WO2023104173A1 - Autism classifier construction method and system based on functional magnetic resonance images of human brains - Google Patents
Autism classifier construction method and system based on functional magnetic resonance images of human brains Download PDFInfo
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- the invention relates to the field of medical image classification, in particular to a method and system for constructing an autism classifier based on human brain functional magnetic resonance images.
- ASD Autism spectrum disorder
- rs-fMRI functional magnetic resonance
- the framework is based on graph convolutional neural network (GCN), and achieved a classification accuracy of 70.4% on the ABIDE dataset.
- GCN graph convolutional neural network
- Zhi-An Huang et al. [4] achieved a prediction accuracy of 76.4% on the ABIDE I dataset using a deep belief network (DBN).
- DNN deep belief network
- feature selection methods are often combined with machine learning to achieve better classification performance.
- the main challenge of the current functional magnetic resonance imaging of the brain is that the preprocessed data contains a large amount of redundant information, which will lead to the deterioration of the performance of the classification model.
- the accuracy of the machine learning classification model based on functional magnetic resonance imaging still needs to be improved.
- the current classification model cannot flexibly adjust the sensitivity and specificity, making it unable to adapt to some specific practical needs.
- the purpose of the present invention is to provide a method and system for constructing an autism classifier based on functional magnetic resonance images of the human brain to overcome the defects of the prior art.
- the present invention can select useful features that are more refined than conventional methods, and It has high precision, sensitivity, specificity and training speed.
- the present invention adopts the following technical solutions:
- a method for constructing an autism classifier based on functional magnetic resonance images of the human brain including:
- the feature vectors are obtained by preprocessing the brain fMRI images of normal subjects and autistic subjects;
- the training set is used to pre-train the variational autoencoder. After the pre-training, the encoder parameters of the variational autoencoder are transferred to the multi-layer perceptron, and the training set is used to perform supervised training on the multi-layer perceptron. The parameters of the multi-layer perceptron are fine-tuned, and after each round of training, the verification set is used for evaluation until the training reaches the set number of rounds, and the multi-layer perceptron with fine-tuned parameters is used as an autism classifier.
- the process of preprocessing the brain functional magnetic resonance images of normal subjects and autistic subjects to obtain feature vectors is specifically: based on the time series extracted from human brain functional magnetic resonance images, calculate the time series of interest Functional connections between regions, all functional connections form a feature vector, and each functional connection is used as a feature of the feature vector;
- the specific calculation method of the functional connection is: calculating the Pearson correlation coefficients of the time series corresponding to all pairwise different regions of interest.
- the feature selection based on the gradient distribution curve difference is performed on each feature of the feature vector to obtain the salient features, specifically:
- the features whose DSDC score is greater than the preset threshold are selected as salient features, and the features whose DSDC score is less than or equal to the preset threshold are discarded.
- the DSDC score is calculated for each feature in the feature vector, specifically:
- the DSDC score of a feature is calculated by the following formula:
- b 0 and b 1 are the lower bound and upper bound of the value of the feature; ⁇ is the length of the subinterval; i represents the i-th subinterval, and n i + and n i - are in the [i- ⁇ , i) interval is the number of autistic subjects and normal subjects, N + and N – is the number of autistic subjects and normal subjects in the training set.
- the supervised training of the multi-layer perceptron by using the training set is specifically training without constraints, training with sensitivity constraints, or training with specificity constraints;
- the verification set When using unconstrained training, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set is improved, the parameters that have been trained in this round are saved, otherwise they are not saved;
- the verification set When training with sensitivity constraints, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set increases, the difference between the evaluation sensitivity of the verification set and the evaluation specificity of the verification set increases, and the improvement value is less than the preset value , then save the parameters after this round of training, otherwise not save;
- the verification set When training with specificity constraints, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set is improved, the difference between the evaluation specificity of the verification set and the evaluation sensitivity of the verification set is increased, and the improvement value is less than the preset value, save the parameters after this round of training, otherwise do not save.
- An autism classifier construction system based on functional magnetic resonance images of the human brain including a preprocessing module, a training set acquisition module and a training module, in which:
- Preprocessing module used to preprocess the brain functional magnetic resonance images of normal subjects and autistic subjects to obtain feature vectors
- Training set acquisition module used to perform feature selection based on the difference of the gradient distribution curve for each feature of the feature vector, to obtain salient features, to form new feature vectors with the obtained salient features, and to use the new feature vectors of all subjects as Training samples, the training samples include a training set and a verification set;
- Training module It is used to pre-train the variational autoencoder using the training set. After the pre-training is completed, the encoder parameters of the variational autoencoder are transferred to the multi-layer perceptron, and the multi-layer perceptron is effectively implemented using the training set. Supervised training, fine-tuning the parameters of the multi-layer perceptron, and using the verification set for evaluation after each round of training, until the training reaches the set number of rounds, the multi-layer perceptron with parameter fine-tuning is used as an autism classification device.
- the process of preprocessing the brain functional magnetic resonance images of normal subjects and autistic subjects to obtain feature vectors is specifically: based on the time series extracted from human brain functional magnetic resonance images, calculate the time series of interest Functional connections between regions, all functional connections form a feature vector, and each functional connection is used as a feature of the feature vector;
- the specific calculation method of the functional connection is: calculating the Pearson correlation coefficients of the time series corresponding to all pairwise different regions of interest.
- the feature selection based on the gradient distribution curve difference is carried out to each feature of the feature vector to obtain the salient features, specifically:
- the features whose DSDC score is greater than the preset threshold are selected as salient features, and the features whose DSDC score is less than or equal to the preset threshold are discarded.
- the DSDC score is calculated for each feature in the feature vector, specifically:
- the DSDC score of a feature is calculated by the following formula:
- b 0 and b 1 are the lower bound and upper bound of the value of the feature; ⁇ is the length of the subinterval; i represents the i-th subinterval, and n i + and n i - are in the [i- ⁇ , i) interval is the number of autistic subjects and normal subjects, N + and N – is the number of autistic subjects and normal subjects in the training set.
