WO2021155798A1 - Use of immune polypeptide in antiviral drug - Google Patents
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- WO2021155798A1 WO2021155798A1 PCT/CN2021/075008 CN2021075008W WO2021155798A1 WO 2021155798 A1 WO2021155798 A1 WO 2021155798A1 CN 2021075008 W CN2021075008 W CN 2021075008W WO 2021155798 A1 WO2021155798 A1 WO 2021155798A1
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- A61K38/00—Medicinal preparations containing peptides
- A61K38/04—Peptides having up to 20 amino acids in a fully defined sequence; Derivatives thereof
- A61K38/08—Peptides having 5 to 11 amino acids
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- the present invention belongs to the field of medical technology. Specifically, the present invention relates to the application of immunogenic peptides and derivatives thereof in antiviral drugs, and in particular to the application of the peptides or derivatives thereof in preparing drugs for inhibiting human coronavirus.
- the peptide with the sequence of GQTYTSG (herein referred to as 7P) is an immunogenic peptide originally designed based on the hepatitis C virus.
- Peptide 7P and its derivatives are also proposed that 7P and its derivatives can also be used to prevent and treat liver damage, especially to prevent or treat immune liver damage and hepatotoxic chemicals. Liver damage.
- Coronavirus has a huge impact on human health, and their genetic recombination may lead to the emergence of new strains, research and development of new antiviral strategies are crucial.
- the technical problem solved by the present invention is to provide a new application of immune polypeptides in suppressing viruses, so as to provide a basis for antiviral research and strategy implementation.
- an application of an immune polypeptide or its derivative in the preparation of a drug for inhibiting human coronavirus replication refers to the peptide represented by the following formula I or its pharmaceutically acceptable
- Xaa1 is deletion, Ala, Gly, Val, Leu or Ile,
- Xaa2 is Thr or Ser
- Xaa3 is Tyr, Phe or Trp
- Xaa4 is deletion, Ala, Gly, Val, Leu, Ile, or Pro.
- the inhibition of human coronavirus replication is achieved by combining the immune polypeptide with the 3CL protease protease, especially by competing for binding to the active center of the protease, thereby inhibiting rapid virus replication.
- coronavirus is a large virus family. Whenever a new strain appears, it poses new challenges to suppression and treatment technologies. The global epidemic in 2020 is due to a previous The unknown coronavirus (known as the "new coronavirus") spreads widely and infects many people, which can be said to far exceed other similar viruses.
- the human coronavirus may especially be the above-mentioned new coronavirus and coronaviruses of similar nature.
- the new coronavirus (COVID-19) that caused pneumonia in 2020 also includes The mutated virus that may appear due to COVID-19.
- the inhibitory activity of the 7P peptide with the sequence GQTYTSG on human coronaviruses was studied, and it was proved that it can inhibit the rapid replication of the coronavirus, which can suggest that 7P or its derivatives are the effective ingredients of the corresponding anti-coronavirus drugs. , And can be used as the only active ingredient of the drug.
- the present invention provides the application of the above-mentioned immune polypeptide or its derivative in the preparation of a medicine for the treatment of pneumonia.
- the pneumonia is caused by a coronavirus
- the immune polypeptide or its derivative is the peptide represented by the following formula I or its pharmacologically Acceptable salt or ester:
- Xaa1 is deletion, Ala, Gly, Val, Leu or Ile,
- Xaa2 is Thr or Ser
- Xaa3 is Tyr, Phe or Trp
- Xaa4 is deletion, Ala, Gly, Val, Leu, Ile, or Pro.
- the pneumonia caused by coronavirus infection targeted by the present invention specifically includes pneumonia caused by new coronaviruses such as COVID-19 and coronaviruses of similar nature or mutations thereof, for example, due to COVID-19 in 2020
- the pneumonia epidemic caused by -19 infection, the pneumonia caused by COVID-19 is also called the new type of coronavirus pneumonia.
- the active ingredient of the medicine for treating pneumonia provided by the present invention may contain or only use the above-mentioned immune polypeptide as the only effective ingredient, for example, 7P peptide or its derivative is the only effective ingredient, thereby providing a novel anti-coronavirus drug.
- another aspect of the present invention also provides a drug, which is a drug for inhibiting the replication of human coronavirus and/or a drug for treating pneumonia caused by coronavirus infection, wherein the drug includes An immune polypeptide or a derivative thereof, wherein the immune polypeptide or a derivative thereof is a polypeptide represented by the following formula I or a pharmaceutically acceptable salt or ester thereof:
- Xaa1 is deletion, Ala, Gly, Val, Leu or Ile,
- Xaa2 is Thr or Ser
- Xaa3 is Tyr, Phe or Trp
- Xaa4 is deletion, Ala, Gly, Val, Leu, Ile, or Pro.
- the human coronavirus is COVID-19, or its mutant virus; the inhibition of human coronavirus replication is through the combination of immune polypeptide and 3CL protease protease, thereby inhibiting virus replication; the immune polypeptide has the following sequence The 7P peptide: GQTYTSG; this 7P peptide is the only effective ingredient in drugs that inhibit human coronavirus replication.
- a method for the treatment of respiratory diseases or pneumonia caused by coronavirus infection which comprises administering to a patient a drug containing the polypeptide represented by the following formula I or a pharmaceutically acceptable salt or ester thereof as an active ingredient:
- Xaa1 is deletion, Ala, Gly, Val, Leu or Ile,
- Xaa2 is Thr or Ser
- Xaa3 is Tyr, Phe or Trp
- Xaa4 is deletion, Ala, Gly, Val, Leu, Ile, or Pro.
- the respiratory disease or pneumonia is caused by a coronavirus infection;
- the coronavirus is COVID-19, or a variant virus thereof;
- the immune polypeptide is a 7P peptide with the following sequence: GQTYTSG; the 7P peptide is the The only active ingredient in the medicine.
- the implementation of the present invention has significant value for further effectively inhibiting the mechanism of coronavirus replication, as well as for the development of clinical medications and treatment plans for related diseases caused by coronavirus infection.
- Figure 1 shows the high-resolution crystal structure of COVID-19 coronavirus 3CL hydrolase (Mpro).
- Figure 2 shows the effect of the binding mode of the ligand molecule in the crystal structure of the 3CL hydrolase protein.
- Figure 2 shows the effect of the binding mode of the ligand molecule in the crystal structure of the 3CL hydrolase protein.
- A shows the binding mode of the natural ligand and 3CL protease in the protein crystal structure
- C shows the superimposing effect of the docking conformational binding mode of the short peptide 7P in the protein crystal structure with the binding mode ranked first in the docking score and the binding mode of the ligand in the protein crystal structure.
- Figure 3 shows the docking conformation distribution diagram of the top 10 binding modes of the short peptide 7P docking score in the experimental example.
- the present invention is a new achievement based on the existing technology and research against the coronavirus.
- the large open reading frame (ORF) 1a/1ab gene located at the 5'end of the genome is responsible for the expression of two large replicase polyproteins (pp).
- These virus-encoded 3CL pro and papain-like protease (Papain-like Protease) cooperate or cleave after translation to produce 16 non-structural proteins responsible for virus replication.
- 3CL pro is also called the main protease because it has 11 cleavage sites in pp1a and pp1ab, while papain-like protease has only 3 cleavage sites.
- 3CL pro has three different domains. Domains I and II are largely composed of several anti-parallel ⁇ -barrels and long loop regions connected to domain III. Domain III is composed of several globular alpha helices ( ⁇ -helices) and functioning protein dimerization. The active site is located in the chymotrypsin-like fold between the I and II domains. It contains the catalytic dimer of His41, which acts as a proton acceptor, and Cys144/5 nucleophilic attack on the carbonyl carbon of the substrate.
- coronavirus 3CL pro have high sequence homology, and the main chain structure and substrate are conserved.
- the substrate binding site of 3CL pro has two deeply buried S1 and S2 subsites, and the shallowly buried S1, S3 and S4 subsites have varying degrees of solvent exposure.
- the substrate specificity of coronavirus 3CL pro is mainly determined by P1, P2 and P1'. In theory, since these viruses have highly homologous binding sites and substrate conservation, it is reasonable to predict that broad-spectrum inhibitor strategies may be successful. Therefore, this study of the present invention will provide further evidence for the identification of broad-spectrum 3CL pro inhibitors.
- 3CL pro is also known as the main protease (Mpro), which plays a key role in the virus life cycle, including the processing of polyproteins and virus replication.
- the polyproteins pp1a and pp1ab were subsequently cleaved into 16 non-structural functional proteins (nsp1 to nsp16). These proteins are mainly involved in the proteolytic process and viral RNA synthesis, including genome replication and subgenomic mRNA synthesis.
- the remaining genome contains 9 orf, which encode 4 structural proteins-ear protein (S), nucleocapsid protein (N), membrane protein (M) and envelope protein (E), and 5 accessory proteins (3a -c, 7a and 7b).
