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WO2018037120A1 - Prodrugs activated by reactive oxygen species for use in the treatment of inflammatory diseases and cancer - Google Patents

Prodrugs activated by reactive oxygen species for use in the treatment of inflammatory diseases and cancer Download PDF

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Publication number
WO2018037120A1
WO2018037120A1 PCT/EP2017/071457 EP2017071457W WO2018037120A1 WO 2018037120 A1 WO2018037120 A1 WO 2018037120A1 EP 2017071457 W EP2017071457 W EP 2017071457W WO 2018037120 A1 WO2018037120 A1 WO 2018037120A1
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methyl
amino
compound
group
phenyl
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French (fr)
Inventor
Jorge PEIRÓ CADAHÍA
Mads Hartvig Clausen
Jon Bondebjerg
Christian Abildgaard HANSEN
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Danmarks Tekniske Universitet
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Danmarks Tekniske Universitet
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    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07DHETEROCYCLIC COMPOUNDS
    • C07D487/00Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00
    • C07D487/02Heterocyclic compounds containing nitrogen atoms as the only ring hetero atoms in the condensed system, not provided for by groups C07D451/00 - C07D477/00 in which the condensed system contains two hetero rings
    • C07D487/04Ortho-condensed systems
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P29/00Non-central analgesic, antipyretic or antiinflammatory agents, e.g. antirheumatic agents; Non-steroidal antiinflammatory drugs [NSAID]
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P35/00Antineoplastic agents
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07FACYCLIC, CARBOCYCLIC OR HETEROCYCLIC COMPOUNDS CONTAINING ELEMENTS OTHER THAN CARBON, HYDROGEN, HALOGEN, OXYGEN, NITROGEN, SULFUR, SELENIUM OR TELLURIUM
    • C07F5/00Compounds containing elements of Groups 3 or 13 of the Periodic Table
    • C07F5/02Boron compounds
    • C07F5/025Boronic and borinic acid compounds

Definitions

  • the present invention relates to prodrugs which are activated predominantly or exclusively in inflammatory tissue. More particularly, the present invention relates to prodrugs of methotrexate and derivatives thereof, which are selectively activated by Reactive Oxygen Species (ROS) in inflammatory tissues associated with cancer and inflammatory diseases such as rheumatoid arthritis (RA), juvenile dermatomyositis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, Crohn's disease, colitis ulcerosa, multiple sclerosis, Amyotropic Lateral Sclerosis (ALS), atopic dermatitis, eczema etc.
  • ROS Reactive Oxygen Species
  • RA rheumatoid arthritis
  • Prodrugs are masked forms of pharmacologically active agents designed to undergo in vivo activation by specific stimuli.
  • prodrug chemical moieties that makes the drug in question inactive in healthy tissue and selectively activated in diseased tissue the side-effect profile and the selectivity may be improved significantly.
  • ROS Reactive Oxygen Species
  • Methotrexate is a well-known anti-cancer drug, a so-called anti-folate acting by inhibiting the metabolism of folic acid via dihydrofolate reductase. Methotrexate is also widely used as a disease- modifying treatment for some autoimmune diseases, including rheumatoid arthritis, juvenile dermatomyositis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, and Crohn's disease. US 2015/0005352 Al discloses ROS-sensitive prodrug compositions and methods of treating ROS- associated diseases by administering the ROS-sensitive prodrug compositions.
  • WO 2012/123076 Al relates to ferrocene-based compounds and their use as ROS-regulating prodrugs.
  • Therapeutic Delivery 2012, 3, 823-833 discloses the use of boronic acids/esters as triggers for developing ROS-activated anticancer prodrugs that target cancer cells.
  • ACHILLI, C. ET AL. "Folic acid-conjugated 4-Amino-Phenylboronate, a Boron-Containing Compound Designed for Boron Neutron Capture Therapy, is an Unexpected Agonist for Human Neutrophils and Platelets", CHEM BIO DRUG DES, vol. 83, 2013, p. 532-540 discloses folic acid-conjugated 4-amino- phenylboronate as a possible compound for the selective delivery of 10 B in Boron Neutron Capture Therapy (BNCT).
  • BNCT Boron Neutron Capture Therapy
  • ROSOWSKY A ET AL. "SYNTHESIS OF BIOLOGICAL ACTIVITY OF METHOTREXATE ANALOGUES WITH TWO ACID GROUPS AND A HYDROPHOBIC AROMATIC RING IN THE SIDE CHAIN", JOURNAL OF MEDICINAL CHEMISTRY AMERICAN CHEMICAL SOCIETY, US, vol. 34, no. 2, 1 January 1991, p. 574-579 discloses Y-(m-carboxyanilide) and Y-(m-boronoanilide) deivatives of methotrexate and ⁇ - (m-carboxyanilide) derivatives of aminopterin.
  • US 2013/045949 Al discloses compounds that may be selectively activated to produce active anci- cancer agents in tumor cells.
  • US 2014/0378673 Al relates to hypoxia selective prodrugs.
  • prodrugs of ROS-sensitive drug compositions in particular prodrugs of methotrexate, which may be used for site-specific treatment, are stable and lend themselves for up-scaling.
  • prodrugs of ROS-sensitive drug compositions in particular prodrugs of methotrexate, which are selectively activated in inflammatory tissues, have a beneficial cytotoxicity in target cells, low (no) cytotoxicity in healthy cells, are stable, and have a satisfactory bioavailability at the intended site of action.
  • methotrexate of formula I are ROS-sensitive and are selectively activated in inflammatory tissues and thus lend themselves for site-specific treatment with methotrexate.
  • the present invention relates to a compound of the formula I
  • Rl and R2 are independently selected from the group consisting of hydrogen and a moiety of the formula II, III, IV, VII, VIII, IX, X, XI, or XII
  • R3 is selected from the group consisting of hydrogen, Ci -6 alkyl, C 2 - 6 alkenyl, C 2 - 4 alkynyl, C 5 -i 2 aryl, C 4 . 11 heteroaryl and a moiety of the formula II, III, IV, VII, VIII, IX, X, XI, or XII above;
  • R4 and R5 are independently selected from the group consisting of OH, 0-Ci- 6 alkyl, 0-C 2 - 6 alkenyl, 0-C 5 -i 2 aryl, 0-C 4 -uheteroaryl and a moiety of the formula V, VI, XIII, XIV, XV, XVI, or XVII;
  • R6, R7 and R12 are independently selected from the group consisting of hydrogen, CF 3 , C 2 - 6 alkenyl, C 5 -i 2 aryl, and C 4 -uheteroaryl ;
  • R8 and R9 are independently hydroxyl groups or R8 and R9 form, together with the intervening B and O atoms, a pinacol, catechol, diethanolamine, N-methyldiethanolamine or N- methyliminodiacetic acid (MIDA) boronate group;
  • MIDA N-methyliminodiacetic acid
  • W and Q are independently C or N; wherein each of X, Y and Z are selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF 3 , Ci -6 alkyl, Ci- 6 alkoxy, C 2 - 6 alkenyl, C 2 - 6 alkenyloxy, C 6 -i 2 aryl, C 4 -uheteroaryl ; wherein each of said Ci- 6 alkyl, C 2 - 6 alkenyl, C 6 -i 2 aryl, C 4 -uheteroaryl may be substituted by one or more substituents selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF 3 , and Ci- 6 alkyl; and each of a, b and c are integers in the range 0-4;
  • X' and Y' are independently S or O, and R', R", R'" and R"" are independently selected from hydrogen, Ci- 5 alkyl, C 2 - 6 alkenyl, C 5 -i 2 aryl, C 4 -uheteroaryl, and Ci- 5 alkyl-C 5 -i 2 aryl ; wherein, if each of Rl, R2 and R3 are different from a moiety selected from a moiety of the formula II, III, IV, VII, VIII, IX, X, XI, or XII then at least one of R4 and R5 is a moiety of the formula V, XIII, XIV, XV, XVI, or XVII; as well as pharmaceutically acceptable salts, solvates, and stereoisomers thereof.
  • the present invention relates to a method for the preparation of a compound according to the invention, comprising the steps: a) Providing methotrexate (MTX) of the formula 12 or aminopterin (AMT) of the formula 31
  • RIO and Rl l is a leaving group LG; and c) Reacting optionally protected MTX (12) or optionally protected aminopterin (31) with a compound of formula Ila, Ilia, IVa, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa to obtain a compound of formula I according to the invention;
  • step c) or d) optionally reacting the compound obtained in step c) or d), as appropriate, with a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa, followed by an optional deprotection step to obtain a compound of formula I according to the invention.
  • a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa followed by an optional deprotection step to obtain a compound of formula I according to the invention.
  • a peptide coupling agent e.g . BOP, PyBOP, DCC, EDC, HATU, HOBt, etc. followed by addition of a compound of the formula XVIIIa, XlXa, or XXa, and a final deprotection step when needed, to obtain a compound of the formula I.
  • Suitable coupling agents are known to a person skilled in the art and are disclosed in e.g . Chem. Rev. , 2011, 111 (11), 6557-6602.
  • the present invention relates to a pharmaceutical composition
  • a pharmaceutical composition comprising a compound according to the invention, optionally in combination with one or more excipients.
  • the present invention relates to a compound according to the invention as a prodrug for the treatment of inflammatory diseases or cancer.
  • FIGURE 2 shows MCF-7 in vitro cell viability assay incubated with compounds 12 (methotrexate) and prodrug 16
  • FIGURE 3 shows in vitro cell viability study of MCF-7 cells incubated for 48 h with 0.25, 0.062 and 0.015 ⁇ concentrations of compounds 12 (methotrexate) and 16;
  • FIGURE 4 shows NCI-H460 in vitro cell viability assay incubated with compounds 12 (methotrexate) and prodrug 16
  • FIGURE 6 shows activation of prodrugs under oxidative conditions (H 2 0 2 );
  • FIGURE 7 shows NCI-H460 in vitro cell viability assay incubated with compounds 31 (aminopterin) and prodrug 23;
  • FIGURE 8 shows MCF-7 in vitro cell viability assay incubated with compounds 31 (aminopterin) and prodrug 23;
  • alkyl means a linear, cyclic or branched hydrocarbon group having 1 to 24 carbon atoms, such as methyl, ethyl, propyl, /so-propyl, cyclopropyl, butyl, /so-butyl, tert-butyl, cyclobutyl, pentyl, cyclopentyl, hexyl, and cyclohexyl .
  • alkenyl means a linear, cyclic or branched hydrocarbon groups having 2 to 24 carbon atoms, and comprising (at least) one unsaturated bond .
  • alkenyl groups are vinyl, allyl, butenyl, pentenyl, hexenyl, heptenyl, octenyl, nonenyl and decaenyl .
  • Preferred examples of alkenyl are vinyl, allyl, butenyl, especially allyl .
  • alkynyl means a linear, cyclic or branched hydrocarbon groups having 2 to 24 carbon atoms, and comprising (at least) one triple bond. Examples of alkynyl groups are acetylene, propynyl, butynyl, pentynyl, and hexynyl.
  • halogen includes fluoro, chloro, bromo, and iodo.
  • alkoxy refers to a group -OR, wherein R is alkyl as defined above.
  • alkenyloxy refers to a group -OR, wherein R is alkenyl as defined above.
  • aryl refers to an unsaturated cyclic system.
  • Aryl groups may comprise from 4-12 atoms, suitably from 6-8 atoms, most suitably 6 atoms.
  • “Aryl” is preferably phenyl (-C 5 H 5 ).
  • aromatic is intended to mean a carbocyclic ring system, such as phenyl, naphthyl, 1,2,3,4-tetrahydronaphthyl, anthracyl, phenanthracyl, pyrenyl, benzopyrenyl, fluorenyl and xanthenyl.
  • heteroaryl groups are oxazolyl, isoxazolyl, thiazolyl, isothiazolyl, pyrrolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, pyrazinyl, pyridazinyl, triazinyl, coumaryl, furanyl, thienyl, quinolyl, benzothiazolyl, benzotriazolyl, benzodiazolyl, benzooxozolyl, phthalazinyl, phthalanyl, triazolyl, tetrazolyl, isoquinolyl, acridinyl, carbazolyl, dibenzazepinyl, indolyl, benzopyrazolyl, phenoxazonyl.
  • heteroaryl groups are benzimidazolyl, oxazolyl, isoxazolyl, thiazolyl, isothiazolyl, pyrrolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, pyrazinyl, pyridazinyl, furyl, thienyl, quinolyl, triazolyl, tetrazolyl, isoquinolyl, indolyl in particular benzimidazolyl, pyrrolyl, imidazolyl, pyridinyl, pyrimidinyl, furyl, thienyl, quinolyl, tetrazolyl, and isoquinolyl.
  • pharmaceutically acceptable salt is intended to indicate salts prepared by reacting a compound of formula I with a suitable inorganic or organic acid, such as hydrochloric, hydrobromic, hydroiodic, sulfuric, nitric, phosphoric, formic, acetic, 2,2-dichloroacetic, choline, adipic, ascorbic, L- aspartic, L-glutamic, galactaric, lactic, maleic, L-malic, phthalic, citric, propionic, benzoic, glutaric, gluconic, D-glucuronic, methanesulfonic, salicylic, succinic, malonic, tartaric, benzenesulfonic, ethane-l,2-disulfonic, 2-hydroxy ethanesulfonic acid, toluenesulfonic, sulfamic or fumaric acid .
  • a suitable inorganic or organic acid such as hydrochloric, hydrobromic, hydroiodic,
  • Pharmaceutically acceptable salts of compounds of formula I may also be prepared by reaction with a suitable base such as sodium hydroxide, potassium hydroxide, magnesium hydroxide, calcium hydroxide, ammonia, or suitable non-toxic amines, such as lower alkylamines, for example triethylamine, hydroxy-lower alkylamines, for example 2-hydroxyethylamine, bis-(2-hydroxyethyl)- amine, cycloalkylamines, for example dicyclohexylamine, or benzylamines, for example ⁇ , ⁇ ' - dibenzylethylenediamine, and dibenzylamine, or L-arginine or L-lysine.
  • a suitable base such as sodium hydroxide, potassium hydroxide, magnesium hydroxide, calcium hydroxide, ammonia, or suitable non-toxic amines, such as lower alkylamines, for example triethylamine, hydroxy-lower alkylamines, for example 2-hydroxyethyl
  • solvate is intended to indicate a species formed by interaction between a compound, e.g . a compound of formula I, and a solvent, e.g. alcohol, glycerol or water, wherein said species is in a solid form .
  • a solvent e.g. alcohol, glycerol or water
  • water is the solvent
  • said species is referred to as a hydrate.