- the supervised training of the multi-layer perceptron by using the training set is specifically training without constraints, training with sensitivity constraints, or training with specificity constraints;
- the verification set When using unconstrained training, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set is improved, the parameters that have been trained in this round are saved, otherwise they are not saved;
- the verification set When training with sensitivity constraints, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set increases, the difference between the evaluation sensitivity of the verification set and the evaluation specificity of the verification set increases, and the improvement value is less than the preset value , then save the parameters after this round of training, otherwise not save;
- the verification set When training with specificity constraints, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set is improved, the difference between the evaluation specificity of the verification set and the evaluation sensitivity of the verification set is increased, and the improvement value is less than the preset value, save the parameters after this round of training, otherwise do not save.
- the present invention has the following beneficial technical effects:
- the method of the present invention adopts the feature selection method based on the step distribution curve difference (DSDC) to select more refined useful features than the conventional methods; secondly, the accuracy, sensitivity, specificity and training speed of the classifier constructed by the present invention are all the same. It exceeds the state-of-the-art experimental results in previous studies based on the same data set; finally, the present invention can flexibly adjust the sensitivity and specificity of the classifier by imposing constraints during the training process, enabling the model to use different practical application requirements.
- DSDC step distribution curve difference
- Fig. 1 is a schematic flow chart of the method of the present invention.
- the invention provides a method for constructing an autism classifier based on functional magnetic resonance images of the human brain, which specifically includes:
- the first step is to preprocess the brain fMRI images of 455 normal subjects and 477 autistic subjects to obtain feature vectors, specifically: based on time series calculations extracted from human brain fMRI images Functional connections between regions of interest, each functional connection is used as a feature, and all functional connections form a feature vector.
- the specific calculation method of functional connectivity is to calculate the Pearson correlation coefficient of the time series corresponding to all two different regions of interest.
- a feature selection method based on the difference of the gradient distribution curve is performed. For each feature, calculate the DSDC score of the feature: first divide the range of features in all feature vectors into 20 equal-length subintervals, then count the number of samples in each subinterval, and divide the number by Normalize with the total number of samples belonging to the category, and generate a ladder-shaped distribution curve according to the normalized value of the number of samples in each interval. This process is equivalent to a coarse-grained fitting of the original distribution curve of the feature, that is, the DSDC score of the feature is calculated by the following formula.
- b 0 and b 1 are the lower and upper bounds of the features; ⁇ is the length of the sub-interval; i represents the i-th sub-interval, and the value of i is an integer within the range of [1,20]; n i + and n i - the number of autistic subjects and normal subjects falling in the [i- ⁇ ,i) interval, N + and N – the number of autistic subjects and normal subjects in the training set .
- the present invention pre-sets a filtering threshold, selects features with DSDC scores greater than the threshold as salient features, discards features with DSDC scores less than or equal to the threshold, and uses new feature vectors of all subjects as training samples, the training samples Includes training set and validation set.
- the present invention simplifies the encoder structure of the variational autoencoder, uses the same neural network to generate two parameters of the potential space, and uses the training set to pre-train the variational autoencoder.
- the encoder parameters of the variational autoencoder are transferred to the multi-layer perceptron, and the training set is used for supervised training of the multi-layer perceptron, and the parameters of the multi-layer perceptron are fine-tuned.
- the verification set is used for evaluation until the training reaches the set number of rounds, and the multi-layer perceptron with fine-tuned parameters is used as an autism classifier for autism classification.
- the present invention designs two constraint conditions (sensitivity constraint and specificity constraint) as options. In the training process of multi-layer perceptron, adding sensitivity constraints and specificity constraints can greatly improve sensitivity and specificity at the cost of a small amount of accuracy reduction.
- the main function of sensitivity constraints and specificity constraints is to determine whether the parameters obtained by the classifier after each round of training are saved.
- one-tenth of the data in the training set is taken out as a verification set, and the verification set is mainly used to evaluate the training model of each round without participating in the training process.
- the parameters after this round of training will be saved, otherwise they will not be saved.
- sensitivity constraints after a certain round of training, if the evaluation accuracy of the verification set is improved, and the difference between the evaluation sensitivity of the verification set and the evaluation specificity of the verification set is improved and less than 0.3, the parameters after this round of training will be saved, otherwise not saved.
- the present invention also provides an autism classifier construction system based on functional magnetic resonance images of the human brain, including a preprocessing module, a training set acquisition module and a training module, wherein:
- Preprocessing module used to preprocess the brain functional magnetic resonance images of normal subjects and autistic subjects to obtain feature vectors
- Training set acquisition module used to perform a feature selection method based on the difference of gradient distribution curves for each feature of the feature vector to obtain salient features, form the obtained salient features into a new feature vector, and combine the new feature vectors of all subjects
- the training sample includes a training set and a verification set;
- Training module It is used to pre-train the variational autoencoder using the training set. After the pre-training is completed, the encoder parameters of the variational autoencoder are transferred to the multi-layer perceptron, and the multi-layer perceptron is effectively implemented using the training set. Supervised training, fine-tuning the parameters of the multi-layer perceptron, and using the verification set for evaluation after each round of training, until the training reaches the set number of rounds, the multi-layer perceptron with parameter fine-tuning is used as an autism classification device.
- the embodiments of the present invention may be provided as methods, systems, or computer program products. Accordingly, the present invention can take the form of an entirely hardware embodiment, an entirely software embodiment, or an embodiment combining software and hardware aspects. Furthermore, the present invention may take the form of a computer program product embodied on one or more computer-usable storage media (including but not limited to disk storage, CD-ROM, optical storage, etc.) having computer-usable program code embodied therein.
- computer-usable storage media including but not limited to disk storage, CD-ROM, optical storage, etc.
- These computer program instructions may also be stored in a computer-readable memory capable of directing a computer or other programmable data processing apparatus to operate in a specific manner, such that the instructions stored in the computer-readable memory produce an article of manufacture comprising instruction means, the instructions
- the device realizes the function specified in one or more procedures of the flowchart and/or one or more blocks of the block diagram.