- inhibitors targeting 3CL pro including pyridine n-oxide derivatives, peptidomimetic analogs, covalent inhibitors and peptidyl compounds, have been evaluated.
- Natural products of herbal extracts may become the main resource for the development of antiviral drugs.
- Previous studies have shown that natural compounds have antiviral activity against 3CL pro of SARs-CoV and interfere with virus replication. There is currently no antiviral drug for 3CL pro.
- the drug screening work against the new coronavirus COVID-19 was carried out.
- the similarity of the new coronavirus 3CL hydrolase (3C-like Proteinase, 3CL protease, 3CL pro ) and SARS reaches 96%. Through this strategy, it is suggested that potential 3CL hydrolase inhibitors can be obtained.
- 3CL protease protease that is synthesized and cleaved. Therefore, 3CL protease is an important target for research on inhibiting the replication and reproduction of coronaviruses.
- results of this molecular simulation docking show that artificially synthesized immune peptides derived from the E1-C end of the hepatitis C virus HCV envelope, such as GQTYTSG synthetic peptide, combined with the active center of 3CL protease protease, showing that the synthetic peptide and 3CL protease protein
- the competitive binding of hydrolase (3CL pro ) substrates is expected to inhibit the replication and reproduction of coronaviruses (such as COVID-19), and it is possible to treat such coronavirus infections.
- the immune polypeptide studied in the present invention can also be called immune 7 peptide, especially 7P peptide, which itself is a previously disclosed product. Therefore, the definition of the immune polypeptide, the method of obtaining it, and related drugs are all You can refer to the published content. For ease of reading, a brief explanation is as follows.
- “Pharmaceutically acceptable ester” refers to an ester suitable for contact with human or animal tissues without excessive toxicity, irritation, or allergic reactions. Generally, esterification modification can reduce the hydrolysis of peptides by proteases in the body.
- the terminal amino group, carboxyl group or side chain group of the peptide of the present invention can be modified to form a pharmaceutically acceptable ester. Modifications to amino acid side chain groups include, but are not limited to, the esterification reaction of threonine and serine side chain hydroxyl groups with carboxylic acids.
- the terminal group is protected with a protective group known to those skilled in the field of protein chemistry, such as acetyl, trifluoroacetyl, Fmoc (9-fluorenyl-methoxycarbonyl), Boc (tert-butoxycarbonyl), Alloc (allyloxycarbonyl), C1-3 alkyl, C6-12 aralkyl, etc.
- a protective group known to those skilled in the field of protein chemistry, such as acetyl, trifluoroacetyl, Fmoc (9-fluorenyl-methoxycarbonyl), Boc (tert-butoxycarbonyl), Alloc (allyloxycarbonyl), C1-3 alkyl, C6-12 aralkyl, etc.
- 7P is sufficient for treatment under physiological conditions without modification, so we can choose not to modify the N-terminal amino group and the C-terminal carboxyl group and amino acid side chain groups of the polypeptide of formula I.
- the N-terminal chemical group is still the ⁇ -amino group (-NHB 2B ) on the first amino acid
- the C-terminal chemical group is the C-terminal amino acid carboxyl group (-COOH), so it is also called amino acid 7 peptide.
- “Pharmaceutically acceptable salt” refers to a salt suitable for contact with human or animal tissues without excessive toxicity, irritation, or allergic reactions. Pharmaceutically acceptable salts are well known in the art. This salt can be prepared during the final separation and purification of the polypeptide of the present invention, or the peptide can be separately prepared by reacting the peptide with a suitable organic or inorganic acid or base.
- Representative acid addition salts include, but are not limited to, acetate, dihexanoate, alginate, citrate, aspartate, benzoate, benzenesulfonate, bisulfate, butyrate , Camphorate, camphorsulfonate, glycerophosphate, hemisulfate, heptanoate, caproate, fumarate, hydrochloride, hydrobromide, hydroiodide, 2-hydroxyethanesulfonate Acid salt, lactate, maleate, methanesulfonate, nicotinate, 2-naphthalenesulfonate, oxalate, 3-phenylpropionate, propionate, succinate, tartrate , Phosphate, glutamate, bicarbonate, p-toluenesulfonate and undecanoate.
- the preferred acids that can be used to form pharmaceutically acceptable salts are hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, oxalic acid, maleic acid, succinic acid, and citric acid.
- Cations in pharmaceutically acceptable base addition salts include, but are not limited to, alkali metal or alkaline earth metal ions such as lithium, sodium, potassium, calcium, magnesium, and aluminum, and non-toxic quaternary ammonium cations such as ammonium, tetramethylammonium, Tetraethylammonium, methylamine, dimethylamine, trimethylamine, triethylamine, diethylamine, ethylamine, diethylamine, ethanolamine, diethanolamine, piperidine, piperazine, etc.
- Preferred base addition salts include phosphate, tris and acetate. These salts generally can increase the solubility of the polypeptide, and the formed salt does not substantially change the activity of the polypeptide.
- the polypeptide of the present invention can be used alone or in the form of a pharmaceutically acceptable salt.
- drug can be used interchangeably unless otherwise specified, and refer to a product containing active ingredients of a drug, and optionally it also contains A pharmaceutically acceptable carrier.
- pharmaceutically acceptable carrier refers to non-toxic solid, semi-solid or liquid fillers, diluents, adjuvants, wrapping materials or other preparation excipients.
- the carrier used can be compatible with the corresponding administration form, and can be formulated into injections, (for injection) freeze-dried powders, sprays, oral solutions, oral suspensions, tablets, capsules, etc., using carriers known to those skilled in the art.
- the administration is by injection, and it is dissolved in physiological saline as a carrier. Therefore, the drug of the present invention may be an injection or a freeze-dried powder for injection.
- the drug may be a unit preparation, that is, a preparation that satisfies the active ingredients required for one administration.
- unit preparations such as a unit (tablet) tablet, a unit (needle) injection or powder injection, etc., where the active ingredient is the amount required for one administration.
- dose the dose per unit body weight required for one administration of the subject.
- dose the dose per unit body weight required for one administration of the subject.
- the weight of an adult is usually set as 60 kg, and this weight value can be used for calculation.
- the unit body weight dose of different subjects can be calculated through the equivalent dose conversion relationship.
- the effective human dose can be derived from the dose of experimental animals.
- dose herein refers to the dose for rats.
- a factor of 6 can usually be used to convert human and rat doses.
- the pharmaceutical manufacturer can convert the content of the active ingredient in the unit preparation for application in its pharmaceutical process.
- the dose of 7P or its derivatives in a unit preparation can be 30-300 ⁇ g/kg rat dose, or 40-180 ⁇ g/kg rat dose, such as 174, 87, or 43.5 ⁇ g/kg Rat dose.
- the unit preparation contains 300-3000 ⁇ g 7P or its derivatives, preferably 400-1800 ⁇ g 7P or its derivatives, such as 1740, 870, or 435 ⁇ g 7P or its derivatives.
- the inventors used a molecular docking method to specifically study the binding mode of COVID-19 virus target protein 3CL protease and 7P peptide (GQTYTSG), and further studied the effect of 7P peptide (GQTYTSG) on 3CL. Inhibition of protease activity.
- the crystal structure of the COVID-19 coronavirus 3CL hydrolase complex analyzed and determined by the research team of Shanghai University of Science and Technology Rao Zihe is to delete the water molecules and small molecular compounds, leaving the protein structure, and the high-resolution crystal structure obtained Figure 1.
- the coordinates of the crystal structure are from the PDB Protein Data Bank (PDB) (ID: 6LU7).
- the above-mentioned protein structure is used as the receptor, and the 7P peptide sequence is input.
- the following parameters are used: three peptide structure models are generated, and the peptide conformation RMSD value is set to The exhaustiveness value of the conformation search is set to 100, and the molecular docking is expanded.
- MDOCK uses a statistical function of basic knowledge to evaluate the binding ability between short peptides and proteins.
- the binding ability is reflected logarithmically as an evaluation score (matching scoring).
- the score value for docking is a negative number. The lower the score value, the stronger the bonding ability or the greater the possibility of bonding.
- Table 1 shows the docking scores of the top 10 binding modes (Model 1 to Model 1) of short peptide 7P and 3CL protein binding ability.
- the binding mode (Model 1) ranked No. 1 is very similar to the binding mode of the ligand in the crystal structure of the 3CL protein.
- FIG 2 A, B, C, and A shows the binding mode of natural ligands, which are represented by a blue stick-shaped model in the color diagram (A);
- the purple-red stick model represents (B), and it can be seen that the binding conformation of the natural ligand in A is very similar; the effect of superimposing the two also illustrates this point (C).
- the 3CL protein is represented by a ribbon model (shown in green in the color picture), and the natural ligand in the crystal structure is represented by a relatively thick stick model (color picture) (Shown in blue in the middle), the 7P docking conformation is represented by a relatively thin rod-shaped model (shown in purple in the color picture), and it is obviously observed that they are more concentrated.