  • the compounds of the formula I according to the invention may be prepared by the following steps: a) Providing methotrexate (MTX) of the formula 12 or aminopterin (AMT) of the formula 31 or any protected version of them. ;
  • R4, R5, R6, R7, R8, R9, R12, R', R", R'", R"", W, Q, X, X', Y, Y' Z, a, b, c are as defined above,
  • RIO and Rll is a leaving group LG; and c) Reacting optionally protected MTX ( 12) or optionally protected aminopterin (31) with a compound of formula Ila, Ilia, IVa, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa to obtain a compound of formula I according to the invention ;
  • step c) or d) optionally reacting the compound obtained in step c) or d), as appropriate, with a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa, followed by an optional deprotection step to obtain a compound of formula I according to the invention .
  • a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa followed by an optional deprotection step to obtain a compound of formula I according to the invention .
  • Methotrexate (MTX) of the formula 12 or aminopterin of the formula 31 are prepared with protecting groups at the desired positions when necessary. Suitable protective groups are known to a person skilled in the art and are disclosed in e.g . Wuts, P. G . M . & Greene, T. W. Greene's Protective Groups in Organic Synthesis. (Wiley, 2006) .
  • Step b A non-limiting example of the process step a can be found in Preparation Example 8, 9 and 21 below. Step b
  • a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa may be provided commercially or may be prepared by a method known per se from commercially available starting compounds.
  • Non-limiting examples of possible leaving groups include CI, Br, I, CDI, p-nitrophenol, etc..
  • a compound of the formula Ila, Ilia or IVa may be prepared from the corresponding alcohol, transforming it into reactive species such a chloroformate or halide.
  • Non-limiting examples are shown in Preparation Examples 1, 2 and 3, wherein the synthesis of compounds 1 , 3 and 5 is illustrated .
  • a compound of the formula XXIa may be prepared from the corresponding amine, transforming it into the reactive isocyanate.
  • Non-limiting examples are shown in Preparation Example 22, wherein the synthesis of compound 34 is illustrated .
  • Step c Optionally protected methotrexate (MTX) of the formula 12 or aminopterin of the formula 31 is reacted with one or more compounds of the formula Ila, Ilia, IVa, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, XXIIIa in a manner known per se.
  • Illustrative, non-limiting examples of said reaction can be found in Examples 1, 2, 3, 4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 below.
  • Step e The compound obtained in step c) or d), as appropriate, may optionally be reacted with a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa, followed by an optional deprotection step, to obtain a compound of formula I according to the invention.
  • Illustrative, non-limiting examples of said reaction can be found in Examples 19, 20, 21, 22, 23, 24 below.
  • a peptide coupling agent e.g . BOP, PyBOP, DCC, EDC, HATU, HOBt, etc. followed by addition of a compound of the formula XVIIIa, XlXa, or XXa, and a final deprotection step when needed, to obtain a compound of the formula I.
  • Suitable coupling agents are known to a person skilled in the art and are disclosed in e.g . Chem. Rev. , 2011, 111 (11), 6557-6602.
  • An embodiment of the invention is a compound of the formula I, wherein Rl and R2 are independently selected from the group consisting of hydrogen and a moiety of the formula II, III, or IV.
  • An embodiment of the invention is a compound of the formula I, wherein R3 is selected from the group consisting of hydrogen, Ci_ 5 alkyl, C 2 - 5 alkenyl, C 2 . 4 alkynyl, C 5 _i 2 aryl, C 4 .nheteroaryl and a moiety of the formula II, III, or IV.
  • An embodiment of the invention is a compound of the formula I, wherein R4 and R5 are independently selected from the group consisting of OH, 0-Ci- 6 alkyl, 0-C 2 - 6 alkenyl, 0-C 6 -i 2 aryl, O- C 4 -uheteroaryl and a moiety of the formula V, or VI
  • An embodiment of the invention is a compound of the formula I, wherein Rl and R2 are independently selected from the group consisting of hydrogen and a moiety of the formula II, III, or IV;
  • R3 is selected from the group consisting of hydrogen, Ci- 6 alkyl, C 2 - 6 alkenyl, C 2 . 4 alkynyl, C 6 -i 2 aryl, C 4 . 11 heteroaryl and a moiety of the formula II, III, or IV;
  • R4 and R5 are independently selected from the group consisting of OH, 0-Ci- 6 alkyl, 0-C 2 - 6 alkenyl, 0-C 6 -i 2 aryl, 0-C 4 -uheteroaryl and a moiety of the formula V, or VI; and wherein, if each of Rl, R2 and R3 are different from a moiety selected from a moiety of the formula II, III, and IV, then at least one of R4 and R5 is a moiety of the formula V.
  • An embodiment of the invention is a compound of the formula I, wherein W and Q are both C.
  • Another embodiment of the invention is a compound of the formula I, wherein W is C and Q is N.
  • Another embodiment of the invention is a compound of the formula I, wherein W is N and Q is C.
  • Another embodiment of the invention is a compound of the formula I, wherein W and Q are both N.
  • An embodiment of the invention is a compound of formula I, wherein R6 and R7 are independently selected from the group consisting of hydrogen and Ci- 6 alkyl, preferably selected from the group consisting of hydrogen and Ci- 4 alkyl, preferably selected from the group consisting of hydrogen and methyl, preferably wherein R6 and R7 are both hydrogen.
  • An embodiment of the invention is a compound of formula I, wherein R8 and R9 are independently hydroxyl groups or R8 and R9 form, together with the intervening B and O atoms, a pinacol or catechol group, preferably wherein R8 and R9 are independently hydroxyl groups or R8 and R9 form, together with the intervening B and O atoms, a pinacol group, preferably wherein R8 and R9 are both hydroxyl groups.
  • An embodiment of the invention is a compound of formula I, wherein each of X, Y and Z are selected from the group consisting of halogen, cyano, hydroxyl, CF 3 , and Ci- 6 alkyl ; and each of a, b and c are 0, 1 or 2.
  • An embodiment of the invention is a compound of formula I, wherein each of X, Y and Z are selected from the group consisting of halogen, cyano, hydroxyl, and Ci- 6 alkyl ; and each of a, b and c are 0 or 1.
  • An embodiment of the invention is a compound of formula I, wherein each of X, Y and Z are selected from the group consisting of halogen and Ci- 4 alkyl; and each of a, b and c are 0 or 1.
  • An embodiment of the invention is a compound of formula I, wherein each of X, Y and Z are selected from the group consisting of fluoro and methyl; and each of a, b and c are 0 or 1.
  • An embodiment of the invention is a compound of the formula I, wherein R2 is selected from the group consisting of
  • Rl is hydrogen
  • R3 is selected from the group consisting of hydrogen and Ci_ 5 alkyl, preferably selected from the group consisting of hydrogen and Ci- 4 alkyl, preferably wherein said R3 is methyl;
  • R4 and R5 are selected from the group consisting of OH and 0-Ci- 5 alkyl, preferably selected from the group consisting of OH and 0-Ci- 4 alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy.
  • An embodiment of the invention is a compound of the formula I, wherein R3 is selected from the group consisting of
  • Rl and R2 are hydrogen
  • R4 and R5 are selected from the group consisting of OH and 0-Ci_ 5 alkyl, preferably selected from the group consisting of OH and 0-Ci- 4 alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy.
  • An embodiment of the invention is a compound of the formula I, wherein R4 and/or R5 is a moiety of the formula
  • Rl and R2 are hydrogen
  • R3 is selected from the group consisting of hydrogen and Ci- 6 alkyl, preferably selected from the group consisting of hydrogen and Ci- 4 alkyl, preferably wherein said R3 is methyl .
  • An embodiment of the invention is a compound of the formula I, wherein Y' is S.
  • An embodiment of the invention is a compound of the formula I, wherein X' is O.
  • An embodiment of the invention is a compound of the formula I, wherein R' and R" are both hydrogen .
  • Compounds of formula I may comprise asymmetrically substituted (chiral) carbon atoms and carbon-carbon double bonds which may give rise to the existence of stereoisomeric forms, e.g . enantiomers, diastereomers and geometric isomers.
  • the present invention includes all such isomers, either in pure form or as mixtures thereof.
  • the compounds of formula I may be obtained in crystalline form either directly by concentration from an organic solvent or by crystallisation or recrystallisation from an organic solvent or mixture of said solvent and a cosolvent that may be organic or inorganic, such as water.
  • the crystals may be isolated in essentially solvent-free form or as a solvate, such as a hydrate.
  • the invention covers all crystalline modifications and forms and also mixtures thereof.
  • the present invention further relates to a pharmaceutical composition
  • a pharmaceutical composition comprising as an active ingredient an effective amount of at least one compound of the Formula I, or pharmaceutically acceptable salt thereof and/or stereoisomer thereof, optionally in combination with one or more conventional excipients.
  • the pharmaceutical composition of the present invention usually comprises 0.1-90wt% of the compound of Formula I and/or physiologically acceptable salt thereof.
  • the pharmaceutical composition can be prepared according to methods known in the art. For this purpose, if necessary, the compound of Formula I and/or a stereoisomer thereof is combined with one or more solid or liquid pharmaceutically acceptable excipients and/or adjuvants, to form an application form or dosage form suitable for administration to a human.
  • the compound of Formula I of the present invention or the pharmaceutical composition containing the same can be administered in unit dosage form, and the administration routes can be intestinal or parenteral administration, such as oral, intramuscular, subcutaneous, nasal, oral mucosal, skin, intraperitoneal or rectal administration.
  • the administration dosage form can be, for example, tablets, capsules, drop pills, aerosols, pills, powders, solutions, suspensions, emulsions, granules, liposomes, transdermal agents, buccal tablets, suppositories, lyophilized powder injections, can be normal preparations, sustained-release preparations, controlled-release preparations, and various microparticle administration systems.
  • various carriers well known in the art can be widely used.
  • the examples of the carriers can be, for example, diluents and absorbents, such as starch, dextrin, calcium sulfate, lactose, mannitol, sucrose, sodium chloride, glucose, urea, calcium carbonate, kaolin, microcrystalline cellulose, aluminum silicate; wetting agent and binding agent, such as water, glycerol, polyethylene glycol, ethanol, propanol, starch slurry, dextrin, syrup, honey, glucose solution, acacia mucilage, gelatin mucilage, sodium carboxymethylcellulose, shellac, methylcellulose, potassium phosphate, polyvinylpyrrolidone; disintegrants, such as, dry starch powder, alginate, agar powder, laminarin powder, sodium hydrogen carbonate and citric acid, calcium carbonate, polyoxyethylene sorbitol fatty acid ester, sodium dodecyl sulfate, methyl cellulose, ethyl cellulose; disintegr
  • the tablets can be further processed into coated tablets, for example, sugar coated tablets, thin film coated tablets, enteric-coated tablets, or double-layer tablets or multi-layer tablets.
  • various carriers known in the art can be used.
  • the examples of the carriers can be, for example, diluents and absorbing agents, such as glucose, lactose, starch, cocoa butter, hydrogenated vegetable oil, polyvinylpyrrolidone, Gelucire, kaolin, talc; binding agent, such as acacia gum, tragacanth gum, gelatin, ethanol, honey, liquid sugar, rice paste or panada; disintegrants, such as agar powder, dry starch powder, alginate, sodium dodecyl sulfonate, methyl cellulose, ethyl cellulose.
  • various carriers known in the art can be widely used.
  • the examples of the carriers can be, for example, polyethylene glycol, lecithin, cocoa butter, fatty alcohol, ester of fatty alcohol, gelatin, semi-synthetic ester.
  • the compound of Formula I or stereoisomer thereof as effective component is mixed with the various carriers, and the resultant mixture is placed in hard gelatin capsule shells or soft capsules.
  • the compound of Formula I or stereoisomer thereof as effective component can also be processed into microcapsules, suspended in aqueous medium to form a suspension, or placed in hard capsules or processed into injections.
  • a preparation for injection such as solution, emulsion, lyophilized powder injection and suspension
  • all diluents known in the art for example, water, ethanol, polyethylene glycol, 1,3-propylene glycol, ethoxylated isostearyl alcohol, multi-oxidized isostearyl alcohol, polyoxyethylene sorbitol fatty acid ester, could be used.
  • an isotonic injection solution an suitable amount of sodium chloride, glucose or glycerol can be added to the injection preparation, and conventional co-solvent, buffer agent, and pH regulator can further added.
  • flavouring agents preservatives, flavoring agents, correctants, sweetening agents or other materials can also be added to the pharmaceutical compositions.
  • the administration dose of the compound of Formula I, or a stereoisomer thereof may depend on many factors, for example, the properties and severity of the diseases to be prevented or treated, the gender, age, bodyweight and individual reaction of patient or animal, the specific compound to be used, the administration routes and times, and so on.
  • the dose can be of single dose form or can be divided into several dose forms, such as, two, three or four dose forms.
  • the compounds according to the invention may be used as a prodrug for the treatment of inflammatory diseases or cancer.
  • inflammatory diseases include rheumatoid arthritis (RA), juvenile dermatomyositis, juvenile rheumatoid arthritis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, atopic dermatitis, eczema, Crohn's disease, uveitis associated with juvenile idiopathic arthritis or ulcerative colitis, colitis ulcerosa, multiple sclerosis, Amyotropic Lateral Sclerosis (ALS), non-infectious ocular inflammation, vasculitis, systemic lupus erythematosus, and eosinophilic fasciitis.
  • RA rheumatoid arthritis
  • psoriasis juvenile rheumatoid arthritis
  • psoriatic arthritis psoriatic arthritis
  • lupus sarcoidosis
  • Non-limiting examples of cancer diseases include acute lymphocytic leukemia, meningeal leukemia, myeloproliferative neoplasm, breast cancer, squamous cell carcinoma, lymphosarcoma, osteosarcoma, advanced mycosis fungoides (cutaneous T cell lymphoma), small cell types lung cancer, non-small cell lung cancer, and non-Hodgkin's lymphoma.
  • Analytical TLC was conducted on Merck aluminium sheets covered with silica (C60) .
  • the plates were either visualized under UV-light or stained by dipping in a developing agent followed by heating .
  • KMn0 4 (3 g in water (300 mL) along with K 2 C0 3 (20 g) and 5% aqueous NaOH (5 mL)) or Ninhydrin (3 g in a mixture of n-butanol (200 mL) and AcOH (6 mL)) were used as developing agents.
  • Flash column chromatography was performed using Matrex 60 A, 35-70 ⁇ silicagel.
