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WO2023244713A1 - Quinazoline derivatives, compositions and methods thereof - Google Patents

Quinazoline derivatives, compositions and methods thereof Download PDF

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Publication number
WO2023244713A1
WO2023244713A1 PCT/US2023/025372 US2023025372W WO2023244713A1 WO 2023244713 A1 WO2023244713 A1 WO 2023244713A1 US 2023025372 W US2023025372 W US 2023025372W WO 2023244713 A1 WO2023244713 A1 WO 2023244713A1
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Prior art keywords
compound
substituted
unsubstituted
nrr
mmol
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French (fr)
Inventor
Hongbo Deng
Tao Liu
Minghong HAO
Upul K. Bandarage
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Ensem Therapeutics Inc
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Ensem Therapeutics Inc
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D519/00Heterocyclic compounds containing more than one system of two or more relevant hetero rings condensed among themselves or condensed with a common carbocyclic ring system not provided for in groups C07D453/00 or C07D455/00
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04Ortho-condensed systems
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/08Bridged systems

Definitions

  • the invention generally relates to novel compounds and therapeutic uses thereof. More particularly, the invention provides novel quinazoline derivatives that are shown to be potent and selective inhibitors of KRas, in particular KRas (G12D). The invention also provides pharmaceutical compositions comprising compounds of the invention and methods for treating diseases and disorders associated with or related to KRas activities, such as various types of cancer.
  • KRAS Philadelphia rat sarcoma virus
  • KRas a gene that provides instructions for making a protein called KRas, a part of the RAS/MAPK pathway.
  • the protein relays signal from outside the cell to the cell's nucleus instructing the cell to grow and divide (proliferate) or to mature and take on specialized functions (differentiate).
  • KRas serves as a molecular switch cycling between inactive (GDP-bound) and active (GTP -bound) states to transduce upstream cellular signals received from multiple tyrosine kinases to downstream effectors to regulate a wide variety of processes, such as cellular proliferation.
  • GDP-bound inactive
  • GTP -bound active
  • the role of activated KRas in malignancy was first observed over thirty years ago. (Santos et al. 1984 Science 223:661-664; Alamgeer et al. 2013 Current Opin Pharmcol.1394-401)
  • KRas mutation occurs in nearly 30% of human cancers. For example, mutations of KRas are observed in pancreatic ductal adenocarcinomas, colon and rectal carcinomas, and nonsmall cell lung carcinomas. Mutations often occur in the glycine residue of KRas at position 12 with KRas(Gl 2D) being the most prevalent and oncogenic variant.
  • KRas(Gl 2D) mutation has been shown to be present in about 25% of all pancreatic ductal adenocarcinoma patients, about 13% of all colorectal carcinoma patients, about 10% of all rectal carcinoma patients, about 4% of all non-small cell lung carcinoma patients and about 1.7% of all small cell lung carcinoma patients (The AACR Project GENIE Consortium, 2017 Cancer Discovery 7(8): 818-831, Dataset Version 4).
  • KRas inhibitors in particular, inhibitors of KRas mutants, especially KRas(G12D), that are safe and effective in treating diseases and conditions associated with aberrant expression of KRAS, such as various types of cancer (e.g., ductal cancer, colorectal cancer, rectal cancer, cell lung cancer).
  • various types of cancer e.g., ductal cancer, colorectal cancer, rectal cancer, cell lung cancer.
  • the invention provides novel quinazoline derivatives as KRas inhibitors, in particular KRas (G12D) inhibitors, which have been shown to exhibit favorable potency and selectivity profiles over known KRas inhibitors. These novel compounds selectively target, bind to, inhibit and/or modulates the activity of KRas.
  • the compound is also orally available with pharmacokinetic profiles suitable for development into an orally administered therapeutic agent for treating various diseases and disorders associated with or related to KRas activities, such as various types of cancer.
  • the invention generally relates to a compound having the structural Formula (I):
  • R 1 is XR 11 or NR 12 R 13 , wherein X is O, S or absent, R 11 is (CH2)iR 14 , and z is an integer selected from 0-6 (e.g., 0, 1, 2, 3, 4, 5 or 6), wherein (CHi); is optionally substituted;
  • R 2 is an unsubstituted or substituted 6- to 10-membered (e.g., 6-, 7-, 8-, 9- or 10- membered) unsaturated monocyclic or bicyclic ring, comprising 0-5 e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S;
  • R 3 is L-R 3 , wherein
  • L is a single bond or NR(CH2)k, wherein k is an integer selected from 0-3 (e.g., 0, 1, 2 or 3);
  • R 3 is an unsubstituted or substituted, 3- to 10-membered (e.g., 3-, 4-, 5-, 6-, 7-, 8- , 9- or 10-membered) saturated or unsaturated monocyclic, bicyclic or bridged ring moiety that comprises 0-5 (e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S; each of R 4 and R 5 is independently selected from the group consisting of H, halogen, CN, OH, unsubstituted or substituted Ci-4 alkyl, unsubstituted or substituted Ci-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R”, C(O)OR, unsubstituted or substituted 3- to 8- membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) carbocycle, and unsubstituted or substituted 3- to 8-member
  • R is H, unsubstituted or substituted C1-4 alkoxy, unsubstituted or substituted C1.4 alkyl, or unsubstituted or substituted 4- to 6-membered (e.g., 4-, 5- or 6-membered) carbocyclic ring.
  • the invention generally relates to a pharmaceutical composition comprising a compound disclosed herein and a pharmaceutically acceptable excipient, carrier, or diluent.
  • the invention generally relates to a unit dosage form comprising a pharmaceutical composition disclosed herein.
  • the invention generally relates to a method for inhibiting cell proliferation in vitro or in vivo, comprising contacting a cell with an effective amount of a compound disclosed herein.
  • the invention generally relates to a method for inhibiting KRas(G12D) activity in a cell, comprising contacting the cell with a compound disclosed herein.
  • the invention generally relates to a method for treating a disease or disorder mediated by a Ras mutant protein, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
  • the invention generally relates to a method for treating or reducing cancer, or a related disease or disorder, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
  • the invention generally relates to a method for treating or reducing cancer, or a related disease or disorder, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
  • the invention generally relates to use of a compound disclosed herein, and a pharmaceutically acceptable excipient, carrier, or diluent, in preparation of a medicament for treating a disease or disorder.
  • compositions and methods are intended to mean that the compositions and methods include the recited elements, but do not exclude other elements.
  • “consisting essentially of’ refers to administration of the pharmacologically active agents expressly recited and excludes pharmacologically active agents not expressly recited.
  • consisting essentially of does not exclude pharmacologically inactive or inert agents, e.g., pharmaceutically acceptable excipients, carriers or diluents.
  • the term “about” is understood as within a range of normal tolerance in the art, for example within 2 standard deviations of the mean. About can be understood as within 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1%, 0.5%, 0.1%, 0.05%, or 0.01% of the stated value. Unless otherwise clear from context, all numerical values provided herein can be modified by the term about.
  • administering encompasses the delivery to a subject of a compound as described herein, or a prodrug or other pharmaceutically acceptable form thereof, using any suitable formulation or route of administration, as discussed herein.
  • the term “co-administer” refers to the presence of two pharmacological agents in a subject’s body (e.g., in the blood) at the same time.
  • the two pharmacological agents can be administered concurrently or sequentially.
  • the terms "effective amount” or “therapeutically effective amount” refer to that amount of a compound or pharmaceutical composition described herein that is sufficient to achieve the intended application including, but not limited to, disease treatment, as illustrated below.
  • the amount is that is sufficient to negatively modulate or inhibit the activity of KRas (G12D). In some embodiments, the amount is that effective for reduction or amelioration of a symptom to stop or reversion of progression of a disease or disorder such as cancer. In some embodiments, the amount is that effective for detectable killing or inhibition of the growth or spread of cancer cells; the size or number of tumors; or other measure of the level, stage, progression or severity of the cancer.
  • the therapeutically effective amount can vary depending upon the intended application, or the subject and disease condition being treated, e.g., the desired biological endpoint, the pharmacokinetics of the compound, the disease being treated, the mode of administration, and the weight and age of the patient, which can readily be determined by one of ordinary skill in the art. Such amount may be administered as a single dosage or according to a regimen. The term also applies to a dose that will induce a particular response in target cells, e.g., reduction of cell migration.
  • the specific dose will vary depending on, for example, the particular compounds chosen, the species of subject and their age/existing health conditions or risk for health conditions, the dosing regimen to be followed, the severity of the disease, whether it is administered in combination with other agents, timing of administration, the tissue to which it is administered, and the physical delivery system in which it is carried.
  • KRas(G12D) or “KRas G12D” are used interchangeably and refers to a mutant form of a mammalian KRas protein that contains an amino acid substitution of an aspartic acid for a glycine at amino acid position 12.
  • the assignment of amino acid codon and residue positions for human KRas is based on the amino acid sequence identified by UniProtKB/Swiss-Prot P01116: Variantp.Glyl2Asp.
  • an “inhibitor” of “KRas(G12D)” or “KRas G12D” refers to a compound of the invention capable of negatively modulating or inhibiting all or a portion of the enzymatic activity of KRas G12D.
  • a “KRas G12D-associated” disease or disorder refers to diseases or disorders associated with or mediated by or having a KRas G12D mutation.
  • KRas G12D-associated diseases or disorders include various KRas G12D-associated cancer types.
  • the term “contacting” refers to the bringing together of indicated moieties in vitro or in vivo.
  • “contacting” a KRas G12D with a compound disclosed herein includes the administration of the compound to a subject having KRas G12D, as well as, for example, introducing the compound into a sample containing a cellular or purified preparation containing the KRas G12D.
  • a cell in which inhibition of KRas G12D activity is desired is contacted with an effective amount of a compound disclosed herein or pharmaceutically acceptable form thereof to negatively modulate the activity of KRas G12D.
  • a compound disclosed herein or pharmaceutically acceptable form thereof to negatively modulate the activity of KRas G12D.
  • the methods disclosed herein are designed to inhibit undesired cellular proliferation resulting from enhanced KRas G12D activity within the cell.
  • the cells may be contacted in a single dose or multiple doses in accordance with a particular treatment regimen to achieve the desired negative modulation of KRas G12D.
  • the ability of compounds to bind KRas G12D may be monitored in vitro using methods known in the art.
  • the inhibitory activity of exemplary compounds in cells may be monitored, for example, by measuring the inhibition of KRas G12D activity using methods known in the art.
  • an alkyl group that is optionally substituted can be a fully saturated alkyl chain (e.g., a pure hydrocarbon).
  • the same optionally substituted alkyl group can have substituents different from hydrogen. For instance, it can, at any point along the chain be bounded to a halogen atom, a hydroxyl group, or any other substituent described herein.
  • substituents used in the optional substitution of the described groups include, without limitation, halogen, oxo, CN, - COOH, -CH 2 CN, -O-C 1 -C 6 alkyl, C 1 -C 6 alkyl, -OC 1 -C 6 alkenyl, -OC 1 -C 6 alkynyl, -C 1 -C 6 alkenyl, -C 1 -C 6 alkynyl, -OH, -OP(O)(OH) 2 , -OC(O)C 1 -C 6 alkyl, -C(O)C 1 -C 6 alkyl, -OC(O)OCi- C 6 alkyl, NH 2 , NH(CI-C 6 alkyl), N(CI-C 6 alkyl) 2 , -NHC(
  • a “pharmaceutically acceptable form” of a disclosed compound includes, but is not limited to, pharmaceutically acceptable salts, esters, hydrates, solvates, isomers, prodrugs, and isotopically labeled derivatives of disclosed compounds.
  • a “pharmaceutically acceptable form” includes, but is not limited to, pharmaceutically acceptable salts, esters, isomers, prodrugs and isotopically labeled derivatives of disclosed compounds.
  • a “pharmaceutically acceptable form” includes, but is not limited to, pharmaceutically acceptable salts, esters, stereoisomers, prodrugs and isotopically labeled derivatives of disclosed compounds.
  • the pharmaceutically acceptable form is a pharmaceutically acceptable salt.
  • pharmaceutically acceptable salt refers to those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of subjects without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio.
  • Pharmaceutically acceptable salts are well known in the art. For example, Berge et al. describes pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences (1977) 66: 1-19 Pharmaceutically acceptable salts of the compounds provided herein include those derived from suitable inorganic and organic acids and bases.
  • Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
  • inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid
  • organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange.
  • salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, besylate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2- naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate
  • organic acids from which salts can be derived include, for example, acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, lactic acid, trifluoracetic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid, and the like.
  • the salts can be prepared in situ during the isolation and purification of the disclosed compounds, or separately, such as by reacting the free base or free acid of a parent compound with a suitable base or acid, respectively.
  • Pharmaceutically acceptable salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N + (Ci-4alkyl)4 salts.
  • Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, iron, zinc, copper, manganese, aluminum, and the like.
  • compositions include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, lower alkyl sulfonate and aryl sulfonate.
  • Organic bases from which salts can be derived include, for example, primary, secondary, and tertiary amines, substituted amines, including naturally occurring substituted amines, cyclic amines, basic ion exchange resins, and the like, such as isopropyl amine, tri methyl amine, diethylamine, tri ethyl amine, tri propyl amine, and ethanolamine.
  • the pharmaceutically acceptable base addition salt can be chosen from ammonium, potassium, sodium, calcium, and magnesium salts.
  • the pharmaceutically acceptable form is a pharmaceutically acceptable ester.
  • pharmaceutically acceptable ester refers to esters that hydrolyze in vivo and include those that break down readily in the human body to leave the parent compound or a salt thereof. Such esters can act as a prodrug as defined herein.
  • Pharmaceutically acceptable esters include, but are not limited to, alkyl, alkenyl, alkynyl, aryl, aralkyl, and cycloalkyl esters of acidic groups, including, but not limited to, carboxylic acids, phosphoric acids, phosphinic acids, sulfinic acids, sulfonic acids and boronic acids.
  • esters include formates, acetates, propionates, butyrates, acrylates and ethyl succinates.
  • the esters can be formed with a hydroxy or carboxylic acid group of the parent compound.
  • the pharmaceutically acceptable form is a “solvate” (e.g., a hydrate).
  • solvate refers to compounds that further include a stoichiometric or non-stoichiometric amount of solvent bound by non-covalent intermolecular forces.
  • the solvate can be of a disclosed compound or a pharmaceutically acceptable salt thereof. Where the solvent is water, the solvate is a "hydrate".
  • solvates and hydrates are complexes that, for example, can include 1 to about 100, or 1 to about 10, or 1 to about 2, about 3 or about 4, solvent or water molecules. It will be understood that the term "compound” as used herein encompasses the compound and solvates of the compound, as well as mixtures thereof.
  • the pharmaceutically acceptable form is a prodrug.
  • prodrug refers to compounds that are transformed in vivo to yield a disclosed compound or a pharmaceutically acceptable form of the compound.
  • a prodrug can be inactive when administered to a subject, but is converted in vivo to an active compound, for example, by hydrolysis (e.g, hydrolysis in blood).
  • hydrolysis e.g, hydrolysis in blood
  • a prodrug has improved physical and/or delivery properties over the parent compound.
  • Prodrugs can increase the bioavailability of the compound when administered to a subject (e.g., by permitting enhanced absorption into the blood following oral administration) or which enhance delivery to a biological compartment of interest (e.g., the brain or lymphatic system) relative to the parent compound.
  • exemplary prodrugs include derivatives of a disclosed compound with enhanced aqueous solubility or active transport through the gut membrane, relative to the parent compound.
  • the prodrug compound often offers advantages of solubility, tissue compatibility or delayed release in a mammalian organism (see, e.g., Bundgard, H., Design of Prodrugs (1985), pp. 7- 9, 21-24 (Elsevier, Amsterdam).
  • a discussion of prodrugs is provided in Higuchi, T., et al., "Pro-drugs as Novel Delivery Systems," A.C.S. Symposium Series, Vol. 14, and in Bioreversible Carriers in Drug Design, ed. Edward B. Roche, American Pharmaceutical Association and Pergamon Press, 1987, both of which are incorporated in full by reference herein.
  • a prodrug can include, but are not limited to, its physical properties, such as enhanced water solubility for parenteral administration at physiological pH compared to the parent compound, or it can enhance absorption from the digestive tract, or it can enhance drug stability for long-term storage
  • pharmaceutically acceptable excipient, carrier, or diluent refers to a pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material, involved in carrying or transporting the subject pharmaceutical agent from one organ, or portion of the body, to another organ, or portion of the body.
  • Each carrier must be “acceptable” in the sense of being compatible with the other ingredients of the formulation and not injurious to the patient.
  • materials which can serve as pharmaceutically-acceptable carriers include: sugars, such as lactose, glucose and sucrose; starches, such as corn starch and potato starch; cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; powdered tragacanth; malt; gelatin; talc; excipients, such as cocoa butter and suppository waxes; oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; glycols, such as propylene glycol; polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; esters, such as ethyl oleate and ethyl laurate; agar; buffering agents, such as magnesium hydrox
  • wetting agents such as sodium lauryl sulfate, magnesium stearate, and polyethylene oxide-polypropylene oxide copolymer as well as coloring agents, release agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the compositions.
  • the term “subject” refers to any animal ( ⁇ ?. ., a mammal), including, but not limited to humans, non-human primates, rodents, and the like, which is to be the recipient of a particular treatment.
  • the terms “subject” and “patient” are used interchangeably herein in reference to a human subject.
  • the subject has experienced and/or exhibited at least one symptom of the disease or disorder to be treated with a compound disclosed herein and/or according to a herein disclosed method.
  • the subject has been identified or diagnosed as having a cancer having a KRas G12D mutation.
  • the subject has a cancer that is positive for a KRas G12D mutation.
  • the subject is suspected of having a KRas G12D gene-associated cancer.
  • an assay is used to determine whether the subject has KRas G12D mutation using a sample (e.g., a biological sample or a biopsy sample (e , a paraffin-embedded biopsy sample) from a subject
  • a sample e.g., a biological sample or a biopsy sample (e , a paraffin-embedded biopsy sample) from a subject
  • a sample e.g., a biological sample or a biopsy sample (e , a paraffin-embedded biopsy sample) from a subject
  • a sample e.g., a biological sample or a biopsy sample (e , a paraffin-embedded biopsy sample) from a subject
  • Various techniques may be employed, for example, next generation sequencing, immunohistochemistry, fluorescence microscopy, break apart FISH analysis, Southern blotting, Western blotting, FACS analysis, Northern blotting, and PCR-based amplification (e.g., RT-PCR and quantitative real-time
  • treatment refers to a method of reducing, delaying or ameliorating such a condition before or after it has occurred.
  • Treatment may be directed at one or more effects or symptoms of a disease and/or the underlying pathology.
  • Treatment is aimed to obtain beneficial or desired results including, but not limited to, therapeutic benefit and/or a prophylactic benefit.
  • therapeutic benefit is meant eradication or amelioration of the underlying disorder being treated.
  • a therapeutic benefit is achieved with the eradication or amelioration of one or more of the physiological symptoms associated with the underlying disorder such that an improvement is observed in the patient, notwithstanding that the patient can still be afflicted with the underlying disorder.
  • the pharmaceutical compounds and/or compositions can be administered to a patient at risk of developing a particular disease, or to a patient reporting one or more of the physiological symptoms of a disease, even though a diagnosis of this disease may not have been made.
  • the treatment can be any reduction and can be, but is not limited to, the complete ablation of the disease or the symptoms of the disease.
  • reduction or degree of prevention is at least 5%, 10%, 20%, 40%, 50%, 60%, 80%, 90%, 95%, or 100% as measured by any standard technique.
  • the term "therapeutic effect” refers to a therapeutic benefit and/or a prophylactic benefit as described herein.
  • a prophylactic effect includes delaying or eliminating the appearance of a disease or condition, delaying or eliminating the onset of symptoms of a disease or condition, slowing, halting, or reversing the progression of a disease or condition, or any combination thereof.
  • Compounds of the present invention are, subsequent to their preparation, preferably isolated and purified to obtain a composition containing an amount by weight equal to or greater than 95% (“substantially pure”), which is then used or formulated as described herein. In certain embodiments, the compounds of the present invention are more than 99% pure.
  • Solvates and polymorphs of the compounds of the invention are also contemplated herein. Solvates of the compounds of the present invention include, for example, hydrates.
  • an “isolated” or “substantially isolated” molecule is one that has been manipulated to exist in a higher concentration than in nature or has been removed from its native environment.
  • a subject antibody is isolated, purified, substantially isolated, or substantially purified when at least 10%, or 20%, or 40%, or 50%, or 70%, or 90% of non-subject-antibody materials with which it is associated in nature have been removed.
  • RNA molecules include in vivo or in vitro RNA replication products of DNA and RNA molecules.
  • Isolated nucleic acid molecules further include synthetically produced molecules.
  • vector molecules contained in recombinant host cells are also isolated. Thus, not all “isolated” molecules need be “purified.”
  • the term “purified” when used in reference to a molecule it means that the concentration of the molecule being purified has been increased relative to molecules associated with it in its natural environment, or environment in which it was produced, found or synthesized.
  • Naturally associated molecules include proteins, nucleic acids, lipids and sugars but generally do not include water, buffers, and reagents added to maintain the integrity or facilitate the purification of the molecule being purified.
  • a substance may be 5% or more, 10% or more, 20% or more, 30% or more, 40% or more, 50% or more, 60% or more, 70% or more, 80% or more, 90% or more, 95% or more, 98% or more, 99% or more, or 100% pure when considered relative to its contaminants.
  • Ci-4 alkyl is intended to encompass, Ci, C2, C3, C4, C1-3, C1-2, C2-4, C3-4 and C2-3 alkyl groups.
  • alkyl refers to a straight or branched hydrocarbon chain radical consisting solely of carbon and hydrogen atoms, containing no unsaturation, having from one to ten carbon atoms (e. ., C1-10 alkyl).
  • a numerical range such as “1 to 10” refers to each integer in the given range; e.g., “1 to 10 carbon atoms” means that the alkyl group can consist of 1 carbon atom, 2 carbon atoms, 3 carbon atoms, etc., up to and including 10 carbon atoms, although the present definition also covers the occurrence of the term "alkyl” where no numerical range is designated.
  • alkyl can be a Ci-6 alkyl group.
  • alkyl groups have 1 to 10, 1 to 8, 1 to 6, or 1 to 3 carbon atoms.
  • Representative saturated straight chain alkyls include, but are not limited to, -methyl, - ethyl, -n-propyl, -n-butyl, -n-pentyl, and -n-hexyl; while saturated branched alkyls include, but are not limited to, -isopropyl, -sec-butyl, -isobutyl, -tert-butyl, -isopentyl, 2-methylbutyl, 3- methylbutyl, 2-m ethylpentyl, 3 -methylpentyl, 4-m ethylpentyl, 2-methylhexyl, 3 -methylhexyl, 4- methylhexyl, 5 -methylhexyl, 2,3 -di
  • alkyl is attached to the parent molecule by a single bond.
  • an alkyl group is optionally substituted by one or more of substituents which independently include: acyl, alkyl, alkenyl, alkynyl, alkoxy, alkylaryl, cycloalkyl, aralkyl, aryl, aryloxy, amino, amido, amidino, imino, azide, carbonate, carbamate, carbonyl, heteroalkyl, heteroaryl, heteroarylalkyl, heterocycloalkyl, hydroxy, cyano, halo, haloalkoxy, haloalkyl, ester, ether, mercapto, thio, alkylthio, arylthio, thiocarbonyl, nitro, oxo, phosphate, phosphonate, phosphinate, silyl, sulfinyl, sulfonyl, sulfona
  • a substituted alkyl can be selected from fluoromethyl, difluoromethyl, trifluoromethyl, 2-fluoroethyl, 3 -fluoropropyl, hydroxymethyl, 2-hydroxy ethyl, 3- hydroxypropyl, benzyl, and phenethyl.
  • aromatic refers to cyclic, aromatic hydrocarbon groups that have 1 to 2 aromatic rings, including monocyclic or bicyclic groups such as phenyl, biphenyl or naphthyl. Where containing two aromatic rings (bicyclic, etc.), the aromatic rings of the aryl group may be joined at a single point (e g., biphenyl), or fused (e.g., naphthyl).
  • the aryl group may be optionally substituted by one or more substituents, e g., 1 to 5 substituents, at any point of attachment.
  • substituents include, but are not limited to, H, halogen, -O-C 1 -C 6 alkyl, C 1 -C 6 alkyl, -C 1 -C 6 alkenyl, -OC 1 -C 6 alkynyl, -C 1 -C 6 alkenyl, -C 1 -C 6 alkynyl, -OH, -OP(O)(OH) 2 , -OC(O)C 1 -C 6 alkyl, -C(O)C 1 -C 6 alkyl, -OC(O)OC 1 - C 6 alkyl, NH 2 , NH(CI-C 6 alkyl), N(CI-C 6 alkyl) 2 , -S(O) 2 -C 1 -C 6 alkyl, -S(O)NHC 1 -C 6 alkyl, and S(O)N(CI-C6 alkyl) 2 .
  • the substituents can themselves be optionally substituted.
  • the aryl groups herein defined may have an unsaturated or partially saturated ring fused with a fully unsaturated ring.
  • Exemplary ring systems of these aryl groups include indanyl, indenyl, tetrahydronaphthalenyl, and tetrahydrobenzoannulenyl.
  • halogen refers to fluorine (F), chlorine (Cl), bromine (Br) and iodine (I).
  • heteroaryl or “hetero-aromatic” refer to groups having 5 to 14 ring atoms, preferably 5, 6, 9, or 10 ring atoms; having 6, 10, or 14 p electrons shared in a cyclic array; and having, in addition to carbon atoms, from one to three heteroatoms per ring selected from the group consisting of N, O, and S.
  • heteroaryl groups include acridinyl, azocinyl, benzimidazolyl, benzofuranyl, benzothiofuranyl, benzothiophenyl, benzoxazolyl, benzthiazolyl, benztriazolyl, benztetrazolyl, benzisoxazolyl, benzisothiazolyl, benzimidazolinyl, carbazolyl, 4aH-carbazolyl, carbolinyl, chromanyl, chromenyl, cinnolinyl, 6,7-dihydro-5H-pyrrolo[l,2- a]imidazole, furanyl, furazanyl, imidazolinyl, imidazolyl, 1H- indazolyl, indolenyl, indolinyl, indolizinyl, indolyl, 3H-indolyl, isobenzofuranyl, isochromanyl
  • Heteroaryl also refers to bicyclic ring systems having, in addition to carbon atoms, from one to three heteroatoms per ring selected from the group consisting of N, O, and S in which one ring system may be saturated or partially saturated.
  • Heteroaryl groups may be substituted with 0, 1 , 2, 3, or 4 substituents independently selected from alkenyl, alkoxy, alkoxyalkoxy, alkoxyalkyl, alkoxycarbonyl, alkoxycarbonylalkyl, alkyl, alkylcarbonyl, alkylcarbonylalkyl, alkylcarbonyloxy, alkylthio, alkylthioalkyl, alkynyl, carboxy, carboxyalkyl, cyano, cyanoalkyl, formyl, haloalkoxy, haloalkyl, halogen, hydroxy, hydroxyalkyl, mercapto, nitro, -NZ1Z2, and (NZiZ2)carbonyl.
  • substituents independently selected from alkenyl, alkoxy, alkoxyalkoxy, alkoxyalkyl, alkoxycarbonyl, alkoxycarbonylalkyl, alkyl, alkylcarbonyl, alkyl
  • NZ1Z2 means two groups, Zi and Z2, which are appended to the parent molecular moiety through a nitrogen atom.
  • Zi and Z2 are each independently selected from the group consisting of hydrogen, alkyl, alkylcarbonyl, and formyl.
  • Representative examples of NZ1Z2 include, but are not limited to, amino, methylamino, acetylamino, and acetylmethylamino.
  • alkoxy refers to an -O-alkyl radical
  • cycloalkyl and “carbocyclyl” each refers to a monocyclic or polycyclic radical that contains only carbon and hydrogen, and can be saturated or partially unsaturated. Unless stated otherwise in the specification, the term is intended to include both substituted and unsubstituted cycloalkyl groups. Partially unsaturated cycloalkyl groups can be termed "cycloalkenyl” if the carbocycle contains at least one double bond, or "cycloalkynyl” if the carbocycle contains at least one triple bond. Cycloalkyl groups include groups having from 3 to 13 ring atoms (i.e., C3-13 cycloalkyl).
  • a numerical range such as “3 to 10" refers to each integer in the given range; e.g., "3 to 13 carbon atoms” means that the cycloalkyl group can consist of 3 carbon atoms, 4 carbon atoms, 5 carbon atoms, etc., up to and including 13 carbon atoms.
  • the term "cycloalkyl” also includes bridged and spiro-fused cyclic structures containing no heteroatoms.
  • the term also includes monocyclic or fused-ring polycyclic (i.e., rings which share adjacent pairs of ring atoms) groups.
  • Polycyclic aryl groups include bicycles, tricycles, tetracycles, and the like.
  • cycloalkyl can be a C3-8 cycloalkyl radical. In some embodiments, “cycloalkyl” can be a C3-5 cycloalkyl radical.
  • Illustrative examples of cycloalkyl groups include, but are not limited to the following moieties: C3-6 carbocyclyl groups include, without limitation, cyclopropyl (C3), cyclobutyl (C4), cyclopentyl (C5), cyclopentenyl (C5), cyclohexyl (C 6 ), cyclohexenyl (C 6 ), cyclohexadienyl (C 6 ) and the like.
  • C3-7 carbocyclyl groups include norbomyl (C7).
  • Examples of C3-8 carbocyclyl groups include the aforementioned C3-7 carbocyclyl groups as well as cycloheptyl (C?), cycloheptadienyl (C7), cycloheptatrienyl (C7), cyclooctyl (Cs), bicyclo[2.2.1 ]heptanyl, bicyclo[2.2.2]octanyl, and the like.
  • C3-13 carbocyclyl groups include the aforementioned C3-8 carbocyclyl groups as well as octahydro-lH indenyl, decahydronaphthalenyl, spiro[4.5]decanyl and the like.
  • a cycloalkyl group can be optionally substituted by one or more substituents which independently include: acyl, alkyl, alkenyl, alkynyl, alkoxy, alkylaryl, cycloalkyl, aralkyl, aryl, aryloxy, amino, amido, amidino, imino, azide, carbonate, carbamate, carbonyl, heteroalkyl, heteroaryl, heteroarylalkyl, heterocycloalkyl, hydroxy, cyano, halo, haloalkoxy, haloalkyl, ester, ether, mercapto, thio, alkylthio, arylthio, thiocarbonyl, nitro, oxo, phosphate, phosphonate, phosphinate, silyl, sulfinyl, sulfonyl, sulfonamidyl, sulfoxyl, s
  • cycloalkenyl and “cycloalkynyl” mirror the above description of “cycloalkyl” wherein the prefix “alk” is replaced with “alken” or “alkyn” respectively, and the parent “alkenyl” or “alkynyl” terms are as described herein.
  • a cycloalkenyl group can have 3 to 13 ring atoms, such as 5 to 8 ring atoms.
  • a cycloalkynyl group can have 5 to 13 ring atoms.
  • heterocycloalkyl refers to a cycloalkyl radical, which have one or more skeletal chain atoms selected from an atom other than carbon, e.g., O, N, S, P or combinations thereof. Unless stated otherwise in the specification, the term is intended to include both substituted and unsubstituted heterocycloalkyl groups.
  • heterocycloalkyl examples include 2-hydroxy-aziridin-l-yl, 3-oxo-l-oxacyclobutan-2-yl, 2,2-dimethyl- tetrahydrofuran-3-yl, 3 -carboxy -morpholin-4-yl, l-cyclopropyl-4-methyl-piperazin-2-yl.
  • heterocycle refers to fully saturated or partially unsaturated cyclic groups, for example, 3 to 7 membered monocyclic, 7 to 12 membered bicyclic, or 10 to 15 membered spirocyclic or tricyclic ring systems, which have at least one heteroatom (selected from the group consisting of N, O, and S) in at least one ring, wherein 0, 1, 2 or 3 atoms of each ring may be substituted by a substituent.
  • heteroatom selected from the group consisting of N, O, and S
  • Each ring of the heterocyclic group containing a heteroatom may have 1, 2, 3 or 4 heteroatoms selected from nitrogen atoms, oxygen atoms and/or sulfur atoms, where the nitrogen and sulfur heteroatoms may optionally be oxidized and the nitrogen heteroatoms may optionally be quatemized.
  • the heterocyclic group may be attached at any heteroatom or carbon atom of the ring or ring system. A heterocyclic group is optionally substituted.
  • heterocyclic groups include, but not limited to, epoxy, azetidinyl, aziridinyl, tetrahydrofuranyl, tetrahydropyranyl, pyrrolidinyl, pyrrolidinonyl, piperidinyl, piperazinyl, imidazolidinyl, imidazopyridinyl, thiazolidinyl, dithianyl, trithianyl, dioxolanyl, oxazolidinyl, oxazolidinonyl, decahydroquinolinyl, piperidonyl, 4-piperidinonyl, quinuclidinyl, thiomorpholinyl, thiomorpholinyl 1,1 dioxide, morpholinyl, azepanyl, oxazepanyl, azabicyclohexanyls, azabicycloheptanyl, azabicyclooctanyls, azabicyclononany
  • the invention is based in part on the discovery of KRas inhibitors, in particular KRas (G12D) inhibitors, that selectively target, bind to, inhibit or modulate the activity of KRas.
  • KRas inhibitors in particular KRas (G12D) inhibitors
  • the novel compounds exhibit favorable potency and selectivity as well as pharmacokinetics profiles suitable for development into an orally administered therapeutic agent for treating diseases and disorders associated with or related to KRas activities, such as various types of cancer.
  • the invention generally relates to a compound having the structural Formula (I):
  • R 1 is XR 11 or NR 12 R 13 , wherein X is O, S or absent, R 11 is (CH2)iR 14 , and z is an integer selected from 0-6 (e.g., 0, 1, 2, 3, 4, 5 or 6), wherein (CHi); is optionally substituted;
  • R 2 is an unsubstituted or substituted 6- to 10-membered (e.g., 6-, 7-, 8-, 9- or 10- membered) unsaturated monocyclic or bicyclic ring, comprising 0-5 e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S;
  • R 3 is L-R 3 , wherein
  • L is a single bond or NR(CH2)k, wherein k is an integer selected from 0-3 (e.g., 0, 1, 2 or 3);
  • R 3 is an unsubstituted or substituted, 3- to 10-membered (e.g., 3-, 4-, 5-, 6-, 7-, 8- , 9- or 10-membered) saturated or unsaturated monocyclic, bicyclic or bridged ring moiety that comprises 0-5 (e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S; each of R 4 and R 5 is independently selected from the group consisting of H, halogen, CN, OH, unsubstituted or substituted Ci-4 alkyl, unsubstituted or substituted Ci-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R”, C(O)OR, unsubstituted or substituted 3- to 8- membered (e.g., 6-, 7- or 8-membered) carbocycle, and unsubstituted or substituted 3- to 8- membered (e.g
  • R is H, unsubstituted or substituted C1-4 alkoxy, unsubstituted or substituted C1.4 alkyl, or unsubstituted or substituted 4- to 6-membered (e.g., 4-, 5- or 6-membered) carbocyclic ring. [0061] In certain embodiments, at least one of R 4 and R 5 is not H.
  • one of R 4 and R 5 is H and the other is not H.
  • neither R 4 nor R 5 is H.
  • At least one of R 4 and R 5 is not H.
  • R 4 is halogen, CN, OH, unsubstituted or substituted C1-4 alkyl, unsubstituted or substituted C1-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R” or C(O)OR.
  • R 5 is halogen, CN, OH, unsubstituted or substituted C1-4 alkyl, unsubstituted or substituted C1-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R” or C(O)OR.
  • R 5 is an unsubstituted or substituted 3- to 8-membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) carbocycle.
  • R 5 is an unsubstituted or substituted 3- to 8-membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) heterocycle.
  • R 4 is H and R 5 is an unsubstituted or substituted 3- to 6- membered (e.g., 3-, 4-, 5- or 6-membered) carbocycle.
  • R 4 is H and R 5 is an unsubstituted or substituted 4- to 7- membered (e.g., 4-, 5-, 6- or 7-membered) heterocycle.
  • one of R 4 and R 5 is a halogen and the other is selected from halogen, CN, methyl and ethyl.
  • one of R 4 and R 5 is a halogen and the other is selected from OH, OCH 3 , C(O)NH 2 and C(O)NHCH 3 .
  • one of R 4 and R 5 is halogen, CN, methyl and ethyl and the other is an unsubstituted or substituted 3- to 8-membered (e.g, 3-, 4-, 5-, 6-, 7- or 8-membered) carbocycle.
  • one of R 4 and R 5 is halogen, CN, methyl and ethyl and the other is an unsubstituted or substituted 3- to 8-membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) heterocycle.
  • one of R 4 and R 5 is unsubstituted or substituted cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl.
  • one of R 4 and R 5 is unsubstituted or substituted tetrahydrofuran, tetrahydropyran, cyclic sulfone, cyclic sulfonamide, cyclic amide, cyclic carbamate, azetidine, pyrrolidine, piperidine, pyrazole, imidazole, 1, 3 -oxazole, 1,2-oxazole, 1,3- thiazole, 1, 2,4-triazole, 1,2, 3 -triazole, 1. 3,4-oxadiazole, 1,3,4-thiadiazole, furan, pyridine, pyrimidine, pyridazine, pyrazine, or triazine.
  • R 1 is X(CH 2 )iR 14 , wherein X is O.
  • R 14 is a C3-6 carbocyclic ring substituted with 0-5 (e. ., 0, 1,
  • R 15 is independently selected from D, halo, C1-3 alkyl optionally substituted with one or more of halo, OH, NRR’, CN, CONRR’ or SO 2 NRR’.
  • z is 1.
  • R 14 is C3-4 cycloalkyl ring substituted with 0-5 (e.g., 0, 1, 2,
  • R 1 has the structure: wherein R x is OH, halo, NRR’, CN, CONRR’ or SO 2 NRR’.
  • R 15 is F, m is 0, 1 or 2, and R x is CH 2 OH.
  • R 1 has the structure: wherein R x is OH, halo, NRR’, CN, CONRR’ or SO2NRR’.
  • R 15 is F
  • m is 0, 1 or 2
  • CH2OH is H
  • R 1 is NR 12 R 13 .
  • X is absent and R 1 is (CH2)iR 14 .
  • R 14 is NRR’ .
  • R 14 comprises one or more of amino, amide, sulfonamide, and carboxylic ester groups.
  • R 14 is a mono- or bicyclic, unsubstituted or substituted C4-10 heterocyclic ring.
  • R 14 is a bicyclic, unsubstituted or substituted Ce-io heterocyclic ring.
  • R 14 has the structure of: wherein
  • Ring E is a 4- to 7-membered (e.g., 4-, 5-, 6- or 7-membered) unsubstituted or substituted monocyclic or bicyclic carbocyclic of heterocyclic ring;
  • W is O, S, N, NR, C(O), S(O) 2 , NHC(O), C(O)NH, OC(O), C(O)O, S(O) 2 NH, or NHS(O) 2 ;
  • R 13 is as defined herein.
  • R 1 is X(CH2);R 14 , wherein X is S.
  • R 1 is NR 12 R 13 .
  • R 1 has the structure of: wherein each of Ring C and Ring D is a 4- to 7-memebered heterocyclic ring;
  • R 19 is selected from the group consisting of: H, Ci-6 alkyl, and Ci-g alkoxy; each of g, p and q is independently 0, 1, 2 or 3, provided that if one of f and p is 0, the other is not 0 and if one of g and g is 0, the other is not 0; and each of m and n is independently 0, 1, 2 or 3.
  • each of T 1 and T 2 is CR 17 R 18 , each of g,p and q is 1, with R 1 having the structure of:
  • n is 1
  • R 16 is F.
  • X is O.
  • i is 1.
  • X is absent and R 1 is (CH2)iR 14 .
  • R 14 is NRR’.
  • R 14 comprises one or more of amino, amide, sulfonamide, and carboxylic ester groups.
  • R 14 is a mono- or bicyclic, unsubstituted or substituted C4-10 heterocyclic ring. In certain embodiments, R 14 is a monocyclic, unsubstituted or substituted C4-7 heterocyclic ring. In certain embodiments, R 14 is a bicyclic, unsubstituted or substituted Ce-io heterocyclic ring.
  • R 14 include:
  • R 13 and R 16 are as defined herein.
  • R 2 is an unsubstituted or substituted 6- to 10-membered (e.g., 5-, 6-, 7-, 8-, 9- or 10-membered) unsaturated bicyclic ring, comprising 0-5 (e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S.
  • R 2 has the structure of: wherein
  • Ring A is a 6-membered aryl or heteroaryl ring with 0-2 N atoms
  • R 2 is: wherein each of Z 1 and Z 2 is independently selected from CH and N.
  • each of Z 1 and Z 2 is CH.
  • Z 1 is CH and Z 2 is N.
  • Z 1 is Z and Z 2 is CH.
  • each of Z 1 and Z 2 is N.
  • R 2 is: wherein each of Z 1 and Z 2 is independently selected from CH and N; and each of Z 3 , Z 4 and Z 5 is independently selected from CR”, N, NR, O or S, provided that Ring B remains an aromatic ring, wherein R is H or a Ci-4 alkyl.
  • each of Z 1 and Z 2 is CH.
  • Z 1 is CH and Z 2 is N.
  • Z 1 is Z and Z 2 is CH.
  • each of Z 1 and Z 2 is N.
  • each of Z 3 , Z 4 and Z 5 is not a heteroatom.
  • at least one of Z 3 , Z 4 and Z 5 is a heteroatom.
  • R 2 groups include: wherein R 21 and R 22 are as defined herein.
  • R 2 include:
  • R 3 is an unsubstituted or substituted, saturated or unsaturated bicyclic or bridged ring moiety that comprises at least one N atom.
  • L is a single bond.
  • R 3 is: wherein
  • Y 1 is N or CR
  • Y 2 is (CH 2 )j, NR or CH 2 OCH 2 ;
  • Y 3 is NR, CR”, O or S; each R 31 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O) 2 NRR’, NRS(O) 2 R and NRS(O) 2 NRR’; each j is independently 0, 1, 2 or 3; and m is 0, 1, 2 or 3.
  • j is 2. In certain embodiments, j is 1. In certain embodiments, is 0. [00127] In certain embodiments, m is 2 Tn certain embodiments, m is 1 . Tn certain embodiments, m is 0.
  • Y 3 is NR.
  • Y 3 is CR”.
  • Y 3 is O.
  • Y 3 is S.
  • j is 2.
  • R 3 is:
  • Y 3 is NR.
  • Y 3 is CR”.
  • R 3 include:
  • R, R’ and m are as defined herein.
  • m is 0.
  • m is 1.
  • L is a single bond and R 3 is an unsubstituted or substituted, 3- to 10-membered (e.g., 3-, 4-, 5-, 6-, 7-, 8-, 9- or 10-membered) saturated or unsaturated monocyclic that comprises 0-3 (e.g., 0, 1, 2 or 3) heteroatoms selected from N, O and S.
  • R 3 is an unsubstituted or substituted, 6-membered saturated or unsaturated monocyclic that comprises 1-3 heteroatoms selected from N, O and S.
  • R 3 has the structure: wherein
  • Ring G is a 5- to 7-membered ( ⁇ ?.g., 5-, 6- or 7-membered) heterocyclic ring with 1-3 heteroatoms selected from N, O and S; each R 32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy,
  • NRC(O)R NRC(O)NRR’, C(O)R”, and C(O)OR, S(O) 2 NRR’, NRS(O) 2 R and NRS(O) 2 NRR’; and m is 0, 1, 2 or 3.
  • Ring G is 6-membered.
  • R 3 is an unsubstituted or substituted, 10- to 12-membered (e.g., 10-, 11- or 12-membered) saturated or unsaturated bicyclic that comprises 1-5 (e.g., 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S.
  • Rings F and H together form a hetero-bicyclic ring; each R 32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O) 2 NRR’, NRS(O) 2 R and NRS(O) 2 NRR’; and m is 0, 1, 2 or 3.
  • Ring F is 7-membered and Ring H is 5-membered.
  • L is NR(CH2)k and R 3 is NR(CH2)kR 3 .
  • k is 0.
  • k is 1.
  • R 3 is an unsubstituted or substituted, 3- to 6-membered (e.g., 3-, 4-, 5-, 6-membered) monocyclic ring moiety that comprises 0-3 (e.g., 0, 1, 2 or 3) heteroatoms selected from N, O and S.
  • R 3 has the structure: wherein
  • Ring J is a 5- to 7-membered (e.g., 5-, 6- or 7-membered) carbocyclic or heterocyclic ring with 0-3 (e.g., 0, 1 , 2 or 3) heteroatoms selected from N, O and S; each R 32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O) 2 NRR’, NRS(O) 2 R and NRS(O) 2 NRR’; and m is 0, 1, 2 or 3.
  • each R 32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6
  • Ring J is 6-membered.
  • the compound has the structural formula:
  • the compound has the structural formula: wherein
  • Ring K is a C3-4 cycloalkyl
  • R x is OH, halo, NRR’, CN, CONRR’ or SO 2 NRR’; and m is 0, 1, 2 or 3.
  • the compound has the structural formula: wherein
  • each R 32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted C1-6 alkyl, and unsubstituted or substituted C1-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O) 2 NRR’, NRS(O) 2 R and NRS(O) 2 NRR’; and m is 0, 1, 2 or 3.
  • the compound has the structural formula:
  • R 3 is an unsubstituted or substituted, 3- to 6-membered (e.g., 3-, 4-, 5-, 6-membered) monocyclic ring moiety that comprises 0-3 (e.g., 0, 1, 2 or 3) heteroatoms selected from N, O and S; and k is 0, 1 or 2.
  • a compound of the invention is selected from Table 1.
  • a pro-drug comprises an ester, a carbonate and/or a carbamate moiety.
  • R 2 and R 3 in formula (I) comprises an ester, a carbonate and/or a carbamate moiety.
  • ester, carbonate and carbamate moi eties are selected from:
  • ester, carbonate and carbamate moi eties are selected from:
  • a compound of invention has one or more deuterium atoms in place of hydrogen. In certain embodiments, a compound of invention has one deuterium atom in place of a hydrogen atom.
  • the invention generally relates to a pharmaceutical composition
  • a pharmaceutical composition comprising a compound disclosed herein and a pharmaceutically acceptable excipient, carrier, or diluent.
  • the pharmaceutical composition is suitable for oral administration.
  • the invention generally relates to a unit dosage form comprising a pharmaceutical composition disclosed herein.
  • the unit dosage form is in the form of a tablet or capsule.
  • Pharmaceutically acceptable carriers, adjuvants and vehicles that may be used in the pharmaceutical compositions of this invention include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, polyethylene glycol and wool fat.
  • compositions of the invention include those suitable for oral, rectal, nasal, topical (including buccal and sublingual), vaginal or parenteral (including subcutaneous, intramuscular, intravenous and intradermal) administration.
  • the compound of the formulae herein is administered transdermally (e.g., using a transdermal patch).
  • Other formulations may conveniently be presented in unit dosage form, e g., tablets and sustained release capsules, and in liposomes, and may be prepared by any methods well known in the art of pharmacy. See, for example, Remington’s Pharmaceutical Sciences, Mack Publishing Company, Philadelphia, PA (17th ed. 1985).
  • Such preparative methods include the step of bringing into association with the molecule to be administered ingredients such as the carrier that constitutes one or more accessory ingredients.
  • ingredients such as the carrier that constitutes one or more accessory ingredients.
  • the compositions are prepared by uniformly and intimately bringing into association the active ingredients with liquid carriers, liposomes or finely divided solid carriers or both, and then if necessary, shaping the product.
  • Solid dosage forms for oral administration include capsules, tablets, pills, powders, and granules.
  • the compounds described herein or derivatives thereof are admixed with at least one inert customary excipient (or carrier) such as sodium citrate or dicalcium phosphate or
  • fillers or extenders as for example, starches, lactose, sucrose, glucose, mannitol, and silicic acid,
  • binders as for example, carboxymethylcellulose, alginates, gelatin, polyvinylpyrrolidone, sucrose, and acacia
  • humectants as for example, glycerol
  • disintegrating agents as for example, agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain complex silicates, and sodium carbonate
  • solution retarders as for example, paraffin
  • absorption accelerators as for example
  • the dosage forms may also comprise buffering agents.
  • Solid compositions of a similar type may also be employed as fdlers in soft and hard- filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethyleneglycols, and the like.
  • Solid dosage forms such as tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells, such as enteric coatings and others known in the art.
  • Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, solutions, suspensions, syrups, and elixirs.
  • the liquid dosage forms may contain inert diluents commonly used in the art, such as water or other solvents, solubilizing agents, and emulsifiers, such as for example, ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propyleneglycol, 1 ,3- butyleneglycol, dimethylformamide, oils, in particular, cottonseed oil, groundnut oil, corn germ oil, olive oil, castor oil, sesame oil, glycerol, tetrahydrofurfuryl alcohol, polyethyleneglycols, and fatty acid esters of sorbitan, or mixtures of these substances, and the like.
  • inert diluents commonly used in the art, such as water or other solvent
  • the invention generally relates to a method for inhibiting cell proliferation in vitro or in vivo, comprising contacting a cell with an effective amount of a compound disclosed herein.
  • the invention generally relates to a method for inhibiting KRas(G12D) activity in a cell, comprising contacting the cell with a compound disclosed herein.
  • the invention generally relates to a method for treating a disease or disorder mediated by a Ras mutant protein, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
  • the invention generally relates to a method for treating or reducing cancer, or a related disease or disorder, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
  • the invention generally relates to a method for treating or reducing cancer, or a related disease or disorder, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
  • the invention generally relates to use of a compound disclosed herein, and a pharmaceutically acceptable excipient, carrier, or diluent, in preparation of a medicament for treating a disease or disorder.
  • diseases or disorders that may be treated or reduced by compositions or methods of the invention include, but are not limited to, tumors, cancers, autoimmune diseases, macroglob id in emi a, and the like.
  • the cancer is selected from the group consisting of carcinoma, squamous carcinoma, adenocarcinoma, sarcoma, leukemia, neuroma, melanoma, and lymphoma.
  • cancers targeted in the present invention include, but are not particularly Limited to, head and neck cancer, digestive organ cancer (esophageal cancer, stomach cancer, duodenal cancer, liver cancer, biliary cancer (e.g., gallbladder and bile duct cancer), pancreatic cancer, colorectal cancer (e.g., colon cancer, and rectal cancer), etc.), lung cancer (e.g., non- small-cell lung cancer, small-cell lung cancer, and mesothelioma), breast cancer, genital cancer (ovarian cancer, uterine cancer (e.g., cervical cancer and endometrial cancer), etc.), urological cancer (e.g., kidney cancer, bladder cancer, prostate cancer, and testicular tumor), hematopoietic tumor (e.g., leukemia, lymphoma, malignant lymphoma, and multiple myeloma), sarcoma (e.g., osteosarcoma, and soft-tissue sar
  • digestive organ cancer
  • squamous carcinoma is a cancer of uterine cervix, tarsus, conjunctiva, vagina, lung, oral cavity, skin, bladder, tongue, larynx or esophagus.
  • adenocarcinoma is a cancer of prostate, small intestine, endometrium, uterine cervix, large intestine, lung, pancreas, esophagus, rectum, uterus, stomach, breast or ovary.
  • tumor is rectal cancer, colon cancer, colorectal cancer, pancreatic cancer, lung cancer, breast cancer leukemia or uterine cancer.
  • the cancer is selected from the group consisting of pancreatic cancer, colorectal cancer, lung cancer, endometrial cancer, appendix cancer, cholangiocarcinoma, bladder urothelial cancer, ovarian cancer, gastric cancer, breast cancer, bile duct cancer, and a hematologic malignancy.
  • a subject suffering from any of the disease selected from the above does not have to have KRAS G12D mutant protein. In certain embodiments, a subject suffering from any of the disease selected from the above has KRAS G12D mutant protein.
  • the subject has a mutation of KRAS, HRAS and/or NRAS.
  • the amount of the active compound administered will be dependent on the subject being treated, the severity of the disorder or condition, the route of administration, the disposition of the compound and the discretion of the prescribing physician. In some instances, dosage levels below the lower limit of the aforesaid range may be more than adequate, while in other cases still larger doses may be used without causing any harmful side effect, with such larger doses typically divided into several smaller doses for administration throughout the day.
  • Any appropriate route of administration can be employed, for example, oral, intramuscular, intravenous, transdermal, subcutaneous, sublingual, parenteral, nasal, pulmonary, inhalational, buccal, intraperintoneal, rectal, intrapleural, and intrathecal administration. Most suitable means of administration for a particular patient will depend on the nature and severity of the disease or condition being treated or the nature of the therapy being used and on the nature of the active compound.
  • compositions of the present invention suitable for oral administration may be presented as discrete units such as capsules, sachets or tablets each containing a predetermined amount of the active ingredient; as a powder or granules; as a solution or a suspension in an aqueous liquid or a non-aqueous liquid; or as an oil-in-water liquid emulsion or a water-in-oil liquid emulsion, or packed in liposomes and as a bolus, etc.
  • Soft gelatin capsules can be useful for containing such suspensions, which may beneficially increase the rate of compound absorption.
  • a tablet may be made by compression or molding, optionally with one or more accessory ingredients.
  • Compressed tablets may be prepared by compressing in a suitable machine the active ingredient in a free-flowing form such as a powder or granules, optionally mixed with a binder, lubricant, inert diluent, preservative, surface-active or dispersing agent.
  • Molded tablets may be made by molding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent.
  • the tablets optionally may be coated or scored and may be formulated so as to provide slow or controlled release of the active ingredient therein.
  • compositions of pharmaceutically active ingredients are known in the art and described in several issued US Patents, some of which include, but are not limited to, US Patent Nos. 4,369,172; and 4,842,866, and references cited therein.
  • Coatings can be used for delivery of compounds to the intestine (see, e.g., U.S. Patent Nos. 6,638,534, 5,217,720, and 6,569,457, 6,461,631, 6,528,080, 6,800,663, and references cited therein).
  • a useful formulation for the compounds of this invention is the form of enteric pellets of which the enteric layer comprises hydroxypropylmethylcellulose acetate succinate.
  • carriers that are commonly used include lactose and corn starch.
  • Lubricating agents such as magnesium stearate, are also typically added.
  • useful diluents include lactose and dried cornstarch.
  • aqueous suspensions are administered orally, the active ingredient is combined with emulsifying and suspending agents. If desired, certain sweetening and/or flavoring and/or coloring agents may be added.
  • compositions suitable for topical administration include lozenges comprising the ingredients in a flavored basis, usually sucrose and acacia or tragacanth; and pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia.
  • compositions suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which may contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non-aqueous sterile suspensions which may include suspending agents and thickening agents.
  • the formulations may be presented in unit-dose or multi-dose containers, for example, sealed ampules and vials, and may be stored in a freeze dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water for injections, immediately prior to use.
  • Extemporaneous injection solutions and suspensions may be prepared from sterile powders, granules and tablets.
  • Such injection solutions may be in the form, for example, of a sterile injectable aqueous or oleaginous suspension.
  • This suspension may be formulated according to techniques known in the art using suitable dispersing or wetting agents (such as, for example, Tween 80) and suspending agents.
  • the sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example, as a solution in 1 ,3 -butanediol.
  • suitable vehicles and solvents that may be employed are mannitol, water, Ringer's solution and isotonic sodium chloride solution.
  • sterile, fixed oils are conventionally employed as a solvent or suspending medium.
  • any bland fixed oil may be employed including synthetic mono- or diglycerides.
  • Fatty acids, such as oleic acid and its glyceride derivatives are useful in the preparation of injectables, as are natural pharmaceutically-acceptable oils, such as olive oil or castor oil, especially in their polyoxyethylated versions.
  • These oil solutions or suspensions may also contain a long-chain alcohol diluent or dispersant.
  • liposomes are generally derived from phospholipids or other lipid substances. Liposomes are formed by mono- or multi-lamellar hydrated liquid crystals that are dispersed in an aqueous medium. Any non-toxic, physiologically acceptable and metabolizable lipid capable of forming liposomes can be used.
  • the present compositions in liposome form can contain, in addition to a compound of the present invention, stabilizers, preservatives, excipients, and the like.
  • the preferred lipids are the phospholipids and the phosphatidyl cholines (lecithins), both natural and synthetic. Methods to form liposomes are known in the art. See, for example, Prescott, Ed., Methods in Cell Biology, Volume XIV, Academic Press, New York, N.Y. (1976), p. 33 et seq.
  • compositions of this invention may be administered in the form of suppositories for rectal administration.
  • These compositions can be prepared by mixing a compound of this invention with a suitable non-irritating excipient which is solid at room temperature but liquid at the rectal temperature and therefore will melt in the rectum to release the active components.
  • suitable non-irritating excipient include, but are not limited to, cocoa butter, beeswax and polyethylene glycols.
  • compositions of this invention may be administered by nasal aerosol or inhalation.
  • Such compositions are prepared according to techniques well-known in the art of pharmaceutical formulation and may be prepared as solutions in saline, employing benzyl alcohol or other suitable preservatives, absorption promoters to enhance bioavailability, fluorocarbons, and/or other solubilizing or dispersing agents known in the art.
  • Topical administration of the pharmaceutical compositions of this invention is especially useful when the desired treatment involves areas or organs readily accessible by topical application.
  • the pharmaceutical composition should be formulated with a suitable ointment containing the active components suspended or dissolved in a carrier.
  • Carriers for topical administration of the compounds of this invention include, but are not limited to, mineral oil, liquid petroleum, white petroleum, propylene glycol, polyoxyethylene polyoxypropylene compound, emulsifying wax and water.
  • the pharmaceutical composition can be formulated with a suitable lotion or cream containing the active compound suspended or dissolved in a carrier.
  • Suitable carriers include, but are not limited to, mineral oil, sorbitan monostearate, polysorbate 60, cetyl esters wax, cetearyl alcohol, 2-octyldodecanol, benzyl alcohol and water.
  • the pharmaceutical compositions of this invention may also be topically applied to the lower intestinal tract by rectal suppository formulation or in a suitable enema formulation. Topically-transdermal patches and iontophoretic administration are also included in this invention. [00199] Methods of treatment disclosed herein ay be employed in combination with or in addition to other therapies. In certain embodiments, the subject being treated is further administered one or more of chemotherapy, radiotherapy, targeted therapy, immunotherapy, and hormonal therapy.
  • Exemplary additional therapeutically active agents include, but are not limited to, small organic molecules such as drug compounds, e.g., compounds approved by the U.S. Food and Drug Administration (FDA) as provided in the Code of Federal Regulations (CFR), peptides, proteins, carbohydrates, monosaccharides, oligosaccharides, polysaccharides, nucleoproteins, mucoproteins, lipoproteins, synthetic polypeptides or proteins, small molecules linked to proteins, glycoproteins, steroids, nucleic acids, DNAs, RNAs, nucleotides, nucleosides, oligonucleotides, antisense oligonucleotides, lipids, hormones, vitamins and cells.
  • FDA U.S. Food and Drug Administration
  • CFR Code of Federal Regulations
  • a compound of the invention may be administered in combination with endocrine therapy, e.g., agents such as letrozole, fulvestrant, tamoxifen, exemestane, or anastrozole.
  • endocrine therapy e.g., agents such as letrozole, fulvestrant, tamoxifen, exemestane, or anastrozole.
  • a compound of the invention may be administered in combination with a chemotherapeutic agent, e.g., docetaxel, paclitaxel, cisplatin, carboplatin, capecitabine, gemcitabine or vinorelbine.
  • a compound of the invention may be administered in combination with an anti-HER2 agent, e.g., trastuzumab or pertuzumab.
  • the method disclosed herein is in combination with one or more of immune check point blockade, co-signaling of T cells, and tumor targeting antibody therapies.
  • the method further comprises administering a chemotherapeutic agent to the subject.
  • the method further comprises administering a radiotherapy to the subject. In certain embodiments, the method further comprises administering a targeted therapy to the subject. In certain embodiments, the method further comprises administering an immunotherapy to the subject. In certain embodiments, the method further comprises administering hormonal therapy to the subject.
  • chemotherapeutic agent refers to a chemical compound useful in the treatment of cancer.
  • chemotherapeutic agents include Erlotinib (TARCEVA®, Genentech/OSI Pharm.), Bortezomib (VELCADE®, Millennium Pharm.), Fulvestrant (FASLODEX®, AstraZeneca), Sutent (SU1 1248, Pfizer), Letrozole (FEMARA®, Novartis), Imatinib mesylate (GLEEVEC®, Novartis), PTK787/ZK 222584 (Novartis), Oxaliplatin (Eloxatin®, Sanofi), 5-FU (5 -fluorouracil), Leucovorin, Rapamycin (Sirolimus, RAPAMUNE®, Wyeth), Lapatinib (TYKERB®, GSK572016, Glaxo Smith Kline), Lonafarnib (SCH 66336), Sorafenib (
  • dynemicin including dynemicin A; bisphosphonates, such as clodronate; an esperamicin; as well as neocarzinostatin chromophore and related chromoprotein enediyne antibiotic chromophores), aclacinomysins, actinomycin, authramycin, azaserine, bleomycins, cactinomycin, carabicin, caminomycin, carzinophilin, chromomycinis, dactinomycin, daunorubicin, detorubicin, 6- diazo-5-oxo-L- norleucine, ADRIAMYCIN® (doxorubicin), morpholino-doxorubicin, cyanomorpholinodoxorubicin, 2-pyrrolino-doxorubicin and deoxydoxorubicin), epirubicin, e
  • NAVELBTNE® (vinorelbine); novantrone; teniposide; edatrexate; daunomycin; aminopterin; capecitabine (XELODA®); ibandronate; CPT-11; topoisomerase inhibitor RFS 2000; difluoromethylomithine (DMFO); retinoids such as retinoic acid; and pharmaceutically acceptable salts, acids and derivatives of any of the above.
  • Examples of the second (or further) agent or therapy may include, but are not limited to, immunotherapies (e.g. PD-1 inhibitors (pembrolizumab, nivolumab, cemiplimab), PD-L1 inhibitors (atezolizumab, avelumab, durvalumab), CTLA4 antagonist, cell signal transduction inhibitors (e.g., imatinib, gefitinib, bortezomib, erlotinib, sorafenib, sunitinib, dasatinib, vorinostat, lapatinib, temsirolimus, nilotinib, everolimus, pazopanib, trastuzumab, bevacizumab, cetuximab, ranibizumab, pegaptanib, panitumumab and the like), mitosis inhibitors (e.g., paclitaxel, vincris), mito
  • Certain compounds of the present invention may exist in particular geometric or stereoisomeric forms.
  • the present invention contemplates all such compounds, including cisand Zra/rs-i somers, R- and 5-enantiomers, diastereomers, (D)-isomers, (L)-isomers, the racemic mixtures thereof, and other mixtures thereof, as falling within the scope of the invention.
  • Additional asymmetric carbon atoms may be present in a substituent such as an alkyl group. All such isomers, as well as mixtures thereof, are intended to be included in this invention.
  • Isomeric mixtures containing any of a variety of isomer ratios may be utilized in accordance with the present invention. For example, where only two isomers are combined, mixtures containing 50:50, 60:40, 70:30, 80:20, 90:10, 95:5, 96:4, 97:3, 98:2, 99: 1, or 100:0 isomer ratios are contemplated by the present invention. Those of ordinary skill in the art will readily appreciate that analogous ratios are contemplated for more complex isomer mixtures.
  • a particular enantiomer of a compound of the present invention may be prepared by asymmetric synthesis, or by derivation with a chiral auxiliary, where the resulting diastereomeric mixture is separated and the auxiliary group cleaved to provide the pure desired enantiomers.
  • the molecule contains a basic functional group, such as amino, or an acidic functional group, such as carboxyl, diastereomeric salts are formed with an appropriate optically-active acid or base, followed by resolution of the diastereomers thus formed by fractional crystallization or chromatographic methods well known in the art, and subsequent recovery of the pure enantiomers.
  • Isotopically-labeled compounds are also within the scope of the present disclosure.
  • an “isotopically-labeled compound” refers to a presently disclosed compound including pharmaceutical salts and prodrugs thereof, each as described herein, in which one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature.
  • isotopes that can be incorporated into compounds presently disclosed include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine and chlorine, such as 2 H, 3 H, 13 C, 14 C, 15 N, 18 O, 17 0, 31 P, 32 P, 35 S, 18 F, and 36 C1, respectively.
  • the compounds may be useful in drug and/or substrate tissue distribution assays.
  • Tritiated ( 3 H) and carbon- 14 ( 14 C) labeled compounds are particularly preferred for their ease of preparation and detectability.
  • substitution with heavier isotopes such as deuterium ( 2 H) can afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements and, hence, may be preferred in some circumstances.
  • Isotopically labeled compounds presently disclosed, including pharmaceutical salts, esters, and prodrugs thereof, can be prepared by any means known in the art.
  • substitution of normally abundant hydrogen ( 1 H) with heavier isotopes such as deuterium can afford certain therapeutic advantages, e.g., resulting from improved absorption, distribution, metabolism and/or excretion (ADME) properties, creating drugs with improved efficacy, safety, and/or tolerability. Benefits may also be obtained from replacement of normally abundant 12 C with 13 C. (See, WO 2007/005643, WO 2007/005644, WO 2007/016361, and WO 2007/016431.)
  • Stereoisomers e.g., cis and trans isomers
  • optical isomers of a presently disclosed compound e.g., R and S enantiomers
  • racemic, diastereomeric and other mixtures of such isomers are within the scope of the present disclosure.
  • Compounds of the present invention are, subsequent to their preparation, preferably isolated and purified to obtain a composition containing an amount by weight equal to or greater than 95% (“substantially pure”), which is then used or formulated as described herein. Tn certain embodiments, the compounds of the present invention are more than 99% pure.
  • Solvates and polymorphs of the compounds of the invention are also contemplated herein.
  • Solvates of the compounds of the present invention include, for example, hydrates.
  • Any appropriate route of administration can be employed, for example, parenteral, intravenous, subcutaneous, intramuscular, intraventricular, intracorporeal, intraperitoneal, rectal, or oral administration. Most suitable means of administration for a particular patient will depend on the nature and severity of the disease or condition being treated or the nature of the therapy being used and on the nature of the active compound.
  • compositions for parenteral injection comprise pharmaceutically-acceptable sterile aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, as well as sterile powders for reconstitution into sterile injectable solutions or dispersions just prior to use.
  • suitable aqueous and nonaqueous carriers, diluents, solvents or vehicles include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), carboxymethylcellulose and suitable mixtures thereof, vegetable oils (such as olive oil), and injectable organic esters such as ethyl oleate.
  • Proper fluidity may be maintained, for example, by the use of coating materials such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
  • compositions can also contain adjuvants such as preservative, wetting agents, emulsifying agents, and dispersing agents. Prevention of the action of microorganisms may be ensured by the inclusion of various antibacterial and antifungal agents, for example, paragen, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents such as sugars, sodium chloride, and the like. Prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents which delay absorption, such as aluminum monostearate and gelatin.
  • liposomes are generally derived from phospholipids or other lipid substances. Liposomes are formed by mono- or multi-lamellar hydrated liquid crystals that are dispersed in an aqueous medium. Any non-toxic, physiologically-acceptable and metabolizable lipid capable of forming liposomes can be used.
  • the present compositions in liposome form can contain, in addition to a compound of the present invention, stabilizers, preservatives, excipients, and the like.
  • the preferred lipids are the phospholipids and the phosphatidyl cholines (lecithins), both natural and synthetic. Methods to form liposomes are known in the art. See, for example, Prescott, Ed., Methods in Cell Biology, Volume XIV, Academic Press, New York, N.Y. (1976), p. 33 et seq.
  • Total daily dose of the compositions of the invention to be administered to a human or other mammal host in single or divided doses may be in amounts, for example, from 0.0001 to 300 mg/kg body weight daily and more usually 1 to 300 mg/kg body weight.
  • the dose, from 0.0001 to 300 mg/kg body, may be given twice a day.
  • AIBN a,a'-Azoisobyronitrile
  • BINAP 2,2'-Bis(diphenylphosphino)-l,r-binaphthyl
  • BOP Bis(2-oxo-3-oxazolidinyl)phosphine
  • CAN Ceric ammonium nitrate cataCXium
  • Pd G3 mesylate [(di(l-adamantyl)-n-butylphosphine)-2-
  • CPhos 2-Dicyclohexylphosphino-2',6'-bis(jV,7V-dimethylamino)biphenyl
  • DIBAL Diisobutylaluminium hydride
  • DIPEA Diisopropylethylamine
  • DMPU l,3-Dimethyl-3,4,5,6-tetrahydro-2(lH)-pirimidone
  • EDC l-Ethyl-3-(3-dimethylaminopropy)carbodiimide
  • EDCI l-Ethyl-3-(3-dimethylaminopropy)carbodiimide hydrochloride
  • HMDS Hexamethyldisilazane
  • HMPA Hexamethylphosphoramide
  • HOAt 7-Aza-l-hydroxybenzotriazole
  • HOBt 1 -Hydroxybenzotriazole
  • KHMDS Potassium bis(trimethylsilyl)amide
  • LAH Lithium aluminium hydride
  • LHMDS Lithium bis(trimethylsilyl)amide
  • MCPBA meta-chloroperoxybenzoic acid
  • NBS N-Bromosuccinimide
  • NCS N-Chlorosuccinimide
  • NIS N-Iodosuccinimide
  • NMM N-Methylmorpholine
  • NMO N-Methylmorpholine-N-oxide
  • Ns p-Nitrophenyl sulphonyl
  • Pd(dppf)Q2 [l,l’-bis(diphenylphosphino)ferrocene]dichloropalladium
  • Pd(PPh3)4 tetrakis(triphenylphosphine)palladium
  • PCC Pyridinium chlorochromate
  • PPTS Pyridinium p-toluensulphonate
  • n-Pr n-Propyl
  • Red-Al® Sodium bis(2-methoxyethoxy)aluminium hydride
  • RuPhos 2-Dicyclohexylphosphino-2',6'-diisopropoxybiphenyl
  • TBDPS tert-Butyldiphenylsilyl
  • TBHP tert-Butylhydroperoxyde
  • TBS tert-Butyl di methyl silyl
  • Tf2O Trifluoromethanesulfonyl anhydride
  • TfOH Trifluoromethanesulfonic acid
  • TIPS Triisopropylsilyl
  • TMEDA N,N,N',N'-Tetramethylethylendiamine
  • TPAP Tetra-n-propylammonium perruthenate
  • Tr Trityl, triphenylmethyl
  • Trt Trityl, triphenylmethyl
  • Ts p-Toluenesulphonyl
  • p-TsOH p-Toluenesulphonic acid
  • UV ultraviolet
  • Scheme 1 illustrates one procedure for preparing the compounds of disclosure using metal-catalyzed reaction to prepare the substituted quinazoline.
  • Displacement of 4-chloro group of 1,3 -di substituted quinazoline with a protected piperazine or amine provides 2-chloro-4-amine- substituted quinazoline intermediate.
  • the second chloro group was displaced with an appropriate alcohol to fetch an ether substituted quinazoline intermediate.
  • This intermediate could be utilized in two different ways to prepare the final target compounds.
  • the first method is to install bromine atom at C7 position after deprotonation with strong base such as BuLi or LDA.
  • Pd-catalyzed Suzuki reaction will be applied to couple a suitable aryl boronic acid or ester followed by the deprotection of all the protecting group to yield the final product.
  • the second method is to apply a zincate to deprotonate C7 to form an aromatic zinc reagent, then couple with an appropriate aryl halide to form C7-aryl substituted quinazolines. Final deprotection yields the desired target compounds.
  • Scheme 2 illustrates the other procedure for preparing the compounds of disclosure by using C7 brominated amino benzoic acid as starting material.
  • 2-Amino benzoic acid reacts with chlorosulfonyl isocyanate and provides 2-thiol-3 -hydroxyl quinazoline. After methylation of thiol, 4-hydroxyl group was transformed to 4-chloride. Displacement of 4-chloro group with a protected piperazine or amine provides 4-amine-2 -thiol quinazoline intermediate. Then some functional group transformation can be carried out at C6 and more reactive C5-fluoro was displaced with an appropriate alcohol or other nucleophile. This intermediate was coupled to aryl boronic acid or ester by Pd-catalyzed Suzuki reaction followed by the deprotection of all the protecting group to yield the final target compounds.
  • Step 1 Synthesis of l,5-difluoro-2-methyl-4-nitrobenzene
  • Step 2 Synthesis of 2,4-difluoro-5-methylaniline [00234] A mixture of l,5-difluoro-2-methyl-4-nitrobenzene (5.0 g, 28.9 mmol) and Pd/C (10%, 1.7 g) in MeOH (50 mL) was hydrogenated with a balloon of hydrogen at room temperature for 3 h. HPLC showed the reaction was completed. The mixture was filtered and concentrated to give crude product, 2,4-difluoro-5-methylaniline (3.1 g, 75.6%) as a gray solid, which was used for next step without further purification.
  • Step 7 Synthesis of 2,4-dichloro-6,8-difluoro-5-methylquinazoline [00239] A solution of 6,8-difluoro-5-methylquinazoline-2,4-diol (456 mg, 2.2 mmol, 1.0 eq) in POCL (4.5 mL) was added DIEA (1.1 g, 8.6 mmol, 4.0 eq) and stirred at 90 °C for 3 h under nitrogen atmosphere.
  • DIEA 1.1 g, 8.6 mmol, 4.0 eq
  • Step 1 Synthesis of tert-butyl (3-bromo-2-fluoro-5-methylphenyl) carbamate
  • Step 1 Synthesis of l,5-difluoro-2-methoxy-4-nitrobenzene
  • Step 7 Synthesis of 7-bromo-5,8-difluoro-6-iodo-2-(methylthio)quinazolin-4-ol
  • a solution of 7-bromo-5,8-difluoro-6-iodo-2-mercaptoquinazolin-4-ol 5.5 g, 13.15 mmol, 1.0 eq
  • 1% NaOH 80 mL
  • Mel 1.87 g, 13.15 mmol, 1.0 eq
  • MeOH 60 mL
  • the reaction mixture was stirred at room temperature for 1 h.
  • the aqueous phase was acidified with 2 N HC1.
  • Step 8 Synthesis of 7-bromo-4-chloro-5,8-difluoro-6-iodo-2-(methylthio)quinazoline
  • Step 1 Synthesis of l-(benzyloxy)-2,4-difluoro-5-nitrobenzene
  • Step 3 Synthesis of 3-bromo-l,4-difluoro-2-methoxy-5-nitrobenzene [00277] To a solution of 2-bromo-3,6-difluoro-4-nitrophenol (4.5 g, 17.72 mmol, 1.0 eq) in Acetone (45 mL) was added NaHCCh (4.5 g, 53.15 mmol, 3 eq) and Me2SO4 (4.5 g, 35.44 mmol, 2 eq). The reaction mixture was stirred at 50 °C for 15 h. The reaction was quenched with H2O (50 mL) and extracted with EtOAc (50 mL x 3).
  • Step 6 Synthesis of methyl 2-amino-4-bromo-3,6-difluoro-5-methoxybenzoate
  • Step 8 Synthesis of 7-bromo-2,4-dichloro-5,8-difluoro-6-methoxyquinazoline
  • Step 1 Synthesis of l-(tert-butoxy)-3-chloro-7-fluoroisoquinoline
  • Step 2 Synthesis of l-(tert-butoxy)-7-fluoro-N, N-bis(4-methoxybenzyl)isoquinolin-3-amine
  • Step 4 Synthesis of 3-(bis(4-methoxybenzyl)amino)-7-fluoro-8-((triisopropylsilyl) ethynyl)isoquinolin-l-ol
  • Step 1 Synthesis of tert-butyl 2-(isopropylcarbamoyl)-7,8-dihydro-4H-pyrazolo[l,5- a][l,4]diazepine-5(6H)-carboxylate
  • Step 2 Synthesis of N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2- carboxamide
  • Step 1 Synthesis of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diol
  • Step 2 Synthesis of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diyl bis(trifluoromethanesulfonate) [00291 ] To a solution of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l ,3-diol (1 .2 g, 3.3 mmol, 1.0 eq) in DCM (20 mL) was added TfzO (3.77 g, 13.3 mmol, 4.0 eq) and DIEA (2.6 g, 20.0 mmol, 6.0 eq) at 0 °C.
  • Step 3 Synthesis of 3-(difluoromethyl)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l- yl trifluoromethanesulfonate
  • Step 1 Synthesis of l-bromo-5-fluoro-3-methyl-2-(trifluoromethyl)benzene
  • Step 4 Synthesis of 4-bromo-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5-(trifluoromethyl)- 1H -indazole
  • Step 3 Synthesis of 2-amino-6-chloro-3,5-difluorobenzoic acid [00299] To a solution of 4-chloro-5,7-difluoroindoline-2, 3-dione (10.0 g, 45.97 mmol, 1 .0 eq) in NaOH (2 mol/L aqueous solution, 400 mL) was added dropwise H2O2 (30 mL, 37% aqueous solution) at 0 °C. The reaction mixture was stirred at room temperature for 15 h.
  • Step 1 Synthesis of tert-butyl l-(methoxymethyl)-3-trityl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
  • Step 2 Synthesis of tert-butyl l-(methoxymethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
  • Step 1 Synthesis of 6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5-
  • Step 2 Synthesis of ((6-(difluoromethoxy)-2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane
  • Step 1 Synthesis of tert-butyl l-methyl-3-trityl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 2 Synthesis of tert-butyl l-methyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 1 Synthesis of tert-butyl 2-(isopropylcarbamoyl)-6,7-dihydropyrazolo[l,5-a]pyrazine-
  • Step 3 Synthesis of 4-bromo-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5-(trifluoromethyl)- lH-indazole-3-carbonitrile
  • Step 1 Synthesis of ethyl (S)-2-(fluoromethylene)-5-oxotetrahydro-lH-pyrrolizine-7a(5H)- carboxylate [00313] To a solution of 2-((fluoromethyl)sulfonyl) pyridine (4.6 g, 26.3 mmol, 1.1 eq) in THF (260 mL) under nitrogen was added KHMDS (31 mL, 30.77 mmol, 1.3 eq) at -78 °C.
  • Step 1 Synthesis of tert-butyl (2S)-2-(hydroxymethyl)-5-methoxypyrrolidine-l-carboxylate
  • Step 2 Synthesis of tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-5- methoxypyrrolidine-l-carboxylate [00316] To a solution of tert-butyl (2S)-2-(hydroxymethyl)-5-methoxypyrrolidine-l - carboxylate (35.0 g, 151.3 mmol, 1.0 eq) in DCM (350 mL) was added Imidazole (15.5 g, 227.0 mmol, 1.5 eq) and TBSC1 (27.4 g, 181.6 mmol, 1.2 eq) in portions at 0 °C. The reaction was stirred at room temperature for 15 h under N2.
  • Step 3 Synthesis of tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-5- cyanopyrrolidine-l-carboxylate
  • Step 4 Synthesis of l-(tert-butyl) 2-methyl (5S)-5-(hydroxymethyl)pyrrolidine-l,2- dicarboxylate [00318] To a solution of tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-5- cyanopyrrolidine-1 -carboxylate (20.0 g, 58.7 mmol, 1.0 eq) in MeOH (200 mL) was added K2CO3 (20.3 g, 146.8 mmol, 2.5 eq). The reaction was stirred at room temperature for 3 h under N2. The reaction mixture was adjusted pH ⁇ 2 with 10% HC1 aqueous solution.
  • Step 5 Synthesis of l-(tert-butyl) 2-methyl (5S)-5-(((tert-butyldiphenylsilyl)oxy)methyl) pyrrolidine -1,2-dicarboxylate
  • Step 6 Synthesis of l-(tert-butyl) 2-methyl (2S,5S)-5-(((tert-butyldiphenylsilyl)oxy)methyl)- 2-(2-(chloromethyl)allyl)pyrrolidine-l,2-dicarboxylate [00320] To a solution of 1 -(tert-butyl) 2-methyl (5S)-5-(((tert- butyldiphenylsilyl)oxy)methyl)pyrrolidine-l,2-dicarboxylate (10.0 g, 20.1 mmol, 1.0 eq) in THF (100 mL) was added HMPA (18.0 g, 100.5 mmol, 5.0 eq) and LDA (2M) (20.1 mL, 40.2 mmol, 2.0 eq) dropwise at -78 °C.
  • Step 7 Synthesis of methyl (5S,7aS)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-2-methylene tetrahydro-lH-pyrrolizine-7a(5H)-carboxylate
  • Step 8 Synthesis of ((5S,7aS)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-2-methylene tetra hydro-lH-pyrrolizin-7a(5H)-yl)methanol
  • the reaction mixture was stirred at 100 °C for 2 h under N2.
  • the reaction mixture was partitioned between EtOAc (40 mL) and H2O (40 mL). The layers were separated. The aqueous layer was extracted with EtOAc (40 mL x 3). The combined organic layers were washed with brine (30 mL), dried over Na2SO 4 and concentrated to a crude.
  • Step 2 Synthesis of N-(6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5-
  • Step 1 Synthesis of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diyl bis(trifluoromethanesulfonate)
  • Step 2 Synthesis of ethyl 2-(6-fluoro-4-(((trifluoromethyl)sulfonyl)oxy)-5- ((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate
  • Step 3 Synthesis of ethyl 2-(6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5- ((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate
  • Step 1 Synthesis of ethyl (S)-2-(difluoromethylene)-5-oxotetrahydro-lH-pyrrolizine-
  • Step 2 Synthesis of (S)-(2-(difluoromethylene)tetrahydro-lH-pyirolizin-7a(5H)- yl)methanol
  • Step 1 Synthesis of tert-butyl 3-(2-chloro-5,6,8-trifluoroquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 2 Synthesis of tert-butyl 3-(5,6,8-trifluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 3 Synthesis of tert-butyl 3-(7-bromo-5,6,8-trifluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane-8- carboxylate
  • Step 4 Synthesis of tert-butyl 3-(5,6,8-trifluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen -1-yl) -2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 5 Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,6,8-trifluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)quinazolin-7-yl)-5-fluoronaphthalen-2- ol
  • Step 2 Synthesis of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8- carboxylate
  • Step 3 Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8- carboxylate
  • Step 4 Synthesis of tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 5 Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-7-yl)-5- fluoronaphthalen-2-ol [00339] A solution of tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (130 mg, 0.17 mmol,
  • the precipitate formed was collected by fdtration, washed with DCM (3 mL). The solid was partitioned between EtOAc (10 mL) and aqueous NaHCCL (5 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3).
  • Step 1 Synthesis of tert-butyl 3-(7-bromo-2-chloro-8-fluoro-6-iodo-5-methylquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 2 Synthesis of tert-butyl 3-(7-bromo-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-iodo-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
  • the reaction mixture was stirred at room temperature for 3 h.
  • the mixture was partitioned between EtOAc (20 mL) and water (5 mL), the layers were separated.
  • the aqueous layer was extracted with EtOAc (20 mL x 3).
  • the combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO 4 and evaporated to dryness.
  • Step 3 Synthesis of tert-butyl 3-(7-bromo-6-cyano-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
  • the reaction mixture was stirred at 100 °C for 12 h.
  • the mixture was partitioned between EtOAc (20 mL) and water (5 mL).
  • the aqueous layer was extracted with EtOAc (20 mL x 3).
  • the combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO 4 and evaporated to dryness.
  • Step 4 Synthesis of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate [00343] To a solution of tert-butyl 3-(7-bromo-6-cyano-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate (40 mg, 0.06 m
  • Step 5 Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)-5-methylquinazoline-6-carbonitrile
  • the crude product was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 40%) to give the desired product, 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8- fluoro-3-hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methylquinazoline-6-carbonitrile(3.8 mg, 46.9%) as a white solid.
  • Step 1 Synthesis of tert-butyl 3-(7-bromo-2,6-dichloro-8-fluoro-5-methyl quinazolin-4-yl)-
  • Step 2 Synthesis of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diaza bicyclo [3.2.1] octane-8-carboxylate
  • Step 3 Synthesis of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)-5- methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 4 Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-7-yl)-5- fluoronaphthalen-2-ol [00348] A solution of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-
  • Step 1 Synthesis of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 2 Synthesis of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8- carboxylate
  • Step 3 Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
  • Step 4 Synthesis of tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 5 Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5- fluoronaphthalen-2-ol
  • the precipitate formed was collected by filtration and washed with DCM.
  • the solid was partitioned between EtOAc (10 mL) and aqueous NaHCCh (5 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3).
  • Example 6 (included in Example 11 and 12)
  • Step 1 Synthesis of tert-butyl 3-(7-bromo-5,8-difluoro-6-iodo-2-(methylthio)quinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 2 Synthesis of tert-butyl 3-(7-bromo-6-cyano-5,8-difluoro-2-(methylthio)quinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 3 Synthesis of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
  • the reaction mixture was stirred at 100 °C for 2 h under nitrogen atmosphere.
  • the mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3).
  • the organic phase was washed with brine (20 mL), dried with JSfeSCL, filtered and concentrated to give residue.
  • Step 4 Synthesis of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(methylsulfonyl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate [00357] To a solution of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3- (m ethoxymethoxy )naphthalen-l-yl)-2-(methylthio)quinazolin-4-yl)-3, 8- diazabicyclo[3.2.1]octane-8-carboxylate (350 mg, 0.53 mmol, 1.0 eq) in DCM (6.00mL) was added m-CPBA (309 mg, 1.34 mmol, 2.5 eq, 75%) at
  • Step 5 Synthesis of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 6 Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)quinazoline-6-carbonitrile
  • Step 2 Synthesis of tert-butyl-3-(7-bromo-8-fluoro-6-iodo-5-methoxy-2-(methylthio) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 3 Synthesis of tert-butyl-3-(7-bromo-6-cyano-8-fluoro-5-methoxy-2-(methylthio) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
  • Step 4 Synthesis of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
  • the reaction mixture was stirred at 100 °C for 2 h under nitrogen atmosphere.
  • the mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3).
  • the organic phase was washed with brine (20 mL), dried with Na2SO 4 , filtered and concentrated to give residue.
  • Step 6 Synthesis of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate
  • Step 7 Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazoline-6-carbonitrile formate (1: 1)
  • Step 1 Synthesis of tert-butyl 3-(6-carbamoyl-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fhiorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3 ,8-diazabicyclo [3.2.1] octane-8-carboxylate
  • Step 2 Synthesis of (R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazoline-6-carboxamide formate (1: 1) and (S)-4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-8-fhioro-7-(8-fhioro-3-hydroxynaphthalen-l-yl)-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline-6- carboxamide formate (1: 1)
  • Step 1 Synthesis of tert-butyl 3-(7-bromo-6-chloro-5,8-difluoro-2-(methylthio)quinazolin-

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Abstract

The invention provides novel quinazoline derivatives, substituted at the C4 position with an unsubstituted or substituted, 3- to 10-membered monocyclic, bicyclic or bridged nitrogen heterocyclic ring moiety, that are shown to be potent and selective inhibitors of KRas, in particular KRas (G12D) and pharmaceutical compositions thereof and methods for treating diseases and disorders associated with or related to KRas activities, such as various types of cancer.

Description

QUINAZOLINE DERIVATIVES, COMPOSITIONS AND METHODS THEREOF
Priority Claims and Related Applications
[0001] This application claims the benefit of priority to U.S. Provisional Application No. 63/352,853, filed June 16, 2022, the entire content of which is incorporated herein by reference for all purposes.
Technical Fields of the Invention
[0002] The invention generally relates to novel compounds and therapeutic uses thereof. More particularly, the invention provides novel quinazoline derivatives that are shown to be potent and selective inhibitors of KRas, in particular KRas (G12D). The invention also provides pharmaceutical compositions comprising compounds of the invention and methods for treating diseases and disorders associated with or related to KRas activities, such as various types of cancer.
Background of the Invention
[0003] KRAS (Kirsten rat sarcoma virus) is a gene that provides instructions for making a protein called KRas, a part of the RAS/MAPK pathway. The protein relays signal from outside the cell to the cell's nucleus instructing the cell to grow and divide (proliferate) or to mature and take on specialized functions (differentiate). KRas serves as a molecular switch cycling between inactive (GDP-bound) and active (GTP -bound) states to transduce upstream cellular signals received from multiple tyrosine kinases to downstream effectors to regulate a wide variety of processes, such as cellular proliferation. The role of activated KRas in malignancy was first observed over thirty years ago. (Santos et al. 1984 Science 223:661-664; Alamgeer et al. 2013 Current Opin Pharmcol.1394-401)
[0004] KRas mutation occurs in nearly 30% of human cancers. For example, mutations of KRas are observed in pancreatic ductal adenocarcinomas, colon and rectal carcinomas, and nonsmall cell lung carcinomas. Mutations often occur in the glycine residue of KRas at position 12 with KRas(Gl 2D) being the most prevalent and oncogenic variant. KRas(Gl 2D) mutation has been shown to be present in about 25% of all pancreatic ductal adenocarcinoma patients, about 13% of all colorectal carcinoma patients, about 10% of all rectal carcinoma patients, about 4% of all non-small cell lung carcinoma patients and about 1.7% of all small cell lung carcinoma patients (The AACR Project GENIE Consortium, 2017 Cancer Discovery 7(8): 818-831, Dataset Version 4).
[0005] Despite extensive efforts over the past thirty years to develop inhibitors of KRas to treat cancer, no KRas(G12D) inhibitor has been clinically demonstrated with sufficient safety and/or efficacy to warrant regulatory approval. (McCormick 2015 Clin Cancer Res. 21 (8): 1797- 1801; Sun et al. 2012 Agnew Chem Int Ed Engl . 51 (25):6140-6143 ; Ostrem et al. 2Q13 Nature 503:548-551; Fell et al. 2018 ACS Med. Chem. Lett. 9: 1230-1234; Cox, et al. 2014 Nature Rev Drug Discov. 13 (11), 828-51; Patricelli et al. 2016 Cancer Di scov. 6(3), 316-29; Hunter et al. 2015 Mol Cancer Res. 13(9), 1325-35.)
[0006] There remains an urgent need for potent and selective KRas inhibitors, in particular, inhibitors of KRas mutants, especially KRas(G12D), that are safe and effective in treating diseases and conditions associated with aberrant expression of KRAS, such as various types of cancer (e.g., ductal cancer, colorectal cancer, rectal cancer, cell lung cancer).
Summary of the Invention
[0007] The invention provides novel quinazoline derivatives as KRas inhibitors, in particular KRas (G12D) inhibitors, which have been shown to exhibit favorable potency and selectivity profiles over known KRas inhibitors. These novel compounds selectively target, bind to, inhibit and/or modulates the activity of KRas. The compound is also orally available with pharmacokinetic profiles suitable for development into an orally administered therapeutic agent for treating various diseases and disorders associated with or related to KRas activities, such as various types of cancer.
[0008] In one aspect, the invention generally relates to a compound having the structural Formula (I):
Figure imgf000004_0001
I or a pharmaceutically acceptable form or an isotope derivative thereof, wherein
R1 is XR11 or NR12R13, wherein X is O, S or absent, R11 is (CH2)iR14, and z is an integer selected from 0-6 (e.g., 0, 1, 2, 3, 4, 5 or 6), wherein (CHi); is optionally substituted;
R2 is an unsubstituted or substituted 6- to 10-membered (e.g., 6-, 7-, 8-, 9- or 10- membered) unsaturated monocyclic or bicyclic ring, comprising 0-5 e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S;
R3 is L-R3 , wherein
L is a single bond or NR(CH2)k, wherein k is an integer selected from 0-3 (e.g., 0, 1, 2 or 3); and
R3 is an unsubstituted or substituted, 3- to 10-membered (e.g., 3-, 4-, 5-, 6-, 7-, 8- , 9- or 10-membered) saturated or unsaturated monocyclic, bicyclic or bridged ring moiety that comprises 0-5 (e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S; each of R4 and R5 is independently selected from the group consisting of H, halogen, CN, OH, unsubstituted or substituted Ci-4 alkyl, unsubstituted or substituted Ci-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R”, C(O)OR, unsubstituted or substituted 3- to 8- membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) carbocycle, and unsubstituted or substituted 3- to 8-membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) heterocycle, provided that (a) R4 and R5 are not H at the same time, and (b) where R4 is H R5 is an unsubstituted or substituted 3- to 8- membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) carbocycle, or unsubstituted or substituted 3- to 8-membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) heterocycle; each of R12 and R13 is independently selected from the group consisting of H, unsubstituted or substituted C1-6 alkyl, unsubstituted or substituted carbocyclic ring, and unsubstituted or substituted heterocyclic ring; or R12 and R13, together with the N atom they are bound to, are joined to form an unsubstituted or substituted heterocyclic or heteroaryl ring; R14 is selected from the group consisting of H, halogen, CN, OH, NO2, unsubstituted or substituted Ci-6 alkyl, NRR’, C(O)NRR’, NRC(O)R”, SO2NRR’, NR-SO2R’, NRC(O)NRR’, C(O)CH2-aryl, C(O)OCH2-aryl, NRC(O)OCH2-phenyl, C(O)R”, OC(O)R”, C(O)OR, unsubstituted or substituted 3- to 6-membered e.g., 3-, 4-, 5-, 6-membered) carbocyclic ring, unsubstituted or substituted 4- to 6-membered e.g., 4-, 5-, 6-membered) heterocyclic ring; unsubstituted or substituted aryl, and unsubstituted or substituted heteroaryl; and each of R and R’ is independently selected from H, unsubstituted or substituted C1-4 alkyl, or unsubstituted or substituted 4- to 6-membered (e.g., 4-, 5- or 6-membered) carbocyclic ring, or where R and R’ are attached to the same N atom, together form an unsubstituted or substituted 4- to 6-membered (e.g., 4-, 5- or 6-membered) heterocyclic ring; and
R” is H, unsubstituted or substituted C1-4 alkoxy, unsubstituted or substituted C1.4 alkyl, or unsubstituted or substituted 4- to 6-membered (e.g., 4-, 5- or 6-membered) carbocyclic ring. [0009] In another aspect, the invention generally relates to a pharmaceutical composition comprising a compound disclosed herein and a pharmaceutically acceptable excipient, carrier, or diluent.
