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WO2019046768A8 - Séquençage symbolique d'adn et d'arn par codage de séquences - Google Patents

Séquençage symbolique d'adn et d'arn par codage de séquences Download PDF

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Publication number
WO2019046768A8
WO2019046768A8 PCT/US2018/049173 US2018049173W WO2019046768A8 WO 2019046768 A8 WO2019046768 A8 WO 2019046768A8 US 2018049173 W US2018049173 W US 2018049173W WO 2019046768 A8 WO2019046768 A8 WO 2019046768A8
Authority
WO
WIPO (PCT)
Prior art keywords
sequence encoding
dna
sequencing
symbolic
rna via
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2018/049173
Other languages
English (en)
Other versions
WO2019046768A1 (fr
Inventor
David Yu Zhang
Yan Yan
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
William Marsh Rice University
Original Assignee
William Marsh Rice University
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by William Marsh Rice University filed Critical William Marsh Rice University
Publication of WO2019046768A1 publication Critical patent/WO2019046768A1/fr
Publication of WO2019046768A8 publication Critical patent/WO2019046768A8/fr
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6862—Ligase chain reaction [LCR]

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

L'invention concerne de nouvelles compositions et des procédés de profilage d'ADN et d'ARN par séquençage de nouvelle génération (NGS). En particulier, des séquences d'acides nucléiques cibles sont codées par séquences. Le codage par séquences "traduit" stœchiométriquement les séquences d'acides nucléiques cibles en mots de code courts de conception rationnelle qui codent de manière compacte et résistant aux erreurs les informations de séquence des cibles et peuvent être séquencés de manière efficace et précise par des plates-formes NGS de lectures courtes.
PCT/US2018/049173 2017-08-31 2018-08-31 Séquençage symbolique d'adn et d'arn par codage de séquences Ceased WO2019046768A1 (fr)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201762552652P 2017-08-31 2017-08-31
US62/552,652 2017-08-31

Publications (2)

Publication Number Publication Date
WO2019046768A1 WO2019046768A1 (fr) 2019-03-07
WO2019046768A8 true WO2019046768A8 (fr) 2019-12-05

Family

ID=65526066

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2018/049173 Ceased WO2019046768A1 (fr) 2017-08-31 2018-08-31 Séquençage symbolique d'adn et d'arn par codage de séquences

Country Status (1)

Country Link
WO (1) WO2019046768A1 (fr)

Families Citing this family (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10650312B2 (en) 2016-11-16 2020-05-12 Catalog Technologies, Inc. Nucleic acid-based data storage
AU2017363139B2 (en) 2016-11-16 2023-09-21 Catalog Technologies, Inc. Nucleic acid-based data storage
EP3766077A4 (fr) 2018-03-16 2021-12-08 Catalog Technologies, Inc. Procédés chimiques pour le stockage de données reposant sur des acides nucléiques
JP7576536B2 (ja) 2018-08-03 2024-10-31 カタログ テクノロジーズ， インコーポレイテッド 誤り保護とともに核酸に基づくデータを記憶および読むためのシステムおよび方法
AU2020268440A1 (en) 2019-05-09 2021-12-02 Catalog Technologies, Inc. Data structures and operations for searching, computing, and indexing in DNA-based data storage
WO2021072398A1 (fr) 2019-10-11 2021-04-15 Catalog Technologies, Inc. Sécurité et authentification par acide nucléique
EP4211689A1 (fr) * 2020-09-08 2023-07-19 Catalog Technologies, Inc. Systèmes et procédés d'écriture par séquençage d'acides nucléiques
US12474994B2 (en) 2022-12-05 2025-11-18 Western Digital Technologies, Inc. Preprocessing for correcting insertions and deletions in DNA data storage
US20250088203A1 (en) * 2023-09-11 2025-03-13 Western Digital Technologies, Inc. Multi-Tier Error Correction Codes for DNA Data Storage

Family Cites Families (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7361489B2 (en) * 2001-10-15 2008-04-22 Mount Sinai School Of Medicine Of New York University Nucleic acid amplification methods
WO2007041621A2 (fr) * 2005-10-03 2007-04-12 Xingsheng Sean Ling Sequençage assiste par hybridation et effectue avec une structure de nanopore
US20110172975A1 (en) * 2009-08-19 2011-07-14 University Of Sao Paulo Generation and reproduction of dna sequences and analysis of polymorphisms and mutations by using error-correcting codes
AU2012255121B2 (en) * 2011-05-17 2017-03-09 Dxterity Diagnostics Incorporated Methods and compositions for detecting target nucleic acids
US20140302486A1 (en) * 2011-09-02 2014-10-09 President And Fellows Of Harvard College Systems and methods for detecting biomarkers of interest
JP6484177B2 (ja) * 2012-12-07 2019-03-13 インヴァイティ コーポレイションＩｎｖｉｔａｅ Ｃｏｒｐｏｒａｔｉｏｎ 多重核酸検出方法

Also Published As

Publication number Publication date
WO2019046768A1 (fr) 2019-03-07

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