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Abstract
Description
本发明涉及医学影像分类领域,具体涉及一种基于人脑功能磁共振影像的自闭症分类器构建方法及系统。The invention relates to the field of medical image classification, in particular to a method and system for constructing an autism classifier based on human brain functional magnetic resonance images.
自闭症谱系障碍(ASD)是一种常见的复杂神经发育障碍,发生在儿童早期,核心特征是社交和受限的重复性感觉运动行为。传统的基于症状的分类方法不能揭示ASD背后的发病机制,因此往往是不可靠。随着神经影像学的发展,非侵入式脑成像技术成为了研究和揭示ASD一类的神经疾病的有力工具。其中,功能磁共振(rs-fMRI)测量血氧等级相关的变化信号可以帮助临床医生和神经科学家视觉评估大脑的功能特性或属性,已成为ASD早期分类的有力工具。近年来,rs-fMRI与机器学习和深度学习技术相结合用于ASD分类,取得了良好的效果,成为ASD分类最有前途的影像学方法之一。Autism spectrum disorder (ASD) is a common complex neurodevelopmental disorder that occurs in early childhood and is characterized by social interaction and restricted repetitive sensorimotor behaviors. Traditional symptom-based classification methods cannot reveal the underlying pathogenesis of ASD and are therefore often unreliable. With the development of neuroimaging, non-invasive brain imaging technology has become a powerful tool to study and reveal neurological diseases such as ASD. Among them, functional magnetic resonance (rs-fMRI) measurement of blood oxygen level-related change signals can help clinicians and neuroscientists to visually assess the functional characteristics or properties of the brain, and has become a powerful tool for early classification of ASD. In recent years, rs-fMRI combined with machine learning and deep learning techniques for ASD classification has achieved good results and has become one of the most promising imaging methods for ASD classification.
近年来,机器学习(包括深度学习)方法已经被广泛应用于自闭症的分类。近年来,机器学习(包括深度学习)方法已经被广泛应用于细胞图像的预测和研究。Plitt等人 [1]只用支持向量机对ABIDE数据集的自闭症样例和正常人样例进行分类,达到了69%的分类精度。Heinsfeld等人 [2]利用堆叠自编码器(SAE)和全连接神经网络在公共数据集ABIDE I上达到了当时的最高预测精度70%。Parisot等人 [3]提出一个利用成像和非成像信息可用于大规模人群的大脑分析的通用框架,该框架基于图卷积神经网络(GCN),在ABIDE数据集上达到了70.4%的分类精度。Zhi-An Huang等人 [4]利用深度信念网络(DBN)在ABIDE I数据集上达到了76.4%的预测精度。此外,特征选择方法也常常与机器学习相结合使用以得到更好的分类性能。 In recent years, machine learning (including deep learning) methods have been widely used in the classification of autism. In recent years, machine learning (including deep learning) methods have been widely used in the prediction and research of cell images. Plitt et al. [1] only used support vector machines to classify the autism samples and normal samples of the ABIDE dataset, and achieved a classification accuracy of 69%. Heinsfeld et al. [2] used stacked autoencoders (SAE) and fully connected neural networks to achieve the highest prediction accuracy of 70% on the public dataset ABIDE I at that time. Parisot et al. [3] proposed a general framework for brain analysis of large-scale populations using imaging and non-imaging information. The framework is based on graph convolutional neural network (GCN), and achieved a classification accuracy of 70.4% on the ABIDE dataset. . Zhi-An Huang et al. [4] achieved a prediction accuracy of 76.4% on the ABIDE I dataset using a deep belief network (DBN). In addition, feature selection methods are often combined with machine learning to achieve better classification performance.
但是目前的大脑功能磁共振影像的主要挑战在于经过预处理之后的数据含 有大量的冗余信息,这会导致分类模型性能变坏,目前基于功能磁共振影像的机器学习分类模型精度还有待提高,目前的分类模型无法灵活调节灵敏度和特异度,使之不能适应于某些特定的实际需要。However, the main challenge of the current functional magnetic resonance imaging of the brain is that the preprocessed data contains a large amount of redundant information, which will lead to the deterioration of the performance of the classification model. The accuracy of the machine learning classification model based on functional magnetic resonance imaging still needs to be improved. The current classification model cannot flexibly adjust the sensitivity and specificity, making it unable to adapt to some specific practical needs.
1.Plitt,M.,Barnes,K.A.,and Martin,A.(2015).Functional connectivity classification of autism identifies highly predictive brain features but falls short of biomarker standards.YNICL 7,359–366.doi:10.1016/j.nicl.2014.12.0131. Plitt, M., Barnes, K.A., and Martin, A. (2015). Functional connectivity classification of autism identifies highly predictive brain features but falls short of biomarker standards. YNICL 7, 359–366. doi: 10.1016/j .nicl. 2014.12.013
2.Heinsfeld,A.S.;Franco,A.R.;Craddock,R.C.;Buchweitz,A.;Meneguzzi,F.,Identification of autism spectrum disorder using deep learning and the ABIDE dataset.NeuroImage:Clinical 2018,17,16-23.2. Heinsfeld, A.S.; Franco, A.R.; Craddock, R.C.; Buchweitz, A.; Meneguzzi, F., Identification of autism spectrum disorder using deep learning and the ABIDE dataset. NeuroImage: Clinical 2018,17,16-23.
3.Parisot,S.;Ktena,S.I.;Ferrante,E.;Lee,M.;Guerrero,R.;Glocker,B.;Rueckert,D.,Disease prediction using graph convolutional networks:application to autism spectrum disorder and Alzheimer’s disease.Medical image analysis 2018,48,117-130.3. Parisot, S.; Ktena, S.I.; Ferrante, E.; Lee, M.; Guerrero, R.; Glocker, B.; Rueckert, D., Disease prediction using graph convolutional networks: application to autism spectrum disorder and Alzheimer's disease.Medical image analysis 2018,48,117-130.
