themselves be substituted, such as phenyl and substituted phenyl. Alkyl includes substituted and unsubstituted benzyl.
Where two or more moieties are described as being "each independently" selected from a list of atoms or groups, this means that the moieties may be the same or different. The identity of each moiety is therefore independent of the identities of the one or more other moieties.
Aspects
In view of the above, the present disclosure further provides the following specific aspects. A compound, its individual diastereoisomers, its hydrates, its solvates, its crystal forms, its individual tautomers or a pharmaceutically acceptable salt thereof, wherein the compound structure comprises at least one group A independently represented by the following structure:
Figure imgf000077_0001
wherein: a and b are each 0 or 1 , wherein a + b is at least 1 , preferably wherein a and b are each 1 ;
R1 is represented by
Figure imgf000077_0002
R^a is independently a 6- to 10-membered aromatic group, a 5- to 10-membered heteroaromatic group having up to 5, preferably up to 3, heteroatoms independently selected from N, O and S, or a group represented by -C((CR(R’))nSO2NR(R’))(CR(R’))nSO2NR(R’), wherein R1 a is optionally substituted, in addition to SO2NR(R’), by one or more substituents preferably represented by R3, wherein:
G1 is independently selected from C(Y), SO, SO2, CR(R'), triazolyl, and CR(R')triazolyl;
G2 is independently selected from C(Y), C(Y)NR, SONR, SO2NR, CR(R')NR, NRC(Y), NRSO, NR SO2, NRCR(R'), triazolyl, triazolyl-NR, triazolyl-CR(R'), NR-triazolyl, and CR(R')-triazolyl; each of q and s is independently selected from 0 and 1 ; r is independently selected from 0, 1 , 2, 3 and 4, preferably 2; preferably with the proviso that at least one of q and s is 1 , more preferably both q and s are 1; preferably with the proviso that q + r + s ≥ 1, more preferably ≥ 2, most preferably ≥ 3; n is independently selected from 0, 1 , 2, 3, and 4, preferably 3;
R2 is represented by R2a-(CR(R’))p-C(Y)-, or R2 and the group RN- form together a residue represented by R2a-(G4)v-(CR(R’))u-(G3)t-;
R2a is a 6- to 10-membered aromatic group, 5- to 10-membered heteroaromatic group having up to 5, preferably up to 3, heteroatoms independently selected from N, O and S and optionally substituted by C1 -4alkyl, or a group represented by C6-10 aryl-NR-C(Y)-N(R)- C6-10aryl-, wherein R2a is optionally substituted with one or more substituents preferably represented by R4 wherein;
G3 is independently selected from C(Y)NR, SONR, SO2NR, CR(R')NR, triazolyl, triazolylCR(R'), and CR(R')triazolyl;
G4 is independently selected from C(Y), NRC(Y), NRSO, NRSO2, NRCR(R'), C(Y)NR, SONR, SO2NR, CR(R')NR, triazolyl, NRtriazolyl, triazolylNR, CR(R')triazolyl, and triazolyl CR(R'), each of t and v is independently 0 or 1 ; u is independently selected from 0, 1 , 2, 3 and 4, preferably 3 preferably with the proviso that at least one of t and v is 1 , more preferably both t and v are 1; preferably with the proviso that t + u + v ≥ 1 , more preferably ≥ 2, most preferably ≥ 3; and p is independently 1 , 2, 3 or 4, preferably 1 or 2, more preferably 1 ; wherein one or more occurrence of CR(R’) may be optionally replaced by a group independently selected from O, S, C(Y) and NR, with the proviso that no two O atoms are adjacent to each other; each occurrence of Y is independently selected from O, S, NR and CR(R’); each R3 and R4 is independently selected from: NH2, OH, COOH, COOR, C1- 6 alkyl, C 1 -6haloalkyl, O(C1- 6 alkyl), O(C1- 6 haloalkyl), O(C2-6 alkenyl), C1- 6 heteroalkyl, NO2, C(O)NH2, C(O)NR(R’), CN, OXO and halogen, wherein R3 and R4 each independently may optionally form together with any CR(R’) a 4- to 7- membered carbocyclic or heterocyclic ring; and each occurrence of R and R’ is independently H or selected from C1- 6 alkyl , O( C1- 6 alkyl ), C3-10 cycloalkyl, O(C3-10 cycloalkyl), S(C3-10 cycloalkyl), C2-6 alkenyl, C2-6 alkynyl, C1 -6 heteroalkenyl, C1 -6 heteroal kynyl, C3-10 cycloalkenyl, C1 -10 cycloheteroalkenyl, C6-10 aryl, C1-
10 heteroaryl, (C6-10 aryl)C1 -6 alkyl and (C1 -10 heteroaryl)C1 -6 alkyl, each of which can be optionally substituted with from 1 to 3 substituents selected from C1- 6-alkyl, OH, oxo and halogen, or R and R’ together represent oxo. The compound of aspect 1 , represented by the following formula:
Figure imgf000078_0001
wherein RB represents R2a-(CR(R’))p-C(Y)-N(R)- or R2a-(G4)v-(CR(R’))u-(G3).,v- A compound, its individual diastereoisomers, its hydrates, its solvates, its crystal forms, its individual tautomers or a pharmaceutically acceptable salt thereof, wherein the compound structure comprises at least one group A independently represented by the following structure:
Figure imgf000079_0001
wherein: a and b are each 0 or 1 , wherein a + b is at least 1 , preferably wherein a and b are each 1 ;
R1 is represented by -C(Y)-R1 a-SO2NR(R’);
R1 a is independently a 5-membered heteroaromatic group having up to 3 heteroatoms independently selected from N, O and S, and wherein the heteroaromatic group is substituted, in addition to SO2NR(R’), by one or more substituents R^;
R2 is represented by R2a-(CR(R’))p-C(Y)-;
R2a is a 6- to 10-membered aromatic group, and is optionally substituted with one or more substituents R4; and p is independently 1 , 2, 3 or 4, preferably 1 or 2, more preferably 1 ; wherein one or more occurrence of CR(R’) may be optionally replaced by a group independently selected from O, S and NR, with the proviso that no two O atoms are adjacent to each other; each occurrence of Y is independently selected from O, S, NR and CR(R’); each R3 and R4 is independently selected from: NH2, OH, COOH, COOR, C1- 6 alkyl, C1- 6 haloalkyl, O(C1- 6 alkyl ), O(C1- 6 haloalkyl), O(C2-6 alkenyl), C1- 6 heteroalkyl, NO2, C(O)NH2, C(O)NR(R’), CN, OXO and halogen, wherein R^ and R^ each independently may optionally form together with any CR(R’) a 4- to 7- membered carbocyclic or heterocyclic ring; and each occurrence of R and R’ is independently H or selected from C1- 6 -alkyl, O(C1- 6 alkyl ), C3-10 cycloalkyl, O( C3-10 cycloalkyl), S(C3-10 cycloalkyl), C2-6 alkenyl, C2-6 alkynyl, C1- 6 heteroalkenyl, C1- 6 heteroal kynyl, C3-10 cycloalkenyl, C1 -10 cycloheteroalkenyl, C6-10 aryl, C1-
10 heteroaryl, (C6-10 aryl)C1- 6 alkyl and (C1 -10 heteroaryl)C1- 6 alkyl, each of which can be optionally substituted with from 1 to 3 substituents selected from C1- 6-alkyl, OH, oxo and halogen. 4. A compound, its individual diastereoisomers, its hydrates, its solvates, its crystal forms, its individual tautomers or a pharmaceutically acceptable salt thereof, wherein the compound structure comprises at least one group A independently represented by the following structure:
Figure imgf000080_0001
wherein: a and b are each 0 or 1 , wherein a + b is at least 1 , preferably wherein a and b are each 1 ;
R1 is represented by -C(Y)-R1 a-SO2NR(R’);
R1 a is independently a 5-membered heteroaromatic group having up to 3 heteroatoms independently selected from N, O and S, and wherein the heteroaromatic group is substituted, in addition to SO2NR(R’), by one or more substituents R3;
R2 is represented by R2a-(CR(R’))p-C(Y)-;
R2a is a 6- to 10-membered aromatic group, and is optionally substituted with one or more substituents R4; and p is independently 1 or 2, preferably 1 ; each occurrence of Y is independently selected from O, S, NR and CR(R’); each R3 and R4 is independently selected from: NH2, OH, COOH, COOR, C1- 6 alkyl, C1- 6 haloalkyl, oxo and halogen; and each occurrence of R and R’ is independently H or selected from C1- 6 -alkyl, O(C1- 6 alkyl ), C3-10 cycloalkyl, O( C3-10 cycloalkyl), S(C3-10 cycloalkyl), C2-6 alkenyl, C2-6 alkynyl, C1- 6 heteroalkenyl, C1- 6 heteroal kynyl, C3-10 cycloalkenyl, C1 -10 cycloheteroalkenyl, C6-10 aryl, C1- 10 heteroaryl, (C6-10 aryl)C1- 6 alkyl and (C1-10 heteroaryl)C1- 6 alkyl, each of which can be optionally substituted with from 1 to 3 substituents selected from C1- 6 -alkyl, OH, oxo and halogen.
5. The compound of any of the preceding aspects, wherein group A is represented by the following formula:
Figure imgf000080_0002
6. The compound of any of the preceding aspects, wherein group A is represented by the following formula:
Figure imgf000081_0002
7. The compound of any of the preceding aspects, wherein: a and b are each 1 ;
R1 a is independently a 5-membered heteroaromatic group having up to 3 heteroatoms independently selected from N, O and S, preferably thiophene, and wherein the heteroaromatic group is substituted, in addition to SO2NR(R’), by 1 or 2 substituents R3;
R2a is a 6- to 10-membered aromatic group, preferably phenyl, substituted by 0, 1, 2 or 3 substituents R4; p is 1; each occurrence of Y is O; and/or each R3 and R4 is independently selected from OCH3, OCH2CH3, OCH2CH2CH3, OCH2(CH3)2, O-cyclopropyl, OCF3, OCF2CF3, COOH, COOCH3, NO2, CN, F, Cl, Br and I.