  • Method A eluents A (0.1% HC0 2 H in mili-Q water) and B (0.1% HC0 2 H in CH 3 CN) were used in a linear gradient (5% B to 100% B) in a total run time of 2.6 min.
  • Method B eluents A (0.1% HC0 2 H in H 2 0) and B (0.1% HC0 2 H in CH 3 CN) were used in a linear gradient (5% B to 100% B) in a total run time of 5.0 min.
  • Method C eluents A (lOmM NH 4 OAc in mili-Q water) and B (0.1% NH 4 OAc in mili-Q water /MeCN, 90/10, v/v) were used in a linear gradient (5% B to 100% B) in a total run time of 2.6 min.
  • Method D eluents A (0.1% NH 4 OAc in H 2 0) and B (0.1% NH 4 OAc in CH 3 CN) were used in a linear gradient (5% B to 100% B) in a total run time of 5.0 min
  • the LC system was coupled to a SQD mass spectrometer operating in both positive and negative electrospray modes. The temperature for all recordings was approximately 20 °C.
  • Analytical LC- HRMS (ESI) analysis was performed on an Agilent 1100 RP-LC system equipped with a diode array detector using a Phenomenex Luna C18 column (d 3 ⁇ , 2.1 x 50 mm ; column temp: 40 °C; flow: 0.4 mL/min) .
  • Eluents A (0.1% HC0 2 H in H 2 0) and B (0.1% HC0 2 H in CH 3 CN) were used in a linear gradient (20% B to 100% B) in a total run time of 15 min.
  • the LC system was coupled to a Micromass LCT orthogonal time-of-flight mass spectrometer equipped with a Lock Mass probe operating in positive or negative electrospray mode.
  • Elution was carried out in a reversed-phase gradient fashion combining Al (0.1% HC0 2 H in mili-Q water) and Bl (0.1% HC0 2 H in CH 3 CN) or A2 (5 m M N H 4 OAc in H 2 0) and B2 (5 m M N H 4 OAc in CH 3 CN) : 5% B to 70 % B in 10 min, hold for 3.5 min, then 70% B to 100% B in 1.5 min, and hold 3 minutes. Total run time : 20 min .
  • 2,4-diamino-6-(hydroxymethyl)pteridine hydrochloride (4.40 g, 19.2 mmol) was dissolved in hot water (150 mL) and after cooling to 21 °C the solution was neutralized with 1M NaOH aq. solution to pH 7 (ca. 20 mL) . The formed precipitates were collected by filtration, washed with water, and dried in vacuo over P 2 0 5 to afford an orange-beige solid corresponding to 2,4-diamino-6- (hydroxymethyl)pteridine. The solid was suspended in dry DMAc (25 mL) and triphenylphosphine dibromide ( 18.1 g, 42.9 mmol) was added to the suspension.
  • the reaction was allowed to warm to 21 °C and stirred for 5 h under a N 2 atmosphere.
  • the mixture was diluted with CH 2 CI 2 (100 mL), washed with 1M HCI (2 x75 mL), sat. NaHC0 3 (2 x 75mL), and brine (75 mL) .
  • the organic phase was dried over Na 2 S0 4 , filtered, and concentrated in vacuo to afford a yellow solid (770 mg) that was purified by preparative HPLC.
  • the CH 3 CN/H 2 0 fractions containing the pinacolate intermediate were poured together into a 250mL round bottom flask and HCI cc. (0.3 mL, ca. pH 2) was added .
  • reaction mixture was stirred for 16 h at 21 °C and quenched with sat. NaHC0 3 (ca. 50 mL) . After removal of the CH 3 CN in vacuo the formed precipitate was filtered, washed with H 2 0 and dried in vacuo to afford the title compound 9 (122 mg, 27%) as a yellow solid.
  • the solid residue was purified by preparative HPLC.
  • the CH 3 CN/H 2 0 fractions containing the pinacolate intermediate were poured together into a 250mL round bottom flask and HCI cc. (0.3 mL, ca. pH 2) was added.
  • the reaction mixture was stirred for 16h at room temperature and quenched with sat. NaHC0 3 (ca. 50 mL) .
  • After removal of the CH 3 CN in vacuo the formed precipitate was filtered, washed with H 2 0 and dried in vacuo to afford the title compound 10 (179 mg, 22%) as a yellow solid.
  • the reaction was allowed to warm to 21 °C and stirred for 5 h under a N 2 atmosphere.
  • the mixture was diluted with CH 2 CI 2 (100 mL), washed with 1M HCI (2 x75 mL), sat. NaHC0 3 (2 x 75mL) and brine (75 mL) .
  • the organic phase was dried over Na 2 S0 4 , filtered and concentrated in vacuo.
  • the solid residue was purified by preparative HPLC.
  • the CH 3 CN/H 2 0 fractions containing the pinacolate intermediate were poured together into a 250mL round bottom flask and HCI cc. (0.3 mL, ca. pH 2) was added .
  • methotrexate (12) 1.0 g, 2.20 mmol
  • anhydrous DMF 50 mL
  • 1, 1,3,3-tetramethylguanidine 0.55 mL, 4.4 mmol
  • 4-methoxybenzyl chloride 0.59 mL, 4.4 mmol
  • reaction mixture was stirred for 16h at 21 °C and quenched with sat. NaHC0 3 (ca. 50 mL) . After removal of CH 3 CN in vacuo, the precipitate was filtered, washed with H 2 0 and dried in vacuo to afford 30 as a yellow solid (131 mg, 39%) .
  • the reaction was allowed to warm to 21 °C and stirred for 5 h under a N 2 atmosphere.
  • the crude mixture was concentrated in vacuo to afford a dark yellow solid .
  • the solid residue was purified by preparative HPLC.
  • the CH 3 CN/H 2 0 fractions containing the pinacolate intermediate were poured together into a 250mL round bottom flask and HCI cc. (0.3 mL, ca. pH 2) was added .
  • the reaction mixture was stirred for 16h at room temperature and quenched with excess of sat. NaHC0 3 (ca. 50 mL) .
  • the reaction was allowed to warm to 21 °C and stirred for 16 h under a N 2 atmosphere.
  • the mixture was diluted with CH 2 CI 2 (100 mL), washed with 1 M aq. HCI (2 x75 ml_), sat. aq. NaHC0 3 (2 x 75mL), and brine (75 mL).
  • the organic phase was dried over Na 2 S0 4 , filtered, and concentrated in vacuo to afford a solid that was purified by preparative HPLC.
  • the CH 3 CN/H 2 0 fractions containing the pinacolate intermediate were poured together and HCI cc. was added until pH ⁇ 2.
  • the reaction mixture was stirred for 16 h at 21 °C and quenched with sat.
  • Chemical Stability pH 7.4 / PBS stability Chemical stability at pH 7.4 for compounds 16 and 23 was assessed using diclofenac as an internal standard.
  • To 490 ⁇ _ of a pre-warmed solution of 20 ⁇ diclofenac in PBS (0.1% DMSO) is added 10 ⁇ ⁇ . of a ImM DMSO solution of compound 16 and 23 (in triplicates) .
  • the mixture was incubated at 1000 rpm at 37 °C in an Eppendorf Thermomixer C ( 1.5 mL) and samples were taken for analysis by RP-UPLC-MS after 30 min, lh, 2h, 4h, 8h, 24h and 48h.
  • Solubility Kinetic solubility at 100 ⁇ with 1% DMSO. Briefly, the kinetic solubility, utilizing test compound from 10 mM DMSO stock solution, is measured at a final compound concentration of 100 ⁇ and 1% DMSO. Test compound is added to 100 mM potassium phosphate buffer, pH 7.4, and incubated at 37 °C for 20 hours in a heater-shaker. After incubation, the samples are centrifuged at 3000xg at 37 °C for 30 min to pellet insoluble material and an aliquot of the supernatant is taken for analysis. After dilution of the sample, the concentration of dissolved compound is quantified by LC-MS/MS analysis. Plasma protein binding assay.
  • the fraction unbound drug (f u ) in plasma from human or other animal species was determined by equilibrium dialysis at 37 °C for 4 hours using a Rapid Equilibrium Dialysis (RED) device.
  • the drug molecule at a concentration of 10 ⁇ is added to 50% plasma and dialyzed against isotonic phosphate buffer (67 mM, pH 7.4). After dialysis, the drug concentration in the buffer and plasma is quantified by LC-MS/MS analysis.
  • the stability of the drug molecule in plasma is determined by incubating drug- spiked plasma (10 ⁇ ) at 37 °C for 4 hours, meanwhile the control plasma sample is kept in the freezer. The concentration of drug in both samples is quantified by LC-MS/MS analysis.
  • the in vitro metabolic stability assay uses liver microsomes. Compound is dissolved in 100 mM KP0 4 buffer pH 7.4 to a ⁇ final concentration. The assay is initiated by addition of NADPH and incubated for up to 40 min (THERMOstar, BMG Lab Technologies) with microsomes. Experiments are terminated at different time points by addition of acetonitrile. The amount of parent compound remaining is analyzed by LC-MS/MS. The natural logarithm of relative amount parent compound remaining is plotted against time and the first-order rate constant of consumption is determined by linear regression. In vitro half life is expressed in minutes and in vitro clearance in ⁇ /img x min), respectively.
  • the human breast cancer MCF-7 (Sigma) and human large cell lung cancer NCIH-460 (ATTC) cell lines were cultured in a humidified, 5% C0 2 atmosphere at 37 °C in Dulbecco ' s Modified Eagle ' s Medium (DMEM) (Sigma) or Roswell Park Memorial Institute medium (RPMI) 1640 (Sigma) supplemented with 10% fetal bovine serum (FBS, heat- inactivated, Fisher Scientific) and 1% penicillin/streptomycin. Both cell lines were subcultured every 2-3 days.
  • DMEM Dulbecco ' s Modified Eagle ' s Medium
  • RPMI 1640 Roswell Park Memorial Institute medium
  • FBS fetal bovine serum
  • Fisher Scientific heat- inactivated, Fisher Scientific
  • MTS 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2- (4-sulfophenyl)-2H-te-trazolium (MTS) assay (Promega Biotech AB, Sweden ) was used to determine the in vitro antiproliferative effect of the compounds. This assay is based on the principle that cells have the ability to reduce MTS tetrazolium, while, when dead, they lose this ability. MCF-7 and NCI-H460 cells were cultured in 96-well plates at an initial density of 10 4 cells/well (MCF-7) or 7xl0 3 cells/well (NCI-H460) in their respective growth medium.
  • the medium was removed and the cells were incubated in the presence or absence of pre-activated compounds at different concentrations.
  • the MTS reagent was added to each well .
  • the cells were further incubated for a period of time between 30-60 min at 37 °C until colorimetric reaction was developed within the linear range and the absorbance of the samples was measured at 490 nm using a 96-well plate spectrophotometer (Victor 3 plate reader with Wallac 1420 Workstation vs 3.0 software).
  • a control was used for each tested compound, where cells were incubated with DMEM or RPMI containing the equivalent concentration of DMSO (maximum of 0.4% v/v). Each concentration of tested compounds was done in triplicates. The final concentration of H202 in each well was always ⁇ 10 ⁇ (non-cytotoxic concentration in MCF-7 and NCI-H460 cell lines, determined with the described assay). The IC 50 values were calculated using GraphPad Prism v6.0 (California, USA) as the concentration of the compounds required to cause 50% response compared to cells exposed to controls using a non-linear dose-response regression.
  • FIGURE 2 shows MCF-7 in vitro cell viability assay incubated with compounds 12 (methotrexate) and prodrug 16.
  • Cells were incubated at increasing concentrations of tested compouns for 48 h before MTS reagent was added .
  • Pre-activation of tested compounds with H 2 0 2 was performed 24 h before experiment started as described in the experimental section.
  • FIGURE 4 shows NCI-H460 in vitro cell viability assay incubated with compounds 12 (methotrexate) and prodrug 16. Cells were incubated at increasing concentrations of tested compouns for 48 h before MTS reagent was added .
  • Pre-activation of tested compounds with H 2 0 2 was performed 24 h before experiment started as described in the experimental section.
  • FIGURE 6 shows activation of prodrugs under oxidative conditions (H 2 0 2 ) . The activation was run at a test compound concentration of 50 ⁇ and H 2 0 2 of 0.5 mM in a mixture of 30% DMSO in PBS. The experiment was run in triplicates. Values are represented as mean and error bars as SD. Error bars not shown are smaller than the symbol .
  • FIGURE 7 shows NCI-H460 in vitro cell viability assay incubated with compounds 31 (aminopterin) and prodrug 23.
  • Cells were incubated at increasing concentrations of tested compounds for 48 h before MTS reagent was added .
  • Pre-activation of tested compounds with H 2 0 2 was performed 24 h before experiment started as described in the experimental section.
  • FIGURE 8 shows MCF-7 in vitro cell viability assay incubated with compounds 31 (aminopterin) and prodrug 23.
  • mice Male, 8-9 weeks were obtained from Janvier, France. The mice were maintained in the animal house at Redoxis, Medicon Village, Lund, Sweden, where they were acclimatized for approximately one week before initiation of the experiment. All animal experiments were approved by the local animal ethic committee Malmo/Lund, Sweden, approved under the license N165-15.
  • CIA collagen induced arthritis
  • CFA Complete Freund's Adjuvant
  • Vehicle and compound 2% DMSO in PBS, Life Technologies, injection volume 370 ⁇
  • mice with score exceeding 45 were removed from the experiment.
  • the general health of mice was evaluated three times per week after disease induction. As an indicator of general health, animal body weight was used.
  • DBA/IJ mice were given the indicated amounts of compound daily and disease progression vas evaluated three times per week starting on day 27.
  • One animal in vehicle group and one animal in 23 group were sacrificed pre-termination due to high score.
  • the AMT group was removed pre- termination due to a decline in health.
  • Data represents mean values of arthritic score ⁇ SEM.
  • * represents a p-value ⁇ 0.05 and ** represents a p-value ⁇ 0.01 for comparison between MTX and vehicle, while ⁇ represents a p-value ⁇ 0.05 for comparison between 16 and vehicle.