- the short peptide 7P may bind to the enzyme active pocket region of 3CL protease and compete with the natural substrate to occupy this pocket region.
- Table 1 The top 10 binding modes of short peptide 7P and 3CL protease
- the target molecule is docked to the structure of the target 3CL protease.
- the 7P peptide has a docking conformation that binds to the active pocket region of 3CL protease. It can be considered that the short peptide 7P binds to the active pocket region of 3CL protease and competes with the natural substrate to occupy the pocket region.
- This experimental example investigates the effect of 7P peptide and control peptide on the enzyme activity of 3C-like Proteinase.
- the main principle is: both the fluorescent group EDANS and the quenching group DABCYL are connected to the natural substrate of 3CL Pro protease (such as Dabcyl-KTSAVLQSGFRKME- Edans), when the substrate is not cut off, DABCYL can quench the fluorescence of EDANS, so that no fluorescence can be detected; when the substrate is cut off by 3CL Pro , the fluorescence of EDANS is no longer quenched by DABCYL, and then EDANS can be detected.
- 3CL Pro protease such as Dabcyl-KTSAVLQSGFRKME- Edans
- Buffer 20mM Tris-HCl buffer, pH 7.0;
- Standard enzyme solution 3C-like Proteinase dissolved in deionized water to form an enzyme solution with a concentration of 1.2ug/ul;
- Substrate solution Dabcyl-KTSAVLQSGFRKME-Edans (coronavirus main protease fluorescent substrate, hereinafter referred to as substrate) is stored in deionized water at a concentration of 3mM.
- Test substance a) The 7P peptide was dissolved in distilled water to a 1mg/ml 7P peptide solution; b) The control polypeptide was dissolved in distilled water into a 1mg/ml control polypeptide solution; the control polypeptide was obtained by chemical synthesis, and its sequence is RKNHVGL is close to the 7P peptide amino acid number and sequence to exclude the non-specificity of the peptide sequence.
- Testing equipment Microplate reader, using 96-well plate/enzyme plate.
- the measurement process is as follows: each take 100 ⁇ L The 1st dilution to the 11th dilution were placed in the wells of the 96-well plate/enzyme standard plate (100 ⁇ L per well), excited at the wavelength of 340nm, and measured the absorbance value (RFU value) at the wavelength of 535nm.
- the enzyme amount in is the abscissa and the RFU value is the ordinate to draw a standard curve, and fit the slope of the standard curve.
- test group
- Blank control group Take 10 ⁇ L of the enzyme solution in the above-mentioned buffer replacement step (B) to perform the above process, and measure the change in fluorescence intensity per minute RFU Blank of the blank control group;
- control peptide has basically no effect on the 3C-like Proteinase activity, while the 7P peptide has a significant inhibitory effect on the 3C-like Proteinase activity.
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Abstract
Description
本发明属于医药技术领域,具体而言,本发明涉及免疫原性肽及其衍生物抗病毒药物中的应用,尤其涉及该肽或其衍生物制备抑制人类冠状病毒的药物中的应用。The present invention belongs to the field of medical technology. Specifically, the present invention relates to the application of immunogenic peptides and derivatives thereof in antiviral drugs, and in particular to the application of the peptides or derivatives thereof in preparing drugs for inhibiting human coronavirus.
序列为GQTYTSG的肽(本文中简称为7P)是一种最初根据丙型肝炎病毒而设计的免疫原性肽,本发明人在中国专利CN1194986C和CN1216075C中披露了用作丙型肝炎病毒免疫原性肽的7P及其衍生物。另外,在PCT申请WO/2007/137456中,本发明人也提出了7P及其衍生物还能用于预防和治疗肝损伤的应用,尤其能预防或治疗免疫性肝损伤和肝毒性化学物质引起的肝损伤。此后,本发明人又证明7P对于肾炎也有一定的治疗作用,并披露于中国专利申请CN101559217A中。The peptide with the sequence of GQTYTSG (herein referred to as 7P) is an immunogenic peptide originally designed based on the hepatitis C virus. The present inventors disclosed in Chinese patents CN1194986C and CN1216075C as the immunogenicity of hepatitis C virus. Peptide 7P and its derivatives. In addition, in the PCT application WO/2007/137456, the inventors also proposed that 7P and its derivatives can also be used to prevent and treat liver damage, especially to prevent or treat immune liver damage and hepatotoxic chemicals. Liver damage. After that, the inventors proved that 7P also has a certain therapeutic effect on nephritis, and it was disclosed in Chinese patent application CN101559217A.
冠状病毒对人类健康的巨大影响,以及它们的基因重组可能导致全新毒株的出现,研究和制定新型抗病毒策略至关重要。然而,目前还没有能够抑制人类冠状病毒感染的分子实体。因此,研究包含上述7P的免疫多肽在抑制病毒活性方面的功效,特别是对人类冠状病毒的抑制,是一个新的课题。Coronavirus has a huge impact on human health, and their genetic recombination may lead to the emergence of new strains, research and development of new antiviral strategies are crucial. However, there is no molecular entity that can inhibit human coronavirus infection. Therefore, it is a new topic to study the efficacy of immune polypeptides containing the above-mentioned 7P in suppressing viral activity, especially the suppression of human coronavirus.
发明内容Summary of the invention
本发明所解决的技术问题在于提供了免疫多肽在抑制病毒方面的新的应用,从而为抗病毒研究和策略实施提供依据。The technical problem solved by the present invention is to provide a new application of immune polypeptides in suppressing viruses, so as to provide a basis for antiviral research and strategy implementation.
本发明一方面,提出了一种免疫多肽或其衍生物在制备抑制人类冠状病毒复制的药物中的应用,所述免疫多肽或其衍生物指如下式I所示的肽或其药学上可接受的盐或酯:In one aspect of the present invention, an application of an immune polypeptide or its derivative in the preparation of a drug for inhibiting human coronavirus replication is proposed. The immune polypeptide or its derivative refers to the peptide represented by the following formula I or its pharmaceutically acceptable The salt or ester:
Xaa1-Gln-Xaa2-Xaa3-Thr-Ser-Gly-Xaa4 (式I)Xaa1-Gln-Xaa2-Xaa3-Thr-Ser-Gly-Xaa4 (Formula I)
其中,in,
Xaa1为缺失、Ala、Gly、Val、Leu或Ile,Xaa1 is deletion, Ala, Gly, Val, Leu or Ile,
Xaa2为Thr或Ser,Xaa2 is Thr or Ser,
Xaa3为Tyr、Phe或Trp,而且Xaa3 is Tyr, Phe or Trp, and
Xaa4为缺失、Ala、Gly、Val、Leu、Ile或Pro。Xaa4 is deletion, Ala, Gly, Val, Leu, Ile, or Pro.
本发明的方案中,所述抑制人类冠状病毒复制是通过使所述免疫多肽与3CL protease蛋白水解酶的结合,尤其是通过竞争结合该蛋白水解酶的活性中心,从而抑制病毒快速复制。In the solution of the present invention, the inhibition of human coronavirus replication is achieved by combining the immune polypeptide with the 3CL protease protease, especially by competing for binding to the active center of the protease, thereby inhibiting rapid virus replication.
人感染了冠状病毒后常见体征有呼吸道症状、发热、咳嗽、气促和呼吸困难等,因毒株种类不同,引发的疾病可能是普通感冒,也可能时中东呼吸综合征(MERS)和严重急性呼吸综合征(SARS)等较严重疾病,冠状病毒是一个大型病毒家族,每当有新型毒株出现,都对抑制和治疗技术提出新的挑战,2020年引发全球性疫情就是源于一种之前未知的冠状病毒(被称为“新型冠状病毒”),其传播范围之广,感染人群之多,可以说远超其它同类病毒。所以,本发明的方案中,所述人类冠状病毒尤其可以为上述新型冠状病毒以及性质类似的冠状病毒,例如,2020年引起肺炎疫情的新型冠状病毒(COVID-19),也包括了基于已经确定的COVID-19而可能出现的变异病毒。Common signs of people infected with coronavirus include respiratory symptoms, fever, cough, shortness of breath and dyspnea. Due to the different strains of the virus, the disease caused may be the common cold, or it may be the Middle East Respiratory Syndrome (MERS) and severe acute Respiratory syndrome (SARS) and other more serious diseases. Coronavirus is a large virus family. Whenever a new strain appears, it poses new challenges to suppression and treatment technologies. The global epidemic in 2020 is due to a previous The unknown coronavirus (known as the "new coronavirus") spreads widely and infects many people, which can be said to far exceed other similar viruses. Therefore, in the solution of the present invention, the human coronavirus may especially be the above-mentioned new coronavirus and coronaviruses of similar nature. For example, the new coronavirus (COVID-19) that caused pneumonia in 2020 also includes The mutated virus that may appear due to COVID-19.