8. The compound of aspect 7, wherein each R^ and R^ is independently selected from F, Cl, Br and I.
9. The compound of any of the preceding aspects, wherein A is represented by the following structure A1 A2, or A3:
Figure imgf000081_0001
wherein: c is independently 1 or 2, preferably 1 ; d is independently 0, 1 , 2, 3, 4 or 5, preferably 2; W is independently selected from NR, O, S, S(O) and SO2, and is preferably S;
R3a is independently selected from F, Cl, Br and I, and is preferably Cl;
R3b is independently selected from F, Cl, Br, I and H, and is preferably H; and
R4a and R4b are each independently selected from OCH3, OCH2CH3, OCH2CH2CH3, OCH2(CH3)2, O-cyclopropyl, OCF3, OCF2CF3, COOH, COOCH3, NO2, CN, F, Cl, Br and I, and are each preferably Cl or OCH3. The compound of any of the preceding aspects, wherein A is represented by the following structure A4
Figure imgf000082_0002
The compound of aspect 9 or 10, wherein each R3 and R4 is independently selected from F, Cl, Br and I. The compound of any of the preceding aspects, wherein A is represented by the following structure A-1:
Figure imgf000082_0003
The compound of any of the preceding aspects, wherein A is represented by the following structure A-5:
Figure imgf000082_0001
The compound of any of aspects 1 to 8, wherein A is represented by the following structure A11 ,
A12, A13 or A14.
Figure imgf000083_0001
wherein: c is independently 1 or 2, preferably 1 ; d is independently 0, 1 , 2, 3, 4 or 5, preferably 1 ;
W is independently selected from NR, O, S, S(O) and SO2, and is preferably S;
R3a is independently selected from F, Cl, Br and I; R3b is independently selected from F, Cl, Br, I and H, and is preferably H; and
R4C is independently selected from OCH3, OCH2CH3, OCH2CH2CH3, OCH2(CH3)2, O- cyclopropyl, OCF3, OCF2CF3, COOH, COOCH3, NO2, CN, F, Cl, Br and I, and is preferably NO2; and
R4d is independently selected from H, OCH3, OCH2CH3, OCH2CH2CH3, OCH2(CH3)2, O- cyclopropyl, OCF3, OCF2CF3, COOH, COOCH3, NO2, CN, F, Cl, Br and I, and is preferably H. The compound of any of the preceding aspects, wherein A is represented by the following structure A-4:
Figure imgf000084_0001
16. The compound of any of the preceding aspects, wherein A is represented by any of the following structures:
Figure imgf000084_0002
17. The compound of any of the preceding aspects, wherein A is represented by the following structure:
Figure imgf000084_0003
18. The compound of any of the preceding aspects, wherein A is represented by the following structure:
Figure imgf000085_0003
wherein each of W1, W3, W4 is independently selected from CH, S, O, and N, wherein at least one is S or O, preferably wherein W1 is S or O, more preferably wherein W1 is S and each of and is N. 19. The compound of any of the preceding aspects, wherein A is represented by the following structure:
Figure imgf000085_0001
20. The compound of any of the preceding aspects, wherein A is represented by the following structure A-3:
Figure imgf000085_0002
21. The compound of any of the preceding aspects, wherein A is represented by the following structure:
Figure imgf000086_0002
22. The compound of any of the preceding aspects, wherein A is represented by the following structure:
Figure imgf000086_0003
wherein each of W1, W3, W4 is independently selected from CH, S, O, and N, wherein at least one is S or O, preferably wherein W1 is S or O, more preferably wherein W1 is S and each of and W4 is N.
23. The compound of any of the preceding aspects, wherein A is represented by any of the following structures:
Figure imgf000086_0001
24. The compound of any of the preceding aspects, wherein A is represented by the following structure
A-2:
Figure imgf000087_0002
25. The compound of any of the preceding aspects, wherein each R3 is halogen, and each R4 is independently selected from O(C1- 6 alkyl ), NO2 and halogen.
26. The compound of any of the preceding aspects, wherein R1 a is substituted, in addition to SO2NR(R’), by one group R3, and R2a is substituted by one or two groups R4.
27. The compound of any of the preceding aspects, wherein R2a is phenyl substituted by two groups R4 at positions 4 and 2 on the phenyl ring or wherein R4a and R4b are, respectively, at positions 4 and 2 of the phenyl ring, each relative to the attachment point to CR(R’).
28. The compound of any of the preceding aspects, wherein R1 a is substituted by one group R3 which is halogen, and R2a is substituted by one or two groups R4 each independently selected from O(C1- 6 alkyl), NO2 and halogen.
29. The compound of any of the preceding aspects, wherein R3 is Cl, and R4 is selected from OCH3, NO2, and Cl.
30. The compound of any of the preceding aspect, wherein R3a is Cl, R3b is H, R4a is Cl or OCH3, and R4b is Cl.
31. The compound of any of the preceding aspects, wherein R3a is Cl, R3b is H, R4c is NO2, and R4d is Cl.
32. The compound of any of the preceding aspects, wherein R1 is represented by any one of the structures
Figure imgf000087_0001
33. The compound of any of the preceding aspects, wherein R1 is represented by the structure
Figure imgf000088_0003
34. The compound of any of aspects 1 to 31 , wherein R1 is represented by any one of the structures:
Figure imgf000088_0001
35. The compound of any of aspects 1 to 31, wherein R1 is represented by the structure
Figure imgf000088_0002
36. The compound of any of the preceding aspects, wherein R2 is represented by a structure selected from:
Figure imgf000089_0001
37. The compound of any of the preceding aspects, wherein R2 is represented by
Figure imgf000089_0003
38. The compound of any of aspects 1 to 36, wherein R2 is represented by
Figure imgf000089_0004
39. The compound of any of aspects 1 to 36, wherein R2 is represented by
Figure imgf000089_0005
40. The compound of any of the preceding aspects, wherein R2 and the group RN- form together a residue RB represented by any of the following structures:
Figure imgf000089_0002
Figure imgf000090_0001
41. The compound of any of the preceding aspects, wherein R2 and the group RN- form together a residue RB represented by the following structure:
Figure imgf000090_0002
42. The compound of any of the preceding aspects, wherein one or more occurrence of the group -SO2NH2 is replaced by a group represented by -OSO2NH2- 43. The compound of any one of the preceding aspects, wherein the compound is represented by the following Formula I, la, or lb,
Figure imgf000090_0003
wherein each A is independently defined as in any one of the preceding aspects;
B is a single bond or an optionally substituted C1- 50 aliphatic group, in which optionally one or more carbon atoms can be replaced by heteroatom, a C3-12 carbocyclic or a C1- 12 heterocyclic group, and which can be saturated or optionally contain one or more double or triple bonds; and each C is an atom, a molecule or a particle, and/or is a therapeutic or diagnostic agent. 44. The compound of aspect 43, wherein B is a single bond or is represented by any of the following general Formulae II— V, lla-Va or Ilb-Vb:
Figure imgf000091_0001
wherein each x is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10; each y is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10; each z is 0, 1 , 2, 3 or 4, preferably 1 ; with the proviso that in Formulae lla-Va and lIb— Vb, z and at least one of x and y is not 0;
* represents a point of attachment to a moiety A; • represents a point of attachment to a moiety C; and each of BS and BL is independently selected from alkylene, cycloalkylene, arylalkylene, heteroarylalkylene, heteroalkylene, heterocycloalkylene, alkenylene, cycloalkenylene, arylalkenylene, heteroarylalkenylene, heteroalkenylene, heterocycloalenkylene, alkynylene, heteroalkynylene, arylene, heteroarylene, aminoacyl, oxyalkylene, aminoalkylene, diacid ester, dialkylsiloxane, amide, thioamide, thioether, thioester, ester, carbamate, hydrazone, thiazolidine, methylene alkoxy carbamate, disulfide, vinylene, imine, imidamide, phosphoramide, saccharide, phosphate ester, phosphoramide, carbamate, dipeptide, tripeptide, tetrapeptide, each of which is optionally substituted. 45. The compound of any one of aspects 43 and 44, wherein B is represented by (Bs)x wherein: each x is selected from 0, 1, 2, 3, 4, 5, 6, 7, 8, 9 and 10; each BS is independently selected from the group consisting of alkylene, cycloalkylene, arylalkylene, heteroarylalkylene, heteroalkylene, heterocycloalkylene, alkenylene, cycloalkenylene, arylalkenylene, heteroarylalkenylene, heteroalkenylene, heterocycloalenkylene, alkynylene, heteroalkynylene, arylene, heteroarylene, aminoacyl, oxyalkylene, aminoalkylene, dlacld ester, dialkylsiloxane, amide, thioamlde, thioether, thioester, ester, carbamate, hydrazone, thiazolidine, methylene alkoxy carbamate, disulfide, vinylene, imine, imidamide, phosphoramide, saccharide, phosphate ester, phosphoramide, carbamate, dipeptide, tripeptide, tetrapeptide. 46. The compound of any one of aspects 43 to 45, wherein each BS and BL is independently selected from:
Figure imgf000092_0001
Figure imgf000093_0001
Figure imgf000094_0001
Figure imgf000095_0001
wherein in each of the above structures: each n is independently 0, 1 , 2, 3, 4, 5, 6, 7, or 8; each m is independently 0, 1 , 2, 3, or 4; each Rc, Rd, and Re is independently is selected from H, optionally substituted C1- 6 alkyl , (C3- C 10 carbocyclyl)C1- 6 alkyl , (C6-C10 aryl)C1- 6 alkyl , (C1-C10 heterocyclyl)C1- 6 alkyl , C2-6 alkenyl, C2-6 alkynyl, and C6-C10 aryl, in each of which optionally one or more of the carbon atoms can be replaced by heteroatoms; preferably selected from side-chain residues of proteinogenic or a non-proteinogenic amino acids; each occurrence of R and R’ is independently H or selected from C1- 6 -alkyl, O(C1- 6 alkyl ), S(C1-. 6-alkyl), C3-10 cycloalkyl, O(C3-10 cycloalkyl), S(C3-10 cycloalkyl), C2-6 alkenyl, C2-6 alkynyl, C1- 6 heteroalkenyl, C1- 6 heteroal kynyl, C3-10 cycloalkenyl, C1 -10 cycloheteroalkenyl, C6-10 aryl, C1 -10 heteroaryl, (C6-10 aryl)C1- 6 alkyl and ( C1 -10 heteroaryl)C1- 6 alkyl, each of which can be optionally substituted with from 1 to 3 substituents selected from C1- 6-alkyl, OH, oxo and halogen. each * represents a point of attachment for which the shortest path to a moiety A comprises less atoms than that for •; and each • represents a point of attachment for which the shortest path to a moiety C comprises less atoms than that for *, with the proviso that when n is > 1 and a respective point of attachment is indicated on any one of Rc, Rd and Re, then it can be independently present in one or more of the peptide monomeric units, preferably in one peptide monomeric unit most distant from the other point of attachment indicated in the respective structure, wherein each of the above structures optionally comprises a further attachment point to a moiety A or C.