  • Rl and R2 are selected from the group consisting of hydrogen and a moiety of the formula II, III or IV
  • R3 is selected from the group consisting of hydrogen, Ci_ 5 alkyl, C 2 - 6 alkenyl, C 2 - 4 alkynyl, C 5 . i 2 aryl, C 4- n heteroaryl and a moiety of the formula II, III or IV above,
  • R4 and R5 are independently selected from the group consisting of OH, 0-Ci- 6 alkyl, 0-C 2 . 5 alkenyl, 0-C 6 -i 2 aryl, 0-C 4 -uheteroaryl and a moiety of the formula V or VI;
  • R6 and R7 are independently selected from the group consisting of hydrogen, CF 3 , Ci- 6 alkyl, C 2 - 6 alkenyl, C 6 -i 2 aryl, and C 4 -uheteroaryl;
  • R8 and R9 are independently hydroxyl groups or R8 and R9 form, together with the intervening B and O atoms, a pinacol, catechol, diethanolamine, N-methyldiethanolamine or MIDA boronate group;
  • W and Q are independently C or N; wherein each of X, Y and Z are selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF 3 , Ci- 6 alkyl, Ci- 6 alkoxy, C 2 - 6 alkenyl, C 2 - 6 alkenyloxy, C 6 -i 2 aryl, C 4 .
  • Ci- 6 alkyl, C 2 - 6 alkenyl, C 6 -i 2 aryl, C 4 -uheteroaryl may be substituted by one or more substituents selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF 3 , and Ci_ 5 alkyl; and each of a, b and c are integers in the range 0-4;
  • X' and Y' are independently S or O, and R' and R" are independently selected from hydrogen, Ci- 6 alkyl, C 2 - 6 alkenyl, aryl and Ci- 6 alkyl-aryl; wherein, if each of Rl, R2 and R3 are different from a moiety selected from a moiety of the formula II, III and IV, then at least one of R4 and R5 is a moiety of the formula V; as well as pharmaceutically acceptable salts, solvates, and stereoisomers thereof.
  • ASPECT 4 The compound according to any one of the preceding aspects, wherein R8 and R9 are independently hydroxyl or R8 and R9 form, together with the intervening B and O atoms, a pinacol or catechol group, preferably wherein R8 and R9 are independently hydroxyl or R8 and R9 form, together with the intervening B and O atoms, a pinacol group, preferably wherein R8 and R9 are both hydroxyl groups.
  • each of X, Y and Z are selected from the group consisting of halogen, cyano, hydroxyl, CF 3 , and Ci- 5 alkyl ; and each of a, b and c are 0, 1 or 2.
  • R2 is selected from the group consisting of
  • Rl is hydrogen
  • R3 is selected from the group consisting of hydrogen and Ci- 6 alkyl, preferably selected from the group consisting of hydrogen and Ci- 4 alkyl, preferably wherein said R3 is methyl; and R4 and R5 are selected from the group consisting of OH and 0-Ci- 5 alkyl, preferably selected from the group consisting of OH and 0-Ci_ 4 alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy.
  • Rl and R2 are hydrogen
  • R4 and R5 are selected from the group consisting of OH and 0-Ci- 5 alkyl, preferably selected from the group consisting of OH and 0-Ci- 4 alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy.
  • Rl and R2 are hydrogen
  • R3 is selected from the group consisting of hydrogen and Ci- 6 alkyl, preferably selected from the group consisting of hydrogen and Ci- 4 alkyl, preferably wherein said R3 is methyl.
  • a method for the preparation of a compound of the formula I comprising the steps: a) Providing methotrexate (MTX) of the formula 12 or aminopterin of the formula 31 or any protected versions of them
  • R4, R5, R6, R7, R8, R9, R', R", W, Q, X, X', Y, Y' Z, a, b, c are as defined above,
  • RIO and Rl l is a leaving group LG; and c) Reacting optionally protected MTX(12) or optionally protected aminopterin (31) with a compound of formula Ila, Ilia, IVa, or VI to obtain a compound of formula I according to the invention;
  • a pharmaceutical composition comprising a compound according to any one of aspects 1-12 optionally in combination with one or more excipients.
  • a compound according to any one of aspects 1-12 as a prodrug for the treatment of inflammatory diseases or cancer such as wherein said inflammatory disease is selected from the group consisting of rheumatoid arthritis (RA), juvenile dermatomyositis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, atopic dermatitis, eczema Crohn's disease, colitis ulcerosa, multiple sclerosis, and Amyotropic Lateral Sclerosis (ALS).
  • RA rheumatoid arthritis
  • juvenile dermatomyositis juvenile dermatomyositis
  • psoriasis psoriatic arthritis
  • lupus lupus
  • sarcoidosis atopic dermatitis
  • eczema Crohn's disease colitis ulcerosa
  • multiple sclerosis multiple sclerosis
  • ALS Amyotropic Lateral Sclerosis

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Abstract

Prodrugs activated predominantly or exclusively in inflammatory tissue, more particularly prodrugs of methotrexate and derivatives thereof, which are selectively activated by Reactive Oxygen Species (ROS) in inflammatory tissues associated with cancer and inflammatory diseases, as well as method for preparing said prodrugs.

Description

PRODRUGS ACTIVATED BY REACTIVE OXYGEN SPECIES FOR USE IN THE TREATMENT OF INFLAMMATORY DISEASES AND CANCER
FIELD OF THE INVENTION
The present invention relates to prodrugs which are activated predominantly or exclusively in inflammatory tissue. More particularly, the present invention relates to prodrugs of methotrexate and derivatives thereof, which are selectively activated by Reactive Oxygen Species (ROS) in inflammatory tissues associated with cancer and inflammatory diseases such as rheumatoid arthritis (RA), juvenile dermatomyositis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, Crohn's disease, colitis ulcerosa, multiple sclerosis, Amyotropic Lateral Sclerosis (ALS), atopic dermatitis, eczema etc.
BACKGROUND OF THE INVENTION
The current therapies for the treatment of cancer and the palliation of symptoms in chronic inflammatory diseases such as rheumatoid arthritis (RA), employing chemotherapy and antiinflammatory therapeutics, are well-known to produce severe side-effects due their side-effect profile and poor selectivity.
Prodrugs are masked forms of pharmacologically active agents designed to undergo in vivo activation by specific stimuli. By introduction of prodrug chemical moieties that makes the drug in question inactive in healthy tissue and selectively activated in diseased tissue the side-effect profile and the selectivity may be improved significantly. It is well-known that the concentration of Reactive Oxygen Species (ROS) is increased in inflammatory tissues associated with cancer and rheumatoid arthritis compared to healthy tissue. This unique environment of the inflammatory tissue can therefore be used as a trigger stimulus and in turn enables more selective palliative treatment of diseases associated with chronic inflammation, as well as in cancer therapy, by reducing side-effects stemming from cross-reactivity with healthy tissue.
Methotrexate is a well-known anti-cancer drug, a so-called anti-folate acting by inhibiting the metabolism of folic acid via dihydrofolate reductase. Methotrexate is also widely used as a disease- modifying treatment for some autoimmune diseases, including rheumatoid arthritis, juvenile dermatomyositis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, and Crohn's disease. US 2015/0005352 Al discloses ROS-sensitive prodrug compositions and methods of treating ROS- associated diseases by administering the ROS-sensitive prodrug compositions.
WO 2012/123076 Al relates to ferrocene-based compounds and their use as ROS-regulating prodrugs. Xiaohua Peng & Varsha Gandhi, "ROS-activated anticancer prodrugs: a new strategy for tumor- specific damage", Therapeutic Delivery 2012, 3, 823-833 discloses the use of boronic acids/esters as triggers for developing ROS-activated anticancer prodrugs that target cancer cells.
US 2013/0045949 Al related to prodrugs that are selectively activated to produce active anticancer agents in tumor cells using phenylboronates and phenylboronic acids as the trigger moiety. Yunyan Kuang, Kumudha Balakrishnan, Varsha Gandhi, and Xiaohua Peng, "Hydrogen peroxide inducible DNA cross-linking agents: targeted anticancer prodrugs", J. Am. Chem. Soc. 2011, 133, 19278-19281 discloses a series of 3 phenyl boronic acid- and boronate-based compounds used as hydrogen peroxide sensitive prodrugs for the treatment of cancer.
WEI WEN-HAO ET AL. : "Gadolinium texaphyrin-methotrexate conjugates. Towards improved cancer chemotherapeutic agents", ORGANIC & BIOMOLECULAR CHEMISTRY, ROYAL SOCIETY OF CHEMISTRY, GB, vol. 3, no. 18, 21 September 2005, p. 3290-3296 discloses methotrexate conjugates and their use.
ACHILLI, C. ET AL. : "Folic acid-conjugated 4-Amino-Phenylboronate, a Boron-Containing Compound Designed for Boron Neutron Capture Therapy, is an Unexpected Agonist for Human Neutrophils and Platelets", CHEM BIO DRUG DES, vol. 83, 2013, p. 532-540 discloses folic acid-conjugated 4-amino- phenylboronate as a possible compound for the selective delivery of 10B in Boron Neutron Capture Therapy (BNCT).
ROSOWSKY A ET AL. : "SYNTHESIS OF BIOLOGICAL ACTIVITY OF METHOTREXATE ANALOGUES WITH TWO ACID GROUPS AND A HYDROPHOBIC AROMATIC RING IN THE SIDE CHAIN", JOURNAL OF MEDICINAL CHEMISTRY AMERICAN CHEMICAL SOCIETY, US, vol. 34, no. 2, 1 January 1991, p. 574-579 discloses Y-(m-carboxyanilide) and Y-(m-boronoanilide) deivatives of methotrexate and γ- (m-carboxyanilide) derivatives of aminopterin.
KHAN; Z.A. ET AL. : "Methotrexate: a detailed review on drug delivery and clinical spects", EXPERT OPINION ON DRUG DELIVERY, vol. 9, 2012, p. 151-169 describes methotrexate and uses thereof for the treatment of various types of malignancy, psoriasis, rheumatological diseases and the medical termination of pregnancy.
US 2013/045949 Al discloses compounds that may be selectively activated to produce active anci- cancer agents in tumor cells. US 2014/0378673 Al relates to hypoxia selective prodrugs.
There is still a need for novel prodrugs of ROS-sensitive drug compositions, in particular prodrugs of methotrexate, which may be used for site-specific treatment, are stable and lend themselves for up-scaling.
OBJECT OF THE INVENTION It is an object of embodiments of the invention to provide prodrugs of ROS-sensitive drug compositions, in particular prodrugs of methotrexate, which are selectively activated in inflammatory tissues, have a beneficial cytotoxicity in target cells, low (no) cytotoxicity in healthy cells, are stable, and have a satisfactory bioavailability at the intended site of action.
SUMMARY OF THE INVENTION It has been found by the present inventor(s) that the below disclosed derivatives of methotrexate of formula I are ROS-sensitive and are selectively activated in inflammatory tissues and thus lend themselves for site-specific treatment with methotrexate.
So, in a first aspect the present invention relates to a compound of the formula I
Figure imgf000004_0001
wherein Rl and R2 are independently selected from the group consisting of hydrogen and a moiety of the formula II, III, IV, VII, VIII, IX, X, XI, or XII
Figure imgf000005_0001
R3 is selected from the group consisting of hydrogen, Ci-6alkyl, C2-6alkenyl, C2-4alkynyl, C5-i2aryl, C4. 11 heteroaryl and a moiety of the formula II, III, IV, VII, VIII, IX, X, XI, or XII above;
R4 and R5 are independently selected from the group consisting of OH, 0-Ci-6alkyl, 0-C2-6alkenyl, 0-C5-i2aryl, 0-C4-uheteroaryl and a moiety of the formula V, VI, XIII, XIV, XV, XVI, or XVII;
Figure imgf000006_0001
R6, R7 and R12 are independently selected from the group consisting of hydrogen, CF3,
Figure imgf000006_0002
C2-6alkenyl, C5-i2aryl, and C4-uheteroaryl ;
R8 and R9 are independently hydroxyl groups or R8 and R9 form, together with the intervening B and O atoms, a pinacol, catechol, diethanolamine, N-methyldiethanolamine or N- methyliminodiacetic acid (MIDA) boronate group;
W and Q are independently C or N; wherein each of X, Y and Z are selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF3, Ci-6alkyl, Ci-6alkoxy, C2-6alkenyl, C2-6alkenyloxy, C6-i2aryl, C4-uheteroaryl ; wherein each of said Ci-6alkyl, C2-6alkenyl, C6-i2aryl, C4-uheteroaryl may be substituted by one or more substituents selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF3, and Ci-6alkyl; and each of a, b and c are integers in the range 0-4;
X' and Y' are independently S or O, and R', R", R'" and R"" are independently selected from hydrogen, Ci-5alkyl, C2-6alkenyl, C5-i2aryl, C4-uheteroaryl, and Ci-5alkyl-C5-i2aryl ; wherein, if each of Rl, R2 and R3 are different from a moiety selected from a moiety of the formula II, III, IV, VII, VIII, IX, X, XI, or XII then at least one of R4 and R5 is a moiety of the formula V, XIII, XIV, XV, XVI, or XVII; as well as pharmaceutically acceptable salts, solvates, and stereoisomers thereof.
In a second aspect the present invention relates to a method for the preparation of a compound according to the invention, comprising the steps: a) Providing methotrexate (MTX) of the formula 12 or aminopterin (AMT) of the formula 31
Figure imgf000007_0001
b) Providing a compound of formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa
Figure imgf000008_0001
wherein R4, R5, R6, R7, R8, R9, R12, R', R", R'", R"", W, Q, X, X', Y, Y' Z, a, b, c are as defined above,
RIO and Rl l is a leaving group LG; and c) Reacting optionally protected MTX (12) or optionally protected aminopterin (31) with a compound of formula Ila, Ilia, IVa, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa to obtain a compound of formula I according to the invention;
d) Optionally performing a deprotection step;
e) Optionally reacting the compound obtained in step c) or d), as appropriate, with a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa, followed by an optional deprotection step to obtain a compound of formula I according to the invention.
Alternatively, providing an optionally protected fragment of MTX (12) or aminopterin (31) containing the moieties of the formula II, III, IV, V, VI, VII, VIII, IX, X, XI, XII, XIII, XIV, XV, XVI, and/or XVII and reacting it with 6-(bromomethyl)pteridine-2,4-diamine hydrobromide (33«HBr), including a final deprotection step when needed, to obtain a compound of the formula I.
Alternatively, optionally reacting methotrexate (12), aminopterin (31), a protected version of them, or the compound obtained in step c) or d) with a peptide coupling agent e.g . BOP, PyBOP, DCC, EDC, HATU, HOBt, etc. followed by addition of a compound of the formula XVIIIa, XlXa, or XXa, and a final deprotection step when needed, to obtain a compound of the formula I. Suitable coupling agents are known to a person skilled in the art and are disclosed in e.g . Chem. Rev. , 2011, 111 (11), 6557-6602.
In a third aspect the present invention relates to a pharmaceutical composition comprising a compound according to the invention, optionally in combination with one or more excipients.