本发明中,尤其研究了具有序列为GQTYTSG的7P肽对人类冠状病毒的抑制活性,证明其可抑制冠状病毒的快速复制,可以提示7P或其衍生物作为相应的抗冠状病毒的药物的有效成分,且可以作为该药物的唯一有效成分。In the present invention, the inhibitory activity of the 7P peptide with the sequence GQTYTSG on human coronaviruses was studied, and it was proved that it can inhibit the rapid replication of the coronavirus, which can suggest that 7P or its derivatives are the effective ingredients of the corresponding anti-coronavirus drugs. , And can be used as the only active ingredient of the drug.
本发明提供了上述免疫多肽或其衍生物在制备治疗肺炎的药物中的应用,所述肺炎为因冠状病毒引起,所述免疫多肽或其衍生物为如下式I所示的肽或其药学上可接受的盐或酯:The present invention provides the application of the above-mentioned immune polypeptide or its derivative in the preparation of a medicine for the treatment of pneumonia. The pneumonia is caused by a coronavirus, and the immune polypeptide or its derivative is the peptide represented by the following formula I or its pharmacologically Acceptable salt or ester:
Xaa1-Gln-Xaa2-Xaa3-Thr-Ser-Gly-Xaa4 (式I)Xaa1-Gln-Xaa2-Xaa3-Thr-Ser-Gly-Xaa4 (Formula I)
其中,in,
Xaa1为缺失、Ala、Gly、Val、Leu或Ile,Xaa1 is deletion, Ala, Gly, Val, Leu or Ile,
Xaa2为Thr或Ser,Xaa2 is Thr or Ser,
Xaa3为Tyr、Phe或Trp,而且Xaa3 is Tyr, Phe or Trp, and
Xaa4为缺失、Ala、Gly、Val、Leu、Ile或Pro。Xaa4 is deletion, Ala, Gly, Val, Leu, Ile, or Pro.
本发明所针对的因冠状病毒感染所引起的肺炎,特别包括了因 COVID-19等新型冠状病毒以及性质类似的、或由其变异而成的冠状病毒所引起的肺炎,例如,2020年因COVID-19感染导致的肺炎疫情,由COVID-19导致的肺炎也称新型冠状病毒肺炎。The pneumonia caused by coronavirus infection targeted by the present invention specifically includes pneumonia caused by new coronaviruses such as COVID-19 and coronaviruses of similar nature or mutations thereof, for example, due to COVID-19 in 2020 The pneumonia epidemic caused by -19 infection, the pneumonia caused by COVID-19 is also called the new type of coronavirus pneumonia.
本发明所提供的治疗肺炎药物的活性成分可以包含或者仅以上述免疫多肽为唯一有效成分,例如,以7P肽或其衍生物是唯一有效成分,从而提供一种新型的抗冠状病毒的药物。The active ingredient of the medicine for treating pneumonia provided by the present invention may contain or only use the above-mentioned immune polypeptide as the only effective ingredient, for example, 7P peptide or its derivative is the only effective ingredient, thereby providing a novel anti-coronavirus drug.
作为本发明思想的延伸,本发明的另一方面,还提供一种药物,该药物为抑制人类冠状病毒复制的药物和/或治疗由冠状病毒感染引起的肺炎的药物,其中,所述药物包括免疫多肽或其衍生物,所述免疫多肽或其衍生物为如下式I所示多肽或其药学上可接受的盐或酯:As an extension of the idea of the present invention, another aspect of the present invention also provides a drug, which is a drug for inhibiting the replication of human coronavirus and/or a drug for treating pneumonia caused by coronavirus infection, wherein the drug includes An immune polypeptide or a derivative thereof, wherein the immune polypeptide or a derivative thereof is a polypeptide represented by the following formula I or a pharmaceutically acceptable salt or ester thereof:
Xaa1-Gln-Xaa2-Xaa3-Thr-Ser-Gly-Xaa4 (式I)Xaa1-Gln-Xaa2-Xaa3-Thr-Ser-Gly-Xaa4 (Formula I)
其中,in,
Xaa1为缺失、Ala、Gly、Val、Leu或Ile,Xaa1 is deletion, Ala, Gly, Val, Leu or Ile,
Xaa2为Thr或Ser,Xaa2 is Thr or Ser,
Xaa3为Tyr、Phe或Trp,而且Xaa3 is Tyr, Phe or Trp, and
Xaa4为缺失、Ala、Gly、Val、Leu、Ile或Pro。Xaa4 is deletion, Ala, Gly, Val, Leu, Ile, or Pro.
根据本发明的一些实施例,人类冠状病毒为COVID-19,或者其变异病毒;抑制人类冠状病毒复制是通过免疫多肽与3CL protease蛋白水解酶的结合,从而抑制病毒复制;免疫多肽为具有如下序列的7P肽:GQTYTSG;该7P肽是抑制人类冠状病毒复制药物中唯一有效成分。According to some embodiments of the present invention, the human coronavirus is COVID-19, or its mutant virus; the inhibition of human coronavirus replication is through the combination of immune polypeptide and 3CL protease protease, thereby inhibiting virus replication; the immune polypeptide has the following sequence The 7P peptide: GQTYTSG; this 7P peptide is the only effective ingredient in drugs that inhibit human coronavirus replication.
本发明的再一方面,还提供冠状病毒感染引起的呼吸疾病或肺炎的治疗方法,包括对患者施用包含如下式I所示多肽或其药学上可接受的盐或酯作为有效成分的药物:In another aspect of the present invention, there is also provided a method for the treatment of respiratory diseases or pneumonia caused by coronavirus infection, which comprises administering to a patient a drug containing the polypeptide represented by the following formula I or a pharmaceutically acceptable salt or ester thereof as an active ingredient:
Xaa1-Gln-Xaa2-Xaa3-Thr-Ser-Gly-Xaa4 (式I)Xaa1-Gln-Xaa2-Xaa3-Thr-Ser-Gly-Xaa4 (Formula I)
其中,in,
Xaa1为缺失、Ala、Gly、Val、Leu或Ile,Xaa1 is deletion, Ala, Gly, Val, Leu or Ile,
Xaa2为Thr或Ser,Xaa2 is Thr or Ser,
Xaa3为Tyr、Phe或Trp,而且Xaa3 is Tyr, Phe or Trp, and
Xaa4为缺失、Ala、Gly、Val、Leu、Ile或Pro。Xaa4 is deletion, Ala, Gly, Val, Leu, Ile, or Pro.
根据本发明的一些实施例,所述呼吸疾病或肺炎由于冠状病毒感染引起;冠状病毒是COVID-19,或者其变异病毒;免疫多肽为具有如下序列的 7P肽:GQTYTSG;该7P肽是所述药物中唯一有效成分。According to some embodiments of the present invention, the respiratory disease or pneumonia is caused by a coronavirus infection; the coronavirus is COVID-19, or a variant virus thereof; the immune polypeptide is a 7P peptide with the following sequence: GQTYTSG; the 7P peptide is the The only active ingredient in the medicine.
所以,本发明的实施对于进一步有效抑制冠状病毒复制的机理研究,以及研制针对冠状病毒感染引起的相关疾病的临床用药和治疗方案,具有显著的价值。Therefore, the implementation of the present invention has significant value for further effectively inhibiting the mechanism of coronavirus replication, as well as for the development of clinical medications and treatment plans for related diseases caused by coronavirus infection.
图1显示COVID-19冠状病毒3CL水解酶(Mpro)的高分率晶体结构。Figure 1 shows the high-resolution crystal structure of COVID-19 coronavirus 3CL hydrolase (Mpro).
图2显示3CL水解酶蛋白的晶体结构中结合了配体分子的结合模式效果,图中:Figure 2 shows the effect of the binding mode of the ligand molecule in the crystal structure of the 3CL hydrolase protein. In the figure:
A显示蛋白晶体结构中天然配体与3CL protease结合模式;A shows the binding mode of the natural ligand and 3CL protease in the protein crystal structure;
B显示蛋白晶体结构中短肽7P对接打分排名第一的结合模式的对接构象结合模式;B shows the docking conformational binding mode of the short peptide 7P in the protein crystal structure, which ranks first in the docking score;
C显示蛋白晶体结构中短肽7P对接打分排名第一的结合模式的对接构象结合模式与蛋白晶体结构中配体的结合模式叠合效果。C shows the superimposing effect of the docking conformational binding mode of the short peptide 7P in the protein crystal structure with the binding mode ranked first in the docking score and the binding mode of the ligand in the protein crystal structure.
图3显示为实验例中短肽7P对接打分排名前10的结合模式的对接构象分布图。Figure 3 shows the docking conformation distribution diagram of the top 10 binding modes of the short peptide 7P docking score in the experimental example.