[0010] In yet another aspect, the invention generally relates to a unit dosage form comprising a pharmaceutical composition disclosed herein.
[0011] In yet another aspect, the invention generally relates to a method for inhibiting cell proliferation in vitro or in vivo, comprising contacting a cell with an effective amount of a compound disclosed herein.
[0012] In yet another aspect, the invention generally relates to a method for inhibiting KRas(G12D) activity in a cell, comprising contacting the cell with a compound disclosed herein. [0013] In yet another aspect, the invention generally relates to a method for treating a disease or disorder mediated by a Ras mutant protein, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
[0014] In yet another aspect, the invention generally relates to a method for treating or reducing cancer, or a related disease or disorder, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
[0015] In yet another aspect, the invention generally relates to a method for treating or reducing cancer, or a related disease or disorder, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein. [0016] In yet another aspect, the invention generally relates to use of a compound disclosed herein, and a pharmaceutically acceptable excipient, carrier, or diluent, in preparation of a medicament for treating a disease or disorder.
Definitions
[0017] Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. General principles of organic chemistry, as well as specific functional moieties and reactivity, are described in “Organic Chemistry”, Thomas Sorrell, University Science Books, Sausalito: 2006.
[0018] As used herein, “at least” a specific value is understood to be that value and all values greater than that value.
[0019] The term “comprising”, when used to define compositions and methods, is intended to mean that the compositions and methods include the recited elements, but do not exclude other elements. The term “consisting essentially of’, when used to define compositions and methods, shall mean that the compositions and methods include the recited elements and exclude other elements of any essential significance to the compositions and methods. For example, “consisting essentially of’ refers to administration of the pharmacologically active agents expressly recited and excludes pharmacologically active agents not expressly recited. The term consisting essentially of does not exclude pharmacologically inactive or inert agents, e.g., pharmaceutically acceptable excipients, carriers or diluents. The term “consisting of’, when used to define compositions and methods, shall mean excluding trace elements of other ingredients and substantial method steps. Embodiments defined by each of these transition terms are within the scope of this invention.
[0020] Unless specifically stated or obvious from context, as used herein, the term “about” is understood as within a range of normal tolerance in the art, for example within 2 standard deviations of the mean. About can be understood as within 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1%, 0.5%, 0.1%, 0.05%, or 0.01% of the stated value. Unless otherwise clear from context, all numerical values provided herein can be modified by the term about.
[0021] As used herein, the terms “administration” of or “administering” a disclosed compound encompasses the delivery to a subject of a compound as described herein, or a prodrug or other pharmaceutically acceptable form thereof, using any suitable formulation or route of administration, as discussed herein.
[0022] As used herein, the term “co-administer” refers to the presence of two pharmacological agents in a subject’s body (e.g., in the blood) at the same time. The two pharmacological agents can be administered concurrently or sequentially.
[0023] The terms “disease”, “disorder” and “condition” are used interchangeably unless indicated otherwise.
[0024] As used herein, the terms "effective amount" or "therapeutically effective amount" refer to that amount of a compound or pharmaceutical composition described herein that is sufficient to achieve the intended application including, but not limited to, disease treatment, as illustrated below.
[0025] In some embodiments, the amount is that is sufficient to negatively modulate or inhibit the activity of KRas (G12D). In some embodiments, the amount is that effective for reduction or amelioration of a symptom to stop or reversion of progression of a disease or disorder such as cancer. In some embodiments, the amount is that effective for detectable killing or inhibition of the growth or spread of cancer cells; the size or number of tumors; or other measure of the level, stage, progression or severity of the cancer.
[0026] The therapeutically effective amount can vary depending upon the intended application, or the subject and disease condition being treated, e.g., the desired biological endpoint, the pharmacokinetics of the compound, the disease being treated, the mode of administration, and the weight and age of the patient, which can readily be determined by one of ordinary skill in the art. Such amount may be administered as a single dosage or according to a regimen. The term also applies to a dose that will induce a particular response in target cells, e.g., reduction of cell migration. The specific dose will vary depending on, for example, the particular compounds chosen, the species of subject and their age/existing health conditions or risk for health conditions, the dosing regimen to be followed, the severity of the disease, whether it is administered in combination with other agents, timing of administration, the tissue to which it is administered, and the physical delivery system in which it is carried.
[0027] As used herein, the terms “KRas(G12D)” or “KRas G12D” are used interchangeably and refers to a mutant form of a mammalian KRas protein that contains an amino acid substitution of an aspartic acid for a glycine at amino acid position 12. The assignment of amino acid codon and residue positions for human KRas is based on the amino acid sequence identified by UniProtKB/Swiss-Prot P01116: Variantp.Glyl2Asp.
[0028] As used herein, an “inhibitor” of “KRas(G12D)” or “KRas G12D” refers to a compound of the invention capable of negatively modulating or inhibiting all or a portion of the enzymatic activity of KRas G12D.
[0029] As used herein, a “KRas G12D-associated” disease or disorder refers to diseases or disorders associated with or mediated by or having a KRas G12D mutation. Examples of KRas G12D-associated diseases or disorders include various KRas G12D-associated cancer types. [0030] As used herein, the term “contacting” refers to the bringing together of indicated moieties in vitro or in vivo. For example, “contacting” a KRas G12D with a compound disclosed herein includes the administration of the compound to a subject having KRas G12D, as well as, for example, introducing the compound into a sample containing a cellular or purified preparation containing the KRas G12D. In some embodiments, a cell in which inhibition of KRas G12D activity is desired is contacted with an effective amount of a compound disclosed herein or pharmaceutically acceptable form thereof to negatively modulate the activity of KRas G12D. By negatively modulating the activity of KRas G12D, the methods disclosed herein are designed to inhibit undesired cellular proliferation resulting from enhanced KRas G12D activity within the cell. The cells may be contacted in a single dose or multiple doses in accordance with a particular treatment regimen to achieve the desired negative modulation of KRas G12D. The ability of compounds to bind KRas G12D may be monitored in vitro using methods known in the art. The inhibitory activity of exemplary compounds in cells may be monitored, for example, by measuring the inhibition of KRas G12D activity using methods known in the art.
[0031 ] As used herein, the terms “unsubstituted or substituted” and “optionally substituted” are used interchangeably and refer to where a given chemical moiety (e.g., an alkyl group) can (but is not required to) be bonded other substituents (e.g., heteroatoms). For instance, an alkyl group that is optionally substituted can be a fully saturated alkyl chain (e.g., a pure hydrocarbon). Alternatively, the same optionally substituted alkyl group can have substituents different from hydrogen. For instance, it can, at any point along the chain be bounded to a halogen atom, a hydroxyl group, or any other substituent described herein. Thus, the term “optionally substituted” means that a given chemical moiety has the potential to contain other functional groups, but does not necessarily have any further functional groups. Suitable substituents used in the optional substitution of the described groups include, without limitation, halogen, oxo, CN, - COOH, -CH2CN, -O-C1-C6 alkyl, C1-C6 alkyl, -OC1-C6 alkenyl, -OC1-C6 alkynyl, -C1-C6 alkenyl, -C1-C6 alkynyl, -OH, -OP(O)(OH)2, -OC(O)C1-C6 alkyl, -C(O)C1-C6 alkyl, -OC(O)OCi- C6 alkyl, NH2, NH(CI-C6 alkyl), N(CI-C6 alkyl)2, -NHC(O)CI-C6 alkyl, -C(O)NHCI-C6 alkyl, - S(O)2-C1-C6 alkyl, -S(O)NHCI-C6 alkyl, and S(O)N(CI-C6 alkyl)2.
[0032] As used herein, a “pharmaceutically acceptable form” of a disclosed compound includes, but is not limited to, pharmaceutically acceptable salts, esters, hydrates, solvates, isomers, prodrugs, and isotopically labeled derivatives of disclosed compounds. In one embodiment, a "pharmaceutically acceptable form" includes, but is not limited to, pharmaceutically acceptable salts, esters, isomers, prodrugs and isotopically labeled derivatives of disclosed compounds. In some embodiments, a "pharmaceutically acceptable form" includes, but is not limited to, pharmaceutically acceptable salts, esters, stereoisomers, prodrugs and isotopically labeled derivatives of disclosed compounds.
[0033] In certain embodiments, the pharmaceutically acceptable form is a pharmaceutically acceptable salt. As used herein, the term "pharmaceutically acceptable salt" refers to those salts which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of subjects without undue toxicity, irritation, allergic response and the like, and are commensurate with a reasonable benefit/risk ratio. Pharmaceutically acceptable salts are well known in the art. For example, Berge et al. describes pharmaceutically acceptable salts in detail in J. Pharmaceutical Sciences (1977) 66: 1-19 Pharmaceutically acceptable salts of the compounds provided herein include those derived from suitable inorganic and organic acids and bases. Examples of pharmaceutically acceptable, nontoxic acid addition salts are salts of an amino group formed with inorganic acids such as hydrochloric acid, hydrobromic acid, phosphoric acid, sulfuric acid and perchloric acid or with organic acids such as acetic acid, oxalic acid, maleic acid, tartaric acid, citric acid, succinic acid or malonic acid or by using other methods used in the art such as ion exchange. Other pharmaceutically acceptable salts include adipate, alginate, ascorbate, aspartate, benzenesulfonate, besylate, benzoate, bisulfate, borate, butyrate, camphorate, camphorsulfonate, citrate, cyclopentanepropionate, digluconate, dodecylsulfate, ethanesulfonate, formate, fumarate, glucoheptonate, glycerophosphate, gluconate, hemisulfate, heptanoate, hexanoate, hydroiodide, 2-hydroxy-ethanesulfonate, lactobionate, lactate, laurate, lauryl sulfate, malate, maleate, malonate, methanesulfonate, 2- naphthalenesulfonate, nicotinate, nitrate, oleate, oxalate, palmitate, pamoate, pectinate, persulfate, 3 -phenylpropionate, phosphate, picrate, pivalate, propionate, stearate, succinate, sulfate, tartrate, thiocyanate, p-toluenesulfonate, undecanoate, valerate salts, and the like. In some embodiments, organic acids from which salts can be derived include, for example, acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, lactic acid, trifluoracetic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid, and the like.
[0034] The salts can be prepared in situ during the isolation and purification of the disclosed compounds, or separately, such as by reacting the free base or free acid of a parent compound with a suitable base or acid, respectively. Pharmaceutically acceptable salts derived from appropriate bases include alkali metal, alkaline earth metal, ammonium and N+(Ci-4alkyl)4 salts. Representative alkali or alkaline earth metal salts include sodium, lithium, potassium, calcium, magnesium, iron, zinc, copper, manganese, aluminum, and the like. Further pharmaceutically acceptable salts include, when appropriate, nontoxic ammonium, quaternary ammonium, and amine cations formed using counterions such as halide, hydroxide, carboxylate, sulfate, phosphate, nitrate, lower alkyl sulfonate and aryl sulfonate. Organic bases from which salts can be derived include, for example, primary, secondary, and tertiary amines, substituted amines, including naturally occurring substituted amines, cyclic amines, basic ion exchange resins, and the like, such as isopropyl amine, tri methyl amine, diethylamine, tri ethyl amine, tri propyl amine, and ethanolamine. In some embodiments, the pharmaceutically acceptable base addition salt can be chosen from ammonium, potassium, sodium, calcium, and magnesium salts.
[0035] In certain embodiments, the pharmaceutically acceptable form is a pharmaceutically acceptable ester. As used herein, the term "pharmaceutically acceptable ester" refers to esters that hydrolyze in vivo and include those that break down readily in the human body to leave the parent compound or a salt thereof. Such esters can act as a prodrug as defined herein. Pharmaceutically acceptable esters include, but are not limited to, alkyl, alkenyl, alkynyl, aryl, aralkyl, and cycloalkyl esters of acidic groups, including, but not limited to, carboxylic acids, phosphoric acids, phosphinic acids, sulfinic acids, sulfonic acids and boronic acids. Examples of esters include formates, acetates, propionates, butyrates, acrylates and ethyl succinates. The esters can be formed with a hydroxy or carboxylic acid group of the parent compound. [0036] In certain embodiments, the pharmaceutically acceptable form is a “solvate” (e.g., a hydrate). As used herein, the term “solvate” refers to compounds that further include a stoichiometric or non-stoichiometric amount of solvent bound by non-covalent intermolecular forces. The solvate can be of a disclosed compound or a pharmaceutically acceptable salt thereof. Where the solvent is water, the solvate is a "hydrate". Pharmaceutically acceptable solvates and hydrates are complexes that, for example, can include 1 to about 100, or 1 to about 10, or 1 to about 2, about 3 or about 4, solvent or water molecules. It will be understood that the term "compound" as used herein encompasses the compound and solvates of the compound, as well as mixtures thereof.
[0037] In certain embodiments, the pharmaceutically acceptable form is a prodrug. As used herein, the term “prodrug” (or “pro-drug”) refers to compounds that are transformed in vivo to yield a disclosed compound or a pharmaceutically acceptable form of the compound. A prodrug can be inactive when administered to a subject, but is converted in vivo to an active compound, for example, by hydrolysis (e.g, hydrolysis in blood). In certain cases, a prodrug has improved physical and/or delivery properties over the parent compound. Prodrugs can increase the bioavailability of the compound when administered to a subject (e.g., by permitting enhanced absorption into the blood following oral administration) or which enhance delivery to a biological compartment of interest (e.g., the brain or lymphatic system) relative to the parent compound. Exemplary prodrugs include derivatives of a disclosed compound with enhanced aqueous solubility or active transport through the gut membrane, relative to the parent compound.
[0038] The prodrug compound often offers advantages of solubility, tissue compatibility or delayed release in a mammalian organism (see, e.g., Bundgard, H., Design of Prodrugs (1985), pp. 7- 9, 21-24 (Elsevier, Amsterdam). A discussion of prodrugs is provided in Higuchi, T., et al., "Pro-drugs as Novel Delivery Systems," A.C.S. Symposium Series, Vol. 14, and in Bioreversible Carriers in Drug Design, ed. Edward B. Roche, American Pharmaceutical Association and Pergamon Press, 1987, both of which are incorporated in full by reference herein. Exemplary advantages of a prodrug can include, but are not limited to, its physical properties, such as enhanced water solubility for parenteral administration at physiological pH compared to the parent compound, or it can enhance absorption from the digestive tract, or it can enhance drug stability for long-term storage [0039] As used herein, the term “pharmaceutically acceptable excipient, carrier, or diluent” refers to a pharmaceutically acceptable material, composition or vehicle, such as a liquid or solid filler, diluent, excipient, solvent or encapsulating material, involved in carrying or transporting the subject pharmaceutical agent from one organ, or portion of the body, to another organ, or portion of the body. Each carrier must be "acceptable" in the sense of being compatible with the other ingredients of the formulation and not injurious to the patient. Some examples of materials which can serve as pharmaceutically-acceptable carriers include: sugars, such as lactose, glucose and sucrose; starches, such as corn starch and potato starch; cellulose, and its derivatives, such as sodium carboxymethyl cellulose, ethyl cellulose and cellulose acetate; powdered tragacanth; malt; gelatin; talc; excipients, such as cocoa butter and suppository waxes; oils, such as peanut oil, cottonseed oil, safflower oil, sesame oil, olive oil, corn oil and soybean oil; glycols, such as propylene glycol; polyols, such as glycerin, sorbitol, mannitol and polyethylene glycol; esters, such as ethyl oleate and ethyl laurate; agar; buffering agents, such as magnesium hydroxide and aluminum hydroxide; alginic acid; pyrogen-free water; isotonic saline; Ringer's solution; ethyl alcohol; phosphate buffer solutions; and other non-toxic compatible substances employed in pharmaceutical formulations. Wetting agents, emulsifiers and lubricants, such as sodium lauryl sulfate, magnesium stearate, and polyethylene oxide-polypropylene oxide copolymer as well as coloring agents, release agents, coating agents, sweetening, flavoring and perfuming agents, preservatives and antioxidants can also be present in the compositions.
[0040] As used herein, the term “subject” refers to any animal (<?. ., a mammal), including, but not limited to humans, non-human primates, rodents, and the like, which is to be the recipient of a particular treatment. Typically, the terms “subject” and “patient” are used interchangeably herein in reference to a human subject.
[0041] In some embodiments, the subject has experienced and/or exhibited at least one symptom of the disease or disorder to be treated with a compound disclosed herein and/or according to a herein disclosed method. In some embodiments, the subject has been identified or diagnosed as having a cancer having a KRas G12D mutation. In some embodiments, the subject has a cancer that is positive for a KRas G12D mutation. In some embodiments, the subject is suspected of having a KRas G12D gene-associated cancer.
[0042] In some embodiments of any of the methods or uses described herein, an assay is used to determine whether the subject has KRas G12D mutation using a sample (e.g., a biological sample or a biopsy sample (e , a paraffin-embedded biopsy sample) from a subject Various techniques may be employed, for example, next generation sequencing, immunohistochemistry, fluorescence microscopy, break apart FISH analysis, Southern blotting, Western blotting, FACS analysis, Northern blotting, and PCR-based amplification (e.g., RT-PCR and quantitative real-time RT-PCR).
[0043] As used herein, the terms “treatment” or “treating” a disease or disorder refers to a method of reducing, delaying or ameliorating such a condition before or after it has occurred. Treatment may be directed at one or more effects or symptoms of a disease and/or the underlying pathology. Treatment is aimed to obtain beneficial or desired results including, but not limited to, therapeutic benefit and/or a prophylactic benefit. By therapeutic benefit is meant eradication or amelioration of the underlying disorder being treated. Also, a therapeutic benefit is achieved with the eradication or amelioration of one or more of the physiological symptoms associated with the underlying disorder such that an improvement is observed in the patient, notwithstanding that the patient can still be afflicted with the underlying disorder. For prophylactic benefit, the pharmaceutical compounds and/or compositions can be administered to a patient at risk of developing a particular disease, or to a patient reporting one or more of the physiological symptoms of a disease, even though a diagnosis of this disease may not have been made. The treatment can be any reduction and can be, but is not limited to, the complete ablation of the disease or the symptoms of the disease. As compared with an equivalent untreated control, such reduction or degree of prevention is at least 5%, 10%, 20%, 40%, 50%, 60%, 80%, 90%, 95%, or 100% as measured by any standard technique.
[0044] As used herein, the term "therapeutic effect" refers to a therapeutic benefit and/or a prophylactic benefit as described herein. A prophylactic effect includes delaying or eliminating the appearance of a disease or condition, delaying or eliminating the onset of symptoms of a disease or condition, slowing, halting, or reversing the progression of a disease or condition, or any combination thereof.
[0045] Compounds of the present invention are, subsequent to their preparation, preferably isolated and purified to obtain a composition containing an amount by weight equal to or greater than 95% (“substantially pure”), which is then used or formulated as described herein. In certain embodiments, the compounds of the present invention are more than 99% pure. [0046] Solvates and polymorphs of the compounds of the invention are also contemplated herein. Solvates of the compounds of the present invention include, for example, hydrates.
[0047] As used herein, the term an “isolated” or “substantially isolated” molecule (such as a polypeptide or polynucleotide) is one that has been manipulated to exist in a higher concentration than in nature or has been removed from its native environment. For example, a subject antibody is isolated, purified, substantially isolated, or substantially purified when at least 10%, or 20%, or 40%, or 50%, or 70%, or 90% of non-subject-antibody materials with which it is associated in nature have been removed. For example, a polynucleotide or a polypeptide naturally present in a living animal is not "isolated," but the same polynucleotide or polypeptide separated from the coexisting materials of its natural state is "isolated." Further, recombinant DNA molecules contained in a vector are considered isolated for the purposes of the present invention. Isolated RNA molecules include in vivo or in vitro RNA replication products of DNA and RNA molecules. Isolated nucleic acid molecules further include synthetically produced molecules.
Additionally, vector molecules contained in recombinant host cells are also isolated. Thus, not all “isolated” molecules need be “purified.”
[0048] As used herein, the term “purified” when used in reference to a molecule, it means that the concentration of the molecule being purified has been increased relative to molecules associated with it in its natural environment, or environment in which it was produced, found or synthesized. Naturally associated molecules include proteins, nucleic acids, lipids and sugars but generally do not include water, buffers, and reagents added to maintain the integrity or facilitate the purification of the molecule being purified. According to this definition, a substance may be 5% or more, 10% or more, 20% or more, 30% or more, 40% or more, 50% or more, 60% or more, 70% or more, 80% or more, 90% or more, 95% or more, 98% or more, 99% or more, or 100% pure when considered relative to its contaminants.
[0049] Definitions of specific functional groups and chemical terms are described in more detail below. When a range of values is listed, it is intended to encompass each value and subrange within the range. For example, “Ci-4 alkyl” is intended to encompass, Ci, C2, C3, C4, C1-3, C1-2, C2-4, C3-4 and C2-3 alkyl groups.
[0050] As used herein, the term “alkyl” refers to a straight or branched hydrocarbon chain radical consisting solely of carbon and hydrogen atoms, containing no unsaturation, having from one to ten carbon atoms (e. ., C1-10 alkyl). Whenever it appears herein, a numerical range such as “1 to 10” refers to each integer in the given range; e.g., “1 to 10 carbon atoms” means that the alkyl group can consist of 1 carbon atom, 2 carbon atoms, 3 carbon atoms, etc., up to and including 10 carbon atoms, although the present definition also covers the occurrence of the term "alkyl" where no numerical range is designated. In some embodiments, “alkyl” can be a Ci-6 alkyl group. In some embodiments, alkyl groups have 1 to 10, 1 to 8, 1 to 6, or 1 to 3 carbon atoms. Representative saturated straight chain alkyls include, but are not limited to, -methyl, - ethyl, -n-propyl, -n-butyl, -n-pentyl, and -n-hexyl; while saturated branched alkyls include, but are not limited to, -isopropyl, -sec-butyl, -isobutyl, -tert-butyl, -isopentyl, 2-methylbutyl, 3- methylbutyl, 2-m ethylpentyl, 3 -methylpentyl, 4-m ethylpentyl, 2-methylhexyl, 3 -methylhexyl, 4- methylhexyl, 5 -methylhexyl, 2,3 -dimethylbutyl, and the like. The alkyl is attached to the parent molecule by a single bond. Unless stated otherwise in the specification, an alkyl group is optionally substituted by one or more of substituents which independently include: acyl, alkyl, alkenyl, alkynyl, alkoxy, alkylaryl, cycloalkyl, aralkyl, aryl, aryloxy, amino, amido, amidino, imino, azide, carbonate, carbamate, carbonyl, heteroalkyl, heteroaryl, heteroarylalkyl, heterocycloalkyl, hydroxy, cyano, halo, haloalkoxy, haloalkyl, ester, ether, mercapto, thio, alkylthio, arylthio, thiocarbonyl, nitro, oxo, phosphate, phosphonate, phosphinate, silyl, sulfinyl, sulfonyl, sulfonamidyl, sulfoxyl, sulfonate, urea, -Si(Rx)3 , -ORX, -SRX, -OC(O)-RX, -N(RX)2, - C(O)RX, -C(O)ORX, -OC(O)N(RX)2, -C(O)N(RX)2, -N(RX)C(O)ORX, -N(RX)C(O)RX, - N(RX)C(O)N(RX)2, -N(RX)C(NRX)N(RX)2, -N(Rx)S(O)tN(Rx)2 (where t is 1 or 2), -P(=O)(RX)(RX), or -O-P(=O)(ORX)2 wherein each Rx is independently hydrogen, alkyl, haloalkyl, carbocyclyl, carbocyclylalkyl, aryl, aralkyl, heterocycloalkyl, heterocycloalkylalkyl, heteroaryl or heteroarylalkyl, and each of these moieties can be optionally substituted as defined herein. In a non-limiting embodiment, a substituted alkyl can be selected from fluoromethyl, difluoromethyl, trifluoromethyl, 2-fluoroethyl, 3 -fluoropropyl, hydroxymethyl, 2-hydroxy ethyl, 3- hydroxypropyl, benzyl, and phenethyl.
[0051] Unless otherwise specifically defined, the term “aromatic” or “aryl” refers to cyclic, aromatic hydrocarbon groups that have 1 to 2 aromatic rings, including monocyclic or bicyclic groups such as phenyl, biphenyl or naphthyl. Where containing two aromatic rings (bicyclic, etc.), the aromatic rings of the aryl group may be joined at a single point (e g., biphenyl), or fused (e.g., naphthyl). The aryl group may be optionally substituted by one or more substituents, e g., 1 to 5 substituents, at any point of attachment. Exemplary substituents include, but are not limited to, H, halogen, -O-C1-C6 alkyl, C1-C6 alkyl, -C1-C6 alkenyl, -OC1-C6 alkynyl, -C1-C6 alkenyl, -C1-C6 alkynyl, -OH, -OP(O)(OH)2, -OC(O)C1-C6 alkyl, -C(O)C1-C6 alkyl, -OC(O)OC1- C6alkyl, NH2, NH(CI-C6 alkyl), N(CI-C6 alkyl)2, -S(O)2-C1-C6 alkyl, -S(O)NHC1-C6alkyl, and S(O)N(CI-C6 alkyl)2. The substituents can themselves be optionally substituted. Furthermore, when containing two fused rings the aryl groups herein defined may have an unsaturated or partially saturated ring fused with a fully unsaturated ring. Exemplary ring systems of these aryl groups include indanyl, indenyl, tetrahydronaphthalenyl, and tetrahydrobenzoannulenyl.
[0052] The term “halogen” or “halo” refers to fluorine (F), chlorine (Cl), bromine (Br) and iodine (I).
[0053] As used herein, the terms “heteroaryl” or “hetero-aromatic” refer to groups having 5 to 14 ring atoms, preferably 5, 6, 9, or 10 ring atoms; having 6, 10, or 14 p electrons shared in a cyclic array; and having, in addition to carbon atoms, from one to three heteroatoms per ring selected from the group consisting of N, O, and S. Examples of heteroaryl groups include acridinyl, azocinyl, benzimidazolyl, benzofuranyl, benzothiofuranyl, benzothiophenyl, benzoxazolyl, benzthiazolyl, benztriazolyl, benztetrazolyl, benzisoxazolyl, benzisothiazolyl, benzimidazolinyl, carbazolyl, 4aH-carbazolyl, carbolinyl, chromanyl, chromenyl, cinnolinyl, 6,7-dihydro-5H-pyrrolo[l,2- a]imidazole, furanyl, furazanyl, imidazolinyl, imidazolyl, 1H- indazolyl, indolenyl, indolinyl, indolizinyl, indolyl, 3H-indolyl, isobenzofuranyl, isochromanyl, isoindazolyl, isoindolinyl, isoindolyl, isoquinolinyl, isothiazolyl, isoxazolyl, methylenedioxyphenyl, naphthyridinyl, octahydroisoquinolinyl, oxadiazolyl, 1,2,3-oxadiazolyl, 1,2,4-oxadiazolyl, 1,2,5-oxadiazolyl, 1,3,4-oxadiazolyl, oxazolidinyl, oxazolyl, oxazolidinyl, pyrimidinyl, phenanthridinyl, phenanthrolinyl, phenazinyl, phenothiazinyl, phenoxathiinyl, phenoxazinyl, phthalazinyl, piperonyl, pteridinyl, purinyl, pyranyl, pyrazinyl, pyrazolidinyl, pyrazolinyl, pyrazolyl, pyridazinyl, pyridooxazole, pyridoimidazole, pyridothiazole, pyridinyl, pyridyl, pyrimidinyl, pyrrolinyl, 2H-pyrrolyl, pyrrolyl, quinazolinyl, quinolinyl, 4H-quinolizinyl, quinoxalinyl, quinuclidinyl, tetrahydroisoquinolinyl, tetrahydroquinolinyl, tetrazolyl, 6H-1,2,5- thiadiazinyl, 1,2,3-thiadiazolyl, 1 ,2,4-thiadiazolyl, 1,2,5-thiadiazolyl, 1,3,4-thiadiazolyl, thianthrenyl, thiazolyl, thienyl, thienothiazolyl, thienooxazolyl, thienoimidazolyl, thiophenyl, triazinyl, 1,2,3- triazolyl, 1 ,2,4-triazolyl, 1,2,5-triazolyl, 1,3,4-triazolyl, and xanthenyl.
“Heteroaryl” also refers to bicyclic ring systems having, in addition to carbon atoms, from one to three heteroatoms per ring selected from the group consisting of N, O, and S in which one ring system may be saturated or partially saturated.
[0054] Heteroaryl groups may be substituted with 0, 1 , 2, 3, or 4 substituents independently selected from alkenyl, alkoxy, alkoxyalkoxy, alkoxyalkyl, alkoxycarbonyl, alkoxycarbonylalkyl, alkyl, alkylcarbonyl, alkylcarbonylalkyl, alkylcarbonyloxy, alkylthio, alkylthioalkyl, alkynyl, carboxy, carboxyalkyl, cyano, cyanoalkyl, formyl, haloalkoxy, haloalkyl, halogen, hydroxy, hydroxyalkyl, mercapto, nitro, -NZ1Z2, and (NZiZ2)carbonyl. The term "NZ1Z2" as used herein, means two groups, Zi and Z2, which are appended to the parent molecular moiety through a nitrogen atom. Zi and Z2 are each independently selected from the group consisting of hydrogen, alkyl, alkylcarbonyl, and formyl. Representative examples of NZ1Z2 include, but are not limited to, amino, methylamino, acetylamino, and acetylmethylamino.
[0055] As used herein, the term “alkoxy” refers to an -O-alkyl radical.
[0056] As used herein, the terms “cycloalkyl” and “carbocyclyl” each refers to a monocyclic or polycyclic radical that contains only carbon and hydrogen, and can be saturated or partially unsaturated. Unless stated otherwise in the specification, the term is intended to include both substituted and unsubstituted cycloalkyl groups. Partially unsaturated cycloalkyl groups can be termed "cycloalkenyl" if the carbocycle contains at least one double bond, or "cycloalkynyl" if the carbocycle contains at least one triple bond. Cycloalkyl groups include groups having from 3 to 13 ring atoms (i.e., C3-13 cycloalkyl). Whenever it appears herein, a numerical range such as "3 to 10" refers to each integer in the given range; e.g., "3 to 13 carbon atoms" means that the cycloalkyl group can consist of 3 carbon atoms, 4 carbon atoms, 5 carbon atoms, etc., up to and including 13 carbon atoms. The term "cycloalkyl" also includes bridged and spiro-fused cyclic structures containing no heteroatoms. The term also includes monocyclic or fused-ring polycyclic (i.e., rings which share adjacent pairs of ring atoms) groups. Polycyclic aryl groups include bicycles, tricycles, tetracycles, and the like. In some embodiments, “cycloalkyl” can be a C3-8 cycloalkyl radical. In some embodiments, “cycloalkyl” can be a C3-5 cycloalkyl radical. Illustrative examples of cycloalkyl groups include, but are not limited to the following moieties: C3-6 carbocyclyl groups include, without limitation, cyclopropyl (C3), cyclobutyl (C4), cyclopentyl (C5), cyclopentenyl (C5), cyclohexyl (C6), cyclohexenyl (C6), cyclohexadienyl (C6) and the like. Examples of C3-7 carbocyclyl groups include norbomyl (C7). Examples of C3-8 carbocyclyl groups include the aforementioned C3-7 carbocyclyl groups as well as cycloheptyl (C?), cycloheptadienyl (C7), cycloheptatrienyl (C7), cyclooctyl (Cs), bicyclo[2.2.1 ]heptanyl, bicyclo[2.2.2]octanyl, and the like. Examples of C3-13 carbocyclyl groups include the aforementioned C3-8 carbocyclyl groups as well as octahydro-lH indenyl, decahydronaphthalenyl, spiro[4.5]decanyl and the like. Unless stated otherwise in the specification, a cycloalkyl group can be optionally substituted by one or more substituents which independently include: acyl, alkyl, alkenyl, alkynyl, alkoxy, alkylaryl, cycloalkyl, aralkyl, aryl, aryloxy, amino, amido, amidino, imino, azide, carbonate, carbamate, carbonyl, heteroalkyl, heteroaryl, heteroarylalkyl, heterocycloalkyl, hydroxy, cyano, halo, haloalkoxy, haloalkyl, ester, ether, mercapto, thio, alkylthio, arylthio, thiocarbonyl, nitro, oxo, phosphate, phosphonate, phosphinate, silyl, sulfinyl, sulfonyl, sulfonamidyl, sulfoxyl, sulfonate, urea, -Si(Ra)3 , -ORa, - SRa, -OC(O)-Ra, -N(Ra)2, -C(O)Ra, -C(O)ORa, -OC(O)N(Ra)2, -C(O)N(Ra)2, -N(Ra)C(O)ORa, - N(Ra)C(O)Ra, -N(Ra)C(O)N(Ra)2, -N(Ra)C(NRa)N(Ra)2, -N(Ra)S(O)tN(Ra)2 (where t is 1 or 2), - P(=O)(Ra)(Ra), or -O-P(=O)(ORa)2 where each Ra is independently hydrogen, alkyl, haloalkyl, carbocyclyl, carbocyclylalkyl, aryl, aralkyl, heterocycloalkyl, heterocycloalkylalkyl, heteroaryl or heteroarylalkyl, and each of these moieties can be optionally substituted as defined herein. The terms “cycloalkenyl" and "cycloalkynyl" mirror the above description of "cycloalkyl" wherein the prefix "alk" is replaced with "alken" or "alkyn" respectively, and the parent "alkenyl" or "alkynyl" terms are as described herein. For example, a cycloalkenyl group can have 3 to 13 ring atoms, such as 5 to 8 ring atoms. In some embodiments, a cycloalkynyl group can have 5 to 13 ring atoms.
[0057] As used herein, the term “heterocycloalkyl” refers to a cycloalkyl radical, which have one or more skeletal chain atoms selected from an atom other than carbon, e.g., O, N, S, P or combinations thereof. Unless stated otherwise in the specification, the term is intended to include both substituted and unsubstituted heterocycloalkyl groups. Illustrative examples of heterocycloalkyl include 2-hydroxy-aziridin-l-yl, 3-oxo-l-oxacyclobutan-2-yl, 2,2-dimethyl- tetrahydrofuran-3-yl, 3 -carboxy -morpholin-4-yl, l-cyclopropyl-4-methyl-piperazin-2-yl. 2- pyrrolinyl, 3-pyrrolinyl, dihydro-2H-pyranyl, 1,2,3,4-tetrahydropyridine, 3,4-dihydro-2H- [l,4]oxazine, etc.
[0058] As used herein, the terms “heterocycle”, “heterocyclic” or “heterocyclo” refer to fully saturated or partially unsaturated cyclic groups, for example, 3 to 7 membered monocyclic, 7 to 12 membered bicyclic, or 10 to 15 membered spirocyclic or tricyclic ring systems, which have at least one heteroatom (selected from the group consisting of N, O, and S) in at least one ring, wherein 0, 1, 2 or 3 atoms of each ring may be substituted by a substituent. Each ring of the heterocyclic group containing a heteroatom may have 1, 2, 3 or 4 heteroatoms selected from nitrogen atoms, oxygen atoms and/or sulfur atoms, where the nitrogen and sulfur heteroatoms may optionally be oxidized and the nitrogen heteroatoms may optionally be quatemized. The heterocyclic group may be attached at any heteroatom or carbon atom of the ring or ring system. A heterocyclic group is optionally substituted. Examples of heterocyclic groups include, but not limited to, epoxy, azetidinyl, aziridinyl, tetrahydrofuranyl, tetrahydropyranyl, pyrrolidinyl, pyrrolidinonyl, piperidinyl, piperazinyl, imidazolidinyl, imidazopyridinyl, thiazolidinyl, dithianyl, trithianyl, dioxolanyl, oxazolidinyl, oxazolidinonyl, decahydroquinolinyl, piperidonyl, 4-piperidinonyl, quinuclidinyl, thiomorpholinyl, thiomorpholinyl 1,1 dioxide, morpholinyl, azepanyl, oxazepanyl, azabicyclohexanyls, azabicycloheptanyl, azabicyclooctanyls, azabicyclononanyls (e.g., octahydroindolizinyl), azaspiroheptanyls, dihydro- 1H,3H,5H- oxazolo[3,4-c]oxazolyl, tetrahydro- 1'H, 3'H- spiro[cyclopropane-l,2'-pyrrolizine], hexahydro- IH-pyrrolizinyl, hexahydro- lH-pyrrolo[2,l- c][ 1,4] oxazinyl, octahydroindolizinyl, oxaazaspirononanyls, oxaazaspirooctanyls, diazaspirononanyls, oxaazabiocycloheptanyls, hexahydropyrrolizinyl 4(lH)-oxide, and tetrahydro- 2H-thiopyranyl 1 -oxide and tetrahydro-2H- thiopyranyl 1,1 -dioxide.
Detailed Description of the Invention
[0059] The invention is based in part on the discovery of KRas inhibitors, in particular KRas (G12D) inhibitors, that selectively target, bind to, inhibit or modulate the activity of KRas. The novel compounds exhibit favorable potency and selectivity as well as pharmacokinetics profiles suitable for development into an orally administered therapeutic agent for treating diseases and disorders associated with or related to KRas activities, such as various types of cancer.
[0060] In one aspect, the invention generally relates to a compound having the structural Formula (I):
Figure imgf000020_0001
I or a pharmaceutically acceptable form or an isotope derivative thereof, wherein
R1 is XR11 or NR12R13, wherein X is O, S or absent, R11 is (CH2)iR14, and z is an integer selected from 0-6 (e.g., 0, 1, 2, 3, 4, 5 or 6), wherein (CHi); is optionally substituted;
R2 is an unsubstituted or substituted 6- to 10-membered (e.g., 6-, 7-, 8-, 9- or 10- membered) unsaturated monocyclic or bicyclic ring, comprising 0-5 e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S;
R3 is L-R3 , wherein
L is a single bond or NR(CH2)k, wherein k is an integer selected from 0-3 (e.g., 0, 1, 2 or 3); and
R3 is an unsubstituted or substituted, 3- to 10-membered (e.g., 3-, 4-, 5-, 6-, 7-, 8- , 9- or 10-membered) saturated or unsaturated monocyclic, bicyclic or bridged ring moiety that comprises 0-5 (e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S; each of R4 and R5 is independently selected from the group consisting of H, halogen, CN, OH, unsubstituted or substituted Ci-4 alkyl, unsubstituted or substituted Ci-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R”, C(O)OR, unsubstituted or substituted 3- to 8- membered (e.g., 6-, 7- or 8-membered) carbocycle, and unsubstituted or substituted 3- to 8- membered (e.g., 6-, 7- or 8-membered) heterocycle, provided that (a) R4 and R5 are not H at the same time, and (b) where R4 is H R5 is an unsubstituted or substituted 3- to 8-membered e.g., 6-, 7- or 8-membered) carbocycle, or unsubstituted or substituted 3- to 8-membered (e.g., 6-, 7- or 8- membered) heterocycle; each of R12 and R13 is independently selected from the group consisting of H, unsubstituted or substituted C1-6 alkyl, unsubstituted or substituted carbocyclic ring, and unsubstituted or substituted heterocyclic ring; or R12 and R13, together with the N atom they are bound to, are joined to form an unsubstituted or substituted heterocyclic or heteroaryl ring; R14 is selected from the group consisting of H, halogen, CN, OH, NO2, unsubstituted or substituted Ci-6 alkyl, NRR’, C(O)NRR’, NRC(O)R”, SO2NRR’, NR-SO2R’, NRC(O)NRR’, C(O)CH2-aryl, C(O)OCH2-aryl, NRC(O)OCH2-phenyl, C(O)R”, OC(O)R”, C(O)OR, unsubstituted or substituted 3- to 6-membered e.g., 3-, 4-, 5-, 6-membered) carbocyclic ring, unsubstituted or substituted 4- to 6-membered e.g., 4-, 5-, 6-membered) heterocyclic ring; unsubstituted or substituted aryl, and unsubstituted or substituted heteroaryl; and each of R and R’ is independently selected from H, unsubstituted or substituted C1-4 alkyl, or unsubstituted or substituted 4- to 6-membered (e.g., 4-, 5- or 6-membered) carbocyclic ring, or where R and R’ are attached to the same N atom, together form an unsubstituted or substituted 4- to 6-membered (e.g., 4-, 5- or 6-membered) heterocyclic ring; and
R” is H, unsubstituted or substituted C1-4 alkoxy, unsubstituted or substituted C1.4 alkyl, or unsubstituted or substituted 4- to 6-membered (e.g., 4-, 5- or 6-membered) carbocyclic ring. [0061] In certain embodiments, at least one of R4 and R5 is not H.
[0062] In certain embodiments, one of R4 and R5 is H and the other is not H.
[0063] In certain embodiments, neither R4 nor R5 is H.
[0064] In certain embodiments, at least one of R4 and R5 is not H.
[0065] In certain embodiments, R4 is halogen, CN, OH, unsubstituted or substituted C1-4 alkyl, unsubstituted or substituted C1-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R” or C(O)OR.
[0066] In certain embodiments, R5 is halogen, CN, OH, unsubstituted or substituted C1-4 alkyl, unsubstituted or substituted C1-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R” or C(O)OR.
[0067] In certain embodiments, R5 is an unsubstituted or substituted 3- to 8-membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) carbocycle.
[0068] In certain embodiments, R5 is an unsubstituted or substituted 3- to 8-membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) heterocycle.
[0069] In certain embodiments, R4 is H and R5 is an unsubstituted or substituted 3- to 6- membered (e.g., 3-, 4-, 5- or 6-membered) carbocycle.
[0070] In certain embodiments, R4 is H and R5 is an unsubstituted or substituted 4- to 7- membered (e.g., 4-, 5-, 6- or 7-membered) heterocycle. [0071 ] In certain embodiments, one of R4 and R5 is a halogen and the other is selected from halogen, CN, methyl and ethyl.
[0072] In certain embodiments, one of R4 and R5 is a halogen and the other is selected from OH, OCH3, C(O)NH2 and C(O)NHCH3.
[0073] In certain embodiments, one of R4 and R5 is halogen, CN, methyl and ethyl and the other is an unsubstituted or substituted 3- to 8-membered (e.g, 3-, 4-, 5-, 6-, 7- or 8-membered) carbocycle.
[0074] In certain embodiments, one of R4 and R5 is halogen, CN, methyl and ethyl and the other is an unsubstituted or substituted 3- to 8-membered (e.g., 3-, 4-, 5-, 6-, 7- or 8-membered) heterocycle.
[0075] In certain embodiments, one of R4 and R5 is unsubstituted or substituted cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl.
[0076] In certain embodiments, one of R4 and R5 is unsubstituted or substituted tetrahydrofuran, tetrahydropyran, cyclic sulfone, cyclic sulfonamide, cyclic amide, cyclic carbamate, azetidine, pyrrolidine, piperidine, pyrazole, imidazole, 1, 3 -oxazole, 1,2-oxazole, 1,3- thiazole, 1, 2,4-triazole, 1,2, 3 -triazole, 1. 3,4-oxadiazole, 1,3,4-thiadiazole, furan, pyridine, pyrimidine, pyridazine, pyrazine, or triazine.
[0077] In certain embodiments, R1 is X(CH2)iR14, wherein X is O.
[0078] In certain embodiments, R14 is a C3-6 carbocyclic ring substituted with 0-5 (e. ., 0, 1,
2, 3, 4 or 5) R15, wherein each R15 is independently selected from D, halo, C1-3 alkyl optionally substituted with one or more of halo, OH, NRR’, CN, CONRR’ or SO2NRR’.
[0079] In certain embodiments, z is 1.
[0080] In certain embodiments, R14 is C3-4 cycloalkyl ring substituted with 0-5 (e.g., 0, 1, 2,
3, 4 or 5) R15.
[0081] In certain embodiments, R1 has the structure:
Figure imgf000022_0001
wherein Rx is OH, halo, NRR’, CN, CONRR’ or SO2NRR’.
[0082] In certain embodiments, R15 is F, m is 0, 1 or 2, and Rx is CH2OH. [0083] In certain embodiments, R1 has the structure:
Figure imgf000023_0001
wherein Rx is OH, halo, NRR’, CN, CONRR’ or SO2NRR’.
[0084] In certain embodiments, R15 is F, m is 0, 1 or 2, and CH2OH.
[0085] In certain embodiments, R1 is NR12R13.
[0086] In certain embodiments, X is absent and R1 is (CH2)iR14.
[0087] In certain embodiments, R14 is NRR’ .
[0088] In certain embodiments, R14 comprises one or more of amino, amide, sulfonamide, and carboxylic ester groups.
[0089] In certain embodiments, R14 is a mono- or bicyclic, unsubstituted or substituted C4-10 heterocyclic ring.
[0090] In certain embodiments, R14 is a monocyclic, unsubstituted or substituted C4-7 heterocyclic ring.
[0091] In certain embodiments, R14 is a bicyclic, unsubstituted or substituted Ce-io heterocyclic ring.
[0092] In certain embodiments, R14 has the structure of:
Figure imgf000023_0002
wherein
Ring E is a 4- to 7-membered (e.g., 4-, 5-, 6- or 7-membered) unsubstituted or substituted monocyclic or bicyclic carbocyclic of heterocyclic ring;
W is O, S, N, NR, C(O), S(O)2, NHC(O), C(O)NH, OC(O), C(O)O, S(O)2NH, or NHS(O)2; and
R15 is selected from the group consisting of halogen, OH, CN, C1-6 alkyl, C1-6 alkoxy, =CRR’, NRR’, C(O)NRR’, NRC(O)R”, NRC(O)NRR’, C(O)R, C(O)OR, S(O)2NRR’, or NRS(O)2R, S(O)2NRR’ and NRS(O)2NRR’ .
[0093] Additional non-limiting examples of R14 include:
Figure imgf000024_0001
wherein R13 is as defined herein.
[0094] In certain embodiments, R1 is X(CH2);R14, wherein X is S.
[0095] In certain embodiments, R1 is NR12R13.
[0096] In certain embodiments, R1 has the structure of:
Figure imgf000025_0001
wherein each of Ring C and Ring D is a 4- to 7-memebered heterocyclic ring;
X is O or S; each of R15 and R16 is independently selected from the group consisting of halogen, OH, CN, NRR’, =CRR’, Ci-6 alkyl and Ci-6 alkoxy; i is 0, 1, 2, 3 or 4; and each of m and n is independently 0, 1, 2 or 3.
[0097] In certain embodiments, R1 has the structure of:
Figure imgf000025_0002
wherein each of T1 and T2 is independently CR17R18, C=CR17R18, NR19, O, S or S(O)2; each of R17 and R18 is independently selected from the group consisting of: H, halo, Ci-6 alkyl, and Ci-6 alkoxy;
R19 is selected from the group consisting of: H, Ci-6 alkyl, and Ci-g alkoxy; each of g, p and q is independently 0, 1, 2 or 3, provided that if one of f and p is 0, the other is not 0 and if one of g and g is 0, the other is not 0; and each of m and n is independently 0, 1, 2 or 3.
[0098] In certain embodiments, each of T1 and T2 is CR17R18, each of g,p and q is 1, with R1 having the structure of:
Figure imgf000026_0001
[0099] In certain embodiments, T1 is C=CR17R18 and T2 is CR17R18, each of g,p and q is 1, with R1 having the structure of:
Figure imgf000026_0002
wherein each of R17 and R18 is independently H or halo.
[00100] In certain embodiments, the following group has the indicated chirality:
Figure imgf000026_0003
[00101] In certain embodiments, m is 0, n is 1, and R16 is F. In certain embodiments, X is O. In certain embodiments, i is 1.
[00102] In certain embodiments, X is absent and R1 is (CH2)iR14.
[00103] In certain embodiments, R14 is NRR’.
[00104] In certain embodiments, R14 comprises one or more of amino, amide, sulfonamide, and carboxylic ester groups.
[00105] In certain embodiments, R14 is a mono- or bicyclic, unsubstituted or substituted C4-10 heterocyclic ring. In certain embodiments, R14 is a monocyclic, unsubstituted or substituted C4-7 heterocyclic ring. In certain embodiments, R14 is a bicyclic, unsubstituted or substituted Ce-io heterocyclic ring.
[00106] Non-limiting examples of R14 include:
Figure imgf000027_0001
wherein R13 and R16 are as defined herein.
[00107] In certain embodiments, R2 is an unsubstituted or substituted 6- to 10-membered (e.g., 5-, 6-, 7-, 8-, 9- or 10-membered) unsaturated bicyclic ring, comprising 0-5 (e.g., 0, 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S.
[00108] In certain embodiments, R2 has the structure of:
Figure imgf000027_0002
wherein
Ring A is a 6-membered aryl or heteroaryl ring with 0-2 N atoms;
Ring B is a 5- or 6-membered aryl or heteroaryl with 0-3 (e.g., 0, 1, 2 or 3) heteroatoms selected from N, O and S; each of R21 and R22 is independently selected from the group consisting of halogen, OH, CN, NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, (CH2)XNRR’, (CH2)XC(=O)NRR’, (CH2)XOC(=O)R, (CH2)XOC(=O)OR; each of m and n is independently 0, 1, 2 or 3; and each x is independently 0, 1 or 2.
[00109] In certain embodiments, R2 is:
Figure imgf000028_0001
wherein each of Z1 and Z2 is independently selected from CH and N.
[00110] In certain embodiments, each of Z1 and Z2 is CH.
[00111] In certain embodiments, Z1 is CH and Z2 is N.
[00112] In certain embodiments, Z1 is Z and Z2 is CH.
[00113] In certain embodiments, each of Z1 and Z2 is N.
[001 14] In certain embodiments, R2 is:
Figure imgf000028_0002
wherein each of Z1 and Z2 is independently selected from CH and N; and each of Z3, Z4 and Z5 is independently selected from CR”, N, NR, O or S, provided that Ring B remains an aromatic ring, wherein R is H or a Ci-4 alkyl.
[00115] In certain embodiments, each of Z1 and Z2 is CH.
[001 16] In certain embodiments, Z1 is CH and Z2 is N.
[00117] In certain embodiments, Z1 is Z and Z2 is CH.
[00118] In certain embodiments, each of Z1 and Z2 is N.
[0011 ] In certain embodiments, each of Z3, Z4 and Z5 is not a heteroatom. [00120] In certain embodiments, at least one of Z3, Z4 and Z5 is a heteroatom.
[00121] Exemplary R2 groups include:
Figure imgf000029_0001
wherein R21 and R22 are as defined herein.
[00122] Non-limiting examples of R2 include:
Figure imgf000029_0002
Figure imgf000030_0001
Figure imgf000031_0001
[00123] In certain embodiments, R3 is an unsubstituted or substituted, saturated or unsaturated bicyclic or bridged ring moiety that comprises at least one N atom.
[00124] In certain embodiments, L is a single bond.
[00125] In certain embodiments, R3 is:
Figure imgf000031_0002
wherein
Y1 is N or CR”;
Y2 is (CH2)j, NR or CH2OCH2;
Y3 is NR, CR”, O or S; each R31 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; each j is independently 0, 1, 2 or 3; and m is 0, 1, 2 or 3.
[00126] In certain embodiments, j is 2. In certain embodiments, j is 1. In certain embodiments, is 0. [00127] In certain embodiments, m is 2 Tn certain embodiments, m is 1 . Tn certain embodiments, m is 0.
[00128] In c i b di t R3 i
Figure imgf000032_0001
, , or
[00129] In certain embodiments, Y3 is NR.
[00130] In certain embodiments, Y3 is CR”.
[00131] In certain embodiments, Y3 is O.
[00132] In certain embodiments, Y3 is S.
[00133] In certain embodiments, j is 2.
[00134] In certain embodiments, R3 is:
Figure imgf000032_0002
[00135] In certain embodiments, Y3 is NR.
[00136] In certain embodiments, Y3 is CR”.
[00137] Non-limiting examples of R3 include:
Figure imgf000032_0003
Figure imgf000033_0001
wherein R, R’ and m are as defined herein.
[00138] In certain embodiments, m is 0.
[00139] In certain embodiments, m is 1.
[00140] In certain embodiments of formula (I), L is a single bond and R3 is an unsubstituted or substituted, 3- to 10-membered (e.g., 3-, 4-, 5-, 6-, 7-, 8-, 9- or 10-membered) saturated or unsaturated monocyclic that comprises 0-3 (e.g., 0, 1, 2 or 3) heteroatoms selected from N, O and S. [00141 ] In certain embodiments, R3 is an unsubstituted or substituted, 6-membered saturated or unsaturated monocyclic that comprises 1-3 heteroatoms selected from N, O and S.
[00142] In certain embodiments, R3 has the structure:
Figure imgf000034_0001
wherein
Ring G is a 5- to 7-membered (<?.g., 5-, 6- or 7-membered) heterocyclic ring with 1-3 heteroatoms selected from N, O and S; each R32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy,
NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; and m is 0, 1, 2 or 3.
[00143] In certain embodiments, Ring G is 6-membered.
[00144] In certain embodiments, R3 is an unsubstituted or substituted, 10- to 12-membered (e.g., 10-, 11- or 12-membered) saturated or unsaturated bicyclic that comprises 1-5 (e.g., 1, 2, 3, 4 or 5) heteroatoms selected from N, O and S.
[00145] In certain embodiments, R3 has the structure:
Figure imgf000034_0002
wherein
Rings F and H together form a hetero-bicyclic ring; each R32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; and m is 0, 1, 2 or 3. [00146] In certain embodiments, Ring F is 7-membered and Ring H is 5-membered.
[00147] In certain embodiments of formula (I), L is NR(CH2)k and R3 is NR(CH2)kR3 .
[00148] In certain embodiments, k is 0.
[00149] In certain embodiments, k is 1.
[00150] In certain embodiments, R3 is an unsubstituted or substituted, 3- to 6-membered (e.g., 3-, 4-, 5-, 6-membered) monocyclic ring moiety that comprises 0-3 (e.g., 0, 1, 2 or 3) heteroatoms selected from N, O and S.
[00151] In certain embodiments, R3 has the structure:
Figure imgf000035_0001
wherein
Ring J is a 5- to 7-membered (e.g., 5-, 6- or 7-membered) carbocyclic or heterocyclic ring with 0-3 (e.g., 0, 1 , 2 or 3) heteroatoms selected from N, O and S; each R32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; and m is 0, 1, 2 or 3.
[00152] In certain embodiments, Ring J is 6-membered.
[00153] In certain embodiments of formula (I), the compound has the structural formula:
Figure imgf000035_0002
[00154] In certain embodiments of formula (I), the compound has the structural formula:
Figure imgf000036_0001
wherein
Ring K is a C3-4 cycloalkyl;
Rx is OH, halo, NRR’, CN, CONRR’ or SO2NRR’; and m is 0, 1, 2 or 3.
[00155] In certain embodiments of formula (I), the compound has the structural formula:
Figure imgf000036_0002
wherein
Rings F and H together form a hetero-bicyclic ring; each R32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted C1-6 alkyl, and unsubstituted or substituted C1-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; and m is 0, 1, 2 or 3.
[00156] In certain embodiments of formula (I), the compound has the structural formula:
Figure imgf000037_0001
wherein
R3 is an unsubstituted or substituted, 3- to 6-membered (e.g., 3-, 4-, 5-, 6-membered) monocyclic ring moiety that comprises 0-3 (e.g., 0, 1, 2 or 3) heteroatoms selected from N, O and S; and k is 0, 1 or 2.
[00157] In certain embodiments a disclosed compound has the chirality shown below:
Figure imgf000037_0002
[00158] Non-limiting examples of compounds of the present invention include:
Figure imgf000037_0003
Figure imgf000038_0001
Figure imgf000039_0001
Figure imgf000040_0001
Figure imgf000041_0001
Figure imgf000042_0002
[00159] In certain embodiments, a compound of the invention is selected from Table 1.
Table 1 List of Exemplary Compounds
Figure imgf000042_0001
Figure imgf000043_0001
Figure imgf000044_0001
Figure imgf000045_0001
Figure imgf000046_0001
Figure imgf000047_0001
Figure imgf000048_0003
[00160] In certain embodiments, the invention provides one or more pro-drug versions of a compound disclosed herein.
[00161] In certain embodiments, a pro-drug comprises an ester, a carbonate and/or a carbamate moiety.
[00162] In certain embodiments, one or both of R2 and R3 in formula (I) comprises an ester, a carbonate and/or a carbamate moiety.
[00163] In certain embodiments, the ester, carbonate and carbamate moi eties are selected from:
Figure imgf000048_0001
R or R’ = H or substituted or unsubstituted Ci-6 alkyl or substituted or unsubstituted 3- to 6- membered (e.g., 3-, 4-, 5-, or 6-membered) carbocycle.
[00164] In certain embodiments, the ester, carbonate and carbamate moi eties are selected from:
Figure imgf000048_0002
Figure imgf000049_0001
[00165] In certain embodiments, a compound of invention has one or more deuterium atoms in place of hydrogen. In certain embodiments, a compound of invention has one deuterium atom in place of a hydrogen atom.
[00166] In another aspect, the invention generally relates to a pharmaceutical composition comprising a compound disclosed herein and a pharmaceutically acceptable excipient, carrier, or diluent.
[00167] In certain embodiments, the pharmaceutical composition is suitable for oral administration.
[00168] In yet another aspect, the invention generally relates to a unit dosage form comprising a pharmaceutical composition disclosed herein.
[00169] In certain embodiments, the unit dosage form is in the form of a tablet or capsule. [00170] Pharmaceutically acceptable carriers, adjuvants and vehicles that may be used in the pharmaceutical compositions of this invention include, but are not limited to, ion exchangers, alumina, aluminum stearate, lecithin, serum proteins, such as human serum albumin, buffer substances such as phosphates, glycine, sorbic acid, potassium sorbate, partial glyceride mixtures of saturated vegetable fatty acids, water, salts or electrolytes, such as protamine sulfate, disodium hydrogen phosphate, potassium hydrogen phosphate, sodium chloride, zinc salts, colloidal silica, magnesium trisilicate, polyvinyl pyrrolidone, cellulose-based substances, polyethylene glycol, sodium carboxymethylcellulose, polyacrylates, waxes, polyethylene-polyoxypropylene-block polymers, polyethylene glycol and wool fat.
[00171] The pharmaceutical compositions of the invention include those suitable for oral, rectal, nasal, topical (including buccal and sublingual), vaginal or parenteral (including subcutaneous, intramuscular, intravenous and intradermal) administration. In certain embodiments, the compound of the formulae herein is administered transdermally (e.g., using a transdermal patch). Other formulations may conveniently be presented in unit dosage form, e g., tablets and sustained release capsules, and in liposomes, and may be prepared by any methods well known in the art of pharmacy. See, for example, Remington’s Pharmaceutical Sciences, Mack Publishing Company, Philadelphia, PA (17th ed. 1985).
[00172] Such preparative methods include the step of bringing into association with the molecule to be administered ingredients such as the carrier that constitutes one or more accessory ingredients. In general, the compositions are prepared by uniformly and intimately bringing into association the active ingredients with liquid carriers, liposomes or finely divided solid carriers or both, and then if necessary, shaping the product.
[00173] Solid dosage forms for oral administration include capsules, tablets, pills, powders, and granules. In such solid dosage forms, the compounds described herein or derivatives thereof are admixed with at least one inert customary excipient (or carrier) such as sodium citrate or dicalcium phosphate or (i) fillers or extenders, as for example, starches, lactose, sucrose, glucose, mannitol, and silicic acid, (ii) binders, as for example, carboxymethylcellulose, alginates, gelatin, polyvinylpyrrolidone, sucrose, and acacia, (iii) humectants, as for example, glycerol, (iv) disintegrating agents, as for example, agar-agar, calcium carbonate, potato or tapioca starch, alginic acid, certain complex silicates, and sodium carbonate, (v) solution retarders, as for example, paraffin, (vi) absorption accelerators, as for example, quaternary ammonium compounds, (vii) wetting agents, as for example, cetyl alcohol, and glycerol monostearate, (viii) adsorbents, as for example, kaolin and bentonite, and (ix) lubricants, as for example, talc, calcium stearate, magnesium stearate, solid polyethylene glycols, sodium lauryl sulfate, or mixtures thereof. In the case of capsules, tablets, and pills, the dosage forms may also comprise buffering agents. Solid compositions of a similar type may also be employed as fdlers in soft and hard- filled gelatin capsules using such excipients as lactose or milk sugar as well as high molecular weight polyethyleneglycols, and the like. Solid dosage forms such as tablets, dragees, capsules, pills, and granules can be prepared with coatings and shells, such as enteric coatings and others known in the art.
[00174] Liquid dosage forms for oral administration include pharmaceutically acceptable emulsions, solutions, suspensions, syrups, and elixirs. In addition to the active compounds, the liquid dosage forms may contain inert diluents commonly used in the art, such as water or other solvents, solubilizing agents, and emulsifiers, such as for example, ethyl alcohol, isopropyl alcohol, ethyl carbonate, ethyl acetate, benzyl alcohol, benzyl benzoate, propyleneglycol, 1 ,3- butyleneglycol, dimethylformamide, oils, in particular, cottonseed oil, groundnut oil, corn germ oil, olive oil, castor oil, sesame oil, glycerol, tetrahydrofurfuryl alcohol, polyethyleneglycols, and fatty acid esters of sorbitan, or mixtures of these substances, and the like. Besides such inert diluents, the composition can also include additional agents, such as wetting, emulsifying, suspending, sweetening, flavoring, or perfuming agents.
[00175] In yet another aspect, the invention generally relates to a method for inhibiting cell proliferation in vitro or in vivo, comprising contacting a cell with an effective amount of a compound disclosed herein.
[00176] In yet another aspect, the invention generally relates to a method for inhibiting KRas(G12D) activity in a cell, comprising contacting the cell with a compound disclosed herein. [00177] In yet another aspect, the invention generally relates to a method for treating a disease or disorder mediated by a Ras mutant protein, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
[00178] In yet another aspect, the invention generally relates to a method for treating or reducing cancer, or a related disease or disorder, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
[00179] In yet another aspect, the invention generally relates to a method for treating or reducing cancer, or a related disease or disorder, comprising administering to a subject in need thereof a therapeutically effective amount of the compound disclosed herein.
[00180] In yet another aspect, the invention generally relates to use of a compound disclosed herein, and a pharmaceutically acceptable excipient, carrier, or diluent, in preparation of a medicament for treating a disease or disorder.
[00181] Examples of diseases or disorders that may be treated or reduced by compositions or methods of the invention include, but are not limited to, tumors, cancers, autoimmune diseases, macroglob id in emi a, and the like.
[00182] In certain embodiments, the cancer is selected from the group consisting of carcinoma, squamous carcinoma, adenocarcinoma, sarcoma, leukemia, neuroma, melanoma, and lymphoma.
[00183] Examples of cancers targeted in the present invention include, but are not particularly Limited to, head and neck cancer, digestive organ cancer (esophageal cancer, stomach cancer, duodenal cancer, liver cancer, biliary cancer (e.g., gallbladder and bile duct cancer), pancreatic cancer, colorectal cancer (e.g., colon cancer, and rectal cancer), etc.), lung cancer (e.g., non- small-cell lung cancer, small-cell lung cancer, and mesothelioma), breast cancer, genital cancer (ovarian cancer, uterine cancer (e.g., cervical cancer and endometrial cancer), etc.), urological cancer (e.g., kidney cancer, bladder cancer, prostate cancer, and testicular tumor), hematopoietic tumor (e.g., leukemia, lymphoma, malignant lymphoma, and multiple myeloma), sarcoma (e.g., osteosarcoma, and soft-tissue sarcoma), skin cancer, brain tumor, a carcinoma, squamous carcinoma, adenocarcinoma, neuroma, melanoma and the like. Examples include lung cancer, pancreatic cancer, rectal cancer, colon cancer colorectal cancer and uterine cancer. In certain embodiments, squamous carcinoma is a cancer of uterine cervix, tarsus, conjunctiva, vagina, lung, oral cavity, skin, bladder, tongue, larynx or esophagus. In one embodiment, adenocarcinoma is a cancer of prostate, small intestine, endometrium, uterine cervix, large intestine, lung, pancreas, esophagus, rectum, uterus, stomach, breast or ovary. In certain embodiments, tumor is rectal cancer, colon cancer, colorectal cancer, pancreatic cancer, lung cancer, breast cancer leukemia or uterine cancer.
[00184] In certain embodiments, the cancer is selected from the group consisting of pancreatic cancer, colorectal cancer, lung cancer, endometrial cancer, appendix cancer, cholangiocarcinoma, bladder urothelial cancer, ovarian cancer, gastric cancer, breast cancer, bile duct cancer, and a hematologic malignancy.
[00185] In certain embodiments, a subject suffering from any of the disease selected from the above does not have to have KRAS G12D mutant protein. In certain embodiments, a subject suffering from any of the disease selected from the above has KRAS G12D mutant protein.
[00186] In certain embodiments, the subject has a mutation of KRAS, HRAS and/or NRAS.
[00187] The amount of the active compound administered will be dependent on the subject being treated, the severity of the disorder or condition, the route of administration, the disposition of the compound and the discretion of the prescribing physician. In some instances, dosage levels below the lower limit of the aforesaid range may be more than adequate, while in other cases still larger doses may be used without causing any harmful side effect, with such larger doses typically divided into several smaller doses for administration throughout the day. [00188] Any appropriate route of administration can be employed, for example, oral, intramuscular, intravenous, transdermal, subcutaneous, sublingual, parenteral, nasal, pulmonary, inhalational, buccal, intraperintoneal, rectal, intrapleural, and intrathecal administration. Most suitable means of administration for a particular patient will depend on the nature and severity of the disease or condition being treated or the nature of the therapy being used and on the nature of the active compound.
[00189] In certain preferred embodiments, the compound is administered orally. Pharmaceutical compositions of the present invention suitable for oral administration may be presented as discrete units such as capsules, sachets or tablets each containing a predetermined amount of the active ingredient; as a powder or granules; as a solution or a suspension in an aqueous liquid or a non-aqueous liquid; or as an oil-in-water liquid emulsion or a water-in-oil liquid emulsion, or packed in liposomes and as a bolus, etc. Soft gelatin capsules can be useful for containing such suspensions, which may beneficially increase the rate of compound absorption.
[00190] A tablet may be made by compression or molding, optionally with one or more accessory ingredients. Compressed tablets may be prepared by compressing in a suitable machine the active ingredient in a free-flowing form such as a powder or granules, optionally mixed with a binder, lubricant, inert diluent, preservative, surface-active or dispersing agent. Molded tablets may be made by molding in a suitable machine a mixture of the powdered compound moistened with an inert liquid diluent. The tablets optionally may be coated or scored and may be formulated so as to provide slow or controlled release of the active ingredient therein. Methods of formulating such slow or controlled release compositions of pharmaceutically active ingredients, such as those herein and other compounds known in the art, are known in the art and described in several issued US Patents, some of which include, but are not limited to, US Patent Nos. 4,369,172; and 4,842,866, and references cited therein. Coatings can be used for delivery of compounds to the intestine (see, e.g., U.S. Patent Nos. 6,638,534, 5,217,720, and 6,569,457, 6,461,631, 6,528,080, 6,800,663, and references cited therein). A useful formulation for the compounds of this invention is the form of enteric pellets of which the enteric layer comprises hydroxypropylmethylcellulose acetate succinate.
[00191] In the case of tablets for oral use, carriers that are commonly used include lactose and corn starch. Lubricating agents, such as magnesium stearate, are also typically added. For oral administration in a capsule form, useful diluents include lactose and dried cornstarch. When aqueous suspensions are administered orally, the active ingredient is combined with emulsifying and suspending agents. If desired, certain sweetening and/or flavoring and/or coloring agents may be added.
[00192] Compositions suitable for topical administration include lozenges comprising the ingredients in a flavored basis, usually sucrose and acacia or tragacanth; and pastilles comprising the active ingredient in an inert basis such as gelatin and glycerin, or sucrose and acacia.
[00193] Compositions suitable for parenteral administration include aqueous and non-aqueous sterile injection solutions which may contain anti-oxidants, buffers, bacteriostats and solutes which render the formulation isotonic with the blood of the intended recipient; and aqueous and non-aqueous sterile suspensions which may include suspending agents and thickening agents. The formulations may be presented in unit-dose or multi-dose containers, for example, sealed ampules and vials, and may be stored in a freeze dried (lyophilized) condition requiring only the addition of the sterile liquid carrier, for example water for injections, immediately prior to use. Extemporaneous injection solutions and suspensions may be prepared from sterile powders, granules and tablets.
[00194] Such injection solutions may be in the form, for example, of a sterile injectable aqueous or oleaginous suspension. This suspension may be formulated according to techniques known in the art using suitable dispersing or wetting agents (such as, for example, Tween 80) and suspending agents. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example, as a solution in 1 ,3 -butanediol. Among the acceptable vehicles and solvents that may be employed are mannitol, water, Ringer's solution and isotonic sodium chloride solution. In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium. For this purpose, any bland fixed oil may be employed including synthetic mono- or diglycerides. Fatty acids, such as oleic acid and its glyceride derivatives are useful in the preparation of injectables, as are natural pharmaceutically-acceptable oils, such as olive oil or castor oil, especially in their polyoxyethylated versions. These oil solutions or suspensions may also contain a long-chain alcohol diluent or dispersant.
[00195] Compounds of the present invention may also be administered in the form of liposomes. As is known in the art, liposomes are generally derived from phospholipids or other lipid substances. Liposomes are formed by mono- or multi-lamellar hydrated liquid crystals that are dispersed in an aqueous medium. Any non-toxic, physiologically acceptable and metabolizable lipid capable of forming liposomes can be used. The present compositions in liposome form can contain, in addition to a compound of the present invention, stabilizers, preservatives, excipients, and the like. The preferred lipids are the phospholipids and the phosphatidyl cholines (lecithins), both natural and synthetic. Methods to form liposomes are known in the art. See, for example, Prescott, Ed., Methods in Cell Biology, Volume XIV, Academic Press, New York, N.Y. (1976), p. 33 et seq.
[00196] The pharmaceutical compositions of this invention may be administered in the form of suppositories for rectal administration. These compositions can be prepared by mixing a compound of this invention with a suitable non-irritating excipient which is solid at room temperature but liquid at the rectal temperature and therefore will melt in the rectum to release the active components. Such materials include, but are not limited to, cocoa butter, beeswax and polyethylene glycols.
[00197] The pharmaceutical compositions of this invention may be administered by nasal aerosol or inhalation. Such compositions are prepared according to techniques well-known in the art of pharmaceutical formulation and may be prepared as solutions in saline, employing benzyl alcohol or other suitable preservatives, absorption promoters to enhance bioavailability, fluorocarbons, and/or other solubilizing or dispersing agents known in the art.
[00198] Topical administration of the pharmaceutical compositions of this invention is especially useful when the desired treatment involves areas or organs readily accessible by topical application. For application topically to the skin, the pharmaceutical composition should be formulated with a suitable ointment containing the active components suspended or dissolved in a carrier. Carriers for topical administration of the compounds of this invention include, but are not limited to, mineral oil, liquid petroleum, white petroleum, propylene glycol, polyoxyethylene polyoxypropylene compound, emulsifying wax and water. Alternatively, the pharmaceutical composition can be formulated with a suitable lotion or cream containing the active compound suspended or dissolved in a carrier. Suitable carriers include, but are not limited to, mineral oil, sorbitan monostearate, polysorbate 60, cetyl esters wax, cetearyl alcohol, 2-octyldodecanol, benzyl alcohol and water. The pharmaceutical compositions of this invention may also be topically applied to the lower intestinal tract by rectal suppository formulation or in a suitable enema formulation. Topically-transdermal patches and iontophoretic administration are also included in this invention. [00199] Methods of treatment disclosed herein ay be employed in combination with or in addition to other therapies. In certain embodiments, the subject being treated is further administered one or more of chemotherapy, radiotherapy, targeted therapy, immunotherapy, and hormonal therapy.
[00200] Exemplary additional therapeutically active agents include, but are not limited to, small organic molecules such as drug compounds, e.g., compounds approved by the U.S. Food and Drug Administration (FDA) as provided in the Code of Federal Regulations (CFR), peptides, proteins, carbohydrates, monosaccharides, oligosaccharides, polysaccharides, nucleoproteins, mucoproteins, lipoproteins, synthetic polypeptides or proteins, small molecules linked to proteins, glycoproteins, steroids, nucleic acids, DNAs, RNAs, nucleotides, nucleosides, oligonucleotides, antisense oligonucleotides, lipids, hormones, vitamins and cells.
[00201] In certain embodiments, a compound of the invention may be administered in combination with endocrine therapy, e.g., agents such as letrozole, fulvestrant, tamoxifen, exemestane, or anastrozole.
[00202] In some embodiments, a compound of the invention may be administered in combination with a chemotherapeutic agent, e.g., docetaxel, paclitaxel, cisplatin, carboplatin, capecitabine, gemcitabine or vinorelbine. In other embodiments, a compound of the invention may be administered in combination with an anti-HER2 agent, e.g., trastuzumab or pertuzumab. [00203] In certain embodiments, the method disclosed herein is in combination with one or more of immune check point blockade, co-signaling of T cells, and tumor targeting antibody therapies.
[00204] In certain embodiments, the method further comprises administering a chemotherapeutic agent to the subject.
[00205] In certain embodiments, the method further comprises administering a radiotherapy to the subject. In certain embodiments, the method further comprises administering a targeted therapy to the subject. In certain embodiments, the method further comprises administering an immunotherapy to the subject. In certain embodiments, the method further comprises administering hormonal therapy to the subject.
[00206] As used herein, the term "chemotherapeutic agent" refers to a chemical compound useful in the treatment of cancer. Examples of chemotherapeutic agents include Erlotinib (TARCEVA®, Genentech/OSI Pharm.), Bortezomib (VELCADE®, Millennium Pharm.), Fulvestrant (FASLODEX®, AstraZeneca), Sutent (SU1 1248, Pfizer), Letrozole (FEMARA®, Novartis), Imatinib mesylate (GLEEVEC®, Novartis), PTK787/ZK 222584 (Novartis), Oxaliplatin (Eloxatin®, Sanofi), 5-FU (5 -fluorouracil), Leucovorin, Rapamycin (Sirolimus, RAPAMUNE®, Wyeth), Lapatinib (TYKERB®, GSK572016, Glaxo Smith Kline), Lonafarnib (SCH 66336), Sorafenib (BAY43-9006, Bayer Labs), and Gefitinib (IRESSA®, AstraZeneca), AG1478, AG1571 (SU 5271; Sugen), alkylating agents such as thiotepa and CYEOXAN® cyclosphosphamide; alkyl sulfonates such as busulfan, improsulfan and piposulfan; aziridines such as benzodopa, carboquone, meturedopa, and uredopa; ethylenimines and methylamelamines including altretamine, triethylenemelamine, tri ethylenephosphorami de, triethylenethiophosphoramide and trimethylomelamine; acetogenins (especially bullatacin and bullatacinone); a camptothecin (including the synthetic analog topotecan); bryostatin; callystatin; CC-1065 (including its adozelesin, carzelesin and bizelesin synthetic analogs); cryptophy cins (particularly cryptophycin 1 and cryptophycin 8); dolastatin; duocarmycin (including the synthetic analogs, KW-2189 and CB1-TM1); eleutherobin; pancratistatin; a sarcodictyin; spongistatin; nitrogen mustards such as chlorambucil, chlornaphazine, chlorophosphamide, estramustine, ifosfamide, mechlorethamine, mechlorethamine oxide hydrochloride, melphalan, novembichin, phenesterine, prednimustine, trofosfamide, uracil mustard; nitrosureas such as carmustine, chlorozotocin, fotemustine, lomustine, nimustine, and ranimnustine; antibiotics such as the enediyne antibiotics (e.g., calicheamicin, especially calicheamicin gammall and calicheamicin omegall (Angew Chem. Tntl. Ed. Engl. (1994) 33: 183-186); dynemicin, including dynemicin A; bisphosphonates, such as clodronate; an esperamicin; as well as neocarzinostatin chromophore and related chromoprotein enediyne antibiotic chromophores), aclacinomysins, actinomycin, authramycin, azaserine, bleomycins, cactinomycin, carabicin, caminomycin, carzinophilin, chromomycinis, dactinomycin, daunorubicin, detorubicin, 6- diazo-5-oxo-L- norleucine, ADRIAMYCIN® (doxorubicin), morpholino-doxorubicin, cyanomorpholinodoxorubicin, 2-pyrrolino-doxorubicin and deoxydoxorubicin), epirubicin, esonibicin, idarubicin, marcellomycin, mitomycins such as mitomycin C, mycophenolic acid, nogalamycin, olivomycins, peplomycin, porfiromycin, puromycin, quelamycin, rodorubicin, streptonigrin, streptozocin, tubercidin, ubenimex, zinostatin, zorubicin; anti-metabolites such as methotrexate and 5 -fluorouracil (5-FU); folic acid analogs such as denopterin, methotrexate, pteropterin, trimetrexate; purine analogs such as fludarabine, 6- mercaptopurine, thiamniprine, thioguanine; pyrimidine analogs such as ancitabine, azacitidine, 6-azauridine, carmofur, cytarabine, dideoxyuridine, doxifluridine, enocitabine, floxuridine; androgens such as calusterone, dromostanolone propionate, epitiostanol, mepitiostane, testolactone; anti-adrenals such as aminoglutethimide, mitotane, trilostane; folic acid replenisher such as frolinic acid; aceglatone; aldophosphamide glycoside; aminolevulinic acid; eniluracil; amsacrine; bestrabucil; bisantrene; edatraxate; defofamine; demecolcine; diaziquone; elformithine; elliptinium acetate; an epothilone; etoglucid; gallium nitrate; hydroxyurea; lentinan; lonidainine; maytansinoids such as maytansine and ansamitocins; mitoguazone; mitoxantrone; mopidanmol; nitraerine; pentostatin; phenamet; pirarubicin; losoxantrone; podophyllinic acid; 2-ethylhydrazide; procarbazine; PSK® polysaccharide complex (JHS Natural Products, Eugene, Oreg.); razoxane; rhizoxin; sizofuran; spirogermanium; tenuazonic acid; triaziquone; 2,2',2"-trichlorotriethylamine; trichothecenes (especially T-2 toxin, verracurin A, roridin A and anguidine); urethan; vindesine; dacarbazine; mannomustine; mitobronitol; mitolactol; pipobroman; gacytosine; arabinoside ("Ara-C"); cyclophosphamide; thiotepa; taxoids, e.g., TAXOL® (paclitaxel; Bristol-Myers Squibb Oncology, Princeton, N.J.), ABRAXANE® (Cremophor-free), albumin-engineered nanoparticle formulations of paclitaxel (American Pharmaceutical Partners, Schaumberg, 111.), and TAXOTERE® (doxetaxel; Rhone-Poulenc Rorer, Antony, France); chloranmbucil; GEMZAR® (gemcitabine); 6-thioguanine; mercaptopurine; methotrexate; platinum analogs such as cisplatin and carboplatin; vinblastine; etoposide (VP- 16); ifosfamide; mitoxantrone; vincristine;
NAVELBTNE® (vinorelbine); novantrone; teniposide; edatrexate; daunomycin; aminopterin; capecitabine (XELODA®); ibandronate; CPT-11; topoisomerase inhibitor RFS 2000; difluoromethylomithine (DMFO); retinoids such as retinoic acid; and pharmaceutically acceptable salts, acids and derivatives of any of the above.
[00207] Examples of the second (or further) agent or therapy may include, but are not limited to, immunotherapies (e.g. PD-1 inhibitors (pembrolizumab, nivolumab, cemiplimab), PD-L1 inhibitors (atezolizumab, avelumab, durvalumab), CTLA4 antagonist, cell signal transduction inhibitors (e.g., imatinib, gefitinib, bortezomib, erlotinib, sorafenib, sunitinib, dasatinib, vorinostat, lapatinib, temsirolimus, nilotinib, everolimus, pazopanib, trastuzumab, bevacizumab, cetuximab, ranibizumab, pegaptanib, panitumumab and the like), mitosis inhibitors (e.g., paclitaxel, vincristine, vinblastine and the like), alkylating agents (e.g., cisplatin, cyclophosphamide, chromabucil, carmustine and the like), anti -metabolites (e.g., methotrexate, 5-FU and the like), intercalating anticancer agents, (e.g., actinomycin, anthracycline, bleomycin, mitomycin-C and the like), topoisomerase inhibitors (e.g, irinotecan, topotecan, teniposide and the like), immunotherapic agents (e.g., interleukin, interferon and the like) and antihormonal agents (e.g., tamoxifen, raloxifene and the like).
[00208] Certain compounds of the present invention may exist in particular geometric or stereoisomeric forms. The present invention contemplates all such compounds, including cisand Zra/rs-i somers, R- and 5-enantiomers, diastereomers, (D)-isomers, (L)-isomers, the racemic mixtures thereof, and other mixtures thereof, as falling within the scope of the invention. Additional asymmetric carbon atoms may be present in a substituent such as an alkyl group. All such isomers, as well as mixtures thereof, are intended to be included in this invention.
[00209] Isomeric mixtures containing any of a variety of isomer ratios may be utilized in accordance with the present invention. For example, where only two isomers are combined, mixtures containing 50:50, 60:40, 70:30, 80:20, 90:10, 95:5, 96:4, 97:3, 98:2, 99: 1, or 100:0 isomer ratios are contemplated by the present invention. Those of ordinary skill in the art will readily appreciate that analogous ratios are contemplated for more complex isomer mixtures. [00210] If, for instance, a particular enantiomer of a compound of the present invention is desired, it may be prepared by asymmetric synthesis, or by derivation with a chiral auxiliary, where the resulting diastereomeric mixture is separated and the auxiliary group cleaved to provide the pure desired enantiomers. Alternatively, where the molecule contains a basic functional group, such as amino, or an acidic functional group, such as carboxyl, diastereomeric salts are formed with an appropriate optically-active acid or base, followed by resolution of the diastereomers thus formed by fractional crystallization or chromatographic methods well known in the art, and subsequent recovery of the pure enantiomers.
[00211] Isotopically-labeled compounds are also within the scope of the present disclosure. As used herein, an "isotopically-labeled compound" refers to a presently disclosed compound including pharmaceutical salts and prodrugs thereof, each as described herein, in which one or more atoms are replaced by an atom having an atomic mass or mass number different from the atomic mass or mass number usually found in nature. Examples of isotopes that can be incorporated into compounds presently disclosed include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorous, fluorine and chlorine, such as 2H, 3H, 13C, 14C, 15N, 18O, 170, 31P, 32P, 35S, 18F, and 36C1, respectively. [00212] By isotopically-labeling the presently disclosed compounds, the compounds may be useful in drug and/or substrate tissue distribution assays. Tritiated (3H) and carbon- 14 (14C) labeled compounds are particularly preferred for their ease of preparation and detectability. Further, substitution with heavier isotopes such as deuterium (2H) can afford certain therapeutic advantages resulting from greater metabolic stability, for example increased in vivo half-life or reduced dosage requirements and, hence, may be preferred in some circumstances. Isotopically labeled compounds presently disclosed, including pharmaceutical salts, esters, and prodrugs thereof, can be prepared by any means known in the art.
[00213] Further, substitution of normally abundant hydrogen (1H) with heavier isotopes such as deuterium can afford certain therapeutic advantages, e.g., resulting from improved absorption, distribution, metabolism and/or excretion (ADME) properties, creating drugs with improved efficacy, safety, and/or tolerability. Benefits may also be obtained from replacement of normally abundant 12C with 13C. (See, WO 2007/005643, WO 2007/005644, WO 2007/016361, and WO 2007/016431.)
[00214] Stereoisomers (e.g., cis and trans isomers) and all optical isomers of a presently disclosed compound (e.g., R and S enantiomers), as well as racemic, diastereomeric and other mixtures of such isomers are within the scope of the present disclosure.
[00215] Compounds of the present invention are, subsequent to their preparation, preferably isolated and purified to obtain a composition containing an amount by weight equal to or greater than 95% (“substantially pure”), which is then used or formulated as described herein. Tn certain embodiments, the compounds of the present invention are more than 99% pure.
[00216] Solvates and polymorphs of the compounds of the invention are also contemplated herein. Solvates of the compounds of the present invention include, for example, hydrates. [00217] Any appropriate route of administration can be employed, for example, parenteral, intravenous, subcutaneous, intramuscular, intraventricular, intracorporeal, intraperitoneal, rectal, or oral administration. Most suitable means of administration for a particular patient will depend on the nature and severity of the disease or condition being treated or the nature of the therapy being used and on the nature of the active compound.
[00218] Compositions for parenteral injection comprise pharmaceutically-acceptable sterile aqueous or nonaqueous solutions, dispersions, suspensions or emulsions, as well as sterile powders for reconstitution into sterile injectable solutions or dispersions just prior to use. Examples of suitable aqueous and nonaqueous carriers, diluents, solvents or vehicles include water, ethanol, polyols (such as glycerol, propylene glycol, polyethylene glycol, and the like), carboxymethylcellulose and suitable mixtures thereof, vegetable oils (such as olive oil), and injectable organic esters such as ethyl oleate. Proper fluidity may be maintained, for example, by the use of coating materials such as lecithin, by the maintenance of the required particle size in the case of dispersions, and by the use of surfactants.
[00219] These compositions can also contain adjuvants such as preservative, wetting agents, emulsifying agents, and dispersing agents. Prevention of the action of microorganisms may be ensured by the inclusion of various antibacterial and antifungal agents, for example, paragen, chlorobutanol, phenol sorbic acid, and the like. It may also be desirable to include isotonic agents such as sugars, sodium chloride, and the like. Prolonged absorption of the injectable pharmaceutical form may be brought about by the inclusion of agents which delay absorption, such as aluminum monostearate and gelatin.
[00220] Compounds of the present invention may also be administered in the form of liposomes. As is known in the art, liposomes are generally derived from phospholipids or other lipid substances. Liposomes are formed by mono- or multi-lamellar hydrated liquid crystals that are dispersed in an aqueous medium. Any non-toxic, physiologically-acceptable and metabolizable lipid capable of forming liposomes can be used. The present compositions in liposome form can contain, in addition to a compound of the present invention, stabilizers, preservatives, excipients, and the like. The preferred lipids are the phospholipids and the phosphatidyl cholines (lecithins), both natural and synthetic. Methods to form liposomes are known in the art. See, for example, Prescott, Ed., Methods in Cell Biology, Volume XIV, Academic Press, New York, N.Y. (1976), p. 33 et seq.
[00221] Total daily dose of the compositions of the invention to be administered to a human or other mammal host in single or divided doses may be in amounts, for example, from 0.0001 to 300 mg/kg body weight daily and more usually 1 to 300 mg/kg body weight. The dose, from 0.0001 to 300 mg/kg body, may be given twice a day.
[00222] Materials, compositions, and components disclosed herein can be used for, can be used in conjunction with, can be used in preparation for, or are products of the disclosed methods and compositions. It is understood that when combinations, subsets, interactions, groups, etc. of these materials are disclosed that while specific reference of each various individual and collective combinations and permutations of these compounds may not be explicitly disclosed, each is specifically contemplated and described herein. For example, if a method is disclosed and discussed and a number of modifications that can be made to a number of molecules including in the method are discussed, each and every combination and permutation of the method, and the modifications that are possible are specifically contemplated unless specifically indicated to the contrary. Likewise, any subset or combination of these is also specifically contemplated and disclosed. This concept applies to all aspects of this disclosure including, but not limited to, steps in methods using the disclosed compositions. Thus, if there are a variety of additional steps that can be performed, it is understood that each of these additional steps can be performed with any specific method steps or combination of method steps of the disclosed methods, and that each such combination or subset of combinations is specifically contemplated and should be considered disclosed.
Examples
[00223] The following examples are given for the purpose of illustrating the invention, but not for limiting the scope or spirit of the invention.
[00224] Compounds of the invention, including those specifically disclosed herein above and herein below, may be prepared as described in the following schemes. Although the present invention has been described in detail with preferred embodiments, those of ordinary skill in the art should understand that modifications, variations, and equivalent replacements made to the present invention within the scope of the present invention belong to the protection of the present invention.
List of Abbreviations and acryonums:
Ac = Acetyl
AcO = Acetate
AC2O = Acetic anhydride
AIBN = a,a'-Azoisobyronitrile
All = Allyl
Alloc = Allyloxycarbonyl
Am = Amyl (Pentyl) Ar = Aryl
EhPi = bis(pinacolato)diboron
9-BBN = 9-Borabicyclononane
BINAP = 2,2'-Bis(diphenylphosphino)-l,r-binaphthyl
Bn = Benzyl
Boc = tert-Butoxycarbonyl
BOP = Bis(2-oxo-3-oxazolidinyl)phosphine
Bu or n-Bu = n-Butyl s-Bu or sBu = sec-Butyl t-Bu or tBu = tert-Butyl
BuOH = Butanol
Bz = Benzoyl
Bzl = Benzyl
CAN = Ceric ammonium nitrate cataCXium A Pd G3 = mesylate [(di(l-adamantyl)-n-butylphosphine)-2-
(2’ -amino- 1 , 1 ’biphenyl)]palladium(II)
CBS = Corey -Bashki-Shibat
Cbz = Benzyloxycarbonyl
CbzCl = Benzyl chloroformate ox
Cod = Cyclooctadiene
Cp = Cyclopentadienyl
CPhos = 2-Dicyclohexylphosphino-2',6'-bis(jV,7V-dimethylamino)biphenyl
CSA = Camphorsulphonic acid
DABCO = 1,4-Diazabicyclo[2.2.2]octane
DAST = Diethylaminosulphur trifluoride dba = Dibenzylideneacetone
DBU = l,8-Diazabyciclo[5.4.0]undec-7-ene
DCC = 1,3 -Dicyclohexylcarbodiimide
DCM = Dichloromethane
DDQ = 2,3-Dichloro-5,6-dicyano-l,4-benzoquinone
DEAD = Diethyl azodi carb oxy late DHP = Dihydropiran
DHQD = Dihydroquinidine
DIBAL = Diisobutylaluminium hydride
DIC = Diisopropylcarbodiimide
DIPEA = Diisopropylethylamine
DMA = N,N-Dimethylacetamide
DMAC = N,N-Dimethylacetamide
DMAP = 4-Dimethylaminopyridine
DME = 1,2-Dimethoxy ethane
DMF = N,N-Dimethylformamide
DMP = Dess-Martin periodinane
DMPU = l,3-Dimethyl-3,4,5,6-tetrahydro-2(lH)-pirimidone
DMS = Dimethylsulphide
DMSO = Dimethylsulphoxide
DPA = Diisopropylamine
DPPA = Diphenylphosphoryl azide
Ddpb = l,4-bis(diphenylphosphino)butane
Dppe = l,2-bis(diphenylphosphino)ethane
Dppf = 1 ,2-bi s(diphenylphosphino)ferrocene dppp = l ,3-bis(diphenylphosphino)propane
Dtbbpy = 4, 4’ -di -tert-butyl-2, 2’ -dipyridyl
EDC = l-Ethyl-3-(3-dimethylaminopropy)carbodiimide
EDCI = l-Ethyl-3-(3-dimethylaminopropy)carbodiimide hydrochloride
Eq = equivalent
ESI or ES = Electrospray ionization
Et = ethyl
Et2O = Diethyl ether
EtOAc = Ethyl acetate
FMOC = 9-Fluorenylmethoxycarbonyl h = hour H A TU = 1 - [bi s (di m ethy 1 am i n o)m ethyl en e] - 1 H- 1 , 2, 3 -tri azol o [4, 5 - b]pyridinium 3-oxide hexafluorophosphate
HMDS = Hexamethyldisilazane
HMPA = Hexamethylphosphoramide
HOAt = 7-Aza-l-hydroxybenzotriazole
HOBt = 1 -Hydroxybenzotriazole
HPLC = high pressure liquid chromatography
IPA = Isopropyl alcohol
Im = Imidazole
KHMDS = Potassium bis(trimethylsilyl)amide
KO Ac = Potassium acetate
LAH = Lithium aluminium hydride
LDA = Lithium diisopropylamide
LHMDS = Lithium bis(trimethylsilyl)amide
MCPBA = meta-chloroperoxybenzoic acid
Me = Methyl
MeCN = Acetonitrile
MeOH = Methanol
MOM = Methoxymethyl
Mg = magnesium
MS = Molecular sieves
Ms = Methanesulphonyl
MTBE = Methyl tert-butyl ether m/z = mass divided by charge
NaHMDS = Sodium bis(trimethylsilyl)amide
NBS = N-Bromosuccinimide
NCS = N-Chlorosuccinimide
NIS = N-Iodosuccinimide
NMM = N-Methylmorpholine
NMO = N-Methylmorpholine-N-oxide
NMP = N-Methylpyrrolidone NMR = Nuclear magnetic resonance
Ns = p-Nitrophenyl sulphonyl
Pd(dppf)Q2 = [l,l’-bis(diphenylphosphino)ferrocene]dichloropalladium
Pd(PPh3)4 = tetrakis(triphenylphosphine)palladium
PDC = Pyridinium dichlorochromate
PCC = Pyridinium chlorochromate
Ph = Phenyl
PhMe = toluene
Piv = Pivaloyl, 2,2-dimethylacetyl
PMB = p-Methoxybenzyl
PPA = Polyphosphoric acid
PPTS = Pyridinium p-toluensulphonate n-Pr = n-Propyl
Pr = Propyl i-Pr or iPr = iso-propilo
PTC = Phase transfer catalyst
PTS A = p-Toluenesulphonic acid
Pv = Pivaloyl, 2,2-dimethylacetyl
Py = Pyridine rac. = racemic
Red-Al® = Sodium bis(2-methoxyethoxy)aluminium hydride
RT = room temperature
RuPhos = 2-Dicyclohexylphosphino-2',6'-diisopropoxybiphenyl
Sat. = saturated
SFC = supercritical fluid chromatography
SEM = 2-(Trimethylsilyl)ethoxymethyl
SPhos = 2-Dicyclohexylphosphino-2',6'-dimethoxybiphenyl
TBAF = Tetrabutylammonium fluoride
TBDMS = tert-Butyldimethylsilyl
TBDPS = tert-Butyldiphenylsilyl
TBHP = tert-Butylhydroperoxyde TBS = tert-Butyl di methyl silyl
TEA = Tri ethylamine
TES = Triethylsilyl
Tf = Trifluoromethanesulfonyl
TfO = Trifluoromethanesulfonate
Tf2O = Trifluoromethanesulfonyl anhydride
TfOH = Trifluoromethanesulfonic acid
TFA = Trifluoroacetic acid
TFAA = Trifluoroacetic anhydride
Thexyl = 2,3 -dimethyl-2 -butyl
THF = Tetrahydrofurane
THP = Tetrahydropyranyl
TIPS = Triisopropylsilyl
TLC = Thin layer chromatography
TMEDA = N,N,N',N'-Tetramethylethylendiamine
TMG = Tetramethylguanidine
TMS = Trimethylsilyl
Tol = p-Toluyl
TPAP = Tetra-n-propylammonium perruthenate
TPS = Tripropylsilyl
Tr = Trityl, triphenylmethyl
Troc = 2,2,2-Trichloroethoxycarbonyl
Trt = Trityl, triphenylmethyl
Ts = p-Toluenesulphonyl p-TsOH = p-Toluenesulphonic acid
UV = ultraviolet
XantPhos = 4,5-Bis(diphenylphosphino)-9,9-dimethylxanthene
XPhos = 2-Dicyclohexylphosphino-2',4',6'-triisopropylbiphenyl
Z = Benzyloxycarbony
General Synthetic Schemes Scheme 1 :
Figure imgf000068_0001
[00225] Scheme 1 illustrates one procedure for preparing the compounds of disclosure using metal-catalyzed reaction to prepare the substituted quinazoline. Displacement of 4-chloro group of 1,3 -di substituted quinazoline with a protected piperazine or amine provides 2-chloro-4-amine- substituted quinazoline intermediate. Then the second chloro group was displaced with an appropriate alcohol to fetch an ether substituted quinazoline intermediate. This intermediate could be utilized in two different ways to prepare the final target compounds. The first method is to install bromine atom at C7 position after deprotonation with strong base such as BuLi or LDA. Pd-catalyzed Suzuki reaction will be applied to couple a suitable aryl boronic acid or ester followed by the deprotection of all the protecting group to yield the final product. The second method is to apply a zincate to deprotonate C7 to form an aromatic zinc reagent, then couple with an appropriate aryl halide to form C7-aryl substituted quinazolines. Final deprotection yields the desired target compounds.