In a fourth aspect the present invention relates to a compound according to the invention as a prodrug for the treatment of inflammatory diseases or cancer.
BRIEF DESCRIPTION OF THE DRAWINGS
FIGURE 1 shows RP-UPLC-MS UV (λ = 306 nm) chromatograms of the activation of prodrug 16;
FIGURE 2 shows MCF-7 in vitro cell viability assay incubated with compounds 12 (methotrexate) and prodrug 16; FIGURE 3 shows in vitro cell viability study of MCF-7 cells incubated for 48 h with 0.25, 0.062 and 0.015 μΜ concentrations of compounds 12 (methotrexate) and 16;
FIGURE 4 shows NCI-H460 in vitro cell viability assay incubated with compounds 12 (methotrexate) and prodrug 16; FIGURE 5 shows in vitro cell viability study of NCI-H460 cells incubated for 48 h with 0.25, 0.062 and 0.015 μΜ concentrations of compounds 12 (methotrexate) and 16 (mean ± SD, n = 3) ;
FIGURE 6 shows activation of prodrugs under oxidative conditions (H202);
FIGURE 7 shows NCI-H460 in vitro cell viability assay incubated with compounds 31 (aminopterin) and prodrug 23; FIGURE 8 shows MCF-7 in vitro cell viability assay incubated with compounds 31 (aminopterin) and prodrug 23;
FIGURE 9 shows suppression of CIA development in mice after treatment with methotrexate (MTX, 12), aminopterin (AMT, 31) and prodrugs 16 and 23 (n = 8 per group) ; and
FIGURE 10 shows the general health of mice was evaluated three times per week during CIA as the average body weight in groups of animals (n = 8) tested with vehicle, MTX, AMT, 16, and 23.
DETAILED DISCLOSURE
Definitions
In the present context the term "alkyl" means a linear, cyclic or branched hydrocarbon group having 1 to 24 carbon atoms, such as methyl, ethyl, propyl, /so-propyl, cyclopropyl, butyl, /so-butyl, tert-butyl, cyclobutyl, pentyl, cyclopentyl, hexyl, and cyclohexyl .
In the present context the term "alkenyl" means a linear, cyclic or branched hydrocarbon groups having 2 to 24 carbon atoms, and comprising (at least) one unsaturated bond . Examples of alkenyl groups are vinyl, allyl, butenyl, pentenyl, hexenyl, heptenyl, octenyl, nonenyl and decaenyl . Preferred examples of alkenyl are vinyl, allyl, butenyl, especially allyl . In the present context the term "alkynyl" means a linear, cyclic or branched hydrocarbon groups having 2 to 24 carbon atoms, and comprising (at least) one triple bond. Examples of alkynyl groups are acetylene, propynyl, butynyl, pentynyl, and hexynyl.
The term "halogen" includes fluoro, chloro, bromo, and iodo. In the present context the term "alkoxy" refers to a group -OR, wherein R is alkyl as defined above.
In the present context the term "alkenyloxy" refers to a group -OR, wherein R is alkenyl as defined above.
In the present context the term "aryl" refers to an unsaturated cyclic system. Aryl groups may comprise from 4-12 atoms, suitably from 6-8 atoms, most suitably 6 atoms. "Aryl" is preferably phenyl (-C5H5).
In the present context, the term "aromatic" is intended to mean a carbocyclic ring system, such as phenyl, naphthyl, 1,2,3,4-tetrahydronaphthyl, anthracyl, phenanthracyl, pyrenyl, benzopyrenyl, fluorenyl and xanthenyl.
In the present context the term "heteroaryl" refers to an unsaturated cyclic system where one or more of the carbon atoms have been replaced with heteroatoms, e.g. nitrogen ( = N- or -NH-), sulphur, and/or oxygen atoms. Heteroaryl groups may comprise from 4-12 atoms, suitably from 5-9 atoms, such as 5-6 atoms, wherein at least one carbon atom has been replaced with a heteroatom, e.g. nitrogen ( = N- or -NH-), sulphur, and/or oxygen atoms.
In the present context the term "heteroaromatic" is intended to mean an aromatic carbocyclic ring system where one or more of the carbon atoms have been replaced with heteroatoms, e.g. nitrogen ( = N- or -NH-), sulphur, and/or oxygen atoms. Examples of such heteroaryl groups are oxazolyl, isoxazolyl, thiazolyl, isothiazolyl, pyrrolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, pyrazinyl, pyridazinyl, triazinyl, coumaryl, furanyl, thienyl, quinolyl, benzothiazolyl, benzotriazolyl, benzodiazolyl, benzooxozolyl, phthalazinyl, phthalanyl, triazolyl, tetrazolyl, isoquinolyl, acridinyl, carbazolyl, dibenzazepinyl, indolyl, benzopyrazolyl, phenoxazonyl. Particularly interesting heteroaryl groups are benzimidazolyl, oxazolyl, isoxazolyl, thiazolyl, isothiazolyl, pyrrolyl, imidazolyl, pyrazolyl, pyridinyl, pyrimidinyl, pyrazinyl, pyridazinyl, furyl, thienyl, quinolyl, triazolyl, tetrazolyl, isoquinolyl, indolyl in particular benzimidazolyl, pyrrolyl, imidazolyl, pyridinyl, pyrimidinyl, furyl, thienyl, quinolyl, tetrazolyl, and isoquinolyl. The term "pharmaceutically acceptable salt" is intended to indicate salts prepared by reacting a compound of formula I with a suitable inorganic or organic acid, such as hydrochloric, hydrobromic, hydroiodic, sulfuric, nitric, phosphoric, formic, acetic, 2,2-dichloroacetic, choline, adipic, ascorbic, L- aspartic, L-glutamic, galactaric, lactic, maleic, L-malic, phthalic, citric, propionic, benzoic, glutaric, gluconic, D-glucuronic, methanesulfonic, salicylic, succinic, malonic, tartaric, benzenesulfonic, ethane-l,2-disulfonic, 2-hydroxy ethanesulfonic acid, toluenesulfonic, sulfamic or fumaric acid . Pharmaceutically acceptable salts of compounds of formula I may also be prepared by reaction with a suitable base such as sodium hydroxide, potassium hydroxide, magnesium hydroxide, calcium hydroxide, ammonia, or suitable non-toxic amines, such as lower alkylamines, for example triethylamine, hydroxy-lower alkylamines, for example 2-hydroxyethylamine, bis-(2-hydroxyethyl)- amine, cycloalkylamines, for example dicyclohexylamine, or benzylamines, for example Ν,Ν ' - dibenzylethylenediamine, and dibenzylamine, or L-arginine or L-lysine.
The term "solvate" is intended to indicate a species formed by interaction between a compound, e.g . a compound of formula I, and a solvent, e.g. alcohol, glycerol or water, wherein said species is in a solid form . When water is the solvent, said species is referred to as a hydrate.
Specific embodiments of the invention
The compounds of the formula I according to the invention may be prepared by the following steps: a) Providing methotrexate (MTX) of the formula 12 or aminopterin (AMT) of the formula 31 or any protected version of them. ;
Figure imgf000012_0001
Providing a compound of formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa
Figure imgf000013_0001
Wherein R4, R5, R6, R7, R8, R9, R12, R', R", R'", R"", W, Q, X, X', Y, Y' Z, a, b, c are as defined above,
RIO and Rll is a leaving group LG; and c) Reacting optionally protected MTX ( 12) or optionally protected aminopterin (31) with a compound of formula Ila, Ilia, IVa, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa to obtain a compound of formula I according to the invention ;
d) Optionally performing a deprotection step;
e) Optionally reacting the compound obtained in step c) or d), as appropriate, with a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa, followed by an optional deprotection step to obtain a compound of formula I according to the invention .
Alternatively, providing an optionally protected fragment of MTX ( 12) or aminopterin (31) containing the moieties of the formula II, III, IV, V, VI, VII, VIII, IX, X, XI, XII, XIII, XIV, XV, XVI, and/or XVII and reacting it with 6-(bromomethyl)pteridine-2,4-diamine hydrobromide (33« H Br), including a final deprotection step when needed, to obtain a compound of the formula I.
Step a
Methotrexate (MTX) of the formula 12 or aminopterin of the formula 31 are prepared with protecting groups at the desired positions when necessary. Suitable protective groups are known to a person skilled in the art and are disclosed in e.g . Wuts, P. G . M . & Greene, T. W. Greene's Protective Groups in Organic Synthesis. (Wiley, 2006) .
A non-limiting example of the process step a can be found in Preparation Example 8, 9 and 21 below. Step b
A compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa may be provided commercially or may be prepared by a method known per se from commercially available starting compounds. Non-limiting examples of possible leaving groups include CI, Br, I, CDI, p-nitrophenol, etc.. Thus e.g . a compound of the formula Ila, Ilia or IVa may be prepared from the corresponding alcohol, transforming it into reactive species such a chloroformate or halide. Non-limiting examples are shown in Preparation Examples 1, 2 and 3, wherein the synthesis of compounds 1 , 3 and 5 is illustrated . Thus e.g. a compound of the formula XXIa may be prepared from the corresponding amine, transforming it into the reactive isocyanate. Non-limiting examples are shown in Preparation Example 22, wherein the synthesis of compound 34 is illustrated .
Step c Optionally protected methotrexate (MTX) of the formula 12 or aminopterin of the formula 31 is reacted with one or more compounds of the formula Ila, Ilia, IVa, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, XXIIIa in a manner known per se. Illustrative, non-limiting examples of said reaction can be found in Examples 1, 2, 3, 4, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 below. Step d
Optionally deprotection of a protected version of methotrexate or aminopterion functionalized with the groups of formula II, III, IV, V, VII, VIII, IX, X, XI, XII, XIII, XIV, XV, XVI and/or XVII, is performed . Illustrative, non-limiting examples of said reaction can be found in Example 6 and 8.
Step e The compound obtained in step c) or d), as appropriate, may optionally be reacted with a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa, followed by an optional deprotection step, to obtain a compound of formula I according to the invention. Illustrative, non-limiting examples of said reaction can be found in Examples 19, 20, 21, 22, 23, 24 below. Alternatively, providing an optionally protected fragment of MTX ( 12) or aminopterin (31) containing the moieties of the formula II, III, IV, V, VI, VII, VIII, IX, X, XI, XII, XIII, XIV, XV, XVI, and/or XVII as illustrated in Preparation Example 14, and reacting it with 6- (bromomethyl)pteridine-2,4-diamine hydrobromide (33«HBr) to obtain a compound of the formula I, as illustrated in Example 7, including a final deprotection step when needed, as illustrated in Example 6 and 8.
Alternatively, optionally reacting methotrexate (12), aminopterin (31), a protected version of them, or the compound obtained in step c) or d) with a peptide coupling agent e.g . BOP, PyBOP, DCC, EDC, HATU, HOBt, etc. followed by addition of a compound of the formula XVIIIa, XlXa, or XXa, and a final deprotection step when needed, to obtain a compound of the formula I. Suitable coupling agents are known to a person skilled in the art and are disclosed in e.g . Chem. Rev. , 2011, 111 (11), 6557-6602.
An embodiment of the invention is a compound of the formula I, wherein Rl and R2 are independently selected from the group consisting of hydrogen and a moiety of the formula II, III, or IV.
An embodiment of the invention is a compound of the formula I, wherein R3 is selected from the group consisting of hydrogen, Ci_5alkyl, C2-5alkenyl, C2.4alkynyl, C5_i2aryl, C4.nheteroaryl and a moiety of the formula II, III, or IV.
An embodiment of the invention is a compound of the formula I, wherein R4 and R5 are independently selected from the group consisting of OH, 0-Ci-6alkyl, 0-C2-6alkenyl, 0-C6-i2aryl, O- C4-uheteroaryl and a moiety of the formula V, or VI
An embodiment of the invention is a compound of the formula I, wherein Rl and R2 are independently selected from the group consisting of hydrogen and a moiety of the formula II, III, or IV;
R3 is selected from the group consisting of hydrogen, Ci-6alkyl, C2-6alkenyl, C2.4alkynyl, C6-i2aryl, C4. 11 heteroaryl and a moiety of the formula II, III, or IV;
R4 and R5 are independently selected from the group consisting of OH, 0-Ci-6alkyl, 0-C2-6alkenyl, 0-C6-i2aryl, 0-C4-uheteroaryl and a moiety of the formula V, or VI; and wherein, if each of Rl, R2 and R3 are different from a moiety selected from a moiety of the formula II, III, and IV, then at least one of R4 and R5 is a moiety of the formula V.
An embodiment of the invention is a compound of the formula I, wherein W and Q are both C.
Another embodiment of the invention is a compound of the formula I, wherein W is C and Q is N.
Another embodiment of the invention is a compound of the formula I, wherein W is N and Q is C.
Another embodiment of the invention is a compound of the formula I, wherein W and Q are both N. An embodiment of the invention is a compound of formula I, wherein R6 and R7 are independently selected from the group consisting of hydrogen and Ci-6alkyl, preferably selected from the group consisting of hydrogen and Ci-4alkyl, preferably selected from the group consisting of hydrogen and methyl, preferably wherein R6 and R7 are both hydrogen.
An embodiment of the invention is a compound of formula I, wherein R8 and R9 are independently hydroxyl groups or R8 and R9 form, together with the intervening B and O atoms, a pinacol or catechol group, preferably wherein R8 and R9 are independently hydroxyl groups or R8 and R9 form, together with the intervening B and O atoms, a pinacol group, preferably wherein R8 and R9 are both hydroxyl groups.
An embodiment of the invention is a compound of formula I, wherein each of X, Y and Z are selected from the group consisting of halogen, cyano, hydroxyl, CF3, and Ci-6alkyl ; and each of a, b and c are 0, 1 or 2.
An embodiment of the invention is a compound of formula I, wherein each of X, Y and Z are selected from the group consisting of halogen, cyano, hydroxyl, and Ci-6alkyl ; and each of a, b and c are 0 or 1.
An embodiment of the invention is a compound of formula I, wherein each of X, Y and Z are selected from the group consisting of halogen and Ci-4alkyl; and each of a, b and c are 0 or 1.
An embodiment of the invention is a compound of formula I, wherein each of X, Y and Z are selected from the group consisting of fluoro and methyl; and each of a, b and c are 0 or 1.
An embodiment of the invention is a compound of the formula I, wherein R2 is selected from the group consisting of
Figure imgf000017_0001
in which X, Y, Z, a, b and c, are as defined above;
Rl is hydrogen; R3 is selected from the group consisting of hydrogen and Ci_5alkyl, preferably selected from the group consisting of hydrogen and Ci-4alkyl, preferably wherein said R3 is methyl; and
R4 and R5 are selected from the group consisting of OH and 0-Ci-5alkyl, preferably selected from the group consisting of OH and 0-Ci-4alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy.