4.Huang,Z.-A.;Zhu,Z.;Yau,C.H.;Tan,K.C.,Identifying autism spectrum disorder from resting-state fMRI using deep belief network.IEEE Transactions on Neural Networks and Learning Systems 2020.4. Huang, Z.-A.; Zhu, Z.; Yau, C.H.; Tan, K.C., Identifying autism spectrum disorder from resting-state fMRI using deep belief network. IEEE Transactions on Neural Networks and Learning Systems 2020.
发明内容Contents of the invention
本发明的目的在于提供一种基于人脑功能磁共振影像的自闭症分类器构建方法及系统,以克服现有技术的缺陷,本发明能够选出比以往常用方法更精炼的有用特征,且具备较高的精度、灵敏度、特异度和训练速度。The purpose of the present invention is to provide a method and system for constructing an autism classifier based on functional magnetic resonance images of the human brain to overcome the defects of the prior art. The present invention can select useful features that are more refined than conventional methods, and It has high precision, sensitivity, specificity and training speed.
为达到上述目的,本发明采用如下技术方案:To achieve the above object, the present invention adopts the following technical solutions:
基于人脑功能磁共振影像的自闭症分类器构建方法,包括:A method for constructing an autism classifier based on functional magnetic resonance images of the human brain, including:
对正常受试者和自闭症受试者大脑功能磁共振影像进行预处理得到特征向量;The feature vectors are obtained by preprocessing the brain fMRI images of normal subjects and autistic subjects;
对特征向量的每一个特征进行基于梯度分布曲线差异的特征选择,得到显著特征,将所得到显著特征组成新的特征向量,并将所有受试者新的特征向量作为训练样本,所述训练样本包括训练集和验证集;Perform feature selection based on the difference of the gradient distribution curve for each feature of the feature vector to obtain salient features, form the new feature vectors with the obtained salient features, and use the new feature vectors of all subjects as training samples, the training samples Including training set and validation set;
采用训练集对变分自编码器进行预训练,预训练结束后,将变分自编码器的编码器参数迁移至多层感知机,并采用训练集对多层感知机进行有监督的训练,对多层感知机的参数进行微调,并在每一轮训练后采用验证集进行评估,直至训练至设定的轮数,将经过参数微调的多层感知机作为自闭症分类器。The training set is used to pre-train the variational autoencoder. After the pre-training, the encoder parameters of the variational autoencoder are transferred to the multi-layer perceptron, and the training set is used to perform supervised training on the multi-layer perceptron. The parameters of the multi-layer perceptron are fine-tuned, and after each round of training, the verification set is used for evaluation until the training reaches the set number of rounds, and the multi-layer perceptron with fine-tuned parameters is used as an autism classifier.
进一步地,所述对正常受试者和自闭症受试者大脑功能磁共振影像进行预处理得到特征向量的过程具体为:基于从人脑功能磁共振影像中提取出的时间序列计算感兴趣区域之间功能连接,所有功能连接组成一个特征向量,每个功能连接作为特征向量的一个特征;Further, the process of preprocessing the brain functional magnetic resonance images of normal subjects and autistic subjects to obtain feature vectors is specifically: based on the time series extracted from human brain functional magnetic resonance images, calculate the time series of interest Functional connections between regions, all functional connections form a feature vector, and each functional connection is used as a feature of the feature vector;
所述功能连接的具体计算方法为:计算所有两两不同的感兴趣区域所对应的时间序列的皮尔森相关系数。The specific calculation method of the functional connection is: calculating the Pearson correlation coefficients of the time series corresponding to all pairwise different regions of interest.
进一步地,所述对特征向量的每一个特征进行基于梯度分布曲线差异的特征选择,得到显著特征,具体为:Further, the feature selection based on the gradient distribution curve difference is performed on each feature of the feature vector to obtain the salient features, specifically:
针对特征向量中每一个特征,计算DSDC分数;For each feature in the feature vector, calculate the DSDC score;
将DSDC分数大于预设阈值的特征选为显著特征,并丢弃DSDC分数小于等于预设阈值的特征。The features whose DSDC score is greater than the preset threshold are selected as salient features, and the features whose DSDC score is less than or equal to the preset threshold are discarded.
进一步地,所述针对特征向量中每一个特征,计算DSDC分数,具体为:Further, the DSDC score is calculated for each feature in the feature vector, specifically:
将所有特征向量中的特征所在范围划分为若干个等长的子区间;Divide the range of features in all feature vectors into several equal-length subintervals;
通过如下公式计算特征的DSDC分数:The DSDC score of a feature is calculated by the following formula:
式中,b 0和b 1为特征的取值下界和上界;δ为子区间的长度;i代表第i个子区间,n i +和n i -为落在[i-δ,i)区间的自闭症受试者和正常受试者的数量,N +和N –为训练集中自闭症受试者和正常受试者的数量。 In the formula, b 0 and b 1 are the lower bound and upper bound of the value of the feature; δ is the length of the subinterval; i represents the i-th subinterval, and n i + and n i - are in the [i-δ, i) interval is the number of autistic subjects and normal subjects, N + and N – is the number of autistic subjects and normal subjects in the training set.
进一步地,所述采用训练集对多层感知机进行有监督的训练具体为无约束条件训练、使用灵敏度约束条件训练或使用特异度约束条件训练;Further, the supervised training of the multi-layer perceptron by using the training set is specifically training without constraints, training with sensitivity constraints, or training with specificity constraints;
当采用无约束条件训练时,在每一轮训练后采用验证集进行评估,如果验 证集的评估精度提高,则保存经过该轮训练的参数,否则不保存;When using unconstrained training, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set is improved, the parameters that have been trained in this round are saved, otherwise they are not saved;
当采用灵敏度约束条件训练时,在每一轮训练后采用验证集进行评估,如果验证集的评估精度提高、验证集的评估灵敏度和验证集的评估特异度之差提高且提高值小于预设值,则保存经过该轮训练的参数,否则不保存;When training with sensitivity constraints, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set increases, the difference between the evaluation sensitivity of the verification set and the evaluation specificity of the verification set increases, and the improvement value is less than the preset value , then save the parameters after this round of training, otherwise not save;
当采用特异度约束条件训练时,在每一轮训练后采用验证集进行评估,如果验证集的评估精度提高、验证集的评估特异度和验证集的评估灵敏度之差提高且提高值小于预设值,则保存经过该轮训练的参数,否则不保存。When training with specificity constraints, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set is improved, the difference between the evaluation specificity of the verification set and the evaluation sensitivity of the verification set is increased, and the improvement value is less than the preset value, save the parameters after this round of training, otherwise do not save.