Scheme 2:
Figure imgf000069_0001
[00226] Scheme 2 illustrates the other procedure for preparing the compounds of disclosure by using C7 brominated amino benzoic acid as starting material. 2-Amino benzoic acid reacts with chlorosulfonyl isocyanate and provides 2-thiol-3 -hydroxyl quinazoline. After methylation of thiol, 4-hydroxyl group was transformed to 4-chloride. Displacement of 4-chloro group with a protected piperazine or amine provides 4-amine-2 -thiol quinazoline intermediate. Then some functional group transformation can be carried out at C6 and more reactive C5-fluoro was displaced with an appropriate alcohol or other nucleophile. This intermediate was coupled to aryl boronic acid or ester by Pd-catalyzed Suzuki reaction followed by the deprotection of all the protecting group to yield the final target compounds.
Intermediate Syntheses:
Intermediate 1:
2,4-dichloro-5,6,8-trifluoroquinazoline
Figure imgf000069_0002
Synthetic scheme:
Figure imgf000070_0001
Step 1: Synthesis of 3,4,6-trifluoro-2-iodoaniline
Figure imgf000070_0002
[00227] To a solution of 2,4,5- trifluoroaniline (5.0 g, 34.0 mmol, 1.0 eq) in dioxane (50 mL) was added solution of iodine (4.32 g, 17.00 mmol, 0.5 eq) in dioxane (10 mL), followed by a solution of NaIO3 (5.98 g, 34.0 mmol, 1.0 eq) in water (10 mL). The mixture was heated at 70 °C for 15 h. The mixture was diluted with water (40 mL) and extracted with DCM (50 mL x 3). The organic layers were washed with saturated NazSO3 solution (50 mL), brine (50 mL), dried over NazSO4, filtered, and concentrated under reduced pressure to give a crude product, which was purified by silica gel column chromatography (petroleum ether: EtOAc = 10: 1) to afford 3,4,6- trifluoro-2-iodoaniline (8.0 g, 86.2%) as a white solid. 'H NMR (300 MHz, CDCL): 8 6.98 (ddd, J= 10.5, 9.6, 7.2 Hz, 1H), 4.10 (s, 2H).
Step 2: Synthesis of methyl 2-amino-3,5,6-trifluorobenzoate
Figure imgf000070_0003
[00228] To a solution of 3,4,6-trifluoro-2-iodoaniline (1.0 g, 3.66 mmol, 1.0 eq) in MeOH (10 mL) was added TEA (1.10 g, 10.99 mmol, 3.0 eq) and Pd(dppf)Cl3 (268 mg, 0.37 mmol, 0.1 eq). The mixture was stirred at 80 °C for 15 h under 1.5 MPa CO. The mixture was filtered, and the filtrate was concentrated to give a crude product, which was purified by silica gel column chromatography (petroleum ether: EtOAc = 5: 1) to afford methyl 2-amino-3,5,6- trifluorobenzoate (700 mg, 93.2%) as a white solid. [00229]1H NMR (300 MHz, CDCl3): 5 7.04 (m, 1H), 5 56 (s, 2H), 3.94 (s, 3H). LCMS: m/z
206.1 (M+H+).
Step 3: Synthesis of 5,6,8-trifluoroquinazoline-2,4-diol
Figure imgf000071_0001
[00230] To a solution of methyl 2-amino-3,5,6-trifluorobenzoate (630 mg, 3.09 mmol, 1.0 eq) in THF (8 mL) was added 2,2,2-trichloroacetyl isocyanate (875 mg, 4.65 mmol, 1.5 eq). The mixture was stirred at room temperature for 10 min. The reaction mixture was concentrated under reduced pressure to give an intermediate.
[00231] To a solution of above intermediate in MeOH (30 mL) was added NH3 in MeOH (7 M, 1.15 mL, 8.03 mmol, 2.6 eq). The mixture was stirred at room temperature for 1 h. The reaction mixture was concentrated under reduced pressure to give the crude product, 5,6,8- trifluoroquinazoline-2,4-diol (830 mg) as a white solid. LCMS: m/z 217.1 (M+H+).
Step 4: Synthesis of 2,4-dichloro-5,6,8-trifluoroquinazoline
Figure imgf000071_0002
[00232] To a solution of 5,6,8-trifluoroquinazoline-2,4-diol (450 mg, 1.84 mmol, 1.0 eq) in POCl3 (6.5 g, 42 77 mmol, 23.2 eq) was added D1EA (1.19 g, 9.22 mmol, 5.0 eq). The mixture was stirred at 90 °C for 15 h under nitrogen atmosphere. The reaction mixture was concentrated under reduced pressure to give a crude product, which was purified by silica gel column chromatography (petroleum ether: EtOAc = 20: 1) to afford 2,4-dichloro-5,6,8- trifluoroquinazoline (300 mg, 64.6% for 2 steps) as a white solid. 1H NMR (300 MHz, CDCl3): 8 7.69 - 7.61 (m, 1H).
Intermediate 2:
2,4-dichloro-6,8-difluoro-5-methylquinazoline
Figure imgf000072_0001
Step 1: Synthesis of l,5-difluoro-2-methyl-4-nitrobenzene
Figure imgf000072_0002
[00233] 2,4-difluoro-l -methylbenzene (20.0 g, 156.1 mmol, 1.0 eq) was added slowly in portion to H2SO4 (120 mL) at room temperature, then cooled down to -10 °C, HNO3 (9.84 g, 171.7 mmol, 1.1 eq) was added dropwise. The mixture was stirred at the same temperature for 2 h and poured into ice. The precipitate solid was filtered and dried to give crude l,5-difluoro-2- methyl-4-nitrobenzene (21.0 g, 77.8%) as a yellow solid, which was used for the next step without further purification. 1H N R (400 MHz, CDCl3): 5 7.99 (t, J= 8.0 Hz, 1H), 6.98 (t, J = 92 Hz, 1H), 2.32 (s, 3H).
Step 2: Synthesis of 2,4-difluoro-5-methylaniline
Figure imgf000072_0003
[00234] A mixture of l,5-difluoro-2-methyl-4-nitrobenzene (5.0 g, 28.9 mmol) and Pd/C (10%, 1.7 g) in MeOH (50 mL) was hydrogenated with a balloon of hydrogen at room temperature for 3 h. HPLC showed the reaction was completed. The mixture was filtered and concentrated to give crude product, 2,4-difluoro-5-methylaniline (3.1 g, 75.6%) as a gray solid, which was used for next step without further purification. 1H NMR (400 MHz, DMSO-cA): 8 6.92 (t, J= 10.0 Hz, 1H), 6.17 (t, J= 8.8 Hz, 1H), 4.87 (brs, 1H), 2.08 (s, 3H). LCMS: m/z 144.1 (M+H+).
Step 3: Synthesis of (E)-N-(2,4-difluoro-5-methylphenyl)-2-(hydroxyimino)acetamide
Figure imgf000073_0001
[00235] To a solution of NaiSCf (22.2 g, 156.5 mmol, 8.0 eq) and hydroxylamine hydrochloride (4.8 g, 68.5 mmol, 3.5 eq) in H2O (84 mL) was added 2,2,2-trichloroethane-l,l- diol (4.9 g, 29.3 mmol, 1.5 eq). The mixture was stirred at room temperature for a few minutes, then added at room temperature a solution prepared by the addition of con. HC1 (2.2 mL) to 2,4- difluoro-5-methylaniline (2.8 g, 19.6 mmol, 1.0 eq) in EtOH (8.4 mL) and H2O (5.6 mL). The reaction was heated to 60 °C and stirred for overnight. HPLC showed the reaction went to completion. The mixture was cooled to room temperature, filtered and concentrated to give crude product (E)-N-(2,4-difluoro-5-methylphenyl)-2-(hydroxyimino)acetamide (4.0 g, 95.5%) as a gray solid, which was used for next step without any further purification. LCMS: m/z 213.1 (M- H-).
Step 4: Synthesis of 5, 7-difluoro-4-methylindoline-2, 3-dione
Figure imgf000073_0002
[00236] (E)-N-(2,4-difluoro-5-methylphenyl)-2-(hydroxyimino)acetamide (3.0 g, 15.2 mmol, 1.0 eq) was added to concentrated H2SO4 (98%, 30 mL) at 60 °C. The mixture was heated to 90 °C and stirred for 1 h. After cooled to room temperature, the reaction mixture was added water (300 mL), then the solid was collected by filtration and washed with water to provide 5,7- difluoro-4-methylindoline-2, 3-dione (4.2 g, 38.0%) as a red solid. LCMS: m/z 196.1 (M-H‘). Step 5: Synthesis of 2-amino-3,5-difluoro-6-methylbenzoic acid
Figure imgf000074_0001
[00237] To a solution of 5, 7-difluoro-4-methylindoline-2, 3-dione (1.0 g, 5.3 mmol, 1.0 eq) in aqueous NaOH (24.0 mL, 47.9 mmol, 9.0 eq, 2M) was added H2O2 (3.2 g, 26.6 mmol, 5.0 eq, 30%). The mixture was stirred at room temperature for 30 min, then quenched by saturated Na2SO3 solution. The aqueous layer was extracted with EtOAc (30 mL x 3) to remove neutral impurities. The aqueous phase was acidified with IM HC1 to pH 4 and extracted with EtOAc (30 mL x 3). The combined organic layers were dried over anhydrous magnesium sulfate, filtered, and concentrated to give crude product 2-amino-3,5-difluoro-6-methylbenzoic acid (600.0 mg, 63.2%) as a brow solid. XH NMR (300 MHz, DMSO-^): 3 8.15 (brs, 1H), 7.26-7.19 (m, 1H), 2.21 (s, 3H). LCMS: m/z 188.1 (M+H+).
Step 6: Synthesis of 6,8-difluoro-5-methylquinazoline-2,4-diol
Figure imgf000074_0002
[00238] To a solution of 2-amino-3,5-difluoro-6-methylbenzoic acid (800.0 mg, 4.5 mmol, 1.0 eq) in DCM (16 mL) was added chlorosulfonyl isocyanate (1.4 g, 10.0 mmol, 2.3 eq). The mixture was stirred at room temperature for 4 h. HPLC show the reaction went to completion. The solution was concentrated, then was added 6 N HC1 (24 mL). The mixture was stirred at 100 °C overnight, then cooled to room temperature, filtered, and concentrated to give crude product, 6,8-difluoro-5-methylquinazoline-2,4-diol (700.0 mg, 73.5%) as a gray solid. 1H NMR (300 MHz, DMSO-t/g): 8 11.35 (brs, 1H), 11.13 (brs, 1H), 7.68 (t, J= 10.2 Hz, 1H), 2.53 (s, 3H). LCMS: m/z 213.1 (M+H+).
Step 7: Synthesis of 2,4-dichloro-6,8-difluoro-5-methylquinazoline
Figure imgf000074_0003
[00239] A solution of 6,8-difluoro-5-methylquinazoline-2,4-diol (456 mg, 2.2 mmol, 1.0 eq) in POCL (4.5 mL) was added DIEA (1.1 g, 8.6 mmol, 4.0 eq) and stirred at 90 °C for 3 h under nitrogen atmosphere. The mixture was concentrated to give the crude product, which was purified by silica gel column chromatography (petroleum ether/EtOAc = 60: 1—10: l) to provide the desired product, 2,4-dichloro-6,8-difluoro-5-methylquinazoline (190 mg, 35.5%) as a white solid.1H NMR (300 MHz, CDCl3): 8 7.49 (t, J= 9.0 Hz, 1H), 2.90-2.82 (m, 3H).
Intermediate 3:
2,4-dichloro-8-fluoro-5-methylquinazoline-6-carbonitrile
Figure imgf000075_0001
Synthetic scheme:
Figure imgf000075_0002
Step 1: Synthesis of 2-amino-4-bromo-3-fluoro-5-iodo-6-methylbenzoic acid
Figure imgf000075_0003
[00240] To a solution of 2-amino-4-bromo-3-fluoro-6-methylbenzoic acid (1.5 g, 6.07 mmol, 1.0 eq) in DCM (15.00 mL) was added NIS (2.04 g, 9.10 mmol, 1.5 eq). The reaction was stirred at room temperature for 15 h, then diluted with DCM (30 mL) and water (10 mL). The aqueous layer was separated and extracted with DCM (20 mL x 3). The combined organic layers were washed with brine (20 mb), dried over NajSCh and evaporated to dryness. The crude product was purified by silica gel column chromatography (petroleum ether: EtOAc = 1 : 1) to afford the desired product, 2-amino-4-bromo-3-fluoro-5-iodo-6-methylbenzoic acid (1.3 g, 57.5%) as a yellow solid. 1H NMR (400 MHz, CDCl3): 6 2.74 (s, 3H). LCMS: m/z 373.9, 375.9 (M+H+).
Step 2 Synthesis of 7-bromo-8-fluoro-6-iodo-5-methylquinazoline-2,4-diol
Figure imgf000076_0001
[00241] To a solution of 2-amino-4-bromo-3-fluoro-5-iodo-6-methylbenzoic acid (1.3 g, 3.48 mmol, 1.0 eq) in DCM (13 mL) was added chlorosulfonyl isocyanate (1.15 g, 8.16 mmol, 2.3 eq) at 0 °C. The reaction mixture was stirred at room temperature for 15 h, then concentrated. The crude material was dissolved in 6 N HC1 (13 mL) and heated at 100 °C for 6 h. The reaction mixture was poured into ice-water and filtered. The filtrate was concentrated to give crude compound 7-bromo-8-fluoro-6-iodo-5-methylquinazoline-2,4-diol (1.0 g) as a yellow solid. ’H NMR (300 MHz, CDC13): d 1.50 (s, 3H). LCMS: 398.9, 400.8 (M+H+).
Step 3: Synthesis of 7-bromo-2,4-dichloro-8-fluoro-6-iodo-5-niethylquinazoline
Figure imgf000076_0002
[00242] To a solution of 7-bromo-8-fluoro-6-iodo-5-methylquinazoline-2,4-diol (1.0 g, 2.51 mmol, 1.0 eq) in POCl3 (5 mL) was added TEA (1.01 g, 10.0 mmol, 4.0 eq). The reaction mixture was stirred at 90 °C for 12 h, then concentrated to give the crude product, which was purified by silica gel column chromatography (petroleum ether: EtOAc = 50: l~20: 1) to provide the desired product, 7-bromo-2,4-dichloro-8-fluoro-6-iodo-5-methylquinazoline (1.1 g, crude) as a yellow solid.
Intermediate 4:
2,4,6-trichloro-8-fluoro-5-methylquinazoline
Figure imgf000077_0001
Step 1: Synthesis of tert-butyl (3-bromo-2-fluoro-5-methylphenyl) carbamate
Figure imgf000077_0002
[00243] To a solution of 3-bromo-2-fluoro-5-methylbenzoic acid (4.5 g, 19.3 mmol, 1.0 eq) in toluene and Z-BuOH (67.5 mL and 34.2 mL) were added DPPA (6.6 g, 24.1 mmol, 1.25 eq) and DIEA (3.0 g, 23.1 mmol, 1.2 eq). The reaction was stirred at 120 °C for 15 h. The mixture was cooled down and diluted EtOAc (40 mL) and water (10 mL). The aqueous layer was extracted with EtOAc (30 mL x 3). The combined organic layers were washed with brine (30 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (petroleum ether: EtOAc = 20: 1) to give the desired product, tert-butyl (3- bromo-2-fluoro-5-methylphenyl)carbamate (5.5 g, 94.8%) as a yellow solid.
Figure imgf000077_0003
NMR (400 MHz, CDCl3): 3 7.88 (d, J= 1.2 Hz, 1H), 6.98 (dd, J= 6.4, 2.0 Hz, 1H), 6.66 (brs, 1H), 2.29 (s, 3H), 1.52 (s, 9H).
Step 2: Synthesis of 3-bromo-2-fluoro-5-methylaniline
Figure imgf000078_0001
[00244] To a solution of tert-butyl (3-bromo-2-fluoro-5-methylphenyl)carbamate (3.2 g, 10.52 mmol, 1.0 eq) in zPrOH (32.00 mL) was added cone. HC1 (37%, 8.7 mL). The reaction was stirred at 60 °C for 2 h. The reaction system was concentrated and added H2O and IM NaOH to adjust the pH to 7-8. The mixture was added with EtOAc (30 mL) and water (10 mL). The aqueous layer was extracted with EtOAc (30 mL x 3). The combined organic layers were washed with brine (50 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 5: 1) to give the desired product, 3 -bromo-2-fluoro-5 -methylaniline (1.76 g, 83.7%) as a white solid. N1HMR (300 MHz, CDCl3): 3 6.69 (dd, J= 5.7, 0.9 Hz, 1H), 6.49 (dd, J= 7.5, 0.9 Hz, 1H), 3.64 (brs, 2H), 2.20 (s, 3H). LCMS: 204.0, 206.0 (M+H+).
Step 3: Synthesis of (E)-N-(3-bromo-2-fluoro-5-methylphenyl)-2-(hydroxyimino)acetamide
Figure imgf000078_0002
[00245] To a solution of 3-bromo-2-fluoro-5-methylaniline (6.08 g, 36.9 mmol, 1.5 eq) in H2O (124.0 mL) was added NH2OH HCI (6.0 g, 86.1 mmol, 3.5 eq) and Na2SO4 (27.9 g, 196.8 mmol, 8.0 eq), followed by the addition of a solution of compound 2,2,2-trichloroethane-l ,l -diol (5.0 g, 24.6 mmol, 1.0 eq) in EtOH (17.45 mL) and cone. HC1 (4.1 mL). The reaction was stirred at 60 °C for 15 h and concentrated to give the crude product, (E)-N-(3-bromo-2-fluoro-5- methylphenyl)-2-(hydroxyimino)acetamide (6.4 g, crude) as a yellow solid, which was used without further purification.
Step 4: Synthesis of 6-bromo-7-fluoro-4-methylindoline-2, 3-dione
Figure imgf000079_0001
[00246] (E)-N-(3-bromo-2-fluoro-5-methylphenyl)-2-(hydroxyimino)acetamide (6.4 g, 23.2 mmol, 1.0 eq) was added to concentrated H2SO4 (98%, 12.0 mL) in portion and stirred 90 °C for 1 h. The reaction mixture was poured into the ice water (20 mL). The precipitate formed was collected by filtration, washed with water (40 mL), dried in vacuo to give crude product, 6- bromo-7-fluoro-4-methylindoline-2, 3-dione (5.4 g, crude) as a yellow solid, which was used without further purification. 1H N R (400 MHz, CDCl3): 5 7.97 (brs, 1H), 7.12 (d, J = 5.6 Hz, 1H), 2.53 (s, 3H). LCMS: m/z 256.0, 258.0 (M-H+).
Step 5: Synthesis of 2-amino-4-bromo-3-fluoro-6-methylbenzoic acid
Figure imgf000079_0002
[00247] To a solution of 6-bromo-7-fluoro-4-methylindoline-2, 3-dione (5.4 g, 21.0 mmol, 1.0 eq) in aq. NaOH (86 mL) was added H2O2 (5 mL), the reaction mixture was stirred at 30°C for 3 h. The mixture was added with EtOAc (50 mL) and water (20 mL). The aqueous layer was separated and adjusted the pH to 3 by IN HC1. The precipitate formed was collected by filtration, washed with water (30 mL), dried in vacuo to give crude product, 2-amino-4-bromo-3-fluoro-6- methylbenzoic acid (3.1 g, crude) as a yellow solid. LCMS: m/z 248.0, 250.0 (M+H+).
Step 6: Synthesis of 2-amino-4-bromo-5-chloro-3-fluoro-6-methylbenzoic acid
Figure imgf000079_0003
[00248] To a solution of 2-amino-4-bromo-3-fluoro-6-methylbenzoic acid (1.0 g, 4.04 mmol, 1.0 eq) in con. H2SO4 (10.00 mL) was added NCS (1.8 g, 14.1 mmol, 3.5 eq). The reaction mixture was stirred at 80 °C for 15 h and poured into the ice water (10 mL). The precipitate formed was collected by filtration, washed with water (10 mL), dried in vacuo to give crude product, 2-amino-4-bromo-5-chloro-3-fluoro-6-methylbenzoic acid (1.2 g, crude) as a yellow solid, which was used directly. LCMS: m/z 562.9, 566.9 (2M+H+).
Step 7: Synthesis of 7-bromo-6-chloro-8-fluoro-5-methylquinazoline-2,4-diol
Figure imgf000080_0001
[00249] To a solution of 2-amino-4-bromo-5-chloro-3-fluoro-6-methylbenzoic acid (550 mg, 1.95 mmol, 1.0 eq) in DCM (6 mL) was added chlorosulfonyl isocyanate (670 mg, 4.70 mmol, 2.43 eq) at 0 °C. The reaction was stirred at room temperature for 15 h. The mixture was concentrated. The resulting residue was dissolved in 6N HC1 (5 mL). The reaction mixture was stirred at 100 °C for 6 h, then poured into the ice water (10 mL). The precipitate formed was collected by filtration, washed with water, dried in vacuo to give crude product, 7-bromo-6- chloro-8-fluoro-5-methylquinazoline-2,4-diol (220 mg, crude) as a yellow solid. LCMS: m/z 306.9, 308.9 (M+H+).
Step 8: Synthesis of 7-bromo-2,4,6-trichloro-8-fluoro-5-methylquinazoline
Figure imgf000080_0002
[00250] To a solution of 7-bromo-6-chloro-8-fluoro-5-methylquinazoline-2,4-diol (800 mg, 2.61 mmol, 1.0 eq) in POCL (5 mL) was added DIEA (1.34 g, 10.45 mmol, 4.0 eq). The reaction was stirred at 90 °C for 12 h. The mixture was concentrated to give the crude product. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 20: 1~5: 1) to give the crude product, 7-bromo-2,4,6-trichloro-8-fluoro-5-methylquinazoline (400 mg, 44.7%, six step yield) as a yellow solid, which was used without further purification.
Intermediate 5:
2,4-dichloro-6,8-difluoro-5-methoxyquinazoline
Figure imgf000081_0001
Step 1: Synthesis of l,5-difluoro-2-methoxy-4-nitrobenzene
Figure imgf000081_0002
[00251] To a solution of 2, 4-difluoro-5 -nitrophenol (10.0g, 57.1 mmol, 1.0 eq) in DMF (150 mL) cooled at 0 °C was added NaH (4.6 g, 115.0 mmol, 2.0 eq) and stirred at 0 °C for 30 min. To the reaction was added Mel (12.2 g, 86.0 mmol, 1.5 eq) dropwise. The mixture was stirred at room temperature for 3.5 h and poured into ice water (450 mL). The aqueous layer was extracted with EtOAc (150 mL x 3). The combined organic layers were washed with H2O (150 mL), brine (150 mL), dried over JSfeSCL and evaporated to dryness. The crude product was purified by silica gel column chromatography (petroleum ether / EtOAc = 7 / 3) to give the desired product, l,5-difluoro-2-methoxy-4-nitrobenzene (10.5 g, 97.2 %) as a yellow solid. 1H NMR (300 MHz, CDCL) 5 7.70 (t, J= 5.4 Hz, 1H), 7.07 (t, J= 7.8 Hz, 1H), 3.96 (s, 3H).
Step 2: Synthesis of 2,4-difluoro-5-methoxyaniline
Figure imgf000081_0003
[00252] To a solution of l,5-difluoro-2-methoxy-4-nitrobenzene (5.0 g, 5.3 mmol, 1.0 eq) in
EtOH (50 mL) was added Pd/C (1.0 g, 20% w/w) at room temperature. The reaction was stirred at 50 °C for 5 h under H2 atmosphere. The mixture was filtered, and the filtrate was concentrated to give crude product, which was purified by silica gel column chromatography (petroleum ether / EtOAc = 10 / 1) to afford the desired product, 2, 4-difluoro-5 -methoxy aniline (3.0 g, 71.4 %) as a white solid. 1H NMR (300 MHz, CDCl3) 5 6.81 (t, J= 10.5 Hz, 1H), 6.41 (t, J= 8.4 Hz, 1H), 3.82 (s, 3H), 3.56 (brs, 2H). LCMS: m/z 160.1 (M+H+).
Step 3: Synthesis of (E)-N-(2,4-difluoro-5-methoxyphenyl)-2-(hydroxyimino)acetamide
Figure imgf000082_0001
[00253] To a mixture of Na2SO4 (19.2 g, 135.7 mmol, 8.0 eq), NH2OH-HCI (4.1 g, 59.4 mmol, 3.5 eq), and 2, 2, 2-tri chloroethane- 1,1 -diol (4.2 g, 25.4 mmol, 1.5 eq) in H2O (81.0 mL) was added 2,4-difluoro-5-methoxyaniline (2.7 g, 17.0 mmol, 1.0 eq) in EtOH (8.1 mL), H2O (5.4 mL) and cone. HC1 (1.9 mL). The mixture was stirred at 60 °C for 15 h. The precipitate formed was collected by filtration, and washed with H2O, dried in vacuo to get crude product (E)-N-(2,4- difluoro-5-methoxyphenyl)-2-(hydroxyimino)acetamide (2.0 g, 51.3 %) as a brown solid, which was used directly without further purification. LCMS: m/z 231.1 (M+H +).
Step 4: Synthesis of 5, 7-difluoro-4-methoxyindoline-2, 3-dione
Figure imgf000082_0002
[00254] (E)-N-(2,4-difluoro-5-methoxyphenyl)-2-(hydroxyimino) acetamide (2.0 g, 8.7 mmol, 1.0 eq) was added to con.H2SO4 (20 mL) at 60 °C. The mixture was stirred at 90 °C for 2 h and poured into ice water (100 mL). The precipitate formed was collected by filtration and washed with H2O. The collected solid was dried in vacuo to give the crude product, 5,7-difluoro-4- methoxyindoline-2, 3-dione (1.5 g, 81.1 %) as a white solid, which was used without further purification. LCMS: m/z 214.1 (M+H+).
Step 5: Synthesis of 2-amino-3,5-difluoro-6-methoxybenzoic acid
Figure imgf000083_0001
[00255] To a solution of 5, 7-difluoro-4-methoxyindoline-2, 3-dione (1.7 g, 8.0 mmol, 1.0 eq) in 2N aqueous NaOH (31.9 mL, 63.8 mmol, 8.0 eq) was added 30 % aqueous H2O2 (4.5 g, 39.9 mmol, 5.0 eq). The mixture was stirred at room temperature for 15 h. The reaction was quenched with Na2SO3, and adjusted pH ~ 2 with con. HC1. The precipitate formed was collected by filtration, and washed with H2O, dried in vacuo to get crude product, 2-amino-3,5-difluoro-6- methoxybenzoic acid (1.0 g, 61.7 %) as a brown solid. 1H NMR (300 MHz, DMSO-d6) δ 7.36 (t, J= 11.1 Hz, 1H), 3.77 (s, 3H). LCMS: m/z 204.1 (M+H+).
Step 6: Synthesis of 6,8-difluoro-5-methoxyquinazoline-2,4-diol
Figure imgf000083_0002
[00256] To a solution of 2-amino-3,5-difluoro-6-methoxybenzoic acid (500 mg, 2.5 mmol, 1.0 eq) in DCM (5 mL) was added chlorosulfonyl isocyanate (801 mg, 5.7 mmol, 2.3 eq) at 0 °C under nitrogen atmosphere. The reaction was stirred at room temperature overnight. The mixture was concentrated to give a residue. The residue was resolved in 6N HC1 aqueous (15 mL) and stirred at 100 °C overnight. The precipitate formed was collected by filtration, and washed with H2O, dried in vacuo to get crude product, 6,8-difluoro-5-methoxyquinazoline-2,4-diol (300 mg, 53.4 %) as a brown solid. LCMS: m/z 229.1 (M+H+).
Step 7: Synthesis of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline
Figure imgf000083_0003
[00257] A solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (500 mg, 2.2 mmol, 1.0 eq) and DIEA (1.4 g, 11.0 mmol, 5.0 eq) in POCI3 (5 mL) was stirred at 90 °C for 3 h under nitrogen atmosphere. The mixture was concentrated to give the crude product. The crude product was purified by silica gel column chromatography (DCM/MeOH 60: 1 ~10: 1) to give the desired product, 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (340 mg, 58.5 %) as a white solid. ’H NMR (300 MHz, CDCl3) 8 7.61-7.54 (m, 1H), 4.08 (d, J= 1.5 Hz, 1H).
Intermediate 6:
2,4-dichloro-5,8-difluoroquinazoline-6-carbonitrile
Figure imgf000084_0001
Step 1: Synthesis of 3-bromo-2,5-difluoroaniline
Figure imgf000084_0002
[00258] To a solution of l-bromo-2,5-difluoro-3-nitrobenzene (100 g, 0.42 mol, 1.0 eq) in EtOH (900 mL) was added Fe powder (70.8 g, 1.26 mol, 3.0 eq) and a solution of NH4CI (112.4 g, 2.11 mol, 5.0 eq) in water (180 mL). The resulting mixture was stirred at 80 °C for 2 h. The resulting mixture was filtered. The filter cake was washed with EtOAc (500 mL). The combined filtrate was concentrated under reduced pressure to give a residue. The residue was diluted with water (300 mL) and extracted with EtOAc (400 mL x 3). The organic phase was washed with brine (300 mL), dried with Na2SO4, fdtered and concentrated to give the crude product. The crude product was purified by silica gel column chromatography (petroleum ether: EtOAc = 50: 1) to give 3 -bromo-2, 5 -difluoroaniline (68 g, 77.8%) as a yellow oil. 1H NMR (300 MHz, CDCl3): δ 6.64 - 6.58 (m, 1H), 6.47 - 6.39 (m, 1H). LCMS: m/z 207.9 (M+H+).
Step 2: Synthesis of (E)-N-(3-bromo-2,5-difluorophenyl)-2-(hydroxyimino)acetamide
Figure imgf000085_0001
[00259] To a solution of Na2SO4 (373.0 g, 2.62 mol, 8.0 eq), Hydroxylamine hydrochloride (79.9 g, 1.15 mol, 3.5 eq) and 2, 2, 2-tri chloroethane- 1,1 -diol (81.3 g, 0.49 mol, 1.5 eq) in H2O (1500 mL) was added 3-bromo-2,5-difluoroaniline (68.0 g, 0.32 mol, 1.0 eq) in EtOH (250 mL), H2O (200 mL) and cone. HC1 (50 mL). The reaction mixture was stirred at 60 °C for 15 h. The precipitate formed was collected by fdtration, washed with water, dried in vacuo to give (E)-N- (3 -bromo-2, 5-difluorophenyl)-2-(hydroxyimino) acetamide (95.0 g, crude) as a yellow solid. LCMS: 279.0 (M+H+).
Step 3: Synthesis of 6-bromo-4,7-difluoroindoline-2, 3-dione
Figure imgf000085_0002
[00260] A solution of (E)-N-(3-bromo-2,5-difluorophenyl)-2-(hydroxyimino) acetamide (95.0 g, crude) in con. H2SO4 (500 mL) was stirred at 90 °C for 1 h under nitrogen atmosphere. The reaction mixture was poured into ice water (800 mL). The precipitate formed was collected by fdtration, washed with water (200 mL), dried in vacuo to give 6-bromo-4,7-difluoroindoline-2,3- dione (54.9 g, crude) as a black solid. LCMS: m/z 261.9 (M+H+).
Step 4: Synthesis of 2-amino-4-bromo-3,6-difluorobenzoic acid
Figure imgf000085_0003
[00261] To a solution of 6-bromo-4,7-difluoroindoline-2, 3-dione (54.9 g, crude) in 2M NaOH (500 mL) was added 30% H2O2 (80 mL). The reaction mixture was stirred at room temperature for 15 h. The aqueous layer was extracted with EtOAc (200 mL x 2) to remove neutral impurities. The aqueous phase was acidified with 2 N HC1. The precipitate formed was collected by filtration, washed with water (200 mL), dried in vacuo to give 2-amino-4-bromo-3,6- difluorobenzoic acid (37.6 g, crude) as a yellow solid. LCMS: m/z 251.9 (M+H+).
Step 5: Synthesis of 2-amino-4-bromo-3,6-difluoro-5-iodobenzoic acid
Figure imgf000086_0001
[00262] To a solution of 2-amino-4-bromo-3,6-difluorobenzoic acid (13.4 g, 53.38 mmol, 1.0 eq) in DCM (120 mL) and DMF (40 mL) was added NIS (24.0 g, 106.77 mmol, 2.0 eq) Then the reaction mixture was stirred at room temperature for 4 h under nitrogen atmosphere. The mixture was diluted with water (80 mL) and extracted with EtOAc (100 mL x 3). The organic phase was washed with brine (80 mL), dried with Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 5: 1) to give 2-amino-4-bromo-3,6-difluoro-5-iodobenzoic acid (9.6 g, 47.7%) as a yellow solid. LCMS: m/z 377.9 (M+H+).
Step 6: Synthesis of 7-bromo-5,8-difluoro-6-iodo-2-mercaptoquinazolin-4-ol
Figure imgf000086_0002
[00263] A solution of 2-amino-4-bromo-3,6-difluoro-5-iodobenzoic acid (6.0 g, 15.9 mmol, 1.0 eq) in SOCL (40 mL) was stirred at 50°C for 2 h. The mixture was concentrated and dissolved in Acetone (100 mL), which was added into a solution of Ammonium thiocyanate (1.33 g, 17.5 mmol, 1.1 eq) in Acetone (100 mL) dropwise. The reaction mixture was stirred at room temperature for Ih. The precipitate formed was collected by filtration, dried in vacuo to give 7-bromo-5,8-difluoro-6-iodo-2-mercaptoquinazolin-4-ol (5.5 g, crude) as a yellow solid. LCMS: m/z 418.8 (M+H+).
Step 7: Synthesis of 7-bromo-5,8-difluoro-6-iodo-2-(methylthio)quinazolin-4-ol
Figure imgf000086_0003
[00264] To a solution of 7-bromo-5,8-difluoro-6-iodo-2-mercaptoquinazolin-4-ol (5.5 g, 13.15 mmol, 1.0 eq) in 1% NaOH (80 mL) was added Mel (1.87 g, 13.15 mmol, 1.0 eq) in MeOH (60 mL). The reaction mixture was stirred at room temperature for 1 h. The aqueous phase was acidified with 2 N HC1. The precipitate formed was collected by filtration, dried in vacuo to give 7-bromo-5,8-difluoro-6-iodo-2-(methylthio)quinazolin-4-ol (5.0 g, crude) as a yellow solid. LCMS: m/z 432.8 (M+H+).
Step 8: Synthesis of 7-bromo-4-chloro-5,8-difluoro-6-iodo-2-(methylthio)quinazoline
Figure imgf000087_0001
[00265] To a solution of 7-bromo-5,8-difluoro-6-iodo-2-(methylthio)quinazolin-4-ol (2.0 g, 4.62 mmol, 1.0 eq) in POCl3 (15 mL) was added DIEA (1.5 g, 11.54 mmol, 2.5 eq). Then the reaction mixture was stirred at 90 °C for 15 h under nitrogen atmosphere. The mixture was concentrated and purified by silica gel chromatography (eluted with PE: EtOAc = 100: 1) to give 7-bromo-4-chl oro-5, 8-difluoro-6-iodo-2-(methylthio)quinazoline (1.4 g, 67.3%) as a yellow solid. LCMS: m/z no MS signal.
Figure imgf000087_0002
Figure imgf000087_0003
[00266] To a solution of 2-amino-4-bromo-3,6-difluorobenzoic acid (5.0 g, 34.01 mmol, 1.0 eq) in con. H2SO4 (30 mL) was added NCS (3.18 g, 23.81 mmol, 1.2 eq) in portion. The mixture was stirred at 80 °C for 15 h. The reaction mixture was poured into ice water (90 mL). The precipitate formed was collected by fdtration, washed with ice water (30 mL), dried in vacuo to give 2-amino-4-bromo-5-chloro-3,6-difluorobenzoic acid (4.0 g, crude) as a brown solid. LCMS: m/z 283.9 (M-H-).
Step 2: Synthesis of 7-bromo-6-chloro-5,8-difluoro-2-mercaptoquinazolin-4-ol
Figure imgf000088_0001
[00267] A mixture of 2-amino-4-bromo-5-chloro-3,6-difluorobenzoic acid (3.8 g, 13.27 mmol, 1.0 eq) in SOCl3 (40 mL) was stirred at 50 °C for 3 h. The mixture was concentrated and dissolved in Acetone (50 mL), which was added into a solution of Ammonium thiocyanate (1.11 g, 14.59 mmol, 1.1 eq) in Acetone (50 mL) dropwise. Then the reaction mixture was stirred at room temperature for 1 h. The precipitate formed was collected by fdtration, dried in vacuo to give 7-bromo-6-chloro-5,8-difluoro-2-mercaptoquinazolin-4-ol (2.5 g, 38.5% for 2 steps) as a white solid. LCMS: m/z 326.9 (M+H+).
Step 3: Synthesis of 7-bromo-6-chloro-5,8-difluoro-2-(methylthio)quinazolin-4-ol
Figure imgf000088_0002
[00268] To a solution of 7-bromo-6-chl oro-5, 8-difluoro-2-mercaptoquinazolin-4-ol (3.8 g, 11.60 mmol, 1.0 eq) in aq. NaOH (17.4 mL, 17.40 mmol, 1.5 eq, IM) was added Mel (1.8 g, 12.76 mmol, 1.0 eq) in MeOH (17 mL). Then the reaction mixture was stirred at room temperature for 1 h. The mixture was concentrated to remove MeOH and extracted with EtOAc (50 mL x 2). The organic layers were washed with brine (50 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give residue. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc = 2 I 1) to give 7-bromo-6-chloro-5,8- difluoro-2-(methylthio)quinazolin-4-ol (1.7 g, 65.2%) as a yellow solid. 1H NMR (400 MHz, DMSO-cL): δ 3.59 (s, 1H). LCMS: m/z 340.8 (M+H+). Intermediate 8
5-(Benzyloxy)-2 4 dichloro 6 8 difluoroquinazoline
Figure imgf000089_0001
Synthetic scheme:
Figure imgf000089_0002
Step 1: Synthesis of l-(benzyloxy)-2,4-difluoro-5-nitrobenzene
Figure imgf000089_0003
[00269] To a solution of compound 2,4-difluoro-5-nitrophenol (24.3 g, 138.9 mmol, 1.0 eq) and (bromomethyl)benzene (26.1 g, 152.7mmol, 1.1 eq) in DMF (250 mL) was added K2CO3 (57.5 g, 416.4 mmol, 3.0 eq). Then the reaction mixture was stirred at 50 °C for 15 h. The mixture was poured into ice water (1 L). The precipitate formed was collected by filtration, washed with water, dried in vacuo to get compound l-(benzyloxy)-2,4-difluoro-5-nitrobenzene (36.0 g, 97.8%) as a yellow solid 1H NMR (400 MHz, CDCl3): 7.76 (t, J= 7.6 Hz, 1H), 7.48 -
7.35 (m, 5H), 7.07 (t, J= 10.0 Hz, 1H), 5.18 (s, 2H).
Step 2: Synthesis of 5-(benzyloxy)-2,4-difluoroaniline
Figure imgf000090_0001
[00270] To a mixture of Fe (6.3 g, 113.1 mmol, 3.0 eq) and NFUCl (6.1 g, 113.1 mmol, 3.0 eq) in EtOH (75 mL) and H2O (25 mL) was added compound l-(benzyloxy)-2,4-difluoro-5- nitrobenzene (10.0 g, 37.7 mmol, 1.0 eq) in THF (50 mL) at 70 °C. The mixture was stirred at 80 °C for 5 h. The mixture was fdtered through a Celite pad, and the fdtrate was extracted with EtOAc (150 mL x 3). The combined organic layers were washed with brine (100 mL), dried over Na2SO4 and concentrated to give a crude. The crude was purified by silica gel column chromatography (Petroleum ether/ EtOAc 5/1) to give 5-(benzyloxy)-2,4-difluoroaniline (6.0 g, 64.7%) as a yellow solid. 1H NMR (400 MHz, CDCl3): d 7.44 - 7.30 (m, 5H), 6.82 (t, J= 10.8 Hz, 1H), 6.45 (t, J= 8.4 Hz, 1H), 5.06 (s, 2H), 3.11 (brs, 2H). LCMS: m/z 236.1 (M+H+).
Step 3: Synthesis of 3-(benzyloxy)-4,6-difluoro-2-iodoaniline
Figure imgf000090_0002
[00271] To a solution of 5-(benzyloxy)-2,4-difluoroaniline (5.0 g, 21.3 mmol, 1.0 eq) in AcOH (50 mL) was added NIS (5.0 g, 22.3 mmol, 1.1 eq). The mixture was stirred at room temperature for 3 h and then quenched with H2O (20 mL). The resulting mixture was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with sat. NaHCOs aqueous (20 mL x 3), brine (20 mL), dried over Na2SO4 and concentrated to give a crude. The crude was purified by silica gel column chromatography (Petroleum ether/ EtOAc 5/1) to give 3- (benzyloxy)-4,6-difluoro-2-iodoaniline (2.0 g, 30.0%) as a brown solid. LCMS: m/z 362.0 (M+H+).
Step 4: Synthesis of methyl 2-amino-6-(benzyloxy)-3,5-difluorobenzoate
Figure imgf000091_0001
[00272] A mixture of 3-(benzyloxy)-4,6-difluoro-2-iodoaniline (1.8 g, 5.0 mmol, 1.0 eq), TEA (1 .3 g, 12.5 mmol, 2.5eq) and Pd(dppf)CL (723 mg, 1 .0 mmol, 0.2 eq) in MeOH (18 mL) was stirred at 65 °C under CO atmosphere. The reaction was concentrated to give a residue. The residue was partitioned between EtOAc (20 mL) and H2O (15 mL). The layers were separated. The aqueous layer was extracted with EtOAc (100 mL x 3). The crude was purified by silica gel column chromatography (Petroleum ether/ EtOAc 10/1) to give methyl 2-amino-6-(benzyloxy)- 3,5-difluorobenzoate (640 mg, 42.7%) as a white solid. 1H NMR (300 MHz, CDCl3): δ 7.54 - 7.33 (m, 5H), 6.98 (t, J= 10.5 Hz, 1H), 5.04 (s, 2H), 4.70 (brs, 2H), 3.83 (s, 3H). LCMS: m/z 294.1 (M + H+).
Step 5: Synthesis of 5-(benzyloxy)-6,8-difluoroquinazoline-2,4-diol
Figure imgf000091_0002
[00273] To a solution of compound methyl 2-amino-6-(benzyloxy)-3,5-difluorobenzoate (570 mg, 1.9 mmol, 1.0 eq) in THF (6 mL) was added 2,2,2-trichloroacetyl isocyanate (550 mg, 2.9 mmol, 1.5 eq). Then the reaction mixture was stirred at room temperature for 10 min. The mixture was concentrated to give a white solid. The solid was re-dissolved in MeOH (10 mL). Then to the mixture was added NLL/MeOH M) (0.7 mL, 5.1 mmol, 2.6 eq). Then the reaction mixture was stirred at room temperature for 2 h. The mixture was concentrated to give 5- (benzyloxy)-6,8-difluoroquinazoline-2,4-diol (680 mg, crude) as a brown solid. LCMS: m/z 303.0 (M-H ).
Step 6: Synthesis of 5-(benzyloxy)-2,4-dichloro-6,8-difluoroquinazoline
Figure imgf000092_0001
[00274] A solution of compound 5-(benzyloxy)-6,8-difluoroquinazoline-2,4-diol (680 mg, 2.2 mmol, 1.0 eq) and DIEA (865 mg, 6.7 mmol, 5.0 eq) in POCl3 (3 m ) was stirred at 90 °C for 3 h under nitrogen atmosphere. The mixture was concentrated to give compound 5-(benzyloxy)- 2,4-dichloro-6,8-difluoroquinazoline (900 mg, crude) as a black solid.
Intermediate 9:
2,4-dichloro-5,8-difluoro-6-methoxyquinazoline
Figure imgf000092_0002
Figure imgf000093_0001
[00275] To a solution of 2, 5 -difluorophenol (30.0 g, 230.6 mmol, 1.0 eq) in DCM (460 mL) was added con. HNO3 (14.5 g, 230.6 mmol, 1.0 eq) dropwise at 0°C. Then the reaction mixture was stirred at room temperature for 1 h. The reaction was diluted with water (200 mL) and extracted with DCM (180 mL x 3). The organic phase was washed with brine (200 mL), dried with Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (Petroleum ether: DCM = 2:1) to give 2,5-difluoro-4-nitrophenol (21.4g, 53.0%) as a yellow solid. 1H NMR (400 MHz, CD3OD): 3 7.96 (dd, J= 10.8, 7.2 Hz, 1H), 6.88 (dd, J= 12.4, 7.2 Hz, 1H). LCMS: m/z 174.0 (M-H ).
Step 2: Synthesis of 2-bromo-3,6-difluoro-4-nitrophenol
Figure imgf000093_0002
[00276] To a solution of 2,5-difluoro-4-nitrophenol (5.0 g, 28.56 mmol, 1.0 eq) in AcOH (18.0 mL) was added Bn (5.0 g, 31.41 mmol, 1.1 eq) dropwise at room temperature. The reaction mixture was stirred at room temperature for 15 h. The reaction was quenched with aqueous Na2S2O3 (30 mL) and extracted with EtOAc (40 mL x 3). The organic phase was washed with brine (50 mL), dried with Na2SO4, filtered and concentrated to give residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 3: 1) to give 2-bromo-3,6-difluoro-4-nitrophenol (6.8 g, 93.0%) as red solid. 1H NMR (300 MHz, CD3OD): 3 8.04 (dd, J= 10.5, 7.2 Hz, 1H). LCMS: m/z 251.9, 253.9 (M-L).
Step 3: Synthesis of 3-bromo-l,4-difluoro-2-methoxy-5-nitrobenzene
Figure imgf000093_0003
[00277] To a solution of 2-bromo-3,6-difluoro-4-nitrophenol (4.5 g, 17.72 mmol, 1.0 eq) in Acetone (45 mL) was added NaHCCh (4.5 g, 53.15 mmol, 3 eq) and Me2SO4 (4.5 g, 35.44 mmol, 2 eq). The reaction mixture was stirred at 50 °C for 15 h. The reaction was quenched with H2O (50 mL) and extracted with EtOAc (50 mL x 3). The organic phase was washed with brine (50 mL), dried with Na2SO4, fdtered and concentrated to give residue. The residue was purified by silica gel column chromatography (Petroleum ether: EtOAc = 50: 1) to give 3-bromo-l,4- difluoro-2-methoxy-5-nitrobenzene (1.6 g, 33.7%) as a white oily. 1HNMR (400 MHz, CD3OD): 3 8.12 (dd, J= 11.6, 7.2 Hz, 1H), 4.16 (d, J = 3.6 Hz, 3H).
Step 4: Synthesis of 3-bromo-2,5-difluoro-4-methoxyaniline
Figure imgf000094_0001
[00278] To a solution of 3-bromo-l,4-difluoro-2-methoxy-5-nitrobenzene (30.5 g, 113.8 mmol, 1.0 eq) in EtOH (50 mL) was added H2O (20 mL), Fe (25.4 g, 455.2mmol, 4.0 eq) and NH4CI (24.4 g, 455.2mmol, 4.0 eq). The reaction mixture was stirred at 40 °C for 2 h. The mixture was filtered and concentrated to remove EtOH, diluted with water (50 mL) and extracted with EtOAc (60 mL x 3). The organic layers were washed with brine (50 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give residue. The residue was purified by silica gel column chromatography (Petroleum ether: EtOAc = 100: 1) to give 3- bromo-2, 5 -difluoro-4-methoxy aniline (14.8 g, 54.6%) as a yellow solid. 1 NHMR (400 MHz, CDCl3): 3 6.53 (dd, J= 11.6, 8.4 Hz, 1H), 3.85 (d, J= 0.8 Hz, 3H). LCMS: m/z 237.9, 239.9 (M+H+).
Step 5: Synthesis of 3-bromo-2,5-difluoro-6-iodo-4-methoxyaniline
Figure imgf000094_0002
[00279] To a solution of 3-bromo-2,5-difluoro-4-methoxyaniline (3.0 g, 12.60 mmol, 1.0 eq) in DMSO (30 mL) was added I2 (9.60 g, 37.81 mmol, 3.0 eq). Then the reaction mixture was stirred at room temperature for 15 h. The reaction was quenched with aqueous Na2S2C>3 (20 mL) and extracted with EtOAc (30 mL x 3). The organic phase was washed with water (20 mL x 3) and brine (20 mL), dried with Na2SO4, fdtered and concentrated to give residue. The mixture was concentrated and purified by silica gel chromatography (Petroleum ether: EtOAc = 300: 1) to give 3-bromo-2,5-difluoro-6-iodo-4-methoxyaniline (1.6 g, 35%) as a yellow solid. 1H NMR (300 MHz, CDCE): 5 3.86 (d, J= 0.6 Hz, 3H). LCMS: m/z 363.8, 365.8 (M+H+).
Step 6: Synthesis of methyl 2-amino-4-bromo-3,6-difluoro-5-methoxybenzoate
Figure imgf000095_0001
[00280] To a solution of 3-bromo-2,5-difluoro-6-iodo-4-methoxyaniline (2.2 g, 6.05 mmol, 1.0 eq) in MeOH (30 mL) was added TEA (1.8 g, 18.13 mmol, 3.0 eq) and Pd(dppf)C12 (907 mg, 1.25 mmol, 0.2 eq) in the sealed tube. Then the reaction mixture was stirred at 70 °C for 8 h under CO (1 MPa). The mixture was concentrated and diluted with H2O (20 mL), extracted with EtOAc (15 mL x 3). The organic phase was washed with brine (15 mL), dried with Na2SO4, filtered and concentrated to give residue. The residue was purified by silica gel chromatography (Petroleum ether: EtOAc = 300: 1) to give methyl 2-amino-4-bromo-3,6-difluoro-5- methoxybenzoate (1.4 g, 78%) as yellow solid. 1H NMR (400 MHz, CDCL): 8 3.93 (s, 3H), 3.85 (s, 3H). LCMS: m/z 296.0, 297.9 (M+H+).
Step 7: Synthesis of 7-bromo-5,8-difluoro-6-methoxyquinazoline-2,4-diol
Figure imgf000095_0002
[00281] To a solution of methyl 2-amino-4-bromo-3,6-difluoro-5-methoxybenzoate (1.4 g, 4.73 mmol, 1.0 eq) in THF (14 mL) was added 2,2,2-trichloroacetyl isocyanate (1.4 g, 7.09 mmol, 1.5 eq). The reaction mixture was stirred at room temperature for 10 min. The mixture was concentrated and dissolved in MeOH (14 mL). To the solution was added NHs/MeOH (7M, 1.76 ml, 12.30 mmol, 1.0 eq) dropwise. The reaction mixture was stirred at room temperature for 1 h. The reaction mixture was concentrated under reduced pressure to give 7-bromo-5,8-difluoro- 6-methoxyquinazoline-2,4-diol (2.8 g, crude) as a yellow solid. LCMS: m/z 306.9, 308. 9 (M+H+).
Step 8: Synthesis of 7-bromo-2,4-dichloro-5,8-difluoro-6-methoxyquinazoline
Figure imgf000096_0001
[00282] To a solution of 7-bromo-5,8-difluoro-6-methoxyquinazoline-2,4-diol (730 mg, 2.49 mmol, 1.0 eq) in POCl3 (10 mL) was added DIEA (1.61 g, 12.46 mmol, 5.0 eq). Then the reaction mixture was stirred at 90 °C for 1 h. The mixture was concentrated to give residue. The residue was purified by silica gel column chromatography (Petroleum ether: EtOAc =10: 1) to give 7-bromo-2,4-dichloro-5,8-difluoro-6-methoxyquinazoline (620 mg, 76.9% for two steps) as a white solid. XH NMR (400 MHz, CDCl3): δ 4.11 (d, .7= 2.8 Hz, 3H).
Intermediate 10:
3-(Bis(4-methoxybenzyl)amino)-7-fluoro-8-((triisopropylsilyl)ethynyl)isoquinolin-l-yl trifluoromethanesulfonate
Figure imgf000096_0002
Step 1: Synthesis of l-(tert-butoxy)-3-chloro-7-fluoroisoquinoline
Figure imgf000097_0001
[00283] To a solution of compound l,3-dichloro-7-fluoroisoquinoline (5.0 g, 23.3 mmol, 1.0 eq) in toluene (100 mL) was added /-BuOK in THF (30.2 mL, 30.2 mmol, 1.3 eq, 1.0 M in THF) at room temperature The reaction was stirred at 80 °C for 4 h under nitrogen atmosphere. The reaction mixture was concentrated to give a crude. The crude was added water (100 mL) and extracted with EtOAc (100 mL x 3). The combined organic phases were washed with brine (100 mL), dried and concentrated to give a residue. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 50: 1) to give compound l-(tert-butoxy)-3- chloro-7-fluoroisoquinoline (5.6 g, 95.2%) as a white solid. 1H NMR (400 MHz, CDCL): d 7.75 (dd, J= 9.6, 2.4 Hz, 1H), 7.63-7.58 (m, 1H), 7.39 (td, J= 8.4, 2.4 Hz, 1H), 7.18 (s, 1H), 1.72 (s, 9H).
Step 2: Synthesis of l-(tert-butoxy)-7-fluoro-N, N-bis(4-methoxybenzyl)isoquinolin-3-amine
Figure imgf000097_0002
[00284] To a solution of compound l-(tert-butoxy)-3-chloro-7-fluoroisoquinoline (5.6 g, 22.1 mmol, 1.0 eq) in THF (110 mL) was added HN(PMB)2 (8.5 g, 33.2 mmol, 1.5 eq), Z-BuONa (4.3 g, 44.3 mmol, 2.0 eq) and S-Phos Pd G3 (1.0 g, 1.3 mmol, 0.058 eq) at room temperature. The reaction was stirred at 80 °C for 15 h under nitrogen atmosphere. The crude was added water (100 mL) and extracted with EtOAc (100 mL x 3). The combined organic phases were washed with brine (100 mL), dried and concentrated to give a residue. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 30: 1) to give compound l -(tert- butoxy)-7-fluoro-N, N-bis(4-methoxybenzyl)isoquinolin-3-amine (5.2 g, 49.6%) as a yellow solid.1H NMR (400 MHz, CDCL): d 7.67 - 7.58 (m, 1H), 7.38 - 7.33 (m, 1H), 7.26 - 7.16 (m, 6H), 6.85 - 6.78 (m, 4H), 4.69 (s, 4H), 3.77 (s, 6H), 1.63 (s, 9H). LCMS: m/z 475.2 (M+H+).
Step 3: Synthesis of 3-(bis(4-methoxybenzyl)amino)-7-fluoroisoquinolin-l-ol
Figure imgf000098_0001
[00285] To a solution of compound l-(tert-butoxy)-7-fluoro-N, N-bis(4- methoxybenzyl)isoquinolin-3-amine (2.0 g, 4.2 mmol, 1.0 eq) in 'PrOH (12 mL) was added HC1 in dioxane (12 mL, 4.0 M in dioxane) at room temperature. The reaction was stirred at room temperature for 1 h. The reaction mixture was concentrated to give a crude. The crude was added aqueous sodium bicarbonate solution (50 mL) and extracted with EtOAc (50 mL x 3). The combined organic phases were washed with brine (50 mL), dried and concentrated to give a residue. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 5: 1) to give compound 3-(bis(4-methoxybenzyl)amino)-7-fluoroisoquinolin-l-ol (1.6 g, 90.9%) as a yellow solid. 1H NMR (400 MHz, CDCl3): δ 10.05 (brs, 1H), 7.79 - 7.71 (m, 1H), 7.25 - 7.14 (m, 6H), 6.86 (d, J = 8.8 Hz, 4H), 5.67 (brs, 1H), 4.44 (s, 4H), 3.79 (s, 6H). LCMS: m/z 419.2 (M+H+).
Step 4: Synthesis of 3-(bis(4-methoxybenzyl)amino)-7-fluoro-8-((triisopropylsilyl) ethynyl)isoquinolin-l-ol
Figure imgf000098_0002
[00286] To a solution of compound 3-(bis(4-methoxybenzyl)amino)-7-fluoroisoquinolin-l-ol
(1.8 g, 4.3 mmol, 1.0 eq) in dioxane (30 mL) was added (bromoethynyl)triisopropylsilane (1.8 g, 6.9 mmol, 1.6 eq), KOAc (844 mg, 8.6 mmol, 2.0 eq) and [Ru(cumene)Cl]2 (263 mg, 0.43 mmol, 0.1 eq) at room temperature. The reaction was stirred at 110 °C for 15 h under nitrogen atmosphere. The reaction was concentrated to give a crude product. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 50: 1) to give compound 3-(bis(4-methoxybenzyl)amino)-7-fluoro-8-((triisopropylsilyl)ethynyl)isoquinolin-l- ol (1.8 g, 70.0%) as a yellow solid. 1H NMR (300 MHz, CDCl3): S 7.22 - 7.09 (m, 6H), 6.85 (d, J= 8.4 Hz, 4H), 5.55 (s, 1H), 4.39 (s, 4H), 3.79 (s, 6H), 1.18 (s, 21H). LCMS: m/z 599.3 (M+H+). Step 5: Synthesis of 3-(bis(4-methoxybenzyl)amino)-7-fluoro-8- ((triisopropylsilyl)ethynyl)isoquinolin-l-yl trifluoromethanesulfonate
Figure imgf000099_0001
[00287] To a solution of compound 3-(bis(4-methoxybenzyl)amino)-7-fluoro-8-
((triisopropylsilyl)ethynyl)isoquinolin-l-ol (1.9 g, 3.2 mmol, 1.0 eq) in DCM (38 mL) was added Tf2O (2.7 g, 9.6 mmol, 3.0 eq) and TEA (1.9 g, 19.2 mmol, 6.0 eq). The reaction was stirred at - 40 °C for 1 h. The reaction mixture was concentrated under reduced pressure to give a crude. The crude was purified by silica gel column chromatography (Petroleum ether: EtOAc = 10: 1) to give 3-(bis(4-methoxybenzyl)amino)-7-fluoro-8-((triisopropylsilyl)ethynyl)isoquinolin-l-yl trifluoromethanesulfonate (2.0 g, 86.2%) as a yellow oil. 1H NMR (400 MHz, CDCl3): δ 7.42 - 7.27 (m, 2H), 7.14 (d, J= 8.4 Hz, 4H), 6.84 (d, J= 8.4 Hz, 4H), 6.55 (s, 1H), 4.68 (s, 4H), 3.79 (s, 6H), 1.20-1.15 (m, 21H).
Intermediate 11:
N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000099_0002
Synthetic scheme:
Figure imgf000099_0003
Step 1: Synthesis of tert-butyl 2-(isopropylcarbamoyl)-7,8-dihydro-4H-pyrazolo[l,5- a][l,4]diazepine-5(6H)-carboxylate
Figure imgf000100_0001
[00288] To a solution of 5-(tert-butoxycarbonyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine-2-carboxylic acid (400 mg, 1.42 mmol, 1.0 eq) in DMF (8.0 mL) was added propan-2-amine (168 mg, 2.84 mmol, 2.0 eq), DIEA (551 mg ,4.27 mmol, 3.0 eq) and HATU (811 mg, 2.13 mmol, 1.5 eq). Then the mixture was stirred at room temperature for 2 h. The mixture was concentrated, diluted with water (15 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with water (10 mL x 3) and brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by flash silica gel column chromatography (0-5% MeOH in DCM) to give tert-butyl 2-(isopropylcarbamoyl)-7,8-dihydro- 4H-pyrazolo[l,5-a][l,4]diazepine-5(6H)-carboxylate (340 mg 74.2%) as a white solid. 1H NMR (400 MHz, CDC13): 3 6.63 (s, 1H), 4.55 - 4.34 (m, 4H), 4.31 - 4.18 (m, 1H), 3.72 (s, 2H), 1.93 (s, 2H), 1.40 (s, 9H), 1.24 (d, J= 6.4 Hz, 6H). LCMS: m/z 323.2 (M+H+).
Step 2: Synthesis of N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2- carboxamide
Figure imgf000100_0002
[00289] To a solution of tert-butyl 2-(isopropylcarbamoyl)-7,8-dihydro-4H-pyrazolo[l,5- a][l,4]diazepine-5(6H)-carboxylate (330 mg, 1.02 mmol, 1.0 eq) in DCM (3.0 mL) was added TFA (0.6 mL). The mixture was stirred at room temperature for 2 h. The pH was adjusted to around 9 by a solution of NaHCCh and extracted with DCM/MeOH = 3/1 (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (190 mg crude) as a white solid. LCMS: m/z 223.1 (M+H+).
Intermediate 12:
3-(difluoromethyl)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl trifluoromethanesulfonate
Figure imgf000101_0001
Step 1: Synthesis of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diol
Figure imgf000101_0002
[00290] To a solution of 7-fluoronaphthalene-l,3-diol (1.0 g, 5.6 mmol, 1.0 eq) in Dioxane (10 mL) was added (bromoethynyl)triisopropyl silane (1.5 g, 5.9 mmol, 1.05 eq), AcOK (1.1 g, 11.2 mmol, 2.0 eq) and Dichloro(p-cymene) ruthenium (II) dimer (343 mg, 0.50 mmol, 0.1 eq). The mixture was stirred at 110 °C for 3 h under N2. The mixture was filtered and the filtrate was concentrated to give a crude. The crude was purified by column chromatography (Petroleum ether/EtOAc = 5: 1) to give 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diol (1.3 g, 64.6%) as a yellow solid. 'H NVIR (400 MHz, CDCl3): b 7.86 - 7.80 (m, 2H), 7.55 (d, J= 7.6
Hz, 1H), 7.47 - 7.43 (m, 1H), 7.37 (t, J= 8.8 Hz, 1H), 1.18 - 1.17 (m, 21H).
Step 2: Synthesis of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diyl bis(trifluoromethanesulfonate)
Figure imgf000101_0003
[00291 ] To a solution of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l ,3-diol (1 .2 g, 3.3 mmol, 1.0 eq) in DCM (20 mL) was added TfzO (3.77 g, 13.3 mmol, 4.0 eq) and DIEA (2.6 g, 20.0 mmol, 6.0 eq) at 0 °C. The reaction mixture was stirred at room temperature for 3 h under N2. The mixture was diluted with water (15 mL) and extracted with DCM (20 mL x 3). The combined organic phase was washed with brine (20 mL), dried over Na2SO4, fdtered off and concentrated to give a residue. The residue was purified by column chromatography (Petroleum ether : EtOAc = 10: l) to give 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diyl bis(trifluoromethanesulfonate) (1.3 g, 62.4%) as a yellow solid. 1H NMR (400 MHz, CDCL): 9 7.87 (dd, J= 9.2, 5.2 Hz, 1H), 7.80 (d, J= 2.4 Hz, 1H), 7.51 - 7.47 (m, 2H), 1.17 - 1.16 (m, 21H).
Step 3: Synthesis of 3-(difluoromethyl)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l- yl trifluoromethanesulfonate
Figure imgf000102_0001
[00292] To a solution of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diyl bis(trifluoromethanesulfonate) (500.0 mg, 0.8 mmol, 1.0 eq) in Dioxane (5 mL) was added (1,3- bis(2,6-diisopropylphenyl)imidazolidin-2-ylidene)(difluoromethyl)argentate(I) (573.6 mg, 1.04 mmol, 1.3 eq) and t-BuXPhos-Pd-G3 (63.5 mg, 0.08 mmol, 0.1 eq) at room temperature. The reaction mixture was stirred at 100 °C for 12 h under N2. The mixture was quenched by the addition of saturated aqueous NH4CI solution (10 mL) and then extracted with EtOAc (20 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4, filtered off and concentrated to give residue. The residue was purified by silica gel column chromatography (Petroleum ether : EtOAc = 50: 1) to give 3-(difluoromethyl)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl trifluoromethanesulfonate (220 mg, 52.2%) as a yellow oil. 1 H NMR (400 MHz, CDCL): d 7.98 (s, 1H), 7.90 (dd, J = 9.2, 5.6 Hz, 1H), 7.65 (s, 1H), 7.45 (t, J = 8.8 Hz, 1H), 6.76 (t, J= 55.6 Hz, 1H), 1.18 - 1.16 (m, 21H). Intermediate 13:
4-bromo-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5-(trifluoromethyl)-lH-indazole
Figure imgf000103_0002
Step 1: Synthesis of l-bromo-5-fluoro-3-methyl-2-(trifluoromethyl)benzene
Figure imgf000103_0001
[00293] To a solution of l-bromo-5-fluoro-2-iodo-3-methylbenzene (20.0 g, 63.7 mmol, 1.0 eq) in DMF (400 mL) was added methyl 2,2-difluoro-2-(fluor sulfonyl) acetate (85.6 g, 446.0 mmol, 7.0 eq) and Cui (85.0 mg, 446.0 mmol, 7.0 eq). The reaction mixture was stirred at 70 °C for 15 h under nitrogen atmosphere. The reaction was fdtered and diluted with water (400 mL). The mixture was extracted with EtOAc (400 mL x 3). The organic phases were washed with brine (300 mL x 3), dried with Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether) to give l-bromo-5-fluoro-3- methyl-2-(trifluoromethyl)benzene (8.0 g, 49.0%) as a colorless oil. 1H NMR (300 MHz, CDCl3): 7.32 (dd, J= 7.5, 2.1 Hz, 1H), 6.94 (dd, J= 8.7, 2.1 Hz, 1H), 2.53 (q, J= 3.6 Hz, 3H). Step 2: Synthesis of 2-bromo-6-fluoro-4-methyl-3-(trifluoromethyl)benzaldehyde
Figure imgf000104_0001
[00294] To a solution of l-bromo-5-fluoro-3-methyl-2-(trifluoromethyl)benzene (12.4 g, 48.4 mmol, 1.0 eq) in THF (250 mL) was added LDA (48.4 mL, 97.0 mmol, 2.0 eq, 2.0 M in THF/hexane) dropwise at -78 °C under nitrogen atmosphere. Then the reaction mixture was stirred at -78 °C for 30 min. To the reaction mixture was added DMF (10.6 g, 145.3 mmol, 3.0 eq) dropwise at -78 °C under nitrogen atmosphere. The reaction mixture was stirred at -78 °C for 30 min. The mixture was quenched with aqueous ammonium chloride solution (250 mL) and extracted with EtOAc (250 mL x 3). The combined organic phases were washed with brine (250 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether: ethyl acetate = 50: 1) to give 2-bromo-6-fluoro-4- methyl-3-(trifluoromethyl)benzaldehyde (11.0 g, 79.9%) as a colorless oil. 1H NMR (300 MHz, CDCl3): 8 10.32 (s, 1H), 7.06 (d, J= 10.5 Hz, 1H), 2.59 (q, J= 3.9 Hz, 3H).
Step 3: Synthesis of 4-bromo-6-methyl-5-(trifluoromethyl)-lH-indazole
Figure imgf000104_0002
[00295] To a solution of 2-bromo-6-fluoro-4-methyl-3-(trifluoromethyl)benzaldehyde (11.0 g, 38.7 mmol, 1.0 eq) in DMSO (165 mL) was added hydrazine (24.8 g, 774.8 mmol, 20.0 eq) dropwise at room temperature. Then the reaction mixture was stirred at 60 °C for 2 h. The mixture was quenched with water (200 mL) and extracted with EtOAc (200 mL x 3). The combined organic phases were washed with brine (200 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether: ethyl acetate = 5: 1) to give 4-bromo-6-methyl-5-(trifluoromethyl)-lH-indazole (6.0 g, 55.6%) as a white solid. 1H NMR (300 MHz, CDCl3): 8 10.24 (brs, 1H), 8.19 (s, 1H), 7.33 (s, 1H), 2.65 (q, J= 3.3 Hz, 3H). LCMS: 279.0, 280.9 (M+H+).
Step 4: Synthesis of 4-bromo-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5-(trifluoromethyl)- 1H -indazole
Figure imgf000105_0003
[00296] To a solution of 4-bromo-6-methyl-5-(trifluoromethyl)-lH-indazole (1.0 g, 3.6 mmol, 1.0 eq) and p-TsOH (61.9 mg, 0.36 mmol, 0.1 eq) in DCM (20 mL) was added DHP (1.2 g, 14.4 mmol, 4.0 eq) in MeCN (5 mL) dropwise at room temperature. Then the reaction mixture was stirred at room temperature for 2 h. The mixture was quenched with water (40 mL) and extracted with EtOAc (40 mL x 3). The combined organic phases were washed with brine (40 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether: ethyl acetate = 10: 1) to give 4-bromo-6-methyl-l-(tetrahydro- 2H-pyran-2-yl)-5-(trifluoromethyl)-l H-indazole (1.2 g, 92.3%) as a colorless oil. 1H NMR (300 MHz, CDCl3): 5 8.11 (s, 1H), 7.42 (s, 1H), 5.68 (dd, J- 9.0, 2.7 Hz, 1H), 4.06 - 3.95 (m, 1H), 3.82 - 3.68 (m, 1H), 2.66 (q, J= 3.0 Hz, 3H), 2.58 - 2.44 (m, 1H), 2.22 - 2.05 (m, 2H), 1.80 - 1.67 (m, 3H). LCMS: 363.0, 365.1 (M+H+).
Intermediate 14:
2,4,5-trichloro-6,8-difluoroquinazoline
Figure imgf000105_0002
Synthetic scheme:
Figure imgf000105_0001
Step 1: Synthesis of (E)-N-(5-chloro-2,4-difluorophenyl)-2-(hydroxyimino)acetamide
Figure imgf000106_0001
[00297] To a solution of 5-chloro-2,4-difluoroaniline (10.0 g, 61.14 mmol, 1.0 eq), NH2OH«HC1 (12.7 g, 184.43 mmol, 3.0 eq), Na2SO4 (69.5 g, 489.14 mmol, 8.0 eq), chloral hydrate (15.2 g, 91.72 mmol, 1.5 eq) in water (250 mL) and EtOH (35 mL) was added HC1 (12 M, 9.2 mL, 110.40 mmol, 1.8 eq). The reaction mixture was stirred at 60 °C for 16 h. The resulting mixture was cooled to room temperature and fdtered, the fdter cake was dried to afford the crude, which was extracted with EtOAc (50 mL) and filtered, the filtrate was washed with brine (20 mL), dried over anhydrous Na2SO4 and organic phase was concentrated to dryness to give the residue. The residue was purified by silica gel chromatography (petroleum ether / EtOAc = 5: 1) to afford (E)-N-(5-chloro-2,4-difluorophenyl)-2-(hydroxyimino)acetamide (11.0 g, 76.7%) as a yellowish solid. 1H NMR (400 MHz, DMSO-fi : 3 12.37 (s, 1H), 10.01 (s, 1H), 8.05 (t, J= 8.0 Hz, 1H), 7.74 (s, 1H), 7.65 (t, J= 10.0 Hz, 1H).
Step 2: Synthesis of 4-chloro-5,7-difluoroindoline-2, 3-dione
Figure imgf000106_0002
[00298] (E)-N-(5-chloro-2,4-difluorophenyl)-2-(hydroxyimino)acetamide (7.0 g, 29.84 mmol, 1.0 eq) was added portion-wise to H2SO4 (98%, 70 mL) at 60 °C. The reaction was stirred at 90 °C for 4 h. The resulting mixture was cooled to room temperature and poured slowly into ice water (150 mL). The resulting precipitate was collected by filtration, washed with water (10 mL x 3) and dried under reduced pressure to afford 4-chloro-5,7-difluoroindoline-2, 3-dione (5.0 g, 77.0%) as a grey solid. LCMS: 215.9 (M-H ).
Step 3: Synthesis of 2-amino-6-chloro-3,5-difluorobenzoic acid
Figure imgf000106_0003
[00299] To a solution of 4-chloro-5,7-difluoroindoline-2, 3-dione (10.0 g, 45.97 mmol, 1 .0 eq) in NaOH (2 mol/L aqueous solution, 400 mL) was added dropwise H2O2 (30 mL, 37% aqueous solution) at 0 °C. The reaction mixture was stirred at room temperature for 15 h. After completion, the excess H2O2 was quenched with the addition of Na2S(T (36.9 g) and the mixture was stirred for 20min, then fdtered, the fdtrate was extracted by EtOAc, the product was in the aqueous phase, which was adjusted to pH = 1-2 with cone. HC1. The mixture was extracted by EtOAc, dried and concentrated under reduced pressure to afford 2-amino-6-chloro-3,5- difluorobenzoic acid (3.0 g, 31.5%) as a yellow solid. LCMS: 205.9 (M-H ).
Step 4: Synthesis of 5-chloro-6,8-difluoroquinazoline-2,4-diol
Figure imgf000107_0001
[00300] To a solution of 2-amino-6-chloro-3,5-difluorobenzoic acid (1.0 g, 4.92 mmol, 1.0 eq) in DCM (10 mL) was added dropwise CISO2NCO (1.6 g, 11.08 mmol, 2.3 eq) at 0 °C. The reaction mixture was stirred at room temperature for 12 h and concentrated under reduced pressure. To the mixture was added concentrated HC1 (6 N, 20 mL) and stirred at 100 °C for 16 h. The resulting mixture was cooled to room temperature and fdtered, the fdter cake was washed by water (2 mL x 3) and dried under reduced pressure to afford 5-chloro-6,8-difluoroquinazoline- 2,4-diol (0.35 g, crude) as a grey solid, which was used directly for the next step without further purification. LH NMR (400 MHz, DMSO-flfe): δ 11.51 (s, 1H), 11.36 (s, 1H), 7.95 (t, J= 9.2 Hz, 1H). LCMS: 233.0 (M+H+).
Step 5: Synthesis of 2,4,5-trichloro-6,8-difluoroquinazoline
Figure imgf000107_0002
[00301] To a solution of 5-chloro-6,8-difluoroquinazoline-2,4-diol (0.8 g, 3.44 mmol, 1.0 eq) in POCl3 (8 mL, 86.09 mmol, 25.0 eq) was added DIEA (0.6 g, 4.59 mmol, 1.3 eq). The reaction mixture was stirred at 110 °C for 2 h. The reaction mixture was concentrated under reduced pressure and the residue was diluted with DCM (20 mL) washed with ice water (20 mL x 2), dried over anhydrous Na2SO4 and concentrated under reduced pressure to give the residue, which was purified by silica gel column chromatography (petroleum ether / EtOAc - 10:1) to give 2,4,5-trichloro-6,8-difluoroquinazoline (0.9 g, 30.3% yield for 2 steps) as an off-white solid. 1H NMR (300 MHz, DMSO-d6): 67.50 (t, J= 9.3 Hz, 1H).
Intermediate 15: tert-butyl l-(methoxymethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000108_0001
Synthetic scheme:
Figure imgf000108_0002
Step 1: Synthesis of tert-butyl l-(methoxymethyl)-3-trityl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000108_0003
[00302] To a solution of tert-butyl (lR,5S)-3-trityl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (1.0 g, 2.20 mmol, 1.0 eq) and TMDEA (N, N, N', N' -tetramethylethylenediamine) (435 mg, 3.74 mmol, 1.7 eq) in THE (14.3 mL) at 0 °C was added s-BuLi (2.9 mL, 1.3 mol/L in hexane, 3.77 mmol, 1.7 eq). The mixture was stirred at 0 °C for 0.8 h. Then the mixture was added MOMBr (825 mg, 6.60 mmol, 3.0 eq) and stirred at 25 °C for 12 h. The reaction mixture was quenched with saturated NH4CI (10 mL). The mixture was diluted with EtOAc (20 mL x 2) and washed with water (50 mL) and brine (50 mL). The organic layer was dried over Na2SO4, filtered, and concentrated to afford the crude product. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc = 20:1) to give tert-butyl l-(methoxymethyl)- 3-trityl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (600 mg, 54.7%) as a white solid. 1H NMR (300 MHz, methanol-d4): δ 8.33 - 7.90 (m, 15H), 4.87 - 4.73 (m, 1H), 4.50 - 4.40 (m, 1H), 4.18 (d, J= 9.2 Hz, 1H) 3.99 (s, 3H), 3.76 (d, J= 10.4 Hz, 1H), 3.63 (d, J= 10.4 Hz, 1H), 3.30 - 3.20 (m, 1H), 3.03 - 2.91 (m, 1H), 2.80 - 2.62 (m, 2H), 2.56 - 2.37 (m, 2H), 1.90 (s, 9H).
Step 2: Synthesis of tert-butyl l-(methoxymethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000109_0001
[00303] A solution of tert-butyl 1 -(methoxymethyl)-3-trityl-3,8-diazabicyclo[3.2.1 ]octane-8- carboxylate (600 mg, 1.20 mmol, 1.0 eq) in 1,4-dioxane (13.2 mL) was added IN HC1 (3.9 mL) at room temperature and stirred for 1 h. The reaction mixture was quenched with H2O (20 mL) and adjusted the pH to 8 with saturated NaHCO3 (5 mL). The mixture was extracted with EtOAc (20 mL x 2). The organic layer was washed with water (50 mL) and brine (50 mL), dried over Na2SO4, filtered and concentrated to afford the tert-butyl l-(methoxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (600 mg, crude) as a yellow oil. LCMS: m/z 201.2 (M- 56+H+).
Intermediate 16:
((6-(difluoromethoxy)-2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen- l-yl)ethynyl)triisopropylsilane
Figure imgf000109_0002
Synthetic scheme:
Figure imgf000110_0001
Step 1: Synthesis of 6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5-
((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000110_0002
[00304] To a solution of ((2-fluoro-6-(methoxymethoxy)-8-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (4.0 g, 7.8 mmol, 1.0 eq) in DCM (40 mL) was added HCl/Dioxane (8.0 mL). The reaction mixture was stirred at 30 °C for 3 h. The mixture was diluted with water (20 mL) and extracted with DCM (20 mL x 3). The combined organic phase was dried over Na2SO4 and concentrated to give a residue. The crude product was purified by column chromatography (Petroleum ether: EtOAc = 10: 1) to give 6- fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5-((triisopropylsilyl)ethynyl)naphthalen- 2-ol (3.2 g, 87.6%) as a yellow solid. LCMS: m/z 469.2 (M+H+).
Step 2: Synthesis of ((6-(difluoromethoxy)-2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane
Figure imgf000110_0003
[00305] To a solution of 6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (1.0 g, 2.13 mmol, 1.0 eq) in ACN (12.5 mL) and H2O (12.5 mL) was added KOH (2.39 g, 42.6 mmol, 20.0 eq), diethyl (bromodifluoromethyl)phosphonate (1.14 g, 4.26 mmol, 2.0 eq) at room temperature. The reaction mixture was stirred at room temperature for 30 min. The mixture was diluted with water (10 mL) and extracted with DCM (10 mL x 3). The combined organic phase was dried over Na2SO4 and concentrated to give a residue. The crude product was purified by column chromatography (Petroleum ether: EtOAc = 70: 1) to give ((6-(difluoromethoxy)-2-fluoro-8- (4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (700 mg, 63.4%) as a colorless liquid. LCMS: m/z 519.3 (M+H+).
Intermediate 17: tert-butyl l-methyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Boc
Figure imgf000111_0001
Step 1: Synthesis of tert-butyl l-methyl-3-trityl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000111_0002
[00306] To a solution of tert-butyl 3-trityl-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (3.0 g, 6.6 mmol, 1.0 eq) and TMDEA (1.3 g, 11.2 mmol, 1.7 eq) in THF (40 mL) at 0 °C was added s- BuLi (8.7 mL, 1.3 mol/L in hexane, 11.2 mmol, 1.7 eq). The mixture was stirred at 0 °C for 1 h. Then CH3I (5.6 g, 39.6 mmol, 6.0 eq) was added and the mixture was stirred at 0 °C for 3 h. The reaction mixture was quenched with sat. NH4CI (50 mL). The mixture was diluted with EtOAc (50 mL) and washed with water (50 mL x 2). The organic layer was dried over NaiSO4, filtered, and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc = 20: 1) to give the tert-butyl l-methyl-3-trityl-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (2.0 g, 64.7%) as a white solid. 1H NMR (300 MHz, DMSO-d6): δ 7.67 - 7.00 (m, 15H), 4.02 (d, J = 6.3 Hz, 1H), 2.80 (d, J = 10.5 Hz, 1H), 2.68 (d, J =11.1 Hz, 1H), 2.49 - 2.40 (m, 1H), 2.25 - 2.08 (m, 1H), 2.03 - 1.83 (m, 1H), 1.82 - 1.60 (m, 3H), 1.27 (s, 3H), 1.09 (s, 9H).
Step 2: Synthesis of tert-butyl l-methyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000112_0001
[00307] To a solution of tert-butyl l-methyl-3-trityl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (1.4 g, 3.0 mmol, 1.0 eq) in 1,4-dioxane (30 mL) was added IN HC1 (9 mL, 9.0 mmol, 3.0 eq). The reaction was stirred at room temperature for 1 h. The reaction mixture was quenched with NaHCCh until pH ~ 8. The mixture was extracted with EtOAc (15 mL x 3). The combined organic layers were washed with brine (15 mL), dried over Na2SO4 and concentrated to give tert-butyl l-methyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.5 g, crude) as yellow oil. LCMS: 171.2 (M-56+H+).
Intermediate 18:
N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000112_0002
Step 1: Synthesis of tert-butyl 2-(isopropylcarbamoyl)-6,7-dihydropyrazolo[l,5-a]pyrazine-
5(4H)-carboxylate
Figure imgf000112_0003
[00308] To a solution of 5-(tert-butoxycarbonyl)-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2- carboxylic acid (500 mg, 1.9 mmol, 1.0 eq) in DMF (8.0 mL) was added propan-2-amine (221 mg, 3.7 mmol, 2.0 eq), DIEA (725 mg, 5.6 mmol, 3.0 eq) and HATU (1.1 g, 2.8 mmol, 1.5 eq). The reaction mixture was stirred at room temperature for 2 h under nitrogen atmosphere. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The organic phases were washed with brine (20 mL x 3), dried with Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (DCM: MeOH = 40: 1) to give tert-butyl 2-(isopropylcarbamoyl)-6,7-dihydropyrazolo[l,5-a]pyrazine-5(4H)-carboxylate (520 mg, 90.1%) as a white solid. 1H NMR (400 MHz, CDCl3): δ 6.70 - 6.63 (m, 1H), 6.59 (s, 1H), 4.65 (s, 2H), 4.30 - 4.20 (m, 1H), 4.16 (t, J= 5.2 Hz, 1H), 3.89 (t, J= 5.2 Hz, 2H), 1.49 (s, 9H), 1.24 (d, J= 6.4 Hz, 6H). LCMS: 309.2 (M+H+).
Step 2: Synthesis of N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000113_0001
[00309] To a solution of tert-butyl 2-(isopropylcarbamoyl)-6,7-dihydropyrazolo[l,5- a]pyrazine-5(4H)-carboxylate (520 mg, 1.7 mmol, 1.0 eq) in DCM (4 mL) was added TFA (2 mL). The reaction mixture was stirred at 25 °C for 2 h. The reaction mixture was concentrated under reduced pressure to give N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2- carboxamide (350 mg, crude) as a yellow solid.
LCMS: 209.2 (M+H+).
Intermediate 19:
4-bromo-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5-(trifluoromethyl)-lH-indazole-3- carbonitrile
Synthetic scheme:
Figure imgf000113_0002
Figure imgf000114_0001
Step 1: Synthesis of 4-bromo-3-iodo-6-methyl-5-(trifluoromethyl)-lH-indazole
Figure imgf000114_0002
[00310] To a solution of 4-bromo-6-methyl-5-(trifluoromethyl)-lEI-indazole (2.6 g, 9.4 mmol, 1.0 eq) in DMF (50 mL) was added KOH (2.1 g, 37.4 mmol, 4.0 eq) and E (7.1 g, 28.1 mmol, 3.0 eq). The reaction mixture was stirred at room temperature for 12 h. The mixture was diluted with aqueous sodium thiosulfate solution (60 mL) and extracted with EtOAc (60 mL x 3). The organic phase was washed with brine (50 mL), dried over Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc = 5:1) to give 4-bromo-3-iodo-6-methyl-5-(trifluoromethyl)-lH-indazole (2.0 g, 52.9%) as a yellow solid. 1H NMR (300 MHz, CDCl3): 3 10.83 (brs, 1H), 7.37 (s, 1H), 2.67 - 2.60 (m, 3H). LCMS: 404.8, 406.9 (M+H+).
Step 2: Synthesis of 4-bromo-6-methyl-5-(trifluoromethyl)-lH-indazole-3-carbonitrile
Figure imgf000114_0003
[00311] To a solution of 4-bromo-3-iodo-6-methyl-5-(trifluoromethyl)-lH-indazole (2.0 g, 5.0 mmol, 1.0 eq) in DMF (40 mL) was added Zn(CN)2 (1.2 g, 9.9 mmol, 2.0 eq), Zn (194 mg, 3.0 mmol, 0.6 eq), Cui (943 mg, 5.0 mmol, 1.0 eq) and Pd(dppf)C12 (362 mg, 0.50 mmol, 0.1 eq). The reaction mixture was stirred at 100 °C for 15 h under nitrogen atmosphere. The mixture was diluted with aqueous sodium thiosulfate solution (50 mL) and extracted with EtOAc (50 mL x 3). The organic phase was washed with brine (50 mL), dried over Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 3: 1) to give 4-bromo-6-methyl-5-(trifluoromethyl)-lH-indazole-3-carbonitrile (200 mg, 13.3%) as a white solid. 1H NMR (400 MHz, DMSO-d6): 8 14.85 (brs, 1H), 7.79 (s, 1H), 2.75 - 2.57 (m, 3H). LCMS: 301.9, 304.0 (M-H ).
Step 3: Synthesis of 4-bromo-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5-(trifluoromethyl)- lH-indazole-3-carbonitrile
Figure imgf000115_0003
[00312] To a solution of 4-bromo-6-methyl-5-(trifluoromethyl)-lH-indazole-3-carbonitrile
(320 mg, 1.1 mmol, 1.0 eq) and PTSA (18 mg, 0.11 mmol, 0.1 eq) in DCM (6 mL) was added DHP (133 mg, 1.6 mmol, 1.5 eq) in MeCN (1.5 mL). The reaction mixture was stirred at room temperature for 12 h. The mixture was diluted with water (20 mL) and extracted with EtOAc (20 mL x 3). The organic phase was washed with brine (20 mL), dried over Na2SO4, fdtered and concentrated to give a residue. The residue was purified by prep-TLC (petroleum ether : EtOAc = 5: 1) to give 4-bromo-6-methyl- l-(tetrahydro-2H-pyran-2-yl)-5-(trifluorom ethyl)- IH-indazole- 3 -carbonitrile (250 mg, 61.2%) as a white solid. 1H NMR (300 MHz, CDCl3): δ 7.57 (s, 1H), 5.79 (dd, J= 7.8, 3.0 Hz, 1H), 3.94 - 3.82 (m, 1H), 3.81 - 3.68 (m, 1H), 2.71-2.64 (m, 3H), 2.56 - 2.40 (m, 1H), 2.26 - 2.06 (m, 2H), 1.90 - 1.65 (m, 3H).
Intermediate 20:
Synthesis scheme:
Figure imgf000115_0001
Step 1: Synthesis of ethyl (S)-2-(fluoromethylene)-5-oxotetrahydro-lH-pyrrolizine-7a(5H)- carboxylate
Figure imgf000115_0002
[00313] To a solution of 2-((fluoromethyl)sulfonyl) pyridine (4.6 g, 26.3 mmol, 1.1 eq) in THF (260 mL) under nitrogen was added KHMDS (31 mL, 30.77 mmol, 1.3 eq) at -78 °C. After 30 min, ethyl (S)-2,5-dioxotetrahydro-lH-pyrrolizine-7a(5H)-carboxylate (5.0 g, 23.67 mmol, 1.0 eq) in THF (130 mL) was added slowly at -78 °C. After 3 h, the reaction system was warmed to room temperature and stirred overnight. Upon completion, the reaction was added saturated aqueous ammonium chloride solution (40 mL), followed by 3M HC1 (80 mL). The mixture was stirred for 1 h at room temperature, diluted with water (50 mL), extracted with EtOAc (100 mL x 3), the combined organic layer was washed with saturated brine (50 mL) and dried over Na2SO4, filtered and concentrated to give a residue, which was purified by silica gel column chromatography (Petroleum ether: EtOAc = 5: 1) to give ethyl (S)-2-(fluoromethylene)-5- oxotetrahydro-lH-pyrrolizine-7a(5H)-carboxylate (2.4 g, 44.6%) as a yellow oil. LCMS: m/z 228.1 (M+H+).
Step 2: Synthesis of (S)-(2-(fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol
Figure imgf000116_0001
[00314] To a solution of ethyl (S)-2-(fluoromethylene)-5-oxotetrahydro-lH-pyrrolizine- 7a(5H)-carboxylate (2.8 g, 12.32 mmol, 1.0 eq) in THF (233 mL) was added DIBAL-H (1.5 M, 83.8 mL, 125.68 mmol, 10.2 eq) at 0 °C. The reaction mixture was stirred at room temperature for 1 h. Upon completion, the reaction system was added NazSOv l OlUO (5 g). The solid was filtered and concentrated to give a residue, which was purified by silica gel column chromatography (DCM: MeOH = 8: 1) to give (S)-(2-(fluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methanol (800 mg, 37.9%) as a yellow oil. LCMS: m/z 172.2 (M+H+).