An embodiment of the invention is a compound of the formula I, wherein R3 is selected from the group consisting of
Figure imgf000018_0001
in which X, Y, Z, a, b, and c are as defined above;
Rl and R2 are hydrogen; and
R4 and R5 are selected from the group consisting of OH and 0-Ci_5alkyl, preferably selected from the group consisting of OH and 0-Ci-4alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy.
An embodiment of the invention is a compound of the formula I, wherein R4 and/or R5 is a moiety of the formula
Figure imgf000018_0002
in which Z and c are as defined above;
Rl and R2 are hydrogen; and
R3 is selected from the group consisting of hydrogen and Ci-6alkyl, preferably selected from the group consisting of hydrogen and Ci-4alkyl, preferably wherein said R3 is methyl . An embodiment of the invention is a compound of the formula I, wherein Y' is S.
An embodiment of the invention is a compound of the formula I, wherein X' is O. An embodiment of the invention is a compound of the formula I, wherein R' and R" are both hydrogen .
An embodiment of the invention is a compound of the formula I selected from the group consisting of
(S)-(4-((((2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl) phenyl)boronic acid (compound 9)
(S)-(4-((((2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)-2- methylphenyl)boronic acid (compound 10)
(S)-(4-((((2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)-2- fluorophenyl)boronic acid (compound 11)
Bis(4-methoxybenzyl) (4-(((2-amino-4-((((4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)benzyl)oxy)carbonyl)amino)pteridin-6-yl)methyl)(methyl)amino)benzoyl)-i-glutamate
(compound 14) (S)-(4-((((2-Amino-6-(((4-((l,5-bis((4-methoxybenzyl)oxy)-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)phenyl)boronic acid (compound 15)
(4-(((2-Amino-4-((((4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl)(methyl)amino)benzoyl)-i-glutamic acid (compound 16)
('S>)-(4-((((2,4-Diaminopteridin-6-yl)methyl)(4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)amino)methyl)phenyl)boronic acid (compound 22) (4-((4-Boronobenzyl)((2,4-diaminopteridin-6-yl)methyl)amino)benzoyl)-i-glutamic acid (compound 23) (S)-(4-((((2-Amino-6-(((4-((l,5-di-tert-butoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)phenyl)b acid (compound 30)
(4-((((2-Amino-6-(((4-((l,5-bis(allyloxy)-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)phenyl)boronic acid (compound 33)
(S)-(4-((3-(2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)ureido)methyl)phenyl)boronic acid (compound 35) (S)-5-((4-Boronobenzyl)oxy)-4-(4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzamido)- 5-oxopentanoic acid (compound 37)
(S)-5-((4-Boronobenzyl)oxy)-2-(4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzamido)- 5-oxopentanoic acid (compound 38)
(S)-(4-(((5-((4-Boronobenzyl)oxy)-2-(4-(((2,4-diaminopteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxopentanoyl)oxy)methyl)phenyl)boronic acid (compound 39)
(S)-(4-(((2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)amino)methyl)phenyl)boronic acid (40)
(S)-(4-(((4-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2-yl)carbamoyl)- phenyl)(methyl)amino)methyl)pteridin-2-yl)amino)methyl)phenyl)boronic acid (compound 41)
(5)-((((6-(((4-((l,5-Dimethoxy-l,5-dioxopentan-2-yl)carbamoyl)phenyl)- (methyl)amino)methyl)pteridine-2,4-diyl)bis(azanediyl))bis(methylene))bis(4,l- phenylene))diboronic acid (compound 42)
(5)-((((((6-(((4-((l,5-Dimethoxy-l,5-dioxopentan-2-yl)carbamoyl)phenyl)- (methyl)amino)methyl)pteridine-2,4-diyl)bis(azanediyl))bis(carbonyl))bis(oxy))- bis(methylene))bis(4,l-phenylene))diboronic acid (compound 43) (2-(4-(((2-Amino-4-((((4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxo-5-(2-oxothiazolidin-3-yl)pentanoic acid (compound 44)
4-(4-(((2-Amino-4-((((4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxo-5-(2-oxothiazolidin-3-yl)pentanoic acid (compound 45)
(4-((((2-Amino-6-(((4-((l,5-dioxo-l,5-bis(2-oxothiazolidin-3-yl)pentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)-methyl)phenyl)boronic acid (compound 46) 2-(4-((4-Boronobenzyl)((2,4-diaminopteridin-6-yl)methyl)amino)benzamido)-5-oxo-5-(2- oxothiazolidin-3-yl)pentanoic acid (compound 47)
4-(4-((4-Boronobenzyl)((2,4-diaminopteridin-6-yl)methyl)amino)benzamido)-5-oxo-5-(2- oxothiazolidin-3-yl)pentanoic acid (compound 48)
(4-((((2,4-Diaminopteridin-6-yl)methyl)(4-((l,5-dioxo-l,5-bis(2-oxothiazolidin-3-yl)pentan-2- yl)carbamoyl)phenyl)amino)methyl)phenyl)boronic acid (compound 49) .
Pharmaceutically acceptable salts, solvates, and stereoisomers of the compound of formula I are also provided.
Compounds of formula I may comprise asymmetrically substituted (chiral) carbon atoms and carbon-carbon double bonds which may give rise to the existence of stereoisomeric forms, e.g . enantiomers, diastereomers and geometric isomers. The present invention includes all such isomers, either in pure form or as mixtures thereof.
The compounds of formula I may be obtained in crystalline form either directly by concentration from an organic solvent or by crystallisation or recrystallisation from an organic solvent or mixture of said solvent and a cosolvent that may be organic or inorganic, such as water. The crystals may be isolated in essentially solvent-free form or as a solvate, such as a hydrate. The invention covers all crystalline modifications and forms and also mixtures thereof.
The present invention further relates to a pharmaceutical composition comprising as an active ingredient an effective amount of at least one compound of the Formula I, or pharmaceutically acceptable salt thereof and/or stereoisomer thereof, optionally in combination with one or more conventional excipients. The pharmaceutical composition of the present invention usually comprises 0.1-90wt% of the compound of Formula I and/or physiologically acceptable salt thereof. The pharmaceutical composition can be prepared according to methods known in the art. For this purpose, if necessary, the compound of Formula I and/or a stereoisomer thereof is combined with one or more solid or liquid pharmaceutically acceptable excipients and/or adjuvants, to form an application form or dosage form suitable for administration to a human.
The compound of Formula I of the present invention or the pharmaceutical composition containing the same can be administered in unit dosage form, and the administration routes can be intestinal or parenteral administration, such as oral, intramuscular, subcutaneous, nasal, oral mucosal, skin, intraperitoneal or rectal administration. The administration dosage form can be, for example, tablets, capsules, drop pills, aerosols, pills, powders, solutions, suspensions, emulsions, granules, liposomes, transdermal agents, buccal tablets, suppositories, lyophilized powder injections, can be normal preparations, sustained-release preparations, controlled-release preparations, and various microparticle administration systems. In order to process the unit dosage form into tablets, various carriers well known in the art can be widely used. The examples of the carriers can be, for example, diluents and absorbents, such as starch, dextrin, calcium sulfate, lactose, mannitol, sucrose, sodium chloride, glucose, urea, calcium carbonate, kaolin, microcrystalline cellulose, aluminum silicate; wetting agent and binding agent, such as water, glycerol, polyethylene glycol, ethanol, propanol, starch slurry, dextrin, syrup, honey, glucose solution, acacia mucilage, gelatin mucilage, sodium carboxymethylcellulose, shellac, methylcellulose, potassium phosphate, polyvinylpyrrolidone; disintegrants, such as, dry starch powder, alginate, agar powder, laminarin powder, sodium hydrogen carbonate and citric acid, calcium carbonate, polyoxyethylene sorbitol fatty acid ester, sodium dodecyl sulfate, methyl cellulose, ethyl cellulose; disintegration inhibitors, such as sucrose, tristearin, cocoa butter, hydrogenated oil; absorption enhancers, such as, quaternary ammonium salts, sodium dodecyl sulfate; lubricants, such as, talc, silica, maize powder, stearate, boric acid, liquid paraffin, polyethylene glycol. The tablets can be further processed into coated tablets, for example, sugar coated tablets, thin film coated tablets, enteric-coated tablets, or double-layer tablets or multi-layer tablets. In order to process the administration unit into pills, various carriers known in the art can be used. The examples of the carriers can be, for example, diluents and absorbing agents, such as glucose, lactose, starch, cocoa butter, hydrogenated vegetable oil, polyvinylpyrrolidone, Gelucire, kaolin, talc; binding agent, such as acacia gum, tragacanth gum, gelatin, ethanol, honey, liquid sugar, rice paste or panada; disintegrants, such as agar powder, dry starch powder, alginate, sodium dodecyl sulfonate, methyl cellulose, ethyl cellulose. In order to process the administration unit into suppositories, various carriers known in the art can be widely used. The examples of the carriers can be, for example, polyethylene glycol, lecithin, cocoa butter, fatty alcohol, ester of fatty alcohol, gelatin, semi-synthetic ester. In order to process the administration unit into capsules, the compound of Formula I or stereoisomer thereof as effective component is mixed with the various carriers, and the resultant mixture is placed in hard gelatin capsule shells or soft capsules. The compound of Formula I or stereoisomer thereof as effective component can also be processed into microcapsules, suspended in aqueous medium to form a suspension, or placed in hard capsules or processed into injections. In order to process the administration unit into a preparation for injection, such as solution, emulsion, lyophilized powder injection and suspension, all diluents known in the art, for example, water, ethanol, polyethylene glycol, 1,3-propylene glycol, ethoxylated isostearyl alcohol, multi-oxidized isostearyl alcohol, polyoxyethylene sorbitol fatty acid ester, could be used. In addition, in order to prepare an isotonic injection solution, an suitable amount of sodium chloride, glucose or glycerol can be added to the injection preparation, and conventional co-solvent, buffer agent, and pH regulator can further added.
In addition, if necessary, colouring agents, preservatives, flavoring agents, correctants, sweetening agents or other materials can also be added to the pharmaceutical compositions.
The administration dose of the compound of Formula I, or a stereoisomer thereof may depend on many factors, for example, the properties and severity of the diseases to be prevented or treated, the gender, age, bodyweight and individual reaction of patient or animal, the specific compound to be used, the administration routes and times, and so on. The dose can be of single dose form or can be divided into several dose forms, such as, two, three or four dose forms.
The compounds according to the invention may be used as a prodrug for the treatment of inflammatory diseases or cancer. Non-limiting examples of inflammatory diseases include rheumatoid arthritis (RA), juvenile dermatomyositis, juvenile rheumatoid arthritis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, atopic dermatitis, eczema, Crohn's disease, uveitis associated with juvenile idiopathic arthritis or ulcerative colitis, colitis ulcerosa, multiple sclerosis, Amyotropic Lateral Sclerosis (ALS), non-infectious ocular inflammation, vasculitis, systemic lupus erythematosus, and eosinophilic fasciitis. Non-limiting examples of cancer diseases include acute lymphocytic leukemia, meningeal leukemia, myeloproliferative neoplasm, breast cancer, squamous cell carcinoma, lymphosarcoma, osteosarcoma, advanced mycosis fungoides (cutaneous T cell lymphoma), small cell types lung cancer, non-small cell lung cancer, and non-Hodgkin's lymphoma.
General Methods Unless otherwise stated, commercially available reagents were used without further purification and all solvents were of HPLC quality. Reactions under nitrogen atmosphere were performed in oven- or flame-dried glassware and dry solvents. Anhydrous CH2CI2, CH3CN, THF, DMF, and toluene were obtained from Innovative Technology PS-MD-7 Pure-solve solvent purification system. Dry solvents were typically prepared by drying over molecular sieves (3 A or 4 A). All reactions were monitored by thin-layer chromatography (TLC) and reversed-phased ultra-performance liquid chromatography mass spectrometry (RP-UPLC-MS) .
Analytical TLC was conducted on Merck aluminium sheets covered with silica (C60) . The plates were either visualized under UV-light or stained by dipping in a developing agent followed by heating . KMn04 (3 g in water (300 mL) along with K2C03 (20 g) and 5% aqueous NaOH (5 mL)) or Ninhydrin (3 g in a mixture of n-butanol (200 mL) and AcOH (6 mL)) were used as developing agents. Flash column chromatography was performed using Matrex 60 A, 35-70 μ silicagel.
All new compounds were characterized by 1 NMR, 13C NMR and HRMS (ESI) . For recording of 1 NMR and 13C NMR a Bruker Ascend with a Prodigy cryoprobe (operating at 400 MHz for proton and 100 MHz for carbon) was used. The chemical shifts (δ) are reported in parts per million (ppm) and the coupling constants (J) in Hz. For spectra recorded in CDCI3, signal positions were measured relative to the signal for CHCI3 (7.26 ppm for XH NMR and 77.16 ppm for 13C NMR) . For spectra recorded in DMSO-d6 signal positions were measured relative to the signal for DMSO (δ 2.50 ppm for XH NMR and 39.52 ppm for 13C NMR) . For spectra recorded in C6D5, signal positions were measured relative to the signal for C5H5 (7.16 ppm for 1H NMR and 128.06 ppm for 13C NMR) For spectra recorded in D20 signal positions were measured relative to the signal for H20 (δ 4.79 ppm for XH NMR) . Analytical RP-UPLC-MS (ESI) analysis was performed on a Waters AQUITY RP-UPLC system equipped with a diode array detector using a Thermo accucore C18 column (d 2.6 μιη, 2.1 x 50 mm; column temp: 50 °C; flow: 0.6 mL/min) .
Four different methods were use. Method A: eluents A (0.1% HC02H in mili-Q water) and B (0.1% HC02H in CH3CN) were used in a linear gradient (5% B to 100% B) in a total run time of 2.6 min. Method B: eluents A (0.1% HC02H in H20) and B (0.1% HC02H in CH3CN) were used in a linear gradient (5% B to 100% B) in a total run time of 5.0 min. Method C: eluents A (lOmM NH4OAc in mili-Q water) and B (0.1% NH4OAc in mili-Q water /MeCN, 90/10, v/v) were used in a linear gradient (5% B to 100% B) in a total run time of 2.6 min. Method D : eluents A (0.1% NH4OAc in H20) and B (0.1% NH4OAc in CH3CN) were used in a linear gradient (5% B to 100% B) in a total run time of 5.0 min
. The LC system was coupled to a SQD mass spectrometer operating in both positive and negative electrospray modes. The temperature for all recordings was approximately 20 °C. Analytical LC- HRMS (ESI) analysis was performed on an Agilent 1100 RP-LC system equipped with a diode array detector using a Phenomenex Luna C18 column (d 3 μιη, 2.1 x 50 mm ; column temp: 40 °C; flow: 0.4 mL/min) . Eluents A (0.1% HC02H in H20) and B (0.1% HC02H in CH3CN) were used in a linear gradient (20% B to 100% B) in a total run time of 15 min. The LC system was coupled to a Micromass LCT orthogonal time-of-flight mass spectrometer equipped with a Lock Mass probe operating in positive or negative electrospray mode.