本发明是在对抗冠状病毒的现有技术和研究基础上的新成果。在冠状病毒复制过程中,位于基因组5'端上的大开放阅读框(ORF)1a/1ab基因负责表达两种大型复制酶聚蛋白(pp)。这些被病毒编码的3CL pro和类木瓜蛋白酶(Papain-like Protease)协同或翻译后裂解,产生16个负责病毒复制的非结构蛋白。3CL pro也被称为主要蛋白酶,因为它在pp1a和pp1ab中总共有11个裂解位点,而类木瓜蛋白酶只有3个裂解位点。 The present invention is a new achievement based on the existing technology and research against the coronavirus. In the process of coronavirus replication, the large open reading frame (ORF) 1a/1ab gene located at the 5'end of the genome is responsible for the expression of two large replicase polyproteins (pp). These virus-encoded 3CL pro and papain-like protease (Papain-like Protease) cooperate or cleave after translation to produce 16 non-structural proteins responsible for virus replication. 3CL pro is also called the main protease because it has 11 cleavage sites in pp1a and pp1ab, while papain-like protease has only 3 cleavage sites.
3CL pro有三个不同的域。域I和II在很大程度上是由几个反平行β桶和连接到域III的长循环区域。域III是由几个球状α螺旋(α-helices)和发挥作用的蛋白质二聚作用。该活性位点位于I和II结构域之间的胰凝乳蛋白酶样褶皱中,含有His41的催化二元体,其作用为质子受体,Cys144/5对底物的羰基碳进行亲核攻击。 3CL pro has three different domains. Domains I and II are largely composed of several anti-parallel β-barrels and long loop regions connected to domain III. Domain III is composed of several globular alpha helices (α-helices) and functioning protein dimerization. The active site is located in the chymotrypsin-like fold between the I and II domains. It contains the catalytic dimer of His41, which acts as a proton acceptor, and Cys144/5 nucleophilic attack on the carbonyl carbon of the substrate.
所有的冠状病毒3CL pro都具有高序列同源性,以及主链结构和底物 守恒。3CL pro的底物结合位点有两个深埋的S1和S2亚位点,浅埋的S1、S3和S4亚位点具有不同程度的溶剂暴露。冠状病毒3CL pro底物特异性主要由P1、P2和P1'位决定。从理论上讲,由于这些病毒具有高度同源的结合位点和底物保守性,有理由预测广谱抑制剂策略可能会成功。因此,本发明的这项研究将为广谱3CL pro抑制剂的鉴定提供进一步的证据。 All coronavirus 3CL pro have high sequence homology, and the main chain structure and substrate are conserved. The substrate binding site of 3CL pro has two deeply buried S1 and S2 subsites, and the shallowly buried S1, S3 and S4 subsites have varying degrees of solvent exposure. The substrate specificity of coronavirus 3CL pro is mainly determined by P1, P2 and P1'. In theory, since these viruses have highly homologous binding sites and substrate conservation, it is reasonable to predict that broad-spectrum inhibitor strategies may be successful. Therefore, this study of the present invention will provide further evidence for the identification of broad-spectrum 3CL pro inhibitors.
参考文献:Michael Berry,Burtram Fielding,Junaid Gamieldien.Human coronavirus OC43 3CL protease and the potential of ML188 as a broad-spectrum lead compound:Homology modelling and molecular dynamic studies.BMC Structural Biology volume 15,Article number:8(2015).References: Michael Berry, Burtram Fielding, Junaid Gamieldien. Human coronavirus OC43 3CL protease and the potential of ML188 as a broad-spectrum lead compound: Homology modelling and molecular number 15 Biology dynamic studies. BMC Volume number, 2015 .
3CL pro也被称为主要蛋白酶(Mpro),在病毒生命周期中起着关键作用,包括多蛋白的处理和病毒复制。多聚蛋白pp1a和pp1ab随后被酶切成16个非结构功能蛋白(nsp1到nsp16),这些蛋白主要参与蛋白水解过程和病毒RNA合成,包括基因组的复制和亚基因组mRNA的合成。剩余的基因组包含9个orf,它们编码4个结构蛋白——穗蛋白(S)、核衣壳蛋白(N)、膜蛋白(M)和包膜蛋白(E),以及5个附属蛋白(3a-c、7a和7b)。 3CL pro is also known as the main protease (Mpro), which plays a key role in the virus life cycle, including the processing of polyproteins and virus replication. The polyproteins pp1a and pp1ab were subsequently cleaved into 16 non-structural functional proteins (nsp1 to nsp16). These proteins are mainly involved in the proteolytic process and viral RNA synthesis, including genome replication and subgenomic mRNA synthesis. The remaining genome contains 9 orf, which encode 4 structural proteins-ear protein (S), nucleocapsid protein (N), membrane protein (M) and envelope protein (E), and 5 accessory proteins (3a -c, 7a and 7b).
本发明以前,以3CL pro为靶点的抑制剂,包括吡啶n-氧化物衍生物、拟肽类似物、共价抑制剂和肽基化合物,都已进行过评估。草药提取物的天然产物可能成为开发抗病毒药物的主要资源。以往的研究表明,天然化合物对SARs-CoV的3CL pro具有抗病毒活性,并干扰病毒复制。目前还没有针对3CL pro的抗病毒药物。 Prior to the present invention, inhibitors targeting 3CL pro , including pyridine n-oxide derivatives, peptidomimetic analogs, covalent inhibitors and peptidyl compounds, have been evaluated. Natural products of herbal extracts may become the main resource for the development of antiviral drugs. Previous studies have shown that natural compounds have antiviral activity against 3CL pro of SARs-CoV and interfere with virus replication. There is currently no antiviral drug for 3CL pro.
参考文献:Sirin Theerawatanasirikul,Chih Jung Kuo,Nanthawan Phetcharat,Porntippa Lekcharoensuk.In silico and in vitro analysis of small molecules and natural compounds targeting the 3CL protease of feline infectious peritonitis virus.Antiviral Research,Volume 174,February 2020,104697.References: Sirin Theerawatanasirikul, Chih Jung Kuo, Nanthawan Phetcharat, Porntippa Lekcharoensuk.Insilico and in Vitro analysis of small molecules and natural compounds. Targeting, the 3CL virus. Protease of Feline, February, 2020. Antivirus.
利用基于结构的药物设计方法进行了抗新型冠状病毒COVID-19的药物筛选工作。研究表明,新型肺炎冠状病毒3CL水解酶可能成为抗新型冠状病毒药物的一个研究靶点,新型冠状病毒的3CL水解酶(3C-like Proteinase,3CL protease,3CL pro)与SARS的相似度达到96%,通过该 策略,提示可获得潜在的3CL水解酶抑制剂。 Using the structure-based drug design method, the drug screening work against the new coronavirus COVID-19 was carried out. Studies have shown that the new pneumonia coronavirus 3CL hydrolase may become a research target for anti-new coronavirus drugs. The similarity of the new coronavirus 3CL hydrolase (3C-like Proteinase, 3CL protease, 3CL pro ) and SARS reaches 96%. Through this strategy, it is suggested that potential 3CL hydrolase inhibitors can be obtained.
根据发明人的研究,冠状病毒在宿主内的生长繁殖依赖于其合成裂解的3CL protease蛋白水解酶,因此3CL protease是研究抑制冠状病毒复制繁殖的重要靶点。此分子模拟对接结果表明人工合成的衍生于丙肝病毒HCV包膜E1-C末端的免疫肽,例如GQTYTSG合成肽,与3CL protease蛋白水解酶活性中心的结合,表现出了该合成肽与3CL protease蛋白水解酶(3CL pro)底物的竞争结合,预期具有抑制冠状病毒(例如COVID-19)复制繁殖的作用,具有了治疗此类冠状病毒感染可能。 According to the inventor’s research, the growth and reproduction of coronaviruses in the host relies on the 3CL protease protease that is synthesized and cleaved. Therefore, 3CL protease is an important target for research on inhibiting the replication and reproduction of coronaviruses. The results of this molecular simulation docking show that artificially synthesized immune peptides derived from the E1-C end of the hepatitis C virus HCV envelope, such as GQTYTSG synthetic peptide, combined with the active center of 3CL protease protease, showing that the synthetic peptide and 3CL protease protein The competitive binding of hydrolase (3CL pro ) substrates is expected to inhibit the replication and reproduction of coronaviruses (such as COVID-19), and it is possible to treat such coronavirus infections.
本发明所研究的免疫多肽,也可称免疫7肽,尤其是7P肽,其本身是一种被在先公开的产物,所以,对于该免疫多肽的定义,获得方法,以及相关的药物,均可参照已有公开的内容。为便于阅读,简单阐述如下。The immune polypeptide studied in the present invention can also be called immune 7 peptide, especially 7P peptide, which itself is a previously disclosed product. Therefore, the definition of the immune polypeptide, the method of obtaining it, and related drugs are all You can refer to the published content. For ease of reading, a brief explanation is as follows.