47. The compound according to any one of the preceding aspects, wherein moiety B has one of the following structures:
(a) single bond, (BS)x,
Figure imgf000096_0001
Figure imgf000097_0001
wherein each of AA3, AA4, AA5, AA6, AA7, and AA8 represents a proteinogenic or non- proteinogenic amino acid, or is absent; wherein preferably: each proteinogenic or non-proteinogenic amino acid is preferably independently represented by one of the following structures:
Figure imgf000098_0002
and/or AA4 is an amino acid with a charged sidechain, and AA7 is an amino acid with an aliphatic sidechain; wherein more preferably: AA3 is selected from Asp, Glu, and Lys, or is absent; preferably Asp;
AA4 is selected from Arg, HomoArg, Lys, Asp, and Glu, or is absent; preferably Lys or Arg;
AA5 is selected from Asp, Glu, and Lys; preferably Asp;
AA6 is selected from Cys, Lys, Gly and Vai; preferably Cys or Lys;
AA7 is selected from Gly, Ala, Vai, Arg, lie, Pro; ; and AA8 is selected from Pro and citrulline (Cit); even more preferably according to one of the sequences shown in the below table:
Figure imgf000098_0003
or
(b) single bond,
Figure imgf000098_0001
Figure imgf000099_0001
Figure imgf000100_0001
Figure imgf000101_0001
Figure imgf000102_0001
Figure imgf000103_0001
Figure imgf000104_0001
Figure imgf000105_0002
48. The compound according to any one of the preceding aspects, which has one of the following structures, wherein -D represents -B-C as defined in any one of the preceding aspects:
Figure imgf000105_0001
Figure imgf000106_0001
Figure imgf000107_0001
wherein, unless otherwise specified, all groups and variables are defined as in any one of the preceding aspects. 49. The compound according to any one of the preceding aspects, each -D or -B-C is independently represented by any one of the following structures:
Figure imgf000107_0002
Figure imgf000108_0001
Figure imgf000109_0001
50. The compound according to any one of the preceding aspects, each -D or -B-C is independently represented by any one of the following structures:
Figure imgf000109_0002
Figure imgf000110_0001
51. The compound according to any one of the preceding aspects, wherein the moiety C is a chelating agent group suitable for radiolabeling; a radioactive group comprising a radioisotope; a chelate of a radioactive isotope with a chelating agent; a fluorophore group; a cytotoxic and/or cytostatic agent; immunomodulator agent; or a protein, wherein preferably:
(a) the chelating agent group suitable for radiolabeling is selected from sulfur colloid, diethylenetriaminepentaacetic acid (DTPA), ethylenediaminetetraacetic acid (EDTA), 1,4,7,10- tetraazacyclododecane-N,N',N",N",-tetraacetic acid (DOTA), 1,4,7-triazacyclononane-N,N',N"- triacetic acid (NOTA), 1,4,8,11-tetraazacyclotetradecane-N,N',N",N",-tetraacetic acid (TETA), iminodiacetic acid, bis(carboxymethylimidazole)glycine, 6-Hydrazinopyridine-3-carboxylic acid (HYNIC),
Figure imgf000110_0002
Figure imgf000111_0001
has a structure according to the following formula:
Figure imgf000111_0002
wherein: n is 0, 1 , 2, 3, 4 or 5; preferably 1 ; R1e is independently H, COOH, aryl COOH or heteroaryl COOH; preferably COOH;
R2e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; each R3e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; R4e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and X is O, NH or S; preferably O; or has a structure according to the following formula:
Figure imgf000112_0001
wherein: n is 0, 1 , 2, 3, 4 or 5; preferably 1
R1f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
R2f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
R3f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and X is O, NH or S; preferably O;
(b)
Figure imgf000112_0002
(c) the chelate of a radioactive isotope is a chelate of an isotope listed under (b) above and/or with a chelating agent listed under (a) above; or moiety C is a group selected from any of the following structures:
Figure imgf000112_0003
wherein X is CH, O, N or S, preferably CH;
Figure imgf000113_0001
wherein M is a radioactive isotope, preferably selected among the list underr (b) above; more preferably:
Figure imgf000113_0002
Figure imgf000114_0001
(d) the fluorophore group is selected from a xanthene dye, acridine dye, oxazine dye, cyanine dye, styryl dye, coumarine dye, porphine dye, fluorescent metal-ligand-complex, fluorescent protein, nanocrystals, perylene dye, boron-dipyrromethene dye and phtalocyanine dye, preferably selected from the following structures:
Figure imgf000114_0002
Figure imgf000115_0001
(e) the cytotoxic and/or cytostatic agent is selected from chemotherapeutic agent selected from the group consisting of topoisomerase inhibitors, alkylating agents, antimetabolites, antibiotics, mitotic disrupters, DNA intercalating agents, DNA synthesis inhibitors, DNA-RNA transcription regulator, enzyme inhibitors, gene regulators, hormone response modifiers, hypoxia-selective cytotoxins, epidermal growth factor inhibitors, anti-vascular agents and a combination of two or more thereof, preferably selected from the following structures:
Figure imgf000116_0001
Figure imgf000117_0001
Figure imgf000118_0001
Figure imgf000119_0001
Figure imgf000120_0001
Figure imgf000121_0002
moiety C is an auristatin derivative, preferably having a structure according to the following formula:
Figure imgf000121_0001
wherein:
R1d is independently H or C1 -C6 alkyl; preferably H or CH3;
R2d is independently C1 -C6 alkyl; preferably CH3 or IPr;
R3d is independently H or C1 -C6 alkyl; preferably H or CH3; R4d is independently H, C1 -C6 alkyl, COO(C1 -C6 alkyl), CON(H or C1 -C6 alkyl), C3-C10 aryl or
C3-C10 heteroaryl; preferably H, CH3, COOH, COOCH3 or thiazolyl;
R5d is independently H, OH, C1 -C6 alkyl; preferably H or OH; and
R6d is independently C3-C10 aryl or C3-C10 heteroaryl; preferably optionally substituted phenyl or pyridyl, wherein preferably, moiety C is derived from MMAE or MMAF; or a topoisomerase inhibitor; preferably camptothecin (CPT) or a derivative thereof; more preferably derived (e.g., by replacing a hydrogen atom) from topotecan, irinotecan, silatecan, cositecan, exatecan, lurtotecan, gimatecan, belotecan, rubitecan, deruxtecan, DXd; even more preferably exatecan; even more preferably
Figure imgf000122_0001
(f) the immunomodulator agent is selected from molecules known to be able to modulate the immune system, such as ligands of CD3, CD25, TLRs, STING, 4-1 BBL, 4-1 BB, PD-1, mTor,
PDL-1, NKG-2D IMiDs, wherein ligands can be agonists and/or antagonist; or
(g) the protein is selected from cytokines, such as IL2, IL10, IL12, IL15, TNF, Interferon Gamma, or is an antibody.
52. The compound according to any one of the preceding aspects, wherein: (a) A-B is represented by a structure selected from:
Figure imgf000123_0001
Figure imgf000124_0001
Figure imgf000125_0001
Figure imgf000126_0001
Figure imgf000127_0001
Figure imgf000128_0001
Figure imgf000129_0001
Figure imgf000130_0001
(b) C is represented by a structure selected from:
Figure imgf000130_0002
Figure imgf000131_0001
Figure imgf000132_0001
5
Figure imgf000133_0001
Figure imgf000134_0001
wherein the combination of A-B and C is preferably selected such that the covalent bond — connecting B with C is represented by S— S, S— C, C— S, C(O)— Ra, C(O)— N, C(O)— O, C(O)— N, N— C(O), N— C(O)O, N— C(S) or OC(O)— N. The compound of any of the preceding aspects, wherein moiety A is selected from A-1 to A-5. The compound of an of the preceding aspects, wherein moiety B is selected from B-1 to B-21. The compound of an of the preceding aspects, wherein moiety C is selected from C-1 to C-31. A compound having a structure selected from those listed in Table 1, Table 3.1, Table 3.2, FIG. 30, FIG. 31, FIG. 33, or FIG. 34, its individual diastereoisomers, its hydrates, its solvates, its crystal forms, its individual tautomers or a pharmaceutically acceptable salt thereof. A pharmaceutical composition comprising the compound according to any one of the preceding aspects, and a pharmaceutically acceptable excipient. The compound or the pharmaceutical composition according to any one of the preceding aspects for use in:
(a) a method for treatment of the human or animal body by surgery or therapy or a diagnostic method practiced on the human or animal body; or
(b) a method for therapy or prophylaxis of a subject suffering from or having risk for a disease or disorder; or
(c) a method for guided surgery practiced on a subject suffering from or having risk for a disease or disorder; or
(d) a method for diagnosis of a disease or disorder, the method being practiced on the human or animal body and involving a nuclear medicine imaging technique, such as Positron Emission Tomography (PET) or Single Photon Emission Computed Tomography (SPECT); or
(e) a method for targeted delivery of a therapeutic or diagnostic agent to a subject suffering from or having risk for a disease or disorder, 59. The compound or the pharmaceutical composition for use according to aspect 58, wherein the disease or disorder is independently selected from hypoxia-related diseases such as cancer, preferably wherein the cancer is selected from the group consisting of breast cancer, pancreatic cancer, colon cancer, multi-drug resistant colon cancer, rectal cancer, colorectal cancer, metastatic colorectal cancer, lung cancer, non-small cell lung cancer, head and neck cancer, ovarian cancer, hypopharynx cancer, nasopharynx cancer, larynx cancer, bladder cancer, cholangiocarcinoma, clear cell renal carcinoma, glioma, astrocytoma, cervix cancer and kidney cancer.
EXAMPLES
Example 1 - Synthesis of derivatives
1.1 General Remarks
Liquid-Chromatography/Mass-Spectrometry (LC/MS) spectra were recorded on a Waters Acquity UPLC H- Class system coupled to an ESI-ToF-MS (Waters Xevo G2XS Qtof) which was equipped with a Waters Acquity BEH C18 column (2.1 x 50 mm, 130 A, 1.7 pm). A gradient of eluent A (MilliQ water with 0.1% formic acid) and eluent B (acetonitrile with 0.1% formic acid) was applied at 40 °C column temperature and a flow rate of 0.6 mL/min (5% to 80% B in 6 min).
Reversed-phase medium-pressure liquid chromatography (MPLC)
Small organic molecules that could be produced at higher quantities (>10 mg) were purified by reversed- phase medium-pressure liquid chromatography (BUCHI) on a C18 40 μM irregular 12 g column (BUCHI, #145152103) using mQ millipore water 0.1% formic acid (FA) (eluent A) and acetonitrile 0.1% FA (eluent B) as mobile phase at following gradient: 0-5 min 98% A, 5-45 min 98% to 0% A, 45-50 min 0% A, 50-50.1 min 0% to 98% A and 50.1-55 min 98% A. The flow rate was set to 30 mL/min.