Intermediate 21:
Synthetic scheme:
Figure imgf000117_0001
Step 1: Synthesis of tert-butyl (2S)-2-(hydroxymethyl)-5-methoxypyrrolidine-l-carboxylate
Figure imgf000117_0002
[00315] To a solution of 1 -(tert-butyl) 2-methyl (S)-5-oxopyrrolidine-l,2-dicarboxylate (100.0 g, 411.1 mmol, 1.0 eq) in DCM (1.0 L) was added DIBAL-H (1.5M, 1.1 L, 1.6 mol, 4.0 eq) dropwise at -78 °C. The reaction mixture was stirred at room temperature for 2 h. The mixture was quenched by addition of MeOH (1.0 L) at 0 °C. The resulting white emulsion was poured into ice HC1 (2 M, 1.0 L) solution at 0 °C. The mixture was stirred for 15 h at room temperature. The layers were separated. The aqueous layer was extracted with DCM (1.0 L x 2). The combined organic layers were washed with brine (1.0 L), dried over NaiSO4, fdtered off and concentrated to give a residue. The residue was purified by silica gel chromatography (petroleum ether: EtOAc = 4: 1) to give tert-butyl (2S)-2-(hydroxymethyl)-5-methoxypyrrolidine-l- carboxylate (35.0 g, 36.8%) as a colorless oil. 1H NMR (300 MHz, CDCl3): d 4.29 (brs, 1H), 4.07 - 3.46 (m, 4H), 3.43 - 3.20 (m, 3H), 2.14 - 1.67 (m, 4H), 1.49 (s, 9H).
Step 2: Synthesis of tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-5- methoxypyrrolidine-l-carboxylate
Figure imgf000117_0003
[00316] To a solution of tert-butyl (2S)-2-(hydroxymethyl)-5-methoxypyrrolidine-l - carboxylate (35.0 g, 151.3 mmol, 1.0 eq) in DCM (350 mL) was added Imidazole (15.5 g, 227.0 mmol, 1.5 eq) and TBSC1 (27.4 g, 181.6 mmol, 1.2 eq) in portions at 0 °C. The reaction was stirred at room temperature for 15 h under N2. The reaction was quenched with water (300 mL) and separated. The aqueous layer was extracted with DCM (300 mL x 2). The combined organic layers were washed with brine (300 mL), dried over Na2SO4, filtered off and concentrated to give a crude. The crude was purified by silica gel chromatography (petroleum ether: EtOAc = 5: 1) to give tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-5-methoxypyrrolidine-l- carboxylate (40.0 g, 76.5%) as a colorless oil. XH NMR (400 MHz, CDCl3): δ 5.53 - 4.86 (m, 1H), 4.04 - 3.20 (m, 6H), 2.25 - 1.68 (m, 4H), 1.48 (s, 9H), 0.88 (s, 9H), 0.05 (s, 6H).
Step 3: Synthesis of tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-5- cyanopyrrolidine-l-carboxylate
Figure imgf000118_0001
[00317] To a solution of tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-5- m ethoxypyrrolidine- 1 -carboxylate (40.0 g, 115.8 mmol, 1.0 eq) in DCM (400 mL) was added TMSOTf (3.9 g, 17.4 mmol, 0.15 eq) and TMSCN (17.2 g, 173.6 mmol, 1.5 eq) dropwise at -78 °C. The reaction was stirred at -78 °C for 1 h under N2. The reaction was quenched with sat. NaHCCh aqueous solution (200 mL) at -78 °C, and separated. The aqueous layer was extracted with DCM (200 mL x 2). The combined organic layers were washed with brine (200 mL), dried over Na2SO4, fdtered off and concentrated to give a crude. The crude was purified by silica gel chromatography (petroleum ether: EtOAc = 10: 1) to give tert-butyl (2S)-2-(((tert- butyldimethylsilyl)oxy)methyl)-5-cyanopyrrolidine-l-carboxylate (20.0 g, 50.8%) as a colorless oil.1H NMR (300 MHz, CDCL): d 4.55 - 4.40 (m, 1H), 4.05 - 3.52 (m, 3H), 2.52 - 2.00 (m, 4H), 1.52 (s, 9H), 0.87 (s, 9H), 0.03 (s, 6H).
Step 4: Synthesis of l-(tert-butyl) 2-methyl (5S)-5-(hydroxymethyl)pyrrolidine-l,2- dicarboxylate
Figure imgf000118_0002
[00318] To a solution of tert-butyl (2S)-2-(((tert-butyldimethylsilyl)oxy)methyl)-5- cyanopyrrolidine-1 -carboxylate (20.0 g, 58.7 mmol, 1.0 eq) in MeOH (200 mL) was added K2CO3 (20.3 g, 146.8 mmol, 2.5 eq). The reaction was stirred at room temperature for 3 h under N2. The reaction mixture was adjusted pH ~ 2 with 10% HC1 aqueous solution. The resulting mixture was stirred at room temperature for 15 h. The mixture was extracted with EtOAc (200 mL x 3). The combined organic layers were washed with brine (200 mL), dried over Na2SO4, fdtered off and concentrated to give a crude. The crude was purified by silica gel chromatography (petroleum ether: EtOAc = 5: 1) to give 1 -(tert-butyl) 2-methyl (5S)-5- (hydroxymethyl)pyrrolidine-l,2-dicarboxylate (10.0 g, 65.6%) as a colorless oil. 1H NMR (300 MHz, CDCL): 34.40 - 4.00 (m, 2H), 3.72 (s, 3H), 3.69 - 3.57 (m, 2H), 2.34 - 2.03 (m, 2H), 1.98 - 1.84 (m, 1H), 1.72 - 1.58 (m, 1H), 1.41 (s, 9H). LCMS: 282.2 (M+Na+).
Step 5: Synthesis of l-(tert-butyl) 2-methyl (5S)-5-(((tert-butyldiphenylsilyl)oxy)methyl) pyrrolidine -1,2-dicarboxylate
Figure imgf000119_0001
[00319] To a solution of 1 -(tert-butyl) 2-methyl (5S)-5-(hydroxymethyl)pyrrolidine-l,2- dicarboxylate (10.0 g, 38.6 mmol, 1.0 eq) in DCM (100 mL) was added Imidazole (3.9 g, 57.8 mmol, 1.5 eq) and TBDPSC1 (12.7 g, 46.3 mmol, 1.2 eq) dropwise at 0 °C. The reaction was stirred at room temperature for 15 h under N2. The reaction was quenched with water (300 mL) and separated. The aqueous layer was extracted with DCM (300 mL x 2). The combined organic layers were washed with brine (300 mL), dried over J feSO4, fdtered off and concentrated to give a crude. The crude was purified by silica gel chromatography (petroleum ether: EtOAc = 5: 1) to give 1 -(tert-butyl) 2-methyl (5 S)-5-(((tert-butyldiphenylsilyl)oxy)methyl)pyrrolidine- 1,2- dicarboxylate (10.0 g, 52.1%) as a colorless oil. LCMS: 398.2 (M-100+H+).
Step 6: Synthesis of l-(tert-butyl) 2-methyl (2S,5S)-5-(((tert-butyldiphenylsilyl)oxy)methyl)- 2-(2-(chloromethyl)allyl)pyrrolidine-l,2-dicarboxylate
Figure imgf000119_0002
[00320] To a solution of 1 -(tert-butyl) 2-methyl (5S)-5-(((tert- butyldiphenylsilyl)oxy)methyl)pyrrolidine-l,2-dicarboxylate (10.0 g, 20.1 mmol, 1.0 eq) in THF (100 mL) was added HMPA (18.0 g, 100.5 mmol, 5.0 eq) and LDA (2M) (20.1 mL, 40.2 mmol, 2.0 eq) dropwise at -78 °C. Then the reaction mixture was stirred at -78 °C for 30 min. The mixture was added 3-chloro-2-(chloromethyl)prop-l-ene (5.0 g, 40.2 mmol, 2.0 eq) dropwise at - 78 °C and stirred at room temperature for 15 h. The reaction was quenched with sat. NH4CI solution (100 mL) at 0 °C and separated. The aqueous layer was extracted with EtOAc (100 mL x 2). The combined organic layers were washed with brine (100 mL), dried over Na2SO4, filtered off and concentrated to give a crude. The crude was purified by silica gel chromatography (petroleum ether: EtOAc = 5: 1) to give 1 -(tert-butyl) 2-methyl (2S,5S)-5-(((tert- butyldiphenylsilyl)oxy)methyl)-2-(2-(chloromethyl)allyl)pyrrolidine-l,2-dicarboxylate (4.0 g, 34.0%) as a colorless oil. LCMS: 486.2 (M-100+H+).
Step 7: Synthesis of methyl (5S,7aS)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-2-methylene tetrahydro-lH-pyrrolizine-7a(5H)-carboxylate
Figure imgf000120_0001
[00321] To a solution of 1 -(tert-butyl) 2-methyl (2S,5S)-5-(((tert- butyldiphenylsilyl)oxy)methyl)-2-(2-(chloromethyl)allyl)pyrrolidine-l,2-dicarboxylate (4.0 g, 6.8 mmol, 1.0 eq) in DCM (40 mL) was added TFA (7.8 g, 68.2 mmol, 10.0 eq). Then the reaction mixture was stirred at room temperature for 2 h. The mixture was concentrated to give a residue. The residue was dissolved in MeOH (40 mL). The mixture was added K2CO3 until pH > 7. The reaction was stirred at room temperature for 40 min. The reaction was quenched with water (40 mL). The resulting mixture was extracted with DCM (40 mL x 3). The combined organic layers were washed with brine (40 mL), dried over Na2SO4, filtered off and concentrated to give a crude. The crude was purified by silica gel chromatography (petroleum ether: EtOAc = 5: 1) to give methyl (5S,7aS)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-2-methylenetetrahydro- lH-pyrrolizine-7a(5H)-carboxylate (2.0 g, 65.1%) as a yellow oil. 1H NMR (400 MHz, CDCl3): d 7.68 (t, J= 6.8 Hz, 4H), 7.50 - 7.32 (m, 6H), 4.97 - 4.82 (m, 2H), 3.79 - 3.60 (m, 5H), 3.55 (t, J = 6.8 Hz, 1H), 3.24 (d, J = 14.8 Hz, 1H), 2.99 - 2.78 (m, 2H), 2.47 - 2.30 (m, 2H), 2.10 - 1.96 (m, 1H), 1.80 - 1.63 (m, 2H), 1.05 (s, 9H). LCMS: 450.2 (M+H+).
Step 8: Synthesis of ((5S,7aS)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-2-methylene tetra hydro-lH-pyrrolizin-7a(5H)-yl)methanol
Figure imgf000121_0001
[00322] To a solution of methyl (5S,7aS)-5-(((tert-butyldiphenylsilyl)oxy)methyl)-2- methylenetetrahydro-lH-pyrrolizine-7a(5H)-carboxylate (2.0 g, 4.4 mmol, 1.0 eq) in THF (20 mL) was added LAH (4.4 mL, 1 M in THF, 4.4 mmol, 1.0 eq) at 0 °C. Then the reaction mixture was stirred at room temperature for 2 h. The mixture was quenched with water (0.17 mL), 15% NaOH aqueous solution (0.17 mL) and water (0.51 mL) in turns at 0 °C. The resulting mixture was dried over Na2SO4, filtered off and concentrated to give a crude. The crude was purified by silica gel chromatography (petroleum ether: EtOAc = 2: 1) to give ((5S,7aS)-5-(((tert- butyldiphenylsilyl)oxy)methyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (1.0 g, 53.2%) as a colorless oil. 1H NMR (400 MHz, CDCL): 3 7.75 - 7.62 (m, 4H), 7.48 - 7.34 (m, 6H), 4.96 - 4.83 (m, 2H), 3.67 3.47 (m, 3H), 3.42 - 3.28 (m, 1H), 3.21 (s, 2H), 3.06 - 2.80 (m, 2H), 2.42 - 2.24 (m, 2H), 2.07 - 1.88 (m, 2H), 1.76 - 1.63 (m, 2H), 1.06 (s, 9H). LCMS: 422.2 (M+H+).
Intermediate 22:
Synthetic scheme:
Figure imgf000121_0002
Step 1 Synthesis of 3-((diphenylmethylene)amino)-7-fluoro-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl trifluoromethanesulfonate
Figure imgf000122_0001
[00323] To a solution of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diyl bis(trifluoromethanesulfonate) (4.0 g, 6.4 mmol, 1.0 eq) in toluene (40 mL) was added diphenylmethanimine (2.3 g, 12.8 mmol, 2.0 eq), CS2CO3 (6.3 g, 19.2 mmol, 3.0 eq), Pd2(dba)s (588 mg, 0.64 mmol, 0.10 eq) and Xantphos (744 mg, 1.3 mmol, 0.20 eq). The reaction mixture was stirred at 100 °C for 2 h under N2. The reaction mixture was partitioned between EtOAc (40 mL) and H2O (40 mL). The layers were separated. The aqueous layer was extracted with EtOAc (40 mL x 3). The combined organic layers were washed with brine (30 mL), dried over Na2SO4 and concentrated to a crude. The crude was purified by silica gel column chromatography (Petroleum ether: EtOAc = 100: 1) to give 3-((diphenylmethylene)amino)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl trifluoromethanesulfonate (2.0 g, 47.6%) as a yellow solid.1H NMR (400 MHz, CDCl3): 8 7.84 - 7.79 (m, 4H), 7.58 - 7.48 (m, 6H), 7.29 - 7.27 (m, 1H), 7.19 - 7.17 (m, 2H), 7.09 - 7.02 (m, 1H), 1.31 - 1.12 (m, 21H).
Step 2: Synthesis of N-(6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5-
((triisopropylsilyl)ethynyl)naphthalen-2-yl)-l,l-diphenylmethanimine
Figure imgf000122_0002
[00324] To a solution of 3-((diphenylmethylene)amino)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl trifluoromethanesulfonate (1.0 g, 1.5 mmol, 1.0 eq) in toluene (10 mL) was added KO Ac (450 mg, 4.5mmol, 3.0 eq) and Pd(dppf)C12 (222 mg, 0.31 mmol, 0.2 eq) at room temperature. The reaction mixture was stirred at 110 °C for 18 h under nitrogen atmosphere. The mixture was filtered, and the filtrate was concentrated to give a residue. The residue was partitioned between EtOAc (10 mL) and H2O (10 mL). The layers were separated. The aqueous layer was extracted with EtOAc (10 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4 and concentrated to a crude. The crude was purified by silica gel column chromatography (Petroleum ether : EtOAc = 100 : 1) to give N-(6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5- ((triisopropylsilyl)ethynyl)naphthalen-2-yl)-l,l-diphenylmethanimine (600 mg, 62.1%) as a yellow solid. 1H NMR (400 MHz, CDCl3): δ 7.49 (d, J= 2.8 Hz, 2H), 7.58 - 7.41 (m, 4H), 7.29
(s, 1H), 7.25 - 7.06 (m, 7H), 1.26 (s, 21H), 1.15 (s, 12H).
Intermediate 23: ethyl 2-(6-fluoro-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-5-
((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate
Figure imgf000123_0003
Figure imgf000123_0002
Step 1: Synthesis of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diyl bis(trifluoromethanesulfonate)
Figure imgf000123_0001
[00325] To a solution of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diol (3.0 g, 8.4 mmol, 1.0 eq) in DCM (60 mL) was added DIEA (6.5 g, 50.4 mmol, 6.0 eq) and Tf20 (9.5 g,
33.6 mmol, 4.0 eq) at 0 °C under N2 atmosphere. The reaction mixture was stirred at 0 °C for 2 h. The mixture was diluted with water (20 mL) and extracted with DCM (20 mL x 3). The combined organic phase was dried over Na2SO4 and concentrated to give a residue. The crude product was purified by column chromatography (Petroleum ether: EtOAc = 20: 1) to give 7- fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diyl bi s(trifluorom ethanesulf onate) (4.7 g, 89.9%) as a yellow solid. 1H NMR (300 MHz, DMSO-c/e): 3 8.55 (d, J= 2.4 Hz, 1H), 8.50-8.30 (m, 1H), 8.12 (d, J = 2.1 Hz, 1H), 7.86 (t, J= 9.0 Hz, 1H), 3.34 (s, 3H), 1.12 (s, 18H).
Step 2: Synthesis of ethyl 2-(6-fluoro-4-(((trifluoromethyl)sulfonyl)oxy)-5- ((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate
Figure imgf000124_0001
[00326] To a solution of 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalene-l,3-diyl bis(trifluoromethanesulfonate) (2.0 g, 3.2 mmol, 1.0 eq) and potassium 3-ethoxy-3- oxopropanoate (817 mg, 4.8 mmol, 1.5 eq) in Xylene (34.3 mL) was added DMAP (39 mg, 0.32 mmol, 0.1 eq) at room temperature under N2 atmosphere. The reaction mixture was stirred at room temperature for 5 min. Allylpalladium(II) Chloride Dimer (23 mg, 0.064 mmol, 0.02 eq) and BINAP (118 mg, 0.19 mmol, 0.06 eq) were added, then the reaction mixture was stirred at 140 °C for 5 h. The mixture was diluted with water (20 mL) and extracted with EtOAc (20 mL x 3). The combined organic phase was dried over Na2SO4 and concentrated to give a residue. The crude product was purified by column chromatography (Petroleum ether: EtOAc = 30: 1) to give ethyl 2-(6-fluoro-4-(((trifluoromethyl)sulfonyl)oxy)-5-((triisopropylsilyl)ethynyl)naphthalen-2- yl)acetate (1.0 g, 55.7%) as a yellow liquid. LCMS: m/z 561.2 (M+H+).
Step 3: Synthesis of ethyl 2-(6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5- ((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate
Figure imgf000124_0002
[00327] To a solution of ethyl 2-(6-fluoro-4-(((trifluoromethyl)sulfonyl)oxy)-5- ((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate (500 mg, 0.89 mmol, 1.0 eq), B2Pin2 (452 mg, 1.78 mmol, 2.0 eq) and KO Ac (262 mg, 2.67 mmol, 3.0 eq) in PhMe (5.0 mL) was added Pd(dppf)C12 (65 mg, 0.089 mmol, 0.1 eq) at room temperature under N2 atmosphere The reaction mixture was stirred at 130 °C for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by column chromatography (Petroleum ether: EtOAc = 50: 1) to give ethyl 2-(6-fluoro-4-(4, 4,5,5- tetramethyl-l,3,2-dioxaborolan-2-yl)-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate (450 mg, 93.9%) as a yellow liquid. 1H NMR (400 MHz, CDCl3): d 7.80-7.60 (m, 3H), 7.23 (d, J = 8.8 Hz, 1H), 4.15 (q, J= 7.2 Hz, 2H), 3.73 (s, 2H), 1.30-1.20 (m, 18H), 1.15 (s, 18H).
Intermediate 24:
(S)-(2-(difluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol
Figure imgf000125_0001
Step 1: Synthesis of ethyl (S)-2-(difluoromethylene)-5-oxotetrahydro-lH-pyrrolizine-
7 a(5H)-carboxylate
Figure imgf000125_0002
[00328] To a solution of ethyl (S)-2,5-dioxotetrahydro-lH-pyrrolizine-7a(5H)-carboxylate (500 mg, 2.4 mmol, 1.0 eq) and HMPT (1.2 g, 7.1 mmol, 3.0 eq) in THF (8 mL) was added CF2Br2 (1.8 g, 7.1 mmol, 3.0 eq) at 0 °C under nitrogen atmosphere. The reaction mixture was warmed to room temperature and Zn (465 mg, 7.1 mmol, 3.0 eq) was added. The reaction was stirred at 80 °C for 3 h under nitrogen atmosphere. The mixture was diluted with water (20 mL) and extracted with EtOAc (20 mL x 3). The organic phase was washed with brine (20 mL), dried with Na2SO4, fdtered and concentrated to give a crude. The crude was purified by silica gel column chromatography (dichloromethane : ethyl acetate = 8 : 1) to give ethyl (S)-2- (difluoromethylene)-5-oxotetrahydro-lH-pyrrolizine-7a(5H)-carboxylate (160 mg, 27.6%) as yellow oil. XH NMR (300 MHz, CDCl3): d 4.41 - 4.39 (m, 1H), 4.22 (q, J= 7.2 Hz, 2H), 3.81 - 3.65 (m, 1H), 3.19 -3.05 (m, 1H), 2.85 - 2.73 (m, 1H), 2.68 - 2.65 (m, 1H), 2.53 - 2.35 (m, 2H), 2.22 - 2.07 (m, 1H), 1.29 (t, J= 7.2 Hz, 3H). LCMS: 246.1 (M+H+).
Step 2: Synthesis of (S)-(2-(difluoromethylene)tetrahydro-lH-pyirolizin-7a(5H)- yl)methanol
Figure imgf000126_0001
[00329] To a solution of ethyl (S)-2-(difluoromethylene)-5-oxotetrahydro-lH-pyrrolizine- 7a(5H)-carboxylate (160 mg, 0.65 mmol, 1.0 eq) in THF (3 mL) was added DIBAL-H (4.4 mL, 6.5 mmol, 10.0 eq, 1.5 M in toluene) at 0 °C under nitrogen atmosphere. The reaction mixture was stirred at room temperature for 1 h. The mixture was quenched with Na2SO4’10H2O, filtered and concentrated to give (S)-(2-(difluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)- yl)methanol (80 mg, 65.0%) as a colorless oil. 1H NMR (400 MHz, CDCl3): 5 3.65 - 3.56 (m, 1H), 3.39 - 3.19 (m, 3H), 3.12 - 3.02 (m, 1H), 2.69 - 2.58 (m, 1H), 2.47 - 2.37 (m, 1H), 2.36 - 2.28 (m, 1H), 1.99 - 1.92 (m, 1H), 1.91 - 1.84 (m, 1H), 1.83 - 1.76 (m, 1H), 1.75 - 1.69 (m, 1H). LCMS: 190.1 (M+H+).
Example 1
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,6,8-trifluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5-fluoronaphthalen-2-ol
Figure imgf000127_0001
Step 1: Synthesis of tert-butyl 3-(2-chloro-5,6,8-trifluoroquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000127_0002
[00330] To a solution of 2,4-dichloro-5,6,8-trifluoroquinazoline (300 mg, 1.19 mmol, 1.0 eq) in DCM (5 mL) was added DIEA (461 mg, 3.57 mmol, 3.0 eq) and dropwise a solution of tert butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (232 mg, 1.19 mmol, 1.0 eq) in DCM (2 mb) stirring at -60 °C under nitrogen atmosphere. The mixture was stirred at -60 °C for 2 h under nitrogen atmosphere. The reaction mixture was concentrated under reduced pressure to give a crude product, which was purified by silica gel column chromatography (petroleum ether: EtOAc = 10: 1) to afford tert-butyl 3-(2-chloro-5,6,8-trifluoroquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (300 mg, 58.9%) as a white solid. 1H NMR (300 MHz, CDC13): 8 7.40 - 7.28 (m, 1H), 4.43 - 4.13 (m, 2H), 4.12 - 3.97 (m, 2H), 3.59 - 3.44 (m, 2H), 1.89 - 1.78 (m, 2H), 1.70 - 1.55 (m, 2H), 1.44 (s, 9H). LCMS: m/z 429.1 (M+H+).
Step 2: Synthesis of tert-butyl 3-(5,6,8-trifluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000128_0001
[00331] To a solution of 2,4-dichloro-5,6,8-trifluoroquinazoline (280 mg, 0.65 mmol, 1.0 eq) in DMSO (3 mL) was added (2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)m ethanol (156 mg, 0.98 mmol, 1.5 eq) and KF (304 mg, 5.23 mmol, 8.0 eq). The mixture was stirred at 120 °C for 2 h. The reaction mixture was diluted with H2O (5 mL) and extracted with EtOAc (5 mL x 3). The organic layers were washed with brine (20 mL), dried over Na2SO4, fdtered, and concentrated under reduced pressure to give a crude product, which was purified by silica gel column chromatography (DCM: MeOH = 40: 1) to afford tert-butyl 3-(5,6,8-trifluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (150 mg, 41.6%) as a white solid. 1H NMR (400 MHz, CDCl3): 8 7.35 - 7.28 (m, 1H), 5.30 (d, J= 54 Hz, 1H), 4.43 - 4.19 (m, 4H), 4.17 - 3.98 (m, 3H), 3.55 - 3.15 (m, 5H), 3.06 - 2.95 (m, 1H), 2.37 - 2.29 (m, 1H), 2.24 - 2.16 (m, 1H), 2.06 - 1.95 (m, 4H), 1.93 - 1.87 (m, 2H), 1.80 - 1.71 (m, 2H), 1.50 (s, 9H). LCMS: m/z 552.3 (M+H+). Step 3: Synthesis of tert-butyl 3-(7-bromo-5,6,8-trifluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane-8- carboxylate
Figure imgf000129_0001
[00332] To a solution of tert-butyl 3-(5,6,8-trifluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (150 mg, 0.27 mmol, 1.0 eq) in THF (3 mL) was added LDA (2 M in THF, 0.27 mL, 0.54 mmol, 2.0 eq) at -65 °C under nitrogen atmosphere. The mixture was stirred at -65 °C for 30 min. Then l,2-dibromo-l,l,2,2-tetrafluoroethane (105 mg, 0.41 mmol, 1.5 eq) was added. The mixture was stirred at room temperature for another 1 h, then quenched with H2O (5 mL) and extracted with EtOAc (5 mL x 3). The organic layers were combined and washed with brine (5 mL), dried over NaiSO4, filtered and concentrated under reduced pressure to give crude product, which was purified by silica gel column chromatography (DCM: MeOH = 40: 1) to provide tert-butyl 3-(7- bromo-5 , 6, 8-trifluoro-2-(((2R, 7aS)-2-fluorotetrahy dro- 1 H-pyrrolizin-7 a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (70 mg, 40.9%) as a white solid. 1H NMR (400 MHz, CDCl3): 5 5.28 (d, J= 53.6 Hz, 1H), 4.39 - 3.99 (m, 6H), 3.53 - 3.41 (m, 3H), 3.31 - 3.15 (m, 2H), 3.03 - 2.91 (m, 1H), 2.31 - 1.69 (m, 10H), 1.50 (s, 9H). LCMS: m/z 630.2, 632.2 (M+H+).
Step 4: Synthesis of tert-butyl 3-(5,6,8-trifluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen -1-yl) -2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000129_0002
[00333] To a solution of tert-butyl 3-(7-bromo-5,6,8-trifluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2 l ]octane-8-carboxylate (70 mg, 0.1 1 mmol, 1 .0 eq) in dioxane (2 mL) and H2O (0.5 mL) was added 2-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-4,4,5,5-tetramethyl-l,3,2- dioxaborolane (55 mg, 0.17 mmol, 1.5 eq), K2CO3 (46 mg, 0.33 mmol, 3.0 eq) and Pd(PPh3)4 (13 mg, 0.01 mmol, 0.1 eq) under N2 . The mixture was stirred at 100 °C for 5 h. The reaction mixture was diluted with H2O (5 mL) and extracted with EtOAc (5 mL x 3). The organic layers were washed with brine (100 mL), dried over Na2SO4, filtered, and concentrated under reduced pressure to give a residue. The residue was purified by silica gel column chromatography (DCM: MeOH = 20: 1) to afford tert-butyl 3-(5,6,8-trifluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (54 mg, 64.3%) as a white solid. LCMS: m/z 756.0 (M+H+).
Step 5: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,6,8-trifluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)quinazolin-7-yl)-5-fluoronaphthalen-2- ol
Figure imgf000130_0001
[00334] To a solution of tert-butyl 3-(5,6,8-trifluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (54 mg, 0.07 mmol) in DCM (2 mL) was added HC1 in dioxane (4 M, 1 mL). The reaction was stirred at room temperature for 1 h. The mixture was concentrated under reduced pressure, then diluted with MeOH (2 mL). The solution pH was adjusted to around 9 by adding aq. NaHCCh (2 mL). Then the mixture was concentrated under reduced pressure and diluted with solvent mixture of DCM and MeOH (15: 1, 5 mL), filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (0.1% FA in H2O) to afford 4-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-5,6,8-trifluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)quinazolin-7-yl)-5-fluoronaphthalen-2-ol (14.8 mg, 31.5%) formic salt as a white solid. 1H NMR (400 MHz, DMSO-d6): δ 8.22 (bs, 1H), 7.69 (d, J= 8.4 Hz, 1H), 7.49 - 7.37 (m, 2H), 7.18 (d, J = 2.4 Hz, 1H), 7.05 (m, 1H), 5.28 (d, J= 53.6 Hz, 1H), 4.13 - 4.05 (m, 2H), 4.03 - 3.95 (m, 2H), 3.75 - 3.61 (m, 2H), 3.44 (m, 2H), 3.14 - 3.04 (m, 2H), 3.01 (s, 1H), 2.83 (m, 1H), 2.19 - 1.95 (m, 3H), 1.89 - 1.63 (m, 7H). LCMS: m/z 612.0 (M+H +).
Example 2
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-7-yl)-5-fluoronaphthalen-2-ol
Figure imgf000131_0001
Step 1 : Synthesis of tert-butyl 3-(2-chloro-6,8-difluoro-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000132_0001
[00335] To a solution of 2,4-dichloro-6,8-difluoro-5-methylquinazoline (100 mg, 0.4 mmol, 1.0 eq) and DIEA (155 mg, 1.2 mmol, 3.0 eq) in DCM (2 mL) was added tert-butyl (lR,5S)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (85 mg, 0.4 mmol, 1.0 eq) at -40 °C under nitrogen atmosphere. The reaction was stirred at the same temperature for 2 h, then concentrated to give a residue. The residue was partitioned between DCM (10 mL) and water (5 mL). The layers were separated. The aqueous layer was extracted with DCM (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by preparation TLC (petroleum ether/EtOAc = 1 : 1) to afford the desired product, tert-butyl 3-(2-chloro-6,8-difluoro-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (130 mg, 76.2%) as a yellow solid. LCMS: m/z 425.2 (M+H+).
Step 2: Synthesis of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8- carboxylate
Figure imgf000132_0002
[00336] To a mixture of tert-butyl 3-(2-chloro-6,8-difluoro-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (152 mg, 0.36 mmol, 1.0 eq) and ((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (68 mg, 0.43 mmol, 1.2 eq) in THF (0.8 mL) in DMF (0.8 mL) were added DABCO (40 mg, 0.36 mmol, 1 .0 eq) and CS2CO3 (350 mg, 1 .07 mmol, 3.0 eq) under nitrogen atmosphere. The solution was stirred at room temperature for 15 h. H2O (3 mL), was added and the mixture was extracted with EtOAc (3 mL x 3). The combined organic layers were washed with H2O (3 mL), brine (3 mL), dried over Na2SO4 and evaporated to dryness. The crude residue was purified by silica gel column chromatography (DCM/MeOH = 15: 1) to give the desired product, tert-butyl (lR,5S)-3-(6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (147 mg, 74.6%) as a white solid. LCMS: m/z 548.3 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8- carboxylate
Boc
Figure imgf000133_0001
[00337] To a solution of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (120 mg, 0.22 mmol, 1.0 eq) in THF (3 mL) was added LDA (0.2 mL, 0.44 mmol, 2.0 eq) at -65 °C under N2 atmosphere and stirred for 30 min, then added 1,2-dibromo-l, 1,2,2- tetrafluoroethane (107 mg, 0.33 mmol, 1.5 eq). The reaction was stirred at the same temperature for 2.5 h, then quenched with water. The mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by prep-TLC (DCM/MeOH = 12: 1) to afford the desired product, tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (118 mg, 86.1%) as a brown solid. Step 4: Synthesis of tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000134_0001
[00338] A solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (118 mg, 0.19 mmol, 1.0 eq), 2-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)- 4,4,5,5-tetramethyl-l,3,2-dioxaborolane (94 mg, 0.28 mmol, 1.5 eq), K2CO3 (130 mg, 0.94 mmol, 5.0 eq) and Pd(PPhs)4 (33 mg, 0.03 mmol, 0.15 eq) in dioxane (2 mL) and H2O (0.5 mL) was stirred at 100 °C for 15 h under nitrogen atmosphere. The mixture was concentrated to give the crude product. The crude product was purified by Prep-TLC (DCM/MeOH = 12: 1) to afford the desired product, tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)- 2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (130 mg, 91.5%) as a white solid. LCMS: m/z 752.3 (M+H+).
Step 5: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-7-yl)-5- fluoronaphthalen-2-ol
Figure imgf000134_0002
[00339] A solution of tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (130 mg, 0.17 mmol, 1.0 eq) in DCM (2 mL) was added HC1 in dioxane (4M, 2 mL) and stirred for 3 h. The precipitate formed was collected by fdtration, washed with DCM (3 mL). The solid was partitioned between EtOAc (10 mL) and aqueous NaHCCL (5 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and concentrated to give compound 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)- 6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methylquinazolin-7-yl)-5-fluoronaphthalen-2-ol (39 mg, 37.1%) as a white solid. 1H NMR (300 MHz, DMSO-d6): 8 10.29 (s, 1H), 7.67 (d, J= 8.1 Hz, 1H), 7.46-7.39 (m, 1H), 7.36 (s, 1H), 7.11 (d, J= 1.8 Hz, 1H), 7.01 (dd, J= 13.5, 7.5 Hz, 1H), 5.27 (d, J= 54.0 Hz, 1H), 4.35-3.85 (m, 4H), 3.59-3.38 (m, 4H), 3.20-2.90 (m, 4H), 2.86-2.76 (m, 1H), 2.75-2.63 (m, 1H), 2.37 (s, 3H), 2.13 (s, 1H), 2.05-1.96 (m, 2H), 1.86-1.74 (m, 3H), 1.52-1.29 (m, 3H). LCMS: m/z 608.3 (M+H+).
Example 3
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazoline-6- carbonitrile
Figure imgf000135_0001
Synthetic scheme:
Figure imgf000136_0001
Step 1: Synthesis of tert-butyl 3-(7-bromo-2-chloro-8-fluoro-6-iodo-5-methylquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000136_0002
[00340] To a solution of 7-bromo-2,4-dichloro-8-fluoro-6-iodo-5-methylquinazoline (1.0 g, 2.30 mmol, 1.0 eq) in DCM (10 mL) was added tert-butyl 3,8-diazabicyclo[3.2.1]octane-8- carboxylate (488 mg, 2.30 mmol, 1.0 eq) and DIEA (890 mg, 6.90 mmol, 3.0 eq) at -60 °C under nitrogen atmosphere. The reaction was stirred at the same temperature for 2 h. The mixture was added DCM (30 mL) and water (10 mL) to separated. The aqueous layer was extracted with DCM (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (petroleum ether: EtOAc = 1 : 1) to give tert-butyl 3-(7-bromo-2-chloro-8- fluoro-6-iodo-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1 g, crude) as a yellow solid. LCMS: m/z 610.9, 612.9 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-iodo-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000137_0001
[00341] To a solution of compound tert-butyl 3-(7-bromo-2-chloro-8-fluoro-6-iodo-5- methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (650 mg, 1.06 mmol, 1.0 eq) in THF/DMF (10 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methanol (505 mg, 3.18 mmol, 3.0 eq), DABCO (119 mg, 1.06 mmol, 1.0 eq) and CS2CO3 (1.03 g, 3.18 mmol, 3.0 eq). The reaction mixture was stirred at room temperature for 3 h. The mixture was partitioned between EtOAc (20 mL) and water (5 mL), the layers were separated. The aqueous layer was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 30: 1—10: 1) to give the desired product, tert-butyl 3-(7-bromo-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-iodo-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane- 8-carboxylate (550 mg, 70.5%) as a white solid. 1H NMR (300 MHz, CDCI3): 5.36 - 5.33 (m, 1H), 4.26 (d, J - 24.6 Hz, 2H), 3.78 - 3.66 (m, 2H), 3.20 - 3.08 (m, 3H), 2.59 (s, 3H), 2.24 - 2.00 (m, 3H), 1.83 - 1.71 (m, 6H), 1.44 - 1.38 (m, 2H), 1.25 (s, 9H), 1.10 (s, 1H), 0.88 - 0.68 (m, 3H). LCMS: m/z 734.1, 736.1 (M+H+). Step 3: Synthesis of tert-butyl 3-(7-bromo-6-cyano-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000138_0001
[00342] To a solution of tert-butyl 3-(7-bromo-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-iodo-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2 1] octane- 8-carboxylate (140 mg, 0.19 mmol, 1.0 eq) in DMF (3 mL) was added Zn(CN)2 (29.1 mg, 0.25 mmol, 1.3 eq), Pd(PPh3)4 (21 mg, 0.019 mmol, 0.1 eq) under nitrogen atmosphere. The reaction mixture was stirred at 100 °C for 12 h. The mixture was partitioned between EtOAc (20 mL) and water (5 mL). The aqueous layer was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 30: 1—10: 1) to give the desired product, tert-butyl 3-(7-bromo-6-cyano-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 41.6%) as a yellow solid. LCMS: m/z 633.1, 635.1 (M+H+).
Step 4: Synthesis of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000138_0002
[00343] To a solution of tert-butyl 3-(7-bromo-6-cyano-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate (40 mg, 0.06 mmol, 1.0 eq) in dioxane (2 mL) and H2O (0.4 mL) was added 2-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-4,4,5,5-tetramethyl-l,3,2- dioxaborolane (31.2 mg, 0.09 mmol, 1.5 eq), CS2CO3 (58.6 mg, 0.18 mmol, 3.0 eq) and Pd(PPh3)4 (7.3 mg, 0.09 mmol, 1.5 eq) under nitrogen atmosphere. The reaction mixture was stirred at 100 °C for 6 h. EtOAc (20 mL) and water (5 mL) were added. The aqueous layer was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 30: 1—10: 1) to give the desired product, tert-butyl 3- (6-cyano-8-fluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (10 mg, 20.8%) as a yellow solid. LCMS: m/z 759.2, 760.2 (M+H+).
Step 5: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)-5-methylquinazoline-6-carbonitrile
Figure imgf000139_0001
[00344] A solution of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (10 mg, 0.01 mmol, 1.0 eq) in DCM (0.5 mL) was added HC1 in dioxane (4M, 0.5 mL) and stirred at room temperature for 4 h under nitrogen atmosphere. The mixture was concentrated to give the crude product. The residue was partitioned between EtOAc (10 mL) and aqueous NaHCO3 (5 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 40%) to give the desired product, 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8- fluoro-3-hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methylquinazoline-6-carbonitrile(3.8 mg, 46.9%) as a white solid. H NMR (300 MHz, CD30D): d 7.54 (d, J= 8.1 Hz, 1H), 7.41 - 7.40 (m, 1H), 7.38 (s, 1H), 7.08 (d, J = 2.4 Hz, 1H), 6.95 - 6.88 (m, 1H), 5.38 (d, J= 54 Hz, 1H), 4.45 - 4.39 (m, 2H), 3.81 - 3.69 (m, 4H), 3.54
- 3.31 (m, 4H), 3.30 - 2.85 (m, 2H), 2.75 (s, 3H), 2.55 - 2.29 (m, 2H), 2.28 - 2.12 (m, 2H), 2.04
- 1.80 (m, 2H), 1.93 - 1.72 (m, 2H), 1.79 - 1.24 (m, 2H). LCMS: m/z 615.3 (M+H+).
Example 4
4-(4-(3,8-diazabicyclo [3.2.1] octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-7-yl)-5-fluoronaphthalen-2-ol
Figure imgf000140_0001
Synthetic scheme
Figure imgf000141_0001
Step 1: Synthesis of tert-butyl 3-(7-bromo-2,6-dichloro-8-fluoro-5-methyl quinazolin-4-yl)-
3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000141_0002
[00345] To a solution of 7-bromo-2,4,6-trichloro-8-fluoro-5-methylquinazoline (400 mg, 1.16 mmol, 1.0 eq) in DCM (10 mL) was added tert-butyl 3,8-diazabicyclo[3.2.1]octane-8- carboxylate (245.9 mg, 1.16 mmol, 1.0 eq) and DIEA (448 mg, 3.48 mmol, 3.0 eq) under nitrogen atmosphere. The reaction was stirred at -60 °C for 2 h, then diluted with DCM (20 mL) and water (10 mL). The organic layer was separated. The aqueous layer was extracted with DCM (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (petroleum ether: EtOAc = 10: 1~3: 1) to give the desired product, tert-butyl 3-(7-bromo-2,6- dichloro-8-fluoro-5-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (380 mg, 62.7%) as a yellow solid. 1H NMR (400 MHz, CDC13): 3 4.35 - 4.15 (m, 2H), 3.69 - 3.60 (m, 2H), 2.52 (s, 3H), 1.84 - 1.72 (m, 2H), 1.63 - 1.51 (m, 4H), 1 .50 (s, 9H). LCMS: m/z 519.0, 521.0 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diaza bicyclo [3.2.1] octane-8-carboxylate
Figure imgf000142_0001
[00346] To a solution of tert-butyl 3-(7-bromo-2,6-dichloro-8-fluoro-5-methylquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (380 mg, 0.73 mmol, 1.0 eq) in THF/DMF (5 mL/5 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (139.2 mg, 0.87 mmol, 1.2 eq), DABCO (245.2 mg, 2.19 mmol, 3.0 eq) and CS2CO3 (713.9 mg, 2.19 mmol, 3.0 eq), the reaction mixture was stirred at room temperature for 3 h. The mixture was concentrated and partitioned between EtOAc (20 mL) and water (10 mL). The layers were separated. The aqueous layer was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 10: 1~1: 1) to give the desired product, tert-butyl 3-(7-bromo-6-chloro-8-fluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (350 mg, 74.5%) as a white solid. LCMS: m/z 642.2, 644.2 (M+H+).
Step 3: Synthesis of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)-5- methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000143_0001
[00347] To a solution of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8-carboxylate (340 mg, 0.53 mmol, 1.0 eq) in dioxane/FLO (5 mL/1 mL) was added 2-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane (211 mg, 0.63 mmol, 1.2 eq), Pd(PPh3)4 (61 mg, 0.053 mmol, 0.1 eq) and K2CO3 (219 mg, 1.59 mmol, 3.0 eq) under nitrogen atmosphere. The reaction was stirred at 100 °C for 6 h. The mixture was concentrated and partitioned between EtOAc (20 mL) and water (5 mL). The aqueous layer was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 50: 1—10: 1) to give the desired product, tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (300 mg, 73.8%) as a yellow solid. LCMS: m/z 768.3 (M+H+).
Step 4: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-7-yl)-5- fluoronaphthalen-2-ol
Figure imgf000143_0002
[00348] A solution of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-
(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5 -methyl quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (300 mg, 0.39 mmol, 1.0 eq) in DCM (1 mL) was added HC1 in dioxane (4M, 1 mL) and stirred at room temperature for 4 h. The mixture was concentrated to give the crude residue, which was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 40%) to provide the desired product, 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methylquinazolin-7-yl)-5-fluoronaphthalen-2-ol (73 mg, 29.9%) as a white solid. 1H NMR (300 MHz, DMSO-d6): 3 8.21 (brs, 1H), 7.64 (m, 1H), 7.40 - 7.33 (m, 1H), 7.32 (s, 1H), 7.00 - 6.93 (m, 2H), 5.35 - 5.17 (d, J= 54.0 Hz, 1H), 4.11 - 3.97 (m, 3H), 3.56 - 3.51 (m, 4H), 3.11 - 3.08 (m, 3H), 2.83 - 2.80 (m, 2H), 2.50 (s, 3H), 2.14 - 2.13 (m, 1H), 2.03- 1.99 (m, 2H), 1.88 - 1.79 (m, 3H), 1.77 - 1.55 (m, 3H). LCMS: m/z 624.2 (M+H+).
Example 5
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-fluoronaphthalen-2-ol
Figure imgf000144_0001
Synthetic scheme
Figure imgf000145_0001
Step 1: Synthesis of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000145_0002
[00349] To a solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (300 mg, 1.1 mmol, 1.0 eq) and DIEA (526 mg, 4.1 mmol, 3.6 eq) in DCM (3 mL) was added tert-butyl 3,8- diazabicyclo[3.2.1]octane-8-carboxylate (312 mg, 1.5 mmol, 1.3 eq) at -40 °C under nitrogen atmosphere. The reaction was stirred at the same temperature for 2 h. The mixture was concentrated to give a residue. The residue was partitioned between DCM (10 mL) and water (5 mL). The layers were separated. The aqueous layer was extracted with DCM (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by prep-TLC (PE/EA 15:1) to give the desired product, tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (397 mg, 81.9 %) as a yellow solid. LCMS: m/z 441.1 (M+H+).
Step 2: Synthesis of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8- carboxylate
Figure imgf000146_0001
[00350] A solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo [3.2.1]octane-8-carboxylate (347 mg, 0.79 mmol, 1.0 eq), ((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (150 mg, 0.94 mmol, 1.2 eq), DABCO (88 mg, 0.79 mmol, 1.0 eq) and CS2CO3 (770mg, 2.37 mmol, 3.0 eq) in THF (3.5 mL) and DMF (3.5 mL) was stirred at room temperature for 15 h under nitrogen atmosphere. The mixture was diluted with H2O (12 mL), extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM / MeOH 15: 1) to give the desired product, tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (353 mg, 79.3 %) as a yellow solid. LCMS: m/z 564.3 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000147_0001
[00351] To a solution of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (168 mg, 0.30 mmol, 1.0 eq) in THF (2 mL) was added LDA (0.3 mL, 0.60 mmol, 2.0 eq) at -65 °C under N2 atmosphere. The mixture was stirred at -65 °C for 30 min. The mixture l,2-dibromo-l,l,2,2-tetrafluoroethane (147 mg, 0.45 mmol, 1.5 eq) was added and stirred for 2 h. The reaction was quenched with water. The mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and evaporated to dryness. The reaction was repeated two times. The crude product was purified by prep-TLC (DCM/ MeOH 12: 1) to give the desired product, tert-butyl 3-(7-bromo-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (237 mg, 61.5 %) as a brown solid.
Step 4: Synthesis of tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000147_0002
[00352] A solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (100 mg, 0.16 mmol, 1.0 eq), 2-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)- 4,4,5,5-tetramethyl-l ,3,2-dioxaborolane (78 mg, 0.23 mmol, 1.5 eq), K2CO3 (107 mg, 0.78 mmol, 5.0 eq) and Pd(PPh3)4 (27 mg, 0.02 mmol, 0.15 eq) in dioxane (2 mL) and H2O (0.5 mL) was stirred at 100 °C for 15 h under nitrogen atmosphere. The mixture was concentrated to give the crude product. The crude product was purified by Prep-TLC (DCM/MeOH = 12/1) to give the desired product, tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)- 2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (120 mg, 99 %) as a white solid. LCMS: m/z 768.3 (M+H+).
Step 5: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5- fluoronaphthalen-2-ol
Figure imgf000148_0001
[00353] A solution of tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin- 4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (120 mg, 0.16 mmol, 1.0 eq) in DCM (2 mL) was added HC1 in dioxane (4M, 2 mL) and stirred at room temperature for 3 h. The precipitate formed was collected by filtration and washed with DCM. The solid was partitioned between EtOAc (10 mL) and aqueous NaHCCh (5 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and evaporated to give the desired product, 4-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-fluoronaphthalen-2-ol (34 mg, 33.1%) as a white solid. 1H NMR (300 MHz, DM SO- ) 5 10.32 (bs, 1H), 7.68 (d, J= 8.1 Hz, 1H), 7.50-7.42 (m, 1H), 7.37 (m, 1H), 7.15 (d, J= 1.8 Hz, 1H), 7.08-6.90 (m, 1H), 5.27 (d, J= 54.0 Hz, 1H), 4.10-3.89 (m, 4H), 3.76 (s, 3H), 3.50-3.35 (m, 4H), 3.13-3.04 (m, 2H), 3.02-2.97 (m, 1H), 2.85- 2.77 (m, 1H), 2.16-2.10 (m, 1H), 2.05-1.95 (m, 2H), 1.90-1.75 (m, 3H), 1.65-1.55 (m, 4H), 1.23 (brs, 1H). LCMS: m/z 624.3 (M+H+).
Example 6 (included in Example 11 and 12)
4-(4-((3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-fluoronaphthalen-2-ol
Example 7
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline-6-carbonitrile
Figure imgf000149_0001
Synthetic scheme:
Figure imgf000150_0001
Step 1: Synthesis of tert-butyl 3-(7-bromo-5,8-difluoro-6-iodo-2-(methylthio)quinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000150_0002
[00354] To a solution of 7-bromo-4-chloro-5,8-difluoro-6-iodo-2-(methylthio)quinazoline (1.4 g, 3.11 mmol, 1.2 eq) and DIEA (1.0 g, 7.77mmol, 3.0 eq) in DCM (15 mL) stirring at -65 °C under nitrogen atmosphere was added dropwise tert-butyl (lR,5S)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (550 mg, 2.59 mmol, 1.0 eq) in DCM (5 mL). The mixture was stirring at -65 °C for 2h under nitrogen atmosphere. The residue was quenched with IN HC1 (15 mL) and extracted with DCM (30 mL x 3). The organic phase was washed with brine (30 mL), dried with NajSCL, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 30: 1) to give tert-butyl 3-(7-bromo-5,8-difluoro-6-iodo-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (1.0 g, 61.5%) as a yellow solid. 1H NMR (300 MHz, CDCl3): 34.30 (s, 2H), 4.08 (d, J= 13.8 Hz, 2H), 3.51 (s, 2H), 2.60 (s, 3H), 1.95 - 1.80 (m, 2H), 1.70 - 1.62 (m, 2H), 1.50 (s, 9H). LCMS: m/z 627.0 (M +H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-6-cyano-5,8-difluoro-2-(methylthio)quinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000151_0001
[00355] To a solution of tert-butyl 3-(7-bromo-5,8-difluoro-6-iodo-2-(methylthio)quinazolin- 4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.0 g, 1.59 mmol, 1.0 eq) in DMF (10 mL) was added CuCN (214 mg, 2.39 mmol, 1.5 eq). Then the reaction mixture was stirred at 95°C for 48 h under nitrogen atmosphere. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The organic phase was washed with water (20 mL x 2) and brine (20 mL), dried with Na2SO4, fdtered and concentrated to give residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 20: 1) to give tert-butyl 3-(7-bromo-6- cyano-5,8-difluoro-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 59.6%) as a yellow solid. 1H NMR (300 MHz, CDCl3): 3 4.32 (s, 2H), 4.22 - 3.98 (m, 2H), 3.56 (d, J= 12.6 Hz, 2H), 2.61 (s, 3H), 1.95 - 1.82 (m, 2H), 1.64 - 1.59 (m, 2H), 1.51 (s, 9H). LCMS: m/z 526.1 (M+H+).
Step 3: Synthesis of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000152_0001
[00356] To a solution of tert-butyl 3-(7-bromo-6-cyano-5,8-difluoro-2- (methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 0.95 mmol, 1.0 eq) in Dioxane (8 mL) and H2O (2 mL) was added 2-(8-fluoro-3- (methoxymethoxy)naphthalen-l -yl)-4,4,5,5-tetramethyl-l ,3,2-dioxaborolane (474 mg, 1.42 mmol, 1.5 eq), K2CO3 (657 mg, 4.76 mmol, 5.0 eq) and Pd (PPh3)4 (165 mg, 0.14 mmol, 0.15 eq). The reaction mixture was stirred at 100 °C for 2 h under nitrogen atmosphere. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The organic phase was washed with brine (20 mL), dried with JSfeSCL, filtered and concentrated to give residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 5: 1) to give tert-butyl 3 -(6-cyano-5,8-difluoro-7-(8-fluoro-3 -(methoxymethoxy) naphthal en-l-yl)-2- (methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (350 mg, 56.4%) as a yellow solid. 1H NMR (300 MHz, CDCl3): 4’ 7.64 (d, J= 7.8 Hz, 1H), 7.58 (t, J= 2.4 Hz, 1H), 7.46 - 7.38 (m, 1H), 7.22 (d, J= 2.4 Hz, 1H), 7.04 - 6.95 (m, 1H), 5.33 (s, 2H), 4.36 (s, 2H), 4.23 - 4.05 (m, 2H), 3.65- 3.56 (m, 2H), 3.54 (s, 3H), 2.62 (s, 3H), 1.98- 1.88 (m, 2H), 1.76- 1.68 (m, 2H), 1.52 (s, 9H). LCMS: m/z 652.2 (M+H+).
Step 4: Synthesis of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(methylsulfonyl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000152_0002
[00357] To a solution of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3- (m ethoxymethoxy )naphthalen-l-yl)-2-(methylthio)quinazolin-4-yl)-3, 8- diazabicyclo[3.2.1]octane-8-carboxylate (350 mg, 0.53 mmol, 1.0 eq) in DCM (6.00mL) was added m-CPBA (309 mg, 1.34 mmol, 2.5 eq, 75%) at 0°C under nitrogen atmosphere. Then the reaction mixture was stirred at room temperature for 3 h. The mixture was diluted with Na2SOs solution (15 mb) and extracted with EtOAc (20 mL x 3). The combined organic phase was washed with brine (15 mL), dried over NazSO4 and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 2: 1) to give tertbutyl 3 -(6-cyano-5,8-difluoro-7-(8-fluoro-3 -(methoxymethoxy) naphthalen-l-yl)-2- (methylsulfonyl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1] octane-8-carboxylate (270 mg, 73.5%) as a yellow solid. 1H NMR (400 MHz, CDCl3): 3 7.66 (d, J= 8.4 Hz, 1H), 7.62 (t, J= 2.4 Hz, 1H), 7.47 - 7.41 (m, 1H), 7.22 (d, J= 2.4 Hz, 1H), 7.04 - 6.95 (m, 1H), 5.34 (d, J= 1.2 Hz, 2H), 4.51- 4.23 (m, 4H), 3.73 (s, 2H), 3.55 (s, 3H), 3.40 (s, 3H), 1.99 - 1.91 (m, 2H), 1.69 - 1.60 (m, 2H), 1.53 (s, 9H). LCMS: m/z 684.2 (M+H+).
Step 5: Synthesis of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000153_0001
[00358] To a solution of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (170 mg, 0.24 mmol, 1.0 eq) and ((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (119 mg, 0.74 mmol, 3.0 eq) in THF (5.00 mL) was added LiHMDS (IM in THF) (0.74 mL, 0.74 mmol, 3.0 eq) dropwise at 0 °C under nitrogen atmosphere. Then the reaction mixture was stirred at 0 °C for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (15 mL), dried over Na2SO4 and concentrated to give the crude product. The crude product was purified by prep-TLC (DCM: MeOH = 20: 1) to give tert-butyl 3-(6- cyano-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (130 mg, 68.7%) as a yellow solid. 1H NMR (400 MHz, CDCl3): d 7.63 (d, = 8.0 Hz, 1H), 7.57 (t, J = 1.6 Hz, 1H), 7.48 - 7.37 (m, 1H), 7.21 (d, J= 2.4 Hz, 1H), 6.98 (dd, J= 12.8, 7.6 Hz, 1H), 5.32 (s, 2H), 5.31 - 5.19 (m, 1H), 4.44 - 4.23 (m, 4H), 4.23 - 4.14 (m, 2H), 3.58 (d, J= 13.2 Hz, 2H), 3.54 (s, 3H), 3.35 - 3.15 (m, 3H), 3.03 - 2.95 (m, 1H), 2.34 - 2.08 (m, 4H), 2.00 - 1.80 (m, 6H), 1.52 (s, 9H). LCMS: m/z 763.3 (M+H+).
Step 6: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)quinazoline-6-carbonitrile
Figure imgf000154_0001
[00359] To a solution of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (30 mg, 0.039 mmol, 1.0 eq) in DCM (2.0 mL) was added HCl/dioxane (4N) (0.5 mL) dropwise at 0 °C. Then the reaction mixture was stirred at room temperature for 3 h. The mixture was basified with saturated aqueous NaHCCh (3 mL) and extracted with EtOAc (10 mL * 5). The combined organic phase was washed with brine (8 mL), dried over ISfeSCL and concentrated to give the crude product. The crude product was purified by prep-TLC (DCM: MeOH = 6: 1) to give 4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline-6-carbonitrile (14.2 mg, 58.4%) as a white solid. 1H NMR (300 MHz, CD3OD): 3 7.62 (d, J= 8.1 Hz, 1H), 7.49 - 7.35 (m, 1H), 7.36 (t, J= 2.4 Hz, 1H), 7.12 (d, J = 2.4 Hz, 1H), 7.00 - 6.91 (m, 1H), 5.34 (d, J= 53.7 Hz, 1H), 4.46 - 4.28 (m, 3H), 4.27 - 34.15 (m, 1H), 3.81 - 3.73 (m, 2H), 3.71 - 3.58 (m, 2H), 3.47 - 3.34 (m, 2H), 3.29 - 3.26 (m, 1H), 3.17 - 3.04 (m, 1H), 2.47 - 2.32 (m, 1H), 2.30 - 2.23 (m, 1H), 2.21 - 2.13 (m, 1H), 2.11 - 1.93 (m, 3H), 1.94 - 1.82 (m, 4H). 19F NMR (300 MHz, CD3OD): 3 -101.895, -117.116, -131.465, -173.756. LCMS: m/z 619.2 (M+H+).
Example 8
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline-6- carbonitrile formate
Figure imgf000155_0001
Synthesis scheme
Figure imgf000156_0001
Step 1: Synthesis of 7-bromo-8-fluoro-6-iodo-5-methoxy-2-(methylthio)quinazolin-4-ol
Figure imgf000156_0002
[00360] To a solution of MeOH (666.2 mg, 20.82 mmol, 3.0 eq) in DMF (30.0 mL) was added NaH (593.6 mg, 24.31 mmol, 3.5 eq) at 0 °C under nitrogen atmosphere. The reaction mixture was stirred at 0 °C for 1 h. Then 7-bromo-5,8-difluoro-6-iodo-2-(methylthio)quinazolin- 4-ol (3.0 g, 6.94 mmol, 1.0 eq) was added. The reaction mixture was stirred at room temperature for 15 h. The reaction mixture was quenched by the addition of saturated aqueous NH4CI solution (10 mL) and extracted with EtOAc (30 mb x 3). The organic phase was washed with brine (20 mL), dried with Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (Petroleum ether: EtOAc = 3: 1) to give 7-bromo- 8-fluoro-6-iodo-5-methoxy-2-(methylthio)quinazolin-4-ol (2.2 g, 71.4%) as a yellow solid. JH NMR (400 MHz, DMSO-^): 3 12.81 (brs, 1H), 3.74 (s, 3H), 2.56 (s, 3H). LCMS: m/z 444.8, 446.8 (M+H+).
Step 2: Synthesis of tert-butyl-3-(7-bromo-8-fluoro-6-iodo-5-methoxy-2-(methylthio) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000157_0001
[00361] To a solution of 7-bromo-8-fluoro-6-iodo-5-methoxy-2-(methylthio)quinazolin-4-ol (2.20 g, 4.95 mmol, 1.0 eq) in DMF (25.0 mL) was added tert-butyl 3,8- diazabicyclo[3.2.1]octane-8-carboxylate (2.10 g, 9.91 mmol, 2.0 eq), DBU (2.26 g, 14.87 mmol, 3.0 eq) and BOP (3.29g, 7.43mmol, 1 .5 eq). The reaction mixture was stirred at 90 °C for 5 h under nitrogen atmosphere. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The combined organic layers were washed with H2O (20 mL x 2), brine (20 mL x 3), dried over Na2SO4, filtered and concentrated to give the crude product. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 5: 1) to give tert-butyl 3-(7-bromo-8-fluoro-6-iodo-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (1.5 g, 47.4%) as a yellow solid. 1H NMR (400 MHz, CDCl3): 34.39 - 4.25 (m, 3H), 3.58 (s, 3H), 3.48 - 3.46 (m, 2H), 2.61 (s, 3H), 1.86 - 1.78 (m, 2H), 1.58 (s, 3H), 1.5 (s, 9H). LCMS: m/z 638.9, 641.0 (M+H+).
Step 3: Synthesis of tert-butyl-3-(7-bromo-6-cyano-8-fluoro-5-methoxy-2-(methylthio) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000158_0002
[00362] To a solution of tert-butyl 3-(7-bromo-8-fluoro-6-iodo-5-methoxy-2- (methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.0 g, 1.56 mmol, 1.0 eq) in DMF (10 mL) was added CuCN (211 mg, 2.35 mmol, 1.5 eq). The reaction mixture was stirred at 90°C for 36 h under nitrogen atmosphere. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The organic phase was washed with water (20 mL x 2) and brine (20 mL), dried with Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 20: 1) to give tert- butyl 3-(7-bromo-6-cyano-8-fluoro-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (720 mg, 85.5%) as a yellow solid. LCMS: m/z 538.1, 540.1 (M + H+).
Step 4: Synthesis of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000158_0001
[00363] To a solution of tert-butyl 3-(7-bromo-6-cyano-8-fluoro-5-methoxy-2- (methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (720 mg, 1.33 mmol, 1.0 eq) in Dioxane (10 mL) and H2O (2.5 mL) was added 2-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane (666 mg, 2.0 mmol, 1.5 eq), K2CO3 (554 mg, 4.0 mmol, 3.0 eq) and Pd (PPh3)4 (232 mg, 0.20 mmol, 0.15 eq). The reaction mixture was stirred at 100 °C for 2 h under nitrogen atmosphere. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The organic phase was washed with brine (20 mL), dried with Na2SO4, filtered and concentrated to give residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 1; 1) to give tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- 1 -yl)-5- methoxy-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1] octane- 8 -carboxylate (290 mg, 32.6%) as a yellow solid. 1H NMR (300 MHz, CDC13): δ 7.62 (d, J= 7.8 Hz, 1H), 7.56 (t, J= 2.4 Hz, 1H), 7.45 - 7.35 (m, 1H), 7.23 (d, J= 2.4 Hz, 1H), 7.01 - 6.92 (m, 1H), 5.33 (s, 2H), 4.51 - 4.17 (m, 3H), 3.88 (s, 3H), 3.64 - 3.53 (m, 2H), 3.54 (s, 3H), 2.62 (s, 3H), 2.03 - 1.74 (m, 3H), 1.73- 1.59 (m, 2H), 1.52 (s, 9H). LCMS: m/z 664.2 (M+H+),
Step 5: Synthesis of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-5-methoxy-2-(methylsulfonyl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1] octane-8-carboxylate
Figure imgf000159_0001
[00364] To a solution of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3-
(methoxymethoxy)naphthalen-l-yl)-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (290 mg, 0.43 mmol, 1.0 eq) in DCM (5.00mL) was added m-CPBA (251 mg, 1.09 mmol, 2.5 eq, 75%) at 0 °C under nitrogen atmosphere. Then the reaction mixture was stirred at room temperature for 3 h. The mixture was diluted with Na2SCh solution (15 mL) and extracted with EtOAc (15 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc - 2: 1) to give tertbutyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-5-methoxy-2- (methylsulfonyl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (150 mg, 49.3%) as a yellow solid. *H NMR (400 MHz, CDCI3): δ 7.65 (d, J= 8.0 Hz, 1H), 7.60 (t, J= 2.4 Hz, 1H), 7.48 - 7.38 (m, 1H), 7.23 (d, J= 1A Hz, 1H), 7.03 - 6.92 (m, 1H), 5.34 (s, 2H), 4.48 - 4.28 (m, 2H), 3.94 (s, 3H), 3.55 (s, 3H), 3.53 - 3.44 (m, 1H),3.41 (s, 3H), 3.39 - 3.28 (m, 1H), 2.00 (s, 1H), 1.93- 1.86 (m, 2H), 1.53 (s, 3H), 1.52 (s, 9H). LCMS: m/z 696.2 (M+H+).
Step 6: Synthesis of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate
Figure imgf000160_0001
[00365] To a solution of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-5-methoxy-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (120 mg, 0.17 mmol, 1.0 eq) and ((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (82 mg, 0.51 mmol, 3.0 eq) in THF (5.00 mL) was added LiHMDS (IM in THF) (0.51 mL, 0.51 mmol, 3.0 eq) dropwise at 0 °C under nitrogen atmosphere. Then the reaction mixture was stirred at 0 °C for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (15 mL), dried over Na2SO4 and concentrated to give the crude product. The crude product was purified by prep-TLC (DCM: MeOH - 20: 1) to give tert-butyl 3-(6- cyano-8-fluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro- 1 H-pyrrolizin-7 a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3 ,8- diazabicyclo[3.2.1]octane-8-carboxylate (110 mg, 82.7%) as a yellow solid. 1H NMR (400 MHz, CDCl3): δ 7.62 (d, J= 8.4 Hz, 1H), 7.55 (t, J= 2.4 Hz, 1H), 7.45 - 7.34 (m, 1H), 7.23 (d, J= 2.4 Hz, 1H), 6.96 (dd, J= 12.8, 7.2 Hz, 1H), 5.47 - 5.23 (s, 3H), 4.45 - 4.26 (m, 4H), 3.88 (s, 3H), 3.54 (s, 3H), 3.53 - 3.45 (m, 2H), 3.38 - 3.23 (m, 2H), 3.21 -2.89 (m, 2H), 2.42 - 2.21 (m, 3H), 2.10 - 1.97 (m, 3H), 1.92 - 1.82 (m, 3H), 1.71 - 1.63 (m, 3H), 1.51 (s, 9H). LCMS: m/z 775.3 (M+H+).
Step 7: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazoline-6-carbonitrile formate (1: 1)
Figure imgf000161_0001
[00366] To a solution of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen- 1 -yl)-2-(((2R,7aS)-2-fluorotetrahydro- 1 H-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (25 mg, 0.03 mmol, 1.0 eq) in ACN (2.0 mL) was added TFA (0.5 mL) dropwise at 0 °C. Then the reaction mixture was stirred at room temperature for 3 h. The mixture was basified with saturated aqueous NaHCO3 (5 mL) and extracted with EtOAc (10 mL x 5). The combined organic phase was washed with brine (8 mL), dried over Na2SO4 and concentrated to give the crude product. The crude product was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 40%) to give 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline-6- carbonitrile formate (1: 1) (2.6 mg, 12.8%) as a white solid. NMR (300 MHz, CD3OD): δ 8.51 (brs, 1H), 7.61 (d, J= 8.1 Hz, 1H), 7.45 - 7.37 (m, 1H), 7.34 (t, J= 2.4 Hz, 1H), 7.09 (d, 7 = 2.4 Hz, 1H), 6.98 - 6.89 (m, 1H), 5.33 (d, J= 53.7 Hz, 1H), 4.49 - 4.28 (m, 3H), 4.27 - 4.05 (m, 1H), 3.91 (s, 3H), 3.82 - 3.59 (m, 4H), 3.57 - 3.33 (m, 3H), 3.17 - 3.04 (m, 1H), 2.47 2.32
(m, 1H), 2.31 - 2.24 (m, 1H), 2.21 - 2.14 (m, 1H), 2.13 - 1.95 (m, 3H), 1.94 - 1.77 (m, 4H). 19p NMR (300 MHz, CD3OD): δ -117.136, -132.669, -173.759. LCMS: m/z 631.2 (M + H+).
Example 9 and 10
(R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2- (((2R,7 aS)-2-fluorotetr ahydro- 1 H-pyrrolizin-7 a(5H)-yl)methoxy)-5-methoxyquinazoline-6- carboxamide formate (1: 1)
Figure imgf000162_0001
(S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline-6- carboxamide formate (1: 1)
Figure imgf000162_0002
Synthesis scheme
Figure imgf000162_0003
the two isomers (R or S) cannot be confirmed Step 1: Synthesis of tert-butyl 3-(6-carbamoyl-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fhiorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3 ,8-diazabicyclo [3.2.1] octane-8-carboxylate
Figure imgf000163_0001
[00367] To a solution of tert-butyl 3-(6-cyano-8-fluoro-7-(8-fluoro-3-
(methoxymethoxy)naphthalen- 1 -yl)-2-(((2R,7aS)-2-fluorotetrahydro- 1 H-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (80 mg, 0.10 mmol, 1.0 eq) in DMSO (2 mL) was added K2CO3 (21 mg, 0.15 mmol, 1.5 eq) and 30% H2O2 (2 d). The mixture was stirred at room temperature for 2 h. The mixture was diluted with water (8 mL) and extracted with EtOAc (8 mL x 3). The combined organic phase was washed with water (8 mL x 3) and brine (8 mL), dried over Na2SO4 and concentrated to give the crude product. The crude product was purified by prep-TLC (DCM: MeOH = 15: 1) to give tert-butyl 3-(6-carbamoyl-8-fhioro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro- 1 H-pyrrolizin-7 a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 61.0%) as a yellow solid.1H NMR (300 MHz, CDCI3): 87.60 (d, J= 7.2 Hz, 1H), 7.50 - 7.47 (m, 1H), 7.39 - 7.33 (m, 1H), 7.20 (d, J= 2.1 Hz, 1H), 6.98 - 6.89 (m, 1H), 5.64 - 5.21 (m, 5H), 5.28 - 5.16 (m, 1H), 4.40 - 4.23 (m, 4H), 4.09 - 3.94 (m, 1H), 3.74 (s, 3H), 3.53 (s, 3H), 3.42 - 3.17 (m, 3H), 3.08 - 2.99 (m, 1H), 2.37 - 2.18 (m, 4H), 2.02 - 1.86 (m, 6H), 1.51 (s, 9H). LCMS: m/z 793.3 (M+H+).
Step 2: Synthesis of (R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazoline-6-carboxamide formate (1: 1) and (S)-4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-8-fhioro-7-(8-fhioro-3-hydroxynaphthalen-l-yl)-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline-6- carboxamide formate (1: 1)
Figure imgf000164_0001
R or S was randomly assigned
[00368] To a solution of tert-butyl 3-(6-carbamoyl-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (50 mg) in ACN (3 mL) was added TFA (1 mb). The mixture was stirred at room temperature for 2 h. The mixture was basified with saturated aqueous NaHCOs (10 mL) and extracted with EtOAc (15 mL x 5). The combined organic layers were dried over NazSO4 and concentrated to give crude product. The crude product was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 40%) to give compound (R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro- 3-hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)- 5-methoxyquinazoline-6-carboxamide formate (1 : 1) (2.7 mg, 6.9% ) and (S)-4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline-6-carboxamide formate (1 : 1) (3.3 mg, 8.5%) as a white solid, the two isomers (R or 5) cannot be confirmed. (R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline-6- carboxamide formate (1 : 1) as Peak 1 : 1H NMR (300 MHz, CD3OD): 7.53 (d, J= 8.1 Hz, 1H), 7.34 (td, J= 8.1, 5.1 Hz, 1H), 7.24 (t, J= 2.4 Hz, 1H), 7.07 (d, J= 2.4 Hz, 1H), 6.92 - 6.82 (m, 1H), 5.41 (d, J= 53.7 Hz„ 1H), 4.49 - 4 35 (m, 3H), 3.88 (s, 2H), 3 77 (s, 3H), 3.75 - 3 55 (m, 3H), 3.54 - 3.39 (m, 3H), 3.24 - 3.16 (m, 1H), 2.52 - 2.39 (m, 1H), 2.38 - 2.32 (m, 1H), 2.29 - 2.21 (m, 1H), 2.20 - 2.03 (m, 3H), 2.02 - 1.92 (m, 4H). 19F NMR (300 MHz, CD3OD): 3- 116.065, -133.757, -173.881.
[00369] (S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-8-fluoro-7-(8-fluoro-3-hydroxynaphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline-6-carboxamide formate (1 : 1) as Peak 2: 1H NMR (300 MHz, CD3OD): 3 7.53 (d, J= 8.1 Hz, 1H), 7.34 (td, J= 8.1, 5.1 Hz, 1H), 7.24 (t, J= 2.4 Hz, 1H), 7.07 (d, J= 2.4 Hz, 1H), 6.92 - 6.82 (m, 1H), 5.36 (d, J= 53.7 Hz„ 1H) 4.40 - 4.25 (m, 3H), 3.76 (s, 3H), 3.71 (s, 2H), 3.66 - 3.53 (m, 2H), 3.52 - 3.41 (m, 1H), 3.40 - 3.33 (m, 3H), 3.14 - 3.06 (m, 1H), 2.49 - 2.39 (m, 1H), 2.31 - 2.24 (m, 1H), 2.23 - 2.15 (m, 1H), 2.21 - 1.98 (m, 3H), 1.95 - 1.81 (m, 4H). 19F NMR (300 MHz, CD3OD): 3 -115.945, -133.865, -173.716. LCMS: 649.3/649.2 (M+H+).
Example 11 and 12
4-((S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-5,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5-fluoronaphthalen-2-
Figure imgf000165_0001
4-((R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-5,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5-fluoronaphthalen-2- ol
Figure imgf000166_0001
Step 1: Synthesis of tert-butyl 3-(7-bromo-6-chloro-5,8-difluoro-2-(methylthio)quinazolin-
4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Boc Boc
Figure imgf000166_0002
[00370] To a solution of 7-bromo-6-chloro-5,8-difluoro-2-(methylthio)quinazolin-4-ol (1.7 g, crude, 4.98 mmol, 1.0 eq) in DMF (34 mL) was added tert-butyl (lR,5S)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (2.1 g, crude, 9.95 mmol, 2.0 eq), DBU (1.5 g, 9.95 mmol, 2.0 eq) and BOP (3.3 g, 7.47 mmol, 1.5 eq). The mixture was stirred at 100 °C for 1 h under nitrogen atmosphere. The reaction mixture was diluted with H2O (70 mL) and extracted with DCM (70 mL x 2). The organic layers were washed with water (70 mL x 3) and brine (70 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give residue. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc = 30 / 1) to give tert-butyl (lR,5S)-3-(7-bromo-6-chloro-5,8-difluoro-2-(methylthio)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (530 mg, 19.8 %) as a white solid. 1H NMR (400 MHz, CDCl3): δ 4.30 (s, 2H), 4.12 - 4.00 (m, 2H), 3.60 - 3.38 (m, 2H), 1.93 - 1.81 (m, 2H), 1.73 - 1.64 (m, 2H), 1.55 (s, 3H), 1.50 (s, 9H). LCMS: m/z 535.0, 537.0 (M+H+).
Step 2: Synthesis of tert-butyl 3-(6-chloro-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8-carboxylate and tert-butyl (lR,5S)-3-(7-bromo-5,8-difluoro-6-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(methylthio)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (mixture)
Figure imgf000167_0001
[00371] To a solution of tert-butyl (lR,5S)-3-(7-bromo-6-chloro-5,8-difluoro-2- (methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 0.93 mmol, 1.0 eq) in Dioxane (20 mL) and H2O (5 mL) was added 2-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane (620 mg, 1.87 mmol, 2.0 eq), K2CO3 (387 mg, 2.80 mmol, 3.0 eq) and Pd(PPh3)4 (107 mg, 0.09 mmol, 0.1 eq). The mixture was stirred at 80 °C for 7 h under nitrogen atmosphere. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc = 20 / 1) to give tert-butyl (lR,5S)-3-(6- chl oro-5, 8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthal en- l-yl)-2-(methylthi o)quinazolin- 4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate and tert-butyl (lR,5S)-3-(7-bromo-5,8- difluoro-6-(8-fluoro-3 -(methoxymethoxy )naphthalen-l -yl)-2-(methylthio)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (380 mg, mixture) as a white solid. LCMS: m/z 661.2 (M+H+); 705.1(M+H+).
Step 3: Synthesis of tert-butyl 3-(6-chloro-5,8-difluoro-7-(8-fluoro-3-(methoxy methoxy)naphthalen-l-yl)-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate and tert-butyl 3-(7-bromo-5,8-difluoro-6-(8-fluoro- 3-(methoxymethoxy)naphthalen-l-yl)-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (mixture)
Figure imgf000168_0001
[00372] To a solution of tert-butyl 3-(6-chloro-5,8-difluoro-7-(8-fluoro-3- (m ethoxymethoxy )naphthalen-l-yl)-2-(methylthio)quinazolin-4-yl)-3, 8- diazabicyclo[3.2.1]octane-8-carboxylate and tert-butyl 3-(7-bromo-5,8-difluoro-6-(8-fluoro-3- (m ethoxymethoxy )naphthalen-l-yl)-2-(methylthio)quinazolin-4-yl)-3, 8- diazabicyclo[3.2.1]octane-8-carboxylate (300 mg, mixture, -0.45 mmol, -1.0 eq) in DCM (10 mL) was added m-CPBA (188 mg, 1.09 mmol, 2.4 eq). The mixture was stirred at room temperature for 1 h. The reaction mixture was quenched with saturated aqueous NaiSCT (10 mL) and extracted with DCM (10 mL x 2). The organic layers were washed with saturated aqueous NaHCOs (10 mL) and brine (10 mL), dried over NaiSCh, filtered and concentrated under reduced pressure to give residue. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc = 3 / 1) to give tert-butyl 3-(6-chloro-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate and tert-butyl 3-(7-bromo-5,8-difluoro-6-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (250 mg, mixture) as a white solid. LCMS: m/z 693.2 (M+H+); 737.1 (M+H+).
Step 4: Synthesis of tert-butyl 3-((S)-6-chloro-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lTT-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate and tert-butyl (lR,5S)-3-((R)-6-chloro-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lFT-pyrrolizin-7a(5Fr)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000169_0001
R or S was randomly assigned
[00373] To a solution of tert-butyl 3-(6-chloro-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate and tert-butyl 3-(7-bromo-5,8-difluoro-6-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(m ethyl sulfonyl) quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (250 mg, mixture, -0.36 mmol, -1.0 eq) in THF (10 mL) was added B41163-10 (172 mg, 1.08 mmol, 3.0 eq) and LiHMDS (1 M in THF, 1.08 mL, 1.08 mmol, 3.0 eq) dropwise at 0 °C under nitrogen atmosphere. The mixture was stirred at room temperature for 1 h. The reaction mixture was quenched with HjO (10 mL) and extracted with EtOAc (10 mL x 3). The organic layers were washed with brine (10 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give residue. The residue was purified by SFC to give tert-butyl (lR,5S)-3-((S)-6-chloro-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (44 mg), and tert-butyl (lR,5S)-3-((R)-6-chloro-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2 1 ]octane-8-carboxylate (55 mg), as a white solid, the two isomers (R or S) was randomly assigned.
[00374] tert-butyl 3-((S)-6-chl oro-5, 8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l- yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate: 1H NMR (300 MHz, DMSO-d6): δ 7.81 (d, J= 7.8 Hz, 1H), 7.72 (t, J = 2.1 Hz, 1H), 7.57 - 7.45 (m, 1H), 7.29 (d, J= 2.4 Hz, 1H), 7.20 - 7.10 (m, 1H), 5.39 (s, 2H), 5.27 (d, J= 54.3 Hz, 1H), 4.31 - 3.96 (m, 6H), 3.45 (s, 3H), 3.43 - 3.33 (m, 2H), 3.12 - 3.04 (m, 2H), 2.99 (s, 1H), 2.87 - 2.76 (m, 1H), 2.15 - 1.73 (m, 10H), 1.45 (s, 9H).
LCMS: m/z 772.3 (M+H+).
[00375] tert-butyl 3-((R)-6-chloro-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l- yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate: 1H NMR (300 MHz, DMSO-d6): δ 7.81 (d, J= 7.8 Hz, 1H), 7.72 (t, J = 2.1 Hz, 1H), 7.57 - 7.45 (m, 1H), 7.29 (d, J= 2.4 Hz, 1H), 7.20 - 7.10 (m, 1H), 5.39 (s, 2H), 5.27 (d, J= 54.3 Hz, 1H), 4.35 - 3.97 (m, 6H), 3.45 (s, 3H), 3.43 - 3.33 (m, 2H), 3.12 - 3.04 (m, 2H), 2.99 (s, 1H), 2.87 - 2.76 (m, 1H), 2.18 - 1.65 (m, 10H), 1.45 (s, 9H).
LCMS: m/z 772.3 (M+H+).
Step 5 : 4-((S)-4-(3,8-diazabicyclo [3.2.1] octan-3-yl)-6-chloro-5,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5-fluoronaphthalen-2- ol and 4-((R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-5,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-HT-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5-fluoronaphthalen-2- ol
Figure imgf000171_0001
(R or S) were random assigned
[00376] To a solution of tert-butyl 3-((S)-6-chloro-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy) naphthal en-l-yl)-2-(((2R, 7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (44 mg) in DCM (2 mL) was added HCl/Dioxane (4M, 1 mL). The mixture was stirred at room temperature for 3 h. The reaction mixture was concentrated under reduced pressure and diluted with MeOH (2 mL). The pH was adjusted to around 9 by adding aq NaHCOi (2 mL). Then the mixture was concentrated under reduced pressure and diluted with DCM / MeOH = 15/1, fdtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (ACN/ H2O) to give 4-((S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-5,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5- fluoronaphthalen-2-ol (16.1 mg, 45.0%) as a white solid. 1H NMR (400 MHz, CD3OD): d 7.59 (d, J= 8.0 Hz, 1H), 7.38 (td, J= 8.0, 5.2 Hz, 1H), 7.32 (t, J= 2.4 Hz, 1H), 7.00 (d, J= 2.4 Hz, 1H), 6.94 - 6.86 (m, 1H), 5.37 (d, J= 53.4 Hz, 1H), 4.45 - 4.32 (m, 3H), 4.29 (d, J = 5.6 Hz, 1H), 4.25 - 4.20 (m, 1H), 3.92 - 3.85 (m, 2H), 3.71 - 3.57 (m, 2H), 3.51 - 3.36 (m, 3H), 2.45 - 1.92 (m, 10H). 19F NMR (400 MHz, CD3OD): 6 -111.218, -118.194, -130.437, -173.840. LCMS: 628.20 (M+H+). [00377] To a solution of tert-butyl 3-((R)-6-chloro-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (55 mg) in DCM (2 mL) was added HCl/Dioxane (4M, 1 mL). The mixture was stirred at room temperature for 3 h. The reaction mixture was concentrated under reduced pressure and diluted with MeOH (2 mL). The pH was adjusted to around 9 by adding aq NaHCCL (2 mL). Then the mixture was concentrated under reduced pressure and diluted with DCM / MeOH = 15/1, filtered and concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (ACN/ H2O) to give 4-((R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-5,8-difluoro-2- (((2R,7aS)-2-fluoro tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5- fluoronaphthalen-2-ol (12.2 mg, 27.7%) as a white solid. 1H NMR (400 MHz, CD3OD): 5 7.60 (d, J= 8.4 Hz, 1H), 7.39 (td, J= 8.0, 5.2 Hz, 1H), 7.34 (t, J = 2.4 Hz, 1H), 7.00 (d, J= 2.4 Hz, 1H), 6.95 - 6.87 (m, 1H), 5.38 (d, J= 53.4 Hz, 1H), 4.65 - 4.55 (m, 2H), 4.53 - 4.45 (m, 1H), 4.34 - 4.28 (m, 1H), 4.19 - 4.12 (m, 2H), 3.92 - 3.55 (m, 6H), 2.69 - 2.04 (m, 10H). 19F NMR (400 MHz, CD3OD): 8 -111.205, -118.318, -130.257, -174.103. LCMS: 628.20 (M+H+).
Example 13
4-(4-(3,8-diazabicyclo [3.2.1] octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro- HT-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-fluoronaphthalen-2-ol hydrochloride
Figure imgf000172_0001
Synthetic scheme:
Figure imgf000173_0001
Step 1: Synthesis of 7-bromo-6-chloro-8-fluoro-5-methoxy-2-(methylthio)quinazolin-4-ol
Figure imgf000173_0002
[00378] To a solution of MeOH (563 mg, 17.57 mmol, 3.0 eq) in DMF (8 mL) was added NaH (750 mg, 18.74mmol, 3.2 eq, 60% in oil) slowly and the mixture stirred at 0°C for 30min. Then a solution of 7-bromo-6-chloro-5,8-difluoro-2-(methylthio)quinazolin-4-ol (2.0 g, 5.88 mmol, 1.0 eq) in DMF (30 mL) was added dropwise at 0°C. The reaction mixture was stirred at room temperature for 15 h under nitrogen atmosphere. The mixture was poured into aqueous NH4CI, the precipitate formed was collected by fdtration, washed with water (10 mL), dried in vacuo to give crude compound 7-bromo-6-chloro-8-fluoro-5-methoxy-2-(methylthio)quinazolin- 4-ol (1.93 g, crude) as a yellow solid. 1H NMR (300 MHz, DMSO-d ): 3 3.81 (s, 3H), 2.57 (s, 3H). LCMS: m/z 352.9, 354.9 (M + H").
Step 2: Synthesis of 7-bromo-4,6-dichloro-8-fluoro-5-methoxy-2-(methylthio)quinazoline
Figure imgf000174_0001
[00379] To a solution of 7-bromo-6-chloro-8-fluoro-5-methoxy-2-(methylthio)quinazolin-4-ol (1.93 g, 5.46 mmol, 1.0 eq) in POCl3 (15 mL) was added DIEA (3.53 g, 27.29 mmol, 5.0 eq).
Then the reaction mixture was stirred at 90 °C for 2 h. The mixture was concentrated and purified by silica gel chromatography (eluted with PE: EtOAc = 1:1) to give 7-bromo-4,6- dichloro-8-fluoro-5-methoxy-2-(methylthio)quinazoline (680 mg, 31.1% for 2 steps) as yellow solid.
Step 3: Synthesis of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-5-methoxy-2-(methylthio) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000174_0002
[00380] To a solution of 7-bromo-4,6-dichloro-8-fluoro-5-methoxy-2-(methylthio)quinazoline (680 mg, 1.85 mmol, 1.2 eq) and DIEA (597 mg, 4.62mmol, 3.0 eq) in DCM (15 mL) stirring at -40 °C under nitrogen atmosphere was added dropwise tert-butyl (lR,5S)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (327 mg, 1.54 mmol, 1.0 eq) in DCM (5 mL). The mixture was stirring at -40 °C for 2 h. The residue was quenched with IN HC1 (15 mL) and extracted with DCM (30 mL x 3). The organic phase was washed with brine (30 mL), dried with NaiSO4, filtered and concentrated to give residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 5: 1) to give tert-butyl 3-(7-bromo-6-chloro-8- fluoro-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (850 mg, 83.9%) as white solid. LCMS: m/z 547.0, 549.0 (M + H+). Step 4: Synthesis of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000175_0001
[00381] To a solution of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-5-methoxy-2- (methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (200 mg, 0.37 mmol, 1.0 eq) in dioxane (8 mL) and H2O (2 mL) was added 7-bromo-6-chloro-5,8-difluoro-2- (methylthio)quinazolin-4-ol (145 mg, 0.44 mmol, 1.5 eq), K2CO3 (151 mg, 1.10 mmol, 3.0 eq) and Pd (PPhs)4 (43 mg, 0.04 mmol, 0.15 eq). The reaction mixture was stirred at 90 °C for 15 h. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The organic phase was washed with brine (20 mL), dried with Na2SO4, filtered and concentrated to give residue. The residue was purified by silica gel column chromatography (petroleum ether: EtOAc = 20: 1) to give tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l- yl)-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (140 mg, 56.9%) as yellow solid. 1H NMR (300 MHz,DMSO-£76): d 7.80 (d, J= 8.1 Hz, 1H), 7.70 (t, J= 2.1 Hz, 1H), 7.57 - 7.41 (m, 1H), 7.28 (d, J= 2.4 Hz, 1H), 7.13 (dd, J= 13.2, 7.5 Hz, 1H), 5.39 (s, 2H), 4.32 - 4.03 (m, 4H), 3.66 (s, 3H), 3.45 (s, 3H), 3.17 (d, J= 5.1 Hz, 2H), 2.56 (s, 3H), 1.86 - 1.52 (m, 4H), 1.45 (s, 9H). LCMS: m/z 673.2 (M + H+).
Step 5: Synthesis of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-5-methoxy-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000176_0001
[00382] To a solution of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (140 mg, 0.21 mmol, 1.0 eq) in DCM (6.00mL) was added m-CPBA (110 mg, 0.62 mmol, 3.0 eq, 98%) at 0°C. Then the reaction mixture was stirred at room temperature for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with saturated aqueous Na2SO4 (10 mL), saturated aqueous NaHCOs (10 mL) and brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel column chromatography (Petroleum ether/ EtOAc 3:1) to give tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-5-methoxy-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 68.0%) as a yellow solid. LCMS: 705.2 m/z (M + H+).
Step 6: Synthesis of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000176_0002
[00383] To a solution of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3-
(methoxymethoxy)naphthalen-l-yl)-5-methoxy-2-(methylsulfonyl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.14 mmol, 1.0 eq) and ((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (68 mg, 0.43 mmol, 3.0 eq) in THF (5.00 mh) was added LiHMDS (IM in THF) (0.42 mL, 0.42 mmol, 3.0 eq) dropwise at 0 °C. Then the reaction mixture was stirred at 0 °C for 1 h. The mixture was quenched with H2O (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4 and concentrated to give the crude product. The crude product was purified by prep-TLC (DCM/MeOH 20: 1) to give tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 45.5%) as a white solid. 1H NMR (300 MHz,DMSO-c/e): 3 7.79 (d, J= 8.1 Hz, 1H), 7.69 (t, J = 2.1 Hz, 1H), 7.50 (td, J = 7.8, 5.1 Hz, 1H), 7.26 (d, J= 2.1 Hz, 1H), 7.12 (dd, J= 13.2, 7.6 Hz, 1H), 5.41 - 5.17 (m, 3H), 4.35 - 3.92 (m, 6H), 3.66 (s, 3H), 3.45 (s, 3H), 3.42 - 3.34 (m, 1H), 3.18 - 2.80 (m, 5H), 2.20 - 1.68 (m, 10H), 1.45 (s, 9H). LCMS: 784.3(M + H+).
Step 7: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-
2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5- fluoronaphthalen-2-ol hydrochloride
Figure imgf000177_0001
[00384] To a solution of tert-butyl 3-(6-chloro-8-fluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen- 1 -yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 0.064 mmol, 1.0 eq) in DCM (2.00mL) was added HCl/dioxane (4N) (0.5 mL) dropwise at 0 °C. Then the reaction mixture was stirred at room temperature for 2 h. The mixture was concentrated to give a residue. The residue was purified by prep-HPLC (0.1 % FA in H2O/ ACN) to give 4-(4- (3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-fluoronaphthalen-2-ol hydrochloride (3.6 mg, 8.3%) as a white solid. 1H NMR (300 MHz, CD3OD): 3 7.59 (d, J = 8.1 Hz, 1H), 7.46 - 7.27 (m, 2H), 7.01 - 6.81 (m, 2H), 5.50 (d, J= 52.2 Hz, 1H), 4.65 - 4.65 (m, 3H), 4.40 - 4.22 (m, 1H), 4.13 (d, J= 9.6 Hz, 2H), 3.84 - 3.64 (m, 8H), 3.41 - 3.30 (s, 1H), 2.58 - 2.03 (m, 10H). 19F NMR (300 MHz, CD3OD): δ-1 18.277, -130.645, -174.096. LCMS: m/z 640.2 (M+H+).
Example 14
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-5-ol formate
Figure imgf000178_0001
Synthetic scheme:
Figure imgf000179_0001
Step 1: Synthesis of tert-butyl 3-(5-(benzyloxy)-2-chloro-6,8-difluoroquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000179_0002
[00385] To a solution of compound 5-(benzyloxy)-2,4-dichloro-6,8-difluoroquinazoline (900 mg, 2.6 mmol, 1.0 eq) and DIEA (1.2 g, 9.5 mmol, 3.6 eq) in DCM (10 mL) was added tert-butyl (lR,5S)-3,8-diazabicyclo[3.2.1 ]octane-8-carboxylate (840 mg, 4.0 mmol, 1.5 eq) at -40 °C. The reaction mixture was stirred at -40 °C for 2 h under nitrogen atmosphere. The mixture was concentrated to give a residue. The residue was partitioned between DCM (20 mL) and water (10 mL). The layers were separated. The aqueous layer was extracted with DCM (10 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by prep-TLC (PE/EA 5: 1) to give compound tert-butyl 3-(5-(benzyloxy)-2-chloro-6,8-difluoroquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (500 mg, 50.9% for three steps) as a yellow solid.
Figure imgf000180_0001
(300 MHz, CDCL): d 7.36 - 7.28 (m, 4H), 7.23 - 7.15 (m, 2H), 4.87 (s, 2H), 4.54 - 3.83 (m, 4H), 3.46 - 3.21 (m, 2H), 1.85 - 1.58 (m, 4H), 1.45 (s, 9H). LCMS: m/z 517.2 (M + H+).
Step 2: Synthesis of tert-butyl 3-(5-(benzyloxy)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Boc
Figure imgf000180_0002
[00386] A solution of compound tert-butyl 3-(5-(benzyloxy)-2-chloro-6,8-difluoroquinazolin- 4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 0.97 mmol, 1.0 eq), compound ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (185 mg, 1.2 mmol, 1.2 eq), DABCO (108 mg, 0.97 mmol, 1.0 eq), and CS2CO3 (962 mg, 3.0 mmol, 3.0 eq) in THF (5 mL) and DMF (5 mL) was stirred at room temperature for 15 h under nitrogen atmosphere. The mixture was added H2O (20 mL), extracted with EtOAc (10 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over ISfeSO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM / MeOH 20: 1) to give compound tert-butyl 3-(5-(benzyloxy)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (353 mg, 48.5%) as a yellow solid. 'H NMR (300 MHz, C£ OD-d4) 3 7.52 (t, J= 10.5 Hz, 1H), 7.35 - 7.29 (m, 3H), 7.28 - 7.22 (m, 2H), 5.32 (d, J = 54.9 Hz, 1H), 4.97 - 4.90 (m, 4H), 4 61 - 4.58 (m, 1H), 4.27 - 4.14 (m, 4H), 3.39 - 3.36 (m, 1H), 3.30 - 2.97 (m, 4H), 2.40 - 1.72 (m, 10H), 1.48 (s, 9H). LCMS: m/z 640.3 (M + H+).