基于人脑功能磁共振影像的自闭症分类器构建系统,包括预处理模块、训练集获取模块和训练模块,其中:An autism classifier construction system based on functional magnetic resonance images of the human brain, including a preprocessing module, a training set acquisition module and a training module, in which:
预处理模块:用于对正常受试者和自闭症受试者大脑功能磁共振影像进行预处理得到特征向量;Preprocessing module: used to preprocess the brain functional magnetic resonance images of normal subjects and autistic subjects to obtain feature vectors;
训练集获取模块:用于对特征向量的每一个特征进行基于梯度分布曲线差异的特征选择,得到显著特征,将所得到显著特征组成新的特征向量,并将所有受试者新的特征向量作为训练样本,所述训练样本包括训练集和验证集;Training set acquisition module: used to perform feature selection based on the difference of the gradient distribution curve for each feature of the feature vector, to obtain salient features, to form new feature vectors with the obtained salient features, and to use the new feature vectors of all subjects as Training samples, the training samples include a training set and a verification set;
训练模块:用于采用训练集对变分自编码器进行预训练,预训练结束后,将变分自编码器的编码器参数迁移至多层感知机,并采用训练集对多层感知机进行有监督的训练,对多层感知机的参数进行微调,并在每一轮训练后采用验证集进行评估,直至训练至设定的轮数,将经过参数微调的多层感知机作为自闭症分类器。Training module: It is used to pre-train the variational autoencoder using the training set. After the pre-training is completed, the encoder parameters of the variational autoencoder are transferred to the multi-layer perceptron, and the multi-layer perceptron is effectively implemented using the training set. Supervised training, fine-tuning the parameters of the multi-layer perceptron, and using the verification set for evaluation after each round of training, until the training reaches the set number of rounds, the multi-layer perceptron with parameter fine-tuning is used as an autism classification device.
进一步地,所述对正常受试者和自闭症受试者大脑功能磁共振影像进行预处理得到特征向量的过程具体为:基于从人脑功能磁共振影像中提取出的时间序列计算感兴趣区域之间功能连接,所有功能连接组成一个特征向量,每个功能连接作为特征向量的一个特征;Further, the process of preprocessing the brain functional magnetic resonance images of normal subjects and autistic subjects to obtain feature vectors is specifically: based on the time series extracted from human brain functional magnetic resonance images, calculate the time series of interest Functional connections between regions, all functional connections form a feature vector, and each functional connection is used as a feature of the feature vector;
所述功能连接的具体计算方法为:计算所有两两不同的感兴趣区域所对应的时间序列的皮尔森相关系数。The specific calculation method of the functional connection is: calculating the Pearson correlation coefficients of the time series corresponding to all pairwise different regions of interest.
进一步地,所述对特征向量的每一个特征进行基于梯度分布曲线差异的特 征选择,得到显著特征,具体为:Further, the feature selection based on the gradient distribution curve difference is carried out to each feature of the feature vector to obtain the salient features, specifically:
针对特征向量中每一个特征,计算DSDC分数;For each feature in the feature vector, calculate the DSDC score;
将DSDC分数大于预设阈值的特征选为显著特征,并丢弃DSDC分数小于等于预设阈值的特征。The features whose DSDC score is greater than the preset threshold are selected as salient features, and the features whose DSDC score is less than or equal to the preset threshold are discarded.
进一步地,所述针对特征向量中每一个特征,计算DSDC分数,具体为:Further, the DSDC score is calculated for each feature in the feature vector, specifically:
将所有特征向量中的特征所在范围划分为若干个等长的子区间;Divide the range of features in all feature vectors into several equal-length subintervals;
通过如下公式计算特征的DSDC分数:The DSDC score of a feature is calculated by the following formula:
式中,b 0和b 1为特征的取值下界和上界;δ为子区间的长度;i代表第i个子区间,n i +和n i -为落在[i-δ,i)区间的自闭症受试者和正常受试者的数量,N +和N –为训练集中自闭症受试者和正常受试者的数量。 In the formula, b 0 and b 1 are the lower bound and upper bound of the value of the feature; δ is the length of the subinterval; i represents the i-th subinterval, and n i + and n i - are in the [i-δ, i) interval is the number of autistic subjects and normal subjects, N + and N – is the number of autistic subjects and normal subjects in the training set.
进一步地,所述采用训练集对多层感知机进行有监督的训练具体为无约束条件训练、使用灵敏度约束条件训练或使用特异度约束条件训练;Further, the supervised training of the multi-layer perceptron by using the training set is specifically training without constraints, training with sensitivity constraints, or training with specificity constraints;
当采用无约束条件训练时,在每一轮训练后采用验证集进行评估,如果验证集的评估精度提高,则保存经过该轮训练的参数,否则不保存;When using unconstrained training, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set is improved, the parameters that have been trained in this round are saved, otherwise they are not saved;
当采用灵敏度约束条件训练时,在每一轮训练后采用验证集进行评估,如果验证集的评估精度提高、验证集的评估灵敏度和验证集的评估特异度之差提高且提高值小于预设值,则保存经过该轮训练的参数,否则不保存;When training with sensitivity constraints, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set increases, the difference between the evaluation sensitivity of the verification set and the evaluation specificity of the verification set increases, and the improvement value is less than the preset value , then save the parameters after this round of training, otherwise not save;
当采用特异度约束条件训练时,在每一轮训练后采用验证集进行评估,如果验证集的评估精度提高、验证集的评估特异度和验证集的评估灵敏度之差提高且提高值小于预设值,则保存经过该轮训练的参数,否则不保存。When training with specificity constraints, the verification set is used for evaluation after each round of training. If the evaluation accuracy of the verification set is improved, the difference between the evaluation specificity of the verification set and the evaluation sensitivity of the verification set is increased, and the improvement value is less than the preset value, save the parameters after this round of training, otherwise do not save.