Reversed-phase high-pressure liquid chromatography (HPLC)
Final products and conjugates were purified with a semi preparative reversed-phase high-pressure liquid chromatography (RP-HPLC) on an Agilent 1200 Series RP-HPLC with a PDA UV detector. The system was equipped with a Synergi 4 pm, Polar-RP 80 A 10 x 150 mm C18 column using flow rate of 5 mL/min with the following gradient of eluent A (mQ millipore water 0.1% TFA) and eluent B (acetonitrile with 0.1% TFA): 0-15 min 90% to 0% A, 15-16 min 0% A, 16-17 min 0% to 90% A, 17-18 min 90% A.
1.2 Solid phase synthesis
General solid-phase synthesis procedures
Solid-phase synthesis was performed with preloaded Fmoc-Lys(Boc)-Wang resin (200-400 mesh, 0.5 mmol/g; Bachem, #4003241.0005). In general, resin was swollen for 30 min in dimethylformamide (DMF) previous to any reaction steps. Incubations were performed in 10 mL reaction columns (CEM Corporation, #32.276) on a rotator mixer (Reax 2, Heidolph Instruments GmbH & Co. KG) at room temperature.
Fmoc deprotection
Resin was incubated for 2 x 15 min with 20% piperidine in DMF. After the deprotection, the resin was washed 5-10 times with DMF to remove residual piperidine.
Mini cleavage for LC-MS analysis
A small portion of resin was transferred to an Eppendorf tube and incubated with 20 μL trifluoracetic acid (TFA) for 15 min at room temperature. The cleavage was quenched by addition of 100 μL DMF to centrifuge the suspension (1 min at 10’000 ref) previous to LC-MS analysis.
Azide reduction
After swelling in DMF, the resin was incubated with a solution of trimethyl phosphine (5 eq.) in THF:water (10% water in THF). The reaction proceeded for 2 h at room temperature to subsequently wash the beads 10 times with DMF.
Amide coupling
Typically, the acid (2 eq.), O-(7-azabenzotriazol-1-yl)-N,N,N',N'-tetramethyluronium hexafluorophosphate (HATU, 1.9 eq.) and diisopropylethylamine (DIPEA, 4 eq.) were dissolved in DMF and added to the resin bearing chemical moieties with a free amino group. After incubation for 4 h, the resin was subsequently washed five times with DMF. Coupling efficiency could be monitored by LC-MS analysis (mini cleavage).
Resin cleavage and purification
Cleavage solution was prepared as following: 95% trifluoracetic acid (TFA), 2.5% water and 2.5% triisopropylsilane (TIPS). Where specified, 2.5% thioanisol and 2.5% m-cresol were added as scavengers. Highest yields were obtained when performing three consecutive cleavages (1 h at room temperature each). Cleavage fractions were combined and either directly purified via RP HPLC or precipitated in diethyl ether for subsequent purification (see below).
Peptide precipitation
For peptide structures, products could be precipitated from the cleavage solution by adding 5-10 volumes ice-cold diethyl ether. Precipitation proceeded for 30 min at -20 °C to obtain the peptide as pellet by centrifugation (3200 ref, 5 min, 4 °C). The crude was dissolved in watenacetonitrile (1 :1) to be purified by reversed-phase chromatography. 1 .2.1 Synthesis of intermediates 11-14 (intermediate 14 = compound C9)
Figure imgf000137_0001
Preloaded Fmoc-Lys(Boc)-Wang resin (1 g scale) was swollen for subsequent Fmoc deprotection. The tripeptide Lys-Asp-βAla-NH2 was generated by iterative amide coupling and Fmoc deprotection following the general procedure, however, doubling the equivalents for amide couplings (4 eq. acid, 3.9 eq. HATU,
8 eq. DIPEA). The order of loading was: N-(fluorenylmethoxycarbonyl)-N6-(tert-butoxycarbonyl)-L-lysine (preloaded), N-(fluorenylmethoxycarbonyl)-L-aspartic acid tert-butyl ester, N-(fluorenylmethoxycarbonyl)- beta-alanine. The tripeptide linker synthesized on resin was split into four 250 mg batches (corresponding to 0.125 mmol loading capacity each). Each batch was coupled with one isomer of the proline derivative (RR, SS, RS, SR) following the standard protocol for amide couplings. After Fmoc deprotection, I6 was coupled at lower equivalents (47 mg, 0.138 mmol, 1.1 eq. acid; 47.5 mg, 0.125 mmol, 1 eq. HATU and 174 μL DIPEA, 1 mmol, 8 eq. DIPEA), leaving the reaction overnight. Subsequent azide reduction was followed by coupling of 2-(2,4-dichlorophenyl)acetic acid, using 6 equivalents of the acid (154 mg, 0.75 mmol), 5 equivalents HATU (238 mg, 0.625 mmol) and 8 equivalents DIPEA (174 μL, 1 mmol). The reaction proceeded overnight at room temperature. Finally, 11 , 12, 13 and I4 were cleaved from the resin, precipitated with ice-cold diethyl ether and purified via RP-HPLC, yielding the products as white solids: 11 (SS, 5.3 mg, 5% yield), I2 (SR, 4.1 mg, 4% yield), I3 (RS, 6.2 mg, 6% yield), I4 = C9 (RR, 7.8 mg, 7% yield), m/z calculated for C31 H39Cl3N7O1 1S2 [M+H]+: 854.1209, detected (TOF MS ES+): 854.0676, 855.1398 (11);
854.0635, 859.1329 (I2); 854.1383, 856.1353 (I3); 854.1379 (I4 = C9).
1 .2.2 Synthesis of intermediate I5
Figure imgf000138_0001
The tripeptide linker Lys-Asp-βAla-NH2 was synthesized on resin (125 mg, 0.06 mmol) as reported above and reacted with an acetazolamide derivative (4-oxo-4-[(5-sulfamoyl-1 ,3,4-thiadiazol-2-yl)amino]butanoic acid, 73 mg, 0.21 mmol, 4 eq.) in the presence of HATU (81 mg, 0.21 mmol, 4 eq.) and DIPEA (300 μL, 1 .72 mmol, 8 eq.) in DMF. After 4 h at room temperature, the resin was washed with DMF for subsequent cleavage of I5 from the resin to allow purification by RP-HPLC yielding I5 as white solid (2.7 mg, 7.6% yield), m/z calculated for C 19H31 N8O 10S2 [M+H]+: 595.1599, detected (TOF MS ES+): 595.1688.
1.3 Solution phase synthesis
1 .3.1 Synthesis of intermediate I6
Figure imgf000138_0002
Fisher esterification, Boc-protection and ester hydrolysis were performed without purification of reaction intermediates. 500 mg (2.07 mmol, 1 eq.) of 5-chloro-2-sulfamoylthiophene-3-carboxylic acid was dissolved in 25 mL methanol and 2.6 mL 4 M HCI in dioxane (10.4 mmol, 5 eq.). The solution was refluxed overnight to receive the crude after evaporating the solvent under reduced pressure. The residue was dissolved in 20 mL dichloromethane (DCM) to which 569 μL bis(2-methyl-2-propanyl)dicarbonate (540 mg, 2.47 mmol, 1.2 eq.), 101 mg N,N-dimethylpyridin-4-amine (DMAP; 0.83 mmol, 0.4 eq.) and 342 μL triethylamine (TEA, 2.47 mmol, 1.2 eq.) were added. After 3 h at room temperature, LC-MS analysis revealed completion of the reaction. The solvent was evaporated under reduced pressure and the crude was taken up in 20 mL waterTHF (1 :1). Addition of 1.3 mL of 8 M NaOHaq (10.4 mmol, 5 eq.) initiated the ester hydrolysis which proceeded for 3 h at room temperature. The solution was neutralized with 1 M HCIaq and the solvent was evaporated. The crude was dissolved in acetonitrile:water (1 :1) and purified by RP-MPLC to obtain I6 as white solid (320 mg, 45% yield), m/z calculated for C10H11 CINO6S2 [M-H]-: 339.9722, detected (TOF MS ES-): 339.9702.
1 .3.2 Synthesis of intermediate I7
Figure imgf000139_0001
2-(2,4-Dichlorophenyl)acetic acid (5 mg, 23 μmol, 1 eq.) was dissolved in DMF and pre-activated for 10 min by the addition of EDC (4 μL, 23 μmol, 1 eq.), HOBt (3 mg, 23 μmol, 1 eq.) and DIPEA (15.9 μL, 91 μmol, 4 eq.). 1-Tert-butyl 2-methyl (2R,4R)-4-amino-1 ,2-pyrrolidinedicarboxylate hydrochloride (6.4 mg, 23 μmol, 1 eq.) was added to the pre-activation solution and incubated for 4 h at room temperature. The solvent was evaporated and the residue taken up in 200 μL TFA. After 1 h at room temperature, TFA was evaporated under reduced pressure, the residue taken up in water and lyophilized to continue with the coupling to I6 (7.7 mg, 23 μmol, 1 eq.) under the same conditions as described for the first coupling step. Boc deprotection in TFA (200 μL) for 1 h at room temperature was followed by evaporation of TFA and neutralization with 1 M NaOHaq. Subsequently, ester hydrolysis was performed for 2 h at room temperature with NaOH (230 μL 1 M NaOHaq, 230 μmol, 10 eq.) in 500 μL water:THF (1 :1). After neutralization with 1 M HCIaq, the solvent was evaporated under reduced pressure to purify the crude by RP-HPLC. The product was lyophilized resulting in I7 as a white solid: RR (3.9 mg, 32% yield), m/z calculated for C18H17CI3N3O6S2 [M+H]+: 539.9619, detected (TOF MS ES+): 539.9050, 540.9713.
1 .3.3 Synthesis of intermediate I8
Figure imgf000139_0002
1 -tert-butyl 2-methyl (2R,4R)-4-amino-1 ,2-pyrrolidinedicarboxylate hydrochloride (5.5 mg, 19.6 μmol, 1 eq.) was dissolved in 500 μL DCM to perform the acetylation reaction by adding acetic acid anhydride (18.5 μL, 196 μmol, 10 eq.) and TEA (13.7 μL, 98.3 μmol, 5 eq.). After 1 h at room temperature, the solvent was evaporated and the dry residue taken up in 200 μL TFA to proceed with Boc deprotection for 1 h at room temperature. TFA was evaporated under reduced pressure and the residue taken up in 10 mL water:acetonitrile (1 : 1 ) to lyophilize the crude overnight. I6 (6.7 mg, 19.6 μmol, 1 eq.) was pre-activated for 10 min at room temperature with EDC (3.5 μL, 19.8 μmol, 1 eq.), HOBt (2.6 mg, 19.2 μmol, 1 eq.) and DIPEA (13.7 μL, 78.6 μmol, 4 eq.) in DMF before adding the solution to the acetylated intermediate. The coupling was left for 4 h at room temperature which was followed by Boc deprotection in TFA and saponification with NaOH (200 μL 1 M NaOHaq, 200 μmol, 10 eq.) in 400 μL water:THF (1 :1). The hydrolysis mixture was neutralized with 1 M HCIaq to evaporate the solvent and purify the product via RP- HPLC, yielding I8 as white solid (2.4 mg, 31% yield), m/z calculated for C 12H15CIN3O6S2 [M+H]+: 396.0085, detected (TOF MS ES+): 396.0050.