Step 3: Synthesis of tert-butyl 3-(5-(benzyloxy)-7-bromo-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000181_0001
[00387] To a solution of compound tert-butyl 3-(5-(benzyloxy)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (270 mg, 0.42 mmol, 1.0 eq) in THF (5 mL) was added n-BuLi (0.5 mL, 1.3 mmol, 3.0 eq ) at -65 °C under N2 atmosphere. The mixture was stirred at - 65 °C for 30 min. The mixture was added l,2-dibromo-l,l,2,2-tetrafluoroethane (208 mg, 0.80 mmol, 1.9 eq) at the same temperature, and stirred for 2.5 h. The reaction was quenched with water. The mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and evaporated to dryness The reaction was repeated for two times. The crude product was purified by prep-TLC (DCM/ MeOH 30: 1) to give compound tert-butyl 3-(5-(benzyloxy)-7-bromo-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (200 mg, 66.2%) as a yellow solid. LCMS: m/z 718.2/720.2 (M + H+).
Step 4: Synthesis of tert-butyl 3-(5-(benzyloxy)-6,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000182_0001
[00388] A solution of compound tert-butyl 3-(5-(benzyloxy)-7-bromo-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.14 mmol, 1.0 eq), 2-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane (69 mg, 0.21 mmol, 1.5 eq), K2CO3 (96 mg, 0.70 mmol, 5.0 eq) and Pd(PPh3)4 (24 mg, 0.02 mmol, 0.15 eq) in dioxane (2 mL) and H2O (0.4 mL) was stirred at 100 °C for 15 h under nitrogen atmosphere. The mixture was concentrated to give the crude product. The crude product was purified by Prep- TLC (DCM/MeOH 15/1 ) to give compound tert-butyl 3-(5-(benzyloxy)-6,8-difluoro-7-(8- fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 51.3%) as a white solid. LCMS: m/z 844.3 (M + H+).
Step 5: Synthesis of tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- hydroxyquinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate
Figure imgf000182_0002
[00389] A mixture of compound tert-butyl 3-(5-(benzyloxy)-6,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (55 mg, 0.07 mmol, 1.0 eq) and Pd/C (11 mg, 20 % w/w) in MeOH (2 mL) was stirred at room temperature for 2 h under H2 atmosphere. The mixture was filtered, and the filtrate was concentrated to give crude product. The crude product was purified by Prep-TLC (DCM/MeOH 10/1) to give compound tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-hydroxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (26 mg, 53.1%) as a white solid. LCMS: m/z 754.3 (M + H+).
Step 6: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-5-ol formate (1: 1)
Figure imgf000183_0001
[00390] A solution of compound tert-butyl 3-(6,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-hydroxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (21 mg, 0.03 mmol, 1.0 eq) and HC1 /Dioxane (0.21 mL, 0.84 mmol, 30.0 eq) in DCM (1 mL) was stirred at room temperature for 3 h under nitrogen atmosphere. The reaction was adjusted pH~8 with sat. NaHCCh aqueous. The mixture was extracted with DCM (5 mL x 3). The combined organic layers were washed with brine (2 mL), dried over Na2SO4, fdtered and concentrated to give a crude. The crude was purified by prep-HPLC (HCOOH system) to give 4-(3,8- diazabicyclo[3.2 l ]octan-3-yl)-6,8-difluoro-7-(8-fluoro-3-hydroxynaphthalen-l -yl)-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-5-ol formate (1: 1) (8.6 mg, 47.0%) as a white solid. 1H NMR (300 MHz, CD3OD): 3 8.50 (brs, 1H), 7.57 (d, J= 8.1 Hz, 1H), 7.43 - 7.31 (m, 1H), 7.29 (s, 1H), 7.04 (s, 1H), 6.89 (dd, J= 12.9, 7.5 Hz, 1H), 5.41 (d, J= 51.6 Hz, 1H), 4.55 - 4.30 (m, 5H), 4.09 - 3.97 (m, 2H), 3.62 - 3.45 (m, 5H), 2.52 - 2.40 (m, 1H), 2.39 - 2.13 (m, 6H), 2.06 - 1.90 (m, 3H). 19F NMR (300 MHz, CD3OD): 3 -117.824, -146.324, - 174.200. LCMS: m/z 610.2 (M +H+).
Example 15 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline-6- carboxamide formate
Figure imgf000184_0001
Step 1: Synthesis of tert-butyl 3-(6-carbamoyl-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy) naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000184_0002
[00391 ] To a solution of tert-butyl 3-(6-cyano-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (200 mg, 0.26 mmol, 1.0 eq) in DMSO (2 mL) was added K2CO3 (54 mg, 0.39 mmol, 1.5 eq) and 30% H2O2 (5 drops). The mixture was stirred at room temperature for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with water (5 mL x 3) and brine (5 mL), dried over Na2SO4 and concentrated to give the crude product. The crude product was purified by prep-TLC (DCM: MeOH = 20: 1) to give tert-butyl 3-(6-carbamoyl-5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (30 mg, 60% purity) as a yellow solid. LCMS: m/z 781.3 (M+H+).
Step 2: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazoline-6-carboxamide formate (1: 1)
Figure imgf000185_0001
[00392] To a solution of tert-butyl 3-(6-carbamoyl-5,8-difluoro-7-(8-fluoro-3- (methoxymethoxy) naphthal en-l-yl)-2-(((2R, 7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (30 mg) in ACN (3 mL) was added TFA (1 mL). The mixture was stirred at room temperature for 2 h. The mixture was lyophilization directly to remove the TFA, basified with saturated aqueous NaHCOs (8 mL) and extracted with EtOAc (10 mL x 5). The combined organic layers were dried over Na2SO4 and concentrated to give crude product. The crude product was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 40%) to give compound 4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline-6-carboxamide formate (1 : 1) (3.3 mg, 1 .9% for two steps) as a white solid. 1H NMR (400 MHz, CD3OD): δ 7.55 (d, J= 8.4 Hz, 1H), 7.40 - 7.32 (m, 1H), 7.26 (s, 1H), 7.06 (d, J = 2.4 Hz, 1H), 6.88 (dd, J = 12.8, 7.6 Hz, 1H), 5.48 (d, J= 52.4 Hz, 1H), 4.63 - 4.35 (m, 4H), 4.10 (s, 2H), 3.96 - 3.38 (m, 6H), 2.67 - 2.40 (m, 2H), 2.40 - 2.19 (m, 3H), 2.13 - 2.01 (m, 5H). 19F NMR (300 MHz, CD3OD): d - 113.243, -116.195, -132.670, -174.039. LCMS: m/z 637.2 (M + H+).
Example 16
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-chloronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-
2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline hydrochloride formate (1:1:1)
Figure imgf000186_0001
Synthetic scheme:
Figure imgf000186_0002
Step 1: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-chloronaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline
Figure imgf000187_0001
[00393] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (20 mg, 0.03 mmol, 1.0 eq) in Dioxane (1 mb) and H2O (0.2 mL) was added 2-(8- chloronaphthalen-l-yl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane (14 mg, 0.05 mmol, 1.5 eq), K2CO3 (21 mg, 0.16 mmol, 5.0 eq) and Pd(PPli3)4 (6 mg, 0.01 mmol, 0.15 eq). Then the reaction mixture was stirred at 100 °C for 15 h under N2. The filtrate collected by filtration was concentrated to give a crude. The crude was purified by silica gel column chromatography (DCM : MeOH = 15 : 1) to give 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-chloronaphthalen-l- yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline (20 mg, 88.9%) as a white solid. LCMS: m/z 724.3 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-(8-chloronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate hydrochloride formate (1:1:1)
Figure imgf000187_0002
[00394] To a solution of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-chloronaphthalen-l-yl)-
6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline (20 mg, 0.03 mmol, 1 .0 eq) in DCM (1 mL) was added HCd in dioxane (0.3 mL, 1.2 mmol, 44.4 eq). The mixture was stirred at room temperature for 1 h. The reaction mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (HCOOH system) to give tert-butyl 3-(7-(8-chloronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate hydrochloride formate (1: 1: 1) (4 mg, 20.5%) as a white solid.1H NMR (400 MHz, MeOD-d4): δ 8.51 (brs, 1H), 8.13 (d, J= 8.4 Hz, 1H), 8.01 (d, J= 8.4 Hz, 1H), 7.74 - 7.68 (m, 1H), 7.61 (dd, J= 7.2, 1.2 Hz, 1H), 7.59 - 7.49 (m, 2H), 5.40 (d, J = 53.2 Hz, 1H), 4.53 - 4.34 (m, 3H), 4.23 - 4.10 (m, 1H), 4.08 - 3.92 (m, 2H), 3.89 (s, 3H), 3.73 - 3.42 (m, 5H), 3.25 - 3.09 (m, 1H), 2.52 - 1.93 (m, 10H). 19F NMR (400 MHz, MeOD-d4): δ - 132.682, -136.903, -173.848. LCMS: m/z 624.2 (M +H+).
Example 17
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-methoxyquinazolin-7-yl)-5-fluoronaphthalen-2-ol hydrochloride
Figure imgf000188_0001
Synthetic scheme:
Figure imgf000189_0001
Step 1: Synthesis of tert-butyl 3-(7-bromo-2-chloro-5,8-difluoro-6-methoxyquinazolin-4-yl)-
3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000189_0002
[00395] To a solution of 7-bromo-2,4-dichloro-5,8-difluoro-6-methoxyquinazoline (500 mg, 1.45 mmol, 1.2 eq) in DCM (6.00 mL) was added DIEA (470 mg, 3.63 mmol, 3.0 eq) and a solution of tert-butyl (lR,5S)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (257 mg, 1.21 mmol, 1.0 eq) in DCM (3 mL) dropwise at -40 °C. Then the reaction mixture was stirred at -40 °C for 2 h. The mixture was quenched with H2O (10 mL) and extracted with DCM (8 mL x 3). The combined organic layers were washed with brine (10 mL), dried over NajSCL and concentrated to give the residue. The residue was purified by prep-TLC to give tert-butyl 3-(7-bromo-2- chloro-5,8-difluoro-6-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (600 mg, 79.8 %) as a yellow solid. 1H NMR (300 MHz, CDCl3) 64.31 (s, 2H), 4.19 - 4.05 (m, 2H), 4.01 (d, J= 1.2 Hz, 3H), 3.56 (s, 2H), 1.96 - 1.82 (m, 2H), 1.72 - 1.66 (m, 2H), 1.51 (s, 9H). LCMS: m/z 519.0, 521.0 (M+H+). Step 2: Synthesis of tert-butyl 3-(7-bromo-5,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000190_0001
[00396] To a solution of tert-butyl 3-(7-bromo-2-chloro-5,8-difluoro-6-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (300 mg, 0.58 mmol, 1.0 eq) in THF (5 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (184 mg, 1.15mmol, 2.0 eq), CS2CC>3(563 mg, 1.73 mmol, 3.0 eq) and SPhos Pd G4 (45 mg, 0.06 mmol, 0.1 eq). Then the reaction mixture was stirred at 80 °C for 20 h. The mixture was quenched with H2O (8 mL) and extracted with EtOAc (7 mL x 3). The combined organic layers were washed with brine (8 mL), dried over Na2SO4 and concentrated to give the crude product. The crude product was purified by prep-TLC to give tert-butyl 3-(7-bromo-5,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (80 mg, 36.5%) as a yellow solid. 1HNMR (300 MHz, CDC13): 3 5.30 (d, J= 52.2 Hz, 1H), 4.43 - 3.98 (m, 6H), 3.94 (s, 3H), 3.51 - 2.87 (m, 6H), 2.25 - 1.72 (m, 10H), 1.50 (s, 9H). LCMS: m/z 642.2, 644.2 (M+H+).
Step 3: Synthesis of tert-butyl 3-(5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l- yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000190_0002
[00397] To a solution of tert-butyl 3-(7-bromo-5,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-6-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (80 mg, 0.13 mmol, 1.0 eq) in 1,4-Dioxane (2.0 mL) and H2O (0.5 mL) was added 2- (8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane (62 mg, 0.19 mmol, 1.5 eq), K3PO4 (79.6 mg, 0.38 mmol, 3.0 eq), X-Phos (11.92 mg, 0.025 mmol, 0.2 eq) and Pd2(dba)3 (11.9 mg, 0.013 mmol, 0.1 eq). Then the reaction mixture was stirred at 100 °C for 4 h. The mixture was quenched with H2O (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4 and concentrated to give the crude product. The crude product was purified by prep-TLC to give tert-butyl 3-(5,8- difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (70 mg, 45.5%) as a yellow solid. 'H NMR (300 MHz, DMSO-fife): δ 7.84 - 7.75 (m, 1H), 7.69 (s, 1H), 7.55 - 7.45 (m, 1H), 7.27 (s, 1H), 7.12 (dd, J= 13.5, 7.5 Hz, 1H), 5.50 - 5.28 (m, 3H), 4.34 - 3.91 (m, 8H), 3.63 (s, 3H), 3.45 (s, 3H), 3.01 (s, 1H), 2.24 - 1.66 (m, 10H), 1.45 (s, 9H). LCMS: m/z 768.3 (M + H+).
Step 4: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6-methoxyquinazolin-7-yl)-5- fluoronaphthalen-2-ol hydrochloride (1:1)
Figure imgf000191_0001
[00398] To a solution of tert-butyl 3-(5,8-difluoro-7-(8-fluoro-3-
(methoxymethoxy)naphthalen- 1 -yl)-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)- yl)methoxy)-6-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 0.09 mmol, 1.0 eq) in DCM (LOOmL) was added HCl/dioxane (4 N, 0.5 mL) dropwise at 0 °C. Then the reaction mixture was stirred at room temperature for 2 h. The mixture was concentrated to give a residue. The residue was purified by prep-HPLC (0.1 % FA in H2O/ ACN) to give 4- (4-((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-methoxyquinazolin-7-yl)-5-fluoronaphthalen-2-ol hydrochloride (1:1) (30.1 mg, 51%) as a white solid.
Figure imgf000192_0001
(400 MHz, CD3OD): 3 8.50 (brs, 1H), 7.58 (m, J= 8.4 Hz, 1H), 7.45 - 7.28 (m, 2H), 7.12 - 7.02 (m, J= 2.4 Hz, 1H), 6.90 (dd, J = 13.2, 7.6 Hz, 1H), 5.41 (d, J= 54.0 Hz, 1H), 4.55 - 4.15 (m, 4H), 3.99 (s, 2H), 3.73 - 3.45 (m, 8H), 3.25 - 3.10 (m, 1H), 2.51 - 1.96 (m, 10H). 19F NMR (400 MHz, CD3OD): 3 -117.235, - 131.363, -133.781, -173.916. LCMS: m/z 624.3 (M+H+).
Example 18
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2- ol formate
Figure imgf000192_0002
Synthetic scheme:
Figure imgf000192_0003
Step 1: Synthesis of tert-butyl (3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000193_0001
[00399] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (50 mg, 0.08 mmol, 1.0 eq) and ((2-fluoro-6-(methoxymethoxy)-8-(4,4,5,5- tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (60 mg, 0.12 mmol, 1.5 eq) in Toluene (1.5 mL) and H2O (0.3 mL) was added K3PO4 (33 mg, 0.16 mmol, 2.0 eq), rac-BI-DIME (5 mg, 0.02 mmol, 0.2 eq) and Pd2(dba)3 (11 mg, 0.01 mmol, 0.15 eq). The mixture was heated under microwave irradiation at 120 °C for 1 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and H2O (3 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (3 mL), brine (3 mL), dried over Na2SO4 and concentrated to a crude. The crude was purified by Prep-TLC (DCM / MeOH ~ 15 / 1) to give tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 67.8%) as a yellow solid. LCMS: m/z 474.8 (M/2+H+).
Step 2: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000194_0001
[00400] To a solution of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (30 mg, 0.03 mmol, 1.0 eq) in DCM (1 mL) was added HC1 in dioxane (0.3 mL, 1.2 mmol, 37.5 eq) at room temperature. The mixture was stirred at room temperature for 1 h. The reaction was adjusted to pH~8 with NH3-H2O. The mixture was concentrated to give a residue. The residue was re-dissolved in DCM/MeOH (10/1, 5 mL). The filtrate collected by filtration was concentrated to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl) naphthal en-2-ol (30 mg, crude) as a yellow solid. LCMS: m/z 804.3 (M+H+).
Step 3: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl- 6-fluoronaphthalen-2-ol formate (1:1)
Figure imgf000194_0002
[00401] To a mixture of 4-(4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (30 mg, 0.04 mmol, 1.0 eq) in DMF (1 mL) was added CsF (85 mg, 0.56 mmol, 15.0 eq). The mixture was stirred at 50 °C for 2 h. The filtrate collected by filtration was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 5% to 35%) to give 4-(4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol formate (1: 1) (8.4 mg, 32.4% for two steps) as a white solid. 1H NMR (300 MHz, CD3OD): 3 7.86 (dd, J= 9.3, 5.7 Hz, 1H), 7.39 - 7.27 (m, 2H), 7.12 (d, J= 2.7 Hz, 1H), 5.35 (d, J= 53.4 Hz, 1H), 4.56 - 4.22 (m, 3H), 4.17 - 3.99 (m, 1H), 3.88 (d, J = 1.2 Hz, 3H), 3.86 - 3.74 (m, 2H), 3.68 - 3.34 (m, 6H), 3.12 - 3.08 (m, 1H), 2.43 - 1.87 (m, 10H). 19F NMR (300 MHz, CD3OD): 3 -111.319, -132.635, -137.764, - 173.799. LCMS: m/z 648.2 (M+H+).
Example 19
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3-hydroxynaphthalen-l-yl)-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-6-ol hydrochloride formate
Figure imgf000195_0001
Synthetic scheme:
Figure imgf000196_0001
Step 1: Synthesis of 7-bromo-2,4-dichloro-5,8-difluoroquinazolin-6-ol
Figure imgf000196_0002
[00402] To a solution of compound 7-bromo-2,4-dichloro-5,8-difluoro-6-methoxyquinazoline (300 mg, 0.87 mmol, 1.0 eq) in DCM (3.0 mL) was added a solution of BB (4.4 g,17.4 mmol, 20.0 eq) in DCM (3.0 mL). The reaction mixture was stirred at room temperature for 15 h. The mixture was quenched with water (10 mL) and extracted with DCM (10 mL x 3). The organic phases were washed with brine (10 mL), dried over NazSO4, filtered and concentrated to give 7- bromo-2,4-dichloro-5,8-difluoroquinazolin-6-ol (300 mg, crude) as brown solid. LCMS: m/z 326.8, 328.8 (M-H ).
Step 2: Synthesis of tert-butyl 3-(7-bromo-2-chloro-5,8-difluoro-6-hydroxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Boc
Figure imgf000197_0001
[00403] To a solution of 7-bromo-2,4-dichloro-5,8-difluoroquinazolin-6-ol (300 mg, 0.91 mmol, 1.2 eq) in DCM (10 mL) was added DIEA (294 mg, 2.27 mmol, 3.0 eq) and tert-butyl (lR,5S)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (161 mg, 0.76 mmol, 1.0 eq) dropwise at - 40 °C. The reaction mixture was stirred at -40 °C for 2 h. The mixture was diluted with water (10 mL) and extracted with DCM (10 mL x 3). The organic phases were washed with brine (10 mL), dried with Na2SO4, filtered and concentrated to give residue. The residue was purified by silica gel column chromatography (Petroleum ether: EtOAc = 5: 1) to give tert-butyl 3-(7-bromo-2- chloro-5,8-difluoro-6-hydroxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (400 mg, 91 % for 2 steps) as a brown solid. LCMS: m/z 505.0, 507.0 (M+H+)
Step 3: Synthesis of tert-butyl 3-(7-bromo-2-chloro-5,8-difluoro-6-(methoxymethoxy) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000197_0002
[00404] To a solution of tert-butyl 3-(7-bromo-2-chloro-5,8-difluoro-6-hydroxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (400 mg, 0.79 mmol, 1.0 eq) in DCM (6 mL) was added DIEA (256 mg, 1.98 mmol, 2.5 eq) and Bromomethyl methyl ether (173 mg, 1.38 mmol, 1.75 eq) dropwise at 0 °C. The reaction mixture was stirred at room temperature for 2 h. The mixture was quenched with water (10 mL) and extracted with DCM (10 mL x 3). The organic phase was washed with brine (10 mL), dried with Na2SO4, filtered and concentrated to give residue. The residue was purified by silica gel column chromatography (Petroleum ether: EtOAc = 8: 1) to give tert-butyl 3-(7-bromo-2-chloro-5,8-difluoro-6- (methoxymethoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (270 mg, 62.3 %) as a yellow solid. XH NMR (400 MHz, CDCl3): d 5.22 (s, 2H), 4.40 - 4.07 (m, 4H), 3.66 (s, 3H), 3.61 - 3.39 (m, 2H), 2.06 - 1.66 (m, 4H), 1.51 (s, 9H). LCMS: m/z 549.0, 551.0 (M+H+)
Step 4: Synthesis of tert-butyl 3-(7-bromo-5,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-(methoxymethoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1] octane-8-carboxylate
Figure imgf000198_0001
[00405] To a solution of tert-butyl 3-(7-bromo-2-chloro-5,8-difluoro-6- (methoxymethoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (140 mg, 0.26 mmol, 1.0 eq) in 1,4-dioxane (3 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methanol (81 mg, 0.51 mmol, 2.0 eq), CS2CO3 (249 mg, 0.77 mmol, 3.0 eq) and SPhos Pd G4 (21 mg, 0.026 mmol, 0.1 eq). Then the reaction mixture was stirred at 80 °C for 15 h. The mixture was diluted with water (7 mL) and extracted with EtOAc (7 mL x 3). The organic phase was washed with brine (7 mL), dried with Na2SO4, filtered and concentrated to give residue. The residue was purified by prep-TLC to give tert-butyl 3-(7-bromo-5,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6-(methoxymethoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 35.1 %) as a yellow solid 1 H NMR (300 MHz, DMSO-d6): δ 5.49 - 5.24 (s, 1H), 5.21 (s, 2H), 4.383.88 (m, 6H), 3.58 (s, 3H), 3.48 - 3.32 (M, 2H), 3.27 - 2.73 (m, 4H), 2.38 - 1.54 (m, 11H), 1.44 (s, 9H). LCMS: m/z 672.2, 674.2 (M+H+) Step 5: Synthesis of tert-butyl 3-(5,8-difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6-
(methoxymethoxy) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000199_0001
[00406] To a solution of tert-butyl 3-(7-bromo-5,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-6-(methoxymethoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.15 mmol, 1.0 eq) in 1,4-dioxane (4 mL) was added 2-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane (74 mg, 0.22 mmol, 1 .5 eq), K3PO4 (95 mg, 0.45 mmol, 3.0 eq), H2O (1 mL), X-Phos (14 mg, 0.03 mmol, 0.2 eq) and Pd2(dba)a (14 mg, 0.015 mmol, 0.1 eq). Then the reaction mixture was stirred at 100 °C for 4 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (8 mL), dried with Na2SO4, filtered and concentrated to give residue. The residue was purified by prep-TLC to give tert-butyl 3-(5,8- difluoro-7-(8-fluoro-3-(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6-(methoxymethoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1] octane-8-carboxylate (60 mg, 50.2 %) as a yellow solid. LCMS: m/z 798.2 (M+H+).
Step 6: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-6-ol hydrochloride formate (1:1:1)
Figure imgf000199_0002
[00407] To a solution of tert-butyl (lR,5S)-3-(5,8-difluoro-7-(8-fluoro-3-
(methoxymethoxy)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-6-(methoxymethoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
(60 mg, 0.08 mmol, 1.0 eq) in DCM (1.5 mL) was added HCl/dioxane (4N) (0.5 mL) dropwise at 0 °C. Then the reaction mixture was stirred at room temperature for 1 h. The mixture was concentrated to give a residue. The residue was purified by prep-HPLC (0.1 % FA in H2O/ ACN) to give 4-((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)-5,8-difluoro-7-(8-fluoro-3- hydroxynaphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-6-ol hydrochloride formate (1: 1: 1) (23.1 mg, 42 %) as a white solid. JH NMR (400 MHz, CD3OD): 38.48 (brs, 2H), 7.56 (d, J= 8.4 Hz, 1H), 7.46 - 7.31 (m, 1H), 7.28 (s, 1H), 7.10 - 7.00 (m, 1H), 6.94 - 6.87 (m, 1H), 5.46 (d, J= 52.8 Hz, 1H), 4.55 - 4.43 (m, 2H), 4.32 - 4.18 (m, 2H), 4.08 (s, 2H), 3.80 - 3.54 (m, 5H), 3.30 - 3.24 (m, 1H), 2.62 - 2.02 (m, 10H). 19F NMR (400 MHz, CD3OD): 3 -117.825, -133.947, -139.261, -174.041. LCMS: m/z 610.2 (M+H+).
Example 20
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(5-chloro-6-methyl-lH-indazol-4-yl)-6,8-difluoro-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline hydrochloride formate (1:1:1)
Figure imgf000200_0001
Synthesis scheme
Figure imgf000201_0001
Step 1: Synthesis of tert-butyl 3-(7-(5-chloro-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-lH- indazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000201_0002
[00408] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (50 mg, 0.08 mmol, 1.0 eq) in Dioxane (1 mb) and HzO (0.2 mL) was added 5- chloro-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)- IH-indazole (44 mg, 0.12 mmol, 1.5 eq), K2CO3 (54 mg, 0.39 mmol, 5.0 eq) and Pd(PPh3)4 (14 mg, 0.01 mmol, 0.15 eq). The reaction mixture was stirred at 100 °C for 15 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and water (2 mL). The layers were separated. The aqueous layer was extracted with EtOAc (10 mL x 3). The combined organic layers were washed with brine (5 mL), dried over NazSO4, filtered and concentrated to give a crude. The crude was purified by Prep-TLC (DCM : MeOH = 15 : 1) to give tert-butyl 3-(7-(5- chloro-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-lH-indazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 78.9%) as a brown solid. LCMS: m/z 812.2 (M+H+).
Step 2: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(5-chloro-6-methyl-lH-indazol- 4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline hydrochloride formate (1:1:1)
Figure imgf000202_0001
[00409] To a solution of tert-butyl 3-(7-(5-chloro-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-lH- indazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (10 mg, 0.012 mmol, 1.0 eq) in DCM (1 mb) was added HC1 in dioxane (0.03 mL, 0.12 mmol, 10.0 eq) at room temperature. The mixture was stirred at room temperature for 1 h. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (HCOOH system) to give the product 4- (3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(5-chloro-6-methyl-lH-indazol-4-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline hydrochloride formate (1 :1 :1) (4.4 mg, 58.4%) as a white solid. 1H NMR (400 MHz, CD3OD): 3 8.55 (brs, 1H), 7.66 (d, J= 4.8 Hz, 2H), 5.37 (d, J= 53.2 Hz, 1H), 4.45 - 4.25 (m, 4H), 3.91 (s, 3H), 3.82 (s, 2H), 3.58 (d, J= 13.2 Hz, 2H), 3.49 - 3.34 (m, 3H), 3.16 - 3.03 (m, 1H), 2.60 (s, 3H), 2.45 - 1.89 (m, 10H). 19F NMR (400 MHz, CD3OD): 3 -131.101, -137.885, -173.777. LCMS: m/z 628.2 (M+H+).
Example 21 methyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate formate
Figure imgf000203_0001
Step 1: Synthesis of methyl 3-(6,8-difluoro-7-(7-fluoro-3-((methoxycarbonyl)oxy)-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000203_0002
[00410] To a solution of 4-(4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahy dro- 1 H-pyrrolizin-7a(5H)-yl)methoxy)-5 -methoxy quinazolin-7 -yl)-6-fluoro-5 - ((triisopropylsilyl)ethynyl)naphthalen-2-ol (60 mg, 0.07 mmol, 1 .0 eq) in DCM (1 m ) was added TEA (23 mg, 0.22 mmol, 3.0 eq) and dimethyl dicarbonate (10 mg, 0.07 mmol, 1.0 eq) at 0 °C. The reaction mixture was stirred at room temperature for 1 h under N2. The mixture was concentrated to give methyl 3-(6,8-difluoro-7-(7-fluoro-3-((methoxycarbonyl)oxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, crude) as a yellow solid. LCMS: m/z 460.7 (M/2+H+).
Step 2: Synthesis of methyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate formate (1:1)
Figure imgf000204_0001
[00411] To a mixture of methyl 3-(6,8-difluoro-7-(7-fluoro-3-((methoxycarbonyl)oxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 0.07 mmol, 1.0 eq) in DMF (1 m ) was added CsF (159 mg, 1.0 mmol, 15.0 eq). The mixture was stirred at 50 °C for 2 h. The fdtrate collected by fdtration was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 15% to 50%) to give methyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2 l]octane-8-carboxylate formate (1: 1) (17.4 mg, 31.0% for two steps) as a white solid.1H NMR (400 MHz, CD3OD): 3 7.86 (dd, J= 9.2, 5.6 Hz, 1H), 7.38 - 7.27 (m, 2H), 7.13 (d, J= 2.4 Hz, 1H), 5.35 (d, J= 53.6 Hz, 1H), 4.51 - 4.20 (m, 5H), 4.12 - 3.98 (m, 1H), 3.86 (s, 3H), 3.76 (s, 3H), 3.59 (d, J= 13.2 Hz, 1H), 3.49 - 3.34 (m, 4H), 3.15 - 3.05 (m, 1H), 2.46 - 2.14 (m, 3H), 2.11 - 2.02 (m, 2H), 2.00 - 1 .81 (m, 4H), 1.79 - 1.63 (m, 1H). 19F NMR (400 MHz, CD3OD): 8 -111.338, -132.816, -138.120, -173.718. LCMS: m/z 706.2 (M+H+).
Example 22
Methyl 3-(7-(8-ethynyl-7-fluoro-3-((methoxycarbonyl)oxy) naphthalen-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate formate (1:1)
Figure imgf000205_0001
Step 1: Synthesis of methyl 3-(7-(8-ethynyl-7-fluoro-3-((methoxycarbonyl)oxy)naphthalen- l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate formate (1:1)
Figure imgf000205_0002
[00412] To a solution of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate (50 mg, 0.07 mmol, 1.0 eq) in DCM (1 mL) was added TEA (23 mg, 0.22 mmol, 3.0 eq) and dimethyl dicarbonate (24 mg, 0.18 mmol, 2.5 eq) at 0 °C. The reaction mixture was stirred at room temperature for 1 h under N2. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 15% to 50%) to give methyl 3-(7-(8-ethynyl-7-fluoro-3-((methoxycarbonyl)oxy)naphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate formate (1 : 1) (17.4 mg, 25.3%) as a white solid.
Example 23
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-7-fluorobenzo[d]thiazol-2-amine hydrochloride formate (1:1:1)
Figure imgf000206_0001
Step 1: Synthesis of compound tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-7- fluorobenzo[d]thiazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000207_0001
[00413] To a solution of compound tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (80 mg, 0.12 mmol, 1.0 eq) in 1,4-dioxane (3 mb) and H2O (1 mL) was added K3PO4 (48 mg, 0.22 mmol, 1.8 eq), (2-((tert-butoxycarbonyl)amino)-7- fluorobenzo[d]thiazol-4-yl)boronic acid (58 mg, 0.19 mmol, 1.5 eq) and Pd(dtbpf)C12 (16 mg, 0.02 mmol, 0.2 eq) at room temperature. The reaction mixture was heated to 90 °C and stirred for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over NaiSO4 and concentrated to give a residue. The crude product was purified by prep-TLC (di chloromethane : Methanol = 10 : 1) to give tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-7-fluorobenzo[d]thiazol-4-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-4-yl)-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (60 mg, 58.0%) as a yellow solid. LCMS: m/z 830.2 (M+H+).
Step 2: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-7- fluorobenzo[d]thiazol-2-amine hydrochloride formate (1:1:1)
Figure imgf000207_0002
[00414] To a solution of compound tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-7- fluorobenzo[d]thiazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 0.07 mmol, 1.0 eq) in DCM (1 mL) was added HC1 in dioxane (0.5 mL, 4M in dioxane) at room temperature. The reaction was stirred at room temperature for 1 h. The product was concentrated to give a crude. The crude was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 20% to 60%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahy dro- 1 H-pyrrolizin-7a(5H)-yl)methoxy)-5 -methoxy quinazolin-7 -yl)-7- fluorobenzo[d]thiazol-2-amine hydrochloride formate (1 : 1 : 1) (16.2 mg, 35.6%) as a white solid. 1H NMR (400 MHz, CD3OD): d 7.61 - 7.43 (m, 1H), 7.29 - 7.13 (m, 1H), 5.60 (d, J= 51.2 Hz, 1H), 4.86 - 4.82 (m, 2H), 4.82 - 4.47 (m, 2H), 4.32 - 4.20 (m, 2H), 4.08 (s, 3H), 4.05-3.82 (m, 5H), 3.52-3.43 (m, 1H), 2.85 - 2.56 (m, 2H), 2.56 - 2.43 (m, 1H), 2.43 - 2.30 (m, 2H), 2.30 - 2.20 (m, 1H), 2.20 - 2.00 (m, 4H). 19F NMR (400 MHz, CD3OD): 8 -113.813, -133.894, - 134.341, -174.152. LCMS: m/z 630.2 (M+H+).
Example 24
4-(4-(8-acetyl-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro -2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-
6-fluoronaphthalen-2-yl acetate formate (1: 1)
Figure imgf000208_0001
Step 1: Synthesis of 4-(4-(8-acetyl-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-
Figure imgf000208_0002
[00415] To a solution of 4-(4-(3,8-diazabicyclo[3.2.1 ]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate (50 mg, 0.07 mmol, 1.0 eq) in DCM (1 mL) was added TEA (23 mg, 0.22 mmol, 3.0 eq) and acetyl chloride (15 mg, 0.19 mmol, 2.5 eq) at 0 °C. The reaction mixture was stirred at room temperature for 1 h under N2. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 15% to 50%) to give 4-(4-(8-acetyl-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-yl acetate formate (1: 1) (17.4 mg, 25.3%) as a white solid. 1H NMR (400 MHz, CD3OD): δ 8.08 (dd, J= 9.2, 5.6 Hz, 1H), 7.88 (d, J= 2.4 Hz, 1H), 7.48 (t, J= 8.8 Hz, 1H), 7.42 (d, J= 2.4 Hz, 1H), 5.32 (d, J= 53.4 Hz, 1H), 4.72 (dd, J= 19.2, 6.6 Hz, 1H), 4.59 - 4.36 (m, 2H), 4.28 - 4.20 (m, 2H), 4.16 - 4.05 (m, 1H), 3.87 (s, 3H), 3.57 (d, J= 15.6 Hz, 1H), 3.51 - 3.46 (m, 1H), 3.44 - 3.36 (m, 2H), 3.26 (s, 2H), 3.21 - 3.11 (m, 1H), 2.34 - 2.22 (m, 5H), 2.17 (s, 4H), 2.16 - 2.04 (m, 4H), 2.03 - 1.89 (m, 3H). 19F NMR (400 MHz, CD3OD): 6 - 106.887, -132.375, -138.313, -173.657. LCMS: m/z 732.2 (M+H+).
Example 25
4-(3,8-diazabicyclo [3.2.1] octan-3-yl)-7-(8-ethynyl-7-fluoro naphthalen-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline formate
Figure imgf000209_0001
Synthetic scheme
Figure imgf000210_0001
Step 1: Synthesis of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000210_0002
[00416] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (50 mg, 0.07 mmol, 1.0 eq) in PhMe (1 mL) and H2O (0.2 mL) was added ((2- fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (45.2 mg, 0.10 mmol, 1.5 eq), Pdi(dba)3 (9.1 mg, 0.01 mmol, 0.15 eq), rac-BI-DIME (4.6 mg, 0.01 mmol, 0.2 eq) and K3PO4 (29.7 mg, 0.14 mmol, 2.0 eq). The mixture was heated at 120 °C for 1 h by microwave. The mixture was filtered, and the filtrate was concentrated to give a crude. The crude was purified by prep-TLC (DCM : MeOH = 15 : 1) to give tert-butyl 3-(6,8-difluoro- 7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-1 -yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (50 mg, 72.3%) as a yellow solid. LCMS: m/z 444.8 (M/2+H+).
Step 2: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazoline
Figure imgf000211_0001
[00417] To a solution of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 0.05 mmol, 1.0 eq) in DCM (1 mL) was added HCl/dioxane (0.2 mL) at 0 °C. The reaction mixture was stirred at 0 °C for 1.5 h under N2. The mixture was concentrated to give 4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (60 mg, crude) as a yellow solid. LCMS: m/z 788.2 (M+H+).
Step 3: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7-fluoronaphthalen- l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline formate (1:1)
Figure imgf000211_0002
[00418] To a solution of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazoline (60 mg, 0.07 mmol, 1.0 eq) in DMF (1.5 mL) was added CsF (159 mg, 1 .0 mmol, 20.0 eq). The mixture was stirred at 50 °C for 3 h. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 10% to 50%) to give 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazoline formate (1 : 1) (12.5 mg, 35.2%, two steps yield) as a white solid. 1H NMR (400 MHz, CD3OD): 3 8.44 (s, 1H), 8.14 - 8.10 (m, 2H), 7.66 (t, J= 7.6 Hz, 1H), 7.56 (d, J= 7.2 Hz, 1H), 7.46 (t, J= 8.8 Hz, 1H), 5.42 (d, J= 51.0 Hz, 1H), 4.52 - 4.46 (m, 3H), 4.21 - 4.01 (m, 3H), 3.90 (s, 3H), 3.80 - 3.50 (m, 5H), 3.45 (s, 1H), 3.25 (s, 1H), 2.44 - 1.89 (m, 10H). 19F NMR (400 MHz, CD3OD): 3 -106.313, -132.541, -136.720, -173.989. LCMS: m/z 632.3 (M+H+).
Example 26 l-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin -7-yl)-8-ethynyl-7-fluoroisoquinolin-3- amine
Figure imgf000212_0001
Synthetic scheme:
Figure imgf000213_0001
Step 1: Synthesis of tert-butyl 3-(7-(3-(bis(4-methoxybenzyl)amino)-7-fluoro-8- ((triisopropylsilyl) ethynyl)isoquinolin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000213_0002
[00419] To a solution of compound tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (100 mg, 0.18 mmol, 1.0 eq) in THF (3 mL) was added (TMP)zZn MgCl3 LiCl (1.35 mb, 0.54 mmol, 3.0 eq, 0.4 M in THF) under nitrogen atmosphere. The reaction was stirred at 50 °C for 2 h. To the reaction was added 3-(bis(4-methoxybenzyl)amino)-7-fluoro-8- ((triisopropylsilyl)ethynyl)isoquinolin-l-yl trifluoromethanesulfonate (153 mg, 0.21 mmol, 1.2 eq) and RuPhos Pd G2 (15 mg, 0.02 mmol, 0.1 eq) in dioxane (1 mL) under nitrogen atmosphere. The reaction was stirred at 50 °C for 15 h. The residue was partitioned between EtOAc (10 mL) and water (10 mL). The layers were separated. The aqueous layer was extracted with EtOAc (10 mL x 3). The combined organic layers were washed with brine (10 mL), dried over MgSCL and evaporated to dryness. The crude product was purified by silica gel column chromatography (dichloromethane: methanol = 40: 1) to give tert-butyl 3-(7-(3-(bis(4- methoxybenzyl)amino)-7-fluoro-8-((triisopropylsilyl)ethynyl)isoquinolin-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (80 mg, 39.4%) as a yellow oil. 'H \\1R (400 MHz, CDCl3): δ 7.51 - 7.43 (m, 1H), 7.25 - 7.20 (m, 1H), 7.18 (d, J = 8.4 Hz, 4H), 6.83 (d, J = 8.4 Hz, 4H), 6.62 (s, 1H), 5.40 - 5.18 (m, 1H), 4.78 - 4.65 (m, 4H), 4.52 - 4.00 (m, 6H), 3.92 (s, 3H), 3.78 (s, 6H), 3.58 - 3.46 (m, 1H), 3.44 - 3.08 (m, 4H), 3.04 - 2.91 (m, 1H), 1.95 - 1.83 (m, 4H), 1.76 - 1.56 (m, 4H), 1.50 (s, 9H), 0.94 - 0.80 (m, 21H), 0.74 - 0.65 (m, 3H).
Step 2: Synthesis of l-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-7-fluoro-8- ((triisopropylsilyl)ethynyl)isoquinolin-3-amine
Figure imgf000214_0001
[00420] To a solution of compound tert-butyl 3-(7-(3-(bis(4-methoxybenzyl)amino)-7-fluoro- 8-((triisopropylsilyl)ethynyl)isoquinolin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (80 mg, 0.07 mmol, 1.0 eq) in DCM (2 mL) was added TFA (2 mL). The reaction was stirred at room temperature for 1 h. The mixture was partitioned between DCM (10 mL) and aqueous sodium bicarbonate solution (10 mL). The layers were separated. The aqueous layer was extracted with DCM (10 mL x 3). The combined organic layers were washed with brine (10 mL), dried over MgSCL and evaporated to dryness. The crude product was purified by prep-TLC (di chloromethane: methanol = 8: 1) to give l-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-7-yl)-7-fluoro-8-((triisopropylsilyl)ethynyl)isoquinolin-3-amine (30 mg, 53.4%) as a yellow solid. LCMS: m/z 804.3 (M+H+). Step 3: Synthesis of l-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-8-ethynyl- 7-fluoroisoquinolin-3-amine
Figure imgf000215_0001
[00421] To a solution of compound l-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-7- fluoro-8-((triisopropylsilyl)ethynyl)isoquinolin-3-amine (30 mg, 0.04 mmol, 1.0 eq) in DMF (1 mL) was added CsF (60.8 mg, 0.4 mmol, 10.0 eq). The reaction was stirred at 40 °C for 1 h. The mixture was fdtered and the fdtrate was concentrated to give a crude. The crude product was purified by prep-TLC (dichloromethane: methanol = 3: 1) to give l-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-8-ethynyl-7-fluoroisoquinolin-3-amine (13 mg, 53.7%) as a yellow solid. 1H NMR (300 MHz, CD3OD): 3 7.82 -.71 (m, 1H), 7.43 (t, J= 9.0 Hz, 1H), 7.01 (s, 1H), 5.34 (d, J= 53 7 Hz, 1H), 4.54 - 4.38 (m, 1H), 4.38 - 4.21 (m, 2H), 4.12-3.99 (m, 1H), 3.88 (s, 3H), 3.82-3.70 (m, 2H), 3.69 - 3.57 (m, 1H), 3.52 - 3.49 (m, 1H), 3.48 - 3.35 (m, 2H), 3.30 - 3.24 (m, 2H), 3.12 - 3.02 (m, 1H), 2.44 - 2.12 (m, 4H), 2.11 - 1.95 (m, 4H), 1.93-1.86 (m, 2H). 19F NMR (300 MHz, CD3OD): 5 -110.415, -133.668, -139.835, -173.726. LCMS: m/z 648.2 (M+H+).
Example 27
6-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-4-methyl-5- (trifluoromethyl)pyridin-2-amine hydrochloride
Figure imgf000216_0001
Synthesis scheme
Figure imgf000216_0002
Step 1: Synthesis of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000216_0003
[00422] To a solution of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (100 mg, 0.18 mmol, 1.0 eq) in THF (1 mL) was added (TMP)iZn MgCl3 LiCl (2.0 mL, 0.78 mmol, 4.4 eq). The reaction mixture was stirred at 50 °C for 2 h under N2. To the reaction mixture was added a solution of 6-bromo-N,N-bis(4-methoxybenzyl)-4-methyl-5- (trifluoromethyl)pyridin-2-amine (114 mg, 0.23 mmol, 1.3 eq) and CPhos Pd G3 (15 mg, 0.02 mmol, 0.1 eq) in dioxane (1 mL). The reaction mixture was stirred at 80 °C for 12 h. The reaction was quenched with aq. NaHCO3 solution (5 mL). The mixture was fdtered through a Celite pad and washed with EtOAc. The fdtrate was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4, fdtered and concentrated to give a crude. The crude was purified by Prep-TLC (DCM : MeOH = 15 : 1) to give teit-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3-(trifluoromethyl)pyridin-2-yl)- 6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 34.5%) as a white solid. LCMS: m/z 978.3 (M+H+).
Step 2: Synthesis of 6-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-4-methyl- 5-(trifluoromethyl)pyridin-2-amine hydrochloride (1:1)
Figure imgf000217_0001
[00423] A solution of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 0.06 mmol, 1.0 eq) in TFA (2 mL) was stirred at 50 °C for 2 h. The reaction mixture was dried by lyophilization to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 10% to 45%) to give the product. The product was dried by lyophilization with HC1 in EtOH to give 6-(4-((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluoro tetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-4-methyl-5- (trifluoromethyl)pyridin-2-amine hydrochloride (1 : 1) (24.5 mg, 59.7%) as a white solid. JH NMR (300 MHz, CD3OD): 37.00 (s, 1H), 5.59 (d, J= 52.2 Hz, 1H), 4.86 - 4.71 (m, 2H), 4.66 - 4.42 (m, 2H), 4.23 (s, 2H), 4.10 - 3.82 (m, 8H), 3.58 - 3.37 (m, 1H), 2.85 - 2.16 (m, 10H), 2.14 - 1 .09 (m, 3H) 19F NMR (300 MHz, CD3OD): δ -57.678, -133.525, -136.972, -174.107. LCMS: m/z 638.3 (M+H+).
Example 28
5-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N- isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide 2,2,2- trifluoroacetate
Figure imgf000218_0001
Synthetic scheme:
Figure imgf000219_0001
Step 1: Synthesis of 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N-isopropyl-
5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000220_0001
[00424] To a solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (227 mg, 0.855 mmol, 1.0 eq) in DCM (5.0 mL) was added DIEA (331 mg, 2.56 mmol, 3.0 eq) and a solution of N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l ,4]diazepine-2-carboxamide (190 mg, crude) in DCM (3.0 mL) at -20°C under N2. The mixture was stirred at -20 °C for 2 h. The mixture was diluted with water (20 mL) and extracted with DCM (20 mL x 3). The combined organic phase was washed with brine (20 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel chromatography (DCM/MeOH = 80/1) to give 5- (2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (230 mg, 49.8% for two steps) as a white solid. LCMS: m/z 451.10 (M+H+).
Step 2: Synthesis of 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a] [l,4]diazepine-2-carboxamide
Figure imgf000220_0002
[00425] To a solution of 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N-isopropyl- 5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (210 mg, 0.47 mmol, 1.0 eq) in 1,4-Dioxane (5.0 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methanol (111 mg, 0.70 mmol, 1.5 eq), CS2CO3 (455 mg, 1.40 mmol, 3.0 eq) and SPhos Pd G4 (37.3 mg, 0.05 mmol, 0.1 eq). Then the reaction mixture was stirred at 100 °C for 12 h. The mixture was diluted with water (15 mL) and extracted with EtOAc (15 mL x 3). The combined organic phase was washed with brine (15 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residual, which was purified by prep-TLC (DCM/MeOH = 10/1) to give 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine-2-carboxamide (140 mg, 52.4%) as a yellow solid. 1H NMR (300 MHz, CDCl3): δ 7.32 - 7.27 (m, 1H), 6.69 (s, 1H), 6.60 (d, J= 8.1 Hz, 1H), 5.33 (d, J= 54.0 Hz, 1H), 4.90 - 4.78 (m, 2H), 4.40 - 4.34 (m, 2H), 4.29 - 4.16 (m, 3H), 3.94 - 3.86 (m, 2H), 3.67 (s, 3H), 3.53 - 3.27 (m, 3H), 3.07 - 2.97 (m, 1H), 2.24 - 1.92 (m, 8H), 1.23 (d, J= 6.3 Hz, 6H). LCMS: m/z 574.2 (M+H+).
Step 3: Synthesis of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro- 4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000221_0001
[00426] To a solution of 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (140 mg, 0.244 mmol, 1.0 eq) in THF (6.0 mb) was added n-BuLi (2.5M in THF, 0.4 mb, 0.976 mmol, 4.0 eq) dropwise at -65 °C. The reaction mixture was stirred at -65 °C for 1 h. Then l,2-dibromo-l,l,2,2-tetrafluoroethane (64 mg, 0.244 mmol, 1.0 eq) was added and stirred at -65 °C for 1.5 h. The mixture was diluted with water (15 mb) and extracted with EtOAc (10 mb X 3). The combined organic phase was washed with brine (10 mL), dried over Na2SOr and concentrated to give a residue. The residue was purified by silica gel chromatography (eluted with DCM/MeOH = 10/1) to give 5-(7-bromo-6,8-difluoro- 2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (84 mg, 52.7%) as a yellow solid. 1H NMR (300 MHz, CDCl3): 6.98 - 6.74 (m, 1H), 6.60 (d, J = 8.4 Hz, 1H), 5.41 (d, J= 54 3 Hz, 1H), 5.05 - 4.78 (m, 2H), 4.46 - 4.13 (m, 5H), 3.94 (s, 3H), 3.75 (s, 3H), 3.50 - 3.05 (m, 3H), 2.47 - 2.04 (m, 8H), 1.23 (d, J= 6.6 Hz, 6H). LCMS: m/z 652.1 (M+H+).
Step 4: Synthesis of 5-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000222_0001
[00427] To a solution of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (60 mg, 0.09 mmol, 1.0 eq) and ((2-fluoro-6- (methoxymethoxy )- 8 -(4, 4, 5 , 5 -tetramethyl - 1 , 3 , 2-di oxab orol an-2-y l)naphthal en- 1 - yl)ethynyl)triisopropylsilane (52 mg, 0.10 mmol, 1.1 eq) in Toluene (5.0 mL) and H2O (1.0 mL) was added Pd2(dba)s (13 mg, 0.014 mmol, 0.15 eq), rac-BI-DIME (9.3 mg, 0.03 mmol, 0.3 eq) and K3PO4 (39 mg, 0.18 mmol, 2.0 eq). The mixture was stirred at 100 °C for 6 h. The reaction mixture was diluted with water (10 mL) and extracted with EtOAc (15 mL x 3). The organic phase was washed with brine (10 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residual, which was purified by silica gel column chromatography (DCM/MeOH = 80/1) to give 5-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (40 mg, 45.4%) as a yellow solid. LCMS: m/z 958.4 (M+H+).
Step 5: Synthesis of 5-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4fl-pyrazolo[l,5- a] [l,4]diazepine-2-carboxamide
Figure imgf000223_0001
[00428] To a solution of 5-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl) ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (40 mg, 0.042 mmol, 1.0 eq) in DCM (3 mL) was added HC1 (4M in Dioxane) (3.0 mL). The mixture was stirred at room temperature for 2 h. The mixture was concentrated under reduced pressure to give 5-(6,8-difluoro-7-(7-fluoro-3-hydroxy- 8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (38 mg, crude) as a white solid. LCMS: m/z 914.3 (M+H+).
Step 6: Synthesis of 5-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide 2,2,2- trifluoroacetate (1:0.33)
Figure imgf000223_0002
[00429] To a solution of 5-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l ,5-a][l ,4]diazepine-2-carboxamide (38 mg, 0.042 mmol, 1 .0 eq) in DMF (2 mL) was added CsF (31.6 mg, 0.21 mmol, 5.0 eq). The mixture was stirred at room temperature for 3 h. The mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 40%) to give 5-(7-(8-ethynyl-7- fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide 2,2,2-trifluoroacetate (1 :0.33) (21 mg, 66.1% for two steps) as a white solid. 1H NMR (300 MHz, CD3OD): d 7.87 (dd, J= 9.0, 5.7, Hz, 1H), 7.38 - 7.30 (m, 2H), 7.17 - 7.12 (m, 1H), 6.73 (d, J= 3.3 Hz, 1H), 5.53 (d, J= 52.5 Hz, 1H), 5.14 - 5.02 (m, 2H), 4.60 - 4.35 (m, 4H), 4.22 - 4.08 (m, 3H), 3.97 - 3.77 (m, 6H), 3.46 - 3.35 (m, 2H), 2.59 - 2.04 (m, 8H), 1.23 (d, J= 6.6 Hz, 6H). 19F NMR (300 MHz, CD3OD): 8 -76.901, - 111.176, -133.050, -136.703, -174.109. LCMS: m/z 758.3 (M+H+).
Example 29
4-(4-((3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2- yl acetate formate (1: 1)
Figure imgf000224_0001
Synthetic scheme:
Figure imgf000225_0001
Step 1: Synthesis of tert-butyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000225_0002
[00430] To a mixture of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 0.05 mmol, 1.0 eq) in DMF (1 mb) was added CsF (159 mg, 1.0 mmol, 20.0 eq). The mixture was stirred at 50 °C for 3 h. The filtrate collected by filtration was concentrated to give tert-butyl (lR,5S)-3-(7-(8- ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1 ]octane-8- carboxylate (60.0 mg, crude) as a yellow solid. LCMS: m/z 748.2 (M+H+). Step 2: Synthesis of tert-butyl 3-(7-(3-acetoxy-8-ethynyl-7-fluoronaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000226_0001
[00431] To a solution of tert-butyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (40 mg, 0.05 mmol, 1.0 eq) in DCM (1 mL) was added TEA (16.2 mg, 0.16 mmol, 3.0 eq) and acetic anhydride (6.5 mg, 0.06 mmol, 1.2 eq) at 0 °C. The reaction mixture was stirred at room temperature for 1 h under N2. The mixture was concentrated to give tert-butyl 3-(7-(3-acetoxy-8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (35 mg, crude) as a yellow solid. LCMS: m/z 790.2 (M+H+).
Step 3: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-
6-fluoronaphthalen-2-yl acetate formate
Figure imgf000226_0002
[00432] To a solution of tert-butyl 3-(7-(3-acetoxy-8-ethynyl-7-fluoronaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (35 mg, 0.04 mmol, 1.0 eq) in DCM (1 mL) was added TFA (0.3 mL) at 0 °C. The reaction mixture was stirred at room temperature for 1 h under N2. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 15% to 50%) to give 4-(4-((lR,5S)-3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-yl acetate formate (1 : 1) (12.1 mg, 39.4%, three steps yield) as a white solid. 1H NMR (400 MHz, CD3OD): 3 8.10 (dd, J= 9.2, 5.6 Hz, 1H), 7.90 (d, J= 2.4 Hz, 1H), 7.49 (t, J= 8.8 Hz, 1H), 7.42 (d, J= 2.4 Hz, 1H), 5.50 (d, J= 52.0 Hz, 1H), 4.60 - 4.56 (m, 3H), 4.14 (d, J= 19.2 Hz, 3H), 3.92 (d, J= 1.2 Hz, 3H), 3.76 (d, J= 12.4 Hz, 4H), 3.63 - 3.54 (m, 2H), 3.36 (s, 1H), 2.72 - 2.55 (m, 2H), 2.51 (s, 3H), 2.49 - 2.08 (m, 8H). 19F NMR (400 MHz, CD3OD): 5 -106.681, -132.374, -136.169, -174.181. LCMS: m/z 690.0 (M+H+).
Example 30
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazolin-7-yl)-2-amino-7- fluorobenzo[b]thiophene-3-carbonitrile 2,2,2-trifluoroacetic acid hydrochloride formate
Figure imgf000227_0001
Synthetic scheme:
Figure imgf000228_0001
Step 1: Synthesis of compound tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000228_0002
[00433] To a solution of compound tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (80 mg, 0.12 mmol, 1.0 eq) in 1,4-Dioxane (3 mL) and H2O (1 mL) was added K3PO4 (48 mg, 0.22 mmol, 1.8 eq), tert-butyl (3-cyano-7-fluoro-4- (4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzo[b]thiophen-2-yl)carbamate (78 mg, 0.19 mmol, 1.5 eq) and Pd(dtbpf)C12 (16 mg, 0.025 mmol, 0.2 eq) at room temperature. The reaction mixture was stirred at 90 °C for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (di chloromethane: methanol = 10: 1) to give tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3- cyano-7-fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (55 mg, 51.9%) as a yellow solid. LCMS: m/z 854.3 (M+H+).
Step 2: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-2-amino-7- fluorobenzo[b]thiophene-3-carbonitrile 2,2,2-trifluoroacetic acid hydrochloride formate (1: 1: 1)
Figure imgf000229_0001
[00434] To a solution of compound tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano- 7-fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (55 mg, 0.06 mmol, 1.0 eq) in DCM (2 mL) was added HC1 in dioxane (1 mL, 4 M in dioxane) at room temperature. The reaction was stirred at room temperature for 1 h. The product was concentrated to give a crude. The crude was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 20% to 60%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-2- amino-7-fluorobenzo[b]thiophene-3-carbonitrile 2,2,2-trifluoroacetic acid hydrochloride formate (1: 1 : 1) (9.7 mg, 23.0%) as a white solid. XH NMR (300 MHz, CD3OD): δ 8.53 (brs, 0.4H), 7.30 (dd, J= 8.4, 5.1 Hz, 1H), 7.05 (t, J= 9.3 Hz, 1H), 5.37 (d, J= 52.8 Hz, 1H), 4.41 - 4.21 (m, 4H), 3.90 (s, 3H), 3.86 - 3.77 (m, 2H), 3.64 - 3.47 (m, 3H), 3.46 - 3.35 (m, 2H), 3.19 - 3.05 (m, 1H), 2.50 - 2.28 (m, 2H), 2.25 - 2.04 (m, 3H), 1.95 - 1.82 (m, 5H). 19F NMR (300 MHz, CD3OD): 5 - 76.934, -118.267, -133.032, -138.378, -173.838. LCMS: 654.2 (M+H+).
Example 31 & 32
4-((S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate (1: 1)
Figure imgf000230_0001
4-((R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol
Figure imgf000230_0002
Synthetic scheme:
Figure imgf000230_0003
Step 1: Synthesis of 4-((S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-niethoxyquinazolin-7-yl)-5-ethynyl- 6-fluoronaphthalen-2-ol formate (1: 1) and 4-((R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol
[00435] Compound 4-(4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro -lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate (60 mg) was purified by SFC (column: ChiralPak AD, 250><30mm ID., 10 pm, mobile phase: A for CO2 and B for Isopropanol (0.1% NH3-H2O), Gradient: B 40%, Flow rate: 80 mL /min, Column temperature: 38 °C) to afford 4-((S)-4- ((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol formate (1 : 1) (14.5 mg, 24.2%, Re-purified by Prep-HPLC (FA system)) and 4-((R)-4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol (13.8 mg, 24.6%) respectively, the two isomers (R or 5) was randomly assigned.
4-((S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol formate (1 : 1): Chiral purity: 100.0% ee; retention time: 0.463 min; Chiral SFC method: Waters UPC2 analytical SFC (SFC-H), column: ChiralPak AD, 50x4.6mm I D , 3 m, column temperature: 35 °C, A for CO2 and B for Isopropanol (0.05% DEA); pressure: 100 bar; flow rate: 3.0 mL/min. 1H NMR (400 MHz, CD3OD): S 8.50 (brs, 1H), 7.86 (dd, J= 8.8, 5.6 Hz, 1H), 7.41 - 7.30 (m, 2H), 7.12 (d, J= 2.4 Hz, 1H), 5.35 (d, J= 53.4 Hz, 1H), 4.56 - 4.35 (m, 3H), 4.17 - 4.08 (m, 1H), 4.05 - 3.96 (m, 2H), 3.89 (s, 3H), 3.78 - 3.69 (m, 1H), 3.62 - 3.46 (m, 4H), 3.41 - 3.38 (m, 1H), 3.25 - 3.15 (m, 1H), 2.48 - 1.90 (m, 10H). 19F NMR (400 MHz, CD3OD): 6 - 111.253, -132.587, -137.199, -173.949. LCMS: m/z 648.2 (M-FA+H+).
[00436] 4-((R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol: Chiral purity: 100.0% ee; retention time: 1.501 min; Chiral SFC method: Waters UPC2 analytical SFC (SFC-H), column: ChiralPak AD, 50x4.6mm I D , 3pm, column temperature: 35 °C, A for CO2 and B for Tsopropanol (0.05% DEA); pressure: 100 bar; flow rate: 3.0 mL/min. 'H NMR (300 MHz, CD3OD): 3 7.85 (dd, J= 9.0, 5.7 Hz, 1H), 7.38 - 7.29 (m, 2H), 7.12 (d, J= 2.4 Hz, 1H), 5.35 (d, J= 53.5 Hz, 1H), 4.54 - 4.38 (m, 1H), 4.37 - 4.22 (m, 2H), 4.11 - 4.00 (m, 1H), 3.85 (s, 3H), 3.69 - 3.55 (m, 3H), 3.49 - 3.35 (m, 2H), 3.31 - 3.19 (m, 3H), 3.09 - 3.00 (m, 1H), 2.39 - 1.79 (m, 10H). 19F NMR (300 MHz, CD3OD): 3 -111.399, -132.794, -138.848, -173.613. LCMS: m/z 648.2 (M+H+).
Example 33
4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-4-(2-
(hydroxymethyl)-7,8-dihydro-4H-pyrazolo[l,5-a][l,4]diazepin-5(6H)-yl)-5- methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol formate
Figure imgf000232_0001
Synthetic scheme:
Figure imgf000233_0001
Step 1: Synthesis of (5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2-yl)methanol
Figure imgf000233_0002
[00437] To a solution of tert-butyl 2-(hydroxymethyl)-7,8-dihydro-4H-pyrazolo[l,5- a][l,4]diazepine-5(6H)-carboxylate (650 mg, 2.43 mmol, 1.0 eq) in ACN (8.0 mL) was added HCI/Dioxane (0.5 mL). Then the mixture was stirred at room temperature for 1 h. The mixture was concentrated to afford (5,6,7,8-tetrahydro-4H-pyrazolo[l ,5-a][l,4]diazepin-2-yl)methanol (406 mg, crude) as a white solid. LCMS: 168.1 (M+H+).
Step 2: Synthesis of (5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-
4H-pyrazolo[l,5-a][l,4]diazepin-2-yl)methanol
Figure imgf000234_0001
[00438] To a solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (645 mg, 2.43 mmol, 1.0 eq) in DCM (4.0 mL) was added DIEA (1.57 g, 12.2 mmol, 5.0 eq) and a solution of (5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2-yl)methanol (406 mg, crude) in DCM (2.0 mL) at -20 °C under N2. The mixture was stirred at -20 °C for 2 h. The mixture was diluted with water (10 mL) and extracted with DCM (15 mL x 3). The combined organic phase was washed with brine (20 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel chromatography (DCM: MeOH = 80: 1) to give (5-(2-chloro-6,8-difluoro- 5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2-yl)methanol (640 mg, 66.5% for two steps) as a white solid. 1H NMR (400 MHz, CDCL): δ 7.37 (dd, J = 10.4, 9.2 Hz, 1H), 6.14 (s, 1H), 4.89 (s, 2H), 4.62 (s, 2H), 4.45 - 4.38 (m, 2H), 3.99 - 3.93 (m, 2H), 3.75 - 3.73 (m, 3H), 2.20 - 2.14 (m, 2H). LCMS: 395.8 (M+H+).
Step 3: Synthesis of 2-(((tert-butyldimethylsilyl)oxy)methyl)-5-(2-chloro-6,8-difluoro-5- methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine
Figure imgf000234_0002
[00439] To a solution of (5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2-yl)methanol (640 mg, 1.62 mmol, 1.0 eq) in DMF (5.0 mL) was added TBSC1 (487 mg, 3.23 mmol, 2.0 eq) and imidine (440 mg, 6.47 mmol, 4.0 eq). The mixture was stirred at room temperature for 15 h. The mixture was diluted with water (20 mL) and extracted with EtOAc (20 mL x 3). The combined organic phase was washed with water (10 mL x 2), brine (20 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by prep-TLC (Petroleum ether: EtOAc = 1 : 1) to give 2-(((tert- butyldimethylsilyl)oxy)methyl)-5-(2-chl oro-6, 8-difluoro-5-methoxyquinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (690 mg, 83.7%) as a white solid. 'H MR (300 MHz, CDCl3): 3 136 (dd, J= 10.7, 9.3 Hz, 1H), 6.13 (s, 1H), 4.89 (s, 2H), 4.64 (s, 2H), 4.42 - 4.36 (m, 2H), 3.97 - 3.91 (m, 2H), 3.74 - 3.71 (m, 3H), 2.21 - 2.12 (m, 2H), 0.89 (s, 9H), 0.05 (s, 6H). LCMS: 510.1 (M+H+).
Step 4: Synthesis of 2-(((tert-butyldimethylsilyl)oxy)methyl)-5-(6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine
Figure imgf000235_0001
[00440] To a solution of 2-(((tert-butyldimethylsilyl)oxy)methyl)-5-(2-chloro-6,8-difluoro-5- methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (600 mg, 1.18 mmol, 1.0 eq) in 1,4-Dioxane (5.0 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methanol (281 mg, 1.77 mmol, 1.5 eq), CS2CO3 (1.15 g, 3.54 mmol, 3.0 eq) and S- Phos Pd G4 (93.6 mg, 0.12 mmol, 0.1 eq). Then the reaction mixture was stirred at 100 °C for 12 h. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The combined organic phase was washed with brine (20 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue, which was purified by prep-TLC (DCM: MeOH = 10: 1) to give 2-(((tert-butyldimethylsilyl)oxy)methyl)-5-(6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (590 mg, 79.3%) as a white solid. 'II MR (300 MHz, CDCl3): 3 7.32 - 7.26 (m, 1H), 6.08 (s, 1H), 5.29 (d, J= 53.1, 1H), 4.83 (s, 2H), 4.63 (s, 2H), 4.39 - 4.34 (m, 2H), 4.28 - 4.10 (m, 2H), 3.89 - 3.82 (m, 2H), 3.64 (s, 3H), 3.36 - 2.93 (m, 4H), 2.24 - 1.87 (m, 8H), 0.89 (s, 9H), 0.05 (s, 6H). LCMS: 633.3 (M+H+).
Step 5: Synthesis of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-2-(((tert- butyldimethylsilyl)oxy)methyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine
Figure imgf000236_0001
[00441] To a solution of 2-(((tert-butyldimethylsilyl)oxy)methyl)-5-(6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (200 mg, 0.316 mmol, 1.0 eq) in THF (3.0 mL) was added LDA (2.0M in THF 0.6 mL, 1.26 mmol, 4.0 eq) dropwise at -78 °C. The reaction mixture was stirred at -78 °C for 1 h. Then l,2-dibromo-l,l,2,2-tetrafluoroethane (99 mg, 0.38 mmol, 1.2 eq) was added and stirred at -78 °C for 3 h. The mixture was diluted with water (15 mL) and extracted with EtOAc (15 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel chromatography (DCM: MeOH = 10: 1) to give 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-2-(((tert- butyldimethylsilyl)oxy)methyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (130 mg, 57.8%) as a yellow solid. 1H NMR (300 MHz, CDCL): 3 6.09 (s, 1H), 5.31 (d, J= 54.6, 1H), 4.82 (s, 2H), 4.63 (s, 2H), 4.41 - 4.09 (m, 4H), 3.91 - 3.82 (m, 2H), 3.67 (s, 3H), 3.50 - 2.92 (m, 4H), 2.33 - 1.90 (m, 8H), 0.89 (s, 9H), 0.05 (s, 6H). LCMS: 711.2, 713.2 (M+H+).
Step 6: Synthesis of 2-(((tert-butyldimethylsilyl)oxy)methyl)-5-(6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine
Figure imgf000237_0001
[00442] To a solution of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-2-(((tert- butyldimethylsilyl)oxy)methyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (90 mg, 0.126 mmol, 1.0 eq) and ((2-fluoro-6-(methoxymethoxy)-8-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (84 mg, 0.164 mmol, 1.3 eq) in Dioxane (2.0 mL) and H2O (0.4 mb) was added K3PO4 (80 mg, 0.378 mmol, 3.0 eq) and cataCXium A Pd G3 (28 mg, 0.04 mmol, 0.3 eq). The mixture was heated under microwave irradiation at 120 °C for 2 h. The reaction mixture was diluted with water (10 mL) and extracted with EtOAc (15 mL x 3). The organic phase was washed with brine (10 mL), dried over NaiSO4, filtered and concentrated under reduced pressure to give a residue, which was purified by prep- TLC (DCM: MeOH = 10: 1) to give 2-(((tert-butyldimethylsilyl)oxy)methyl)-5-(6,8-difluoro-7- (7-fluoro-3-(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (50 mg, 38.9%) as a yellow solid. 1H NMR (400 MHz, CDCl3): 3 7.79 (dd, J= 9.0, 5.6 Hz, 1H), 7.52 (d, J= 2.5 Hz, 1H), 7.30 (t, J= 8.6 Hz, 1H), 7.18 (d, J= 2.2 Hz, 1H), 6.19 (s, 1H), 5.36 - 5.22 (m, 3H), 4.91 - 4.66 (m, 4H), 4.46 - 4.35 (m, 2H), 4.33 - 4.00 (m, 2H), 3.96 - 3.76 (m, 2H), 3.72 - 3.67 (m, 3H), 3.52 (s, 3H), 3.39 - 2.87 (m, 4H), 2.30 - 1.90 (m, 8H), 0.90 - 0.83 (m, 27H), 0.70 - 0.62 (m, 3H), 0.09 - 0.06 (m, 6H). LCMS: 509.3 (M/2+H+).
Step 7: Synthesis of 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-4-(2-(hydroxymethyl)-7,8-dihydro-4H-pyrazolo[l,5-a][l,4]diazepin-5(6H)-yl)- 5-methoxyquinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000238_0001
[00443] To a solution of 2-(((tert-butyldimethylsilyl)oxy)methyl)-5-(6,8-difluoro-7-(7-fluoro-
3-(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (40 mg, 0.039 mmol, 1.0 eq) in DCM (2 mL) was added HC1 (4M in Dioxane) (0.6 mL). The mixture was stirred at room temperature for 2 h. The mixture was concentrated under reduced pressure to give 4-(6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-4-(2-(hydroxymethyl)-7,8-dihydro-4H- pyrazolo[l,5-a][l,4]diazepin-5(6H)-yl)-5-methoxyquinazolin-7-yl)-6-fluoro-5-
((triisopropylsilyl)ethynyl)naphthalen-2-ol (34 mg, crude) as a white solid. LCMS: 859.3 (M+H+).
Step 8: Synthesis of 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-4-(2-(hydroxymethyl)-7,8-dihydro-4H-pyrazolo[l,5-a][l,4]diazepin-5(6H)-yl)- 5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol formate
Figure imgf000238_0002
[00444] To a solution of 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-4-(2-(hydroxymethyl)-7,8-dihydro-4H-pyrazolo[l,5-a][l,4]diazepin-5(6H)- yl)-5-methoxyquinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (34 mg, 0.04 mmol, 1.0 eq) in DMF (2 mL) was added CsF (30 mg, 0.20 mmol, 5.0 eq). The mixture was stirred at room temperature for 4 h. The mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 40%) to give 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-4-(2-(hydroxymethyl)-7,8-dihydro-4H-pyrazolo[l ,5-a][l,4]diazepin-5(6H)-yl)-5- methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol formate (18 mg, 61.1% for two steps) as a white solid. 1H NMR (300 MHz, CD3OD): d 8.49 (s, 0.5H), 7.87 (dd, J= 9.3, 6.0 Hz, 1H), 7.37 - 7.29 (m, 2H), 7.14 (d, J= 2.4 Hz, 1H), 6.28 (d, J= 2.4 Hz, 1H), 5.43 (d, J= 52.5 Hz, 1H), 5.04 (s, 2H), 4.51 (s, 2H), 4.48 - 4.28 (m, 4H), 4.18 - 4.03 (m, 2H), 3.83 (s, 3H), 3.69 - 3.48 (m, 3H), 3.42 - 3.35 (m, 1H), 3.27 - 3.18 (s, 1H), 2.48 - 2.03 (m, 8H). 19F NMR (300 MHz, CD3OD): 3 -111.270, -132.777, -137.413, -173.796. LCMS: 703.2 (M +H+).
Example 34
4-(4-(((l-(dimethylamino)cyclobutyl)methyl)amino)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-
6-fluoronaphthalen-2-ol 2,2,2-trifluoroacetate formate
Figure imgf000239_0001
Synthetic scheme:
Figure imgf000240_0001
Step 1: Synthesis of l-(((4-methoxybenzyl)amino)methyl)-N,N-dimethylcyclobutan-l-amine
Figure imgf000240_0002
[00445] To a solution of compound 1 -(aminomethyl)-N,N-dimethylcyclobutan-l -amine (500 mg, 3.9 mmol, 1.0 eq) in MeOH (10 mL) was added compound 4-methoxybenzaldehyde (530 mg, 3.9 mmol, 1.0 eq). The reaction was stirred at room temperature for 15 h. To the reaction was added NaBT (295 mg, 7.8 mmol, 2.0 eq) at room temperature. The reaction was stirred at room temperature for 3 h. The mixture was quenched with aqueous ammonium chloride solution (0.5 mL) and dried with Na2SO4. The mixture was fdtered and t -dimethyl cy cl obutan-1 -amine (860 mg, crude) as a white solid. LCMS: 249.2 (M+Na+).
Step 2: Synthesis of 2-chloro-N-((l-(dimethylamino)cyclobutyl)methyl)-6,8-difluoro-5- methoxy-N-(4-methoxybenzyl)quinazolin-4-amine
Figure imgf000241_0001
[00446] To a solution of compound 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (600 mg, 2.27 mmol, 1.0 eq) and DIEA (881 mg, 6.82 mmol, 3.0 eq) in DCM (10 mL) was added compound l-(((4-methoxybenzyl)amino)methyl)-N,N-dimethylcy cl obutan-1 -amine (621 mg, 2.5 mmol, 1.1 eq) at -40 °C. The reaction mixture was stirred at room temperature for 3 h under nitrogen atmosphere. The mixture was quenched with water (30 mL) and extracted with DCM (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 100: 1) to give compound 2-chloro-N-((l- (dimethylamino)cyclobutyl)methyl)-6,8-difluoro-5-methoxy-N-(4-methoxybenzyl)quinazolin-4- amine (520 mg, 48.0%) as a yellow solid. LCMS: 477.2 (M+H+).
Step 3: Synthesis of N-((l-(dimethylamino)cyclobutyl)methyl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-N-(4- methoxybenzyl)quinazolin-4-amine
Figure imgf000242_0001
[00447] To a solution of compound 2-chloro-N-((l-(dimethylamino)cyclobutyl)methyl)-6,8- difluoro-5-methoxy-N-(4-methoxybenzyl)quinazolin-4-amine (460 mg, 0.97 mmol, 1.0 eq) in dioxane (10 mb) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)m ethanol (231 mg, 1.45 mmol, 1.5 eq), CS2CO3 (944 mg, 2.9 mmol, 3.0 eq) and SPhos Pd G4 (31 mg, 0.097 mmol, 0.1 eq) at room temperature. The reaction was stirred at 100 °C for 3 h. The mixture was partitioned between EtOAc (20 mb) and water (30 mb). The layers were separated. The aqueous layer was extracted with EtOAc (20 mL x 2). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 60: 1) to give compound N-((l-(dimethylamino)cyclobutyl)methyl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-N-(4- methoxybenzyl)quinazolin-4-amine (390 mg, 67.4%) as a yellow solid. 1H NMR (400 MHz, CDCl3): b 7.33 - 7.19 (m, 1H), 7.19 - 7.15 (m, 1H), 6.86 - 6.68 (m, 3H), 5.27 (d, J= 53.6 Hz, 1H), 4.88 - 4.65 (m, 2H), 4.35 - 4.18 (m, 2H), 3.97 (s, 3H), 3.76 (s, 3H), 3.41 - 3.15 (m, 3H), 3.05 - 2.94 (m, 1H), 2.68 - 2.36 (m, 6H), 2.28 - 2.11 (m, 3H), 2.07 - 1.78 (m, 7H), 1.31 - 1.42 (m, 2H), 0.93 - 0.78 (m, 2H). LCMS: 600 3 (M+H+).
Step 4: Synthesis of 7-bromo-N-((l-(dimethylamino)cyclobutyl)methyl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-N-(4- methoxybenzyl)quinazolin-4-amine
Figure imgf000242_0002
[00448] To a solution of compound N-((l-(dimethylamino)cyclobutyl)methyl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-N-(4- methoxybenzyl)quinazolin-4-amine (390 mg, 0.65 mmol, 1.0 eq) in THF (8 mL) was added nBuLi (2.5M, 0.5 mL, 1.3 mmol, 2.0 eq) dropwise at -65 °C. The reaction mixture was stirred at -65 °C for 0.5 h under nitrogen atmosphere. Compound l,2-dibromo-l,l,2,2-tetrafluoroethane (338 mg, 1.3 mmol, 2.0 eq) was added to the mixture. The reaction mixture was stirred at -65 °C for 0.5 h under nitrogen atmosphere. The reaction mixture was quenched with aqueous ammonium chloride solution (20 mL) and extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SOr and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 80: 1) to give compound 7-bromo-N-((l- (dimethylamino)cyclobutyl)methyl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxy-N-(4-methoxybenzyl)quinazolin-4-amine (210 mg, 47.7%) as a yellow solid. LCMS: 678.2, 680.2 (M+H+).
Step 5: Synthesis of N-((l-(dimethylamino)cyclobutyl)methyl)-6,8-difluoro-7-(7-fluoro-3-
(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-N-(4- methoxybenzyl)quinazolin-4-amine
Figure imgf000243_0001
[00449] To a solution of compound 7-bromo-N-((l-(dimethylamino)cyclobutyl)methyl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-N-(4- methoxybenzyl)quinazolin-4-amine (210 mg, 0.31 mmol, 1.0 eq) in toluene (4 mL) and FLO (0.8 mL) was added compound ((2-fluoro-6-(methoxymethoxy)-8-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (318 mg, 0.62 mmol, 2.0 eq), K3PO4 (197 mg, 0.93 mmol, 3.0 eq), rac-Bl-DlME (15 mg, 0.047 mmol, 0.15 eq) and Pdi(dba)3 (85 mg, 0.093 mmol, 0.3 eq). The mixture was heated under microwave irradiation at 120 °C for 1 h. The reaction mixture was poured into water (10 mL). The aqueous layer was extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 60: 1) to give compound N-((l- (dimethylamino)cyclobutyl)methyl)-6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxy-N-(4-methoxybenzyl)quinazolin-4-amine (132 mg, 43.3%) as a yellow solid. 1H NMR (300 MHz, CDCl3): δ 7.86 - 7.72 (m, 1H), 7.50 (d, J= 2.7 Hz, 1H), 7.38 - 7.28 (m, 1H), 7.18 (d, J= 2.4 Hz, 1H), 6.94 - 6.74 (m, 4H), 5.40 - 5.15 (m, 1H), 5.27 (s, 2H), 5.07 - 4.91 (m, 1H), 4.74 - 4.52 (m, 1H), 4.32 - 4.16 (m, 2H), 4.11 - 4.06 (m, 2H), 3.78 (s, 3H), 3.49 (s, 3H), 3.34 - 3.22 (m, 2H), 3.19 - 3.12 (m, 1H), 3.06 - 2.92 (m, 1H), 2.58-2.42 (m, 3H), 2.31 - 2.04 (m, 6H), 1.37 - 1.05 (m, 6H), 1.41 - 1.16 (m, 6H), 0.93 - 0.76 (m, 18H), 0.75 - 0.58 (m, 3H). LCMS: 984.4 (M+H+).
Step 6: Synthesis of 4-(4-(((l-(dimethylamino)cyclobutyl)methyl)amino)-6,8-difluoro-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7- yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000244_0001
[00450] To a solution of compound N-((l-(dimethylamino)cyclobutyl)methyl)-6,8-difluoro-7- (7-fluoro-3-(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-N-(4- methoxybenzyl)quinazolin-4-amine (90 mg, 0.09 mmol, 1.0 eq) in DCM (5 mL) was added HC1 in dioxane (5 mL). The reaction mixture was stirred at room temperature for 2 h. The reaction mixture was concentrated under reduced pressure to give compound 4-(4-(((l- (dimethylamino)cyclobutyl)methyl)amino)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((trii sopropylsilyl)ethynyl)naphthalen-2-ol (80 mg, crude) as a white solid. LCMS: 820.4 (M+H+).
Step 7: Synthesis of 4-(4-(((l-(dimethylamino)cyclobutyl)methyl)amino)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7- yl)-5-ethynyl-6-fluoronaphthalen-2-ol 2,2,2-trifluoroacetate (1 : 1)
Figure imgf000245_0001
[00451] To a solution of compound 4-(4-(((l-(dimethylamino)cyclobutyl)methyl)amino)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (80 mg, crude) in DMF (1 mL) was added CsF (148.3 mg, 1.0 mmol, 10.0 eq) at room temperature. The reaction was stirred at 40 °C for 1 h. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 50%) to give 4-(4-(((l- (dimethylamino)cyclobutyl)methyl)amino)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol 2,2,2-trifluoroacetate (1 : l)(20.5 mg, 33.8%, yield of two steps) as a white solid.
Figure imgf000245_0002
NMR (300 MHz, CD3OD): 3 7.87 (dd, J =9.0, 5.7 Hz, 1H), 7.39 - 7.27 (m, 2H), 7.14 - 7.10 (m, 1H), 5.45 (d, J = 52.8 Hz,lH), 4.65 - 4.43 (m, 2H), 4.15 - 4.08 (m, 3H), 4.04 - 3.87 (m, 2H), 3.82 - 3.56 (m, 3H), 3.52 - 3.45 (m, 1H), 3.37 - 3.32 (m, 1H), 2.61 - 2.51 (m, 1H), 2.50 - 2.44 (m, 6H), 2.44 - 2.32 (m, 3H), 2.31 - 2.12 (m, 3H), 2.11 - 1.98 (m, 1H), 1.97 - 1.80 (m, 4H). 19F NMR (300 MHz, CD3OD): 3 -76.905, -111.240, -133.75, -136.329, -174.218. LCMS: 664.3 (M +H+)
Example 35
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-5-methoxy-2-((l-
(morpholinomethyl)cyclopropyl)methoxy)quinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2- ol
Figure imgf000246_0001
Step 1: Synthesis of tert-butyl 3-(6,8-difluoro-5-methoxy-2-((l-
(morpholinomethyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000247_0001
[00452] To a solution of compound tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin- 4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (260 mg, 0.59 mmol, 1.0 eq) in 1,4-Dioxane (5.00 mL) was added (l-(morpholinomethyl)cyclopropyl)methanol (150 mg, 0.88 mmol, 1.5 eq), CS2CO3 (477 mg, 1.46 mmol, 2.5 eq) and Ruphos-Pd-G3 (49 mg, 0.06 mmol, 0.1 eq). The reaction mixture was stirred at 100 °C for 15 h under nitrogen atmosphere. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (15 mL), dried with NaiSO4, filtered and concentrated to give residue. The residue was purified by silica gel column chromatography (Petroleum ether: EtOAc = 3: 1) to give tert-butyl 3-(6,8-difluoro-5-methoxy-2-((l- (morpholinomethyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (170 mg, 50.1%) as a yellow solid. 1H NMR (300 MHz, CDCL): δ 7.26 - 7.20 (m, 1H), 4.37 - 4.04 (m, 6H), 3.79 (s, 3H), 3.68 - 3.60 (m, 4H), 3.40 (d, J= 12.6 Hz, 2H), 2.46 (s, 4H), 2.40 (s, 2H), 1.90 - 1.73 (m, 4H), 1.49 (s, 9H), 0.71 - 0.39 (m, 4H). LCMS: 576.3 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-5-methoxy-2-((l- (morpholinomethyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000247_0002
[00453] To a solution of tert-butyl 3-(6,8-difluoro-5-methoxy-2-((l- (morpholinomethyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (170 mg, 0.30 mmol, 1.0 eq) in THF (3.00 mL) was added u-BuLi 2.5M in THF (0.42 mL, 1.03 mmol, 3.5 eq) dropwise at -65 °C. The reaction mixture was stirred at -65 °C for 1 h. Then a solution of l,2-dibromo-l,l,2,2-tetrafluoroethane (153 mg, 0.59 mmol, 2.0 eq) was added dropwise at -65 °C. The reaction mixture was stirred at -65 °C for 2 h. The residue was quenched with aqueous NH4CI (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (10 mL), dried with Na2SO4, fdtered and concentrated to give a residue. The residue was purified by prep-TLC (Petroleum ether: EtOAc = 3: 1) to give tert-butyl
3-(7-bromo-6,8-difluoro-5-methoxy-2-((l-(morpholinomethyl)cyclopropyl)methoxy)quinazolin-
4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (150 mg, 77.6%) as a yellow solid. LCMS: 654.2, 656.2 (M+H+).
Step 3: Synthesis of tert-butyl (lR,5S)-3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxy-2-((l- (morpholinomethyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000248_0001
[00454] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-5-methoxy-2-((l- (morpholinomethyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (280 mg, 0.43 mmol, 1.0 eq) in Toluene (5 mL) and H2O (1 mL) was added ((2- fluoro-6-(methoxymethoxy)-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l- yl)ethynyl)triisopropylsilane (439 mg, 0.86 mmol, 2.0 eq), K3PO4 O82 mg, 0.86 mmol, 2.0 eq), Tris(dibenzylideneacetone)dipalladium (117 mg, 0.13 mmol, 0.3 eq) and 3-(/er/-butyl)-4- (2,6- dimethoxyphenyl) -2,3 -dihydrobenzo [d][l,3]oxaphosphole (22 mg, 0.06 mmol, 0.15 eq). The reaction mixture was heated at MW 120 °C for 2 h. The mixture was diluted with water (15 mL) and extracted with EtOAc (15 mL x 3). The organic phase was washed with brine (10 mL), dried with Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (Petroleum ether: EtOAc = 3: 1) to give tert-butyl (lR,5S)-3-(6,8- difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5- methoxy-2-((l-(morpholinomethyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (160 mg, 39.0%) as a yellow solid. 1H NMR (300 MHz, CDCl3): J 7.78 (dd, J= 9.0, 5.7 Hz, 1H), 7.51 (d, J= 2.4 Hz, 1H), 7.33 - 7.27 (m, 1H), 7.22 - 7.18 (m, 1H), 5.29 (s, 2H), 4.47 - 4.19 (m, 6H), 3.95 (d, J= 2.7 Hz, 3H), 3.70 - 3.66 (m, 3H), 3.52 (s, 4H), 2.48 (s, 4H), 2.44 - 2.41 (m, 2H), 2.15 - 1.74 (m, 5H), 1.50 (s, 9H), 1.29 - 1.21 (m, 4H), 0.90 - 0.82 (m, 18H), 0.71 - 0.65 (m, 4H). LCMS: 960.4 (M+H+).
Step 4: Synthesis of 4-(4-((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-5- methoxy-2-((l-(morpholinomethyl)cyclopropyl)methoxy)quinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000249_0001
[00455] To a solution of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen- 1 -yl)-5 -methoxy -2-(( 1 -(morpholinomethyl) cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.10 mmol, 1.0 eq) in DCM (2.00 mL) was added HCl/dioxane (4 N, 2 mL) dropwise at 0 °C. Then the reaction mixture was stirred at room temperature for 1 h. The reaction mixture was concentrated under reduced pressure to give 4-(4-((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)- 6,8-difluoro-5-methoxy-2-((l-(morpholinomethyl)cyclopropyl)methoxy)quinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (85 mg, crude) as a yellow solid. LCMS: 816.4 (M+H+).
Step 5: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-5-methoxy-2-((l- (morpholinomethyl)cyclopropyl)methoxy)quinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2- ol
Figure imgf000250_0001
[00456] To a solution of 4-(4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-6,8-difluoro-5-methoxy-2-
((l-(morpholinomethyl)cyclopropyl)methoxy)quinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl) ethynyl)naphthalen-2-ol (85 mg, 0.10 mmol, 1.0 eq) in DMF (3 mL) was added CsF (474 mg, 3.12 mmol, 30.0 eq). Then the reaction mixture was stirred at 40 °C for 15 h. The mixture was diluted with water (7 mL) and extracted with EtOAc (7 mL x 3). The organic phase was washed with water (10 mL x 3) and brine (10 mL), dried with Na2SO4, filtered and concentrated to give a residue. The residue was purified by prep-HPLC (0.1% FA in H2O/ACN) to give 4-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-5-methoxy-2-((l- (morpholinomethyl)cyclopropyl)methoxy)quinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol (22 mg, 33.0% for 2 steps) as a white solid. 1H NMR (300 MHz, CD3OD): d 8.46 (s, 1H), 7.87 (dd, J= 9.0, 5.7 Hz, 1H), 7.39 - 7.26 (m, 2H), 7.16 - 7.08 (m, 1H), 4.53 - 4.36 (m, 3H), 4.21 - 4.07 (m, 3H), 3.91 (s, 3H), 3.70 (s, 5H), 3.59 - 3.47 (m, 1H), 3.40 (s, 1H), 2.76 - 2.50 (m, 6H), 2.36 - 2.04 (m, 4H), 0.79 - 0.51 (m, 4H). 19F NMR (300 MHz, CD3OD): δ -111.278, -131.757, - 137.308. LCMS: 660.2 (M+H+).
Example 36 l-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l,4- diazepan-5-one trifluoroacetate
Figure imgf000250_0002
Synthetic scheme:
Figure imgf000251_0001
Step 1: Synthesis of l-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-l,4-diazepan-5-one
Figure imgf000251_0002
[00457] To a solution of compound 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (500 mg,
1.9 mmol, 1.0 eq) and DIEA (733 mg, 5.68 mmol, 3.0 eq) in DCM (10 mL) was added compound l ,4-diazepan-5-one hydrochloride (313 mg, 2 08 mmol, 1.1 eq) at -40 °C The reaction mixture was stirred at room temperature for 2 h under nitrogen atmosphere. The mixture was quenched with water (30 mL) and extracted with DCM (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 100: 1) to give compound l-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-l,4-diazepan-5- one (500 mg, 77.2%) as a yellow solid. 1H NMR (400 MHz, CDCl3): 37.38 (t, J= 10.0 Hz, 1H), 6.25 (s, 1H), 3.88 (s, 3H), 3.86 - 3.77 (m, 4H), 3.54 - 3.42 (m, 2H), 2.87 - 2.78 (m, 2H). LCMS: 343.0 (M+H+).
Step 2: Synthesis of tert-butyl 4-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-7-oxo-
1 ,4-diazepane- 1-carboxylate
Figure imgf000252_0001
[00458] To a solution of compound l-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-l,4- diazepan-5-one (500 mg, 1.46 mmol, 1.0 eq) in THF (10 mL) was added BOC2O (383 mg, 1.75 mmol, 1.2 eq), TEA (444 mg, 4.39 mmol, 3.0 eq) and DMAP (18 mg, 0.15 mmol, 0.1 eq). The reaction mixture was stirred at room temperature for 3 h under nitrogen atmosphere. The mixture was quenched with water (30 mL) and extracted with DCM (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 100: 1) to give compound tert-butyl 4-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-7-oxo- 1 ,4-diazepane- 1-carboxylate (500 mg, 77.4%) as a yellow solid. 1H NMR (300 MHz, CDCl3): 8 7.38 (dd, J = 11.1, 9.3 Hz, 1H), 4.09 - 4.00 (m, 2H), 3.89 (s, 3H), 3.86 - 3.75 (m, 4H), 3.08 - 2.96 (m, 2H), 1.52 (s, 9H). LCMS: 442.8 (M+H+).
Step 3: Synthesis of tert-butyl 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-7-oxo-l,4-diazepane-l- carboxylate
Figure imgf000253_0001
[00459] To a solution of compound tert-butyl 4-(2-chloro-6,8-difluoro-5-methoxyquinazolin- 4-yl)-7-oxo-l,4-diazepane-l -carboxylate (400 mg, 0.9 mmol, 1.0 eq) in dioxane (8 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (216 mg, 1.36 mmol, 1.5 eq), CS2CO3 (884 mg, 2.7 mmol, 3.0 eq) and SPhos Pd G4 (72 mg, 0.09 mmol, 0.1 eq) at room temperature. The reaction was stirred at 100 °C for 2 h. The mixture was partitioned between
EtOAc (20 mL) and water (30 mL). The layers were separated. The aqueous layer was extracted with EtOAc (20 mL x 2). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 60: 1) to give compound tert-butyl 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazolin-4-yl)-7-oxo-l,4-diazepane-l-carboxylate (240 mg, 46.9%) as a yellow solid. LCMS: 566.3 (M+H+).
Step 4: Synthesis of l-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-l,4-diazepan-5-one
Figure imgf000253_0002
[00460] To a solution of compound tert-butyl 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-7-oxo-l,4-diazepane-l- carboxylate (300 mg, 0.53 mmol, 1.0 eq) in DCM (3 mL) was added TFA (3 mL). The reaction mixture was stirred at room temperature for 1 h. The reaction mixture was evaporated to dryness. The residue was quenched with sodium bicarbonate aqueous solution (30 mL) and extracted with ethyl acetate (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 80: 1) to give compound 1 -(6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-4-yl)-l,4-diazepan-5-one (240 mg, 97.2%) as a yellow solid. LCMS: 466.2 (M+H+).