与现有技术相比,本发明具有以下有益的技术效果:Compared with the prior art, the present invention has the following beneficial technical effects:
首先,本发明方法采用基于阶梯分布曲线差异(DSDC)的特征选择方法能够选出比以往常用方法更精炼的有用特征;其次,本发明构建的分类器的精度、灵敏度、特异度和训练速度均超过了基于相同数据集的以往研究中最先进 的实验结果;最后,本发明可以通过在训练过程中施加约束条件,灵活调整分类器的灵敏度和特异度,使得模型能够使用不同的实际应用需求。First of all, the method of the present invention adopts the feature selection method based on the step distribution curve difference (DSDC) to select more refined useful features than the conventional methods; secondly, the accuracy, sensitivity, specificity and training speed of the classifier constructed by the present invention are all the same. It exceeds the state-of-the-art experimental results in previous studies based on the same data set; finally, the present invention can flexibly adjust the sensitivity and specificity of the classifier by imposing constraints during the training process, enabling the model to use different practical application requirements.
说明书附图用来提供对本发明的进一步理解,构成本发明的一部分,本发明的示意性实施例及其说明用于解释本发明,并不构成对本发明的不当限定。The accompanying drawings in the description are used to provide a further understanding of the present invention and constitute a part of the present invention. The schematic embodiments of the present invention and their descriptions are used to explain the present invention and do not constitute improper limitations to the present invention.
图1为本发明方法的流程示意图。Fig. 1 is a schematic flow chart of the method of the present invention.
以下结合附图及具体实施例对本发明进行进一步详细说明。The present invention will be further described in detail below in conjunction with the accompanying drawings and specific embodiments.
为了使本技术领域的人员更好地理解本发明方案,下面将结合本发明实施例中的附图,对本发明实施例中的技术方案进行清楚、完整地描述,显然,所描述的实施例仅仅是本发明一部分的实施例,而不是全部的实施例。基于本发明中的实施例,本领域普通技术人员在没有做出创造性劳动前提下所获得的所有其他实施例,都应当属于本发明保护的范围。In order to enable those skilled in the art to better understand the solutions of the present invention, the technical solutions in the embodiments of the present invention will be clearly and completely described below in conjunction with the drawings in the embodiments of the present invention. Obviously, the described embodiments are only It is an embodiment of a part of the present invention, but not all embodiments. Based on the embodiments of the present invention, all other embodiments obtained by persons of ordinary skill in the art without making creative efforts shall fall within the protection scope of the present invention.
需要说明的是,本发明的说明书和权利要求书及上述附图中的术语“第一”、“第二”等是用于区别类似的对象,而不必用于描述特定的顺序或先后次序。应该理解这样使用的数据在适当情况下可以互换,以便这里描述的本发明的实施例能够以除了在这里图示或描述的那些以外的顺序实施。此外,术语“包括”和“具有”以及他们的任何变形,意图在于覆盖不排他的包含,例如,包含了一系列步骤或单元的过程、方法、系统、产品或设备不必限于清楚地列出的那些步骤或单元,而是可包括没有清楚地列出的或对于这些过程、方法、产品或设备固有的其它步骤或单元。It should be noted that the terms "first" and "second" in the description and claims of the present invention and the above drawings are used to distinguish similar objects, but not necessarily used to describe a specific sequence or sequence. It is to be understood that the data so used are interchangeable under appropriate circumstances such that the embodiments of the invention described herein can be practiced in sequences other than those illustrated or described herein. Furthermore, the terms "comprising" and "having", as well as any variations thereof, are intended to cover a non-exclusive inclusion, for example, a process, method, system, product or device comprising a sequence of steps or elements is not necessarily limited to the expressly listed instead, may include other steps or elements not explicitly listed or inherent to the process, method, product or apparatus.
本发明提供一种基于人脑功能磁共振影像的自闭症分类器构建方法,具体包括:The invention provides a method for constructing an autism classifier based on functional magnetic resonance images of the human brain, which specifically includes:
第一步、对455个正常受试者和477个自闭症受试者大脑功能磁共振影像进行预处理得到特征向量,具体地:基于从人脑功能磁共振影像中提取出的时 间序列计算感兴趣区域之间功能连接,每个功能连接作为一个特征,所有功能连接组成一个特征向量。功能连接的具体计算方法为:计算所有两个不同感兴趣区域所对应的时间序列的皮尔森相关系数。The first step is to preprocess the brain fMRI images of 455 normal subjects and 477 autistic subjects to obtain feature vectors, specifically: based on time series calculations extracted from human brain fMRI images Functional connections between regions of interest, each functional connection is used as a feature, and all functional connections form a feature vector. The specific calculation method of functional connectivity is to calculate the Pearson correlation coefficient of the time series corresponding to all two different regions of interest.
第二步、基于第一步得到的特征向量,进行基于梯度分布曲线差异的特征选择方法。针对每一个特征,计算该特征的DSDC分数:首先将所有特征向量中的特征的所在范围划分为20个等长的子区间,然后统计特征落在每个子区间样例数量,并将该数量除以所属分类的样例总数做归一化,并按照每个区间样本数量经过归一化的值生成阶梯形分布曲线。该过程相当于对该特征的原有分布曲线的一个粗粒度拟合,即通过如下公式计算该特征的DSDC分数。In the second step, based on the feature vector obtained in the first step, a feature selection method based on the difference of the gradient distribution curve is performed. For each feature, calculate the DSDC score of the feature: first divide the range of features in all feature vectors into 20 equal-length subintervals, then count the number of samples in each subinterval, and divide the number by Normalize with the total number of samples belonging to the category, and generate a ladder-shaped distribution curve according to the normalized value of the number of samples in each interval. This process is equivalent to a coarse-grained fitting of the original distribution curve of the feature, that is, the DSDC score of the feature is calculated by the following formula.