1 .3.4 Synthesis of intermediate I9
Figure imgf000140_0002
Pre-activation of 2-(2,4-dichlorophenyl)acetic acid (3.9 mg, 17.6 μmol, 1 eq.) was performed using EDC (3.1 μL, 17.6 μmol, 1 eq.), HOBt (2.4 mg, 17.8 μmol, 1 eq.) and DIPEA (12.2 μL, 70 μmol, 4 eq.) in DMF for 10 min at room temperature, to initiate coupling by the addition of 1 -tert-butyl 2-methyl (2R,4R)-4-amino- 1 ,2-pyrrolidinedicarboxylate hydrochloride (4.9 mg, 17.5 μmol, 1 eq.). After 4 h at room temperature, the solvent was evaporated and the residue dissolved in water:THF (1 :1) comprising NaOH (180 μL 1 M NaOHaq, 180 μmol, 10 eq.). The esterification proceeded for 2 h at room temperature and was stopped by neutralization of the solution with 1 M HCIaq and evaporation of the solvent. The crude was purified by RP- HPLC resulting in I9 as white solid (2.7 mg, 39% yield), m/z calculated for C15H 17CI2N2O4 [M+H]+: 359.0560, detected (TOF MS ES+): 359.0451 .
1 .3.5 Synthesis of intermediate 110
Figure imgf000140_0001
Tert-butyl N-[2-[2-(2-aminoethoxy)ethoxy]ethyl]carbamate (50 mg, 0.20 mmol, 1 eq.) was dissolved in 5 mL DMF and mixed with FITC (78 mg, 0.20 mmol, 1 eq.) and DIPEA (140 μL, 0.80 mmol, 4 eq.) in DMF for 1 h at room temperature. The solvent was evaporated under reduced pressure and the residue taken up in 2 mL TFA. After 30 min at room temperature, TFA was evaporated and the crude purified by RP-MPLC. The product 110 was obtained as yellow solid (36.8 mg, 34% yield), m/z calculated for C27H28N3O7S [M+H]+: 538.1642, detected (TOF MS ES+): 538.1675. 1 .3.6 Synthesis of compounds C1, C3, C5 and C7
Figure imgf000141_0002
11 , 12, 13 and I4 (2 mg, 2.3 μmol, 1 eq.) were dissolved separately in 200 μL DMSO. After addition of 1 .1 mg NHS-Fluorescein (2.3 μmol, 1 eq.) and 1 μL DIPEA (5.7 μmol, 2.5 eq.) the mixtures were incubated in a shaker incubator for 1 h at room temperature. The crudes were purified by RP-HPLC and the product fractions lyophilized, resulting in a yellow powder: C1 (SS, 1.2 mg, 43% yield), C3 (SR, 0.71 mg, 29% yield), C5 (RS, 0.70 mg, 29% yield), C7 (RR, 0.90 mg, 32% yield), m/z calculated for C52H49Cl3N 7O17S 2 [M+H]+: 1212.1686, detected (TOF MS ES+): 1212.1664, 1213.2268 (C1); 1212.2241 , 1214.2233 (C3), 1212.2245, 1214.2238 (C5); 1212.2231 , 1214.2224 (07). 1 .3.7 Synthesis of compounds C2, C4, C6 and C10
Figure imgf000141_0001
Eppendorf tubes were charged separately with 11, 12, 13 and I4 (72 pg in 72 μL DMSO, 0.084 μmol, 1 eq.) to add 0.3 μL DIPEA (1.7 μmol, 20 eq.). Upon addition of 50 μL IRDye® 750 NHS ester (LI-COR Biosciences) pre-dissolved in DMSO (100 pg, 0.084 μmol, 1 eq.), the reaction proceeded overnight at room temperature in a shaker incubator. The product was isolated by RP-HPLC, lyophilized (green solid) and dissolved in 100 μL sterile PBS to measure the concentration by Nandrop (absorption at 4 = 756 nm, extinction coefficient = 260’000 M-1 cm-1 ): C2 (SS, 0.035 μmol, 42% yield), C4 (SR, 0.040 μmol, 48% yield), C6 (RS, 0.028 μmol, 33% yield), C10 (RR, 0.033 μmol, 39% yield), m/z calculated for C80H97CI3N9O24S6 [M+H]+: 1864.4031 , detected (MALDI-TOF MS +): 1864.40, 1866.41 (C2); 1864.39, 1866.39 (C4); 1864.40, 1866.40 (C6); 1864.41 , 1866.41 (C10).
1 .3.8 Synthesis of compounds C8, C12 and C13
Figure imgf000142_0002
C8, C12 and C13 were synthesized according to the general procedure of acid pre-activation with EDC (1 eq.), HOBt (1 eq.) and DIPEA (4 eq.) in DMF for 10 min at room temperature, followed by addition of 110 (1 eq.). After 1 h at room temperature, the mixtures were purified by RP-HPLC, resulting in the products as yellow solids: C8 (1.1 mg, 53% yield), C12 (0.6 mg, 21% yield), C13 (0.8 mg, 38% yield).
C8 m/z calculated for C45H42CI3N6O12S3 [M+H]+: 1059.1083, detected (TOF MS ES+): 1059.1521 , 1063.1473.
C12 m/z calculated for C39H40CIN6O12S3 [M+H]+: 915.1549, detected (TOF MS ES+): 915.1887, 917.1851.
C13 m/z calculated for C42H42Cl2N5O10S [M+H]+: 878.2024, detected (TOF MS ES+): 878.2299, 880.2289. 1 .3.9 Synthesis of compound C11
Figure imgf000142_0001
Figure imgf000143_0001
An Eppendorf tube was charged with 14 (0.5 mg, 0.58 μmol, 1 eq.), DOTA-GA anhydride (0.27 mg, 0.58 μmol, 1 eq.), DIPEA (1 μL, 5.8 μmol, 10 eq.), DMAP (2.9 μL 100 mM in DMSO, 0.29 μmol, 0.5 eq.) and 95 μL DMSO. The mixture was incubated for 3 h at room temperature and the crude purified by RP-HPLC to receive the product C11 as white solid (0.30 mg, 39% yield), m/z calculated for C50H69Cl3N11 O20S2 [M+H]+: 1312.3222, detected (TOF MS ES+): 1312.3872, 1314.3866.
Figure imgf000143_0002
C11 was dissolved in MilliQ water with 4% DMSO to reach a 1 mM concentration of which 39 μL (39 nmol,
1 eq.) were diluted with 74 μL 1 M acetate buffer pH 4.5. After addition of 4.2 μL [ 177Lu]LuCl3 (11 MBq, ITM Radio Pharma) the mixture was heated at 95 °C for 10 min and passively cooled down to room temperature to allow complexation. [177Lu]Lu-C11 was diluted with 663 μL PBS. Labelling efficiency was monitored by RP-HPLC (see FIG. 23).
1.3.11 Synthesis of compound C14
Figure imgf000143_0003
I6 (1.2 mg, 3.5 μmol, 1 eq.) was dissolved in 100 μL DMF to perform pre-activation with EDC (0.6 μL, 3.4 μmol, 1 eq.), HOBt (0.5 mg, 3.7 μmol, 1 eq.) and DIPEA (2.5 μL, 14 μmol, 4 eq.). After 10 min at room temperature, I10 (1.9 mg, 3.5 μmol, 1 eq.) was added to proceed with the coupling for 1 h at room temperature in the dark. The solvent was evaporated under reduced pressure and the residue dissolved in TFA to perform Boc deprotection for 15 min at room temperature before direct purification by RP-HPLC affording C14 as yellow solid (1.1 mg, 43% yield), m/z calculated for C32H30CIN4O10 S3 [M+H]+: 761.0807, detected (TOF MS ES+): 761.1006.
1 .3.12 Synthesis of compound C15 (AAZ*)
Figure imgf000144_0001
15 (1.2 mg, 2.0 μmol, 1 eq.) was taken up in 100 μL DMF to which FITC (3',6'-dihydroxy-6- isothiocyanatospiro[2-benzofuran-3,9'-xanthene]-1-one, 0.8 mg, 2.1 μmol, 1 eq.) and DIPEA (1.4 μL, 8.0 μmol, 4 eq.) were added. After 1 h at room temperature, the crude was purified via RP-HPLC to lyophilize merged product fractions overnight. The final product C15 (AAZ*) was obtained as a yellow solid (0.51 mg, 26% yield), m/z calculated for C40H42N9O15 S3 [M+H]+: 984.1957, detected (TOF MS ES+): 984.2300.
1 .3.13 Synthesis of intermediate 111
Figure imgf000144_0002
1 -(tert-butyl) 2-methyl (2R,4R)-4-aminopyrrolidine-1 ,2-dicarboxylate (50 mg, 205 μmol, 1 eq.) was treated with 4-nitrophenyl carbonochloridate (41 mg, 205 μmol, 1 eq.) and DIPEA (71 μL, 409 μmol, 2 eq.) in dry DCM for 10 min at 0 °C. 5-amino-1 ,3,4-thiadiazole-2-sulfonamide (41 mg, 225 μmol, 1.1 eq.) was added and the reaction mixture stirred for 1 h at room temperature. The solvent was evaporated and the residue taken up in 1 mL TFA. After 1 h at room temperature, TFA was evaporated and the crude purified by RP- HPLC to give I11 as a colorless oil (59 mg, 82%).