Step 5: Synthesis of l-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l,4-diazepan-5-one
Figure imgf000254_0001
[00461] To a solution of compound l-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l,4-diazepan-5-one (140 mg, 0.3 mmol, 1.0 eq) in THF (3 mL) was added LDA (2.0 M, 0.3 mL, 0.6 mmol, 2.0 eq) dropwise at - 65 °C. The reaction mixture was stirred at -65 °C for 0.5 h under nitrogen atmosphere.
Compound l,2-dibromo-l,l,2,2-tetrafluoroethane (155 mg, 0.6 mmol, 2.0 eq) was added to the mixture. The reaction mixture was stirred at -65 °C for 0.5 h under nitrogen atmosphere. The reaction mixture was quenched with ammonium chloride aqueous solution (30 mL) and extracted with ethyl acetate (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Di chloromethane: Methanol = 80: 1) to give compound l-(7- bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-4-yl)-l,4-diazepan-5-one (70 mg, 42.8%) as a yellow solid. LCMS: 544.0, 546.1 (M+H+).
Step 6: Synthesis of l-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-l,4-diazepan-5-one
Figure imgf000255_0001
[00462] To a solution of compound l-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l,4-diazepan-5-one (70 mg, 0.13 mmol, 1.0 eq) in PhMe (2 mL) and H2O (0.4 mL) was added compound ((2-fluoro-6- (methoxymethoxy)-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l-yl)ethynyl) triisopropylsilane (132 mg, 0.26 mmol, 2.0 eq), K3PO4 (82 mg, 0.39 mmol, 3.0 eq), rac-BI- DIME (6 mg, 0.019 mmol, 0.15 eq) and Pd2(dba)3 (35 mg, 0.039 mmol, 0.3 eq). The reaction mixture was heated under microwave irradiation at 120 °C for 1 h under nitrogen atmosphere The reaction mixture was poured into water (10 mL). The aqueous layer was extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 60: 1) to give compound 1 -(6,8- difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- l,4-diazepan-5-one (35 mg, 32.0%) as a yellow solid. LCMS: 850.3 (M+H+).
Step 7: Synthesis of l-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-l,4-diazepan-5-one
Figure imgf000255_0002
[00463] To a solution of compound l -(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l,4-diazepan-5-one (85 mg, 0.1 mmol, 1.0 eq) in DCM (1 mL) was added TFA(1 mL). The reaction mixture was stirred at room temperature for 2 h. The reaction mixture was concentrated under reduced pressure to give a crude compound l-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- l,4-diazepan-5-one (60 mg, crude) as a yellow solid. LCMS: 806.3 (M+H+).
Step 8: Synthesis of l-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-l,4-diazepan-5-one trifluoroacetate (1:0.5)
Figure imgf000256_0001
[00464] To a solution of compound l-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l ,4-diazepan-5-one (60 mg, crude) in DMF (1 mL) was added CsF (113 mg, 0.75 mmol, 10.0 eq) at room temperature. The reaction was stirred at 40 °C for 1 h. The mixture was concentrated to give a crude. The crude was purified by Prep- HPLC (acetonitrile with 0.1% FA in water, 10% to 60%) to give l-(7-(8-ethynyl-7-fluoro-3- hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-l,4-diazepan-5-one 2,2,2-trifluoroacetate (1 :0.5) (31.5 mg, 41.2% for two steps) as a white solid. 1H NMR (400 MHz, CD3OD): 3 7.87 (dd, J= 8.8, 5.6 Hz, 1H), 7.41 - 7.27 (m, 2H), 7.21 - 7.05 (m, 1H), 6.32 - 6.17 (m, 2H), 5.74 - 5.65 (m, 1H), 5.48 (d, J= 52.8, 1H), 4.66 - 4.43 (m, 2H), 4.10 (s, 3H), 3.93 - 3.55 (m, 7H), 3.52 (s, 1H), 3.37 - 3.31 (m, 2H), 2.65 - 2.45 (m, 2H), 2.40 - 2.31 (m, 1H), 2.30 - 2.17 (m, 2H), 2.13 - 1.98 (m, 1H). 19F NMR (400 MHz, CD3OD): 3 -76.920, -111.255, -134.138, -136.595, -174.168. LCMS: 650.2 (M+H+). Example 37
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-chloro-6-methyl-lH-indazole-
3-carbonitrile formate
Figure imgf000257_0001
Synthetic scheme:
Figure imgf000257_0002
Step 1: Synthesis of tert-butyl 3-(7-(5-chloro-6-methyl-lH-indazol-4-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000258_0001
[00465] To a solution of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(5-chloro-6-methyl-lH- indazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline (700 mg, 1.1 mmol, 1.0 eq) in THF (7.0 mL) was added BOC2O (240 mg, 1.1 mmol, 1.0 eq), NaHCO3 (277 mg, 3.3 mmol, 3.0 eq) and H2O (7.0 mL) at room temperature under nitrogen atmosphere. The reaction mixture was stirred at room temperature for 1 h. The mixture was diluted with water (20 mL) and extracted with DCM (20 mL x 3). The organic phase was washed with brine (20 mL), dried with Na2SOr, filtered and concentrated to give a crude. The crude was purified by silica gel column chromatography (DCM : MeOH = 40 : 1) to give tert-butyl (lR,5S)-3-(7-(5-chloro-6-methyl-lH-indazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (350 mg, 43.1%) as a yellow solid. LCMS: 728.2 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-(5-chloro-3-iodo-6-methyl-lH-indazol-4-yl)-6,8-difluoro- 2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin- 4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Boc Boc
Figure imgf000258_0002
[00466] To a solution of tert-butyl 3-(7-(5-chloro-6-methyl-1H-indazol-4-yl)-6,8-difluoro-2- (((2R, 7aS)-2-flu orotetrahy dro- 1 H-pyrrolizin-7a(5H)-yl)methoxy)-5 -methoxy quinazolin-4 -yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (350 mg, 0,48 mmol, 1.0 eq) in DMF (5.0 ml..) was added KOH (81 mg 1.44 mmol, 3.0 eq) and H (488 mg, 1.92 mmol, 4.0 eq) under nitrogen atmosphere. Then the reaction mixture was stirred at room temperature for 15 h. The mixture was diluted with water (10 mb) and extracted with DCM (10 mL x 3). The organic phase was washed with water (10 mL x 3) and brine (10 mL), dried with Na2SO4, filtered and concentrated to give a crude. The crude was purified by silica gel column chromatography (DCM : MeOH = 30 : 1) to give tert-butyl 3-(7-(5-chloro-3-iodo-6-methyl-lH-indazol-4-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (140 mg, 34.1%) as a yellow solid. LCMS: 853.5 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-(5-chloro-3-cyano-6-methyl-lH-indazol-4-yl)-6-fluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-8- methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000259_0001
[00467] T 'o a solution of tert-butyl 3-(7-(5-chloro-3-iodo-6-metliyl-lH-indazol-4-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (140 mg, 0.16 mmol, 1.0 eq) in DMAc (4.0 mL) was added Zn(CN)2 (67 mg, 0.57 mmol, 3.0 eq) and Pd(PPh3)4 (66 mg, 0.06 mmol, 0.3 eq) at room temperature. The reaction mixture was heated under microwave irradiation at 160 °C for 30 min. The mixture was diluted with water (10 mL) and extracted with DCM (10 mL x 3). The organic phase was washed with water (10 mL x 3) and brine (10 mL), dried with Na2SO4, filtered and concentrated to give a crude. The crude was purified by silica gel column chromatography (DCM : MeOH = 20 : 1) to give tert-butyl 3-(7-(5-chloro-3-cyano-6- methyl-lH-indazol-4-yl)-6-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxy-8-methylquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (24 mg, 19.4%) as a yellow solid. LCMS: 753.3 (M+H+).
Step 4: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-chloro-6- methyl-lH-indazole-3-carbonitrile formate (1:1)
B
Figure imgf000260_0001
[00468] To a solution of tert-butyl 3-(7-(5-chloro-3-cyano-6-methyl-lH-indazol-4-yl)-6- fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-8-methyl quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (24 mg, 0.03 mmol, 1.0 eq) in DCM (1.0 mL) was added HC1 in dioxane (0.5 mL) at room temperature. The reaction mixture was stirred at room temperature for 1 h. The reaction mixture was concentrated under reduced pressure to give a crude. The mixture was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 60%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-chloro-6- methyl-lH-indazole-3-carbonitrile formate (1 : 1) (4.1 mg, 19.7%) as white solid. 1H NMR (400 MHz, CD3OD): 8 8.52 (s, 1H), 7.84 (s, 1H), 5.41 (d, .7= 52.4, 1H), 4.53 - 4.27 (m, 4H), 3.99 - 3.95 (m, 2H), 3.95 - 3.91 (m, 3H), 3.69 - 3.46 (m 5H), 3.25 - 3.12 (m, 1H), 2.64 (s, 3H), 2.55 - 2.23 (m, 3H), 2.18 - 2.09 (m, 2H), 2.06 - 1.91 (m, 5H). 19F NMR (400 MHz, CD3OD): d - 131.3039, -138.409, -173.856. LCMS: 653.2 (M+H+).
Example 38
2-((7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyqiiinazolin-4- yl)amino)acetamide 2,2,2-trifluoroacetate
Figure imgf000261_0001
Synthetic scheme:
Figure imgf000262_0001
Step 1: Synthesis of methyl (4-methoxybenzyl)glycinate
Figure imgf000262_0002
[00469] To a solution of compound methyl glycinate hydrochloride (1 0 g, 8.0 mmol, 1 .0 eq) in MeOH (20 mL) was added compound 4-methoxybenzaldehyde (1.1 g, 8.0 mmol, 1.0 eq) and TEA (1.6 g, 16.0 mmol, 2.0 eq). The reaction was stirred at room temperature for 15 h. NaBFL (605 mg, 16.0 mmol, 2.0 eq) was added to the mixture. The reaction was stirred at room temperature for 2 h. The mixture was quenched with ammonium chloride aqueous solution (0.5 mL) and dried with Na2SO4. The mixture was filtered and the filtrate was concentrated to give crude compound methyl (4-methoxybenzyl)glycinate (2.2 g, crude) as a white solid. LCMS: 210.1 (M+H+).
Step 2: methyl N-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl) glycinate
Figure imgf000263_0001
[00470] To a solution of compound 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (500 mg, 1.9 mmol, 1.0 eq) and DIEA (733 mg, 5.68 mmol, 3.0 eq) in DCM (10 mL) was added compound methyl (4-methoxybenzyl)glycinate (436 mg, 2.08 mmol, 1.1 eq) at -40 °C. The reaction mixture was stirred at room temperature for 2 h under nitrogen atmosphere. The mixture was quenched with water (30 mL) and extracted with DCM (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 100: 1) to give compound methyl N-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N-(4- methoxybenzyl)glycinate (400 mg, 48.3%) as a yellow solid. 1H NMR (400 MHz, CDCl3): δ 7.39 - 7.31 (m, 1H), 7.25 - 7.19 (m, 2H), 6.86 (d, J= 8.4 Hz, 2H), 4.87 (s, 2H), 4.11 (s, 2H), 3.81 (s, 3H), 3.80 (s, 3H), 3.78 (s, 3H). LCMS: 438.1 (M+H+).
Step 3: Synthesis of methyl N-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycinate
Figure imgf000264_0001
[00471] To a solution of compound methyl N-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4- yl)-N-(4-methoxybenzyl)glycinate (400 mg, 0.92 mmol, 1.0 eq) in dioxane (8 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (218 mg, 1.37 mmol, 1.5 eq), CS2CO3 (894 mg, 2.7 mmol, 3.0 eq) and RuPhos Pd G3 (77 mg, 0.092 mmol, 0.1 eq) at room temperature. The reaction was stirred at 100 °C for 3 h. The mixture was partitioned between EtOAc (20 mL) and water (30 mL). The layers were separated. The aqueous layer was extracted with EtOAc (20 mL x 2). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 60: 1) to give compound methyl N- (6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycinate (320 mg, 62.4%) as a yellow solid. LCMS: 561.2 (M+H+).
Step 4: Synthesis of methyl N-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycinate
Figure imgf000264_0002
[00472] To a solution of compound methyl N-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycinate (300 mg, 0.54 mmol, 1.0 eq) in THF (5 mL) was added LDA (2.0 M, 0.55 mL, 1.07 mmol, 2.0 eq) dropwise at -78 °C. The reaction mixture was stirred at -78 °C for 0.5 h under nitrogen atmosphere. Compound l,2-dibromo-l,l,2,2-tetrafluoroethane (276 mg, 1.07 mmol, 2.0 eq) was added to the mixture. The reaction mixture was stirred at -78 °C for 0.5 h under nitrogen atmosphere. The reaction mixture was quenched with ammonium chloride aqueous solution (30 mL) and extracted with ethyl acetate (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 80: 1) to give compound methyl N-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycinate (184 mg, 53.8%) as a yellow solid. 1H NMR (300 MHz, CDCl3): 3 7.20 - 7.11 (m, 2H), 6.83 (d, J = 8.7, 2H), 5.23 (d, J= 52.2, 1H), 4.81 (s, 2H), 4.25 - 4.12 (m, 1H), 4.08 (s, 2H), 3.83 (s, 3H), 3.79 (s, 3H), 3.74 (s, 3H), 3.37 - 3.05 (m, 3H), 3.05 - 2.82 (m, 1H), 2.31 - 2.19 (m, 1H), 2.19 - 2.03 (m, 2H), 2.02 - 1.78 (m, 3H). LCMS: 639.1, 641.1 (M+H+).
Step 5: Synthesis of N-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycinate
Figure imgf000265_0001
[00473] To a solution of compound methyl N-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4- methoxybenzyl)glycinate (150 mg, 0.24 mmol, 1.0 eq) in PhMe (4 mL) and H2O (0.8 mL) was added compound ((2-fluoro-6-(methoxymethoxy)-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)naphthalen-l-yl)ethynyl)triisopropylsilane (241 mg, 0.47 mmol, 2.0 eq), K3PO4 (150 mg, 0.71 mmol, 3.0 eq), rac-BI-DIME (12 mg, 0.035 mmol, 0.15 eq) and Pd2(dba)3 (65 mg, 0.071 mmol, 0.3 eq). The reaction mixture was heated under microwave irradiation at 120 °C for 1 h under nitrogen atmosphere. The reaction mixture was poured into water (10 mL). The aqueous layer was extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SOr and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 60: 1) to give compound N-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycinate (130 mg, 58.6%) as a yellow solid. LCMS: 945.3 (M+H+).
Step 6: Synthesis of compound sodium N-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycinate
Figure imgf000266_0001
[00474] To a solution of compound N-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycinate (100 mg, 0.11 mmol, 1.0 eq) in THF (1.0 mb) was added MeOH (1.0 mL), H2O (1.0 mb) and NaOH (6 mg, 0.16 mmol, 1.5 eq). The reaction mixture was stirred at room temperature for 2 h. The mixture was quenched with water (20 mL) and extracted with EtOAc (10 mL x 2). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over ISfeSCL and evaporated to dryness. The crude product was purified by Prep-TLC (DCM: MeOH = 8: 1) to give compound N-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l -yl)- 2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- N-(4-methoxybenzyl)glycine (100 mg, 99.2%) as a white solid. LCMS: 931.3 (M+H+).
Step 7: Synthesis of compound 2-((6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)(4-methoxybenzyl)amino)acetamide
Figure imgf000267_0001
[00475] To a solution of compound N-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-(4-methoxybenzyl)glycine (100 mg, 0.11 mmol, 1.0 eq) in DMF (2 mL) was added compound ammonium lH-benzo[d][l,2,3]triazol-l- olate (48 mg, 0.32 mmol, 3.0 eq) and EDCT (60 mg, 0.32 mmol, 3.0 eq). Then the reaction mixture was stirred at room temperature for 4 h. The mixture was added with water (20 mL) and extracted with EtOAc (20 mL x 2). The combined organic phases were washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by Prep-
TLC (DCM: MeOH = 10: 1) to give compound 2-((6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)(4- methoxybenzyl)amino)acetamide (50 mg, 51.2%) as a yellow solid. LCMS: 930.3 (M+H+).
Step 8: Synthesis of 2-((6,8-difluoro-7-(7-fluoro-3-hydroxy-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)amino)acetamide
Figure imgf000267_0002
[00476] To a solution of compound 2-((6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5EI)-yl)methoxy)-5-methoxyquinazolin-4-yl)(4-methoxybenzyl)amino)acetamide (50 mg, 0.054 mmol, 1.0 eq) in DCM (1 mL) was added TFA(1 mL). The reaction mixture was stirred at room temperature for 1 h. The reaction mixture was concentrated under reduced pressure to give a crude compound 2-((6,8-difluoro-7-(7-fluoro-3-hydroxy-8-((triisopropylsilyl)ethynyl) naphthal en-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)amino)acetamide (39 mg, crude) as a yellow solid. LCMS: 766.3 (M+H+).
Step 9: Synthesis of 2-((7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)amino)acetamide 2,2,2-trifluoroacetate (1:0.7)
Figure imgf000268_0001
[00477] To a solution of compound 2-((6,8-difluoro-7-(7-fluoro-3-hydroxy-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)amino)acetamide (60 mg, crude) in DMF (1 mL) was added CsF (88 mg, 0.54 mmol, 10.0 eq) at room temperature. The reaction was stirred at 40 °C for 1 h. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 50%) to give 2-((7-(8-ethynyl-7-fluoro-3- hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)amino)acetamide 2,2,2-trifluoroacetate (1 :0.7) (9.1 mg, 23.4% for two steps) as a white solid. 1H NMR (300 MHz, CD3OD): d 7.87 (dd, J= 9.0, 5.7 Hz, 1H), 7.41 - 7.27 (m, 2H), 7.14 (d, J= 2.4 Hz, 1H), 5.51 (d, ./= 52.8, 1H), 4.67 - 4.56 (m, 2H), 4.41 - 4.25 (m, 2H), 4.18 (d, 2.1 Hz, 3H), 3.90 - 3.74 (m, 3H), 3.56 - 3.48 (m, 1H), 3.47 -
3.35 (m, 1H), 2.65 - 2.56 (m, 1H), 2.55 - 2.48 (m, 1H), 2.42 - 2.22 (m, 3H), 2.16 - 1.99 (m, 1H). 19F NMR (300 MHz, CD3OD): d -76.920, -111.237, -134.379, -136.044, -174.360. LCMS: 610.3 (M+H+).
Example 39 4-(3,8-diazabicyclo [3.2.1 ] octan-3-yl)-7-(3-(difluoromethyl)-8-ethynyl-7-fluoronaphthalen-l - yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline formate (1:0.2)
Figure imgf000269_0001
Synthetic scheme:
Figure imgf000269_0002
Step 1: Synthesis of tert-butyl 3-(7-(3-(difluoromethyl)-7-fluoro-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000270_0001
[00478] To a solution of 3-(difluoromethyl)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen- 1-yl trifluoromethanesulfonate (140 mg, 0.25 mmol, 1.0 eq) in THF (2 mL) was added (TMP)2Zn-MgC12·LiCl (2.0 mL, 1.1 mmol, 4.4 eq) dropwise. The reaction mixture was stirred at 50 °C for 2 h. To the mixture was added a solution of tert-butyl (lR,5S)-3-(6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (104 mg, 0.19 mmol, 0.8 eq) and CPhos Pd G3 (21 mg, 0.02 mmol, 0.10 eq) in dioxane (2 mL). The reaction mixture was stirred at 80 °C for 12 h. The mixture was filtered and the filtrate was concentrated to give a residue. The residue was purified by silica gel column chromatography (DCM : MeOH = 40 : 1) to give tert-butyl (lR,5S)-3-(7-(3-(difluoromethyl)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (140 mg, 55.9%) as a yellow solid. LCMS: 938.1 (M+H+).
Step 2: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethyl)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline
Figure imgf000270_0002
[00479] To a solution of tert-butyl 3-(7-(3-(difluoromethyl)-7-fluoro-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1 ]octane-8- carboxylate (100 mg, 0.11 mmol, 1.0 eq) in DCM (2 mL) was added HCl/Dioxane (0.6 mL, 2.4 mmol, 20.0 eq) at 0 °C. The reaction mixture was stirred at 0 °C for 1.5 h under N2. The mixture was concentrated to give 4-((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethyl)-7- fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (120 mg, crude) as a yellow solid. LCMS: 838.0 (M+H+).
Step 3: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethyl)-8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazoline formate (1:0.2)
Figure imgf000271_0001
[00480] To a solution of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethyl)-7-fluoro- 8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (120 mg, 0.14 mmol, 1.0 eq) in DMF (1.5 mL) was added CsF (425.3 mg, 2.8 mmol, 20.0 eq). The mixture was stirred at 50 °C for 3 h. The mixture was filtered off and the filtrate was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 15% to 50%) to give 4-((lR,5S)-3,8- diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethyl)-8-ethynyl-7-fluoronaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline formate (1:0.2) (17 mg, 22.1%, two steps yield) as a white solid. 1H NMR (400 MHz, CD3OD): d 8.33 (brs, 0.2H), 8.25 - 8.21 (m, 1H), 7.70 (s, 1H), 7.55 (t, J= 8.8 Hz, 1H), 7.01 (t, J= 55.6 Hz, 1H), 5.33 (d, J= 53.6 Hz, 1H), 4.91 - 4.89 (m, 2H), 4.47 (s, 1H), 4.35 - 4.22 (m, 2H), 4.04 (s, 1H), 3.87 (s, 3H), 3.78 - 3.71 (m, 2H), 3.67 - 3.61 (m, 1H), 3.55 - 3.51 (m, 1H), 3.44 - 3.37 (m, 2H), 3.07 - 3.03 (m, 1H), 2.47 - 2.14 (m, 3H), 2.05 - 1.99 (m, 3H), 1.88 - 1.79 (m, 4H). 19F NMR (400 MHz, CD3OD): d -104.058, -112.561, -132.624, -138.539, - 173.763. LCMS: 682.2 (M+H+). Example 40
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l- (hydroxymethyl)cyclopropyl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate
Figure imgf000272_0001
Synthetic scheme:
Figure imgf000272_0002
Step 1: Synthesis of tert-butyl 3-(6,8-difluoro-2-((l-(hydroxymethyl)cyclopropyl)methoxy)-
5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate Boc Boc
Figure imgf000273_0001
[00481] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (1.7 g, 3.9 mmol, 1.0 eq) in DMF (15 mL) and THF (15 mL) was added cyclopropane-l,l-diyldimethanol (394 mg, 3.9 mmol, 1.0 eq) and CS2CO3 (3.8 g, 11.6 mmol, 3.0 eq) at room temperature. The reaction mixture was stirred at 40 °C for 3 h under N2. The mixture was diluted with H2O (30 mL) and extracted with EtOAc (30 mL x 3). The combined organic layers were washed with H2O (15 mL x 3), brine (15 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM/MeOH=15:l) to give tert-butyl 3-(6,8-difluoro-2-((l-(hydroxymethyl) cyclopropyl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.9 g, 97.4%) as a white solid. 1H NMR (300 MHz, CDCl3), δ 7.29 (t, J= 9.9 Hz, 1H), 4.43 (s, 2H), 4.40 - 4.01 (m, 4H), 3.82 (s, 3H), 3.53 - 3.33 (m, 4H), 1.98 - 1.62 (m, 4H), 1.49 (s, 9H), 0.73 - 0.53 (m, 4H). LCMS: 507.2 (M+H+).
Step 2: Synthesis of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl) cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1] octane-8-carboxylate
Boc Boc
Figure imgf000273_0002
[00482] To a mixture of tert-butyl 3-(6,8-difluoro-2-((l- (hydroxymethyl)cyclopropyl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (1.9 g, 3.8 mmol, 1.0 eq) in DMF (20 mL) was added Imidazole (511 mg, 7.5 mmol, 2.0 eq) and TBSC1 (678 mg, 4.5 mmol, 1.2 eq). The mixture was stirred at room temperature for 3 h. The mixture was diluted with H2O (30 mL) and extracted with EtOAc (30 mL x 3). The combined organic layers were washed with H2O (20 mL x 3), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Petroleum ether / EtOAc = 5: 1) to give tert-butyl 3-(2-(( 1 - (((tert-butyldimethylsilyl)oxy)methyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin- 4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.5 g, 64.4%) as a white solid. 1H NMR (300 MHz, CDCl3): d 7.24 (t, J= 10.5 Hz, 1H), 4.40 - 3.99 (m, 6H), 3.79 (s, 3H), 3.67 (s, 2H), 3.42 (d, J= 12.9 Hz, 2H), 1.95 - 1.68 (m, 4H), 1.49 (s, 9H), 0.85 (s, 9H), 0.66 - 0.53 (m, 4H), -0.01 (s, 6H).
Step 3: Synthesis of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy) methyl) cyclopropyl)methoxy)-6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000274_0001
[00483] To a solution of tert-butyl 3-(2-((l-(((tert- butyldimethylsilyl)oxy)methyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 0.81 mmol, 1.0 eq) in THF (5 mL) was added 0.4 M (TMP^Zn MgCL LiCl (8.9 mL, 3.5 mmol, 4.4 eq). The reaction mixture was stirred at 70 °C for 2 h under N2. To the reaction mixture was added a solution of 7-fluoro-3-
(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl trifluoromethanesulfonate (600 mg, 1.1 mmol, 1.3 eq) and CPhos Pd G4 (66 mg, 0.08 mmol, 0.1 eq) in dioxane (6 mL). The reaction mixture was stirred at 80 °C for 12 h. The reaction was quenched with aq. NaHCCL solution (10 mL). The mixture was filtered through a Celite pad, and washed with EtOAc (5 mL). The filtrate was extracted with EtOAc (10 mL x 3). The combined organic layers were washed with brine (15 mL), dried over Na2SO4, filtered and concentrated to give a crude. The crude was purified by silica gel column chromatography (Petroleum ether / EtOAc = 5:1) to give tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy) methyl)cyclopropyl)methoxy)-6,8-difluoro-7- (7-fluoro-3-(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l -yl)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8-carboxylate (100 mg, 12.3%) as a colorless oil. 1H NMR (300 MHz, methanol-^): 7.89 (dd, J= 9.3, 5.7 Hz, 1H), 7.58 (d, J= 2.4 Hz, 1H), 7.34 (t, J= 8.7 Hz, 1H), 7.16 (d, J= 2.7 Hz, 1H), 5.28 (s, 2H), 4.65 - 4.18 (m, 6H), 3.95 (d, J= 3.0 Hz, 3H), 3.82 (s, 1H), 3.65 (s, 2H), 3.57 - 3.40 (m, 4H), 2.18 - 1.78 (m, 4H), 1.51 - 1.37 (m, 12H), 1.17 - 0.98 (m, 4H), 0.95 - 0.75 (m, 27H), 0.01 (s, 6H).
Step 4: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l- (hydroxymethyl)cyclopropyl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000275_0001
[00484] To a solution of tert-butyl 3-(2-((l-(((tert- butyldimethylsilyl)oxy)methyl)cyclopropyl)methoxy)-6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.10 mmol, 1.0 eq) in DCM (1 mL) was added HC1 in dioxane (0.3 mL, 1.2 mmol, 12.1 eq) at room temperature. The mixture was stirred at room temperature for 2 h. The reaction was adjusted to pH~8 with NH3-H2O. The mixture was concentrated to give a residue. The residue was re-dissolved in DCM / MeOH (10:1, 5 mL). The filtrate was collected by filtration and concentrated to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3- yl)-6,8-difluoro-2-((l-(hydroxymethyl)cyclopropyl)methoxy)-5-methoxyquinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (85 mg, crude) as a yellow solid. LCMS: 747.2 (M +H+).
Step 5: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l- (hydroxymethyl)cyclopropyl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate (1:0.2)
Figure imgf000276_0001
[00485] To a mixture of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l- (hydroxymethyl)cyclopropyl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl) ethynyl)naphthalen-2-ol (85 mg, 0.11 mmol, 1.0 eq) in DMF (2 mL) was added CsF (259 mg, 1.7 mmol, 15.0 eq). The mixture was stirred at 45 °C for 2 h. The filtrate was collected by filtration and concentrated to give a crude. The crude was purified by Prep- HPLC (ACN with 0.1% FA in water, 5% to 45%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3- yl)-6,8-difluoro-2-((l-(hydroxymethyl)cyclopropyl)methoxy)-5-methoxyquinazolin-7-yl)-5- ethynyl-6-fluoronaphthalen-2-ol formate (1 :0.2) (10 mg, 17.0% for two steps) as a white solid.
1 H NMR (400 MHz, CD3OD): d 7.86 (dd, J= 8.8, 6.0 Hz, 1H), 7.42 - 7.28 (m, 2H), 7.13 (s, 1H), 4.55 - 4.35 (m, 3H), 4.18 - 4.02 (m, 1H), 4.00 - 3.80 (m, 5H), 3.72 - 3.60 (m, 1H), 3.58 - 3.54 (m, 2H), 3.50 - 3.40 (m, 1H), 3.39 (s, 1H), 2.28 - 1.82 (m, 4H), 0.72 - 0.52 (m, 4H). 19F NMR (400 MHz, CD3OD): 6 -111.340, -132.245, -137.948. LCMS: 591.2 (M+H+).
Example 41
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l- (hydroxymethyl)cyclobutyl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol
Figure imgf000276_0002
Synthetic scheme:
Figure imgf000277_0001
Step 1: Synthesis of tert-butyl 3-(6,8-difluoro-2-((l-(hydroxymethyl)cyclobutyl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000277_0002
[00486] To a solution of cyclobutane- 1,1 -diyl dimethanol (554 mg, 4.77 mmol, 3.0 eq) in THF (7 mL) and DMF (7 mL) was added CS2CO3 (1.55 g, 4.77 mmol, 3.0 eq), tert-butyl 3-(2-chloro- 6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (700 mg, 1.59 mmol, 1.0 eq) at room temperature. The reaction mixture was stirred at 40 °C for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by column chromatography (Petroleum ether: EtOAc = 10: 1) to give tert-butyl 3-(6,8-difluoro-2-((l-(hydroxymethyl)cyclobutyl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (760 mg, 91 .8%) as a yellow liquid. LCMS: m/z 521.3 (M+H+).
Step 2: Synthesis of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl) cyclobutyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane-
8-carboxylate
Figure imgf000278_0001
[00487] To a solution of tert-butyl 3-(6,8-difluoro-2-((l- (hydroxymethyl)cyclobutyl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane- 8-carboxylate (760 mg, 1.46 mmol, 1.0 eq) in DMF (8.8 mL) was added Imidazole (199 mg, 2.92 mmol, 2.0 eq) and TBSC1 (264 mg, 1.75 mmol, 1.2 eq) at room temperature. The reaction mixture was stirred at room temperature for 3 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by column chromatography (Petroleum ether: EtOAc = 30: 1) to give tert-butyl 3-(2-((l-(((tert- butyldimethylsilyl)oxy)methyl)cyclobutyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (720 mg, 77.6%) as a colourless liquid. LCMS: m/z 635.3 (M+H+).
Step 3: Synthesis of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl) cyclobutyl)methoxy)-6,8-difluoro-7-(7-fluoro-3-(niethoxyniethoxy)-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000278_0002
[00488] To a solution of tert-butyl 3-(2-((l -(((tert-butyldimethylsilyl)oxy)methyl) cyclobutyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (120 mg, 0.19 mmol, 1.0 eq) in THF (2.4 mL) was added (TMP^ZnMgCLLiCl (0.4M, 2.85 mL, 1.14 mmol, 6.0 eq) under N2 atmosphere. The reaction mixture was stirred at 50 °C for 2 h. Then 7-fluoro-3-(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl trifluoromethanesulfonate (123 mg, 0.23 mmol, 1.2 eq), CPhos Pd G3 (15 mg, 0.019 mmol, 0.1 eq) and 1,4-di oxane (2.4 mL) were added to the reaction mixture. The reaction mixture was stirred at 80 °C for overnight. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (Petroleum ether: EtOAc = 5: 1) to give tert-butyl 3-(2-((l-(((tert- butyldimethylsilyl)oxy)methyl)cyclobutyl)methoxy)-6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (80 mg, 51.9%) as a yellow liquid. LCMS: m/z 453.1 (M-TBS)/2+H+).
Step 4: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l- (hydroxymethyl)cyclobutyl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000279_0001
[00489] To a solution of tert-butyl 3-(2-((l-(((tert- butyldimethylsilyl)oxy)methyl)cyclobutyl)methoxy)-6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 0.059 mmol, 1.0 eq) in ACN (2.4 mL) was added HCl/Dioxane (0.47 mL) at 0 °C under N2 atmosphere. The reaction mixture was stirred at 0 °C for 2 h. Then the reaction mixture was concentrated in vacuo to give 4-(4-((lR,5S)-3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l-(hydroxymethyl)cyclobutyl)methoxy)-5- methoxyquinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (crude) as a yellow liquid, which was used directly for the next step without any further purification. LCMS: m/z 761.3 (M+H+).
Step 5: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l- (hydroxymethyl)cyclobutyl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol
Figure imgf000280_0001
[00490] To a solution of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l- (hydroxymethyl)cyclobutyl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (crude) in DMF (6.0 mb) was added CsF (134 mg, 0.885 mmol, 15.0 eq). The reaction mixture was stirred at 40 °C for 6 h. Then the reaction mixture was filtered, and the filtrate was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 20% to 65%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-((l- (hydroxymethyl)cyclobutyl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen- 2-ol (1.0 mg, with 1.3 FA salt, 2.6% for two steps) as a white solid. 1H NMR (400 MHz, CD3OD): 3 8.50 (s, 1H), 7.90-7.80 (m, 1H), 7.37 - 7.27 (m, 2H), 7.12 (d, J= 2.4 Hz, 1H), 5.35- 5.25 (m, 1H), 4.57 (s, 1H), 4.50-4.30 (m, 3H), 4.20-3.90 (m, 3H), 3.90 (s, 3H), 3.67 (s, 2H), 3.65-3.55 (m, 1H), 3.52 - 3.42 (m, 2H), 2.09 - 1.82 (m, 1 OH). LCMS: m/z 605.2 (M+H+).
Example 42
(3R)-4-((l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7-fluoronaphthalen-l-yl)-
6,8-difluoro-5-methoxyquinazolin-2-yl)oxy)methyl)cyclopropyl)methyl)-3- methylmorpholine
Figure imgf000281_0001
Step 1: Synthesis of tert-butyl 3-(6,8-difluoro-2-((l-(hydroxymethyl)cyclopropyl)methoxy)-
5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000282_0001
[00491] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 1.13 mmol, 1.0 eq) in THF (5 mL) and DMF (5 mL) was added CS2CO3 (1.1 g, 3.40 mmol, 3.0 eq) and SM-2 (348 mg, 3.40 mmol, 3.0 eq) at room temperature. The reaction mixture was stirred at room temperature for 0.5 h and then stirred at 40 °C for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over NajSOi and concentrated to give a residue to give tert-butyl 3-(6,8-difluoro-2-((l- (hydroxymethyl)cyclopropyl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (660 mg, crude) as a yellow solid, which was directly used in the next step without purification. LCMS: m/z 507.1 (M+H+).
Step 2: Synthesis of tert-butyl 3-(6,8-difluoro-5-methoxy-2-((l-(((methylsulfonyl)oxy) methyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Boc Boc
Figure imgf000282_0002
[00492] To a solution of tert-butyl 3-(6,8-difluoro-2-((l- (hydroxymethyl)cyclopropyl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (575 mg, 1.14 mmol, 1.0 eq) in DCM (5.8 mL) was added TEA (345 mg, 3.41 mmol, 3.0 eq) and the mixture was stirred at room temperature for 5 min. Then to the mixture was added methanesulfonic anhydride (395 mg, 2.27 mmol, 2.0 eq) at 0 °C and stirred at room temperature for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue to give tert-butyl (lR,5S)-3-(6,8-difluoro- 5-methoxy-2-((l-(((methylsulfonyl)oxy)methyl)cyclopropyl)methoxy) quinazolin-4-yl)-3,8- diazabicyclo[3.2 l ]octane-8-carboxylate (620 mg, crude) as a yellow solid, which was directly used in the next step without purification. LCMS: m/z 585.2 (M+H+).
Step 3: Synthesis of tert-butyl 3-(6,8-difluoro-5-methoxy-2-((l-(((R)-3-methylmorpholino) methyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000283_0001
[00493] To a solution of tert-butyl 3-(6,8-difluoro-5-methoxy-2-((l- (((methylsulfonyl)oxy)methyl) cyclopropyl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2 l]octane-8-carboxylate (620 mg, 1.06 mmol, 1.0 eq) in DMF (8.7 mL) was added 3R-3 -methylmorpholine (128.7 mg, 1.27 mmol, 1.2 eq), KI (229 mg, 1.38 mmol, 1.3 eq) and NaHCOs (267 mg, 3.18 mmol, 3.0 eq), and the mixture was stirred at 85 °C for 3 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (20 mL x 3), dried over Na2SO4 and concentrated to afford the crude product. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc ::: 7:1 ) to give tert-butyl 3-(6,8-difluoro-5-methoxy-2-((l-(((R)-3- methylmorpholino)methyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane- 8-carboxylate (290 mg, 49.8% yield for 3 steps) as a yellow oil. LCMS: m/z 590.3 (M+H+).
Step 4: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-5-methoxy-2-((l-(((R)-3- methylmorpholino)methyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000283_0002
[00494] The solution of tert-butyl 3-(6,8-difluoro-5-methoxy-2-((l-(((R)-3- methylmorpholino) methyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (290 mg, 0.49 mmol, 1.0 eq) in THF (4.0 mL) was added LDA (2M THF solution) (1 .5 mL, 3.00 mmol, 6.0 eq) at -65 °C and stirred at the same temperature for 0.5 h under N2 atmosphere. Then the mixture was added 1,2- dibromotetrafluoroethane (1.02 g, 3.94 mmol, 8.0 eq) at -65 °C and stirred at the same temperature for 2 h under N2 atmosphere. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep- TLC (petroleum ether/EtOAc = 2: 1) to give tert-butyl 3-(7-bromo-6,8-difluoro-5-methoxy-2- ((l-(((R)-3-methylmorpholino)methyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (200 mg, 60.8%) as a yellow liquid. LCMS: m/z 670.2, 668.2 (M+H+).
Step 5: Synthesis of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl) naphthalen-l-yl)-5-methoxy-2-((l-(((R)-3-methylmorpholino)methyl)cyclopropyl) methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000284_0001
[00495] To tert-butyl 3-(7-bromo-6,8-difluoro-5-methoxy-2-((l-(((R)-3-methylmorpholino) methyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (75 mg, 0.11 mmol, 1.0 eq), ((2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l- yl)ethynyl)triisopropylsilane (61 mg, 0.14 mmol, 1.2 eq), CS2CO3 (110 mg, 0.34 mmol, 3.0 eq) and cataCXium A Pd G3 (16 mg, 0.02 mmol, 0.2 eq) in the microwave tube was added Toluene (3.8 mL) and water (0.8 mL). The tube was irradiated under microwave at 120 °C for 2 h under N2. Upon completion, the mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phases were dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (petroleum ether/EtOAc = 2: 1) to give tert-butyl 3-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxy- 2-((l-(((R)-3-methylmorpholino)methyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2 l ]octane-8-carboxylate (92 mg, 90.2%) as a yellow liquid. LCMS: m/z 914.4 (M+H+).
Step 6: Synthesis of (3R)-4-((l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(7- fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-2-yl)oxy)methyl) cyclopropyl)methyl)-3-methylmorpholine hydrochloride
Figure imgf000285_0001
[00496] To a solution of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxy-2-((l-(((R)-3- methylmorpholino)methyl)cyclopropyl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane- 8-carboxylate (40 mg, 0.04 mmol, 1.0 eq) in ACN (4.0 mL) was added HCl/dioxane(4M) (0.35 mb, 1.40 mmol, 32.0 eq) at 0 °C under N2 atmosphere. Then the reaction was stirred at 0 °C for 1 h. Then the mixture was concentrated to give a residue to afford (3R)-4-((l-(((4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen- l-yl)-5-methoxyquinazolin-2-yl)oxy)methyl)cyclopropyl)methyl)-3-methylmorpholine hydrochloride (36 mg, crude) as a yellow solid, which was directly used in the next step without purification. LCMS: m/z 814.4 (M-HC1+H+).
Step 7: Synthesis of (3R)-4-((l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-5-methoxyquinazolin-2- yl)oxy)methyl)cyclopropyl)methyl)-3-methylmorpholine
Figure imgf000285_0002
[00497] To a solution of (3R)-4-((l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(7- fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-2- yl)oxy)methyl)cyclopropyl)methyl)-3-methylmorpholine hydrochloride (36 mg, 0.04 mmol, 1.0 eq) in DMF (1.0 mL) was added CsF (100 mg, 0.66 mmol, 15 eq) at 40 °C under N2 atmosphere. Then the reaction was stirred at 40 °C for 3 h. The product was filtered to give a crude. The crude was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 20% to 60%) to give (3R)-4- ((l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro- 5-methoxyquinazolin-2-yl)oxy)methyl)cyclopropyl)methyl)-3-methylmorpholine (13 mg, with 1.0 FA salt, 45.2% yield for 2 steps) as a white solid. 1H NMR (400 MHz, DMSO-t/g): δ 8.29 - 8.16 (m, 3H), 7.75 - 7.58 (m, 3H), 4.56 (dd, J= 27.2, 10.8 Hz, 1H), 4.21-4.15 (m, 1H), 4.05 (d, J = 6.8 Hz, 1H), 3.98 - 3.77 (m, 2H), 3.70 (s, 3H), 3.68 - 3.37 (m, 7H), 3.36 - 3.14 (m, 3H), 3.07 - 2.88 (m, 2H), 2.35 - 2.22 (m, 1H), 2.17 - 2.06 (m, 1H), 1.92 - 1.76 (m, 1H), 1.75 - 1.51 (m, 4H), 0.90 - 0.78 (m, 3H), 0.72 - 0.60 (m, 1H), 0.57 - 0.43 (m, 2H), 0.38 - 0.28 (m, 1H). LCMS: m/z 658.2 (M+H+)
Example 43
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-7-(6-methyl-5-(trifluoromethyl)-lH-indazol-4- yl)quinazoline formate
Figure imgf000286_0001
Synthetic scheme:
Figure imgf000287_0001
Step 1: Synthesis of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-7-(6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5- (trifluoromethyl)-lH-indazol-4-yl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000287_0002
[00498] To a solution of compound tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (200 mg, 0.36 mmol, 1.0 eq) in THF (3 mL) was added (TMP^ZmMgCL’LiCl (2.7 mL, 1.1 mmol, 3.0 eq, 0.4 M in THF) under nitrogen atmosphere. The reaction was stirred at 50 °C for 2 h. To the reaction was added 4-bromo-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5- (trifluorom ethyl)- IH-indazole (154 mg, 0.43 mmol, 1.2 eq) and RuPhos Pd G2 (28 mg, 0.04 mmol, 0.1 eq) in dioxane (2 mL) under nitrogen atmosphere. The reaction was stirred at 100 °C for 12 h. The residue was partitioned between EtOAc (20 mL) and water (20 mL). The layers were separated. The aqueous layer was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over MgSO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (dichloromethane: methanol = 10: 1) to give tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-7-(6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5- (trifluoromethyl)- 1 H-indazol-4-yl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1 ]octane-8-carboxylate (50 mg, 16.7%) as a yellow solid. LCMS: 846.2 (M+H+).
Step 2: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-7-(6-methyl-5- (trifluoromethyl)-lH-indazol-4-yl)quinazoline formate (1:0.7)
Figure imgf000288_0001
[00499] To a solution of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-7-(6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5- (trifluoromethyl)- 1 H-indazol-4-yl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1 ]octane-8-carboxylate (50 mg, 0.06 mmol, 1.0 eq) in DCM (4 mL) was added HC1 in dioxane (2 mL, 4 N in dioxane). Then the reaction mixture was stirred at room temperature for 1 h. The mixture was concentrated and purified by prep-HPLC (acetonitrile with 0.1% FA in water, 20% to 60%) to give 4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2 -fluorotetrahydro- IH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxy-7-(6-methyl-5-(trifluoromethyl)-lH-indazol-4-yl)quinazoline formate (1 :0.7) (15.0 mg, 38.4%) as a white solid. 'H NMR (400 MHz, CD3OD): δ 8.50 (s, 0.7H), 7.71 (s, 1H), 7.67 (s, 1H), 5.43 (d, J- 53.2 Hz, 1H), 4.52 - 4.38 (m, 3H), 4.36 - 4.24 (m, 1H), 4.08 - 3.98 (m, 2H), 3.92 (s, 3H), 3.74 - 3.44 (m, 5H), 3.27 - 3.17 (m, 1H), 2.72 (s, 3H), 2.58 - 2.22 (m, 3H), 2.22 - 2.09 (m, 3H), 2.09 - 1.95 (m, 4H). 19F NMR (400 MHz, CD3OD): δ - 56.602, -132.678, -138.326, -173.890. LCMS: 662.3 (M+H+).
Example 44
4-(4-(3,8-diazabicyclo [3.2.1 ]octan-3-yl)-5-chloro-6,8-d ill uoro-2-(((2R, 7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate
Figure imgf000289_0001
Step 1: Synthesis of tert-butyl 3-(2,5-dichloro-6,8-difluoroquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000290_0001
[00500] To a solution of 2,4,5-trichloro-6,8-difluoroquinazoline (1.1 g, 4.08 mmol, 1.0 eq) in DCM (11.0 mL) was added tert-butyl 3,8-diazabicyclo[3.2. l]octane-8-carboxylate (1.3 g, 6.12 mmol, 1.5 eq) and DIEA (4.6 g, 35.51 mmol, 8.7 eq) at -40 °C. The mixture was stirred for 2 h at -40 °C. The mixture was diluted with water (10 mL) and extracted with DCM (20 mL). The organic layer was dried over Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (Petroleum ether / EtOAc = 4 / 1) to afford tertbutyl (lR,5S)-3-(2,5-dichloro-6,8-difluoroquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (1.3 g, 72.2 %) as a yellow solid. 1H NMR (300 MHz, CDCl3): 4 7.35 (t, J 8.7 Hz, H i), 4.42 -3.96 (m, 4H), 3.96 -3.47 (m, 2H), 1.93 -1.69 (m, 2H), 1 56 - 1.53 (m, 2H), 1.51 (s, 9H). LCMS: 445.0 (M+H+).
Step 2: Synthesis of tert-butyl 3-(5-chloro-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000290_0002
[00501] To a solution of tert-butyl 3-(2,5-dichloro-6,8-difluoroquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 1.13 mmol, 1.0 eq) in THF (5.0 mL) and DMF (5.0 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (233 mg, 1.46 mmol, 1.3 eq), CS2CO3 (1.1 g, 3.38 mmol, 3.0 eq) and DABCO (126 mg, 1.13 mmol, 1.0 eq). The reaction mixture was stirred at room temperature for 15 h under nitrogen atmosphere. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The organic phases were washed with brine (20 mL), dried with Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (DCM : MeOH = 100 : 1) to give tert-butyl 3-(5-chloro-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 78.3%) as a white solid. 1H NMR (400 MHz, CDCl3): d 7.25 - 7.18 (m, 1H), 5.40 - 5.13 (m, 1 H), 4.43 - 3.96 (m, 5H), 3 87 - 3.45 (m, 2H), 3.35 - 3.07 (m, 3H), 3.03 -- 2.89 (m, 1H), 2.37 - 2.06 (m, 3H ), 2.02 - 1.63 (m, 5H), 1.68 - 1.53 (m, 2H), 1.50 (s, 9H), 1.36 - 1.24 (m, 1H). LCMS: 568.2 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-bromo-5-chloro-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000291_0001
[00502] To a solution of tert-butyl 3-(5-chloro-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- 1H-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 0.88 mmol, 1.0 eq) in THF (5 mL) was added LDA (2.0 M, 0.88 mL, 1.76 mmol, 2.0 eq) dropwise at -65 °C. The reaction mixture was stirred at -65 °C for 0.5 h under nitrogen atmosphere. 1,2-dibromo-l,l,2,2-tetrafluoroethane (455 mg, 1.76 mmol, 2.0 eq) was added to the mixture. The reaction mixture was stirred at -65 °C for 0.5 h under nitrogen atmosphere. The reaction mixture was quenched with ammonium chloride aqueous solution (30 mL) and extracted with ethyl acetate (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane : Methanol = 100 : 1) to give tert-butyl 3- (7-bromo-5-chl oro-6, 8-difluoro-2-(((2R, 7aS)-2-fluorotetrahy dro- lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (333 mg, 58.6%) as a yellow solid. 1H NMR (400 MHz, CDCl3): d 5.27 (d, J = 54.0 Hz, 1H), 4.38 3.98 (m, 5H), 3.80 - 3.50 (m, 2H), 3.34 - 3.06 (m, 3H), 3.04 - 2.85 (m, 1H), 2.37 - 2.04 (m, 3H), 2 01 - 1.69 (m, 5H), 1 67 - 1 53 (m, 2H). 1.50 (s, 9H), 1.33 - 1.25 (m, 1H). LCMS: 646.1, 648.1 (M+H+). Step 4: Synthesis of tert-butyl 3-(5-chloro-6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.11octane-8-carboxylate
Figure imgf000292_0001
[00503] To a solution of tert-butyl 3-(7-bromo-5-chloro-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.16 mmol, 1.0 eq) in toluene (2 mL) and H2O (0.4 mL) was added compound ((2-fluoro-6-(methoxymethoxy)-8-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (159 mg, 0.31 mmol, 2.0 eq), K3PO4 (99 mg, 0.47 mmol, 3.0 eq), rac-BLDIME (8 mg, 0.023 mmol, 0.15 eq) and Pd2(dba)s (43 mg, 0.047 mmol, 0.3 eq). The reaction mixture was heated under microwave irradiation at 120 °C for 1 h under nitrogen atmosphere. The reaction mixture was poured into water (10 mL). The aqueous layer was extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane : Methanol = 60 : 1) to give tert-butyl 3-(5-chloro-6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (88 mg, 59.7%) as a yellow solid. LCMS: 952.2 (M+H+).
Step 5: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-chloro-6,8-difluoro-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-6-fluoro-
5-((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000293_0001
[00504] To a solution of tert-butyl 3-(5-chloro-6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)- 8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 0.05 mmol, 1.0 eq) in DCM (2.0 mb) was added HC1 in dioxane (1.0 mL) at room temperature. The reaction mixture was stirred at room temperature for 1 h. The reaction mixture was concentrated under reduced pressure to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-chloro-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (43 mg, crude) as a yellow soild. LCMS: 808.2 (M+H+).
Step 6: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-chloro-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5- ethynyl-6-fluoronaphthalen-2-ol formate (1:0.7)
Figure imgf000293_0002
[00505] To a solution of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-chloro-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (43 mg, 0.05 mmol, 1.0 eq) in DMF (1.0 mL) was added CsF (190 mg 1.25 mmol, 25.0 eq). Then the reaction mixture was stirred at 40 °C for 30 min. The mixture was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 50%) to give 4-(4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-5-chloro-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate (1:0.7) (17.6 mg, 51.4% yield of two steps) as a white solid. 1H NMR (400 MHz, CD3OD): δ 8.52 (brs, 0.7H), 7.94 - 7.83 (m, 1H), 7.41 - 7.29 (m, 2H), 7.19 - 7.11 (m, 1H), 5.37 (d, J- 53.6 Hz, 1H), 4.84 - 4.42 (m, 1H), 4.41 - 4.30 (m, 2H), 4.26 - 4.03 (m, 1H), 4.03 - 3.87 (m, 1H), 3.86 - 3.54 (m, 3H), 3.52 - 3.33 (m, 4H), 3.18 - 3.07 (m, 1H), 2.47 - 2.18 (m, 3H), 2.15 - 2.03 (m, 2H), 2.02 - 1.27 (m, 5H). 19F NMR (400 MHz, CD3OD): <5 - 111.093, -118.281, -127.324, -173.779. LCMS: 652.2 (M+H+).
Example 45
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-((2,2-difluoro-l-
(hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxy quinazolin-7-yl)-5-ethynyl-
6-fluoronaphthalen-2-ol formate
Figure imgf000294_0001
Figure imgf000294_0002
Synthesis scheme
Figure imgf000295_0001
Step 1: Synthesis of tert-butyl 3-(2-((2,2-difluoro-l-(hydroxymethyl)cyclopropyl)methoxy)-
6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000295_0002
[00506] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (1.0 g, 2.27 mmol, 1.0 eq) in THF (5 mL) and DMF (5 mL) was added (2,2-difluorocyclopropane-l,l-diyl)dimethanol (376.5 mg, 2.72 mmol, 1.2 eq), DABCO (254.5 mg, 2.27 mmol, 1.0 eq) and CS2CO3 (2.2 g, 6.81 mmol, 3.0 eq). The reaction mixture was stirred at room temperature for 15 h under N2. The mixture was added with water (20 mL) and extracted with EtOAc (25 mL x 2). The combined organic phases were washed with water (15 mL x 3), brine (15 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel chromatography (Petroleum ether: Ethyl acetate ~ 10: 1 to 1: 1) to give tert-butyl 3-(2-((2,2-difluoro-l-(hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5- methoxy quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (730 mg, 59.2%) as a yellow solid. LCMS: 543.2 (M+H+).
Step 2: Synthesis of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo [3.2.1]octane-8-carboxylate
Figure imgf000296_0001
[00507] To a solution of tert-butyl 3-(2-((2,2-difluoro-l- (hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (730 mg, 1.34 mmol, 1.0 eq) in DMF (8 mL) was added TBSC1 (245 mg, 1 60 mmol, 1 .2 eq) and Imidazole (182 mg, 2.68 mmol, 2.0 eq) at 0 °C. The reaction mixture was stirred at room temperature for 12 h under N2. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The combined organic phases were washed with water (15 mL x 3), brine (15 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by column chromatography (Petroleum ether: Ethyl acetate = 5: 1) to give tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (620 mg, 70.2%) as a yellow solid. LCMS: 657.2 (M+H+). Step 3: Synthesis of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000297_0001
[00508] To a solution of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.15 mmol, 1.0 eq) in THF (2 mL) was added (TMP^Zn.MgCh.LiCl (1 mL, 0.90 mmol, 6.0 eq) dropwise. The reaction mixture was stirred at 50 °C for 2 h under N2. To the mixture was added a solution of 7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl trifluoromethanesulfonate (97 mg, 0.18 mmol, 1.2 eq) and CPhos Pd G4 (12 mg, 0.01 mmol, 0.1 eq) in Dioxane (2 mL). The reaction mixture was stirred at 50 °C for 12 h. The mixture was filtered and the filtrate was concentrated to give a residue. The residue was purified by silica gel column chromatography (Petroleum ether: Ethyl acetate = 5: 1) to give tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl)-2,2- difluorocyclopropyl) methoxy)-6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl) naphthal en-l-yl)-5-methoxyquinazolin-4-yl)-3, 8- diazabicyclo[3.2.1]octane-8-carboxylate (110 mg, 69.4%) as a yellow solid. 1H NMR (300 MHz, CDCl3): d 7.76 - 7.71 (m, 1H), 7.46 (d, J= 2.7 Hz, 1H), 7.25 - 7.21 (m, 1H), 7.15 (s, 1H), 5.24 (s, 2H), 4.58 - 4.52 (m, 1H), 4.45 - 4.39 (m, 1H), 4.24 - 4.25 (m, 2H), 3.90 (s, 3H), 3.80 - 3.65 (m, 3H), 3.47 (s, 3H), 3.27 - 3.23 (m, 1H), 2.02 - 1.97 (m, 1H), 1.85 - 1.78 (m, 2H), 1.46 (s, 9H), 1.20 (s, 2H), 1.13 - 1.03 (m, 2H), 0.83 - 0.78 (m, 29H), 0.65 - 0.58 (m, 2H), 0.01 (s, 6H).
Step 4 Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-((2,2-difluoro-l- (hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000298_0001
[00509] To a solution of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (110 mg, 0.10 mmol, 1.0 eq) in DCM (2 mL) was added HCl/Dioxane (0.6 mL) at 0 °C. The reaction mixture was stirred at room temperature for 3 h under Ni. The mixture was concentrated to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-((2,2- difluoro-l-(hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (100 mg, crude) as a yellow solid. LCMS: 783.2 (M+H+).
Step 5 Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-((2,2-difluoro-l- (hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate (1:0.3)
Figure imgf000298_0002
[00510] To a solution of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-((2,2-difluoro-l- (hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (100 mg, 0.12 mmol, 1.0 eq) in DMF (2.0 mL) was added CsF (364 mg, 2.40 mmol, 20.0 eq). The mixture was stirred at 50 °C for 3 h. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 15% to 50%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-((2,2-difluoro-l- (hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate (1:0.3) (30.7 mg, 46.8%, two steps yield) as a white solid.
Figure imgf000298_0003
NMR (300 MHz, CD3OD): δ 7.86 (dd, J= 9.3, 5.7 Hz, 1H), 7.41 - 7.30 (m, 2H), 7.12 (d, J= 2.4 Hz, 1H), 4.76 - 4.65 (m, 1H), 4.56 - 4.52 (m, 1H), 4.50 - 4.41 (m, 1H), 4.15 - 4.02 (m, 1H), 3.88 (s, 3H), 3.84 - 3.78 (m, 4H), 3.63 (d, J= 13.5 Hz, 1H), 3.45 (d, J= 13.5 Hz, 1H), 3.37 (s, 1H), 2.20 - 2.06 (m, 1H), 2.00 - 1.89 (m, 3H), 1.65 - 1.48 (m, 2H). 19F NMR (300 MHz, CD3OD): δ -111.324, -132.329, -137.853, -138.60 (d, JF-F = 171.9 Hz, JF-H = 6.0 Hz, IF), - 140.34 (d, JF-F = 172.2 Hz, IF). LCMS: 627.3 (M+H+).
Example 46
4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy-4-(l-(methoxymethyl)-3,8-diazabicyclo [3.2.1] octan-3-yl)quinazolin-7-yl)-5- ethynyl-6-fluoronaphthalen-2-ol
Figure imgf000299_0001
Synthetic scheme:
Figure imgf000300_0001
Step 1: Synthesis of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-l-
(methoxymethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000300_0002
[00511] To a solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (476 mg, 1.80 mmol, 1.5 eq) in DCM (10 mL) was added DIEA (1.4 g, 10.47 mmol, 8.7 eq) and tert-butyl 1- (methoxymethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (600 mg, crude, 1.20 mmol, 1.0 eq) in DCM (4.5 mL) dropwise at -40 °C under argon. After that, the reaction mixture was stirred for 2 h at -40 °C. Then the reaction mixture was quenched with water (20 mL) and extracted with DCM (20 mL x 3). The organic layer was washed with brine (50 mL), dried over Na2SO4 and concentrated to give the residue, which was purified by silica gel column chromatography (petroleum ether/EtOAc = 20: 1) to give tert-butyl 3-(2-chloro-6,8-difluoro-5- methoxyquinazolin-4-yl)-l-(methoxymethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (386 mg, yield 66.2% for two steps) as a yellow solid. LCMS: m/z 484.8 (M+H+).
Step 2: Synthesis of compound tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-(methoxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000301_0001
[00512] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-l- (methoxymethyl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (400 mg, 0.82 mmol, 1.0 eq), ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methanol (171 mg, 1.07 mmol, 1.3 eq) in THF (4.8 mL) and DMF (4.8 mL) was added DABCO (93 mg, 0.82 mmol, 1.0 eq) and CS2CO3 (806 mg, 2.47 mmol, 3.0 eq) at room temperature under N2 atmosphere. The reaction mixture was stirred at room temperature for 12 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with water (30 mL x 3) and brine (30 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by silica gel column chromatography (DCM/MeOH = 10: 1) to give tert-butyl 3- (6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-4-yl)-l-(methoxymethyl)-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (250 mg, 49.9%) as a yellow solid. LCMS: m/z 608.3 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-(methoxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000302_0001
[00513] To a solution of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-(methoxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (105 mg, 0.17 mmol, 1.0 eq) in THF (3.5 mL) was added LDA (2N in THF, 0.52 mL, 1.04 mmol, 6.0 eq) at -65 °C under N2 atmosphere. The reaction mixture was stirred at -65 °C for 0.5 h. Then the mixture was added 1,2-dibromo-
1,1,2,2-tetrafluoroethane (360 mg, 1.38 mmol, 8.0 eq) and stirred at 25 °C for 15 h. The mixture was quenched with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (30 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by silica gel column chromatography (DCM/MeOH = 10: 1) to give tert-butyl 3 -(7 -bromo-6, 8-difluoro-2-(((2R, 7aS)-2-fluorotetrahy dro- 1 H-pyrrolizin-7 a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-l-(methoxymethyl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (90 mg, 75.8%) as a yellow liquid. LCMS: m/z 686.2, 688.2 (M+H+).
Step 4: Synthesis of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-(methoxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000302_0002
[00514] Tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-(methoxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (90 mg, 0.13 mmol, 1.0 eq), ((2-fluoro-6- (methoxymethoxy )- 8 -(4, 4, 5 , 5 -tetramethyl - 1 , 3 , 2 - di oxab orol an-2-y l)naphthal en- 1 - yl)ethynyl)triisopropylsilane (81 mg, 0.16 mmol, 1.2 eq), cataCXium A Pd G3 (19 mg, 0.026 mmol, 0.2 eq) and CS2CO3 (128 mg, 0.39 mmol, 3.0 eq) were placed in the reaction bottle. A solution of PhMe/H2O (5: 1, 6.0 mL) was added at room temperature. The mixture was stirred under microwave irradiation at 100 °C for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep- TLC (DCM/MeOH = 10: 1) to give tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)- 8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-(methoxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (90 mg, 69.2%) as a yellow liquid. LCMS: m/z 992.4 (M+H+).
Step 5: Synthesis of 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxy-4-(l-(methoxymethyl)-3,8-diazabicyclo[3.2.1]octan-3-yl)quinazolin- 7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000303_0001
[00515] To a solution of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-(methoxymethyl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (90 mg, 0.09 mmol, 1.0 eq) in ACN (3.6 mL) was added 4N HCl/Dioxane (0.9 mL) at 0 °C under N2 atmosphere. The reaction mixture was stirred at 0 °C for 4 h. Then the reaction mixture was concentrated in vacuo to give 4-(6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-4-(l- (methoxymethyl)-3,8-diazabicyclo[3.2.1]octan-3-yl)quinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (90 mg, crude) as a yellow liquid, which was used directly for the next step without any further purification. LCMS: m/z 848.3 (M+H+).
Step 6: Synthesis of 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxy-4-(l-(methoxymethyl)-3,8-diazabicyclo[3.2.1]octan-3-yl)quinazolin- 7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol
Figure imgf000304_0001
[00516] To a solution of 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxy-4-(l-(methoxymethyl)-3,8-diazabicyclo[3.2.1]octan-3- yl)quinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (90 mg, 0.09 mmol, 1.0 eq) in DMF (1.0 mL) was added CsF (207 mg, 1.36 mmol, 15.0 eq). The reaction mixture was stirred at 40 °C for 6 h. Then the reaction mixture was filtered and the filtrate was concentrated to give a residue, which was purified by Prep-HPLC (acetonitrile in water with 0.1% FA, 10% to 26%) to give 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxy-4-(l-(methoxymethyl)-3,8-diazabicyclo[3.2.1]octan-3- yl)quinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-ol (20.2 mg, with 0.68 FA salt, 30.7% for two steps) as a white solid.
Figure imgf000304_0002
NMR (400 MHz, DMSO-d6): 3 10.21 (brs, 1H), 8.00 (dd, J= 8.8, 2.8 Hz, 1H), 7.48 (t, J = 8.8 Hz, 1H), 7.41 (d, J= 2.0 Hz, 1H), 7.19 (s, 1H), 5.28 (d, J= 54.2 Hz, 1H), 4.18 - 3.86 (m, 4H), 3.76 (s, 3H), 3.65 - 3.51 (m, 1H), 3.50 - 3.17 (m, 9H), 3.15-3.03 (m, 2H), 3.01 (s, 1H), 2.90 - 2.78 (m, 1H), 2.12 (s, 1H), 2.10 - 1.94 (m, 2H), 1.92 - 1.50 (m, 6H), 1.50 - 1.32 (m, 1H). LCMS: m/z 692.2 (M+H+).
Example 47
4-(3,8-diazabicyclo [3.2.1] octan-3-yl)-7-(3-(difluoromethoxy)-8-ethynyl-7-fluoronaphthalen- l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquin azoline
Figure imgf000305_0001
Synthetic scheme:
Figure imgf000305_0002
Step 1: Synthesis of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000306_0001
[00517] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (400 mg, 0.91 mmol, 1.0 eq), ((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (174 mg, 1.09 mmol, 1.2 eq) in THF (4 mL) and DMF (4 mL) was added DABCO (102 mg, 0.91 mmol, 1.0 eq) and CS2CO3 (889 mg, 2.73 mmol, 3.0 eq) at room temperature under N2 atmosphere. The reaction mixture was stirred at room temperature for 15 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over NaiSO4 and concentrated to give a residue. The crude product was purified by column chromatography (DCM: MeOH = 30: 1) to give tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (430 mg, 83.8%) as a yellow solid. LCMS: m/z 564.2 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Boc Boc
Figure imgf000306_0002
[00518] To a solution of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1 ]octane-8- carboxylate (400 mg, 0.71 mmol, 1.0 eq) in THF (13.4 mL) was added LDA (2N, 2.13 mL, 4.26 mmol, 6.0 eq) at -65 °C under N2 atmosphere. The reaction mixture was stirred at -65 °C for 0.5 h. Then l,2-dibromo-l,l,2,2-tetrafluoroethane (1.5 g, 5.68 mmol, 8.0 eq) was added to the reaction mixture and stirred at -65 °C for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by column chromatography (DCM: MeOH = 10: 1) to give tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (440 mg, 96.4%) as a yellow liquid. LCMS: m/z 642.2 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-(3-(difluoromethoxy)-7-fluoro-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000307_0001
[00519] Tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (70 mg, 0 11 mmol, 1.0 eq), ((6-(difluoromethoxy)-2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (67 mg, 0.13 mmol, 1.2 eq), Cxium A Pd G3 (16 mg, 0.022 mmol, 0.2 eq) and CS2CO3 (108 mg, 0.33 mmol, 3.0 eq) were placed in the reaction bottle. A solution of PhMe/LLO (5/1, 4.32 mL) was added at room temperature. The mixture was stirred with microwave reactor at 120 °C for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1) to give tert-butyl 3-(7-(3-(difluoromethoxy)-7- fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2 l ]octane-8-carboxylate (80 mg, 76.2%) as a yellow liquid. LCMS: m/z 954.3 (M+H+).
Step 4: Synthesis of (bicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethoxy)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline
Figure imgf000308_0001
[00520] To a solution of tert-butyl 3-(7-(3-(difluoromethoxy)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (60 mg, 0.063 mmol, 1.0 eq) in ACN (2.4 mb) was added HCl/Dioxane (4M, 0.51 mb) at 0 °C under N2 atmosphere. The reaction mixture was stirred at 0 °C for 2 h. Then the reaction mixture was concentrated in vacuo to give (bicyclo[3.2.1]octan-3-yl)-7-(3- (difluoromethoxy)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (crude) as a yellow liquid, which was used directly for the next step without any further purification.
LCMS: m/z 854.3 (M+H+).
Step 5: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethoxy)-8-ethynyl- 7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lTT-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazoline
Figure imgf000308_0002
[00521] To a solution of (bicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethoxy)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (crude) in DMF (1.5 mb) was added CsF (144 mg, 0.945 mmol, 15.0 eq) The reaction mixture was stirred at 40 °C for 6 h. Then the reaction mixture was filtered, and the filtrate was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 15% to 50%) to give 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethoxy)- 8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazoline (19.6 mg, with 0.8 FA salt, 41.8% for two steps) as a white solid. 1H NMR (400 MHz, DMSO-d6): δ 8.37 - 8.17 (m, 2H), 8.03 (d, J= 2.0 Hz, 1H), 7.74 - 7.21 (m, 3H), 5.27 (d, J= 52.0 Hz, 1H), 4.30-3.90 (m, 4H), 3.77 (s, 4H), 3.60-3.20 (m, 6H), 3.10-2.90 (m, 3H), 3.01 (s, 1H), 2.90-2.70 (m, 1H), 2.20-1.51 (m, 10H). LCMS: m/z 698.2 (M+H+).
Example 48
(l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethoxy)-8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-5-methoxyquinazolin-2-yl)oxy)methyl)-2,2- difluorocyclopropyl)methanol formate
Figure imgf000309_0001
Synthetic scheme:
Figure imgf000310_0001
Step 1: Synthesis of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-7-(3-(difliioromethoxy)-7-fliioro-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000310_0002
[00522] To a solution of tert-butyl 3-(7-bromo-2-((l-(((tert-butyldimethylsilyl)oxy)methyl)- 2,2-difluorocyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.13 mmol, 1.0 eq) and ((6- (difluoromethoxy)-2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l- yl)ethynyl)triisopropylsilane (84.5 mg, 0.16 mmol, 1.2 eq) in toluene (1.5 mL) and H2O (0.3 mL) was added K3PO4 (55.1 mg, 0.26 mmol, 2.0 eq), rac-BI-DIME (8.6 mg, 0.026 mmol, 0.2 eq) and Pd2(dba)s (18.3 mg, 0.02 mmol, 0.15 eq). The mixture was heated under microwave irradiation at 120 °C for 1 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and H2O (3 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (3 mL), dried over NajSO4 and concentrated to give a crude. The crude was purified by Prep-TLC (DCM: MeOH ~ 15: 1) to give tert-butyl 3-(2- ((l-(((tert-butyldimethylsilyl)oxy)methyl)-2,2-difluorocyclopropyl)methoxy)-7-(3- (difluoromethoxy)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-5- methoxy quinazolin-4-yl)-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (52 mg, 36.4%) as a yellow solid. 1H NMR (400 MHz, CDCl3): δ 7.85 (dd, , J= 9.2, 6.0 Hz, 1H), 7.63 (d, J= 2.2 Hz, 1H), 7.38 (t, J= 8.8 Hz, 1H), 7.27 (s, 1H), 6.63 (t, J= 73.2 Hz, 1H), 4.63 - 4.53 (m, 1H), 4.49 - 4.40 (m, 1H), 4.30 (s, 2H), 3.96 (s, 3H), 3.88 - 3.83 (m, 1H), 3.84 - 3.79 (m, 1H), 3.59 - 3.30 (m, 2H), 2.12 - 2.01 (m, 1H), 1.98 - 1.89 (m, 2H), 1.78 - 1.63 (m, 1H), 1.50 (s, 9H), 1.39 - 1.33 (m, 1H), 1.29 - 1.25 (m, 1H), 0.95 - 0.88 (m, 29H), 0.72 - 0.63 (m, 3H), 0.04 (s, 6H).
Step 2: Synthesis of (l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethoxy)-7- fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-5-methoxyquinazolin-2- yl)oxy)methyl)-2,2-difluorocyclopropyl)methanol
Figure imgf000311_0001
[00523] To a solution of tert-butyl 3-(2-((l-(((tert-butyldimethylsilyl)oxy)methyl)-2,2- difluorocyclopropyl)methoxy)-7-(3-(difluoromethoxy)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (52 mg, 0.05 mmol, 1.0 eq) in DCM (1.0 mL) was added HCl/Dioxane (0.3 mL) at 0 °C. The reaction mixture was stirred at room temperature for 3 h under N2. The mixture was concentrated to give (l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7- (3-(difluoromethoxy)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-5- methoxyquinazolin-2-yl)oxy)methyl)-2,2-difluorocyclopropyl)methanol (45 mg, crude) as a yellow solid. LCMS: 833.0 (M+H+).
Step 3: Synthesis of (l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3-(difluoromethoxy)-8- ethynyl-7-fluoronaphthalen-l-yI)-6,8-difluoro-5-methoxyqiiinazolin-2-yI)oxy)methyI)-2,2- difluorocyclopropyl)methanol formate(l : 0.43)
Figure imgf000312_0001
[00524] To a solution of (l-(((4-(3,8-diazabicyclo[3.2 l ]octan-3-yl)-7-(3-(difluoromethoxy)- 7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-5-methoxyquinazolin-2- yl)oxy)methyl)-2,2-difluorocyclopropyl)methanol (45 mg, 0.54 mmol, 1.0 eq) in DMF (2.0 mL) was added CsF (1.6 g, 10.4 mmol, 20.0 eq). The mixture was stirred at 50 °C for 4 h. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 15% to 50%) to give (l-(((4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(3- (difluoromethoxy)-8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-5-methoxyquinazolin-2- yl)oxy)methyl)-2,2-difluorocyclopropyl)methanol formate(l:0.43) (22.4 mg, 62.4%, two steps yield) as a white solid. 1H NMR (400 MHz, CD3OD): 3 8.52 (brs, 0.43H), 8.10 (dd, J= 9.2, 6.0 Hz, 1H), 7.86 (d, J= 2.4 Hz, 1H), 7.49 (t, J= 8.8 Hz, 1H), 7.42 (d, J= 2.4 Hz, 1H), 7.05 (t, =
73.4 Hz, 1H), 4.71 - 4.66 (m, 1H), 4.60 - 4.48 (m, 2H), 4.12 (d, J= 13.6 Hz, 1H), 4.01 (d, J =
17.4 Hz, 2H), 3.90 (s, 3H), 3.78 (s, 2H), 3.69 (d, J= 13.6 Hz, 1H), 3.58 - 3.46 (m, 2H), 2.29 - 2.12 (m, 1H), 2.08- 1.90 (m, 3H), 1.64 - 1.53 (m, 1H), 1.52- 1.43 (m, 1H). 19F NMR (400 MHz, CD3OD): 3 -84.083, -107.016, -131.938, -137.726, -138.620 (d, JF-F = 172.4 Hz, JF-H = 5.6 Hz, IF), -140.322 (d, JF-F = 172.4 Hz, IF). LCMS: 677.0 (M+H+).
Example 49
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-
(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline formate
Figure imgf000312_0002
Synthesis scheme
Figure imgf000313_0001
Step 1: Synthesis of tert-butyl 3-(6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000313_0002
[00525] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (270 mg, 0.61 mmol, 1.0 eq) in THF (3 mL) and DMF (3 mL) was added ((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (136 mg, 0.80 mmol, 1.3 eq), DABCO (69 mg, 0.61 mmol, 1.0 eq) and CS2CO3 (598 mg, 1.84 mmol, 3.0 eq). The reaction mixture was stirred at room temperature for 15 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and water (5 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4, filtered and concentrated to give a crude. The crude was purified by Prep-TLC (petroleum ether / EtOAc = 1 : 1) to give tert-butyl 3- (6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)- 5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (300 mg, 85.2%) as a green solid. 1H NMR (400 MHz, CDCI3): δ 7.23 (t, J= 10.8 Hz, 1H), 5.32 (d, J= 54.0 Hz, 1H), 4.97 (s, 2H), 4.40 - 4.01 (m, 6H), 3.97 - 3.84 (m, 1H), 3.78 (s, 3H), 3.66 - 3.57 (m, 1H), 3.53 - 3.30 (m, 3H), 3.20 - 3.11 (m, 1H), 2.88 - 2.68 (m, 2H), 2.44 - 2.23 (m, 2H), 1.92 - 1.80 (m, 2H), 1.76 - 1.63 (m, 2H), 1.49 (s, 9H). LCMS: 576.3 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000314_0001
[00526] To a solution of tert-butyl 3-(6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (80 mg, 0.14 mmol, 1.0 eq) in THF (2 mL) was added LDA (0.2 mL, 0.3 mmol, 2.0 eq) at -78 °C under N2 atmosphere. The mixture was stirred at - 78 °C for 30 min. The mixture was added l,2-dibromo-l,l,2,2-tetrafluoroethane (108 mg, 0.42 mmol, 3.0 eq) at the same temperature, and stirred for 2 h. The reaction was quenched with water (5 mL). The mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (5 mL), brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by Prep-TLC (DCM / MeOH = 15: 1) to give tert-butyl 3-(7-bromo-6,8- difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-4-yl)-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (60 mg, 65.9%) as a green solid. LCMS: 654.2, 656.1 (M+H+).
Step 3: Synthesis of tert-butyl 3-(6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l- yl)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000315_0001
[00527] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (70 mg, 0.11 mmol, 1.0 eq) and ((2-fluoro-8-(4, 4,5,5- tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (73 mg, 0.16 mmol, 1.5 eq) in Toluene (1.5 mL) and H2O (0.3 m ) was added K3PO4 (45 mg, 0.21 mmol, 2.0 eq), rac-BI-DIME (7 mg, 0.03 mmol, 0.3 eq) and Pd2(dba)3 (15 mg, 0.02 mmol, 0.15 eq). The mixture was heated under microwave irradiation at 120 °C for 1 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and H2O (5 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4 and concentrated to a crude The crude was purified by Prep-TLC (DCM / MeOH = 15: 1) to give tert-butyl 3-(6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 51.9%) as a white solid. LCMS: 900.3 (M+H+). Step 4: Synthesis of tert-butyl 3-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2- (((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate Boc Boc
Figure imgf000316_0001
[00528] To a mixture of tert-butyl 3-(6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2 l ]octane-8-carboxylate (50 mg, 0.06 mmol, 1.0 eq) in DMF (1 mL) was added CsF (253 mg, 1.67 mmol, 30.0 eq). The mixture was stirred at 50 °C for 2 h. The filtrate was collected by filtration and concentrated to give a residue. The residue was re-dissolved in DCM/MeOH (10/1, 5 mL), filtered and concentrated to give tert-butyl 3-(7-(8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (45 mg, crude) as a yellow solid. LCMS: 744.3 (M+H+).
Step 5: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7-fluoroiiaphthaleii- l-yl)-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazoline formate (1:1)
Figure imgf000316_0002
[00529] To a solution of tert-butyl 3-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2- (((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (45 mg, 0.06 mmol, 1.0 eq) in DCM (1 mL) was added TFA (0.1 mL, 0.6 mmol, 10.0 eq) at 0 °C. The mixture was stirred at room temperature for 1 h. The reaction was adjusted pH~8 with NFT’FFO. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 5% to 35%) to give 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazoline formate (1 : 1) (16 mg, 41.2% for two steps) as a white solid. 1H NMR (400 MHz, CD3OD): d 8.20 - 8.08 (m, 2H), 7.66 (t, J= 7.2 Hz, 1H), 7.56 (d, J= 7.2 Hz, 1H), 7.46 (t, J= 8.8 Hz, 1H), 5.39 (d, J= 53.6 Hz, 1H), 5.04 (s, 2H), 4.63 - 4.48 (m, 1H), 4.45 - 4.30 (m, 2H), 4.24 - 4.07 (m, 3H), 4.02 - 3.92 (m, 1H), 3.91 (s, 3H), 3.82 - 3.57 (m, 2H), 3.65 - 3.43 (m, 3H), 3.42 - 3.25 (m, 1H), 2.92 - 2.76 (m, 2H), 2.53 - 2.23 (m, 3H), 2.21 - 2.01 (m, 3H). 19F NMR (400 MHz, CD3OD): -106.358, -131.969, -136.594, -173.647.
LCMS: 644.3 (M+H+).
Example 50
4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy-4-(l-methyl-3,8-diazabicyclo [3.2.1] octan-3-yl)quinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol formate
Figure imgf000317_0001
Synthetic scheme:
Boc
Figure imgf000318_0001
Step 1: Synthesis of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-l- methyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000318_0002
To a solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (1.4 g, 5.3 mmol, 1.2 eq) in DCM (15 mL) was added DIEA (5.0 g, 38.4 mmol, 8.7 eq) and tert-butyl l-methyl-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (1.0 g, crude, 4.4 mmol, 1.0 eq) in DCM (4 mL) at - 40 °C under argon. After that, the reaction mixture was stirred for 1 h at -40 °C. Then the reaction mixture was quenched with water (20 mL) and separated. The aqueous layer was extracted with DCM (20 mL x 3). The organic layers were washed with brine (20 mL), dried over NaiSO4 and concentrated to give a residue. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc = 20: 1) to give tert-butyl 3-(2-chloro-6,8-difluoro-5- methoxyquinazolin-4-yl)-l-methyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (231 mg, 25.5% for two steps) as a yellow solid. LCMS: 455.1 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)- l-methyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000319_0001
[00530] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-l- methyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 0.13 mmol, 1.0 eq) in THF (2 mL) was added LDA (0.4 mL, 0.80 mmol, 6.0 eq) at -65 °C under N2 atmosphere. The mixture was stirred at -65 °C for 30 min. The mixture was added l,2-dibromo-l,l,2,2-tetrafluoroethane (103 mg, 0.40 mmol, 3.0 eq) at the same temperature, and stirred for 2 h. The reaction was quenched with water (5 mL). The mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4 and concentrated to give a crude. The crude product was purified by prep-TLC (petroleum ether / EtOAc = 2:1) to give tert-butyl 3-(7- bromo-2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-l-methyl-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (51 mg, 72.4%) as a green solid. LCMS: 533.0, 535.0 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-methyl-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000320_0001
[00531] A solution of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-
1-methyl-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (90 mg, 0.17 mmol, 1.0 eq), ((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (35 mg, 0.22 mmol, 1.3 eq), DABCO (19 mg, 0.17 mmol, 1.0 eq) and CS2CO3 (165 mg, 0.51 mmol, 3.0 eq) in THF (1.0 mL) and DMF (1.0 mL) was stirred at room temperature for 15 h under nitrogen atmosphere. The mixture was added H2O (2 mL). The resulting mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (3 mL x 3), brine (3 mL), dried over Na2SO4 and concentrated to give a crude. The crude product was purified by silica gel column chromatography (DCM / MeOH = 15:1) to give tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-
2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-methyl-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (90 mg, 81.1%) as a white solid. LCMS: 656.2, 658.2 (M+H+).
Step 4: Synthesis of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-methyl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000320_0002
[00532] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-methyl-3,8-diazabicyclo [3.2.1 ]octane-8-carboxylate (45 mg, 0.07 mmol, 1.0 eq) and ((2-fluoro-6-(methoxymethoxy)-8- (4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (53 mg, 0.10 mmol, 1.5 eq) in Toluene (1.5 mL) and 1LO (0.3 mL) was added K3PO4 (19 mg, 0.14 mmol, 2.0 eq), rac-BI-DIME (5 mg, 0.01 mmol, 0.2 eq) and Pd2(dba)3 (9 mg, 0.01 mmol, 0.15 eq). The mixture was heated under microwave irradiation at 120 °C for 1 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and H2O (3 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (3 mL), dried over Na2SO4 and concentrated to a crude. The crude was purified by Prep-TLC (DCM / MeOH = 15: 1) to give tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-methyl-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (25 mg, 37.7%) as a white solid. LCMS: 962.4 (M+H+). Step 5: Synthesis of 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxy-4-(l-methyl-3,8-diazabicyclo[3.2.1]octan-3-yl)quinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000321_0001
[00533] To a solution of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-l-methyl-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (35 mg, 0.04 mmol, 1.0 eq) in DCM (1 mL) was added HC1 in dioxane (0.3 mL, 1.2 mmol, 33.3 eq) at room temperature. The mixture was stirred at room temperature for 1 h. The reaction was adjusted to pH~8 with NH3-H2O. The mixture was concentrated to give a residue. The residue was re-dissolved in DCM/MeOH (10: 1, 5 mL). The filtrate collected by filtration was concentrated to give 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxy-4-(l-methyl-3,8-diazabicyclo[3.2.1]octan-3-yl)quinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (30 mg, crude) as a yellow solid. LCMS: 818.3 (M+H+).
Step 6: Synthesis of 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxy-4-(l-methyl-3,8-diazabicyclo[3.2.1]octan-3-yl)quinazolin-7-yl)-5- ethynyl-6-fluoronaphthalen-2-oformate (1:0.46)
Figure imgf000322_0001
[00534] To a mixture of 4-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxy-4-(l-methyl-3,8-diazabicyclo[3.2.1]octan-3-yl)quinazolin-7-yl)- 6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (30 mg, 0.04 mmol, 1.0 eq) in DMF (1 mL) was added CsF (85 mg, 0.56 mmol, 15.0 eq). The mixture was stirred at 50 °C for 2 h. The filtrate collected by filtration was concentrated to give a crude. The crude was purified by Prep- HPLC (ACN with 0.1% FA in water, 5% to 35%) to give 4-(6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-4-(l-methyl-3,8- diazabicyclo[3.2 l ]octan-3-yl)quinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-oformate (1:0.46) (21 mg, 81.7% for two steps) as a white solid. 'H WIR (400 MHz, CD3OD): 3 8.51(brs, 0.46H), 7.87 (dd, J= 9.2, 5.6 Hz, 1H), 7.40 - 7.28 (m, 2H), 7.13 (s, 1H), 5.38 (d, J= 52.8 Hz, 1H), 4.59 - 4.29 (m, 3H), 4.09 - 3.93 (m, 1H), 3.88 (s, 3H), 3.87 - 3.77 (m, 1H), 3.72 - 3.34 (m, 6H), 3.21 - 3.10 (m, 1H), 2.50 - 1.55 (m, 10H), 1.42 (d, J= 12.4 Hz, 3H). 19F NMR (400 MHz, CD3OD): 3 -111.267, -132.701, -137.411, -173.935. LCMS: 662.2 (M+H+).
Example 51
4-(3,8-diazabicyclo [3.2.1] octan-3-yl)-5-chloro-7-(3-(difluoromethoxy)-8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazoline formate
Figure imgf000323_0001
Step 1: Synthesis of tert-butyl 3-(5-chloro-7-(3-(difluoromethoxy)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000323_0002
[00535] To a solution of tert-butyl 3-(7-bromo-5-chloro-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (110 mg, 0.17 mmol, 1.0 eq) in toluene (2.0 mL) was added ((6-(difluoromethoxy)-2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)naphthalen-l-yl)ethynyl)triisopropylsilane (97 mg, 0.19 mmol, 1.2 eq), K3PO4 (108 mg, 0.51 mmol, 3.0 eq), rac-Bl-DIME (8 mg, 0.02 mmol, 0.15 eq), Pd2(dba)s (47 mg, 0.05 mmol, 0.3 eq) and H2O (0.4 mL) at room temperature. The reaction mixture was heated under microwave irradiation under nitrogen atmosphere at 120 °C for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (10 mL), dried with Na2SO4, filtered and concentrated to give a crude. The crude was purified by prep- TLC (DCM : MeOH = 15 : 1) to give tert-butyl 3-(5-chloro-7-(3-(difluoromethoxy)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (120 mg, 73.5%) as a yellow solid. LCMS: 958.2 (M+H+).
Step 2: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-chloro-7-(3-(difluoromethoxy)-7- fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline hydrochloride
Figure imgf000324_0001
[00536] To a solution of tert-butyl 3-(5-chloro-7-(3-(difluoromethoxy)-7-fluoro-8- ((triisopropylsilyl) ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (110 mg, 0.11 mmol, 1.0 eq) in DCM (2.0 mL) was added HC1 in dioxane (1.0 mL, 4M in dioxane). Then the reaction mixture was stirred at room temperature for 1 h. The reaction mixture was concentrated under reduced pressure to give 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)- 5-chloro-7-(3-(difluoromethoxy)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline hydrochloride (110 mg, crude) as a yellow solid. LCMS: 858.1 (M+H+). Step 3: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-chloro-7-(3-(difluoromethoxy)-8- ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazoline formate (1:0.6)
Figure imgf000325_0001
F
[00537] To solution of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-chloro-7-(3-
(difluoromethoxy)-7 -fluoro-8-((triisopropylsilyl)ethynyl)naphthalen- 1 -yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline hydrochloride (110 mg, 0.13 mmol, 1.0 eq) in DMF (1.0 mL) was added CsF (494 mg, 3.25 mmol, 25 eq). The reaction mixture was stirred at 40 °C for 30 min. The mixture was diluted by MeOH (1.0 mL) and purified by prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 60%) to give4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-5-chloro-7-(3-(difluoromethoxy)-8-ethynyl-7-fluoronaphthalen-l- yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline formate (1:0.6) (37.9 mg, 45.2% yield for two steps) as white solid. NMR (400 MHz, CD3OD): δ 8.51 (s, 0.6H), 8.11 (dd, J= 9.2, 5.6 Hz, 1H), 7.88 (d, J= 2.4 Hz, 1H), 7.60 - 7.43 (m, 2H), 7.06 (t, J= 73.6 Hz,lH), 5.37 (d, J= 52.8 Hz, 1H), 4.70 - 4.30 (m, 3H), 4.25 - 4.05 (m, 1H), 4.05 - 3.89 (m, 1H), 3.88 - 3.58 (m, 3H), 3.55 - 3.33 (m, 4H), 3.20 - 3.06 (m, 1H), 2.50 - 2.28 (m, 2H), 2.28 - 2.15 (m, 1H), 2.14 - 2.02 (m, 2H), 2.02 - 1.40 (m, 5H). 19F NMR (300 MHz, CD3OD): δ -84.149, -106.822, -118.688, -127.162, -173.784. LCMS: 702.0 (M+H+).
Example 52
5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-
4H-pyrazolo[l,5-a] [l,4]diazepine-2-carboxamide formate
Figure imgf000326_0001
Synthesis scheme
Figure imgf000326_0002
Step 1: Synthesis of 5-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l- yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine- 2-carboxamide
Figure imgf000326_0003
[00538] To a solution of compound 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro- 4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (25 mg, 0.038 mmol, 1.0 eq) in PhMe (2 mL) and H2O (0.4 mL) was added ((2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)naphthalen-l-yl)ethynyl)triisopropylsilane (35 mg, 0.077 mmol, 2.0 eq), K3PO4 (24 mg, 0.12 mmol, 3.0 eq), rac-BI-DIME (2 mg, 0.0058 mmol, 0.15 eq) and Pd2(dba)3 (11 mg, 0.012 mmol, 0.3 eq). The reaction mixture was stirred at 100 °C for 15 h under nitrogen atmosphere. The reaction mixture was poured into water (10 mL). The aqueous layer was extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 60: 1) to give 5-(6,8-difluoro-7-(7- fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (17 mg, 49.3%) as a yellow solid. LCMS: 898.1 (M+H+).
Step 2: Synthesis of 5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N- isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide formate (1:0.3)
Figure imgf000327_0001
[00539] To a solution of 5-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin- 4-yl)-N-isopropyl-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (20 mg, 0.022 mmol, 1.0 eq) in DMF (1 mL) was added CsF (34 mg, 0.22 mmol, 10.0 eq) at room temperature. The reaction was stirred at 40 °C for 1 h. The mixture was fdtered and concentrated to give residue. The residue was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 60%) to give 5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl- 5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide formate (1 :0.3) (5.4 mg, 32.7%) as a white solid. 1H NMR (400 MHz, CDiOD): 3 8.53 (brs, 0.3H), 8.20 - 8.03 (m, 2H), 7.65 (t, J= 7.6 Hz, 1H), 7.57 (d, J= 7.2 Hz, 1H), 7.45 (t, ./= 8,8 Hz, 1H), 6.58 (s, 1H), 5.33 (d, J = 53.6 Hz, 1H), 5.05 (s, 2H), 4.53 - 4.33 (m, 2H), 4.29 - 4.01 (m, 5H), 3.82 (s, 3H), 3.49 - 3.40 (m, 1H) , 3.39 - 3.37 (m, 2H), 3.36 - 3.31 (m, 1H), 3.13 - 3.02 (m, 1H), 2.42 - 2.09 (m, 5H), 2.09 - 1.97 (m, 2H), 1 .97 - 1 .79 (m, 1H), 1 .23 (d, J = 6.4 Hz, 6H). 19F NMR (400 MHz, CD3OD): -106.428, -132.193, -137.810, -173.542. LCMS: 742.0 (M+H+).
Example 53
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol
Figure imgf000328_0001
Synthesis scheme
Figure imgf000329_0001
Step 1: Synthesis of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline
POCIg
Figure imgf000329_0002
[00540] A solution of 6,8-difluoro-5-methoxyquinazoline-2,4-diol (500 mg, 2.19 mmol, 1.0 eq) and DIEA (592 mg, 4.58 mmol, 2.1 eq) in POCl3 (8 mL) was stirred at 110 °C for 2 h under nitrogen atmosphere. The mixture was concentrated to give compound 2,4-dichloro-6,8-difluoro- 5-methoxyquinazoline (crude) as a brown solid, which was used directly for the next step without any further purification.
Step 2: Synthesis of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000330_0001
[00541] To a solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (2.33 g, 8.8 mmol, 1.0 eq) in DCM (25 mL) was added DIEA (9.9 g, 76.56 mmol, 8.7 eq) and tert-butyl 3,8- diazabicyclo [3.2.1] octane-8-carboxylate (2.43 g, 11.44 mmol, 1.3 eq) at -40 °C. The reaction mixture was stirred at room temperature overnight under nitrogen atmosphere. The mixture was concentrated to give a residue. The residue was partitioned between DCM (10 mL) and water (20 mL). The layers were separated. The aqueous layer was extracted with DCM (10 mL x 3). The combined organic layers were washed brine (10 mL), dried over NazSO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 5: 1) to give compound tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (860 mg, 22.2% for two steps) as a yellow solid. LCMS: m/z 441.1 (M+H+).