公式中,b 0和b 1为特征的取值下界和上界;δ为子区间的长度;i代表第i个子区间,i的取值为[1,20]范围内的整数;n i +和n i -为落在[i-δ,i)区间的自闭症受试者和正常受试者数量,N +和N –为训练集中自闭症受试者和正常受试者的数量。 In the formula, b 0 and b 1 are the lower and upper bounds of the features; δ is the length of the sub-interval; i represents the i-th sub-interval, and the value of i is an integer within the range of [1,20]; n i + and n i - the number of autistic subjects and normal subjects falling in the [i-δ,i) interval, N + and N – the number of autistic subjects and normal subjects in the training set .
本发明预先设置一个过滤阈值,将DSDC分数大于该阈值的特征选为显著特征,丢弃掉DSDC分数小于等于该阈值的特征,并将所有受试者新的特征向量作为训练样本,所述训练样本包括训练集和验证集。The present invention pre-sets a filtering threshold, selects features with DSDC scores greater than the threshold as salient features, discards features with DSDC scores less than or equal to the threshold, and uses new feature vectors of all subjects as training samples, the training samples Includes training set and validation set.
第三步、本发明对变分自编码器的编码器结构进行简化,使用同一个神经网络生成潜在空间的两个参数,采用训练集对变分自编码器进行预训练。In the third step, the present invention simplifies the encoder structure of the variational autoencoder, uses the same neural network to generate two parameters of the potential space, and uses the training set to pre-train the variational autoencoder.
第四步、预训练结束后,将变分自编码器的编码器参数迁移至多层感知机,并采用训练集对多层感知机进行有监督的训练,对多层感知机的参数进行微调,并在每一轮训练后采用验证集进行评估,直至训练至设定的轮数,将经过参数微调的多层感知机作为自闭症分类器,用于自闭症分类。在多层感知机训练过程中,本发明设计了两个约束条件(灵敏度约束和特异度约束)作为可选项。在在多层感知机的训练过程中,增加灵敏度约束和特异度约束可以以少量的精 度降低为代价,分别大幅提升灵敏度和特异度。In the fourth step, after the pre-training is completed, the encoder parameters of the variational autoencoder are transferred to the multi-layer perceptron, and the training set is used for supervised training of the multi-layer perceptron, and the parameters of the multi-layer perceptron are fine-tuned. And after each round of training, the verification set is used for evaluation until the training reaches the set number of rounds, and the multi-layer perceptron with fine-tuned parameters is used as an autism classifier for autism classification. In the multi-layer perceptron training process, the present invention designs two constraint conditions (sensitivity constraint and specificity constraint) as options. In the training process of multi-layer perceptron, adding sensitivity constraints and specificity constraints can greatly improve sensitivity and specificity at the cost of a small amount of accuracy reduction.
灵敏度约束和特异度约束的主要功能在于确定分类器经过每一轮训练所得到的参数是否被保存。本发明将训练集中的数据取出十分之一作为验证集,验证集主要用来对每一轮的训练模型进行评估,不参与训练过程。在未加约束条件时,经过某一轮训练,如果验证集的评估精度有所提高,则经过该轮训练的参数将被保存,否则不被保存。使用灵敏度约束时,经过某一轮训练,如果验证集的评估精度有所提高、验证集的评估灵敏度与验证集的评估特异度之差有所提高且小于0.3,则经过该轮训练的参数将被保存,否则不被保存。使用特异度约束时,经过某一轮训练,如果验证集的评估精度有所提高、验证集的评估特异度与验证集的评估灵敏度之差有所提高且小于0.3,则经过该轮训练的参数将被保存,否则不被保存。使用灵敏度约束有助于提高模型灵敏度;使用特异度约束有助于提高模型特异度。The main function of sensitivity constraints and specificity constraints is to determine whether the parameters obtained by the classifier after each round of training are saved. In the present invention, one-tenth of the data in the training set is taken out as a verification set, and the verification set is mainly used to evaluate the training model of each round without participating in the training process. When there are no constraints, after a certain round of training, if the evaluation accuracy of the verification set is improved, the parameters after this round of training will be saved, otherwise they will not be saved. When using sensitivity constraints, after a certain round of training, if the evaluation accuracy of the verification set is improved, and the difference between the evaluation sensitivity of the verification set and the evaluation specificity of the verification set is improved and less than 0.3, the parameters after this round of training will be saved, otherwise not saved. When specificity constraints are used, after a certain round of training, if the evaluation accuracy of the verification set is improved, and the difference between the evaluation specificity of the verification set and the evaluation sensitivity of the verification set is improved and less than 0.3, the parameters after this round of training will be saved, otherwise not. Using sensitivity constraints can help improve model sensitivity; using specificity constraints can help improve model specificity.