“药学上可接受的酯”指适于与人或动物的组织接触而且无过多的毒性、刺激或变态反应等的酯。通常,酯化修饰后能降低机体中的蛋白酶对肽的水解。对本发明的肽的末端氨基、羧基或侧链基团进行修饰可以形成药学上可接受的酯。对氨基酸侧链基团的修饰包括但不限于苏氨酸、丝氨酸侧链羟基与羧酸发生的酯化反应。优选末端基团用蛋白质化学领域的技术人员已知的保护性基团保护起来,如乙酰基、三氟乙酰基、Fmoc(9-芴基-甲氧羰基)、Boc(叔丁氧羰基)、Alloc(烯丙氧羰基)、C1-3烷基、C6-12芳烷基等。在本发明的具体实施方式中,我们发现,7P不经修饰也足以在生理条件下进行治疗,所以可以选择不对式I多肽N末端的氨基和C末端的羧基以及氨基酸侧链基团进行修饰,即N末端的化学基团仍旧为第一个氨基酸上的α-氨基(-NHB 2B),C末端的化学基团是C末端氨基酸的羧基(-COOH),因此也称氨基酸7肽。 "Pharmaceutically acceptable ester" refers to an ester suitable for contact with human or animal tissues without excessive toxicity, irritation, or allergic reactions. Generally, esterification modification can reduce the hydrolysis of peptides by proteases in the body. The terminal amino group, carboxyl group or side chain group of the peptide of the present invention can be modified to form a pharmaceutically acceptable ester. Modifications to amino acid side chain groups include, but are not limited to, the esterification reaction of threonine and serine side chain hydroxyl groups with carboxylic acids. Preferably, the terminal group is protected with a protective group known to those skilled in the field of protein chemistry, such as acetyl, trifluoroacetyl, Fmoc (9-fluorenyl-methoxycarbonyl), Boc (tert-butoxycarbonyl), Alloc (allyloxycarbonyl), C1-3 alkyl, C6-12 aralkyl, etc. In the specific embodiment of the present invention, we have found that 7P is sufficient for treatment under physiological conditions without modification, so we can choose not to modify the N-terminal amino group and the C-terminal carboxyl group and amino acid side chain groups of the polypeptide of formula I. That is, the N-terminal chemical group is still the α-amino group (-NHB 2B ) on the first amino acid, and the C-terminal chemical group is the C-terminal amino acid carboxyl group (-COOH), so it is also called amino acid 7 peptide.
“药学上可接受的盐”指适于与人或动物的组织接触而且无过多的毒性、刺激或变态反应等的盐。药学上可接受的盐是本领域熟知的。这种盐可以在本发明多肽的最终分离和纯化的过程中制备,也可以将肽与适当的有机或无机酸或碱反应单独制备。代表性酸加成盐包括但不限于乙酸盐、二己酸盐、藻酸盐、柠檬酸盐、天冬氨酸盐、苯甲酸盐、苯磺酸盐、硫酸氢盐、丁酸盐、樟脑酸盐、樟脑磺酸盐、甘油磷酸盐、半硫酸盐、庚酸盐、己酸盐、富马酸盐、盐酸盐、氢溴酸盐、氢碘酸盐、2-羟 基乙磺酸盐、乳酸盐、马来酸盐、甲磺酸盐、烟酸盐、2-萘磺酸盐、草酸盐、3-苯基丙酸盐、丙酸盐、琥珀酸盐、酒石酸盐、磷酸盐、谷氨酸盐、碳酸氢盐、对甲苯磺酸盐和十一烷酸盐。能用于形成药学上可接受盐的优选的酸是盐酸、氢溴酸、硫酸、磷酸、草酸、马来酸、琥珀酸和柠檬酸。药学上可接受的碱加成盐中的阳离子包括但不限于碱金属或碱土金属离子如锂、钠、钾、钙、镁和铝等,以及非毒性季铵阳离子如铵、四甲基铵、四乙基铵、甲基胺、二甲基胺、三甲基胺、三乙基胺、二乙基胺、乙基胺、二乙胺、乙醇胺、二乙醇胺、哌啶、哌嗪等。优选的碱加成盐包括磷酸盐、tris和乙酸盐。这些盐一般能够增加多肽的溶解性,而且所形成的盐基本上不改变多肽的活性。本发明的多肽可以单独使用,也可以以药学上可接受的盐形式使用。"Pharmaceutically acceptable salt" refers to a salt suitable for contact with human or animal tissues without excessive toxicity, irritation, or allergic reactions. Pharmaceutically acceptable salts are well known in the art. This salt can be prepared during the final separation and purification of the polypeptide of the present invention, or the peptide can be separately prepared by reacting the peptide with a suitable organic or inorganic acid or base. Representative acid addition salts include, but are not limited to, acetate, dihexanoate, alginate, citrate, aspartate, benzoate, benzenesulfonate, bisulfate, butyrate , Camphorate, camphorsulfonate, glycerophosphate, hemisulfate, heptanoate, caproate, fumarate, hydrochloride, hydrobromide, hydroiodide, 2-hydroxyethanesulfonate Acid salt, lactate, maleate, methanesulfonate, nicotinate, 2-naphthalenesulfonate, oxalate, 3-phenylpropionate, propionate, succinate, tartrate , Phosphate, glutamate, bicarbonate, p-toluenesulfonate and undecanoate. The preferred acids that can be used to form pharmaceutically acceptable salts are hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, oxalic acid, maleic acid, succinic acid, and citric acid. Cations in pharmaceutically acceptable base addition salts include, but are not limited to, alkali metal or alkaline earth metal ions such as lithium, sodium, potassium, calcium, magnesium, and aluminum, and non-toxic quaternary ammonium cations such as ammonium, tetramethylammonium, Tetraethylammonium, methylamine, dimethylamine, trimethylamine, triethylamine, diethylamine, ethylamine, diethylamine, ethanolamine, diethanolamine, piperidine, piperazine, etc. Preferred base addition salts include phosphate, tris and acetate. These salts generally can increase the solubility of the polypeptide, and the formed salt does not substantially change the activity of the polypeptide. The polypeptide of the present invention can be used alone or in the form of a pharmaceutically acceptable salt.
在本文中,“药物”、“药物制剂”、“药用制剂”以及简称的“制剂”如未特别说明,可以互换使用,指的是包含药物有效成分的制品,并任选其中还包含药学上可接受的载体。其中,“药学上可接受的载体”指无毒固态、半固态或液态填充剂、稀释剂、佐剂、包裹材料或其他制剂辅料。所用载体可与相应的给药形式相适应,可使用本领域技术人员所知晓的载体配成注射剂、(注射用)冻干粉、喷雾剂、口服溶液、口服混悬液、片剂、胶囊、肠溶片、丸剂、粉剂、颗粒剂、持续释放或延迟释释放等制剂。在本发明的具体实施方式中,通过注射方式给药,使用生理盐水作为载体溶解即可,因此,本发明的药物可以为注射剂或注射用冻干粉。In this article, "drug", "pharmaceutical preparation", "pharmaceutical preparation" and the abbreviated "preparation" can be used interchangeably unless otherwise specified, and refer to a product containing active ingredients of a drug, and optionally it also contains A pharmaceutically acceptable carrier. Among them, "pharmaceutically acceptable carrier" refers to non-toxic solid, semi-solid or liquid fillers, diluents, adjuvants, wrapping materials or other preparation excipients. The carrier used can be compatible with the corresponding administration form, and can be formulated into injections, (for injection) freeze-dried powders, sprays, oral solutions, oral suspensions, tablets, capsules, etc., using carriers known to those skilled in the art. Enteric-coated tablets, pills, powders, granules, sustained release or delayed release formulations. In the specific embodiment of the present invention, the administration is by injection, and it is dissolved in physiological saline as a carrier. Therefore, the drug of the present invention may be an injection or a freeze-dried powder for injection.