Purification of reactions by preparative RP-H PLC was performed on a Waters Alliance reverse-phase H PLC system consisting of a Waters 2545 Binary Gradient Module equipped with either an xBridge BEH C18 OBD Prep Column ( 130 A, 5 μ ιη, 30 x 150 mm) or an xBridge Peptide BEH C18 OBD Prep Column ( 130 A, 5 μΐη, 19 mm x 100 mm) both operating at 20 °C and a flow rate of 20 mL/min, a Waters Photodiode Array Detector (detecting at 210-600 nm), a Waters UV Fraction Manager, and a Waters 2767 Sample Manager. Elution was carried out in a reversed-phase gradient fashion combining Al (0.1% HC02H in mili-Q water) and Bl (0.1% HC02H in CH3CN) or A2 (5 m M N H4OAc in H20) and B2 (5 m M N H4OAc in CH3CN) : 5% B to 70 % B in 10 min, hold for 3.5 min, then 70% B to 100% B in 1.5 min, and hold 3 minutes. Total run time : 20 min .
PREPARATION EXAM PLE 1
4-(4,4,5,5-Tetramethyl-l,3,2-dioxaborolan-2-yl)benzyl carbonochloridate (1)
Figure imgf000025_0001
A solution of (4-(4,4, 5,5-tetramethyl- l,3,2-dioxaborolan-2-yl)phenyl)methanol (2.0 g, 8.54 mmol) in anhydrous dioxane (25 m L) was treated with phosgene (20% in toluene, 22.6 mL, 42.7 mmol) and the reaction was stirred under a N2 atmosphere at 21 °C for 20 h . The mixture was concentrated in vacuo, redissolved, and co-evaporated with toluene (2x) to afford the crude product 1 (2.5 g, quantitative yield) as a clear oil . The crude chloroformate was used in subsequent reactions within few hours after its isolation . 1H NMR (400 MHz, CDCI3) δ 7.84 (d, J = 8.1 Hz, 2H), 7.38 (d, J = 8.1 Hz, 2H), 5.31 (s, 2H), 1.35 (s, 12H) ; 13C N MR ( 101 MHz, CDCI3) δ 150.8, 136.2, 135.4, 128.0, 84.2, 73.4, 25.0. PREPARATION EXAMPLE 2
( 3-Methyl-4-( 4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl)methanol (2)
Figure imgf000026_0001
A suspension of (4-(hydroxymethyl)-2-methylphenyl)boronic acid (0.9 g, 5.42 mmol) and pinacol (0.7 g, 5.96 mmol) in anhydrous THF (25 mL) was refluxed for 16 h under a N2 atmosphere. The solids dissolved during the reaction. The mixture was concentrated in vacuo and the residue was purified by flash column chromatography on silica gel using a mixture of CH2CI2/EtOAc (9: 1, v/v) as the eluent to give the title compound 2 as a clear oil (1.27 g, 95%) . Rf = 0.84 (silica, eluent CH2CI2/EtOAc, 1/1, v/v) . XH NMR (400 MHz, CDCI3) δ 7.76 (d, J = 7.4 Hz, 1H), 7.17 - 7.09 (m, 2H), 4.67 (s, 2H), 2.54 (s, 3H), 1.34 (s, 12H) ; 13C NMR (101 MHz, CDCI3) δ 145.5, 143.6, 136.4, 128.3, 123.2, 83.6, 65.4, 25.0, 22.3; HRMS (ESI) m/z: calcd for Ci4H22B03 [M + Na]+ 271.1476, found 271.1512.
PREPARATION EXAMPLE 3
3-Methyl-4-( 4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzyl carbonochloridate (3)
Figure imgf000026_0002
A solution of (3-methyl-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl)methanol (2) (1.2 g, 4.84 mmol) in anhydrous dioxane (25 mL) was treated with phosgene (20% in toluene, 12.8 ml_, 24.2 mmol) and the reaction was stirred at 21 °C under a N2 atmosphere for 6 h. The mixture was then concentrated in vacuo, redissolved and co-evaporated with toluene (2x) to afford the crude product 3 as a clear oil (1.5 g, quantitative yield) . The crude chloroformate was used in subsequent reactions within few hours after its isolation. 1 NMR (400 MHz, CDCI3) δ 7.78 (d, J = 8.0 Hz, 1H), 7.20 - 7.13 (m, 2H), 5.26 (s, 2H), 2.55 (s, 3H), 1.34 (s, 12H) . 13C NMR (101 MHz, CDCI3) δ 150.8, 145.7, 136.5, 135.7, 130.1, 125.0, 83.8, 73.5, 25.0, 22.3.
PREPARATION EXAMPLE 4
( 3-Fluoro-4-( 4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl)methanol (4)
Figure imgf000027_0001
A suspension of (2-fluoro-4-(hydroxymethyl)phenyl)boronic acid (0.90 g, 5.30 mmol) and pinacol (0.69 g, 5.83 mmol) in anhydrous THF (25mL) was refluxed for 16 h under a N2 atmosphere. The solids dissolved during this time and then the solvent was removed in vacuo. The residue was purified by flash column chromatography on silica gel using a mixture of CH2CI2/EtOAc (9/1, v/v) as the eluent to give the title compound 4 as a clear oil (1.26 g, 94%). The oil became a white solid upon storage in the fridge. Rf = 0.71 (silica, eluent CH2CI2/EtOAc, 1/1, v/v) . XH NMR (400 MHz, CDCI3) δ 7.77 - 7.67 (m, 1H), 7.12 (d, J = 7.6 Hz, 1H), 7.06 (d, J = 10.1 Hz, 1H), 4.72 (s, 2H), 1.36 (s, 12H) ; 13C NMR (101 MHz, CDCI3) δ 167.6 (d, J = 251.4 Hz), 147.2 (d, J = 8.0 Hz), 137.2 (d, J = 8.4 Hz), 121.7 (d, J = 2.9 Hz), 113.4 (d, J = 24.7 Hz), 84.0, 64.6, 25.0.
PREPARATION EXAMPLE 5
4-(4,4,5,5-Tetramethyl-l,3,2-dioxaborolan-2 yl) benzyl carbonochloridate (5)
Figure imgf000027_0002
To a solution of (3-fluoro-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl)methanol (4) (1.2 g, 4.8 mmol) in anhydrous dioxane (25 mL) was added phosgene (15% in toluene, 17 mL) and the mixture was stirred under a N2 atmosphere for 6 h at 21 °C. The mixture was then concentrated in vacuo and the residue co-evaporated with toluene (2x) to afford the crude product 5 as a white solid (1.5 g, quantitative yield) . The crude chloroformate was used in subsequent reactions within few hours after isolation. XH NMR (400 MHz, CDCI3) δ 7.77 (dd, J = 7.5, 6.1 Hz, 1H), 7.15 (dd, J = 7.5, 1.3 Hz, 1H), 7.07 (dd, J = 9.6, 1.1 Hz, 1H), 5.29 (s, 2H), 1.36 (s, 12H) ; 13C NMR (101 MHz, CDCI3) δ 167.7 (d, J = 251 Hz), 150.8, 138.92 (d, J = 8.3 Hz), 137.6 (d, J = 8.5 Hz), 123.5 (d, J = 3.2 Hz), 115.3 (d, J = 25.4 Hz), 84.3 (s), 72.2 (s), 25.0 (s) . PREPARATION EXAMPLE 6
Dimethyl L-glutamate hydrochloride ( 6-HCI )
Figure imgf000028_0001
Thionyl chloride (5.0 mL, 68 mmol) was added dropwise to 50 mL of anhydrous MeOH at 0 °C. The mixture was stirred for 30 min at the same temperature followed by addition of L-glutamic acid 17 (5.0 g, 34 mmol) . The reaction was stirred under a N2 atmosphere for 3 days at 21 °C and concentrated in vacuo to afford 6-HCI (7.19 g, quant.) as a colorless solid. The crude product was used without further purification. XH NMR (400 MHz, D20) δ 4.24 - 4.19 (m, 1H), 3.85 (s, 3H), 3.73 (s, 3H), 2.65 (td, J = 7.3, 2.2 Hz, 2H), 2.37 - 2.13 (m, 2H) ; 13C NMR (101 MHz, D20) δ 174.8, 170.2, 53.6, 52.4, 52.0, 29.2, 24.7. PREPARATION EXAMPLE 7
4-(((2,4-Diaminopteridin-6-yl)methyl)(methyl)amino)benzoic acid (7)
Figure imgf000028_0002
2,4-diamino-6-(hydroxymethyl)pteridine hydrochloride (4.40 g, 19.2 mmol) was dissolved in hot water (150 mL) and after cooling to 21 °C the solution was neutralized with 1M NaOH aq. solution to pH 7 (ca. 20 mL) . The formed precipitates were collected by filtration, washed with water, and dried in vacuo over P205 to afford an orange-beige solid corresponding to 2,4-diamino-6- (hydroxymethyl)pteridine. The solid was suspended in dry DMAc (25 mL) and triphenylphosphine dibromide ( 18.1 g, 42.9 mmol) was added to the suspension. The turbid and dark mixture was stirred for 24 h at 20 °C under a N2 atmosphere. Then 4-aminobenzoic acid (2.97 g, 19.6 mmol) was added to the reaction and stirred for 3 additional days. The reaction mixture was poured into 250 mL of 0.33M NaOH and the precipitate was filtered off. The filtrate was neutralized with 10% aq . acetic acid (ca. 20 mL and the precipitate form upon neutralization was filtered, washed with water, triturated with MeOH, filtered, and dried in vacuo to afford 7 as an orange-beige solid (5.70 g, 91%) . XH NMR (400 MHz, DMSO-d5) δ 12.15 (br s, 1H), 8.63 (s, 1H), 8.17 (br s, 1H), 7.94 (br s, 1H), 7.73 (d, J = 9.0 Hz, 2H), 7.04 (br s, 2H), 6.83 (d, J = 9.0 Hz, 2H), 4.81 (s, 2H), 3.23 (s, 3H); 13C NMR (101 MHz, DMSO-d5) δ 167.8, 163.2, 161.1, 152.3, 149.5, 147.8, 131.5, 122.2, 118.1, 111.7, 100.0, 55.2, 39.6.
PREPARATION EXAMPLE 8
( 4-( ( ( 2,4-diaminopteridin-6-yl)methyl) ( methyl)amino )benzoyl)-L-glutamate
Figure imgf000029_0001
To a solution of 4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoic acid (7) (3.0 g, 9.2 mmol) in anhydrous DMF (80 mL) was added Et3N (6.4 mL, 46.1 mmol) followed by PyBOP (6.48 g, 12.4 mmol) . The mixture was stirred at 21 °C under a N2 atmosphere for 30 min. Dimethyl L-glutamate hydrochloride (6-HCI) (2.1 g, 9.9 mmol) was added and the reaction mixture was stirred for 5 h. The crude mixture was filtered through a path of celite to remove solids and the filtrate concentrated in vacuo. The solid residue was triturated with a mixture of EtOAc/CHCI3 (150 mL, 1/1) and poured into 750 mL of Et20 at 0 °C under strong stirring . The resultant suspension was filtered, washed with Et20 and cold water, triturated with hot MeOH, and filtered again. The resultant orange solid wash purified by flash column chromatography on silica gel using a mixture of CH2CI2/MeOH (92.5/7.5, v/v) as the eluent to give the title compound 8 (2.39 g, 54%) as a yellow solid . XH NMR (400 MHz, DMSO-d5) δ 8.56 (s, 1H), 8.34 (d, 3 = 7.4 Hz, 1H), 7.72 (d, J = 8.8 Hz, 2H), 7.65 (br s, 1H), 7.43 (br s, 1H), 6.82 (d, J = 8.8 Hz, 2H), 6.61 (br s, 2H), 4.78 (s, 2H), 4.39 (ddd, J = 9.4, 7.4, 5.6 Hz, 1H), 3.61 (s, 3H), 3.57 (s, 3H), 3.21 (s, 3H), 2.41 (t, J = 7.4 Hz, 2H), 2.17 - 2.03 (m, 1 H), 2.01 - 1.72 (m, 1H) ; 13C NMR (101 MHz, DMSO-d5) δ 172.7, 172.6, 166.4, 162.9, 162.7, 155.2, 151.0, 149.2, 145.9, 129.0, 121.4, 120.7, 111.0, 54.9, 51.8, 51.7, 51.4, 38.7, 30.0, 25.8; HRMS (ESI) m/z: calcd for C22H27N805 [M + H]+ 483.2099, found 483.2119.