Step 3: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-chloro-6,8-difluoroquinazolin-5- ol
Figure imgf000330_0002
[00542] A solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (1 g, 2.27 mmol, 1.0 eq) in DCM (3.5 mL) was added BBrs (11.4 g, 45.36 mmol, 20.0 eq) at -60 °C. The reaction mixture was stirred at room temperature overnight. The mixture was concentrated to give crude. The crude was adjusted to pH ~ 8 with solid NaHCCh, which was used directly for the next step without any further purification. LCMS: m/z 327.1 (M+H+).
Step 4: Synthesis of tert-butyl 3-(2-chloro-6,8-difluoro-5-hydroxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000331_0001
[00543] To a solution of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-chloro-6,8- difluoroquinazolin-5-ol (738 mg, 2.26 mmol, 1.0 eq) in THF/H2O (1/1, 80 mL) was added (BOC)2O (592 mg, 2.71 mmol, 1.2 eq), NaHCOs (570 mg, 6.78 mmol, 3.0 eq) at 0 °C. The reaction mixture was stirred at room temperature overnight. The reaction was quenched with H2O (20 mL), extracted with EtOAc (30 mL x 3). The combined organic layers were washed with brine (20 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 3: 1) to give compound tert-butyl 3-(2-chloro-6,8-difluoro-5-hydroxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (900 mg, 93.4% for two steps) as a yellow solid. LCMS: m/z 427.1 (M+H+).
Step 5: Synthesis of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-hydroxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000331_0002
[00544] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-hydroxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (450 mg, 1.05 mmol, 1.0 eq) in THF (5 mL) was added LDA (2M in THF, 3.2 mL, 6.32 mmol, 6.0 eq) at - 65 °C under N2 atmosphere. After 30 min, the reaction mixture was added l,2-dibromo-l,l,2,2-tetrafluoroethane (2.19 g, 8.43 mmol, 8.0 eq). The reaction mixture was stirred at -65 °C for 3 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 5: 1) to give tert-butyl 3-(7-bromo- 2-chloro-6,8-difluoro-5-hydroxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
(180 mg, 33.9%) as a yellow soild. LCMS: m/z 505.1, 507.0 (M+H+).
Step 6: Synthesis of tert-butyl 3-(7-bromo-2-chloro-5-(difluoromethoxy)-6,8- difluoroquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000332_0001
[00545] To a solution of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-hydroxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (220 mg, 0.44 mmol, 1.0 eq) in ACN/H2O (1/1, 4.4 mL) was added KOH (488 mg, 8.7 mmol, 20.0 eq), diethyl
(bromodifluoromethyl)phosphonate (235 mg, 0.87 mmol, 2.0 eq). The reaction mixture was stirred at room temperature for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 3: 1) to give tert-butyl 3-(7-bromo-2-chloro- 5-(difluoromethoxy)-6,8-difluoroquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (190 mg, 77.3%) as a yellow soild. LCMS: m/z 555.0, 557.0 (M+H+).
Step 7: Synthesis of tert-butyl 3-(7-bromo-5-(difluoromethoxy)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000332_0002
[00546] To a solution of tert-butyl 3-(7-bromo-2-chloro-5-(difluoromethoxy)-6,8- difluoroquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 0.090 mmol, 1.0 eq) and ((2A,7a5)-2-fluorotetrahydro-177-pyrrolizin-7a(577)-yl) methanol (17.2 mg, 0.108 mmol, 1.2 eq) in DMF/THF (1/1, 2.0 mL) was added DABCO (10 mg, 0.090 mmol, 1.0 eq), Cs2CO3 (87.9 mg, 0.27 mmol, 3.0 eq). The reaction mixture was stirred at room temperature overnight under N2 atmosphere. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SC>4 and concentrated to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1) to give tert-butyl 3-(7-bromo-5-(difluoromethoxy)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (28 mg, 44.4%) as a yellow soild. LCMS: m/z 678.1, 680.1 (M+H+).
Step 8: Synthesis of tert-butyl 3-(5-(difluoromethoxy)-6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000333_0001
[00547] To a solution of tert-butyl 3-(7-bromo-5-(difluoromethoxy)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (28 mg, 0.041 mmol, 1.0 eq) in toluene/H2O (5/1, 1.2 mL) was added ((2-fluoro-6-(methoxymethoxy)-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl) naphthalen-l-yl) ethynyl) triisopropylsilane (25.1 mg, 0.049 mmol, 1.2 eq), cataCxium A Pd G3 (5.8 mg, 0.008 mmol, 0.2 eq) and CS2CO3 (40.1 mg, 0.123 mmol, 3.0 eq). The sealed vial was irradiated in the microwave at 120 °C for 1.5 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep- TLC (DCM: MeOH = 10: 1) to give tert-butyl 3-(5-(difluoromethoxy)-6,8-difluoro-7-(7-fluoro- 3-(methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (21 mg, 51.2%) as a yellow soild. LCMS: m/z 984.1 (M+H+).
Step 9: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7- yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000334_0001
[00548] To a solution of tert-butyl 3-(5-(difluoromethoxy)-6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (21 mg, 0.021 mmol, 1.0 eq) in ACN (1.5 mL) was added HCl/dioxane (0.3 mL) at 0 °C. The reaction mixture was stirred at room temperature for 1 h. Then the reaction mixture was concentrated in vacuo to afford 4-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (crude) as a yellow solid, which was used directly for the next step without any further purification. LCMS: m/z 840.1 (M+H+).
Step 10: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7- yl)-5-ethynyl-6-fluoronaphthalen-2-ol
Figure imgf000335_0001
[00549] To a solution of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-ol (crude) in DMF (1 mL) was added CsF (47.8 mg, 0.315 mmol, 15.0 eq). The reaction mixture was stirred at 40 °C for 2 h. Then the reaction mixture was filtered and the filtrate was purified by Prep-HPLC (0.1% FA) to afford 4-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol (4 mg, 0.005 mmol, with 0.6 FA salt, 27.4% yield for two steps) as a white solid.1H NMR (400 MHz, DMSO-^): δ 10.27 (s, 1H), 8.23 (s, 0.6H), 8.01 (dd, J = 9.2, 6.0 Hz, 1H), 7.57 - 7.33 (m, 2H), 7.21 (s, 1H), 6.89 (t, J = 76.0 Hz, 1H), 5.28 (d, 52.0 Hz, 1H), 4.19
- 3.82 (m, 4H), 3.60-3.30 (m, 7H), 3.14 - 2.97 (m, 4H), 2.83 (s, 1H), 2.14 - 1.70 (m, 6H), 1.58 (s, 2H). LCMS: m/z 684.2 (M+H+).
Example 54
4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7-fluoro naphthalen-l-yl)-6,8-difluoro-2- (((S,Z)-2-(fluoromethylene) tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazoline
Figure imgf000335_0002
Synthetic scheme:
Figure imgf000336_0001
Step 1: Synthesis of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-
3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000336_0002
[00550] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (500 mg, 1.13 mmol, 1.0 eq) in THF (7 mL) under N2 atmosphere was added LDA (3.4 mL, 6.80 mmol, 6.0 eq) at -65 °C under N2 atmosphere and the reaction mixture was stirred for 40 minutes at -65 °C. Then the 1 ,2-Dibromotetrafluoroethane (2.36 g, 9.07 mmol, 8.0 eq) was added at -65 °C. The reaction was stirred at -65 °C for 2 h under N2 atmosphere. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over NaiSO4 and concentrated to afford the crude product. The crude product was purified by column chromatography on silica gel (eluted with petroleum ether: EtOAc ::: 20: I) to give tert-butyl 3- (7-bromo-2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (325 mg, 55.1%) as a yellow solid. LCMS: m/z 519.0, 521.1 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((S,Z)-2- (fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000337_0001
[00551] To a solution of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (200 mg, 0.39 mmol, 1.0 eq) in THF (2.0 mL) and DMF (2.0 mL) was added (5)-(2-(fluoromethylene)tetrahydro-l//-pyrrolizin-7a(577)- yl)methanol (79 mg, 0.46 mmol, 1.2 eq), CS2CO3 (414 mg, 1.27 mmol, 3.3 eq) and DABCO (48 mg, 0.42 mmol, 1.1 eq), the reaction mixture was stirred at room temperature for overnight under N2 atmosphere. The mixture was diluted with water (5 mL) and extracted with EtOAc (5 mL x 3). The combined organic phase was washed with water (20 mL) and brine (20 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1) to give tert-butyl 3-(7-bromo-6,8-difluoro-2-(((S,Z)-2- (fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (45 mg, 17.9%) as a yellow solid. LCMS: m/z 654.1, 656.2 (M+H+).
Step 3: Synthesis of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000338_0001
[00552] A solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((S,Z)-2- (fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (45 mg, 0.069 mmol, 1.0 eq) in Toluene (2.25 mL) was took into the microwave tube. Then cataCXium A Pd G3 (0.01 mg, 0.014 mmol, 0.2 eq), CS2CO3 (67 mg, 0.21 mmol, 3.0 eq), ((2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)naphthalen-l-yl)ethynyl)triisopropylsilane (38 mg, 0.08 mmol, 1.2 eq) and water (0.45 mL) were added to the microwave tube. Then the reaction mixture was heated under microwave irradiation at 120 °C for 1.5 hours. Upon completion, the mixture was diluted with water (5 mL) and extracted with EtOAc (5 mL x 3). The combined organic phase was washed with brine (20 mL x 3), dried over Na2SO4 and concentrated to afford the crude product. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1) to give tert-butyl (lR,5S)-3-(6,8-difluoro-7-(7- fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-(fluoromethylene)tetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (27 mg, 43.5%) as a yellow solid. LCMS: m/z 900.2 (M+H+).
Step 4: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline
Figure imgf000338_0002
[00553] To a solution of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (35 mg, 0.039 mmol, 1.0 eq) in ACN (0.35 mL) was added Hydrochloric acid/Dioxane (4 M) (0.32 mL, 1.25 mmol, 32.11 eq) at 0 °C and the reaction mixture was stirred for 1 h under N2 atmosphere. Upon completion, the mixture was concentrated to afford the crude product 4-((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (30 mg, 96.6%) as a yellow solid, which was continue used for the next step without purification. LCMS: m/z 800.1 (M+H+).
Step 5: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7-fluoronaphthalen- l-yl)-6,8-difluoro-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazoline
Figure imgf000339_0001
[00554] To a solution of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (31 mg, 0.039 mmol, 1.0 eq) in DMF (0.9 mL) was added CsF (90 mg, 0.59 mmol, 15.0 eq) at 40 °C under N2 atmosphere. Then the reaction was stirred at 40 °C for 4 h. Upon completion, the mixture was filtered to give a crude. The crude was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 25% to 45%) to give 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2- (((S,Z)-2-(tluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (5 mg, with 0.6 FA salt, 20.5%) as a white solid. 1H NMR (400 MHz, DMSO-^): 3 8.38 - 8.06 (m, 3H), 7.76 - 7.53 (m, 3H), 6.75 (dd, J= 84.0, 8.0 Hz, 1H), 4.20-3.90 (m, 4H), 3.76 (s, 3H), 3.70- 2.95 (m, 9H), 2.56-2.50 (m, 2H), 2.33-225 (m, 1H), 2.00 - 1.57 (m, 8H). LCMS: m/z 644.0 (M+H+). Example 55
5-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N- isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide formate
Figure imgf000340_0001
Synthetic scheme:
Figure imgf000341_0001
Step 1: Synthesis of 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N-isopropyl-
4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000342_0001
[00555] To a solution of N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2- carboxamide (350 mg, 1.7 mmol, 1.0 eq) in DCM (2 mL) was added DIEA (869 mg, 6.7 mmol, 4.0 eq). The reaction mixture was stirred at -20 °C for 1 h under nitrogen atmosphere. Then the reaction was added 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (445 mg, 1.7 mmol, 1.0 eq) in DCM (1 mL). The reaction mixture was stirred at -20 °C for 1 h under nitrogen atmosphere. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phases were washed with brine (10 mL), dried with Na2SO4, filtered and concentrated to give a crude. The crude product was purified by prep-TLC (DCM : MeOH = 15 : 1) to give 5-(2-chloro- 6,8-difluoro-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine- 2-carboxamide (480 mg, 65.2% yield of two steps) as a yellow solid. rH NMR (400 MHz, CDCl3): <)’ 7.43 (t, J= 9.2 Hz, 1H), 6.68 - 6.62 (m, 2H), 4.84 (s, 2H), 4.47 (t, J= 5.2 Hz, 2H), 4.35 - 4.17 (m, 1H), 4.08 (t, J= 5.2 Hz, 2H), 3.88 (s, 3H), 1.25 (d, J= 6.4 Hz, 6H). LCMS: 437.1 (M+H+).
Step 2: Synthesis of 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxamide
Figure imgf000342_0002
[00556] To a solution of 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N-isopropyl- 4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (480 mg, 1.1 mmol, 1.0 eq) in dioxane (10 mL) was added CS2CO3 (1 .07 g, 3.3 mmol, 3.0 eq), ((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methanol (263 mg, 1.7 mmol, 1.5 eq) and S-Phos Pd G4 (87 mg, 0.11 mmol, 0.1 eq). The reaction mixture was stirred at 100 °C for 12 h under nitrogen atmosphere. The mixture was quenched by the addition of water (20 mL) and then extracted with EtOAc (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over Na2SO4 and concentrated to give crude. The residue was purified by silica gel column chromatography (DCM : MEOH = 30 : 1) to give 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxamide (560 mg, 90.1%) as a yellow solid. 1H N R (400 MHz, CDCl3): δ 7.32 (t, J= 10.0 Hz, 1H), 6.69 - 6.62 (m, 2H), 5.34 (d, J= 52.4 Hz, 1H), 4.85 - 4.75 (m, 2H), 4.46 - 4.42 (m, 2H), 4.40 - 4.33 (m, 1H), 4.29 - 4.23 (m, 1H), 4.03 - 3.94 (m 2H), 3.81 (s, 3H),
3.48 (s, 1H), 3.37 - 3.27 (m, 1H), 3.05 (s, 1H), 2.45 - 2.15 (m, 3H), 2.10 - 1.92 (m, 3H), 1.81 -
1.48 (m, 2H), 1.25 (d, J= 6.4 Hz, 6H). LCMS: 560.2 (M+H+).
Step 3: Synthesis of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000343_0001
[00557] To a solution of 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxamide (350 mg, 0.63 mmol, 1.0 eq) in THF (4 mL) was added LDA (2M) (1.9 mL 3.8 mmol, 6.0 eq, 2.0M in hexane/THF). Then the reaction mixture was stirred at -65 °C for 30 min. Then the reaction mixture was added l,2-dibromo-l,l,2,2-tetrafluoroethane (982 mg, 3.78 mmol, 6.0 eq). The crude was partitioned between EtOAc (10 mL) and water (10 mL). The layers were separated. The aqueous layer was extracted with EtOAc (10 mL x 3). The combined organic layers were washed with brine (10 mL), dried over MgSO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM : MeOH = 40 : 1) to give 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine- 2 -carboxamide (90 mg, 22.5%) as a yellow solid. LCMS: 637.9, 640.0 (M+H+).
Step 4: Synthesis of 5-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7 a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N -isopropyl-4,5,6,7 - tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000344_0001
[00558] To a solution of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)- 5 -methoxyquinazolin-4-yl)-N -isopropyl-4, 5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (50 mg, 0.08 mmol, 1.0 eq) in toluene (2.0 mL) and H2O (0.4 mL) was added K3PO4 (51 mg 0.24 mmol, 3.0 eq), rac-BI-DIME (4 mg, 0.01 mmol, 0.15 eq), Pd2(dba)3 (22 mg, 0.024 mmol, 0.3 eq) and ((2-fluoro-6-(methoxymethoxy)-8- (4,4,5,5-tetramethyl- 1,3,2 -dioxaborolan-2 -yl)naphthalen- 1 -yl)ethynyl)triisopropylsilane (62 mg, 0.12 mmol, 1.5 eq) under nitrogen atmosphere. The reaction mixture was heated under micro wave irradiation under nitrogen atmosphere at 120 °C for 1 h. The mixture was diluted with water (5 mL) and extracted with EtOAc (5 mL x 3). The organic phases were washed with brine (5 mL), dried with Na2SO4 filtered and concentrated to give a crude. The crude was purified by prep-TLC (DCM : MeOH = 15 : 1) to give 5-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen- 1 -yl)-2-(((2R,7aS)-2-fluorotetrahydro- 1 H-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxamide (45 mg, 60.8%) as a yellow solid. LCMS: 944.1 (M+H+). Step 5: Synthesis of 5-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4, 5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000345_0001
[00559] To a solution of 5-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-
((triisopropylsilyl) ethynyl)naphthalen- 1 -yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxamide (45 mg, 0.05 mmol, 1.0 eq) in DCM (1.0 mL) was added HC1 in dioxane (0.5 mL, 4 M in dioxane) at room temperature. Then the reaction mixture was stirred at room temperature for 2 h. The reaction mixture was concentrated under reduced pressure to give 5-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N- isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (40 mg, crude) as a white soild. LCMS: 900.1 (M+H+).
Step 6: Synthesis of 5-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide formate
Figure imgf000346_0001
[00560] To a solution of 5-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8- ((triisopropylsilyl)ethynyl)naphthalen- 1 -yl)-2-(((2R,7aS)-2-fluorotetrahydro- 1 H-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxamide (40 mg, 0.04 mmol, 1.0 eq) in DMF (1 mL) was added CsF (152 mg, 1.0 mmol, 25.0 eq). The reaction mixture was stirred at room temperature for 3 h. The reaction mixture was filtered and diluted by MeOH (1.0 mL). The mixture was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 60%) to give 5-(7-(8-ethynyl-7-fluoro-3- hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-N-isopropyl-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine- 2 -carboxamide formate (1:0.2) (10.0 mg, 28.2% yield for two steps) as a white solid. 'H NMR (400 MHz, CD3OD): δ 8.54 (brs, 0.2H), 7.91 - 7.80 (m, 1H), 7.40 - 7.28 (m, 2H), 7.15 (d, J= 2.0 Hz, 1H), 6.63 (s, 1H), 5.34 (d, J= 53.6 Hz, 1H), 4.92 (s, 2H), 4.58 - 4.42 (m 2H), 4.40 - 4.13 (m, 4H), 4.09 - 3.98 (m, 1H), 3.86 (s, 3H), 3.42 - 3.31 (m, 4H), 3.15 - 3.00 (m, 1H), 2.44 - 2.24 (m, 3H), 2.20 - 2.10 (m, 2H), 1.99 - 1.86 (m, 1H), 1.25 (d, J= 6.4 Hz, 6H). 19F NMR (400 MHz, CD3OD): δ -111.255, -131.740, -136.720, -173.697. LCMS: 744.4 (M+H+).
Example 56
5-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8- tetrahydro-4H-pyr azolo [ 1 ,5-a] [ 1 ,4] diazepine-2-carboxamide formate
Figure imgf000347_0001
Synthetic scheme:
Figure imgf000348_0001
Step 1: Synthesis of tert-butyl 2-(bis(4-methoxybenzyl)carbamoyl)-7,8-dihydro-4H- pyrazolo[l,5-a][l,4]diazepine-5(6H)-carboxylate
Figure imgf000349_0001
[00561] To a solution of 5-(tert-butoxycarbonyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine-2-carboxylic acid (2.0 g, 7.11 mmol, 1.0 eq) in THF (12.0 mL) was added bis(4-methoxybenzyl)amine (1.83 g, 7.11 mmol, 1.0 eq), HATU (5.40 g, 14.2 mmol, 2.0 eq) and TEA (4.32 g, 42.7 mmol, 6.0 eq). Then the mixture was stirred at room temperature for 2 h. The mixture was diluted with water (30 mL) and extracted with EtOAc (20 mL x 3). The combined organic phases were washed with brine (30 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by flash silica gel column chromatography (eluted with EtOAc in Petroleum ether = 5%) to give tert-butyl 2-(bis(4-methoxybenzyl)carbamoyl)-7,8-dihydro-4H- pyrazolo[l,5-a][l,4]diazepine-5(6H)-carboxylate (3.0 g, 81.1%) as a yellow solid. NMR (300 MHz, CDCl3): 3 7.25 - 7.13 (m, 4H), 6.90 - 6.82 (m, 4H), 6.59 (s, 1H), 4.97 - 4.71 (m, 2H), 4.62 - 4.31 (m, 6H), 3.81 (s, 3H), 3.80 (s, 3H), 3.70 (s, 2H), 1.96 - 1.85 (m, 2H), 1.38 (s, 9H). LCMS: 521.2 (M+H+).
Step 2: Synthesis of N,N-bis(4-methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a] [l,4]diazepine-2-carboxamide
[00562] To a solution of tert-butyl 2-(bis(4-methoxybenzyl)carbamoyl)-7,8-dihydro-4H- pyrazolo[l,5-a][l,4]diazepine-5(6H)-carboxylate (3.0 g, 5.76 mmol, 1.0 eq) in DCM (18.0 mL) was added HC1 (4M in Dioxane) (5.0 mL). The mixture was stirred at room temperature for 2 h. The reaction mixture was concentrated to give N,N-bis(4-methoxybenzyl)-5,6,7,8-tetrahydro- 4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (2.4 g, crude) as a white solid. LCMS: 421.1 (M+H+).
Step 3: Synthesis of 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N,N-bis(4- methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000350_0001
[00563] To a solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (1.51 g, 5.71 mmol, 1.0 eq) and DIEA (3.69 g, 28.5 mmol, 5.0 eq) in DCM (10.0 mL) was added dropwise a solution of N,N-bis(4-methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2- carboxamide (2.4 g, crude) in DCM (5.0 mL) at -20 °C under N2. The mixture was stirred at - 20 °C for 2 h. The mixture was diluted with water (30 mL) and extracted with DCM (30 mL x 3). The combined organic phases were washed with brine (40 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel chromatography (DCM: MeOH = 80: 1) to give 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N,N-bis(4- methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (2.89 g, 77.3% for two steps) as a white solid. LCMS: 649.0 (M+H+).
Step 4: Synthesis of 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000350_0002
[00564] To a solution of 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N,N-bis(4- methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (520 mg, 0.80 mmol, 1.0 eq) in 1,4-Dioxane (5.0 mL) was added ((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methanol (191 mg, 1.20 mmol, 1.5 eq), CS2CO3 (783 mg, 2.40 mmol, 3.0 eq) and S-Phos Pd G4 (63.5 mg, 0.08 mmol, 0.1 eq). Then the reaction mixture was stirred at 100 °C for 12 h. The mixture was diluted with water (15 mL) and extracted with EtOAc (20 mL x 3). The combined organic phases were washed with brine (15 mL), dried over Na2SO4, filtered and concentrated under reduced pressure to give a residue, which was purified by silica gel chromatography (DCM: MeOH = 50: 1) to give 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)- 5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (500 mg, 80.8%) as a yellow solid. 1H NMR (300 MHz, CDCl3): δ 7.32 - 7.26 (m, 1H), 7.23 - 7.14 (m, 4H), 6.90 - 6.81 (m, 4H), 6.61 (s, 1H), 5.28 (d, J= 53.1 Hz, 1H), 4.97 - 4.74 (m, 4H), 4.52 (s, 2H), 4.43 - 4.31 (m, 2H), 4.30 - 4.04 (m, 2H), 3.94 - 3.84 (m, 2H), 3.81 (s, 3H), 3.80 (s, 3H), 3.68 - 3.58 (m, 3H), 3.39 - 2.89 (m, 4H), 2.33 - 1.89 (m, 8H). LCMS: 772.2 (M+H+).
Step 5: Synthesis of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)- 5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000351_0001
[00565] To a solution of 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-5,6,7,8-tetrahydro- 4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (260 mg, 0.337 mmol, 1.0 eq) in THF (5.0 mb) was added dropwise u-BuLi 2.5M in THF (0.2 mb, 0.506 mmol, 1.5 eq) at -78 °C. The reaction mixture was stirred at -78 °C for 1 h. Then l,2-dibromo-l,l,2,2-tetrafluoroethane (96 mg, 0.371 mmol, 1.1 eq) was added and the reaction mixture was stirred at -78 °C for 1.5 h. The mixture was diluted with water (15 mb) and extracted with EtOAc (10 mL x 3). The combined organic phases were washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel chromatography (eluted with DCM: MeOH = 10: 1) to give 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-5,6,7,8-tetrahydro-4H- pyrazolo[l ,5-a][l ,4]diazepine-2-carboxamide (200 mg, 69 7%) as a yellow solid. LCMS: 850.1, 852.1 (M+H+).
Step 6: Synthesis of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000352_0001
[00566] A solution of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (120 mg, 0.141 mmol, 1.0 eq) in TFA (0.5 mL) was stirred at 50 °C for 12 h. The mixture was quenched by the addition of saturated aqueous Na2CO3 solution (5 mL) and then extracted with DCM: MeOH = 10: 1 (10 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by silica gel chromatography (eluted with DCM: MeOH = 10: 1) to give 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (70 mg, 81.3%) as a white solid. LCMS: 610.2, 612.2 (M +H+).
Step 7: Synthesis of 5-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a] [l,4]diazepine-2-carboxamide
Figure imgf000353_0001
[00567] To a solution of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine-2-carboxamide (30 mg, 0.049 mmol, 1.0 eq) and ((2-fluoro-6- (methoxymethoxy )- 8 -(4, 4, 5 , 5 -tetramethyl - 1 , 3 , 2 - di oxab orol an-2-y l)naphthal en- 1 - yl)ethynyl)triisopropylsilane (28 mg, 0.054 mmol, 1.1 eq) in toluene (1.5 mL) and H2O (0.3 mb) was added Pd2(dba)s (7 mg, 0.007 mmol, 0.15 eq), rac-BI-DIME (5 mg, 0.015 mmol, 0.3 eq) and K3PO4 (21 mg, 0.10 mmol, 2.0 eq). The mixture was heated under microwave irradiation at 120 °C for 2.5 h. The reaction mixture was diluted with water (10 mL) and extracted with EtOAc (15 mL x 3). The organic phase was washed with brine (10 mL), dried over Na2SO4, fdtered and concentrated under reduced pressure to give a residue, which was purified by prep-TLC (DCM: MeOH = 10: 1) to give 5-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine-2-carboxamide (21 mg, 46.6%) as a yellow solid. LCMS: 916.3 (M+H+).
Step 8: Synthesis of 5-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lTT-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a] [l,4]diazepine-2-carboxamide
Figure imgf000354_0001
[00568] To a solution of 5-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l ,4]diazepine-2-carboxamide (20 mg, 0.022 mmol, 1 .0 eq) in DCM (2 mL) was added HC1 (4M in Dioxane) (0.5 mL). The mixture was stirred at room temperature for 2 h. The reaction mixture was concentrated under reduced pressure to give 5-(6,8-difluoro-7-(7-fluoro-3-hydroxy- 8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine-2-carboxamide (19 mg, crude) as a white solid. LCMS: 872.4 (M+H+).
Step 9: Synthesis of 5-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide formate (1:0.2)
Figure imgf000354_0002
[00569] To a solution of 5-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine-2-carboxamide (19 mg, 0.022 mmol, 1.0 eq) in DMF (3 mL) was added CsF
(16.7 mg, 0.11 mmol, 5.0 eq). The mixture was stirred at 40 °C for 2 h. The mixture was concentrated to give a residue. The residue was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 40%) to give 5-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide formate (1 :0.2) (7 mg, 44.2% for two steps) as a white solid. 1H NMR (400 MHz, CD3OD): 3 8.53 (s, 0.2H), 7.86 (dd, J = 9.2, 6.0 Hz, 1H), 7.36 - 7.29 (m, 2H), 7.16 - 7.12 (m, 1H), 6.75 - 6.70 (m, 1H), 5.36 (d, J= 53.6 Hz, 1H), 5.05 (s, 2H), 4.52 - 4.36 (m, 2H), 4.29 - 4.19 (m, 2H), 4.16 - 4.02 (m, 2H), 3.82 (s, 3H), 3.54 - 3.34 (m, 4H), 3.17 - 3.08 (m, 1H), 2.40 - 1.95 (m, 8H) 19F NMR (400 MHz, CD3OD): -111.304, -132.388, -137.697, -173.621. LCMS: 715.9 (M+H+).
Example 57
3-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5- chloro-4-(trifluoromethyl)aniline formate
Figure imgf000355_0001
Synthetic scheme
Figure imgf000356_0001
Step 1: Synthesis of tert-butyl 3-(7-(5-amino-3-chloro-2-(trifluoromethyl)phenyl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000356_0002
[00570] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (110 mg, 0.17 mmol, 1.0 eq) in dioxane (5 mL) and H2O (1 mL) was added 3- chloro-5-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-4-(trifluoromethyl)aniline (165 mg, 0.51 mmol, 3.0 eq), CsF (78 mg, 0.51 mmol, 3.0 eq) and Pd(dtbpf)C12 (22 mg, 0.03 mmol, 0.2 eq). The reaction mixture was stirred at 90 °C for 15 h under nitrogen atmosphere. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (10 mL), dried with ISfeSCL, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (DCM: MeOH = 15: 1) to give tert butyl ( 1 R,5S)-3 -(7-(5-amino-3 -chloro-2-(trifluoromethyl)phenyl)-6,8 -difluoro-2-(((2R,7aS)-2- fluorotetrahydro- 1 H-pyrrolizin-7 a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3 ,8- diazabicyclo[3.2.1]octane-8-carboxylate (70 mg, 54.0%) as a yellow solid. LCMS: 757.4 (M+H+).
Step 2: Synthesis of 3-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-chloro-4- (trifluoromethyl)aniline formate (1:0.5)
Figure imgf000357_0001
[00571] To a solution of tert-butyl 3-(7-(5-amino-3-chloro-2-(trifluoromethyl)phenyl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (70 mg, 0.09 mmol, 1.0 eq) in DCM (3.0 mL) was added HC1 in dioxane (1.5 mL). Then the reaction mixture was stirred at room temperature for 1 h. The mixture was concentrated and purified by prep-HPLC (acetonitrile with 0.1% FA in water, 5% to 60%) to give 3-(4-(3,8-diazabicyclo[3.2.1]octan-3- yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-5-chloro-4-(trifluoromethyl)aniline formate (1:0.5) (29.6 mg, 48.8%) as a white solid. 1H NMR (300 MHz, CD3OD): δ 8.49 (brs, 0.5H), 6.91 (s, 1H), 6.44 (d, J= 2.1, 1H), 5.41 (d, 52.5 Hz, 1H), 4.47 - 4.31 (m, 3H), 4.27 - 4.14 (m, 1H), 4.02 - 3.90 (m, 2H),
3.87 (s, 3H), 3.66-3.45 (m, 5H), 3.26 - 3.16 (m, 1H), 2.56 - 2.32 (m, 2H), 2.31 - 2.21 (m, 1H), 2.20 - 2.05 (m, 3H), 2.05 - 1.93 (m, 4H). 19F NMR (300 MHz, CD3OD): δ -56.412, -133.325, - 138.457, -173.896. LCMS: 656.9 (M+H+).
Example 58
N-((l-(azetidin-l-yl)cyclobiJtyl)methyl)-7-(8-ethynyl-7-fhioronaphthalen-l-yl)-6,8-difluoro-
2-(((2R,7aS)-2-fhiorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin- 4-amine
Figure imgf000358_0001
Step 1: Synthesis of l-(azetidin-l-yl)cyclobutane-l-carbonitrile
Figure imgf000358_0002
[00572] To a solution of azetidine (4.1 g, 71.28 mmol, 5.0 eq) in Acetic acid (23 mL) at 0 °C under argon, cyclobutanone (1.0 g, 14.27 mmol, 1.0 eq) and TMSCN (3.5 g, 35.28 mmol, 2.5 eq) was added dropwise. The mixture was stirred at 25 °C for 12 h, diluted with DCM (100 mL) and added 32% sodium hydroxide solution to adjust pH to 9 (~35 mL). The mixture was extracted with DCM (100 mL x 2). The combined organic phases were dried over sodium sulfate, filtered and carefully evaporated. The residue was purified by silica gel column chromatography (petroleum ether / EtOAc = 10: 1) to give the l-(azetidin-l-yl)cyclobutane-l -carbonitrile (1.3 g, 66.7%) as a yellow liquid. LCMS: m/z 137.2 (M+H+).
Step 2: Synthesis of (l-(azetidin-l-yl)cyclobutyl)methanamine
Figure imgf000359_0001
[00573] The solution of l-(azeti din-1 -yl)cyclobutane-1-carbonitrile (600 mg, 4.40 mmol, 1.0 eq) in THF (18 mL) was cooled to 0 °C under argon and added LAH (1.0 g, 26.35 mmol, 6.0 eq) dropwise. After that, the reaction mixture was stirred for 3 h at 0 C . Then the reaction mixture was quenched with Na2SO4·10H2O (8.5 g, 26.39 mmol, 6.0 eq) and stirred for 1 h at 25 °C . Then the mixture was filtered and the filtrate was concentrated to afford the (1 -(azetidin-1 - yl)cyclobutyl)methanamine (450 mg, crude) as a yellow oil. LCMS: m/z 141.3 (M+H+).
Step 3: Synthesis of N-((l-(azetidin-l-yl)cyclobutyl)methyl)-2-chloro-6,8-difluoro-5- methoxyquinazolin-4-amine
Figure imgf000359_0002
[00574] To a solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (300 mg, 1.13 mmol, 1.0 eq) in DCM (3 mL) cooled to -40 C under argon, was added DIEA (1.44 g, 11.10 mmol, 8.7 eq) and (l-(azetidin-l-yl)cyclobutyl)methanamine (215 mg, 1.53 mmol, 1.2 eq) in DCM (1 mL) dropwise. After that, the reaction mixture was stirred for 2 h at -40 °C . Then the reaction mixture was quenched with water (10 mL) and extracted with DCM (10 mL x 3). The organic layer was washed with brine (20 mL), dried over Na2SO4 and concentrated to give the residue, which was purified by silica gel column chromatography (petroleum ether/EtOAc = 20: 1) to give N-((l-(azetidin-l-yl)cyclobutyl)methyl)-2-chloro-6,8-difluoro-5-methoxyquinazolin-4- amine (300 mg, 71.9%) as a yellow solid. LCMS: m/z 369.1 (M+H+).
Step 4: Synthesis of N-((l-(azetidin-l-yl)cyclobutyl)methyl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-amine
Figure imgf000360_0001
[00575] To a solution of N-((l-(azetidin-l-yl)cyclobutyl)methyl)-2-chloro-6,8-difluoro-5- methoxyquinazolin-4-amine (200 mg, 0.54 mmol, 1.0 eq), ((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl) methanol (173 mg, 1.08 mmol, 2.0 eq) in THF (2.4 mL) and DMF (2.4 mL) was added DABCO (61 mg, 0.54 mmol, 1.0 eq) and CS2CO3 (530 mg, 1.63 mmol, 3.0 eq) at room temperature under N2 atmosphere. The reaction mixture was stirred at room temperature for 36 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with water (30 mL x 3) and brine (30 mL), dried over NaiSO4 and concentrated to give a residue. The crude product was purified by silica gel column chromatography (DCM / MeOH = 10:1) to give N-((l-(azetidin-l-yl)cyclobutyl)methyl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-amine (120 mg, 45.0%) as a yellow solid. LCMS: m/z 492.3 (M+H+).
Step 5: Synthesis of N-((l-(azetidin-l-yl)cyclobutyl)methyl)-7-bromo-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- amine
Figure imgf000360_0002
[00576] To a solution of N-((l-(azetidin-l -yl)cyclobutyl)methyl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-amine (120 mg, 0.24 mmol, 1.0 eq) in THF (4.8 mL) was added LDA (2N, 0.73 mL, 1.46 mmol, 6.0 eq) at -65 C under N2 atmosphere. The reaction mixture was stirred at -65 °C for 0.5 h. Then the mixture was added l,2-dibromo-l,l,2,2-tetrafluoroethane (507 mg, 1.953 mmol, 8.0 eq) and stirred at 25 U for 12 h. The mixture was quenched with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (30 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by silica gel column chromatography (DCM / MeOH = 10: 1) to give N-((l-(azetidin-l-yl)cyclobutyl)methyl)-7- bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-amine (110 mg, 79.0%) as a yellow liquid. LCMS: m/z 570.1, 572.2 (M+H+).
Step 6: Synthesis of N-((l-(azetidin-l-yl)cyclobutyl)methyl)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-amine
Figure imgf000361_0001
[00577] N-((l-(azetidin-l-yl)cyclobutyl)methyl)-7-bromo-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-amine (120 mg, 0.21 mmol, 1.0 eq), ((2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l- yl)ethynyl)triisopropylsilane (143 mg, 0.32 mmol, 1.5 eq), cataCXium A Pd G3 (31 mg, 0.06 mmol, 0.2 eq) and CS2CO3 (206 mg, 0.63 mmol, 3.0 eq) were placed in the reaction bottle. A solution of PhMe / H2O (5: 1, 6.0 mL) was added at room temperature. The mixture was stirred under microwave irradiation at 120 °C for 1.5 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (DCM / MeOH = 10: 1 ) to give N-((l -(azeti din-1 -yl)cyclobutyl)methyl)-6,8-difluoro- 7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-amine (120 mg, 70.0%) as a yellow liquid. LCMS: m/z 816.4 (M+H+).
Step 7: Synthesis of N-((l-(azetidin-l-yl)cyclobutyl)methyl)-7-(8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-amine
Figure imgf000362_0001
[00578] To a solution of N-((l-(azetidin-l-yl)cyclobutyl)methyl)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-amine (100 mg, 0.12 mmol, 1.0 eq) in DMF (1.0 mL) was added CsF (279 mg, 1.84 mmol, 15.0 eq). The reaction mixture was stirred at 40 "C for 12 h. Then the reaction mixture was fdtered and the fdtrate was concentrated to give a residue, which was purified by Prep-HPLC (acetonitrile in water with 0.1% FA, 15% to 36%) to give N- ((1 -(azeti din- 1 -yl)cyclobutyl)methyl)-7-(8-ethynyl-7-fluoronaphthal en-l-yl)-6, 8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-amine (34.2 mg, with 0.27 FA salt, 41.5%) as a white solid. 1H NMR (400 MHz, DMSO-d6): δ 8.70 (s, 1H), 8.27-8.21 (m, 2H), 7.72-7.61 (m, 3H), 5.28 (d, J= 56.0 Hz, 1H), 4.26 (s, 1H), 4.08-4.04 (m, 1H), 4.02 (s, 3H), 4.00-3.90 (m, 1H), 3.59-3.55 (m, 2H), 3.47-3.44 (m, 2H), 3.30-3.20 (m, 3H), 3.20-3.05 (m, 2H), 3.03 (s, 1H), 2.84-2.82 (m, 1H), 2.25-2.13 (m, 3H), 2.05-1.98 (m, 4H) , 1.86- 1.63 (m, 7H). LCMS: m/z 660.3 (M+H+).
Example 59
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2- yl methylcarbamate
Figure imgf000363_0001
Synthetic scheme:
Figure imgf000363_0002
Step 1: tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8-((triisopropylsilyl)ethynyl) naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000364_0001
[00579] tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (150 mg, 0.23 mmol, 1.0 eq), 6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (131 mg, 0.28 mmol, 1.2 eq), Cxium A Pd G3 (34 mg, 0.046 mmol, 0.2 eq) and Cs2CO3 (225 mg, 0.69 mmol, 3.0 eq) were placed in the reaction bottle. A solution of PhMe/H2O (5/1, 9.0 mL) was added at room temperature. The mixture was stirred with microwave reactor at 120 oC for 2 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1) to give tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (130 mg, 62.5%) as a yellow liquid. LCMS: 904.4 ([M+H]+).
Step 2: Synthesis of tert-butyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000364_0002
[00580] To a solution of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-hydroxy-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.11 mmol, 1 .0 eq) in DMF (1 .0 mL) was added CsF (251 mg, 1 .65 mmol, 15.0 eq) The reaction mixture was stirred at 40 °C for 2 h. The mixture was diluted with water (5 mL) and extracted with EtOAc (5 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give tert-butyl (lR,5S)-3-(7-(8-ethynyl-7-fluoro-3- hydroxynaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (110 mg, crude) as a yellow liquid. LCMS: 748.3 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-(8-ethynyl-7-fluoro-3- ((methylcarbamoyl)oxy)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000365_0001
[00581] To a solution of tert-butyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (crude), methylcarbamic chloride (62 mg, 0.66 mmol, 6.0 eq) in DCM (1.1 mL) was added DIEA (128 mg, 0.99 mmol, 9.0 eq) at room temperature under N2 atmosphere. The reaction mixture was stirred at 30 °C for 15 h. The mixture was diluted with water (5 mL) and extracted with DCM (5 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give tert-butyl 3-(7-(8-ethynyl-7-fluoro-3-((methylcarbamoyl)oxy)naphthalen-l-yl)-6,8-difluoro- 2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, crude) as a yellow liquid. LCMS: 805.3 (M+H+).
Step 4: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl- 6-fluoronaphthalen-2-yl methylcarbamate
Figure imgf000366_0001
[00582] To a solution of tert-butyl 3-(7-(8-ethynyl-7-fluoro-3- ((methylcarbamoyl)oxy)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (crude) in ACN (4.4 mL) was added HCl/Dioxane (0.88 mL) at 0 °C under N2 atmosphere. The reaction mixture was stirred at 0 °C for 4 h. Then the reaction mixture was filtered and the filtrate was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 15% to 30%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-yl methyl carb am ate (15.1 mg, with 0.65 FA salt, 18.2% for three steps) as a white solid. 1H NMR (400 MHz, DMSO-^): d 8.26 - 8.15 (m, 2H), 7.98 (d, J= 2.4 Hz, 1H), 7.80-7.70 (m, 1H), 7.64 (t, J = 9.2 Hz, 1H), 5.28 (d, J= 54.8 Hz, 1H), 4.16 (s, 1H), 4.10-3.90 (m, 4H), 3.90-3.60 (m, 8H), 3.15-3.00 (m, 4H), 2.90-2.80 (m, 1H), 2.75-2.65 (m, 3H), 2.12 (s, 1H), 2.05 (s, 1H), 2.00 (s, 1H), 1.90-1.60 (m, 8H). LCMS: 705.3 (M+H+).
Example 60
4-(3,8-diazabicyclo[3.2.1]octaii-3-yl)-5-(difluoromethoxy)-7-(8-ethynyl-7-fluoronaphthalen- l-yl)-6,8-difluoro-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazoline
Figure imgf000366_0002
Synthesis scheme
Figure imgf000367_0001
Step 1 : Synthesis of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-hydroxyquinazolin-4-yl)-
3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000367_0002
[00583] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-hydroxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (450 mg, 1.05 mmol, 1.0 eq) in THF (5 mL) was added
LDA (2 M in THF, 3.2 mL, 6.32 mmol, 6.0 eq) at - 65 °C under N2 atmosphere. After 30 min, the reaction mixture was added l,2-dibromo-l,l,2,2-tetrafluoroethane (2.19 g, 8.43 mmol, 8.0 eq). The reaction mixture was stirred at -65 °C for 3 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 5: 1) to give tert-butyl 3-(7- bromo-2-chloro-6,8-difluoro-5-hydroxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (180 mg, 33.9%) as a yellow solid. LCMS: m/z 505.1, 507.0 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-2-chloro-5-(difluoromethoxy)-6,8- difluoroquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000368_0001
[00584] To a solution of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-hydroxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (220 mg, 0.44 mmol, 1.0 eq) in ACN/H2O (1/1, 4.4 mL) was added KOH (488 mg, 8.7 mmol, 20.0 eq), diethyl (bromodifluoromethyl)phosphonate (235 mg, 0.87 mmol, 2.0 eq). The reaction mixture was stirred at room temperature for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 3: 1) to give tert-butyl 3-(7-bromo-2-chloro- 5-(difluoromethoxy)-6,8-difluoroquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (190 mg, 77.3%) as a yellow soild. LCMS: m/z 557.0 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-bromo-5-(difluoromethoxy)-6,8-difluoro-2-(((S,Z)-2- (fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000369_0001
[00585] To a solution of tert-butyl 3-(7-bromo-2-chloro-5-(difluoromethoxy)-6,8- difluoroquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (190 mg, 0.34 mmol, 1.0 eq) in DMSO (5.0 mL) was added (S)-(2-(fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)- yl)methanol (117 mg, 0.68 mmol, 2.0 eq), KF (40 mg, 0.68 mmol, 2.0 eq). The reaction mixture was stirred at 100 °C for 5 h under N2 atmosphere. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 5: 1) to give tert-butyl 3-(7-bromo-5-(difluoromethoxy)-6,8-difluoro- 2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 25.6%) as a yellow solid. LCMS: m/z 690.1 (M+H+).
Step 4: Synthesis of tert-butyl 3-(5-(difluoromethoxy)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000369_0002
[00586] To a solution of tert-butyl 3-(7-bromo-5-(difluoromethoxy)-6,8-difluoro-2-(((S,Z)-2-
(fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2 l ]octane-8-carboxylate (50 mg, 0.072 mmol, 1 0 eq) in toluene/HiO (5/1, 3.6 mb) was added ((2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl) naphthalen-l-yl) ethynyl) triisopropylsilane (39 mg, 0.086 mmol, 1.2 eq), cataCxium A Pd G3 (10 mg, 0.014 mmol, 0.2 eq), CS2CO3 (70 mg, 0.216 mmol, 3.0 eq). The sealed vial was irradiated under the microwave at 120 °C for 1.5 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1) to give tert-butyl 3-(5-(difluoromethoxy)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (40 mg, 59.7%) as a yellow solid. LCMS: 936.5 (M+H+).
Step 5: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-6,8-difluoro- 7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2- (fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline
Figure imgf000370_0001
[00587] To a solution of tert-butyl 3-(5-(difluoromethoxy)-6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1 ]octane-8-carboxylate (30 mg, 0.032 mmol, 1.0 eq) in ACN (1.5 mL) was added HCl/dioxane (0.3 mL) at 0 °C. The reaction mixture was stirred at room temperature for 2 h. Then the reaction mixture was concentrated in vacuo to afford 4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-5-(difluoromethoxy)-6,8- difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2-
(fluoromethyl ene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline (crude) as a yellow solid, which was used directly for the next step without any further purification. LCMS: m/z 836.3 (M+H+). Step 6: Synthesis of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-7-(8-ethynyl-
7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazoline
Figure imgf000371_0001
[00588] To a solution of 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-6,8- difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((S,Z)-2- (fluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazoline (crude) in DMF (1 mL) was added CsF (75 mg, 0.495 mmol, 15.0 eq). The reaction mixture was stirred at 40 °C for 4 h. Then the reaction mixture was fdtered and the filtrate was purified by Prep-HPLC (0.1% FA) to afford 4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-(difluoromethoxy)-7-(8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-2-(((S,Z)-2-(fluoromethylene)tetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)quinazoline formate (1 : 0.5) (3.6 mg, 0.005 mmol, 16.5% for two steps) as a yellow solid. 1H NMR (300 MHz, DMSO-t/g): 3 8.34 - 8.17 (m, 2H), 7.82 - 7.53 (m, 3H), 7.20- 6.50 (m, 2H), 4.13 - 3.87 (m, 3H), 3.70 (d, J= 14.4 Hz, 2H), 3.47 (m, 3H), 3.10-2.90 (m, 2H), 2.75-2.70 (m, 1H), 2.60-2.20 (m, 6H), 2.06 - 1.51 (m, 9H). LCMS: m/z 680.2 (M+H+).
Example 61
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-((2,2-difluoro-l- (hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-2-amino-7- fluorobenzo[b]thiophene-3-carbonitrile hydrochloride
Figure imgf000371_0002
Synthetic scheme:
Figure imgf000372_0001
Step 1: Synthesis of tert-butyl 3-(7-bromo-2-((2,2-difluoro-l-
(hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000372_0002
[00589] To a solution of tert-butyl 3-(7-bromo-2-((l-(((tert-butyldimethylsilyl)oxy)methyl)- 2,2-difluorocyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.14 mmol, 1.0 eq) in DMF (2.0 mL) was added CsF (425 mg, 2.8 mmol, 20.0 eq). The mixture was stirred at 50 °C for 2.5 h. The mixture was concentrated to give a crude. The crude was purified by Prep-TLC (Petroleum ether: EtOAc = 5 1) to give tert-butyl 3-(7-bromo-2-((2,2-difluoro-l-(hydroxymethyl)cyclopropyl)methoxy)- 6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (70 mg, 82.9%) as a yellow solid. LCMS: 620.8, 622.8 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-2-((2,2-difluoro-l-(hydroxymethyl)cyclopropyl)methoxy)-6,8- difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000373_0001
[00590] To a solution of tert-butyl 3-(7-bromo-2-((2,2-difluoro-l- (hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 0.09 mmol, 1.0 eq) and tert-butyl (3-cyano-7- fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzo[b]thiophen-2-yl)carbamate (45 mg, 0.10 mmol, 1.2 eq) in toluene (1.5 mL) was added CS2CO3 (59 mg, 0.18 mmol, 2.0 eq), (CAS: 2816930-70-6) (6 mg, 0.10 mmol, 0.12 eq) and Pd2(dba)3 (4 mg, 0.004 mmol, 0.05 eq). The mixture was stirred at 100 °C for 4 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and H2O (3 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (3 mL), dried over Na2SO4 and concentrated to a crude. The crude was purified by Prep-TLC (DCM: MeOH ~ 15: 1) to give tert-butyl (3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7-fluorobenzo[b]thiophen-4- yl)-2-((2,2-difluoro-l-(hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin- 4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (35 mg, 43.4%) as a yellow solid. LCMS: 833.2 (M+H+).
Step 3: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-((2,2-difluoro-l- (hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-2-amino-7- fluorobenzo[b]thiophene-3-carbonitrile hydrochloride
Figure imgf000373_0002
[00591] To a solution of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-2-((2,2-difluoro-l-(hydroxymethyl)cyclopropyl)methoxy)-6,8- difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (35 mg, 0.04 mmol, 1 .0 eq) in DCM (1 .0 mL) was added 4 M HCl/Dioxane (0.3 mL, 1 .2 mmol, 30.0 eq) at 0 °C. The reaction mixture was stirred at room temperature for 3 h under N2. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 15% to 50%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-((2,2-difluoro-l- (hydroxymethyl)cyclopropyl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-2-amino-7- fluorobenzo[b]thiophene-3-carbonitrile hydrochloride (1 : 1) (2 mg, 7.5%) as a white solid. XH NMR (300 MHz, CD3OD): 37.30 (dd, J= 8.4, 5.1 Hz, 1H), 7.07 - 7.01 (m, 1H), 4.66 (d, J= 11.7 Hz, 1H), 4.55 (d, J= 11.7 Hz, 1H), 4.32 (d, J= 15.0 Hz, 2H), 3.95 (s, 2H), 3.90 (s, 3H), 3.78 (s, 2H), 3.61 -3.53 (m, 2H), 2.05 - 1.99 (m, 4H), 1.59 - 1.46 (m, 2H). 19F NMR (300 MHz, CD3OD): 3 -118.270, -132.403, -138.153, -138.613 (d, JF-F = 171.9 Hz, JF-H = 3.3 Hz, IF), - 140.359 (d, JF-F = 172.2 Hz, IF). LCMS: 632.8 (M+H+).
Example 62
5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000374_0001
Synthetic scheme:
Figure imgf000375_0001
Step 1: Synthesis of 5-(6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-
5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000375_0002
[00592] A solution of compound 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N,N- bis(4-methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (500 mg, 0 77 mmol, 1.0 eq), compound ((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin- 7a(5H)-yl)methanol (171 mg, 1 .0 mmol, 1 .3 eq), DABCO (86 mg, 0.77 mmol, 1 0 eq) and CS2CO3 (753 mg, 2.31 mmol, 3.0 eq) in THF (3.0 mL) and DMF (3.0 mL) was stirred at room temperature for 15 h under nitrogen atmosphere. The mixture was added H2O (12 mL), extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (5 mL x 3), brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 10: 1) to give compound 5-(6,8-difluoro-2- (((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine-2-carboxamide (480 mg, 79.5%) as a green solid. LCMS: 784.3 (M+H+).
Step 2: Synthesis of 5-(7-bromo-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)- 5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000376_0001
[00593] To a solution of compound 5-(6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4- methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (280 mg, 0.36 mmol, 1.0 eq) in THF (3 mL) was added LDA (0.6 mL, 1.1 mmol, 3.0 eq) at -78 °C under N2 atmosphere. The mixture was stirred at -78 °C for 30 min. The mixture was added 1,2- dibromo-l,l,2,2-tetrafluoroethane (102 mg, 0.39 mmol, 1.1 eq) at the same temperature, and stirred for 2 h. The reaction was quenched with water (5 mL). The mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1) to give compound 5-(7-bromo-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4- methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (190 mg, 61.7%) as a green solid. LCMS: 862.2, 864.2 (M+H+). Step 3: Synthesis of 5-(7-bromo-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H- pyrazolo [1,5-al [1 ,4] diazepine-2-carboxamide
Figure imgf000377_0001
[00594] A solution of compound 5-(7-bromo-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4- methoxybenzyl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (48 mg, 0.06 mmol, 1.0 eq) in TFA (2 mL) was stirred at 50 °C for 15 h under nitrogen atmosphere. The reaction evaporated to dryness. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1) to give compound 5-(7-bromo-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (30 mg, 86.1%) as a white solid. 1H NMR (400 MHz, CDCl3): 36.69 (s, 1H), 5.49 - 5.19 (m, 2H), 4.95 (s, 2H), 4.89 - 4.77 (m, 2H), 4.45 - 4.34 (m, 2H), 4.21 - 4.11 (m, 1H), 3.94 - 3.75 (m, 2H), 3.67 (s, 3H), 3.61 - 3.53 (m, 1H), 3.48 - 3.29 (m, 1H), 3.22 - 3.04 (m, 1H), 2.73 (s, 2H), 2.51 - 1.94 (m, 5H). LCMS: 622.1, 624.1 (M+H+).
Step 4: Synthesis of 5-(6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5- methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2- carboxamide
Figure imgf000377_0002
[00595] To a solution of 5-(7-bromo-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (30 mg, 0.048 mmol, 1.0 eq) and ((2-fluoro-8-(4,4,5, 5-tetram ethyl- 1 ,3 ,2-dioxaborolan-2-yl)naphthalen- 1 - yl)ethynyl)triisopropylsilane (33 mg, 0.072 mmol, 1.5 eq) in PhMe (1.0 mL) and H2O (0.25 mL) was added K3PO4 (20 mg, 0.10 mmol, 2.0 eq), rac-BI-DIME (3 mg, 0.01 mmol, 0.2 eq) and Pd2(dba)3 (6 mg, 0.007 mmol, 0.15 eq). The mixture was heated under microwave irradiation at 120 °C for 1.5 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and H2O (3 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (3 mL), dried over Na2SO4 and concentrated to a crude. The crude was purified by Prep-TLC (DCM: MeOH ~ 15: 1) to give 5-(6,8-difluoro-2- (((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (13 mg, 31.1%) as a white solid. LCMS: 868.3 (M+H+).
Step 5: Synthesis of 5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2S,7aR)-2- fluoro-6-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide
Figure imgf000378_0001
[00596] To a mixture of 5-(6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-7-(7 -fluoro- 8 -((trii sopropyl silyl)ethynyl)naphthalen- 1 -y l)-5 - methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide (10 mg, 0.012 mmol, 1.0 eq) in DMF (1 mL) was added CsF (55 mg, 0.36 mmol, 30.0 eq). The mixture was stirred at 50 °C for 2 h. The fdtrate collected by fdtration was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water) to give 5-(7-(8- ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2S,7aR)-2-fluoro-6-methylenetetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l ,5- a][l,4]diazepine-2-carboxamide (4 mg, 46.8%) as a white solid.
Figure imgf000379_0001
NMR (400 MHz, CD3OD): 3 8.11 (d, J= 7.6 Hz, 2H), 7.65 (t, J= 7.6 Hz, 1H), 7.60 - 7.54 (m, 1H), 7.45 (t, J = 8.8 Hz, 1H), 6.69 (s, 1H), 5.35 (d, J= 54.0 Hz, 1H), 5.10 - 4.98 (m, 4H), 4.58 - 4.38 (m, 2H), 4.20 (s, 2H), 4.14 - 4.01 (m, 2H), 3.94 - 3.83 (m, 1H), 3.80 (s, 3H), 3.72 - 3.64 (m, 1H), 3.58 - 3.36 (m, 3H), 2.82 - 2.72 (m, 2H), 2.45 - 2.13 (m, 4H). 19F NMR (400 MHz, CD3OD): 3 -106.439, -132.135, - 137.785, -173.253. LCMS: 712.2 (M+H+).
Example 63
4-(4-(3,8-diazabicyclo [3.2.1] octan-3-yl)-5-chlor o-6,8-difluor o-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-2-amino-7- fluorobenzo [b]thiophene-3-carbonitrile formate
Figure imgf000379_0002
Synthetic scheme:
Figure imgf000379_0003
Step 1: Synthesis of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-5-chloro-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000380_0001
[00597] To a solution of tert-butyl 3-(7-bromo-5-chloro-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (150 mg, 0.23 mmol, 1.0 eq) in dioxane (6 mL) and H2O (2 mL) was added tert-butyl (3-cyano-7-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)benzo[b]thiophen-2-yl)carbamate (117 mg, 0.28 mmol, 1.2 eq), K3PO4 (99 mg, 0.46 mmol, 3.0 eq) and Pd(dtbpf)C12 (15 mg, 0.02 mmol, 0.1 eq). The reaction mixture was stirred at 90 °C for 4 h under nitrogen atmosphere. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (10 mL), dried over Na2SO4, filtered and concentrated to give a residue. The residue was purified by silica gel column chromatography (DCM / MeOH = 15: 1) to give tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)- 3-cyano-7-fluorobenzo[b]thiophen-4-yl)-5-chloro-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (55 mg, 27.6%) as a yellow solid. LCMS: 858.1 (M+H+).
Step 2: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-5-chloro-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-7-yl)-2-amino- 7-fluorobenzo[b]thiophene-3-carbonitrile formate (1:0.7)
Figure imgf000381_0001
[00598] To a solution of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-5-chloro-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (55 mg, 0.06 mmol, 1.0 eq) in DCM (3.0 mL) was added HC1 in dioxane (1.5 mL, 4M in dioxane). Then the reaction mixture was stirred at room temperature for I h. The mixture was concentrated and purified by prep-HPLC (acetonitrile with 0.1% FA in water, 5% to 60%) to give 4-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-5-chloro-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yr)methoxy)quinazolin-7-yl)-2-amino-7-fluorobenzo[b]thiophene-3- carbonitrile formate (1:0.7) (2.3 mg, 5.4%) as a white solid. NMR (400 MHz, CD3OD): 3 8.55(s, 1H ), 7.33 (dd, J= 8.4, 5.2 Hz, 1H), 7.07 (t, J= 8.8 Hz, 1H), 5.38 (d, J= 53.2 Hz, 1H), 4.78 - 4.50 (m, 1H), 4.48 - 4.28 (m, 2H), 4.18 - 4.00 (m, 1H), 4.00 - 3.85 (m, 1H), 3.85 - 3.74 (m, 1H), 3.74 - 3.58 (m, 2H), 3.56 - 3.37 (m, 3H), 3.24 - 3.08 (m, 1H), 2.55 - 2.17 (m, 3H), 2.17 - 2.04 (m, 2H), 2.03 - 1.92 (m, 1H), 1.92 - 1.62 (m, 3H), 1.60 - 1.40 (m, 1H). 19F NMR (400 MHz, CD3OD): -117.829, -119.858, -127.801, -173.818. LCMS: 658.1 (M+H+).
Example 64
5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-4,5,6,7-tetrahydropyrazolo[l,5- a] pyrazine-2-carboxamide
Figure imgf000381_0002
Synthetic scheme:
Figure imgf000382_0001
Step 1: Synthesis of tert-butyl 2-(bis(4-methoxybenzyl)carbamoyl)-6,7- dihydropyrazolo[l,5-a]pyrazine-5(4H)-carboxylate
Figure imgf000382_0002
[00599] To a solution of compound 5-(tert-butoxycarbonyl)-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxylic acid (250 mg, 0.94 mmol, 1.0 eq) in THF (3.0 m ) was added compound bis(4-methoxybenzyl)amine (241 mg, 0.94 mmol, 1 .0 eq), DTEA (725 mg, 5.6 mmol, 6.0 eq) and HATU (712 mg, 1.9 mmol, 2.0 eq) at room temperature. The reaction was stirred at room temperature for 2 h. The mixture was partitioned between EtOAc (20 mL) and water (30 mL). The layers were separated. The aqueous layer was extracted with EtOAc (20 mL x 2). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 200: 1) to give compound tert-butyl 2-(bis(4- methoxybenzyl)carbamoyl)-6,7-dihydropyrazolo[l,5-a]pyrazine-5(4H)-carboxylate (400 mg, 84.4%) as a yellow solid. 1H NMR (300 MHz, CDCl3): 3 7.24 - 7.11 (m, 4H), 6.94 - 6.80 (m, 4H), 6.53 (s, 1H), 4.85 (s, 2H), 4.65 (s, 2H), 4.55 (s, 2H), 4.22 - 4.10 (m, 2H), 3.87 (t, J= 5.4 Hz, 2H), 3.81 (s, 3H), 3.80 (s, 3H), 1.49 (s, 9H). LCMS: 507.1 (M+H+).
Step 2: Synthesis of N,N-bis(4-methoxybenzyl)-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine- 2-carboxamide
Figure imgf000383_0001
[00600] To a solution of compound tert-butyl 2-(bis(4-methoxybenzyl)carbamoyl)-6,7- dihydropyrazolo[l,5-a]pyrazine-5(4H)-carboxylate (400 mg, 0.79 mmol, 1.0 eq) in DCM (4.0 mL) was added HC1 in dioxane (4 M, 4.0 mL, 15.8 mmol, 20.0 eq). The reaction was stirred at room temperature for 2 h. The mixture was concentrated to give a crude. The crude was diluted with NaHCOs aqueous solution (30 mL) and extracted with EtOAc (20 mL x 3). The combined organic phases were washed with brine (30 mL), dried over Na2SO4 and concentrated to give crude compound A,A-bis(4-methoxybenzyl)-4, 5,6, 7-tetrahydropyrazolo[l,5-a]pyrazine-2- carboxamide (360 mg, crude) as a yellow solid. LCMS: 407.0 (M+H+).
Step 3: Synthesis of 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N,N-bis(4- methoxybenzyl)-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000384_0001
[00601] To a solution of N,N-bis(4-methoxybenzyl)-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxamide (510 mg, 1.3 mmol, 1.0 eq) in DCM (10.0 mL) was added 2,4- dichloro-6,8-difluoro-5-methoxyquinazoline (331 mg, 1.3 mmol, 1.0 eq) and DIEA (1.3 g, 10.0 mmol, 8.0 eq) at -20 °C. The reaction mixture was stirred at room temperature for 2 h under nitrogen atmosphere. The reaction mixture was quenched with water (20 mL) and extracted with
DCM (20 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 150: 1) to give 5-(2-chloro-6,8-difluoro- 5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxamide (400 mg, 50.0% for 2 steps) as a yellow solid. LCMS: 635.0 (M+H+).
Step 4: Synthesis of 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-4,5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000384_0002
[00602] To a solution of 5-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-N,N-bis(4- methoxybenzyl)-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (500 mg, 0.80 mmol, 1.0 eq) in dioxane (16 mL) was added CS2CO3 (782 mg, 2.4 mmol, 3.0 eq), ((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (191 mg, 1.2 mmol, 1.5 eq) and S-Phos Pd G4 (63 mg, 0.08 mmol, 0.1 eq) at room temperature. The reaction mixture was stirred at 100 °C for 3 h under nitrogen atmosphere. The mixture was diluted with water (20 mL) and extracted with EtOAc (20 mL x 3). The organic phase was washed with brine (20 mL), dried with Na2SO4, filtered and concentrated to give a crude. The crude was purified by silica gel column chromatography (DCM: MeOH = 40 : 1) to give 5-(6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4- methoxybenzyl)-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (320 mg, 53.6%) as a yellow solid. LCMS: 758.5 (M+H+).
Step 5: Synthesis of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-4,5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000385_0001
[00603] To a solution of 5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-4,5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (280 mg, 0.37 mmol, 1.0 eq) in THF (3 mb) was added n-BuLi (0.22 mb, 0.56 mmol, 1.5 eq, 2.5 M in hexane/THF) at -78 °C under nitrogen atmosphere. Then the reaction mixture was stirred at -78 °C for 1 h. Then to the mixture was added l,2-dibromo-l, l,2,2-tetrafluoroethane (106 mg, 0.41 mmol, 1.1 eq) in THF (2 mb). Then the reaction mixture was stirred at -78 °C for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (10 mL), dried with Na2SO4, filtered and concentrated to give a crude. The crude was purified by prep-TLC (DCM: MeOH = 15: 1) to give 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-4, 5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (110 mg, 34.9%) as a yellow solid. LCMS: 836.1, 838.1 (M+H+). Step 6: Synthesis of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine- 2-carboxamide
Figure imgf000386_0002
[00604] A solution of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-N,N-bis(4-methoxybenzyl)-4, 5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (110 mg, 0.13 mmol, 1.0 eq) in TFA (1 mL) and stirred at 50 °C for 15 h. The mixture was concentrated to give a crude. The crude was diluted with aqueous sodium bicarbonate solution (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (10 mL), dried with Na2SO4, filtered and concentrated to give a crude. The crude was purified by prep-TLC (DCM : MeOH = 15: 1) to give 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2- carboxamide (60 mg, 76.6%) as a yellow solid. LCMS: 596.1, 598.0 (M+H+).
Step 7: Synthesis of 5-(7-(8-ethynyl-7-fhioronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-4, 5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000386_0001
[00605] To a solution of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-4,5,6,7-tetrahydropyrazolo[l,5- a]pyrazine-2-carboxamide (50 mg, 0.08 mmol, 1.0 eq) in toluene (2 mL) was added ((2-fluoro-8- (4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (54 mg, 0.12 mmol, 1.5 eq), rac BLDIME (3 mg, 0.01 mmol, 0.15 eq), Pd2(dba)i (18 mg, 0.02 mmol, 0.3 eq) and H2O (0.4 mL). The reaction mixture was heated under microwave irradiation under nitrogen atmosphere at 130 °C for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (10 mL), dried with Na2SO4, filtered and concentrated to give a crude. The crude was purified by prep-TLC (DCM : MeOH = 15 : 1) to give 5-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (28 mg, 39.6%) as a yellow solid. LCMS: 842.0 (M+H+).
Step 8: Synthesis of 5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-4, 5,6,7- tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide
Figure imgf000387_0001
[00606] To solution of 5-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l- yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2-carboxamide (28 mg, 0.03 mmol, 1.0 eq) in DMF (1 mL) was added CsF (114 mg, 0.75 mmol, 25.0 eq). The reaction mixture was stirred at room temperature for 3 h. The mixture was diluted by MeOH (1.0 mL) and purified by prep- HPLC (acetonitrile with 0.1% FA in water, 10% to 60%) to give 5-(7-(8-ethynyl-7- fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-4,5,6,7-tetrahydropyrazolo[l,5-a]pyrazine-2- carboxamide (9.3 mg, 40.8%) as a white solid. 1HNMR (300 MHz, CD3OD): δ 8.17 — 8.08 (m, 2H), 7.71 - 7.63 (m, 1H), 7.62 - 7.55 (m, 1H), 7.50 - 7.41 (m, 1H), 6.66 (s, 1H), 5.31 (d, J = 54.0 Hz, 1H), 4.94 (s, 2H), 4.61 - 4.41 (m, 2H), 4.40 - 4.18 (m, 3H), 4.12 - 3.98 (m, 1H), 3.87 (s, 3H), 3.50 (s, 1H), 3.30 - 3.19 (m, 3H), 3.10 - 3.01 (m, 1H), 2.41 - 2.11 (m, 3H), 2.07 - 1.86 (m, 3H). 19F NMR (300 MHz, CD3OD): δ -106.434, -131.589, -136.896, -173.659. LCMS: 686.1 (M+H+).
Example 65
(5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepin-2-yl)methanamine formate
Figure imgf000388_0001
Synthetic scheme:
Figure imgf000389_0001
Step 1: Synthesis of (5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a] [l,4]diazepin-2-yl)methanol
Figure imgf000390_0001
[00607] To a solution of 2-(((tert-butyldimethylsilyl)oxy)methyl)-5-(6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (200 mg, 0.32 mmol, 1.0 eq) in DCM (2 mL) was added HC1 in dioxane (4 M, 1.6 mL, 6.3 mmol, 20.0 eq). The mixture was concentrated, added with NaHCCh aqueous solution (30 mL) and extracted with EtOAc (20 mL x 3). The combined organic phase was washed with brine (30 mL), dried over Na2SO4 and concentrated to give a residue. The residue was purified by Prep-TLC (dichloromethane: methanol = 10 : 1) to give (5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepin-2-yl)methanol (140 mg, 85.4%) as a yellow solid. 1H NMR (400 MHz, CDCL): d 7.34 - 7.28 (m, 1H), 6.24 (brs, 1H), 5.26 (d, J= 53.6 Hz, 1H), 4.86 - 4.74 (m, 2H), 4.61 (s, 2H), 4.30 - 4.19 (m, 2H), 4.09 - 3.99 (m, 1H), 3.96 - 3.83 (m, 3H), 3.79 - 3.72 (m, 3H), 3.41 - 3.15 (m, 3H), 3.04 - 2.91 (m, 1H), 2.39 - 2.08 (m, 5H), 2.05 - 1.79 (m, 4H). LCMS: 519.2 (M+H+).
Step 2: Synthesis of 2-(azidomethyl)-5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-
Figure imgf000390_0002
[00608] To a solution of (5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l ,4]diazepin-2-yl)methanol (140 mg, 0.27 mmol, 1 .0 eq) in dioxane (1 .0 mL) and toluene (1 .0 mL) was added DPPA (372 mg, 1.4 mmol, 5.0 eq) and DBU (206 mg, 1.4 mmol, 5.0 eq) at room temperature. The reaction was stirred at 30 °C for 15 h. The mixture was partitioned between EtOAc (20 mL) and water (30 mL). The layers were separated. The aqueous layer was extracted with EtOAc (20 mL x 2). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (dichloromethane: methanol = 150 : 1) to give 2-(azidomethyl)-5- (6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (133 mg, 90.6%) as a yellow solid. LCMS: 544.3 (M+H+).
Step 3: Synthesis of 2-(azidomethyl)-5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine
Figure imgf000391_0001
[00609] To a solution of 2-(azidomethyl)-5-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine (180 mg, 0.33 mmol, 1.0 eq) in THF (4.0 mL) was added LDA (2.0M, 0.5 mL, 0.99 mmol, 3.0 eq) dropwise at -65 °C. The reaction mixture was stirred at -65 °C for 0.5 h under nitrogen atmosphere. To the mixture was added l,2-dibromo-l,l,2,2-tetrafluoroethane (256 mg, 0.99 mmol, 3.0 eq). The reaction mixture was stirred at -65 °C for 0.5 h under nitrogen atmosphere. The reaction mixture was quenched with ammonium chloride aqueous solution (20 mL) and extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (dichloromethane: methanol = 150: 1) to give 2-(azidomethyl)-5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepine (90 mg, 43.7%) as a yellow solid. LCMS: 621.9, 623.9 (M+H+).
Step 4: Synthesis of (5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepin-2-yl)methanamine
Figure imgf000392_0001
[00610] To a solution of 2-(azidomethyl)-5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine (70 mg, 0.11 mmol, 1.0 eq) in THF (2.5 mL) and H2O (0.5 mL) was added PPhs (59 mg, 0.23 mmol, 2.0 eq). The reaction mixture was stirred at 35 °C for 24 h under nitrogen atmosphere. The reaction mixture was quenched with water (20 mL) and extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (dichloromethane: methanol = 30: 1) to give (5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2- yl)methanamine (30 mg, 44.7%) as a yellow solid. LCMS: 596.3, 598.3 (M+H+).
Step 5: Synthesis of tert-butyl ((5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepin-2-yl)methyl)carbamate
Figure imgf000392_0002
[00611 ] To a solution of (5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepin-2-yl)methanamine (30 mg, 0.05 mmol, 1.0 eq) in DCM (2.0 mL) was added BOC2O (33 mg, 0.15 mmol, 3.0 eq), TEA (25 mg, 0.25 mmol, 5.0 eq) and DMAP (1 mg, 0.008 mmol, 0.16 eq). The reaction mixture was stirred at room temperature for 15 h. The reaction mixture was quenched with water (20 mL) and extracted with ethyl acetate (10 mL x 2). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over JSfeSCL and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 60 : 1) to give tert-butyl ((5-(7-bromo-6,8-difluoro-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2-yl)methyl)carbamate (25 mg, 71.3%) as a yellow solid. LCMS: 696.2, 698.1 (M+H+).
Step 6: Synthesis of tert-butyl ((5-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl) ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepin-2-yl)methyl)carbamate
Figure imgf000393_0001
[00612] To a solution of tert-butyl ((5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H- pyrazolo[l,5-a][l,4]diazepin-2-yl)methyl)carbamate (13 mg, 0.02 mmol, 1.0 eq) in toluene (2 mL) and H2O (0.4 mL) was added ((2-fluoro-8-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)naphthalen-l-yl)ethynyl)triisopropylsilane (17 mg, 0.04 mmol, 2.0 eq), K3PO4 (12 mg, 0.06 mmol, 3.0 eq), rac-BI-DIME (1 mg, 0.003 mmol, 0.15 eq) and Pd2(dba)a (5 mg, 0.006 mmol, 0.3 eq). The mixture was stirred at 100 °C for 15 h under nitrogen atmosphere. The reaction mixture was poured into water (10 mL). The aqueous layer was extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na SC and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 40 : 1) to give tert-butyl ((5-(6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepin-2-yl)methyl)carbamate (10 mg, 56.8%) as a yellow solid. LCMS: 942.0 (M+H+).
Step 7: Synthesis of (5-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l- yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2- yl)methanamine
Figure imgf000394_0001
[00613] A solution of tert-butyl ((5-(6,8-difluoro-7-(7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepin-2-yl)methyl)carbamate (20 mg, 0.02 mmol, 1.0 eq) and HCl in Dioxane (1 mL) in DCM (1 mL) was stirred at room temperature for 1 h. The mixture was concentrated to give a crude (5-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2-yl)methanamine (13 mg, crude) as a yellow solid. LCMS: 842.0 (M+H+).
Step 8: Synthesis of (5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(51T)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2-yl)methanamine formate (1:1)
Figure imgf000395_0001
[00614] To a solution of (5-(6,8-difluoro-7-(7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen- l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin- 4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepin-2-yl)methanamine (13 mg, 0.02 mmol, 1.0 eq) in DMF (1 mb) was added CsF (23 mg, 0.15 mmol, 10.0 eq) at room temperature. The reaction was stirred at 40 °C for 1 h. The mixture was fdtered and concentrated to give a residue. The residue was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 60%) to give (5-(7-(8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l,4]diazepin-2-yl)methanamine formate (1 :1) (1.6 mg, 10.3% for two steps) as a white solid. 1H NMR (400 MHz, CD3OD): 3 8.52 (brs, 1H), 8.12 (d, J= 6.4 Hz, 2H), 7.73 - 7.63 (m, 1H), 7.57 (d, J= 6.8 Hz, 1H), 7.42 - 7.35 (m, 1H), 6.29 (s, 1H), 5.34 (d, J= 54.4 Hz, 1H), 5.18 - 4.94 (m, 3H), 4.55 - 4.34 (m, 2H), 4.29 - 4.19 (m, 2H), 4.03 (s, 3H), 3.78 (s, 3H), 3.57 - 3.37 (m, 3H), 3.16 - 2.97 (m, 1H), 2.47 - 1.79 (m, 8H). 19F NMR (400 MHz, CD3OD): 3 -106.399, - 132.137, -137.619, -173.656. LCMS: 686.2 (M+H+).
Example 66 l-(Isobutyryloxy)ethyl 3-(7-(8-ethynyl-7-fluoro-3-(((l-(isobutyryloxy) ethoxy)carbonyl)oxy) naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000396_0001
Synthesis scheme
Figure imgf000397_0001
Step 1: Synthesis of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8-
((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000398_0001
[00615] A tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (200 mg, 0.31 mmol, 1.0 eq), ((2-fluoro-6-(methoxymethoxy)-8-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)naphthalen-l-yl)ethynyl)triisopropylsilane (191 mg, 0.37 mmol, 1.2 eq), CS2CO3 (304 mg, 0.93 mmol, 3.0 eq) and cataCXium A Pd G3 (45 mg, 0.06 mmol, 0.2 eq) in the microwave tube, Toluene (6.2 mb) and water (1.2 mL) was added. Then the reaction mixture was heated under microwave irradiation at 120 °C for 1.5 hours. Upon completion, the mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 20: 1) to give tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3- (methoxymethoxy)-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (280 mg, 94.9%) as a yellow liquid. LCMS: m/z 948.2 (M+H+)
Step 2: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol
Figure imgf000398_0002
[00616] To a solution of tert-butyl 3-(6,8-difluoro-7-(7-fluoro-3-(methoxymethoxy)-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (80 mg, 0.08 mmol, 1.0 eq) in ACN (1.2 mL) was added Hydrochloric acid/Dioxane (4 M) (0.68 mL, 2.7 mmol, 32.11 eq) at 0 °C and the reaction mixture was stirred for 2 h under N2 atmosphere. Upon completion, the mixture was concentrated to give a residue to afford the crude product 4- (4-(3 , 8-diazabicy clo[3.2.1] octan-3 -yl)-6, 8-difluoro-2-(((2R,7aS)-2-fluorotetrahy dro- 1 H- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-ol (67 mg, 98.8%) as a yellow solid which was continue used for the next step without purification. LCMS: m/z 804.1 (M+H+).
Step 3: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl- 6-fluoronaphthalen-2-ol
Figure imgf000399_0001
[00617] To a solution of 4-(4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahy dro- 1 H-pyrrolizin-7a(5H)-yl)methoxy)-5 -methoxy quinazolin-7 -yl)-6-fluoro-5 - ((triisopropylsilyl)ethynyl)naphthalen-2-ol (68 mg, 0.08 mmol, 1.0 eq) in DMF (2.1 mL) was added CsF (191 mg, 1.26 mmol, 15.0 eq) at 40 °C under N2 atmosphere. Then the reaction was stirred at 40 °C for 4 h. Upon completion, the mixture was filtered and the filtrate was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with water (30 mL) and brine (30 mL x 3), dried over Na2SOi and concentrated to afford the crude product 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazolin-7 -yl)-5-ethynyl-6- fluoronaphthalen-2-ol (48 mg, 88.1%) as a yellow solid, which was continue used for the next step without purification. LCMS: m/z 648.3 (M+H+). Step 4: Synthesis of l-(isobutyryloxy)ethyl 3-(7-(8-ethynyl-7-fluoro-3-(((l- (isobutyryloxy)ethoxy)carbonyl)oxy)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000400_0001
[00618] To a solution of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6- fluoronaphthalen-2-ol (110 mg, 0.17 mmol, 1.0 eq) in DCM (3.0 mL) was added Propanoic acid, 2-Methy 1-, l-[[(4-nitrophenoxy)carbonyl]oxy]ethyl ester (101 mg, 0.34 mmol, 2.0 eq), DIEA(66 mg, 0.51 mmol, 3.0 eq), and the reaction mixture was stirred at room temperature for overnight under N2 atmosphere. Upon completion, the mixture was concentrated to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 10: 1) to give l-(isobutyryloxy)ethyl (lR,5S)-3-(7-(8-ethynyl-7-fluoro-3-(((l-(isobutyryloxy)ethoxy)carbonyl)oxy)naphthalen-l-yl)- 6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 61 .2%) as a yellow liquid. 1H NMR (400 MHz, DMSO) (with 0. 1 FA) 8 8.27 (dd, J 9.2, 6.0 Hz, HI), 8.18 (d, J= 2.4 Hz, 1H), 7.76-7.63 (m, 2H), 6.80-6.70 (m, 2H), 5.41 (d, J= 66.4 Hz, 1H), 4.40-4.20 (m, 2H), 4. 16 (s, 1H), 3.98-3.90 (br, 1H), 3.79 (s, 3H), 3.47 (d, J= 13.2 Hz, 1H), 2.65-2.55 (m, 1 H), 2.0-1.60 (m, 1 OH), 1 66 (s, 1H), 1.55 (d, J == 5.2 Hz, 3H), 1 .47 (d, J - 5.2 Hz, 3H), 1 .10 (dd,J = 6.8, 2.8 Hz, 12H). LCMS: m/z 964.3 (M+H+).
Example 67 l-(Isobutyryloxy)ethyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000401_0001
Step 1: Synthesis of l-(isobutyryloxy)ethyl-3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen- l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000401_0002
[00619] To a solution of 1 -(isobutyryl oxy )ethyl 3-(7-(8-ethynyl-7-fluoro-3-(((l- (isobutyryloxy)ethoxy)carbonyl)oxy)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (70 mg, 0.073 mmol, 1.0 eq) in ACN (1 mL) was added the Ammonium hydroxide (204 mg, 5.8 mmol, 80.0 eq) and the reaction mixture was stirred at room temperature for overnight under N2 atmosphere. Upon completion, the mixture was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 30% to 56%) to give 1- (isobutyryloxy)ethyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (21 mg, with 0.3 FA, 35.6%) as a white solid. rH NMR (400 MHz, DMSO-^): 3 10.22 (s, 1H), 7.99 (t, J = 6.4 Hz, 1H), 7.48 (t, J = 8.4 Hz, 1H), 7.42 (s, 1H), 7.17 (s, 1H), 6.73 (s, 1H), 5.27 (d, J = 53.2 Hz, 1H), 4.31 (d, J= 20.0 Hz, 2H), 4.09-3.95 (m, 3H), 3.77 (s, 3H), 3.43 (d, J= 12.4 Hz, 1H), 3.15-3.05 (m, 2H), 3.01 (s, 1H), 2.83 (s, 1H), 2.67 (s, 1H), 2.33 (s, 1H), 2.12 (s, 1H), 2.03-1.90 (m, 3H), 1.90-1.60 (m, 8H), 1.46 (s, 3H), 1.09 (s, 6H). LCMS: 806.2 ([M+H]+). Example 68
5-(7-(2-amino-3-cyano-7-fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5, 6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide hydrochloride (1:1)
Figure imgf000402_0001
Synthesis scheme
Figure imgf000402_0002
Step 1 Synthesis of tert-butyl (4-(4-(2-carbamoyl-7,8-dihydro-4H-pyrazolo[l,5- a][l,4]diazepin-5(6H)-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-3-cyano-7-fluorobenzo[b]thiophen-2- yl)carbamate
Figure imgf000403_0001
[00620] To a solution of 5-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5- a][l ,4]diazepine-2-carboxamide (40 mg, 0.06 mmol, 1 .0 eq) and tert-butyl (3-cyano-7-fluoro-4- (4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzo[b]thiophen-2-yl)carbamate (29 mg, 0.07 mmol, 1.2 eq) in Dioxane (1.0 mL) and H2O (0.2 mL) was added K3PO4 (29 mg, 0.14 mmol, 2.0 eq), rac-BI-DIME (4 mg, 0.01 mmol, 0.2 eq) and Pd2(dba)3 (9 mg, 0.01 mmol, 0.15 eq). The mixture was stirred at 100 °C for 12 h under N2. The reaction mixture was concentrated to give a crude. The crude was purified by Prep-TLC (DCM / MeOH = 15: 1) to give tert-butyl (4-(4-(2- carbamoyl-7,8-dihydro-4H-pyrazolo[l,5-a][l,4]diazepin-5(6H)-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-3-cyano-7- fluorobenzo[b]thiophen-2-yl)carbamate (15 mg, 27.8%) as a yellow solid. LCMS: 822.0 (M+H+). Step 2 Synthesis of 5-(7-(2-amino-3-cyano-7-fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-5,6,7,8-tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide hydrochloride (1:1)
Figure imgf000403_0002
[00621] To a solution of tert-butyl (4-(4-(2-carbamoyl-7,8-dihydro-4H-pyrazolo[l,5- a][l,4]diazepin-5(6H)-yl)-6,8-difhroro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-7-yl)-3-cyano-7-fluorobenzo[b]thiophen-2-yl)carbamate (15 mg, 0.02 mmol, 1 .0 eq) in DCM (1 .0 mL) was added 4 M HCl/Dioxane (0.3 mL, 1 .2 mmol, 66 0 eq). The reaction mixture was stirred at 40 °C for 2 h under N2. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 5% to 35%) to give 5-(7-(2-amino-3-cyano-7-fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-5,6,7,8- tetrahydro-4H-pyrazolo[l,5-a][l,4]diazepine-2-carboxamide hydrochloride (1 :1) (1.7 mg, 12.3%) as a white solid. 1H NMR (400 MHz, CD3OD): 6 136 - 7.26 (m, 1H), 7.04 (t, J= 8.8 Hz, 1H), 6.72 (s, 1H), 5.48 - 5.12 (m, 1H), 5.03 (s, 2H), 4.57 (s, 1H), 4.47 - 4.33 (m, 2H), 4.31 - 4.16 (m, 2H), 4.15 - 4.00 (m, 2H), 3.85 (s, 3H), 3.47 - 3.36 (m, 1H), 3.12 (s, 1H), 2.47 - 1.83 (m, 10H). 19F NMR (400 MHz, CD3OD): 3 -118.302, -132.791, -138.139, -173.702. LCMS: 722.2 (M+H+).
Example 69
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2- amine hydrochloride
Figure imgf000404_0001
Synthesis scheme
Figure imgf000405_0001
Step 1: Synthesis of tert-butyl 3-(7-(3-((diphenylmethylene)amino)-7-fluoro-8- ((triisopropylsilyl) ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000405_0002
[00622] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (100 mg, 0.16 mmol, 1.0 eq) and N-(6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2- dioxaborolan-2-yl)-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)-l,l-diphenylmethanimine (118 mg, 0.19 mmol, 1.2 eq) in PhMe (1.0 mL) and H2O (0.25 mL) was added KsPO4 (66 mg, 0.31mmol, 2.0 eq), rac-BI-DIME (10 mg, 0.03 mmol, 0.2 eq) and Pd2(dba)3 (21 mg, 0.02 mmol, 0.15 eq). The mixture was heated under microwave irradiation at 120 °C for 1 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and H2O (3 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (3 mL), dried over Na2SO4 and concentrated to a crude. The crude was purified by Prep-TLC (DCM / MeOH = 15 / 1) to give tert-butyl 3-(7-(3- ((diphenylmethylene)amino)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-4-yl)-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (55 mg, 33.0 %) as a white solid. LCMS: 534.3 (M/2+H+).
Step 2: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-amine
Figure imgf000406_0001
[00623] To a solution of tert-butyl 3-(7-(3-((diphenylmethylene)amino)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (100 mg, 0.09 mmol, 1.0 eq) in DCM (2 mL) was added 4 M HCl/Dioxane (0.5 mL, 1.8 mmol, 20.0 eq) at room temperature. The reaction mixture was stirred at room temperature for 2 h. The mixture was concentrated to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8- difhroro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-amine (90 mg, crude) as a yellow solid. LCMS: 803.3 (M+H+).
Step 3: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl- 6-fluoronaphthalen-2-amine hydrochloride (1:1)
Figure imgf000407_0001
[00624] To a solution of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-amine (90 mg, 0.11 mmol, 1.0 eq) in DMF (1.5 mL) was added CsF (510 mg, 3.4 mmol, 30.0 eq). The mixture was stirred at 50 °C for 2 h. The mixture was filtered off and the filtrate was concentrated to give a crude. The crude was purified by Prep- HPLC (ACN with 0.1% FA in water, 15% to 50%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3- yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-amine hydrochloride (1 :1) (15 mg, 21.3 %, two steps yield) as a white solid. 1H NMR (400 MHz, CD3OD): 3 7.81 - 7.71 (m, 1H), 7.31 - 7.26 (m, 1H), 7.18 (s, 1H), 7.05 (s, 1H), 5.36 (d, J= 54.4 Hz, 1H), 4.51 - 4.30 (m, 3H), 4.14 - 4.02 (m, 1H), 3.88 (s, 3H), 3.89 - 3.84 (m, 2H), 3.70 - 3.65 (m, 1H), 3.50 - 3.45 (m, 5H), 3.19 - 3.09 (m, 1H), 2.45 - 1.90 (m, 10H). 19F NMR (400 MHz, CD3OD): 3 -113.071, -132.522, -137.336, -173.884. LCMS: 647.3 (M+H+).
Example 70
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-methyl-5- (trifluoromethyl)pyridin-2-amine formate
Figure imgf000407_0002
Synthetic scheme:
Figure imgf000408_0001
Step 1: Synthesis of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-
7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000408_0002
[00625] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (50 mg, 0.08 mmol, 1.0 eq) in dioxane (1 mL) and H2O (0.2 mL) was added N,N- bis(4-methoxybenzyl)-6-methyl-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)-5- (trifluoromethyl)pyridin-2-amine (63 mg, 0.12 mmol, 1.5 eq), K2CO3 (32 mg, 0.23 mmol, 3.0 eq) and Pd(PPh3)4 (9 mg, 0.01 mmol, 0.1 eq). The reaction mixture was stirred at 100 °C for 5 h under N2. The reaction mixture was partitioned between EtOAc (5 mL) and H2O (3 mL). The layers were separated. The aqueous layer was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (3 mL), dried over Na2SO4 and concentrated to a crude. The crude was purified by Prep-TLC (DCM / MeOH = 15:1) to give tert-butyl (lR,5S)-3-(7-(6- (bis(4-methoxybenzyl)amino)-2-methyl-3-(trifluoromethyl)pyridin-4-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (15 mg, 19.7%) as a white solid. LCMS: 978.3 (M+H+).
Step 2: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-methyl- 5-(trifluoromethyl)pyridin-2-amine formate (1:0.35)
Figure imgf000409_0001
[00626] A solution of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-2-methyl-3- (trifluoromethyl)pyridin-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (15 mg, 0.02 mmol, 1.0 eq) in TFA (2 mb) was stirred at 50 °C for 2 h. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 5% to 35%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-methyl-5- (trifluoromethyl)pyridin-2-amine formate (1:0.35) (1.9 mg, 18.9%) as a white solid. 1H NMR (400 MHz, CD3OD): d 8.55 (brs, 0.35H), 6.31 (s, 1H), 5.34 (d, J= 53.6 Hz, 1H), 4.58 (s, 1H), 4.39 - 4.20 (m, 4H), 4.19 - 4.00 (m, 1H), 3.85 (s, 3H), 3.73 (s, 2H), 3.65 - 3.44 (m, 3H), 3.19 - 3.03 (m, 1H), 2.55 (s, 3H), 2.47 - 1.73 (m, 10H). 19F NMR (400 MHz, CD3OD): 3 -55.814, - 133.384, -139.653, -173.705. LCMS: 638.2 (M+H+).
Example 71 l-(Isobutyryloxy)ethyl 3-(7-(3-acetoxy-8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-
(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000410_0001
Step 1: Synthesis of tert-butyl 3-(7-(3-acetoxy-8-ethynyl-7-fluoronaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000410_0002
[00627] To a solution of tert-butyl 3-(7-(8-ethynyl-7-fluoro-3-hydroxynaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (25 mg, 0.034 mmol, 1.0 eq) in DCM (0.5 mL) was added TEA (10 mg, 0.10 mmol, 3.0 eq) and Acetic anhydride (4 mg, 0.041 mmol, 1.2 eq) at 0 °C under N2 atmosphere. The reaction mixture was stirred at room temperature for 2 h. Then the reaction mixture was concentrated in vacuo to give tert-butyl (lR,5S)-3-(7-(3-acetoxy-8-ethynyl-7-fluoronaphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (40 mg, crude) as a yellow liquid, which was used directly for the next step without any further purification. LCMS: m/z 790.3 (M+H+).