为了方便给药,药物可以是单位制剂,即满足一次给药所需活性成分的制剂。常见的单位制剂如一单位(片)片剂、一单位(针)针剂或粉针剂等,其中活性成分的为一次给药所需的量。一次给药所需的量可以方便地计算受试者的体重和该受试者一次用药所需单位体重剂量(在本文中简称为“剂量”)的乘积得到。例如,在制备药物的过程中,通常将成人的体重被定为60kg,可以用该体重值来计算。不同受试者的单位体重剂量可以通过等效剂量换算关系来计算。例如,根据本领域普通技术人员所公知的实验动物与人的等效剂量换算关系(通常可参见FDA、SFDA等药品管理机构的指导意见,也可参见“黄继汉等.药理试验中动物间和动物与人体间的等效剂量换算.中国临床药理学与治疗学,2004Sep;9(9):1069-1072”)可从实验动物的剂量推导出人的有效剂量。如 未特别指出,本文中的“剂量”指大鼠的剂量。通常可以使用6这个系数来换算人和大鼠的剂量。根据剂量,制药商可以换算得到单位制剂中的活性成分含量,用以应用于其制药过程中。综合用药安全、成本和药效,单位制剂中7P或其衍生物的剂量可以为30-300μg/kg大鼠剂量,或40-180μg/kg大鼠剂量,如174、87、或43.5μg/kg大鼠剂量。根据等效剂量换算关系以及人的常规体重,单位制剂含300-3000μg 7P或其衍生物,优选含400-1800μg 7P或其衍生物,如含1740、870、或435μg 7P或其衍生物。In order to facilitate administration, the drug may be a unit preparation, that is, a preparation that satisfies the active ingredients required for one administration. Common unit preparations such as a unit (tablet) tablet, a unit (needle) injection or powder injection, etc., where the active ingredient is the amount required for one administration. The amount required for one administration can be conveniently calculated by multiplying the weight of the subject and the dose per unit body weight required for one administration of the subject (referred to as "dose" herein). For example, in the process of preparing medicines, the weight of an adult is usually set as 60 kg, and this weight value can be used for calculation. The unit body weight dose of different subjects can be calculated through the equivalent dose conversion relationship. For example, according to the equivalent dose conversion relationship between experimental animals and humans known to those of ordinary skill in the art (usually refer to the guidance of FDA, SFDA and other drug regulatory agencies, and also refer to "Huang Jihan et al. Animals and Animals in Pharmacological Tests" Conversion of equivalent dose with human body. Chinese Clinical Pharmacology and Therapeutics, 2004 Sep; 9(9): 1069-1072”) The effective human dose can be derived from the dose of experimental animals. Unless otherwise specified, the "dose" herein refers to the dose for rats. A factor of 6 can usually be used to convert human and rat doses. According to the dosage, the pharmaceutical manufacturer can convert the content of the active ingredient in the unit preparation for application in its pharmaceutical process. Comprehensive medication safety, cost and efficacy, the dose of 7P or its derivatives in a unit preparation can be 30-300μg/kg rat dose, or 40-180μg/kg rat dose, such as 174, 87, or 43.5μg/kg Rat dose. According to the equivalent dose conversion relationship and the normal body weight of a person, the unit preparation contains 300-3000μg 7P or its derivatives, preferably 400-1800μg 7P or its derivatives, such as 1740, 870, or 435μg 7P or its derivatives.
以下实验例中,基于本发明的研究,发明人采用分子对接方法,具体研究了COVID-19病毒靶标蛋白3CL protease与7P肽(GQTYTSG)的结合模式,也进一步研究了7P肽(GQTYTSG)对于3CL protease的活性抑制效果。In the following experimental examples, based on the research of the present invention, the inventors used a molecular docking method to specifically study the binding mode of COVID-19 virus target protein 3CL protease and 7P peptide (GQTYTSG), and further studied the effect of 7P peptide (GQTYTSG) on 3CL. Inhibition of protease activity.
实验例1免疫肽对接实验Experimental Example 1 Immune peptide docking experiment
1.材料与方法1. Materials and methods
1.1蛋白结构准备1.1 Protein structure preparation
利用上海科技大学饶子和课题组解析测定的COVID-19冠状病毒3CL水解酶的复合物晶体结构,是删去其中的水分子与小分子化合物,留下蛋白结构,得到的高分率晶体结构如图1。该晶体结构的坐标来自PDB蛋白质结构数据库(Protein Data Bank,PDB)(ID:6LU7)。The crystal structure of the COVID-19 coronavirus 3CL hydrolase complex analyzed and determined by the research team of Shanghai University of Science and Technology Rao Zihe is to delete the water molecules and small molecular compounds, leaving the protein structure, and the high-resolution crystal structure obtained Figure 1. The coordinates of the crystal structure are from the PDB Protein Data Bank (PDB) (ID: 6LU7).
选取晶体结构中酶活中心的配体结构中心为盒子中心,将盒子大小设置为 包裹整个活性位点。 Select the center of the ligand structure of the enzyme activity center in the crystal structure as the center of the box, and set the box size to Encapsulate the entire active site.
1.2短肽对接1.2 Short peptide docking
采用MDOCK软件包,将上述蛋白结构作为受体,输入7P肽序列,采用以下参数:肽结构模型生成3种,肽构象RMSD值设置为 构象搜索exhaustiveness值设为100,展开分子对接。 Using the MDOCK software package, the above-mentioned protein structure is used as the receptor, and the 7P peptide sequence is input. The following parameters are used: three peptide structure models are generated, and the peptide conformation RMSD value is set to The exhaustiveness value of the conformation search is set to 100, and the molecular docking is expanded.
2.免疫肽对接结果及分析2. Immune peptide docking results and analysis
7P分子对接的结果Results of 7P molecular docking
MDOCK采用一种基础知识的统计式函数来评估短肽与蛋白之间的结合能力。对结合能力以对数反映,作为评价分数(对接打分)。一般 来说,对接打分值是一个负数,打分值越低,代表结合能力越强,或者结合的可能性越大。MDOCK uses a statistical function of basic knowledge to evaluate the binding ability between short peptides and proteins. The binding ability is reflected logarithmically as an evaluation score (matching scoring). Generally speaking, the score value for docking is a negative number. The lower the score value, the stronger the bonding ability or the greater the possibility of bonding.
短肽7P与3CL蛋白结合能力排名前10种结合模式(Model 1至Model 1)的对接打分值如表1所示。其中打分排名第1的结合模式(Model 1),与3CL蛋白晶体结构中配体的结合模式十分相似。参考图2中的A、B、C,A中显示天然配体的结合模式,在彩色图示中以蓝色棍状模型表示(A);打分排名第1的短肽7P结合的对接构象用紫红色棍状模型表示(B),可看到与A中天然配体的结合构象非常相似;将二者叠合的效果也说明了这一点(C)。Table 1 shows the docking scores of the top 10 binding modes (Model 1 to Model 1) of short peptide 7P and 3CL protein binding ability. Among them, the binding mode (Model 1) ranked No. 1 is very similar to the binding mode of the ligand in the crystal structure of the 3CL protein. Refer to Figure 2 A, B, C, and A shows the binding mode of natural ligands, which are represented by a blue stick-shaped model in the color diagram (A); The purple-red stick model represents (B), and it can be seen that the binding conformation of the natural ligand in A is very similar; the effect of superimposing the two also illustrates this point (C).
将排名前10的所有结合模式显示出来(参考图3),其中3CL蛋白用飘带模型表示(彩色图片中显示为绿色),晶体结构中的天然配体为相对粗的棍状模型表示(彩色图片中显示为蓝色),7P对接构象用相对细的棍状模型表示(彩色图片中显示为紫红色),明显观察到都比较集中。Display all the top 10 binding modes (refer to Figure 3). The 3CL protein is represented by a ribbon model (shown in green in the color picture), and the natural ligand in the crystal structure is represented by a relatively thick stick model (color picture) (Shown in blue in the middle), the 7P docking conformation is represented by a relatively thin rod-shaped model (shown in purple in the color picture), and it is obviously observed that they are more concentrated.
发现大部分对接构象集中于酶活口袋区域,仅有3个构象分布于其他区域,因此可推测短肽7P可能结合于3CL protease的酶活口袋区,与天然底物竞争性占据该口袋区域。It is found that most of the docking conformations are concentrated in the enzyme active pocket region, and only 3 conformations are distributed in other regions. Therefore, it can be speculated that the short peptide 7P may bind to the enzyme active pocket region of 3CL protease and compete with the natural substrate to occupy this pocket region.
表1短肽7P与3CL protease的打分排名前10种结合模式Table 1 The top 10 binding modes of short peptide 7P and 3CL protease
4.结论4 Conclusion
分别采用MDOCK和AutoDock Vina,将目标分子对接于靶标3CL protease的结构上。7P肽有结合于3CL蛋白酶活口袋区的对接构象,可以认为短肽7P结合于3CL protease的酶活口袋区,与天然底物竞争性占据该 口袋区域。Using MDOCK and AutoDock Vina respectively, the target molecule is docked to the structure of the target 3CL protease. The 7P peptide has a docking conformation that binds to the active pocket region of 3CL protease. It can be considered that the short peptide 7P binds to the active pocket region of 3CL protease and competes with the natural substrate to occupy the pocket region.