1 .3.14 Synthesis of intermediate 112
Figure imgf000145_0001
I6 (20.4 mg, 50.7 μmol, 1.1 equiv.) was dissolved in DMF and pre-activated for 1 min by the addition of benzotriazol-1-yloxy(tripyrrolidin-1-yl)phosphanium;hexafluorophosphate (PyBOP, 36.7 mg, 70.5 μmol, 1.3 eq.) and DIPEA (28.3 μL, 162.7 μmol, 3 eq.). 111 (19 mg, 54.2 μmol, 1 eq.) was added to the pre-activation solution and incubated for 16 h at room temperature. The solvent was evaporated and the residue taken up in 500 μL TFA. After 1 h at room temperature, evaporation of TFA was followed by neutralization with 1 M NaOHaq. Subsequently, ester hydrolysis was performed for 3 h at room temperature with NaOH (540 μL 1 M NaOHaq, 540 μmol, 10 eq.) in 1 mL water:THF (1 :1). After neutralization with 1 M HCIaq, the solvent was evaporated under reduced pressure and the crude purified by RP-HPLC to give 112 as a white solid (5 mg, 17%).
1 .3.15 Synthesis of intermediate 113
Figure imgf000145_0002
2-(2,4-Dichlorophenyl)acetic acid (3 mg, 15 μmol, 1 eq.) was dissolved in DMF and pre-activated for 10 min by the addition of EDC (2.6 μL, 15 μmol, 1 eq.), HOBt (1.8 mg, 15 μmol, 1 eq.) and DIPEA (10.5 μL, 60 μmol, 4 eq.). 1-Tert-butyl 2-methyl (2R,4R)-4-amino-1,2-pyrrolidinedicarboxylate hydrochloride (4.2 mg, 15 μmol, 1 eq.) was added to the pre-activation solution and incubated for 4 h at room temperature. The solvent was evaporated and the residue taken up in 200 μL TFA. After 1 h at room temperature, TFA was evaporated under reduced pressure, the residue taken up in water and lyophilized to continue with the coupling to 4-oxo-4-[(5-sulfamoyl-1 ,3,4-thiadiazol-2-yl)amino]butanoic acid (4.65 mg, 16.6 μmol, 1.1 eq.) which was preactivated with PyBOP (10.2 mg, 19.6 μmol, 1.3 eq.) and DIPEA (7.9 μL, 45.3 μmol, 3 eq.) beforehand. After incubation for 16 h at room temperature, the solvent was evaporated. Subsequently, ester hydrolysis was performed for 3 h at room temperature with NaOH (150 μL 1 M NaOHaq, 150 μmol, 10 eq.) in 300 μL water:THF (1 :1). After neutralization with 1 M HCIaq, the solvent was evaporated under reduced pressure and the crude purified by RP-HPLC to give 113 as a white solid (2.3 mg, 26%).
1 .3.16 Synthesis of intermediate 114
Figure imgf000146_0001
(2R,4R)-1-(((9/-/-fluoren-9-yl)methoxy)carbonyl)-4-azidopyrrolidine-2-carboxylic acid (25 mg, 66 μmol, 1 eq.) was dissolved in 10 mL methanol and 83 μL 4 M HCI in dioxane (330 μmol, 5 eq.). The solution was refluxed for 16 h to receive the crude after evaporating the solvent under reduced pressure. The residue was dissolved in DMF containing 20% piperidine. After stirring for 1 h, the solvent was evaporated. A pre- activation solution with I6 (22.6 mg, 66 μmol, 1 eq.), HATU (22.6 mg, 59 μmol, 0.9 eq.) and DIPEA (23 μL, 132 μmol, 2 eq.) was stirred for 10 min before adding to the dried intermediate. After 3 h at room temperature, the crude was purified by RP-HPLC to give 114 (21 .5 mg, 73%) as a white solid.
1 .3.17 Synthesis of intermediate 115
Figure imgf000146_0002
114 (5 mg, 10.1 μmol, 1 eq.) was taken up in tBuOH:water (1 :1) together with A/-(5-sulfamoyl-1,3,4- thiadiazol-2-yl)hex-5-ynamide (2.8 mg, 10.1 μmol, 1 eq.), CuSO4(H2O)5 (2 mg, 10.1 μmol, 1 eq.) and sodium ascorbate (2.5 mg, 10.1 μmol, 1 eq.). The reaction mixture was stirred for 16 h at 60 °C before evaporating the solvent. Subsequently, ester hydrolysis was performed for 3 h at room temperature with NaOH (100 μL 1 M NaOHaq, 100 μmol, 10 eq.) in 200 μL water:THF (1 :1). After neutralization with 1 M HCIaq, the solvent was evaporated under reduced pressure and the crude purified by RP-HPLC to give 115 as a white solid (5.3 mg, 80%).
1 .3.18 Synthesis of intermediate 116
Figure imgf000146_0003
2-(2,4-Dichlorophenyl)acetic acid (3 mg, 15 μmol, 1 eq.) was dissolved in DMF and pre-activated for 10 min by the addition of EDC (2.6 μL, 15 μmol, 1 eq.), HOBt (1.8 mg, 15 μmol, 1 eq.) and DIPEA (10.5 μL, 60 μmol, 4 eq.). 1-Tert-butyl 2-methyl (2R,4R)-4-amino-1,2-pyrrolidinedicarboxylate hydrochloride (4.2 mg, 15 μmol, 1 eq.) was added to the pre-activation solution and incubated for 4 h at room temperature. The solvent was evaporated and the residue taken up in 200 μL TFA. After 1 h at room temperature, TFA was evaporated under reduced pressure, the residue taken up in water and lyophilized. In a separate flask, 5- amino-1 ,3,4-thiadiazole-2-sulfonamide (2.7 mg, 15 μmol, 1 eq.) was treated with 4-nitrophenyl carbonochloridate (3 mg, 15 μmol, 1 eq.) and DIPEA (5.3 μL, 30 μmol, 2 eq.) in dry ACN for 30 min at 0 °C. Then, the lyophilized crude was added and after incubation for 1 h at room temperature, the solvent was evaporated. Subsequently, ester hydrolysis was performed for 3 h at room temperature with NaOH (150 μL 1 M NaOHaq, 150 μmol, 10 eq.) in 300 μL water:THF (1:1). After neutralization with 1 M HCIaq, the solvent was evaporated under reduced pressure and the crude purified by RP-HPLC to give 116 as a white solid (1 .6 mg, 20%).
1 .3.19 Synthesis of intermediates 117, 118, 119, 120 and 121
Figure imgf000147_0001
117, 118, 119, 120 and 121 were synthesized by acid (I7, 112, 113, 115 or 116) pre-activation with EDC (1 eq.), HOBt (1 eq.) and DIPEA (3 eq.) in DMF for 15 min at room temperature, followed by addition of tert-butyl N6-(tert-butoxycarbonyl)-L-lysinate hydrochloride (1 eq.). After 20 h at room temperature, the solvent was evaporated and TFA added. Stirring for 1 h at room temperature was followed by TFA removal and the mixtures were purified by RP-HPLC, resulting in the products as white solids: I17 (0.25 mg, 89% yield), 118 (0.9 mg, 37% yield), I19 (1.4 mg, 57% yield) ), I20 (0.8 mg, 32% yield), I21 (1.15 mg, 58% yield).
1 .3.20 Synthesis of compounds C19, C20, C21, C22 and C23
Figure imgf000148_0001
C19, C20, C21, C22 and C23 were synthesized by mixing amines (117, 118, 119, 120 or 121) with FITC (0.8 eq.) and DIPEA (3.5 eq.) in DMF for 45 min at room temperature. The mixtures were purified by RP-HPLC, resulting in the products as yellow solids: C19 (0.19 mg, 60% yield), C20 (0.1 mg, 80% yield), C21 (0.08 mg, 52% yield), C22 (0.09 mg, 60% yield), C23 (0.07 mg, 55% yield).
Example 2 - Affinity and selectivity measurements of compounds by fluorescence polarization
2.1 General Remarks
Fluorescence polarization was measured in black 384-well microplates on a Tecan Spark® Multimode Microplate Reader (λExcitation = 485 ± 20 nm, λEmission = 535 ± 25 nm). In general, a dilution series of the protein in the respective buffer (typically 1 :1) was prepared to reach a volume of 5 μL per well. The fluorophore-conjugated compound was diluted in the protein buffer to reach a concentration of 20 nM, 10 nM (FIG. 35) or 2 nM (FIG. 34) to add 5 μL to each well. The plate was centrifuged (400 ref, 1 min) and incubated in the dark for 15 min previous to the measurements.
2.2 Affinity measurement
We synthesized the fluoresceinated conjugates of four stereoisomers (compound C1, C3, C5 and C7) to measure the affinity against recombinantly expressed human CAIX via fluorescence polarization. We observed stereoselective binding of compound C7 (2R,4R; KD = 15 ± 2 nM), while no binding was detected for the other isomers (compound C1, C3 and C5, see FIG. 26, top).
To analyze which parts of the molecule are important for the binding of CAIX, we performed a fragment screening and identified the sulfonamide bearing thiophene (compound C12) and the respective proline derivative (compound C14) as micromolar CAIX binders (KD = 1.0 ± 0.1 μM and 1.1 ± 0.2 μM). The 2-(2,4-dichlorophenyl)acetic acid proline derivative (compound C13) did not bind CAIX while the combination with the sulfonamide resulted in the highly potent CAIX ligand (compound C8) with a dissociation constant in the nanomolar range (KD = 6 ± 1 nM, see FIG. 26, bottom).
2.3 Selectivity measurement
Compound C7 and acetazolamide (AAZ*) were screened against human CAIX and CAIX isozymes (bovine CAI I, human CAIV, human CAXII and human CAXIV). Compound C7 was identified as highly selective CAIX ligand with low affinity to human CAXII (no fitting applicable) and no detectable binding to the other isozymes (see FIG. 27 and Table 6). In contrast, AAZ* tightly bound to all screened carbonic anhydrases with no distinct selectivity for CAIX (see FIG. 27 and Table 6).
The selectivity was confirmed expanding the analysis to a set of other protein targets (see FIG. 31 and 32).
Table 6. Dissociation constants (KD) of compound C7 and AAZ* for CAIX and respective isozymes. Each value is given as mean ± standard deviation (n = 3). h = human, b = bovine, N.D. = not detected.
Figure imgf000149_0001
The selectivity was also confirmed by expanding the analysis to a set of further binders using the same fluorescent polarization fluorescent polarization (see FIG. 33 and Table 7), namely, to compounds C16, C17 and C18, wherein R is L6, i.e., a DNAZLNA(bodipy) multiplex. Exemplary DNA has a 74-mer sequence attached via 5’ C6 amino modification:
5’ Modif.-GGAGCTTCTGAATTCTGTGTGCTGXXXXXXCGAGTCCCATGGCGCCGGATCGACGXXXXXXXGCGTCAGGCAGC, wherein each X may independently be any of A, C, T and G; and the LNA (bodipy) is a 3’-amino modified 8-mer LNA (5’ GGCTACTA-C6-amino 3’) which has been conjugated to BODIPY-TMR-X (Thermo Fisher Scientific, #D6117), wherein the DNA have been annealed to the complementary BODIPY-modified 8-mer LNA in a 1 :1 molar ratio by mixing 25 μL of 2 μM solutions each (in PBS), to subsequently heat the mixture to 70 °C for 5 min and let the solution passively cool down to room temperature for 30 min.