Step 2: Synthesis of l-(isobutyryloxy)ethyl 3-(7-(3-acetoxy-8-ethynyl-7-fluoronaphthalen-l- yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000411_0001
[00628] To a solution of tert-butyl 3-(7-(3-acetoxy-8-ethynyl-7-fluoronaphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-4-yl)-3,8-diazabicyclo[3.2. l]octane-8-carboxylate (40 mg, crude) in ACN (1.0 mL) was added HCl/Dioxane (0.28 mL) at 0 °C under N2 atmosphere. The reaction mixture was stirred at 0 °C for 2 h. Then to the reaction mixture was added l-(((4- nitrophenoxy)carbonyl)oxy)ethyl isobutyrate (12 mg, 0.041 mmol, 1.2 eq) and DIEA (154 mg, 1.19 mmol, 35.11 eq) at room temperature. The reaction mixture was stirred at room temperature for 2 h. Then the reaction mixture was filtered and the filtrate was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 50% to 70%) to give l-(isobutyryloxy)ethyl 3-(7-(3- acetoxy-8-ethynyl-7-fluoronaphthalen-l -yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (3.1 mg, 10.7% for two steps) as a white solid. 1H N R (400 MHz, DMSO-d6): 8 10.93 (s, 1H), 8.24 (t, J= 7.2 Hz, 1H), 8.04 (s, 1H), 7.68 (t, J= 8.8 Hz, 1H), 7.57 (s, 1H), 7.29 - 6.97 (m, 1H), 6.74 (s, 1H), 5.56 (d, J= 53.2 Hz, 1H), 4.70-.50 (m, 2H), 4.32 (d, J= 20.0 Hz, 2H), 4.14 (s, 1H), 3.80 (s, 6H), 3.34 - 3.29 (m, 1H), 2.67 (s, 1H), 2.35-2.25 (m, 5H), 2.17 (s, 2H), 2.01 (s, 2H), 1.85 (s, 3H), 1.64 (s, 1H), 1.47 (d, J= 3.6 Hz, 3H), 1.24 (s, 2H), 1.09 (s, 6H). LCMS: m/z 848.3 (M+H+).
Example 72
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-(trifluoromethyl)pyridin-
2(lH)-one 2,2,2-trifluoroacetate (1:1)
Figure imgf000412_0001
Synthesis scheme
Figure imgf000412_0002
Step 1 Synthesis of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-7-(2-methoxy-5-(trifluoromethyl)pyridin-4- yl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000413_0001
[00629] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (200 mg, 0.31 mmol, 1.0 eq) in toluene (2 mL) was added (2-methoxy-5- (trifluoromethyl)pyridin-4-yl)boronic acid (138 mg, 0.62 mmol, 2.0 eq), CS2CO3 (303 mg, 0.93 mmol, 3.0 eq), cataCXium A Pd G3 (44 mg, 0.06 mmol, 0.2 eq) and H2O (0.4 mL) at room temperature. The reaction mixture was heated under microwave irradiation under nitrogen atmosphere at 120 °C for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The organic phase was washed with brine (10 mL), dried with J feSO4, filtered and concentrated to give a crude. The crude was purified by prep-TLC (DCM : MeOH = 15 : 1) to give tert-butyl 3-(6,8-dif oro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxy-7-(2-methoxy-5-(trifluoromethyl)pyridin-4-yl)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (35 mg, 15.2%) as a yellow solid. LCMS: 738.9 (M+H+).
Step 2 Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-
(trifluoromethyl)pyridin-2(lH)-one 2,2,2-trifluoroacetate (1:1)
Figure imgf000413_0002
[00630] To a solution of tert-butyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy-7-(2-methoxy-5-(trifluoromethyl)pyri din-4- yl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (35 mg, 0.05 mmol, 1.0 eq) in EtOH (0.5 mL) was added HBr (40% in water) (0.5 mL). Then the reaction mixture was stirred at 80 °C for 1 h. The mixture was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 60%) to give 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahy dro- 1 H-pyrrolizin-7a(5H)-yl)methoxy)-5 -methoxy quinazolin-7 -yl)-5 - (trifluoromethyl)pyridin-2(lH)-one trifluoroacetate (1 : 1) (2.0 mg, 6.8%) as white solid. H NMR (300 MHz, CD30D): 3 12.71 (brs, 1H), 10.85 (s, 1H), 9.35 - 9.01 (m, 2H), 8.14 (s, 1H), 6.60 (s, 1H), 5.57 (d, J= 54.0 Hz, 1H), 4.55 (s, 2H), 4.26 - 4.02 (m, 4H), 3.90 - 3.71 (m, 6H), 3.66 - 3.54 (m, 3H), 2.75 - 2.54 (m, 2H), 2.37 - 2.01 (m, 5H), 1.97 - 1.88 (m, 3H). 19F NMR (300 MHz, CD3OD): 3 -59.327, -73.830, -130.018, -136.785, -173.036. LCMS: 625.2 (M +H+).
Example 73
4-((S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-2- amino-7-fluorobenzo[b]thiophene-3-carbonitrile
Figure imgf000414_0001
4-((R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-2- amino-7-fluorobenzo[b]thiophene-3-carbonitrile
Figure imgf000414_0002
Synthetic scheme:
Figure imgf000415_0001
the two isomers (R or S) cannot be confirmed
Step 1: Synthesis of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-
3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000415_0002
[00631] To a solution of tert-butyl 3-(2-chloro-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (2.0 g, 4.5 mmol, 1.0 eq) in THF (20 mL) was added LDA (2M) (6.8 mL, 13.5 mmol, 3.0 eq) at -65 °C under N2 atmosphere. The mixture was stirred at -65 °C for 30 min. The mixture was added l,2-dibromo-l,l,2,2-tetrafluoroethane (3.5 g, 13.5 mmol, 3.0 eq) at the same temperature, and stirred for 2.5 h. The reaction was quenched with H2O (15 mL). The mixture was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with brine (10 mL), dried over Na2SO4 and evaporated to dryness to give a crude. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 10: 1) to give compound tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (1.6 g, 68.1%) as a yellow solid. XH NMR (400 MHz, CDCL): δ 4.32 - 4.11 (m, 4H), 3.85 (s, 3H), 3.51 - 3.49 (m, 2H), 1.87 - 1.84 (m, 2H), 1.60 - 1.55 (m, 2H), 1.50 (s, 9H). LCMS: 519.0, 521.1 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-bromo-2,6,8-trifluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000416_0001
[00632] To a solution of tert-butyl 3-(7-bromo-2-chloro-6,8-difluoro-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (600 mg, 1.15 mmol, 1.0 eq) in DMSO (6 mL) was added KF (1.3 g, 23.0 mmol, 20.0 eq). The reaction mixture was stirred at 110 °C for 15 h under N2. The mixture was quenched with H2O (15 mL). The resulting mixture was extracted with EtOAc (10 mL x 3). The combined organic layers were washed with H2O (5 mL x 3), brine (5 mL), dried overNa2SO4 and concentrated to give crude product. The crude product was purified by silica gel column chromatography (Petroleum ether: EtOAc = 5: 1) to give tert-butyl 3-(7-bromo-2,6,8-trifluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (520 mg, 89.5%) as a yellow solid.
Figure imgf000416_0002
(300 MHz, CDCL): δ 4.28 - 4.13 (m, 4H), 3.86 (s, 3H), 3.54 - 3.51 (m, 2H), 1.85 - 1.83 (m, 2H), 1.62 - 1.60 (m, 2H), 1.50 (s, 9H). LCMS: 503.0, 505.0 (M+H+).
Step 3: Synthesis of tert-butyl 3-(7-bromo-2-(((5S,7aS)-5-(((tert- butyldiphenylsilyl)oxy)methyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)- 6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000417_0001
[00633] To a solution of tert-butyl 3-(7-bromo-2,6,8-trifluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (834 mg, 1.7 mmol, 1.4 eq) in THF (4 mL) was added 60% NaH (142 mg, 3.6 mmol, 3.0 eq) at 0 °C under N2. The reaction mixture was stirred at the same temperature for 0.5 h. To the mixture was added (5S,7aS)-5-(((tert- butyldiphenylsilyl)oxy)methyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (500 mg, 1.2 mmol, 1.0 eq) in THF (2 mL) at 0 °C under N2. The reaction mixture was stirred at 0 °C for 2.5 h. The reaction was quenched by the addition of H2O (5 mL). The mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4 and concentrated to give crude product. The crude product was purified by silica gel column chromatography (DCM: MeOH = 15: 1) to give tert-butyl 3-(7-bromo-2-(((5S,7aS)-5- (((tert-butyldiphenylsilyl)oxy)methyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (330 mg, 36.6%) as a white solid. 1H NMR (300 MHz, CDCl3): δ 7.71 (t, J = 6.6 Hz, 4H), 7.48 - 7.35 (m, 6H), 4.86 (s, 2H), 4.24 (brs, 2H), 4.12 - 4.00 (m, 4H), 3.79 (s, 3H), 3.62 - 3.51 (m, 3H), 3.40 (d, J= 7.8 Hz, 2H), 3.27 (d, J= 14.1 Hz, 1H), 2.99 - 2.89 (m, 1H), 2.73 (d, J = 15.3 Hz, 1H), 2.33 (d, J= 15.3 Hz, 1H), 2.21 (d, J= 6.0 Hz, 1H), 2.11-1.95 (m, 1H), 1.81 (s, 2H), 1.75 - 1.60 (m, 4H), 1.49 (s, 9H), 1.06 (s, 9H). LCMS: 904.2, 906.2 (M+H+).
Step 4: Synthesis of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000417_0002
[00634] To a solution of tert-butyl 3-(7-bromo-2-(((5S,7aS)-5-(((tert- butyldiphenylsilyl)oxy)methyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6,8- difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (300 mg, 0.33 mmol, 1.0 eq) in DMF (5.0 mL) was added CsF (1 g, 6.6 mmol, 20.0 eq). The mixture was stirred at 50 °C for 15 h. The resulting mixture was extracted with EtOAc (10 mL x 3). The combined organic layers were washed with FLO (5 mL x 3), brine (5 mL x 2), dried over Na2SO4 and concentrated to give crude product. The crude was purified by Prep-TLC (DCM: MeOH = 15: 1) to give teit-butyl 3-(7-bromo-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (180 mg, 81.4%) as a yellow solid. LCMS: 666.2, 668.2 (M+H+).
Step 5: Synthesis of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000418_0001
[00635] To a solution of tert-butyl 3-(7-bromo-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)- 2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (85 mg, 0.13 mmol, 1.0 eq) and tert-butyl (3-cyano-7- fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzo[b]thiophen-2-yl)carbamate (107 mg, 0.25 mmol, 2.0 eq) in PhMe (1.0 mL) and FLO (0.2 mL) was added K3PO4 (54 mg, 0.25 mmol, 2.0 eq), rac-BI-DIME (8 mg, 0.03 mmol, 0.2 eq) and Pd2(dba)s (17 mg, 0.02 mmol, 0.15 eq). The mixture was stirred at 120 °C for 1 h by microwave under N2. The reaction mixture was concentrated to give a crude. The crude was purified by Prep-TLC (DCM: MeOH ~ 15: 1) to give tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7-fluorobenzo[b]thiophen-4-yl)- 6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1 ]octane-8-carboxylate (35 mg, 31.2%) as a yellow solid. LCMS: 678.3 (M+H+).
Example 74 ethyl 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl- 6-fluoronaphthalen-2-yl)acetate
Figure imgf000419_0001
Synthesis scheme
Figure imgf000419_0002
Step 1: Synthesis of tert-butyl 3-(7-(3-(2-ethoxy-2-oxoethyl)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Boc
Figure imgf000420_0001
[00636] Tert-butyl 3-(7-bromo-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (160 mg, 0.25 mmol, 1.0 eq), ethyl 2-(6-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)- 5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate (162 mg, 0.30 mmol, 1.2 eq), cataCXium A Pd G3 (36 mg, 0.05 mmol, 0.2 eq) and CS2CO3 (244 mg, 0.75 mmol, 3.0 eq) were placed in the reaction bottle. A solution of PhMe/HiO (5/1, 9.6 mb) was added at room temperature. The mixture was stirred in microwave reactor at 120 °C for 1.5 h. The mixture was diluted with water (10 mL) and extracted with DCM: MeOH = 10: 1 (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by prep-TLC (DCM: MeOH = 15: 1) to give tert-butyl 3-(7-(3-(2-ethoxy-2- oxoethyl)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (110 mg, 45.2%) as a yellow liquid. LCMS: m/z 974.4 (M+H+).
Step 2: Synthesis of ethyl 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7- yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate
Figure imgf000421_0001
[00637] To a solution of tert-butyl 3-(7-(3-(2-ethoxy-2-oxoethyl)-7-fluoro-8-
((triisopropylsilyl)ethynyl)naphthalen-l -yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (30 mg, 0.031 mmol, 1.0 eq) in ACN (1.0 mL) was added HCl/Dioxane (0.25 mL) at 0 °C under Ni atmosphere. The reaction mixture was stirred at 0 °C for 2 h. Then the reaction mixture was concentrated in vacuo to give ethyl 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate (50 mg, crude) as a yellow liquid, which was used directly for the next step without any further purification. LCMS: m/z 874.4 (M+H+).
Step 3: Synthesis of ethyl 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7- yl)-5-ethynyl-6-fluoronaphthalen-2-yl)acetate formate (1: 0.4)
Figure imgf000421_0002
[00638] To a solution of ethyl 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetate (50 mg, crude) in DMF (0.5 mL) was added CsF (71 mg, 0.465 mmol, 15.0 eq). The reaction mixture was stirred at 40 °C for 6 h. Then the reaction mixture was filtered and the filtrate was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 15% to 41%) to give ethyl 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-yl)acetate (2.6 mg, with 04 FA, 1 1.0% for two steps) as a white solid. 'H NMR (400 MHz, CH3CN): 3 8.20 (s, 0.4H), 8.12-8.05 (m, 1H), 7.99 (s, 1H), 7.53 (s, 1H), 7.45 (t, J= 8.8 Hz, 1H), 5.26 (d, J= 54.4 Hz, 1H), 4.30-4.05 (m, 6H), 3.96 (d, J= 9.6 Hz, 1H), 3.85 (s, 2H), 3.79 (s, 3H), 3.52 (d, J= 14.4 Hz, 2H), 3.42 (d, J = 12.8 Hz, 1H), 3.33 (d, J= 12.8 Hz, 1H), 3.23 (s, 1H), 3.15 (d, J= 7.6 Hz, 2H), 3.08 (s, 1H), 2.91 (s, 1H), 2.20-2.10 (m, 6H), 1.90 - 1.79 (m, 4H), 1.22 (t, J= 7.2 Hz, 3H). LCMS: m/z 718.3 (M+H+).
Example 75
4-((R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-2- amino-7-fluorobenzo[b]thiophene-3-carbonitrile
Figure imgf000422_0001
Step 1: Synthesis of 4-((S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((5S,7aS)-5- (hydroxymethyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-2-amino-7-fliiorobenzo[b]thiophene-3-carbonitrile & 4-((R)-4- ((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-2-
amino-7-fluorobenzo[b]thiophene-3-carbonitrile
Figure imgf000423_0001
the two isomers (R or S) cannot be confirmed
[00639] To a solution of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (20 mg, 0.02 mmol, 1.0 eq) in DCM (2 mL) was added 4 N HCl/dioxane (1.5 mL, 6.0 mmol, 26.0 eq) at room temperature. Then the reaction mixture was stirred at 40 °C for 2 h. The reaction mixture was concentrated under reduced pressure to give a residue. The residue was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 50%) to give 4-((S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((5S,7aS)-5- (hydroxymethyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-2-amino-7-fluorobenzo[b]thiophene-3-carbonitrile (1.1 mg, 6.4%, the faster peak) as a white solid and 4-((R)-4-((lR,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8- difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-7-yl)-2-amino-7-fluorobenzo[b]thiophene-3-carbonitrile (1.1 mg, 6.4%, the slower peak) as a white solid, the two isomers (R or ) cannot be confirmed.
[00640] 4-((S)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((5S,7aS)-5-
(hydroxymethyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-2-amino-7-fluorobenzo[b]thiophene-3-carbonitrile (peak 1): 1H NMR (300 MHz, CD3OD): 7.39 - 7.28 (m, 1H), 7.12 - 6.95 (m, 1H), 5.31 (s, 2H), 4.69 (d, J= 12.9 Hz, 1H), 4.54 (d, J= 14.7 Hz, 1H), 4.39 (d, J= 15.0 Hz, 2H), 4.25 - 4.04 (m, 3H), 3.97 (d, J= 1.2 Hz, 3H), 3.95 - 3.56 (m, 6H), 2.98 (d, J= 15.9 Hz, 1H), 2.81 (d, J= 16.8 Hz, 1H), 2.59 - 2.48 (m, 1H), 2.28 - 1.96 (m, 7H). 19F NMR (300 MHz, CD3OD): 3 -117.767 -132.883, -135.857. LCMS: 678.2 (M+H+).
[00641] 4-((R)-4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((5S,7aS)-5-
(hydroxymethyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-2-amino-7-fluorobenzo[b]thiophene-3-carbonitrile (peak 2): 1H NMR (300 MHz, CD3OD): δ 7.39 - 7.28 (m, 1H), 7.12 - 7.00 (m, 1H), 5.19 (s, 2H), 4.66 (d, J= 12.6 Hz, 1H), 4.45 (d, J= 11.7 Hz, 2H), 4.30 (d, J= 14.7 Hz, 1H), 4.12 - 4.08 (m, 1H), 4.07 - 4.01 (m, 2H), 3.93 (s, 3H), 3.90 - 3.82 (m, 1H), 3.78 - 3.50 (m, 5H), 2.87 (d, J= 15.9 Hz, 1H), 2.67 (d, J= 15.6 Hz, 1H), 2.44 - 2.35 (m, 1H), 2.19 - 1.96 (m, 7H). 19F NMR (300 MHz, CD3OD): 3 -118.032, -132.714, -137.276 LCMS: 678.2 (M+H+).
Example 76
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolm-7-yl)-6-methyl-5-(trifluoromethyl)- lH-indazole-3-carbonitrile formate
Figure imgf000424_0001
Synthetic scheme
Figure imgf000425_0001
Step 1: Synthesis of tert-butyl 3-(7-(3-cyano-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5- (trifluoromethyl)-lH-indazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5FT)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000425_0002
[00642] To a solution of compound 4-bromo-6-methyl- l-(tetrahydro-2H-pyran-2-yl)-5- (trifluorom ethyl)- lH-indazole-3 -carbonitrile (30 mg x 6, 0.05 mmol, 1.0 eq) in THF (1 mb x 6) was added (TMP^Zn’MgCh’LiCl (0.8 mL x 6, 0.32 mmol, 6.0 eq, 0.4 M in THF) under nitrogen atmosphere. The reaction was stirred at 50 °C for 2 h. To the reaction was added tertbutyl 3-(6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (25 mg x 6, 0.06 mmol, 1.2 eq) and RuPhos Pd G2 (4 mg x 6, 0.005 mmol, 0.1 eq) in dioxane (2 mL x 6) under nitrogen atmosphere. The mixture was heated under microwave irradiation at 120 °C for 30 min. The residue was partitioned between EtOAc (20 mL) and water (20 mL). The layers were separated. The aqueous layer was extracted with EtOAc (20 mL x 3). The combined organic layers were washed with brine (20 mL), dried over MgSCL and evaporated to dryness. The crude product was purified by prep-TLC (DCM : methanol = 10 : 1) to give tert-butyl 3-(7-(3-cyano-6-methyl- l-(tetrahydro-2H-pyran-2-yl)-5-(trifluoromethyl)-lH-indazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (20 mg, 7.2%) as a yellow solid. LCMS: 871.3 (M+H+).
Step 2: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-methyl- 5-(trifluoromethyl)-lH-indazole-3-carbonitrile formate (1:3)
Figure imgf000426_0001
[00643] To a solution of tert-butyl 3-(7-(3-cyano-6-methyl-l-(tetrahydro-2H-pyran-2-yl)-5- (trifluoromethyl)-lH-indazol-4-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (20 mg, 0.02 mmol, 1.0 eq) in DCM (1 mL) was added TFA (0.5 mL). Then the reaction mixture was stirred at room temperature for 1 h. The mixture was concentrated and purified by prep- HPLC (acetonitrile with 0.1% FA in water, 10% to 50%) to give 4-(4-(3,8- diazabicyclo[3.2 1 ]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-methyl-5-(trifluoromethyl)-lH-indazole-3- carbonitri le formate (1 :3) (1.3 mg, 6.8%) as a white solid. 1H NMR (400 MHz, CD3OD): d 8.47 (brs, 3H), 8.00 (s, 1H), 5.41 (d, J= 51.2 Hz, 1H), 4.58 (s, 2H), 4.53 - 4.34 (m, 3H), 4.33 - 4.18 (m, 1H), 4.06 - 3.90 (m, 5H), 3.76 - 3.44 (m, 5H), 3.29 - 3.17 (m, 1H), 2.71 (s, 3H), 2.47 - 2.35 (m, 2H), 2.34 - 2.23 (m, 2H), 2.20 - 2.11 (m, 3H), 2.07 - 1.90 (m, 3H). 19F NMR (400 MHz, CD3OD): 3 -57.566, -131.421, -137.280, -173.957. LCMS: 687.2 (M+H+).
Example 77 6-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fliioro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-4-methyl-5-
(trifluoromethyl)pyridin-2-amine 2,2,2-trifluoroacetate (1:1)
Figure imgf000427_0001
Step 1: Synthesis of 7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-2,6-dichloro-8-fluoro-5-methoxyquinazolin-4-ol
Figure imgf000428_0001
[00644] To a solution of MeOH (34 mg, 1.1 mmol, 2.0 eq) in DMF (4 mL) was added NaH (105 mg, 2.6 mmol, 5.0 eq) at 0 °C under N2. The reaction mixture was stirred at the same temperature for 0.5 h. To the mixture was added 7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-2,6-dichloro-5,8-difluoroquinazolin-4-ol (350 mg, 0.53 mmol, 1.0 eq) in DMF (0.5 mL) at 0 °C under N2. The reaction mixture was stirred at 65 °C for 2 h. The reaction was quenched by the addition of water (5 mL). The mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4 and concentrated to give crude product. The crude product was purified by silica gel column chromatography (DCM: MeOH = 15: 1) to give 7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-2,6-dichloro-8-fluoro-5-methoxyquinazolin-4-ol (300 mg, 84.3%) as a white solid. 1H NMR (400 MHz, CDCl3): 3 10.38 (brs, 1H), 7.13 (d, J= 8.8 Hz, 4H), 6.84 (d, J= 8.8 Hz, 4H), 6.42 (s, 1H), 4.92 - 4.51 (m, 4H), 3.99 (s, 3H), 3.80 (s, 6H), 2.41 (q, J= 1.6 Hz, 3H). LCMS: 677.1 (M+H+).
Step 2 Synthesis of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-2,6-dichloro-8-fluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000428_0002
[00645] To a solution of 7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-2,6-dichloro-8-fluoro-5-methoxyquinazolin-4-ol (300 mg, 0.44 mmol, 1.0 eq) in DCM (5 mL) was added tert-butyl 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (122 mg, 0.58 mmol, 1.3 eq), DIEA (172 mg, 1.3 mmol, 3.0 eq) and BOP-CI (451 mg, 1.8 mmol, 4.0 eq). The reaction mixture was stirred at room temperature for 15 h. The mixture was washed with water (2 mL), brine (2 mL), dried over JSfeSCL and concentrated to give a crude. The crude was purified by silica gel column chromatography (Petroleum ether: EtOAc = 1 : 1) to give tertbutyl (lR,5S)-3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3-(trifluoromethyl)pyridin-2-yl)- 2,6-dichloro-8-fluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (230 mg, 59.6%) as a yellow solid. LCMS: 436.0 (M/2+H+).
Step 3 Synthesis of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000429_0001
[00646] A solution of compound tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-2,6-dichloro-8-fluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2 l]octane-8-carboxylate (200 mg, 0.23 mmol, 1.0 eq), ((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (40 mg, 0.25 mmol, 1.1 eq), DABCO (26 mg, 0.23 mmol, 1.0 eq), and CS2CO3 (224 mg, 0.69 mmol, 3.0 eq) in THF (2 mL) and DMF (2 mL) was stirred at room temperature for 15 h under nitrogen atmosphere. The mixture was added H2O (5 mL), extracted with EtOAc (5 mL x 3). The combined organic layers were washed with H2O (2 mL x 3), brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (DCM: MeOH = 15: 1) to give tert-butyl 3-(7- (6-(bis(4-methoxybenzyl)amino)-4-methyl-3-(tri fluoromethyl)pyri din-2 -yl)-6-chl oro-8-fluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)- 3,8-diazabicyclo[3.2.1]octane-8-carboxylate (180 mg, 78.9%) as a yellow solid. LCMS: 994.3 (M+H+).
Step 4: Synthesis of 6-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-niethoxyquinazolin-7-yl)-4- methyl-5-(trifluoromethyl)pyridin-2-amine 2,2,2-trifluoroacetate (1:1)
Figure imgf000430_0001
[00647] A solution of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (180 mg, 0.18 mmol, 1.0 eq) in TFA (4 mL) was stirred at 50 °C for 2 h. The mixture was concentrated to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 15% to 80%) to give 6-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-4- methyl-5-(trifluoromethyl)pyridin-2-amine 2,2,2-trifluoroacetate (1 :1) (90 mg, 66.2%) as a white solid.1H NMR (300 MHz, CD OD): 3 6.60 (s, 1H), 5.30 (d, J = 52.2 Hz, 1H), 4.54 - 4.06 (m, 4H), 3.98 - 3.86 (m, 2H), 3.73 (s, 3H), 3.69 - 3.41 (m, 5H), 3.21 - 3.11 (m, 1H), 2.44 (s, 3H), 2.40 - 1.88 (m, 10H). 19F NMR (300 MHz, CD3OD): 3 -56.584, -76.940, -132.327, -173.856. LCMS: 654.2 (M +H+).
Example 78
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-2-amino-7- fluorobenzo[b]thiophene-3-carbonitrile
Figure imgf000430_0002
Synthetic scheme
Figure imgf000431_0001
Step 1: Synthesis of 7-bromo-6-chloro-8-fluoro-5-methoxy-2-(methylthio) quinazolin-4-ol
Figure imgf000431_0002
[00648] To a solution of MeOH (74.5 mg, 2.33 mmol, 1.5 eq) in DMF (5.3 mL) was added NaH (60%, 362 mg, 9.05 mmol, 5.8 eq) at 0 °C. After 30 min, the mixture was added 7-bromo- 6-chloro-5,8-difluoro-2-(methylthio) quinazolin-4-ol (530 mg, 1.55 mmol, 1.0 eq). The mixture was stirred at room temperature for 30 min. The mixture was diluted with saturated NH4CI solution (10 mL) and extracted with DCM (10 mL x 3). The organic layer was washed with brine (10 mL x 2), dried over Na2SO4, filtered, and concentrated under reduced pressure to give the crude product 7-bromo-6-chloro-8-fluoro-5-methoxy-2-(methylthio) quinazolin-4-ol (300 mg, crude) as a brown solid. LCMS: m/z 352.8, 354.9 (M+H+).
Step 2: Synthesis of 7-bromo-4,6-dichloro-8-fluoro-5-niethoxy-2-(niethylthio)quinazoline
Figure imgf000432_0002
F F
[00649] To a solution of 7-bromo-6-chloro-8-fluoro-5-methoxy-2-(methylthio) quinazolin-4- ol (280 mg, 0.79 mmol, 1.0 eq) in POCl3 (2.2 mL) was added DIEA (512 mg, 3.96 mmol, 5.0 eq). The mixture was stirred at 90 °C for 1 h under nitrogen atmosphere. The reaction mixture was concentrated under reduced pressure to give the crude product 7-bromo-4,6-dichloro-8- fluoro-5-methoxy-2-(methylthio)quinazoline (crude) as a brown solid.
LCMS: no signa
Step 3: Synthesis of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-5-methoxy-2- (methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000432_0001
[00650] To a solution of 7-bromo-4,6-dichloro-8-fluoro-5-methoxy-2-(methylthio)quinazoline (crude, 0.79 mmol, 1.0 eq) in DCM (4 mL) was added DIEA (684 mg, 5.29 mmol, 6.7 eq) and tert-butyl(lR,5S)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (168 mg, 0.79 mmol, 1.0 eq) at - 40 °C. The mixture was stirred at -40 °C for 1 h under nitrogen atmosphere. The mixture was diluted with H2O (10 mL) and extracted with DCM (10 mL x 3). The organic layer was washed with brine (10 mL x 2), dried over Na2SO4, filtered, and concentrated under reduced pressure to give the crude product, which was purified by pre-TLC (petroleum ether: EtOAc = 3: 1) to afford tert-butyl (lR,5S)-3-(7-bromo-6-chloro-8-fluoro-5-methoxy-2-(methylthio)quinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (250 mg, 57.6% for two steps) as a yellow solid.
LCMS: m/z 547.1, 549.0 (M+H+).
Step 4: Synthesis of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-5-methoxy-2- (methylsulfonyl)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000433_0001
[00651] To a solution of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-5-methoxy-2- (methylthio)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (220 mg, 0.40 mmol, 1 .0 eq) in DCM (4.65 mL) was added m-CPBA (75%, 230 mg, 1 .0 mmol, 2.5 eq) at 0 °C under N2 atmosphere. The reaction mixture was stirred at room temperature for 2 h. The mixture was diluted with saturated sodium sulfite solution (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was dried over Na2SO4 and concentrated to give a crude product, which was purified by pre-TLC (Petroleum ether: EtOAc = 1 : 1) to afford tert-butyl 3-(7-bromo- 6-chloro-8-fluoro-5-methoxy-2-(methylsulfonyl)quinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane-8-carboxylate (170 mg, 73.3%) as a yellow liquid. LCMS: m/z 579.1, 581.0 (M+H+).
Step 5: Synthesis of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000433_0002
[00652] To a solution of compound tert-butyl 3-(7-bromo-6-chloro-8-fluoro-5-methoxy-2- (methylsulfonyl) quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (130 mg, 0.224 mmol, 1.0 eq) and ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (107 mg, 0.672 mmol, 3.0 eq) in THF (6.5 mL) was added LiHMDS (IM, 0.672 mL, 0.672 mmol, 3.0 eq) at 0 °C under N2 atmosphere. The reaction mixture was stirred at 0 °C for 1 h. The mixture was diluted with water (5 mL) and extracted with EtOAc (5 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by pre-TLC (Petroleum ether: EtOAc = 50: 1) to afford tert-butyl 3- (7-bromo-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo [3.2.1] octane- 8 -carb oxy late (110 mg, 74.6%) as a yellow liquid. LCMS: m/z 658.2, 660.1 (M+H+).
Step 6: Synthesis of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate
Figure imgf000434_0001
[00653] To a solution of tert-butyl 3-(7-bromo-6-chloro-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (60 mg, 0.091 mmol, 1.0 eq) in dioxane/HiO (3/1, 3.2 mL) was added tert-butyl (3-cyano-7-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)benzo[b]thiophen-2-yl)carbamate (45.8 mg, 0.11 mmol, 1.2-eq), Pd(dtpbf)C12 (11.8 mg, 0.018 mmol, 0.2 eq), K3PO4 (34.8 mg, 0.164 mmol, 1.8 eq). The sealed vial was irradiated in the microwave at 100 °C for 1 h. The mixture was diluted with water (10 mL) and extracted with EtOAc (10 mL x 3). The combined organic phase was washed with brine (10 mL), dried over Na2SO4 and concentrated to give a residue. The crude product was purified by pre-TLC (DCM: MeOH = 10: 1) to afford tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (40 mg, 50.5%) as a yellow solid. LCMS: m/z 658.1 (M+H+).
Step 7: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2-(((2R,7aS)- 2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-2-amino- 7-fluorobenzo[b]thiophene-3-carbonitrile
Figure imgf000435_0001
[00654] To a solution of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (100 mg, 0.115 mmol, 1.0 eq) in ACN (5 mb) was added HCl/dioxane (4 M, 0.92 mL, 3.677 mmol, 32.0 eq) at 0 °C under nitrogen atmosphere. The mixture was stirred at room temperature overnight. The reaction mixture was concentrated to give crude product, which was purified by pre-HPLC (0.1% FA) to afford 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-2- amino-7-fluorobenzo[b]thiophene-3-carbonitrile (5.8 mg, with 0.37 FA, 7.1%) as a white solid. 1H NMR (300 MHz, DMSO-uk): 3 8.09 (s, 2H), 7.37 - 7.23 (m, 1H), 7.14 (t, J= 8.8 Hz, 1H), 5.27 (d, J= 52.2 Hz, 1H), 4.03 (dd, J= 30 Hz, 10.9 Hz, 2H), 3.64 (s, 3H), 3.48 (s, 4H), 3.15-3.05 (m, 5H), 2.83 (s, 1H), 2.13 (s, 1H), 2.03 (s, 2H), 1.87 - 1.72 (m, 4H), 1.56 (s, 3H). LCMS: m/z 670.2 (M+H+).
Example 79 l-(Isobutyryloxy)ethyl 3-(7-(6-amino-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-6-chloro-8- fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000435_0002
Step 1: Synthesis of l-(isobutyryloxy)ethyl 3-(7-(6-amino-4-methyl-3-
(trifluoromethyl)pyridin-2-yl)-6-chloro-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.11octane-8- carboxylate
Figure imgf000436_0001
[00655] To a solution of 6-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-chloro-8-fluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-4- methyl-5-(trifluoromethyl)pyridin-2-amine (60 mg, 0.08 mmol, 1 .0 eq) in DCM (2 mL) was added l-(((4-nitrophenoxy)carbonyl)oxy)ethyl isobutyrate (28 mg, 0.09 mmol, 1.2 eq) and DIEA (31 mg, 0.24 mmol, 3.0 eq). The mixture was stirred at room temperature for 15 h. The mixture was purified by prep-TLC (DCM: MeOH ~ 10: 1) to give a crude. The crude was purified by Prep-HPLC (ACN with 0.1% FA in water, 20% to 80%) to give 1 -(isobutyryl oxy )ethyl 3-(7-(6- amino-4-methyl-3-(tri fluoromethyl)pyri din-2 -yl)-6-chl oro-8-fluoro-2-(((2R, 7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (16 mg, 24.6%) as a white solid. 1H NMR (400 MHz, CD3OD): d 6.82 (q, J= 5.6 Hz, 1H), 6.60 (s, 1H), 5.36 (d, J= 53.2 Hz, 1H), 4.68 - 4.13 (m, 6H), 3.70 (s, 3H), 3.65 - 3.31 (m, 5H), 3.17 - 3.07 (m, 1H), 2.68 - 2.50 (m, 1H), 2.44 (d, J= 1.2 Hz, 3H), 2.42 - 1.74 (m, 10H), 1.52 (d, J= 5.6 Hz, 3H), 1.26 - 1.13 (m, 6H). 19F NMR (400 MHz, CD3OD): S -56.590, -132.578, -173.746. LCMS: 812.2 (M+H+).
Example 80
2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2- yl)acetamide
Figure imgf000437_0001
Synthetic scheme
Figure imgf000437_0002
Step 1: Synthesis of 2-(4-(4-(8-(tert-butoxycarbonyl)-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetic acid
Figure imgf000438_0001
[00656] To a solution of tert-butyl 3-(7-(3-(2-ethoxy-2-oxoethyl)-7-fluoro-8-
((triisopropylsilyl) ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (60 mg, 0.062 mmol, 1.0 eq) in THF (2 mL) was added 1 N LiOH solution (1 mL). The reaction mixture was heated at 40 °C for 1.5 h. The mixture was diluted with water (10 mL) and adjusted to pH- 7 with IN HC1 (5 mL), extracted with DCM: MeOH = 10: 1 (10 mL x 3). The organic layers were dried over NaoSCL, filtered, and concentrated under reduced pressure to afford 2-(4-(4-(8-(tert-butoxycarbonyl)-3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetic acid (80 mg, crude) as a yellow liquid, which was used directly for the next step without any further purification. LCMS: m/z 946.4 ([M+H]+).
Step 2: Synthesis of tert-butyl 3-(7-(3-(2-amino-2-oxoethyl)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000438_0002
[00657] To a solution of 2-(4-(4-(8-(tert-butoxycarbonyl)-3,8-diazabicyclo[3.2.1]octan-3-yl)-
6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetic acid (80 mg, crude) in DMF (1 .2 mL) was added ammonium lH-benzo[d][l ,2,3]triazol-l-olate (29 mg, 0.19 mmol, 3.0 eq) and EDCI (36 mg, 0.19 mmol, 3.0 eq) at room temperature under N2 atmosphere. The reaction mixture was stirred at room temperature for 1.5 h. The mixture was diluted with water (10 mL) and extracted with DCM: MeOH = 10: 1 (10 mL x 3). The organic layers were dried over Na2SO4, filtered, and concentrated under reduced pressure to afford tertbutyl 3-(7-(3-(2-amino-2-oxoethyl)-7-fluoro-8-((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (140 mg, crude) as a yellow liquid, which was used directly for the next step without any further purification. LCMS: m/z 945.4 (M+H+).
Step 3: Synthesis of 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetamide
Figure imgf000439_0001
[00658] To a solution of tert-butyl 3-(7-(3-(2-amino-2-oxoethyl)-7-fluoro-8- ((triisopropylsilyl)ethynyl)naphthalen-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (140 mg, crude) in ACN (2.0 mL) was added HCl/Dioxane (4 M, 0.5 mL) at 0 °C under N2 atmosphere. The reaction mixture was stirred at 0 °C for 2h and concentrated under reduced pressure to give the crude product 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxy quinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetamide (70 mg, crude) as a yellow liquid, which was used directly for the next step without any further purification. LCMS: m/z 845.4 (M+H+). Step 4: Synthesis of 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl- 6-fluoronaphthalen-2-yl)acetamide
Figure imgf000440_0001
[00659] To a solution of 2-(4-(4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetamide (70 mg, crude) in DMF (1.0 mL) was added CsF (141 mg, 0.93 mmol, 15.0 eq). The reaction mixture was stirred at 40 °C for 4 h. Then the reaction mixture was filtered and the filtrate was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 30%) to give 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-yl)acetamide formate (8.1 mg, with 1.4 FA, 17.3% for four steps) as a yellow solid. 1H NMR (400 MHz, DMSO-d6): b 8.23 (s, 1 4H), 8.19 (dd, J= 9.2, 6.0 Hz, 1H), 8.04 (s, 1H), 7.70-7.50 (m, 3H), 7.00 (s, 1H), 5.28 (d, J= 54.4 Hz, 1H), 4.18 (s, 1H), 4.12-4.02 (m, 2H), 3.98 (d, J= 10.0 Hz, 1H), 3.77 (s, 4H), 3.61 (s, 3H), 3.47 (d, J= 12.4 Hz, 2H), 3.29 (d, J= 12.4 Hz, 2H), 3.18-3.02 (m, 2H), 3.01 (s, 1H), 2.90-2.80 (m, 1H), 2.32 - 1.94 (m, 4H), 1.85 - 1.74 (m, 4H), 1.69 (s, 2H). LCMS: m/z 689.3 ([M+H]+).
Example 81
2-(4-(4-(3,8-diazabicyclo|3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2- yl)acetic acid
Figure imgf000441_0001
Synthetic scheme
Figure imgf000441_0002
Step 1: Synthesis of 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetic acid
Figure imgf000441_0003
[00660] To a solution of 2-(4-(4-(8-(tert-butoxycarbonyl)-3,8-diazabicyclo[3.2.1]octan-3-yl)- 6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-6-fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetic acid (59 mg, 0.062 mmol, 1.0 eq) in ACN (2.0 mL) was added HCl/Dioxane (4 M, 0.5 mL) at 0 °C under N2 atmosphere The reaction mixture was stirred at 0 °C for 2 h. The reaction mixture was concentrated under reduced pressure to give the crude product 2-(4-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6-fluoro-5- ((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetic acid (50 mg, crude) as a yellow liquid, which was used directly for the next step without any further purification. LCMS: m/z 846.4 (M+H+).
Step 2: Synthesis of 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-5-ethynyl- 6-fluoronaphthalen-2-yl)acetic acid formate
Figure imgf000442_0001
[00661] To a solution of 2-(4-(4-(3,8-diazabicyclo[3.2. l]octan-3-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-6- fluoro-5-((triisopropylsilyl)ethynyl)naphthalen-2-yl)acetic acid (50 mg, crude) in DMF (1.0 mL) was added CsF (141 mg, 0.93 mmol, 15.0 eq) The reaction mixture was stirred at 40 °C for 6 h. Then the reaction mixture was filtered and the filtrate was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 20% to 30%) to give 2-(4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-5-ethynyl-6-fluoronaphthalen-2-yl)acetic acid (12.1 mg, with 0.3 FA, 27.7% for two steps) as a white solid. 1H NMR (400 MHz, DMSO-t/6): d 8.25 (s, 0.3H), 8.18 (dd, J= 9.2, 6.0 Hz, 1H), 8.06 (s, 1H), 7.63 - 7.52 (m, 2H), 5.27 (d, J= 53.6 Hz, 1H), 4.18 (d, J= 9.2 Hz, 1H), 4.10-4.05 (m, 2H), 3.97 (d, J= 10.4 Hz, 1H), 3.78 (s, 2H), 3.76 (s, 3H), 3.57 (d, J= 16.0 Hz, 2H), 3.45 (d, J= 12.4 Hz, 2H), 3.26 (d, J= 12.0 Hz, 2H), 3.15-3.05 (m, 2H), 3.01 (s, 1H), 2.90-2.75 (m, 1H), 2.22 - 1.93 (m, 4H), 1.85-1.75 (m, 4H), 1.70-1.60 (m, 2H). LCMS: m/z 690.2 ([M+H]+).
Example 82 6-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-(difluoromethyl)-8-fluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-4-methyl-
5-(trifluoromethyl)pyridin-2-amine 2,2,2-trifluoroacetate
Figure imgf000443_0001
Synthetic scheme:
Figure imgf000443_0002
Step 1: Synthesis of 7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3-
(trifluoromethyl)pyridin-2-yl)-2-chloro-6-(difluoromethyl)-8-fluoro-5-methoxyquinazolin-
4(3H)-one
Figure imgf000443_0003
[00662] To a solution of MeOH (7 mg, 0.22 mmol, 1 .5 eq) in DMF (2.0 mL) was added NaH (60%, 29 mg, 0.74 mmol, 5.0 eq). The mixture was stirred at room temperature for 0.5 h. Compound 7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-2- chloro-6-(difluoromethyl)-5,8-difluoroquinazolin-4(3H)-one (100 mg, 0.15 mmol, 1.0 eq) was added to the mixture. The mixture was stirred at room temperature for 15 h. The reaction mixture was quenched with saturated ammonium chloride aqueous solution (10 mL). The aqueous layer was extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over ISfeSCL and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 100: 1) to give compound 7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-2- chloro-6-(difluoromethyl)-8-fluoro-5-methoxyquinazolin-4(3H)-one (100 mg, 98.3%) as a yellow solid. 1H NMR (300 MHz, CDCl3): d 7.06 - 7.01 (m, 4H), 6.80 - 6.75 (m, 4H), 6.74 - 6.54 (m, 1H), 6.34 (s, 1H), 4.67 - 4.58 (m, 2H), 4.58 - 4.49 (m, 2H), 3.94 (s, 3H), 3.72 (s, 6H), 2.33 (s, 3H). LCMS: 693.2 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-2-chloro-6-(difluoromethyl)-8-fluoro-5-methoxyquinazolin- 4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000444_0001
[00663] To a solution of compound 7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-2-chloro-6-(difluoromethyl)-8-fluoro-5-methoxyquinazolin- 4(3H)-one (80 mg, 0.12 mmol, 1.0 eq) in DCM (2 mL) was added DIEA (224 mg, 1.7 mmol, 15.0 eq) and BOP-CI (118 mg, 0.46 mmol, 4.0 eq). The mixture was stirred at room temperature for 15 h. The reaction mixture was quenched with water (10 mL). The aqueous layer was extracted with DCM (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over ISfeSCL and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 150: 1) to give compound tertbutyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3-(trifluoromethyl)pyridin-2-yl)-2-chloro- 6-(difluoromethyl)-8-fluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (48 mg, 46.9%) as a yellow solid. LCMS: 444.0 (M/2+H+).
Step 3: Synthesis of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl)pyridin-2-yl)-6-(difluoroniethyl)-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro- lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000445_0001
[00664] To a solution of compound tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl- 3-(trifluoromethyl)pyridin-2-yl)-2-chloro-6-(difluoromethyl)-8-fluoro-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (40 mg, 0.045 mmol, 1.0 eq) in DMF (1 mL) and THF (1 mL) was added compound ((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methanol (8.6 mg, 0.054 mmol, 1.2 eq), CS2CO3 (44 mg, 0.14 mmol, 3.0 eq) and DABCO (5 mg, 0 045 mmol, 1 .0 eq). The mixture was stirred at room temperature for 15 h. The reaction mixture was quenched with water (10 mL). The aqueous layer was extracted with ethyl acetate (10 mL x 3). The combined organic layers were washed with H2O (10 mL), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by silica gel column chromatography (Dichloromethane: Methanol = 60: 1) to give compound tert-butyl 3-(7-(6- (bis(4-methoxybenzyl)amino)-4-methyl-3-(tri fluoromethyl)pyri din-2 -yl)-6-(difluoromethyl)-8- fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (27 mg, 59.3%) as a yellow solid. LCMS: 505.8 (M/2+H+).
Step 4 Synthesis of 6-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6-(difluoromethyl)-8-fluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7- yl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine 2,2,2-trifluoroacetate (1:1)
Figure imgf000446_0001
[00665] A solution of tert-butyl 3-(7-(6-(bis(4-methoxybenzyl)amino)-4-methyl-3- (trifluoromethyl) pyridin-2-yl)-6-(difluoromethyl)-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (40 mg, 0.04 mmol, 1.0 eq) in TFA (1 mL) was stirred at 50 °C for 4 h. The mixture was concentrated to give a residue. The residue was purified by Prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 60%) to give 6-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-6- (difluoromethyl)-8-fluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-7-yl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine 2,2,2-trifluoroacetate (1: 1) (12.2 mg, 39.3%) as a white solid.
Figure imgf000446_0002
6.85 (t, J =53.6 Hz, 1H), 6.59 (s, 1H), 5.43 (d, J=52.8 Hz, 1H), 4.53 - 4.40 (m, 2H), 4.02 - 3.86 (m, 2H), 3.75 (s, 3H), 3.70 - 3.61 (m, 2H), 3.61 - 3.46 (m, 3H) , 3.45 - 3.31 (m, 1H), 3.27 - 3.11 (m, 2H), 2.62 - 2.47 (m, 1H), 2.44 (s, 3H), 2.41 - 2.34 (m, 1H), 2.34 - 2.24 (m, 1H), 2.23 - 2.09 (m, 2H), 2.09 - 1.73 (m, 5H). 19F NMR (300 MHz, CD3OD): d -56.099, -76.927, -111.275, -134.677, -173.909. LCMS: 670.2 (M+H+).
Example 83
((3S,7aS)-7a-(((7-(2-amino-3-cyano-7-fluorobenzo[b]thiophen-4-yl)-4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-5-methoxy quinazolin-2-yl)oxy)methyl)-6- methylenehexahydro-lH-pyrrolizin-3-yl)methyl 3,3-difluoropyrrolidine-l-carboxylate formate
Figure imgf000446_0003
Synthetic scheme:
Figure imgf000447_0001
Step 1: Synthesis of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-5-methoxy-2-(((5S,7aS)-2-methylene-5-((((4- nitrophenoxy)carbonyl)oxy)methyl)tetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)quinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000447_0002
[00666] To a solution of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-2-(((5S,7aS)-5-(hydroxymethyl)-2- methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (40 mg, 0.04 mmol, 1.0 eq) in THF (1.5 mL) was added 4-nitrophenyl carbonochloridate (40 mg, 0.20 mmol, 5.0 eq) and TEA (24 mg, 0.24 mmol, 6.0 eq). The reaction mixture was stirred at 50 °C for 5 h under N2. The reaction mixture was concentrated to give tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-5-methoxy-2-(((5S,7aS)-2-methylene-5-((((4- nitrophenoxy)carbonyl)oxy)methyl)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, crude) as a yellow oil.
Step 2: Synthesis of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-2-(((5S,7aS)-5-(((3,3-difluoropyrrolidine-l- carbonyl)oxy)methyl)-2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6,8- difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate
Figure imgf000448_0001
[00667] To a solution of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-6,8-difluoro-5-methoxy-2-(((5S,7aS)-2-methylene-5-((((4- nitrophenoxy)carbonyl)oxy)methyl)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)quinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (50 mg, 0.04 mmol, 1.0 eq) in THF (1.5 mL) was added 3, 3 -difluoropyrrolidine (25 mg, 0.24 mmol, 6.0 eq) and TEA (24 mg, 0.24 mmol, 6.0 eq). The reaction mixture was stirred at room temperature for 2 h under N2. The reaction was quenched with H2O (5 mL). The resulting mixture was extracted with EtOAc (10 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4 and concentrated to give a crude product. The crude was purified by Prep-TLC (DCM / MeOH = 10 / 1) to give tertbutyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7-fluorobenzo[b]thiophen-4-yl)-2- (((5S,7aS)-5-(((3,3-difluoropyrrolidine-l-carbonyl)oxy)methyl)-2-methylenetetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate (12 mg, 26.1%, two steps yield) as a yellow solid. LCMS: 505.8 (M/2+H+).
Step 3: Synthesis of ((3S,7aS)-7a-(((7-(2-amino-3-cyano-7-fluorobenzo[b]thiophen-4-yl)-4- (3,8-diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-5-methoxyquinazolin-2-yl)oxy)methyl)-6- methylenehexahydro-lFT-pyrrolizin-3-yl)methyl 3, 3-difluoropyrrolidine-l -carboxylate formate (1:0.8)
Figure imgf000449_0001
[00668] To a solution of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-2-(((5S,7aS)-5-(((3,3-difluoropyrrolidine-l-carbonyl)oxy)methyl)- 2-methylenetetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4- yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (12 mg, 0.01 mmol, 1.0 eq) in DCM (1.0 mL) was added TFA (0.3 mL). The reaction mixture was stirred at 40 °C for 2 h under N2. The mixture was concentrated to give a crude. The crude was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 50%) to give ((3S,7aS)-7a-(((7-(2-amino-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-4-(3,8 diazabicyclo[3.2.1]octan-3-yl)-6,8-difluoro-5- methoxyquinazolin-2-yl)oxy) methyl)-6-methylenehexahydro-lH-pyrrolizin-3-yl)methyl 3,3- difluoropyrrolidine-1 -carboxylate formate (1 :0.8) (4.6 mg, 47.9%) as a white solid. 1H NMR (400 MHz, CD3OD) 3 8.51 (brs, 1H), 7.30 - 7.28 (m, 1H), 7.04 (t, J= 8.8 Hz, 1H), 4.94 (s, 2H), 4.39 - 4.23 (m, 3H), 4.19 - 4.09 (m, 2H), 4.02 - 3.98 (m, 1H), 3.89 (s, 3H), 3.85 (s, 2H), 3.78 - 3.65 (m, 4H), 3.62 - 3.52 (m, 3H), 3.44 - 3.38 (m, 2H), 3.13 - 3.08 (m, 1H), 2.70 (d, J= 15.6 Hz, 1H), 2.41 (d, J= 15.6 Hz, 2H), 2.31 - 2.22 (m, 1H), 2.12 - 2.03 (m, 1H), 2.01 - 1.90 (s, 4H), 1.88 - 1.75 (m, 2H). 19F NMR (400 MHz, CD3OD): 3 -103.694, -118.368, -132.558, -138.794. LCMS: 811.2 (M+H+).
Example 84
6-(4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-4-methyl-5- (trifluoromethyl)pyridin-2-amine 2,2,2-trifluoroacetate
Figure imgf000450_0001
Synthetic scheme:
Figure imgf000450_0002
Step 1: Synthesis of 6-(4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-N,N-bis(4- methoxybenzyl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine
Figure imgf000450_0003
[00669] To a solution of 4-(3,3-difluoropiperidin- l -yl )-6,8-difluoro-2-(((2R.,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (60 mg, 0.13 mmol, 1.0 eq) in THF (2 mL) was added (TMP)2Zn-MgCl2-LiCl (0.4 M in THF) (1.9 mL, 0.76 mmol, 6.0 eq) dropwise. The reaction mixture was stirred at 50 °C for 2 h under N2 atmosphere. To the mixture was added a solution of 6-chloro-N,N-bis(4-methoxybenzyl)-4-methyl-5- (trifluoromethyl)pyridin-2-amine (69 mg, 0.15 mmol, 1.2 eq) and CPhos Pd G4 (10 mg, 0.012 mmol, 0.1 eq) in dioxane (2 mL). The reaction mixture was stirred at 80 °C for 12 h. The mixture was filtered and the filtrate was concentrated to give a residue. The residue was purified by silica gel column chromatography (DCM: MeOH = 15: 1) to give 6-(4-(3,3-difluoropiperidin-l-yl)- 6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxy quinazolin-7-yl)-N,N-bis(4-methoxybenzyl)-4-methyl-5-(trifluoromethyl)pyri din-2- amine (50 mg, 44.2%) as a yellow solid. LCMS: m/z 887.3 (M+H+).
Step 2: Synthesis of 6-(4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-4-methyl-
5-(trifluoromethyl)pyridin-2-amine 2,2,2-trifluoroacetate
Figure imgf000451_0001
[00670] To a solution of 6-(4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-N,N-bis(4- methoxybenzyl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine (50 mg, 0.056 mmol, 1.0 eq) in DCM (1 mL) was added TFA (0.2 mL) at 0 °C. The reaction mixture was stirred at 50 °C for 2 h under N2 atmosphere. The mixture was concentrated to give a crude. The crude was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 50%) to give 6-(4-(3,3- difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazolin-7-yl)-4-methyl-5-(trifluoromethyl)pyridin-2-amine 2,2,2- trifluoroacetate (1:0.6) (13 mg, 30.3%) as a white solid. 1H NMR (300 MHz, CD3OD): 3 6.61 (s, 1H), 5.49 (d, J= 52.2 Hz, 1H), 4.65 - 4.45 (m, 2H), 3.98 - 3.56 (m, 10H), 2.74 - 1.94 (m, 14H). 19F NMR (300 MHz, CD3OD): 3 -56.392, -76.941, -102.042, -134.245, -139.041, -174.089. LCMS: m/z 647.2 (M+H+).
Example 85
2-Amino-4-(4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-7-fluorobenzo[b]thiophene-3- carbonitrile 2,2,2-trifluoroacetate
Figure imgf000452_0001
Step 1: Synthesis of 2-chloro-4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-5- methoxyquinazoline
Figure imgf000452_0002
[00671] To a solution of 2,4-dichloro-6,8-difluoro-5-methoxyquinazoline (600 mg, 2.2 mmol, 1.0 eq) and DIEA (851 mg, 6.6 mmol, 3.0 eq) in DCM (6 mL) was added 3,3-difluoropiperidine (338 mg, 2.8 mmol, 1.3 eq) at -40 °C. The reaction mixture was stirred at -40 °C for 2 h under nitrogen atmosphere. The mixture was concentrated to give a residue. The residue was partitioned between DCM (10 mL) and water (5 mL). The layers were separated. The aqueous layer was extracted with DCM (5 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by prep- TLC (Petroleum ether: EtOAc = 15: 1) to give 2-chloro-4-(3,3-difluoropiperidin-l-yl)-6,8- difluoro-5-methoxyquinazoline (710 mg, 89.1%) as a yellow solid. LCMS: m/z 350.1 (M+H+).
Step 2: Synthesis of 4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline
Figure imgf000453_0001
[00672] To a solution of 2-chloro-4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-5- methoxyquinazoline (710 mg, 2.0 mmol, 1.0 eq) in THF (5 mL) and DMF (5 mL) was added ((2R)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl) methanol (381 mg, 2.4 mmol, 1.2 eq), DABCO (224 mg, 2.0 mmol, 1.0 eq) and CS2CO3 (1.9 g, 6.0 mmol, 3.0 eq). The reaction mixture was stirred at room temperature for 15 h under nitrogen atmosphere. The mixture was added H2O (10 mL). The resulting mixture was extracted with EtOAc (15 mL x 3). The combined organic layers were washed with H2O (10 mL x 3), brine (10 mL), dried over Na2SO4 and evaporated to dryness. The crude was purified by Prep-TLC (DCM: MeOH = 10: 1) to give 4-(3,3- difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-5-methoxyquinazoline (870 mg, 90.6%) as a yellow solid. 1H NMR (400 MHz, CDCl3): 3 7.27 (t, J= 10.0 Hz, 1H), 5.26 (d, J= 53.2 Hz, 1H), 4.24 (d, J= 10.0 Hz, 1H), 4.14 (d, J= 10.4 Hz, 1H), 3.90 - 3.74 (m, 5H), 3.42 (s, 2H), 3.29 - 3.21 (m, 2H), 3.20 - 3.12 (m, 1H), 2.99 - 2.93 (m, 1H), 2.26 (d, J= 4.0 Hz, 1H), 2.20 - 1.85 (m, 9H). LCMS: m/z 473.2 (M+H+). Step 3: Synthesis of 7-bromo-4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline
Figure imgf000454_0001
[00673] To a solution of 4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (460 mg, 0.97 mmol, 1.0 eq) in THF (5 mL) was added LDA (1.0 mL, 1.9 mmol, 2.0 eq) at -65 °C under N2 atmosphere. The mixture was stirred at -65 °C for 30 min. The mixture was added 1,2-dibromo- 1,1,2,2-tetrafluoroethane (373 mg, 1.4 mmol, 1.5 eq) at the same temperature, and stirred for 2.5 h. The reaction was quenched with water (5 mL). The mixture was extracted with EtOAc (5 mL x 3). The combined organic layers were washed with brine (5 mL), dried over Na2SO4 and evaporated to dryness. The reaction was repeated for two times. The crude product was purified by prep-TLC (DCM: MeOH = 12: 1) to give 7-bromo-4-(3,3-difluoropiperidin-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazoline (450 mg, 83.9%) as a yellow solid. LCMS: m/z 551.1, 553.1 (M+H+).
Step 4: Synthesis of tert-butyl (3-cyano-4-(4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7- yl)-7-fluorobenzo[b]thiophen-2-yl)carbamate
Figure imgf000454_0002
[00674] A solution of 7-bromo-4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazoline (50 mg, 0.09 mmol, 1.0 eq), tert-butyl (3-cyano-7-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)benzo[b]thiophen-2-yl)carbamate (56 mg, 0.13 mmol, 1.5 eq), K3PO4 (57 mg, 0.27 mmol, 3.0 eq) and Pd2(dppf)C12’DCM (8 mg, 0.01 mmol, 0.15 eq) in dioxane (2 mL) and H2O (0.4 mL) was stirred at 110 °C for 1 h by microwave under nitrogen atmosphere. The mixture was concentrated to give the crude product. The crude product was purified by Prep-TLC (DCM: MeOH = 12: 1 ) to give tert-butyl (3-cyano-4-(4-(3,3-difluoropiperidin-l -yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-7- fluorobenzo[b]thiophen-2-yl)carbamate (20 mg, 28.9%) as a white solid. LCMS: m/z 763.2 (M+H+).
Step 5: Synthesis of 2-amino-4-(4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2-(((2R,7aS)-2- fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-7- fluorobenzo[b]thiophene-3-carbonitrile 2,2,2-trifluoroacetate (1:1)
Figure imgf000455_0001
[00675] To a solution of tert-butyl (3-cyano-4-(4-(3,3-difluoropiperidin-l-yl)-6,8-difluoro-2- (((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5-methoxyquinazolin-7-yl)-7- fluorobenzo[b]thiophen-2-yl)carbamate (20 mg, 0.027 mmol, 1.0 eq) in DCM (1 mL) was added TFA (0.3 mL). The reaction mixture was stirred at 40 °C for 2 h under N2 atmosphere. The mixture was concentrated to give a crude. The crude was purified by prep-HPLC (acetonitrile with 0.1% FA in water, 10% to 50%) to give 2-amino-4-(4-(3,3-difluoropiperidin-l-yl)-6,8- difluoro-2-(((2R,7aS)-2-fluorotetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-5- methoxyquinazolin-7-yl)-7-fluorobenzo[b]thiophene-3-carbonitrile 2,2,2-trifluoroacetate (1: 1) (1.8 mg, 8.8%) as a white solid. 1H NMR (400 MHz, CD3OD): d 7.31 (dd, J= 8.4, 5.2 Hz, 1H), 7.06 (t, J= 8.8 Hz, 1H), 5.55 (d, J= 51.6 Hz, 1H), 4.69 - 4.50 (m, 6H), 3.99 - 3.81 (m, 6H), 3.52 - 3.45 (m, 1H), 2.80 - 1.95 (m, 10H). 19F NMR (400 MHz, CD3OD): 3 -76.932, -101.334 (d, ./F-F = 256.8 Hz, IF), -102.781 (d, JF-F = 256.4 Hz, IF), -118.018, -132.716, -136.502, -174.267. LCMS: m/z 663.2 (M+H+).
Example 86
4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-(((S)-2-(difluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-2-amino-7- fluorobenzo[b]thiophene-3-carbonitrile
Figure imgf000456_0001
Step 1: Synthesis of tert-butyl 3-(7-bromo-2-(((S)-2-(difluoromethylene)tetrahydro-lH- pyrrolizin-7a(5H)-yl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8- diazabicyclo[3.2.1]octane-8-carboxylate
Boc
Figure imgf000456_0002
[00676] To a solution of compound tert-butyl 3-(7-bromo-2,6,8-trifluoro-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (150 mg, 0.30 mmol, 1.0 eq) in DMF (1 .5 mL) and THF (1.5 mL) was added compound (S)-(2- (difluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methanol (51 mg, 0.30 mmol, 0.9 eq), CS2CO3 (292 mg, 0.90 mmol, 3.0 eq) and DABCO (34 mg, 0.30 mmol, 1.0 eq). The mixture was stirred at room temperature for 15 h. The reaction mixture was quenched with water (20 mL). The aqueous layer was extracted with ethyl acetate (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over Na2SO4 and evaporated to dryness. The crude product was purified by Prep-TLC (Dichloromethane: Methanol = 15 : 1) to give compound tert-butyl 3-(7-bromo-2-(((S)-2-(difluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (78 mg, 38.9%) as a yellow solid. 'H N R (400 MHz, CDCL): δ 4.33 - 4.07 (m, 5H), 3.81 (s, 3H), 3.49 - 3.32 (m, 3H), 3.26 - 3.11 (m, 1H), 2.86 - 2.75 (m, 1H), 2.71 - 2.58 (m, 1H), 2.45 - 2.34 (m, 1H), 2.21 - 2.11 (m, 1H), 1.98 - 1.88 (m, 2H), 1.88 - 1.77 (m, 3H), 1.74 - 1.60 (m, 4H), 1.49 (s, 9H). LCMS: 672.2, 674.2 (M+H+).
Step 2: Synthesis of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-2-(((S)-2-(difluoromethylene)tetrahydro-lH-pyrrolizin- 7a(5H)-yl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane- 8-carboxylate
Figure imgf000457_0001
[00677] To a solution of compound tert-butyl 3-(7-bromo-2-(((S)-2- (difluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6,8-difluoro-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (78 mg, 0.12 mmol, 1.0 eq) in dioxane (3.0 mL) and H2O (1.0 mL) was added compound tert-butyl (3-cyano-7-fluoro-4- (4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzo[b]thiophen-2-yl)carbamate (58 mg, 0.14 mmol, 1.2 eq), K3PO4 (49 mg, 0.23 mmol, 2.0 eq) and Pd(dtbpf)C12 (8 mg, 0.01 mmol, 0.1 eq). The mixture was stirred at 90 °C for 3 h. The reaction mixture was quenched with water (20 mL). The aqueous layer was extracted with ethyl acetate (20 mL x 3). The combined organic layers were washed with H2O (20 mL), brine (20 mL), dried over NazSCb and evaporated to dryness. The crude product was purified by Prep-TLC (Dichloromethane : Methanol = 15 : 1) to give compound tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7-fluorobenzo[b]thiophen-4- yl)-2-(((S)-2-(difluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6,8-difluoro-5- methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8-carboxylate (20 mg, 19.5%) as a yellow solid. 1H NMR (400 MHz, CDCl3): 3 7.77 (brs, 1H), 7.46 - 7.35 (m, 1H), 7.16 (t, J= 8.0 Hz, 1H), 4.34 - 4.19 (m, 3H), 3.86 (s, 3H), 3.83 - 3.71 (m, 1H), 3.55 - 3.42 (m, 2H), 3.41 - 3.31 (m, 1H), 3.27 - 3.11 (m, 1H), 2.91 - 2.78 (m, 1H), 2.70 - 2.60 (m, 1H), 2.46 - 2.35 (m, 1H), 2.26 - 2.15 (m, 1H), 1.99 - 1.89 (m, 2H), 1.88 - 1.78 (m, 3H), 1.77 - 1.59 (m, 4H), 1.56 (s, 9H), 1.50 (s, 9H). LCMS: 442.7 (M/2+H+).
Step 3: Synthesis of 4-(4-(3,8-diazabicyclo[3.2.1]octan-3-yl)-2-(((S)-2- (difluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)-yl)methoxy)-6,8-difluoro-5- methoxyquinazolin-7-yl)-2-amino-7-fluorobenzo[b]thiophene-3-carbonitrile
Figure imgf000458_0001
[00678] A solution of tert-butyl 3-(7-(2-((tert-butoxycarbonyl)amino)-3-cyano-7- fluorobenzo[b]thiophen-4-yl)-2-(((S)-2-(difluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-6,8-difluoro-5-methoxyquinazolin-4-yl)-3,8-diazabicyclo[3.2.1]octane-8- carboxylate (23 mg, 0.03 mmol, 1.0 eq) in TFA (1.0 mL) and DCM (1.0 mL) was stirred at room temperature for 0.5 h. The mixture was concentrated to give a residue. The residue was purified by Prep-TLC (Dichloromethane : 0.1% NH4OH in methanol = 5 : 1) to give 4-(4-(3,8- diazabicyclo[3.2.1]octan-3-yl)-2-(((S)-2-(difluoromethylene)tetrahydro-lH-pyrrolizin-7a(5H)- yl)methoxy)-6,8-difluoro-5-methoxyquinazolin-7-yl)-2-amino-7-fluorobenzo[b]thiophene-3- carbonitrile (8.9 mg, 50.0%) as a white solid. 1H NMR (400 MHz, CD3OD): 3 8.74 - 8.60 (m, 1H), 8.40 (t, 9.2 Hz, 1H), 5.60 - 5.36 (m, 3H), 5.23 - 5.08 (m, 4H), 5.06 - 4.93 (m, 2H), 4.68 - 4.56 (m, 1H), 4.40 - 4.30 (m, 1H), 4.06 - 3.97 (m, 1H), 3.96 - 3.88 (m, 1H), 3 76 - 3.64 (m, 1H), 3.43 - 3.34 (m, 3H), 3.25 - 3.01 (m, 6H), 2.66 - 2.48 (m, 2H). LCMS: 684.2 (M+H+).
Biological binding assays:
KRAS/SOS1-RAF1 HTRF binding assay
[00679] The test compounds were prepared as lOmM stock solution in 100% DMSO. The stock solution was then serially diluted 3 -fold in 100% DMSO to 10 concentrations. 200nL of each diluted compound solution was transferred to 384-well plate in duplicate. To each well, 5 pL of lOnM enzyme solution containing Biotin-KRAS G12D or WT protein with final concentration of 2.5 nM in the assay buffer (50mM HEPES, pH7.5, 50mM NaCl, 5mM MgCh, ImM DTT, 0.1% BSA, 0.01% Triton X-100). For negative control, 5 pL of assay buffer was added instead. The plate was incubated at room temperature for 20 min. 5 pL of S0S1 and GTP (final concentration at 100 nM and 10 pM, respectively) were subsequently added to each well to initiate the nucleotide exchange. After incubation at room temperature for 2 hours, 5 pL of GST- RAF1 (final concentration at 8 nM) was added. All reactions were incubated at room temperature for 20 min and then 5 pL of lx anti-GST-XL665 and lx Streptavidin-Tb were added for detection. After one-hour incubation at room temperature, all samples were subjected to read the TR-FRET signal on Envision with excitation at 340 nm and emission fluorescence at 615 nm and 665 nm. IC50 values were then calculated by plotting dose-response curves and then using the XLfit application in Excel software.
KRAS(GMPPNP)-RAF1 HTRF binding assay
[00680] The test compounds were prepared as lOmM stock solution in 100% DMSO. The stock solution was then serially diluted 3 -fold in 100% DMSO to 10 concentrations. 200nL of each diluted compound solution was transferred to 384-well plate in duplicate. To each well, 10 pL of enzyme solution containing Biotin-KRAS G12D or WT protein with final concentration of 5 nM or 2 nM in the assay buffer (50mM HEPES, pH7.5, 50mM NaCl, 5mM MgCh, ImM DTT, 0.1% BSA, 0.01% Triton X-100), respectively. For negative control, 10 pL of assay buffer was added instead. The plate was incubated at room temperature for 20 min. 5 pL of GST-RAF1 (final concentration at 8 nM) was subsequently added to each well. Then 5 pL of lx anti-GST- XL665 and lx Streptavidin-Tb were added for detection. After one-hour incubation at room temperature, all samples were subjected to read the TR-FRET signal on Envision with excitation at 340nm and emission fluorescence at 615 nm and 665 nm. TC50 values were then calculated by plotting dose-response curves and then using the XLfit application in Excel software.
Table 2: Binding Assay Activities*
Figure imgf000460_0001
Figure imgf000461_0001
Figure imgf000462_0001
Figure imgf000463_0001
*A: < 100 nM; B: 100 nM - 1 uM; C: >1 uM; N: not tested
Cell base assay:
2D CTG proliferation assay
[00681 ] KRASG12D mutant or WT cells were grown in culture media according to vendors’ instructions. Cells were plated in clear bottom tissue culture treated 96-well plates at a density of 1000-2000 cells/well in a volume of 100 pL and allowed to recover overnight. The edge wells were filled with cell culture media without cells. The plated cells were treated with a 3-fold 9- point serial dilution doses of test compounds, or DMSO control. Compounds were prepared as 10 mM DMSO stock solution and added to the cells with a HP D300 digital dispenser. The top final concentration varied from 10 to 1 pM depending on the potency of the compounds, with the final concentration of DMSO to be 0.1%. Following 3 days of drug treatment, 100 pL of Cell Titer-Gio (CTG) (Promega, G7570) reagent was added to the cells using a Multidrop Combi instrument. The plates were placed on an orbital shaker for 10 minutes to induce cell lysis, and further incubated at room temperature for 10 minutes to stabilize luminescent signal. The luminescence signal was read on Envision with a measurement time of 0.1 s.
[00682] Cell proliferation percent inhibition values were calculated using the following equation:
Inhibition% = [1-(T120compound-T120blank)/(T120DMSO- T120blank)]x 100%.
T120compound: the signals from compound-treated wells.
T120blank: the signals from blank wells.
T120DMSO: the signals from 0.5%DMSO-treated wells.
[00683] XLfit software (Fit model: Dose response one site/ was used for curve fitting and TC50 calculation.
Figure imgf000464_0001
Table 3. Cell Assay Activities
Figure imgf000465_0001
Figure imgf000466_0001
Figure imgf000467_0001
Figure imgf000468_0001
*A: < 100 nM; B: 100 nM - 1 uM; C: >1 uM; N: not tested pERK Assay (Western Blot)
[00684] KRASG12D mutant or WT cells were grown in culture media specified by the vendors. Cells were plated in tissue culture treated 6 well plates at a density of 0.5xl0A6 cells/well in 3 mL of culture media and allowed to recover overnight. The plated cells were treated with a 3-fold 9-point serial dilution doses of test compound, or DMSO. Compounds were prepared as 10 mM DMSO stock solution, and 3 pL of the diluted compounds were added to the cells, with a final concentration of 0.1% DMSO. Following 3 hours of drug treatment, cells were lysed on the plate by adding 100 pL of lysis buffer containing protease inhibitor and phosphatase inhibitor. Cells were scraped and transferred to 1.5 mL microcentrifuge tubes. Cell lysates were centrifuged at 13,000 x g for 15 minutes at 4°C. The protein concentrations were determined using the BCA kit. All sample supernatants were transferred to Eppendorf tubes and stored at - 80 °C.
[00685] For Western blot, 15-20 pg of protein was loaded into each well. Following electrophoresis, proteins were transferred to a fdter membrane. The membrane was incubated in blocking buffer (LI-COR) for an hour at room temperature with rocking and was incubated overnight at 4 °C in primary antibodies diluted at 1 :1000. On the second day, the primary antibodies were removed, and the membrane was washed 3 x 10 minutes in TBST and incubated in secondary antibodies for 45 min at room temperature. The membrane was washed again and imaged using ODYSSEY (Li-COR) to measure the signal intensity from the IRDye 800CW goat anti-mouse secondary antibodies (LICOR). The data was analyzed for the intensity of each protein band, including total ERK, and phosphorylated ERK (pERK).
[00686] The percentage of pERK was determined by dividing the signal output of pERK by the signal output of total ERK. Percent inhibition of phosphorylation of ERK in compound- treated samples compared to vehicle-treated control samples was determined by subtracting compound-treated pERK signal from vehicle-treated pERK signal then dividing by the vehicle- treated pERK signal and multiplying by 100.
[00687] Although the present invention has been described in detail with preferred embodiments, those of ordinary skill in the art should understand that modifications, variations, and equivalent replacements made to the present invention within the scope of the present invention belong to the protection of the present invention.
[00688] Applicant’s disclosure is described herein in preferred embodiments with reference to the Figures, in which like numbers represent the same or similar elements. Reference throughout this specification to “one embodiment,” “an embodiment,” or similar language means that a particular feature, structure, or characteristic described in connection with the embodiment is included in at least one embodiment of the present invention. Thus, appearances of the phrases “in one embodiment,” “in an embodiment,” and similar language throughout this specification may, but do not necessarily, all refer to the same embodiment.
[00689] The described features, structures, or characteristics of Applicant’s disclosure may be combined in any suitable manner in one or more embodiments. In the description, herein, numerous specific details are recited to provide a thorough understanding of embodiments of the invention. One skilled in the relevant art will recognize, however, that Applicant’s composition and/or method may be practiced without one or more of the specific details, or with other methods, components, materials, and so forth. In other instances, well-known structures, materials, or operations are not shown or described in detail to avoid obscuring aspects of the disclosure.
[00690] In this specification and the appended claims, the singular forms "a," "an," and "the" include plural reference, unless the context clearly dictates otherwise.
[00691] Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art. Although any methods and materials similar or equivalent to those described herein can also be used in the practice or testing of the present disclosure, the preferred methods and materials are now described. Methods recited herein may be carried out in any order that is logically possible, in addition to a particular order disclosed.
Incorporation by Reference
[00692] References and citations to other documents, such as patents, patent applications, patent publications, journals, books, papers, web contents, have been made in this disclosure. All such documents are hereby incorporated herein by reference in their entirety for all purposes. Any material, or portion thereof, that is said to be incorporated by reference herein, but which conflicts with existing definitions, statements, or other disclosure material explicitly set forth herein is only incorporated to the extent that no conflict arises between that incorporated material and the present disclosure material. In the event of a conflict, the conflict is to be resolved in favor of the present disclosure as the preferred disclosure.
Equivalents [00693] The representative examples are intended to help illustrate the invention, and are not intended to, nor should they be construed to, limit the scope of the invention. Indeed, various modifications of the invention and many further embodiments thereof, in addition to those shown and described herein, will become apparent to those skilled in the art from the full contents of this document, including the examples and the references to the scientific and patent literature included herein. The examples contain important additional information, exemplification and guidance that can be adapted to the practice of this invention in its various embodiments and equivalents thereof.

Claims

What is claimed is: CLAIMS
1. A compound having the structural Formula I:
Figure imgf000472_0001
or a pharmaceutically acceptable form or an isotope derivative thereof, wherein
R1 is XR11 or NR12R13, wherein X is O, S or absent, R11 is (CH2)iR14, and z is an integer selected from 0-6, wherein (CH2) is optionally substituted;
R2 is an unsubstituted or substituted 6- to 10-membered unsaturated monocyclic or bicyclic ring, comprising 0-5 heteroatoms selected from N, O and S;
R3 is L-R3 , wherein
L is a single bond or NR(CH2)k, wherein k is an integer selected from 0-3; and
R3 is an unsubstituted or substituted, 3- to 10-membered saturated or unsaturated monocyclic, bicyclic or bridged ring moiety that comprises 0-5 heteroatoms selected from N, O and S; each of R4 and R5 is independently selected from the group consisting of H, halogen, CN, OH, unsubstituted or substituted Ci-4 alkyl, unsubstituted or substituted Ci-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R”, C(O)OR, unsubstituted or substituted 3- to 8-membered carbocycle, and unsubstituted or substituted 3- to 8- membered heterocycle, provided that (a) R4 and R5 are not H at the same time, and (b) where R4 is H, R5 is an unsubstituted or substituted 3- to 8-membered carbocycle, or unsubstituted or substituted 3- to 8-membered heterocycle; each of R12 and R13 is independently selected from the group consisting of H, unsubstituted or substituted Ci-s alkyl, unsubstituted or substituted carbocyclic ring, and unsubstituted or substituted heterocyclic ring; or R12 and R13, together with the N atom they are bound to, are joined to form an unsubstituted or substituted heterocyclic or heteroaryl ring;
R14 is selected from the group consisting of H, halogen, CN, OH, NO2, unsubstituted or substituted C1-6 alkyl, NRR’, C(O)NRR’, NRC(O)R”, SO2NRR’, NR- SO2R’, NRC(O)NRR’, C(O)CH2-aryl, C(O)OCH2-aryl, NRC(O)OCH2-phenyl, C(O)R”, OC(O)R”, C(O)OR, unsubstituted or substituted 3- to 6-membered carbocyclic ring, unsubstituted or substituted 4- to 6-membered heterocyclic ring; unsubstituted or substituted aryl, and unsubstituted or substituted heteroaryl; and each of R and R’ is independently selected from H, unsubstituted or substituted C1-4 alkyl, or unsubstituted or substituted 4- to 6-membered carbocyclic ring, or where R and R’ are attached to the same N atom, together form an unsubstituted or substituted 4- to 6-membered heterocyclic ring; and
R” is H, unsubstituted or substituted C1-4 alkoxy, unsubstituted or substituted C1.4 alkyl, or unsubstituted or substituted 4- to 6-membered carbocyclic ring. The compound of claim 1, wherein at least one of R4 and R5 is not H. The compound of claim 2, wherein neither R4 nor R5 is H. The compound of any one of claims 1 -3, wherein R4 is halogen, CN, OH, unsubstituted or substituted C1-4 alkyl, unsubstituted or substituted C1-4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R” or C(O)OR. The compound of claim any one of 1-5, wherein R5 is halogen, CN, OH, unsubstituted or substituted C1-4 alkyl, unsubstituted or substituted C1.4 alkoxy, NO2, NRR’, C(O)NRR’, NRC(O)R”, C(O)R”, OC(O)R” or C(O)OR. The compound of any one of claims 1-5, wherein R5 is an unsubstituted or substituted 3- to 8-membered carbocycle. The compound of any one of claims 1-5, wherein R5 is an unsubstituted or substituted 3- to 8-membered heterocycle. The compound of claim 1, wherein R4 is H and R5 is an unsubstituted or substituted 3- to 6-membered carbocycle. The compound of claim 1, wherein R4 is H and R5 is an unsubstituted or substituted 4- to 7-membered heterocycle. The compound of any one of claims 1-3, wherein one of R4 and R5 is a halogen and the other is selected from halogen, CN, methyl and ethyl The compound of any one of claims 1-3, wherein one of R4 and R5 is a halogen and the other is selected from OH, OCH3, C(O)NH2 and C(O)NHCH3 The compound of any one of claims 1-3, wherein one of R4 and R5 is halogen, CN, methyl and ethyl and the other is an unsubstituted or substituted 3- to 8-membered carbocycle. The compound of any one of claims 1-3, wherein one of R4 and R5 is halogen, CN, methyl and ethyl and the other is an unsubstituted or substituted 3- to 8-membered heterocycle. The compound of any one of claims 1-3, wherein one of R4 and R5 is unsubstituted or substituted cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl or cycloheptyl. The compound of any one of claims 1-3, wherein one of R4 and R5 is unsubstituted or substituted tetrahydrofuran, tetrahydropyran, cyclic sulfone, cyclic sulfonamide, cyclic amide, cyclic carbamate, azetidine, pyrrolidine, piperidine, pyrazole, imidazole, 1, 3- oxazole, 1,2-oxazole, 1,3 -thiazole, 1, 2,4-triazole, 1,2, 3 -triazole, 1. 3,4-oxadiazole, 1,3,4- thiadiazole, furan, pyridine, pyrimidine, pyridazine, pyrazine, or triazine. The compound of any one of claims 1 -15, wherein R1 is X(CH2)iR14, wherein X is O. The compound of claim 16, wherein R14 is a C3-6 carbocyclic ring substituted with 0-5 R15, wherein each R15 is independently selected from D, halo, C1-3 alkyl optionally substituted with one or more of halo, OH, NRR’, CN, CONRR’ or SO2NRR’. The compound of claim 16 or 17, wherein z is 1. The compound of any one of claims 16-18, wherein R14 is C3-4 cycloalkyl ring substituted with 0-5 R15. The compound of claim 19, wherein R1 has the structure:
Figure imgf000474_0001
wherein Rx is OH, halo, NRR’, CN, CONRR’ or SO2NRR’ The compound of claim 20, wherein R15 is F, m is 0-2, and Rx is CH2OH. The compound of claim 19, wherein R1 has the structure:
Figure imgf000475_0001
wherein Rx is OH, halo, NRR’, CN, CONRR’ or SO2NRR’ The compound of claim 22, wherein R15 is F, m is 0-2, and CH2OH. The compound of any one of claims 1-15, wherein R1 is NR12R13. The compound of any one of claims 1-15, wherein X is absent and R1 is (CH2)iR14. The compound of claim 25, wherein R14 is NRR’ . The compound of any one of claims 1-26, wherein R14 comprises one or more of amino, amide, sulfonamide, and carboxylic ester groups. The compound of any one of claims 1-26, wherein R14 is a mono- or bicyclic, unsubstituted or substituted C4-10 heterocyclic ring. The compound of claim 28, wherein R14 is a monocyclic, unsubstituted or substituted C4-7 heterocyclic ring. The compound of claim 28, wherein R14 is a bicyclic, unsubstituted or substituted Ce-io heterocyclic ring. The compound of any one of claims 1-26, wherein R14 has the structure of:
Figure imgf000475_0002
wherein
Ring E is a 4- to 7-membered unsubstituted or substituted monocyclic or bicyclic carbocyclic of heterocyclic ring;
W is O, S, N, NR, C(O), S(O)2, NHC(O), C(O)NH, OC(O), C(O)O, S(O)2NH, or
NHS(O)2; and R15 is selected from the group consisting of halogen, OH, CN, Ci-6 alkyl, Ci-6 alkoxy, =CRR’, NRR’, C(O)NRR’, NRC(O)R”, NRC(O)NRR’, C(O)R, C(O)OR, S(O)2NRR’, or NRS(O)2R, S(O)2NRR’ and NRS(O)2NRR’ .
The compound of any one of claims 1-15, wherein R1 has the structure of:
Figure imgf000476_0001
wherein each of Ring C and Ring D is a 4- to 7-memebered heterocyclic ring;
X is O or S; each of R15 and R16 is independently selected from the group consisting of halogen, OH, CN, NRR’, =CRR’, Ci-6 alkyl and Ci-6 alkoxy; i is 0, 1, 2, 3 or 4; and each of m and n is independently 0, 1, 2 or 3.
The compound of claim 32, wherein R1 has the structure of:
Figure imgf000476_0002
wherein each of T1 and T2 is independently CR17R18, C=CR17R18, NR19, O, S or S(O)2; each of R17 and R18 is independently selected from the group consisting of: H, halo, Ci -6 alkyl, and Ci-6 alkoxy;
R19 is selected from the group consisting of: H, Ci-6 alkyl, and Ci-6 alkoxy; each of g, p and q is independently 0, 1, 2 or 3, provided that if one of f and p is 0, the other is not 0 and if one of g and g is 0, the other is not 0; and each of m and n is independently 0, 1, 2 or 3. The compound of claim 33, wherein each of T1 and T2 is CRl yR18, each of g,p and q is
1, with R1 having the structure of:
Figure imgf000477_0001
The compound of claim 33, wherein T1 is C=CR17R18 and T2 is CR17R18, each of g,p and q is 1, with R1 having the structure of:
Figure imgf000477_0002
wherein each of R17 and R18 is independently H or halo.
The compound of claim 33-35, having a chirality as shown below:
Figure imgf000477_0003
The compound of claim 36, wherein m is 0, n is 1, and R16 is F. The compound of any one of claims 32-37, wherein X is O. The compound of claim 38, wherein z is 1. The compound of any one of claims 1-39, wherein R2 is an unsubstituted or substituted 6- to 10-membered unsaturated bicyclic ring, comprising 0-5 heteroatoms selected from N, O and S. The compound of claim 40, wherein R2 has the structure of:
Figure imgf000478_0001
wherein
Ring A is a 6-membered aryl or heteroaryl ring with 0-2 N atoms;
Ring B is a 5- or 6-membered aryl or heteroaryl with 0-3 heteroatoms selected from N, O and S; each of R21 and R22 is independently selected from the group consisting of halogen, OH, CN, NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, (CH2)XNRR’, (CH2)XC(=O)NRR’, (CH2)XOC(=O)R, (CH2)XOC(=O)OR; each of m and n is independently 0, 1, 2 or 3; and each x is independently 0, 1 or 2. The compound of claim 41, wherein R2 is:
Figure imgf000478_0002
wherein each of Z1 and Z2 is independently selected from CH and N. The compound of claim 42, wherein each of Z1 and Z2 is CH. The compound of claim 42, wherein Z1 is CH and Z2 is N. The compound of claim 42, wherein Z1 is Z and Z2 is CH. The compound of claim 42, wherein each of Z1 and Z2 is N. The compound of claim 41, wherein R2 is:
Figure imgf000478_0003
wherein each of Z1 and Z2 is independently selected from CH and N; and each of Z3, Z4 and Z5 is independently selected from CR”, N, NR, O or S, provided that Ring B remains an aromatic ring, wherein R is H or a C1-4 alkyl. The compound of claim 47, wherein each of Z1 and Z2 is CH. The compound of claim 47, wherein Z1 is CH and Z2 is N. The compound of claim 47, wherein Z1 is Z and Z2 is CH. The compound of claim 47, wherein each of Z1 and Z2 is N. The compound of any one of claims 47-51, wherein each of Z3, Z4 and Z5 is not a heteroatom. The compound of any one of claims 37-51, wherein at least one of Z3, Z4 and Z5 is a heteroatom. The compound of any one of claims 1-53, wherein L is a single bond. The compound of any one of claims 1-53, wherein L is a single bond and R3 is:
Figure imgf000479_0001
wherein
Y1 is N or CR”;
Y2 is (CH2)j, NR or CH2OCH2;
Y3 is NR, CR”, O or S; each R31 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; each j is independently 0, 1, 2 or 3; and m is 0, 1, 2 or 3. The compound of claim 55, wherein R3 is:
Figure imgf000480_0001
The compound of claim 55 or 56, wherein Y3 is NR. The compound of claim 55 or 56, wherein Y3 is CR”. The compound of claim 55 or 56, wherein Y3 is O or S. The compound of any one of claims 57-59, wherein 7 is 2. The compound of claim 55, wherein R3 is:
Figure imgf000480_0002
The compound of claim 61, wherein Y3 is NR. The compound of claim 61, wherein Y3 is CR”. The compound of any one of claims 56-63, wherein m is 0. The compound of any one of claims 56-63, wherein m is 1. The compound of any one of claims 1-53, wherein L is a single bond and R3 is an unsubstituted or substituted, 3- to 10-membered saturated or unsaturated monocyclic that comprises 0-3 heteroatoms selected from N, O and S The compound of claim 66, wherein R3 is an unsubstituted or substituted, 6-membered saturated or unsaturated monocyclic that comprises 1-3 heteroatoms selected from N, O and S. The compound of claim 67, wherein R3 has the structure:
Figure imgf000480_0003
wherein
Ring G is a 5- to 7-membered heterocyclic ring with 1 -3 heteroatoms selected from N, O and S; each R32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; and m is 0, 1, 2 or 3. The compound of claim 68, wherein Ring G is 6-membered. The compound of claim 66, wherein R3 is an unsubstituted or substituted, 10- to 12- membered saturated or unsaturated bicyclic that comprises 1-5 heteroatoms selected from N, O and S. The compound of claim 70 wherein R3 has the structure:
Figure imgf000481_0001
wherein
Rings F and H together form a hetero-bicyclic ring; each R32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; and m is 0, 1, 2 or 3. The compound of claim 71, wherein Ring F is 7-membered and Ring H is 5-membered. The compound of any one of claims 1-53, wherein L is NR(CH2)k and R3 is NR(CH2)kR3 . The compound of claim 73, wherein k is 0. The compound of claim 73, wherein k is 1. The compound of any one of claims 73-75, wherein R3 is an unsubstituted or substituted, 3- to 6-membered monocyclic ring moiety that comprises 0-3 heteroatoms selected from N, O and S. The compound of claim 76, wherein R3 has the structure:
Figure imgf000482_0001
wherein
Ring J is a 5- to 7-membered carbocyclic or heterocyclic ring with 0-3 heteroatoms selected from N, O and S; each R32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; and m is 0, 1, 2 or 3. The compound of claim 77, wherein Ring J is 6-membered. The compound of any one of claims 1-15, having the structural formula:
Figure imgf000482_0002
The compound of any one of claims 1-15, having the structural formula:
Figure imgf000482_0003
wherein
Ring K is a C3-4 cycloalkyl;
Rx is OH, halo, NRR’, CN, CONRR’ or SO2NRR’; and m is 0, 1, 2 or 3. The compound of any one of claims 1 -15, having the structural formula:
Figure imgf000483_0001
wherein
Rings F and H together form a hetero-bicyclic ring; each R32 is independently selected from the group consisting of halogen, OH, NRR’, C(O)NRR’, unsubstituted or substituted Ci-6 alkyl, and unsubstituted or substituted Ci-6 alkoxy, NRC(O)R”, NRC(O)NRR’, C(O)R”, and C(O)OR, S(O)2NRR’, NRS(O)2R and NRS(O)2NRR’; and m is 0, 1, 2 or 3. The compound of any one of claims 1-15, having the structural formula:
Figure imgf000483_0002
wherein
R3 is an unsubstituted or substituted, 3- to 6-membered monocyclic ring moiety that comprises 0-3 heteroatoms selected from N, O and S; and
AHs 0, 1 or 2. The compound of claim 1, selected from Table 1. The compound of any of claims 1-83, having one or more deuterium atoms in place of hydrogen. The compound of any of claims 1 -83, having one deuterium atom in place of a hydrogen atom. A pro-drug of a compound according to any of claims 1-85. The pro-drug of claim 86, comprising an ester, a carbonate and/or a carbamate moiety. The pro-drug of claim 86, wherein one or both of R2 and R3 comprises an ester, a carbonate and/or a carbamate moiety. The pro-drug of any one of claims 86-88, wherein the ester, carbonate and carbamate moi eties are selected from:
Figure imgf000484_0001
R or R’ = H or substituted or unsubstituted Ci-6 alkyl or substituted or unsubstituted 3- to 6-membered carbocycle. The pro-drug of any one of claims 86-89, wherein the ester, carbonate and carbamate moi eties are selected from:
Figure imgf000484_0002
A pharmaceutical composition comprising a compound according to any one of claims 1- 90 and a pharmaceutically acceptable excipient, carrier, or diluent. The pharmaceutical composition of claim 91, being suitable for oral administration. A unit dosage form comprising a pharmaceutical composition according to claim 91 or 92. The unit dosage form of claim 93, being in the form of a tablet or capsule. A method for inhibiting cell proliferation in vitro or in vivo, comprising contacting a cell with an effective amount of a compound according to any one of claims 1-90. A method for inhibiting KRas(G12D) activity in a cell, comprising contacting the cell with a compound according to any one of claims 1-90. A method for treating a disease or disorder mediated by a Ras mutant protein, comprising administering to a subject in need thereof a therapeutically effective amount of the compound according to any one of claims 1-90. A method for treating or reducing cancer, or a related disease or disorder, comprising administering to a subject in need thereof a therapeutically effective amount of the compound according to any one of claims 1-90. The method of claim 98, wherein the cancer is selected from the group consisting of carcinoma, squamous carcinoma, adenocarcinoma, sarcoma, leukemia, neuroma, melanoma, and lymphoma. The method of claim 98 or 99, wherein the cancer is selected from the group consisting of pancreatic cancer, colorectal cancer, lung cancer, endometrial cancer, appendix cancer, cholangiocarcinoma, bladder urothelial cancer, ovarian cancer, gastric cancer, breast cancer, bile duct cancer, and a hematologic malignancy. The method of any one of claims 95-100, wherein the subject has a mutation of KRAS, HRAS and/or NRAS. The method of any one of claims 95-101, wherein the subject being treated is further administered one or more of chemotherapy, radiotherapy, targeted therapy, immunotherapy, and hormonal therapy. Use of the compound according to any one of claims 1-90, and a pharmaceutically acceptable excipient, carrier, or diluent, in preparation of a medicament for treating a disease or disorder. The use of claim 103, wherein the disease or disorder is cancer. The use of claim 104, wherein the cancer is selected from the group consisting of carcinoma, squamous carcinoma, adenocarcinoma, sarcoma, leukemia, neuroma, melanoma, and lymphoma. The use of claim 105, wherein the cancer is selected from the group consisting of pancreatic cancer, colorectal cancer, lung cancer, endometrial cancer, appendix cancer, cholangiocarcinoma, bladder urothelial cancer, ovarian cancer, gastric cancer, breast cancer, bile duct cancer, and a hematologic malignancy.
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