实验例2 3CL protease酶活性影响实验Experimental example 2 3CL protease enzyme activity influence experiment
本实验例考察7P肽、对照多肽对3C-like Proteinase酶活性的影响,原理主要是:荧光基团EDANS和淬灭基团DABCYL均被连接到3CL Pro蛋白酶的天然底物(如Dabcyl-KTSAVLQSGFRKME-Edans)上,当该底物未被切断时,DABCYL可猝灭EDANS荧光,从而检测不到荧光;当该底物被3CL Pro切断时,EDANS荧光不再被DABCYL猝灭,随即可检测到EDANS荧光,因此,荧光强度越弱,说明天然底物被3CL Pro切断的程度越低,进而说明3CL Pro的酶活越低,即证明蛋白酶抑制剂对3CL Pro的酶活抑制越强。因此,蛋白酶抑制剂(如7P肽)的有效性可凭借EDANS荧光强度的变化进行监测。 This experimental example investigates the effect of 7P peptide and control peptide on the enzyme activity of 3C-like Proteinase. The main principle is: both the fluorescent group EDANS and the quenching group DABCYL are connected to the natural substrate of 3CL Pro protease (such as Dabcyl-KTSAVLQSGFRKME- Edans), when the substrate is not cut off, DABCYL can quench the fluorescence of EDANS, so that no fluorescence can be detected; when the substrate is cut off by 3CL Pro , the fluorescence of EDANS is no longer quenched by DABCYL, and then EDANS can be detected. Fluorescence, therefore, the weaker the fluorescence intensity, the lower the degree to which the natural substrate is cleaved by 3CL Pro , and the lower the enzyme activity of 3CL Pro , which proves that the protease inhibitor inhibits the enzyme activity of 3CL Pro more strongly. Therefore, the effectiveness of protease inhibitors (such as 7P peptide) can be monitored by the changes in the fluorescence intensity of EDANS.
1、试剂及样品准备1. Reagents and sample preparation
(1)缓冲液(buffer):20mM的Tris-HCl缓冲液,pH 7.0;(1) Buffer: 20mM Tris-HCl buffer, pH 7.0;
(2)标准酶液:3C-like Proteinase溶于去离子水中形成的浓度为1.2ug/ul的酶液;(2) Standard enzyme solution: 3C-like Proteinase dissolved in deionized water to form an enzyme solution with a concentration of 1.2ug/ul;
(3)底物溶液:Dabcyl-KTSAVLQSGFRKME-Edans(冠状病毒主蛋白酶荧光底物,以下简称底物)以3mM的浓度储存在去离子水中形成的底物溶液;(3) Substrate solution: Dabcyl-KTSAVLQSGFRKME-Edans (coronavirus main protease fluorescent substrate, hereinafter referred to as substrate) is stored in deionized water at a concentration of 3mM.
(4)受试物:a)7P肽用蒸馏水溶解为1mg/ml的7P肽溶液;b)对照多肽用蒸馏水溶解为1mg/ml的对照多肽溶液;该对照多肽通过化学合成获得,其序列为RKNHVGL,与7P肽氨基酸数量及序列较为接近,以排除多肽序列的非特异性。(4) Test substance: a) The 7P peptide was dissolved in distilled water to a 1mg/ml 7P peptide solution; b) The control polypeptide was dissolved in distilled water into a 1mg/ml control polypeptide solution; the control polypeptide was obtained by chemical synthesis, and its sequence is RKNHVGL is close to the 7P peptide amino acid number and sequence to exclude the non-specificity of the peptide sequence.
(5)检测仪器:酶标仪,采用96孔板/酶标版。(5) Testing equipment: Microplate reader, using 96-well plate/enzyme plate.
2、试验过程2. Test process
2.1 7P肽对3C-like Proteinase酶活的影响2.1 The effect of 7P peptide on 3C-like Proteinase activity
(1)绘制标准曲线:取标准酶液,用缓冲液按2倍梯度稀释,分别得到酶量为6000pmol的第1稀释液、酶量是第一稀释液的二分之一倍的第2稀释液……酶量是第10稀释液的二分之一倍的第11稀释液(共获得11组稀释液),采用酶标仪测试每份稀释液的吸光度值,测定过程如下:各取100μL第1稀释液至第11稀释液,分别置于96孔板/酶标版的孔中(每孔100μL),在340nm波长处激发,535nm波长处测定吸光度 值(RFU值),以各稀释液中的酶量为横坐标、RFU值为纵坐标绘制标准曲线,并拟合得到标准曲线的斜率。(1) Draw a standard curve: take the standard enzyme solution and dilute it in a 2-fold gradient with buffer to obtain the first dilution with an enzyme amount of 6000pmol and the second dilution with a half-fold of the enzyme amount of the first dilution. Solution... The amount of enzyme is one-half times of the 10th dilution of the 11th dilution (a total of 11 sets of dilutions are obtained). Use a microplate reader to test the absorbance of each dilution. The measurement process is as follows: each take 100μL The 1st dilution to the 11th dilution were placed in the wells of the 96-well plate/enzyme standard plate (100μL per well), excited at the wavelength of 340nm, and measured the absorbance value (RFU value) at the wavelength of 535nm. The enzyme amount in is the abscissa and the RFU value is the ordinate to draw a standard curve, and fit the slope of the standard curve.
(2)测定过程(2) Measurement process
实验组:test group:
(A)取4份上述底物溶液,每份的底物溶液体积相同;采用上述缓冲溶液分别将该4份底物溶液稀释为底物浓度为60μM的第三混合液,向每份第三混合液中加入7P肽(抑制剂)溶液,同时配合使用蒸馏水将4份第三混合液定容至90μl,使定容后的4份第三混合溶液中的7P肽浓度分别为50μM、25μM、12.5μM、6.25μM,得到四份7P肽浓度分别为50μM、25μM、12.5μM、6.25μM的第四混合液;(A) Take 4 parts of the above-mentioned substrate solution, each of which has the same volume; use the above-mentioned buffer solution to dilute the 4 parts of the substrate solution into a third mixed solution with a substrate concentration of 60μM, and add to each third Add 7P peptide (inhibitor) solution to the mixed solution and distilled water to dilute 4 parts of the third mixed solution to 90 μl, so that the 7P peptide concentration in the 4 parts of the third mixed solution after constant volume is 50 μM, 25 μM, 12.5μM, 6.25μM, four fourth mixtures with 7P peptide concentrations of 50μM, 25μM, 12.5μM, 6.25μM were obtained;
(B)将上述4份第四混合液分别于37℃孵育5min;然后向每份第四混合液中加入10μL上述酶液,混匀,分别得到4份第五混合液(酶液系数倍数为10倍);(B) Incubate the above 4 parts of the fourth mixture at 37°C for 5 min; then add 10 μL of the above enzyme solution to each part of the fourth mixture, and mix well to obtain 4 parts of the fifth mixture (enzyme coefficient multiples are 10 times);
(C)分别将每份第五混合液在340nm波长处激发,535nm波长处测定每份第五混合液在10分钟内的荧光强度变化,每1分钟读取一次RFU值,计算每分钟荧光强度变化值RFU Test(检测仪器自动读取); (C) Excite each fifth mixed solution at a wavelength of 340nm, measure the fluorescence intensity change of each fifth mixed solution within 10 minutes at a wavelength of 535nm, read the RFU value every 1 minute, and calculate the fluorescence intensity per minute Change value RFU Test (automatically read by testing instrument);
空白对照组:取10μL上述缓冲液替换步骤(B)中的酶液进行上述过程,测得空白对照组的每分钟荧光强度变化值RFU Blank; Blank control group: Take 10 μL of the enzyme solution in the above-mentioned buffer replacement step (B) to perform the above process, and measure the change in fluorescence intensity per minute RFU Blank of the blank control group;
酶活(Specific Activity)计算方式如下:The calculation method of Specific Activity is as follows:
其中,△RFU=RFU Test-RFU Blank;稀释倍数=10;酶量=10μL×1.2ug/ul。 Among them, △RFU=RFU Test- RFU Blank ; dilution factor=10; enzyme amount=10μL×1.2ug/ul.
2.2对照多肽(RKNHVGL)对3C-like Proteinase酶活的影响2.2 The effect of control peptide (RKNHVGL) on 3C-like Proteinase activity
将上述2.1实验组中的7P肽溶液替换为对照多肽溶液,按照2.1的实验过程测定对照多肽对3C-like Proteinase酶活的影响,根据不同对照多肽浓度的第三混合溶液测得的酶活见表2。Replace the 7P peptide solution in the above 2.1 experimental group with the control peptide solution, and determine the effect of the control peptide on the 3C-like protein enzyme activity according to the experimental procedure in 2.1. The enzyme activity measured according to the third mixed solution of different control peptide concentrations Table 2.
表2不同抑制剂浓度对应的3C-like Proteinase酶活Table 2 3C-like Proteinase activity corresponding to different inhibitor concentrations
从检测结果可以看到,对照多肽对3C-like Proteinase酶活基本没有影响,而7P肽对3C-like Proteinase酶活有明显的抑制效果。It can be seen from the test results that the control peptide has basically no effect on the 3C-like Proteinase activity, while the 7P peptide has a significant inhibitory effect on the 3C-like Proteinase activity.
需要特别指出的是,具体实例和附图仅是为了说明,并不构成对本发明范围的限制。显然本领域的普通技术人员可以根据本文说明,在本发明的范围内对本发明做出各种各样的修正和改变,这些修正和改变也纳入本发明的范围内。It should be particularly pointed out that the specific examples and drawings are only for illustration and do not constitute a limitation on the scope of the present invention. Obviously, those of ordinary skill in the art can make various modifications and changes to the present invention within the scope of the present invention based on the description herein, and these modifications and changes are also included in the scope of the present invention.
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