Table 7. Dissociation constants (KD) of compounds C16, C17 and C18 for CAIX and isozyme CAII (h = human, b = bovine).
Figure imgf000149_0002
The results suggest that similar affinity towards CAIX and selectivity over CAII is achieved across the scope of the present invention. Example 3 - Qualitative and quantitative biodistribution studies
3.1 Cell culture
Human renal cell carcinoma cell line SKRC-52 were grown in RPMI-1640 supplemented with 10% FBS and 1x antibiotic-antimycoticum at 37 °C, 5% CO2. Cell passaging was performed every second day, using Trypsin-EDTA 0.25% to detach the cells. Cells were used to grow tumors in mice.
3.2 In vivo IVIS imaging for qualitative biodistribution analysis
To test if stereoselective CAIX binding could translate to stereoselective in vivo targeting of CAIX- expressing tumors we synthesized the respective IRDye conjugates (compound C2, C4, C6 and C10).
Balb/c nude mice bearing subcutaneous SKRC-52 tumors (150 - 300 mm3) were injected intravenously with 3 nmol of each compound dissolved in 150 μL sterile PBS to acquire fluorescence images 4 h postinjection.
Mice were anaesthetized with Attane™ isoflurane to acquire fluorescence images on an IVIS spectrum imaging system (Xenogen; 1 sec exposure; binning factor = 8; λExcitation = 745 nm; λEmission = 800 nm; f number 2; field of view 13.1). Images were taken 10 min, 1 h, 2 h, 4 h and 6 h post-injection.
Only compound C10 (2R,4R) revealed accumulation in the tumor site (see FIG. 28).
3.3 Quantitative biodistribution analysis with radiolabeled compound C11
The CAIX ligand was synthesized as DOTAGA conjugate (compound C11) to allow radiolabeling with
177Lu.
Balb/c nude mice bearing subcutaneous SKRC-52 tumors (200 - 300 mm3) were injected intravenously with 3 nmol (0.85 MBq) [177Lu]Lu-C11. The mice were sacrificed 6 hours post-injection to isolate and measure radioactivity of the following organs: tumor, liver, kidneys, spleen, stomach, intestine, lungs, heart, tail, muscle and blood. Radioactivity was measured with a Packard Cobra Gamma Counter and plotted as % ID/g ± SEM (n = 4). The values were normalized to the normal radioactive decay of [177Lu]Lu-C11 (normalized to the batch used for injection).
The radiolabeled compound was detected in the tumor and kidneys. Other healthy organs only revealed [177L u]Lu-C11 traces, highlighting the selectivity of the novel CAIX ligand (see FIG. 29). References
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[3] https://www.proteinatlas.org/ENSG00000107159-CA9, accessed on the 20th of August 2021.
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[7] S. Cazzamalli, A. Dal Corso, F. Widmayer, D. Neri, Chemically Defined Antibody- and Small Molecule-Drug Conjugates for in Vivo Tumor Targeting Applications: A Comparative Analysis, J. Am. Chem. Soc. 2018, 140, 1617-1621.
[8] S. Parkkila, H. Rajaniemi, A.-K. Parkkila, J. Kivela, A. Waheed, S. Pastorekova, J. Pastorek, W. S. Sly, Carbonic anhydrase inhibitor suppresses invasion of renal cancer cells in vitro, Proc. Natl. Acad. Sci. U. S. A. 2000, 97, 2220.
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[10] O. C. Kulterer, S. Pfaff, W. Wadsak, N. Garstka, M. Remzi, C. Vraka, L. Nies, M. Mitterhauser, F. Bootz, S. Cazzamalli, eta!., A Microdosing Study with 99mTc-PHC-102 forthe SPECT/CT Imaging of Primary and Metastatic Lesions in Renal Cell Carcinoma Patients, J. Nucl. Med. 2021, 62, 360.
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Claims

1. A compound, its individual diastereoisomers, its hydrates, its solvates, its crystal forms, its individual tautomers or a pharmaceutically acceptable salt thereof, wherein the compound structure comprises at least one group A independently represented by the following structure: wherein:
Figure imgf000152_0001
R1 is represented by -C(Y)-R1 a-SO2NR(R’), or -(G1)q-(CR(R’))r(G2)s-R1 a-SO2NR(R’);
R1 a is independently a 6- to 10-membered aromatic group or a 5- to 10-membered heteroaromatic group having up to 3 heteroatoms independently selected from N, O and S, and wherein R1 a is substituted, in addition to SO2NR(R’), by one or more substituents R3, wherein:
G1 is independently selected from C(Y), SO, SO2 CR(R'), triazolyl, and CR(R')triazolyl;
G2 is independently selected from C(Y), C(Y)NR, SONR, SO2NR, CR(R')NR, NRC(Y), NRSO, NR SO2, NRCR(R'), triazolyl, triazolyl-NR, triazolyl-CR(R'), NR-triazolyl, and CR(R')-triazolyl; each of q and s is independently selected from 0 and 1 ; r is independently selected from 0, 1 , 2, 3 and 4, preferably 2; with the proviso that at least one of q and s is 1 ; with the proviso that q + r + s ≥ 1 ;
R2 is represented by R2a-(CR(R’))p-C(Y)-, or R2 and the group RN- form together a residue represented by R2a-(G4)v-(CR(R’))u-(G3)t-;
R2a is a 6- to 10-membered aromatic group or a 5- to 10-membered heteroaromatic group having up to 5, preferably up to 3, heteroatoms independently selected from N, O and S and optionally substituted by C 1 -4alkyl, wherein R2a is optionally substituted with one or more substituents R4, wherein:
G3 is independently selected from C(Y)NR, SONR, SO2NR, CR(R')NR, triazolyl, triazolylCR(R'), and CR(R')triazolyl;
G4 is independently selected from C(Y), NRC(Y), NRSO, NRSO2, NRCR(R'), C(Y)NR, SONR, SO2NR, CR(R')NR, triazolyl, NRtriazolyl, triazolylNR, CR(R')triazolyl, and triazolyl CR(R'), each of t and v is independently 0 or 1 ; u is independently selected from 0, 1 , 2, 3 and 4, preferably 3 preferably with the proviso that at least one of t and v is 1 , more preferably both t and v are 1 ; preferably with the proviso that t + u + v ≥ 1 , more preferably ≥ 2, most preferably ≥ 3; and p is independently 1 , 2, 3 or 4, preferably 1 or 2, more preferably 1 ; wherein one or more occurrence of CR(R’) may be optionally replaced by a group independently selected from O, S and NR, with the proviso that no two O atoms are adjacent to each other; each occurrence of Y is independently selected from O, S, NR and CR(R’); each R3 and R4 is independently selected from: NH2, OH, COOH, COOR, C1- 6 alkyl, C1- 6 haloalkyl, O(C1- 6 alkyl), O(C1- 6 haloalkyl), O(C2-6 alkenyl), C1- 6 heteroalkyl, NO2, C(O)NH2, C(O)NR(R’), CN, oxo and halogen, wherein R3 and R4 each independently may optionally form together with any CR(R’) a 4- to 7- membered carbocyclic or heterocyclic ring; and each occurrence of R and R’ is independently H or selected from C1- 6 -alkyl, O( C1- 6 alkyl), C3-10 cycloalkyl, O(C3-10 cycloalkyl), S(C3-10 cycloalkyl), C2-6 alkenyl, C2-6 alkynyl, C1- 6 heteroalkenyl, C1- 6 heteroal kynyl, C3-10 cycloalkenyl, C1 -10 cycloheteroalkenyl, C6-10 aryl, C1-
10 heteroaryl, (C6-10 aryl)C1- 6 alkyl and (C1- 10 heteroaryl)C1- 6 alkyl, each of which can be optionally substituted with from 1 to 3 substituents selected from C1- 6 -alkyl, OH, oxo and halogen; wherein the term “diastereoisomers”, unless specified otherwise, refers to stereoisomers of a compound having different configurations at one or more stereocenters in parts of the molecule other than moiety A, such that the the stereochemical configuration of moiety A is as represented in the respective structure, and the individual diastereomers differ in their stereochemical configuration in the in parts of the molecule other than moiety A.
2. The compound of claim 1, wherein:
R1a is independently a 5-membered heteroaromatic group having up to 3 heteroatoms independently selected from N, O and S, and wherein the heteroaromatic group is substituted, in addition to SO2NR(R’), by 1 or 2 substituents R3;
R2a is a 6- to 10-membered aromatic group substituted by 0, 1 , 2 or 3 substituents R4; p is 1 ; each occurrence of Y is O; and each R3 and R4 is independently selected from OCH3, OCH2CH3, OCH2CH2CH3, OCH2(CH3)2, O-cyclopropyl, OCF3, OCF2CF3, COOH, COOCH3, NO2, CN, F; Cl; Br; and I.
3. The compound of any of the preceding claims, wherein A is represented by any of the following structures: wherein:
Figure imgf000154_0001
c is independently 1 or 2, preferably 1 ; d is independently 0, 1 , 2, 3, 4 or 5, preferably 2;
W is independently selected from NR, O, S, S(O) and SO2.
4. The compound of any of the preceding claims, wherein A is represented by any of the following structures:
Figure imgf000154_0002
wherein each of W1 - W3, W4 is independently selected from CH, S, O, and N, wherein at least one is S or O.
5. The compound of any of the preceding claims, wherein A is represented by any of the following structures:
Figure imgf000154_0003
wherein W is independently selected from S and O;
W1 is S or O; and each of W3, W 4 is independently selected from CH, S, O, and N.
6. The compound of any of the preceding claims, wherein A is represented by any of the following structure A-1 to A-5:
Figure imgf000155_0001
The compound of any one of the preceding claims, wherein the compound is represented by the following Formula I, la, or lb,
Figure imgf000155_0002
wherein each A is independently defined as in any one of the preceding claims;
B is a single bond or an optionally substituted C1- 50 aliphatic group, in which optionally one or more carbon atoms can be replaced by heteroatom, a C3-12 carbocyclic or a C1- 12 heterocyclic group, and which can be saturated or optionally contain one or more double or triple bonds; and each C is an atom, a molecule or a particle, and/or is a therapeutic or diagnostic agent.