本发明还提供一种基于人脑功能磁共振影像的自闭症分类器构建系统,包括预处理模块、训练集获取模块和训练模块,其中:The present invention also provides an autism classifier construction system based on functional magnetic resonance images of the human brain, including a preprocessing module, a training set acquisition module and a training module, wherein:
预处理模块:用于对正常受试者和自闭症受试者大脑功能磁共振影像进行预处理得到特征向量;Preprocessing module: used to preprocess the brain functional magnetic resonance images of normal subjects and autistic subjects to obtain feature vectors;
训练集获取模块:用于对特征向量的每一个特征进行基于梯度分布曲线差异的特征选择方法,得到显著特征,将所得到显著特征组成新的特征向量,并将所有受试者新的特征向量作为训练样本,所述训练样本包括训练集和验证集;Training set acquisition module: used to perform a feature selection method based on the difference of gradient distribution curves for each feature of the feature vector to obtain salient features, form the obtained salient features into a new feature vector, and combine the new feature vectors of all subjects As a training sample, the training sample includes a training set and a verification set;
训练模块:用于采用训练集对变分自编码器进行预训练,预训练结束后,将变分自编码器的编码器参数迁移至多层感知机,并采用训练集对多层感知机进行有监督的训练,对多层感知机的参数进行微调,并在每一轮训练后采用验证集进行评估,直至训练至设定的轮数,将经过参数微调的多层感知机作为自闭症分类器。Training module: It is used to pre-train the variational autoencoder using the training set. After the pre-training is completed, the encoder parameters of the variational autoencoder are transferred to the multi-layer perceptron, and the multi-layer perceptron is effectively implemented using the training set. Supervised training, fine-tuning the parameters of the multi-layer perceptron, and using the verification set for evaluation after each round of training, until the training reaches the set number of rounds, the multi-layer perceptron with parameter fine-tuning is used as an autism classification device.
利用本发明在ABIDE I数据集上经过了实验和测试,实验结果显示,本发明构建的分类器的精度(78.12%)(不使用约束条件)、灵敏度(87.20%)(使 用灵敏度约束)、特异度(88.55%)(使用特异度约束)和训练速度(10折交叉验证耗时85秒)均超过了基于相同数据集的以往研究中最先进的实验结果。Utilize the present invention to pass through experiments and tests on the ABIDE I data set, and the experimental results show that the accuracy (78.12%) of the classifier constructed by the present invention (without constraints), sensitivity (87.20%) (with sensitivity constraints), specificity Both accuracy (88.55%) (using specificity constraints) and training speed (10-fold cross-validation took 85 seconds) surpassed the state-of-the-art experimental results in previous studies based on the same dataset.
本领域内的技术人员应明白,本发明的实施例可提供为方法、系统、或计算机程序产品。因此,本发明可采用完全硬件实施例、完全软件实施例、或结合软件和硬件方面的实施例的形式。而且,本发明可采用在一个或多个其中包含有计算机可用程序代码的计算机可用存储介质(包括但不限于磁盘存储器、CD-ROM、光学存储器等)上实施的计算机程序产品的形式。Those skilled in the art should understand that the embodiments of the present invention may be provided as methods, systems, or computer program products. Accordingly, the present invention can take the form of an entirely hardware embodiment, an entirely software embodiment, or an embodiment combining software and hardware aspects. Furthermore, the present invention may take the form of a computer program product embodied on one or more computer-usable storage media (including but not limited to disk storage, CD-ROM, optical storage, etc.) having computer-usable program code embodied therein.
本发明是参照根据本发明实施例的方法、设备(系统)、和计算机程序产品的流程图和/或方框图来描述的。应理解可由计算机程序指令实现流程图和/或方框图中的每一流程和/或方框、以及流程图和/或方框图中的流程和/或方框的结合。可提供这些计算机程序指令到通用计算机、专用计算机、嵌入式处理机或其他可编程数据处理设备的处理器以产生一个机器,使得通过计算机或其他可编程数据处理设备的处理器执行的指令产生用于实现在流程图一个流程或多个流程和/或方框图一个方框或多个方框中指定的功能的装置。The present invention is described with reference to flowchart illustrations and/or block diagrams of methods, apparatus (systems), and computer program products according to embodiments of the invention. It should be understood that each procedure and/or block in the flowchart and/or block diagram, and a combination of procedures and/or blocks in the flowchart and/or block diagram can be realized by computer program instructions. These computer program instructions may be provided to a general purpose computer, special purpose computer, embedded processor, or processor of other programmable data processing equipment to produce a machine such that the instructions executed by the processor of the computer or other programmable data processing equipment produce a An apparatus for realizing the functions specified in one or more procedures of the flowchart and/or one or more blocks of the block diagram.
这些计算机程序指令也可存储在能引导计算机或其他可编程数据处理设备以特定方式工作的计算机可读存储器中,使得存储在该计算机可读存储器中的指令产生包括指令装置的制造品,该指令装置实现在流程图一个流程或多个流程和/或方框图一个方框或多个方框中指定的功能。These computer program instructions may also be stored in a computer-readable memory capable of directing a computer or other programmable data processing apparatus to operate in a specific manner, such that the instructions stored in the computer-readable memory produce an article of manufacture comprising instruction means, the instructions The device realizes the function specified in one or more procedures of the flowchart and/or one or more blocks of the block diagram.
这些计算机程序指令也可装载到计算机或其他可编程数据处理设备上,使得在计算机或其他可编程设备上执行一系列操作步骤以产生计算机实现的处理,从而在计算机或其他可编程设备上执行的指令提供用于实现在流程图一个流程或多个流程和/或方框图一个方框或多个方框中指定的功能的步骤。These computer program instructions can also be loaded onto a computer or other programmable data processing device, causing a series of operational steps to be performed on the computer or other programmable device to produce a computer-implemented process, thereby The instructions provide steps for implementing the functions specified in the flow chart or blocks of the flowchart and/or the block or blocks of the block diagrams.
最后应当说明的是:以上实施例仅用于说明本发明的技术方案而非对其保护范围的限制,尽管参照上述实施例对本发明进行了详细的说明,所属领域的普通技术人员应当理解:本领域技术人员阅读本发明后依然可对发明的具体实施方式进行种种变更、修改或者等同替换,但这些变更、修改或者等同替换,均在 发明待批的权利要求保护范围之内。Finally, it should be noted that: the above embodiments are only used to illustrate the technical solutions of the present invention rather than limiting its protection scope, although the present invention has been described in detail with reference to the above embodiments, those of ordinary skill in the art should understand that: Those skilled in the art can still make various changes, modifications or equivalent replacements to the specific embodiments of the invention after reading the present invention, but these changes, modifications or equivalent replacements are all within the protection scope of the pending claims of the invention.
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