8. The compound of claim 7, wherein B is a single bond or is represented by any of the following general Formulae II— V, lla-Va or Ilb-Vb:
Figure imgf000156_0001
wherein each x is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10; each y is 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10; each z is 0, 1 , 2, 3 or 4, preferably 1 ; with the proviso that in Formulae lla-Va and lib— Vb, z and at least one of x and y is not 0;
* represents a point of attachment to a moiety A;
• represents a point of attachment to a moiety C; and each of BS and BL is independently selected from alkylene, cycloalkylene, arylalkylene, heteroarylalkylene, heteroalkylene, heterocycloalkylene, alkenylene, cycloalkenylene, arylalkenylene, heteroarylalkenylene, heteroalkenylene, heterocycloalenkylene, alkynylene, heteroalkynylene, arylene, heteroarylene, aminoacyl, oxyalkylene, aminoalkylene, diacid ester, dialkylsiloxane, amide, thioamide, thioether, thioester, ester, carbamate, hydrazone, thiazolidine, methylene alkoxy carbamate, disulfide, vinylene, imine, imidamide, phosphoramide, saccharide, phosphate ester, phosphoramide, carbamate, dipeptide, tripeptide, tetrapeptide, each of which is optionally substituted. The compound of any one of claims 7 and 8, wherein B is represented by (Bs)x wherein: each x is selected f r om 0, 1, 2, 3, 4, 5, 6,7 , 8, 9 an d 1 0; each BS is independently selected from the group consisting of alkylene, cycloalkylene, arylalkylene, heteroarylalkylene, heteroalkylene, heterocycloalkylene, alkenylene, cycloalkenylene, arylalkenylene, heteroarylalkenylene, heteroalkenylene, heterocycloalenkylene, alkynylene, heteroalkynylene, arylene, heteroarylene, aminoacyl, oxyalkylene, aminoalkylene, diacid ester, dialkylsiloxane, amide, thioamide, thioether, thioester, ester, carbamate, hydrazone, thiazolidlne, methylene alkoxy carbamate, disulfide, vinylene, imine, imidamide, phosphoramide, saccharide, phosphate ester, phosphoramide, carbamate, dipeptide, tripeptide and tetrapeptide. The compound according to any one of claims 7-9, wherein the moiety C is a chelating agent group suitable for radiolabeling; a radioactive group comprising a radioisotope; a chelate of a radioactive isotope with a chelating agent; a fluorophore group; a cytotoxic and/or cytostatic agent; immunomodulator agent; or a protein. The compound according to claim 10, wherein:
(a) the chelating agent group suitable for radiolabeling is selected from sulfur colloid, diethylenetriaminepentaacetic acid (DTPA), ethylenediaminetetraacetic acid (EDTA), 1 ,4,7,10- tetraazacyclododecane-N,N',N",N",-tetraacetic acid (DOTA), 1 ,4,7-triazacyclononane-N,N',N"- triacetic acid (NOTA), 1 ,4,8,11-tetraazacyclotetradecane-N,N',N",N",-tetraacetic acid (TETA), iminodiacetic acid, bis(carboxymethylimidazole)glycine, 6-Hydrazinopyridine-3-carboxylic acid; or has a structure according to the following formula:
Figure imgf000157_0001
wherein: n is 0, 1 , 2, 3, 4 or 5; preferably 1 ;
R1e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
R2e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; each R3e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; R4e is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and X is O, NH or S; preferably O; or has a structure according to the following formula:
Figure imgf000157_0002
156 wherein: n is 0, 1 , 2, 3, 4 or 5; preferably 1 is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOK;
R2f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH;
R3f is independently H, COOH, aryl-COOH or heteroaryl-COOH; preferably COOH; and X is O, NH or S; preferably O;
(b) the radioactive group comprising a radioisotope is selected from
Figure imgf000158_0003
Figure imgf000158_0002
(c) the chelate of a radioactive isotope is a chelate of an isotope listed under (b) above and/or with a chelating agent listed under (a) above; or
(d) the fluorophore group is selected from a xanthene dye, acridine dye, oxazine dye, cyanine dye, styryl dye, coumarine dye, porphine dye, fluorescent metal-ligand-complex, fluorescent protein, nanocrystals, perylene dye, boron-dipyrromethene dye and phtalocyanine dye
(e) the cytotoxic and/or cytostatic agent is selected from chemotherapeutic agent selected from the group consisting of topoisomerase inhibitors, alkylating agents, antimetabolites, antibiotics, mitotic disrupters, DMA intercalating agents, DNA synthesis inhibitors, DNA-RNA transcription regulator, enzyme inhibitors, gene regulators, hormone response modifiers, hypoxia- selective cytotoxins, epidermal growth factor inhibitors, anti-vascular agents and a combination of two or more thereof,
(f) the immunomodulator agent is selected from molecules known to be able to modulate the immune system, such as ligands of CD3, CD25, TLRs, STING, 4-1 BBL, 4-1 BB, PD-1 , mTor, PDL- 1 , NKG-2D IMiDs, wherein ligands can be agonists and/or antagonist; or
(g) the protein is selected from cytokines, such as IL2, IL10, IL12, IL15, TNF, Interferon Gamma, or is an antibody.
12. The compound according to any one of claims 7-11 , each -B-C is independently represented by any one of the following structures:
Figure imgf000158_0001
Figure imgf000159_0001
Figure imgf000160_0001
wherein each of AA3, AA4, AA5, AA6, AA7, and AA8 represents a proteinogenic or non- proteinogenic amino acid, or is absent; each BS is independently selected from the group consisting of alkylene, cycloalkylene, arylalkylene, heteroarylalkylene, heteroalkylene, heterocycloalkylene, alkenylene, cycloalkenylene, arylalkenylene, heteroarylalkenylene, heteroalkenylene, heterocycloalenkylene, alkynylene, heteroalkynylene, arylene, heteroarylene, aminoacyl, oxyalkylene, aminoalkylene, diacid ester, dialkylsiloxane, amide, thioamide, thioether, thioester, ester, carbamate, hydrazone, thiazolidine, methylene alkoxy carbamate, disulfide, vinylene, imine, imidamide, phosphoramide, saccharide, phosphate ester, phosphoramide, carbamate, dipeptide, tripeptide and tetrapeptide; each n is independently 0, 1 , 2, 3, 4, 5, 6, 7, or 8; each m is independently 0, 1 , 2, 3, or 4; each x is selected from 0, 1 , 2, 3, 4, 5, 6, 7, 8, 9 and 10; each Rc, Rd , and Re is independently selected from H, optionally substituted C1- 6 alkyl, (C3-C10 carbocyclyl)C1- 6 alkyl, (C6-C10 aryl)C1- 6 alkyl, (C1-C10 heterocyclyl)C1- 6 alkyl, C2-6 alkenyl,
C2-6 alkynyl, and C6-C10 aryl, in each of which optionally one or more of the carbon atoms can be replaced by heteroatoms; preferably selected from side-chain residues of proteinogenic or a non-proteinogenic amino acids; each occurrence of R and R’ is independently H or selected from C1- 6 -alkyl, O(C1- 6 alkyl), S(C1- 6-alkyl), C3-10 cycloalkyl, O(C3-10 cycloalkyl), S(C3-10 cycloalkyl), C2-6 alkenyl, C2-6 alkynyl, C1- 6 heteroalkenyl, C1- 6 heteroal kynyl, C3-10 cycloalkenyl, C1 -10 cycloheteroalkenyl, C6-10 aryl, C1- 10 heteroaryl, (C6-10 aryl)C1- 6 alkyl and (C1- 10 heteroaryl)C1- 6 alkyl, each of which can be optionally substituted with from 1 to 3 substituents selected from C1- 6 -alkyl, OH, oxo and halogen.
13. The compound according to any one of the claims 7-12, wherein:
(a) A-B is represented by a structure selected from:
Figure imgf000161_0001
Figure imgf000162_0001
Figure imgf000163_0001
Figure imgf000164_0001
Figure imgf000165_0001
(b) C is represented by a structure selected from:
Figure imgf000165_0002
Figure imgf000166_0001
Figure imgf000167_0001
Figure imgf000168_0001
wherein the combination of A-B and C is preferably selected such that the covalent bond — connecting B with C is represented by S— S, S— C, C— S, C(O)— Ra, C(O)— N, C(O)— O, C(O)— N, N— C(O), N— C(O)O, N— C(S) or OC(O)— N. 14. The compound according to any one of claims 7-13, wherein -B-C is represented by any one of the following structures:
Figure imgf000169_0001
15. The compound of any of the preceding claims, wherein moiety A is selected from A-1 to A-5, as defined in the description. 16. The compound of an of the preceding claims, wherein moiety B is selected from B-1 to B-21, as defined in the description. 17. The compound of an of the preceding claims, wherein moiety C is selected from C-1 to C-31, as defined in the description. 18. A compound having a structure selected from those listed in Table 1, Table 3.1 and/or Table 3.2, its individual diastereoisomers, its hydrates, its solvates, its crystal forms, its individual tautomers or a pharmaceutically acceptable salt thereof, wherein the term “diastereoisomers”, unless specified otherwise, refers to stereoisomers of a compound having different configurations at one or more stereocenters in parts of the molecule other than moiety A, such that the the stereochemical configuration of moiety A is as represented in the respective structure, and the individual diastereomers differ in their stereochemical configuration in the in parts of the molecule other than moiety A. 19. A pharmaceutical composition comprising the compound according to any one of the preceding claims, and a pharmaceutically acceptable excipient. 20. The compound or the pharmaceutical composition according to any one of the preceding claims for use in:
(a) a method for treatment of the human or animal body by surgery or therapy or a diagnostic method practiced on the human or animal body; or
(b) a method for therapy or prophylaxis of a subject suffering from or having risk for a disease or disorder; or
(c) a method for guided surgery practiced on a subject suffering from or having risk for a disease or disorder; or
(d) a method for diagnosis of a disease or disorder, the method being practiced on the human or animal body and involving a nuclear medicine imaging technique, such as Positron Emission Tomography (PET) or Single Photon Emission Computed Tomography (SPECT); or
(e) a method for targeted delivery of a therapeutic or diagnostic agent to a subject suffering from or having risk for a disease or disorder, 21. The compound or the pharmaceutical composition for use according to claim 20, wherein the disease or disorder is independently selected from hypoxia-related diseases such as cancer, preferably wherein the cancer is selected from the group consisting of breast cancer, pancreatic cancer, colon cancer, multi-drug resistant colon cancer, rectal cancer, colorectal cancer, metastatic colorectal cancer, lung cancer, non-small cell lung cancer, head and neck cancer, ovarian cancer, hypopharynx cancer, nasopharynx cancer, larynx cancer, bladder cancer, cholangiocarcinoma, clear cell renal carcinoma, glioma, astrocytoma, cervix cancer and kidney cancer.
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