EXAMPLE 1
(S)-( 4-( ((( 2-Amino-6-( ( ( 4-( ( l,5-dimethoxy-lf5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl) phenyl)boronic acid ( 9)
H
Figure imgf000030_0001
To a suspension of dimethyl (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoyl)-i- glutamate hydrochloride (8) (313 mg, 0.68 mmol) in dry CH2CI2 (25 mL) was added DMAP (417 mg, 3.42 mmol) followed by DIPEA (0.60 mL, 3.42 mmol) . The mixture was cooled to 0 °C and a solution of 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzyl carbonochloridate (1) (1.01 g, 3.42 mmol) in CH2CI2 (10 mL) was added dropwise. The reaction was allowed to warm to 21 °C and stirred for 5 h under a N2 atmosphere. The mixture was diluted with CH2CI2 (100 mL), washed with 1M HCI (2 x75 mL), sat. NaHC03 (2 x 75mL), and brine (75 mL) . The organic phase was dried over Na2S04, filtered, and concentrated in vacuo to afford a yellow solid (770 mg) that was purified by preparative HPLC. The CH3CN/H20 fractions containing the pinacolate intermediate were poured together into a 250mL round bottom flask and HCI cc. (0.3 mL, ca. pH 2) was added . The reaction mixture was stirred for 16 h at 21 °C and quenched with sat. NaHC03 (ca. 50 mL) . After removal of the CH3CN in vacuo the formed precipitate was filtered, washed with H20 and dried in vacuo to afford the title compound 9 (122 mg, 27%) as a yellow solid. XH NMR (400 MHz, DMSO-d5) δ 9.88 (br s, 1H), 8.68 (s, 1H), 8.34 (d, J = 7.5 Hz, 1H), 8.08 (s, 2H), 7.82 (d, J = 7.8 Hz, 2H), 7.72 (d, J = 8.8 Hz, 2H), 7.43 (d, J = 7.8 Hz, 2H), 7.27 (br s, 2H), 6.82 (d, J = 8.9 Hz, 2H), 5.24 (s, 2H), 4.84 (s, 2H), 4.39 (ddd, J = 9.3, 7.7, 5.7 Hz, 1 H), 3.60 (s, 3H), 3.56 (s, 3H), 3.20 (s, 3H), 2.40 (t, J = 7.4 Hz, 2H), 2.15 - 1.90 (m, 2H) ; 13C NMR (101 MHz, DMSO-dg) δ 172.7, 172.6, 166.4, 162.0, 157.8, 155.1, 151.1, 150.7, 150.3, 148.0, 137.7, 134.2, 129.0, 127.0, 120.9, 120.9, 111.1, 66.7, 54.9, 51.8, 51.7, 51.4, 38.9, 30.0, 25.8. HRMS (ESI) m/z: calcd for C30H34BN8O9 [M + H]+ 661.2536, found 661.2566.
EXAMPLE 2
(S)-(4-( ( ((2-Amino-6-( ((4-( ( l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)-2- methylphenyl)boronic acid (10)
H
Figure imgf000031_0001
To a suspension of dimethyl (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoyl)-i- glutamate hydrochloride (8) (427 mg, 0.93 mmol) in dry CH2CI2 (25 mL) was added DMAP (569 mg, 4.66 mmol) followed by DIPEA (0.81 mL, 4.66 mmol) . The mixture was cooled to 0 °C and a solution of 3-methyl-4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzyl carbonochloridate (3) (1.45 g, 4.66 mmol) in CH2CI2 (10 mL) was added dropwise. The reaction was allowed to warm to 21 °C and stirred for 5 h under a N2 atmosphere. The mixture was diluted with CH2CI2 (100 mL), washed with 1M HCI (2 x75 mL), sat. NaHC03 (2 x 75mL) and brine (75 mL), dried over Na2S04, filtered and dried over in vacuo. The solid residue was purified by preparative HPLC. The CH3CN/H20 fractions containing the pinacolate intermediate were poured together into a 250mL round bottom flask and HCI cc. (0.3 mL, ca. pH 2) was added. The reaction mixture was stirred for 16h at room temperature and quenched with sat. NaHC03 (ca. 50 mL) . After removal of the CH3CN in vacuo the formed precipitate was filtered, washed with H20 and dried in vacuo to afford the title compound 10 (179 mg, 22%) as a yellow solid. XH NMR (400 MHz, DMSO-d5) δ 9.82 (s, 1H), 8.69 (s, 1H), 8.34 (d, J = 7.5 Hz, 1H), 8.02 (s, 2H), 7.72 (d, J = 9.0 Hz, 2H), 7.46 (d, J = 8.0 Hz, 1H), 7.28 (br s, 2H), 7.23 - 7.16 (m, 2H), 6.83 (d, J = 9.0 Hz, 2H), 5.18 (s, 2H), 4.84 (s, 2H), 4.39 (ddd, J = 9.5, 7.5, 5.4 Hz, 1H), 3.61 (s, 3H), 3.56 (s, 3H), 3.20 (s, 3H), 2.44 - 2.37 (m, 5H), 2.13 - 1.88 (m, 2H) . ; 13C NMR (101 MHz, DMSO-d5) δ 172.7, 172.6, 166.4, 162.0, 157.8, 155.1, 151.0, 150.7, 150.2, 147.9, 141.4, 136.2, 133.3, 129.0, 128.9, 124.3, 120.9, 120.8, 111.1, 66.7, 54.9, 51.8, 51.7, 51.3, 38.9, 29.9, 25.8, 22.1 ; HRMS (ESI) m/z: calcd for C3iH36BN809 [M+ H] + 675.2693, found 675.2720
EXAMPLE 3 (S)-( 4-( ((( 2-Amino-6-( ( ( 4-( ( l,5-dimethoxy-lf5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)-2- fluorophenyl)boronic acid (11)
H
Figure imgf000032_0001
To a suspension of dimethyl (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoyl)-i- glutamate hydrochloride (12) (502 mg, 1.02 mmol) in dry CH2CI2 (25 mL) was added DMAP (624 mg, 5.11 mmol) followed by DIPEA (0.89 mL, 5.11 mmol) . The mixture was cooled to 0 °C and a solution of 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2 yl)benzyl carbonochloridate (5) (1.30 g, 4.19 mmol) in CH2CI2 (10 mL) was added dropwise. The reaction was allowed to warm to 21 °C and stirred for 5 h under a N2 atmosphere. The mixture was diluted with CH2CI2 (100 mL), washed with 1M HCI (2 x75 mL), sat. NaHC03 (2 x 75mL) and brine (75 mL) . The organic phase was dried over Na2S04, filtered and concentrated in vacuo. The solid residue was purified by preparative HPLC. The CH3CN/H20 fractions containing the pinacolate intermediate were poured together into a 250mL round bottom flask and HCI cc. (0.3 mL, ca. pH 2) was added . The reaction mixture was stirred for 16 h at room temperature and quenched with sat. NaHC03 (ca. 50 mL) . After removal of the CH3CN in vacuo the formed precipitate was filtered, washed with H20 and dried in vacuo to afford 11 as a yellow solid (237 mg, 34%) .^ NMR (400 MHz, DMSO-d5) δ 9.95 (s, 1H), 8.69 (s, 1H), 8.34 (d, J = 7.4 Hz, 1H), 8.22 (s, 2H), 7.72 (d, J = 8.8 Hz, 2H), 7.59 (t, J = 7.0 Hz, 1H), 7.24 (dd, J = 12.0, 9.0 Hz, 4H), 6.83 (d, J = 8.9 Hz, 2H), 5.25 (s, 2H), 4.85 (s, 2H), 4.39 (ddd, J = 9.4, 7.5, 5.7 Hz, 1H), 3.61 (s, 3H), 3.56 (s, 3H), 3.20 (s, 3H), 2.41 (t, J = 7.4 Hz, 2H), 2.16 - 1.86 (m, 2H) ; 13C NMR (100 MHz, DMSO-d5) δ 173.2, 173.04, 166.9, 165.9 (d, J = 244.5 Hz), 162.5, 158.3, 155.6, 151.5, 151.1, 150.7, 148.4, 140.6 (d, J = 8.3 Hz), 136.0 (d, J = 9.8 Hz), 129.5, 123.4 (d, J = 2.7 Hz), 121.4, 121.3, 114.5 (d, J = 25.5 Hz), 111.6, 66.2, 55.4, 52.3, 52.2, 51.8, 39.1, 30.4, 26.2; HRMS (ESI) m/z: calcd for C3oH33BFN809 [M+ 679.2442, found 679.2455.
Figure imgf000033_0001
Figure imgf000034_0001
2. H+, H20
PREPARATION EXAMPLE 9
Bis( 4- methoxy benzyl) ( 4-( ( ( 2,4-diaminopteridin-6-yl)methyl) ( methyl)amino)benzoyl)-L- glutamate (13)
Figure imgf000035_0001
A solution of methotrexate (12) (1.0 g, 2.20 mmol) in anhydrous DMF (50 mL) was treated with 1, 1,3,3-tetramethylguanidine (0.55 mL, 4.4 mmol) at 0 °C and the mixture was stirred for 30min under a N2 atmosphere. Then 4-methoxybenzyl chloride (0.59 mL, 4.4 mmol) was added dropwise and the mixture was allowed to warm to 21 °C and stirred for 24 h. The volatiles were removed in vacuo and the resulting crude solid was purified by flash column chromatography on silica gel using a mixture of CH2CI2/MeOH (from 97/3 to 94/6, v/v) as the eluent to give the title compound 13 (915 mg, 60%) as a yellow solid . Rf = 2.4 (silica, eluent CH2CI2/MeOH, 95/5, v/v) ; XH NMR (400 MHz, DMSO-dg) δ 8.56 (s, 1H), 8.34 (d, J = 7.5 Hz, 1H), 7.71 (d, J = 8.9 Hz, 2H), 7.65 (br s, 1H), 7.43 (br s, 1H), 7.27 (d, J = 6.9 Hz, 2H), 7.25 (d, J = 6.9 Hz, 2H), 6.90 - 6.86 (m, 4H), 6.82 (d, J = 8.9 Hz, 2H), 6.60 (br s, 2H), 5.10 - 4.99 (m, 2H), 4.97 (s, 2H), 4.78 (s, 2H), 4.42 (ddd, J = 9.6, 7.5, 5.4 Hz, 1H), 3.73 (s, 6H), 3.21 (s, 3H), 2.42 (t, J = 7.6 Hz, 2H), 2.13 - 1.90 (m, 2H); 13C NMR (101 MHz, DMSO-d5) δ 172.1, 172.0, 166.5, 162.9, 162.7, 159.1, 155.2, 151.0, 149.2, 145.9, 129.8, 129.7, 129.0, 128.0, 127.9, 121.4, 120.8, 113.8, 111.0, 65.7, 65.3, 55.1, 54.8, 51.9, 38.8, 30.2, 25.8; HRMS (ESI) m/z: calcd for C35H39N807 [M + H]+ 695.2936, found 695.2954.
EXAMPLE 4
Bis( 4-methoxybenzyl) ( 4-( ( ( 2-amino-4-( ((( 4-( 4r4r5r5-tetramethyl-lr3r2-dioxaborolan-2- yl)benzyl)oxy)carbonyl)amino)pteridin-6-yl)methyl)(methyl)amino)benzoyl)-L- glutamate (14)
Figure imgf000036_0001
To a suspension of bis(4-methoxybenzyl) (4-(((2,4-diaminopteridin-6- yl)methyl)(methyl)amino)benzoyl)-z-glutamate (13) (800 mg, 1.15 mmol) in anhydrous CH2CI2 (25 mL) was added DMAP (703 mg, 5.76 mmol) followed by DIPEA ( 1.0 mL, 5.76 mmol) . The mixture was cooled to 0 °C and a solution of 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzyl carbonochloridate (1) (1.71 g, 5.76 mmol) in CH2CI2 (10 mL) was added dropwise. The reaction was allowed to warm to 21 °C and stirred for 5 h under a N2 atmosphere. Then the mixture was diluted with CH2CI2 (100 mL), washed with 1M HCI (2 x75 mL), sat. NaHC03 (2 x 75mL), and brine (75 mL) . The organic phase was dried over Na2S04, filtered and concentrated in vacuo. Purification of the residue by preparative HPLC afforded the title compound 14 (800 mg, 73%) as a yellow solid . XH NMR (400 MHz, DMSO-d5) 9.87 (s, 1H), 8.69 (s, 1H), 8.34 (d, J = 7.5 Hz, 1H), 7.72 (d, J = 7.9 Hz, 4H), 7.47 (d, J = 7.9 Hz, 2H), 7.33 - 7.17 (m, 6H), 6.91 - 6.85 (m, 4H), 6.82 (d, J = 9.0 Hz, 2H), 5.26 (s, 2H), 5.06 - 4.98 (m, 2H), 4.96 (s, 2H), 4.84 (s, 2H), 4.43 (ddd, J = 9.5, 7.4, 5.4 Hz, 1H), 3.72 (s, 6H), 3.19 (s, 3H), 2.41 (t, J = 7.4 Hz, 2H), 2.13 - 1.91 (m, 2H), 1.29 (s, 12H) ; 13C NMR (101 MHz, DMSO-d5) δ 172.1, 172.0, 166.5, 162.0, 159.1, 157.8, 155.1, 151.1, 150.7, 150.3, 148.0, 139.3, 134.6, 129.8, 129.7, 129.0, 128.0, 127.9, 127.3, 121.0, 120.8, 113.8, 111.1, 83.7, 66.5, 65.7, 65.3, 55.1, 54.9, 51.9, 30.2, 25.8, 24.7; HRMS (ESI) m/z: calcd for C5oH56BN8Oii [M+ H]+ 955.4156, found 955.4191. EXAMPLE 5
( S)-( 4-( ((( 2-Amino-6-( ( ( 4-( ( l,5-bis( ( 4-methoxybenzyl)oxy)-lf5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (15)
H
Figure imgf000037_0001
bis(4-methoxybenzyl) (4-(((2-amino-4-((((4-(4,4,5,5-tetramethyl- l,3,2-dioxaborolan-2- yl)benzyl)oxy)carbonyl)amino)pteridin-6-yl)methyl)(methyl)amino)benzoyl)-i-gluta (14) (0.70 g, 0.73 mmol) was dissolved in a mixture of CH3CN/THF/H20 (200mL, 2/1/1, v/v) and concentrated HCI was added until pH 2. The reaction mixture was stirred at 21 °C for 6 h followed by neutralization with sat. NaHC03 (ca. 50mL) . After removal of the organic solvents in vacuo, the formed precipitate was filtered, washed with H20, and purified by preparative HPLC to afford the title compound 15 (199 mg, 31%) as a yellow solid . XH NMR (400 MHz, DMSO-d5) δ 9.87 (br s, 1H), 8.68 (s, 1H), 8.34 (d, J = 7.5 Hz, 1H), 8.25 (br s, 2H), 7.82 (d, J = 8.0 Hz, 2H), 7.72 (d, J = 8.9 Hz, 2H), 7.42 (d, J = 8.0 Hz, 2H), 7.30 - 7.17 (m, 6H), 6.92 - 6.84 (m, 5H), 6.82 (d, J = 8.9 Hz, 2H), 5.23 (s, 2H), 5.07 - 4.98 (m, 2H), 4.96 (s, 2H), 4.84 (s, 2H), 4.42 (ddd, J = 9.5, 7.5, 5.5 Hz, 1H), 3.72 (s, 6H), 3.19 (s, 3H), 2.41 (t, J = 7.7 Hz, 2H), 2.11 - 1.87 (m, 2H) ; 13C NMR (101 MHz, DMSO-d5) δ 172.2, 172.0, 166.6, 162.1, 159.1, 157.8, 155.1, 151.1, 150.7, 150.3, 148.0, 137.7, 134.3, 129.9, 129.7, 129.1, 128.0, 127.9, 127.1, 121.0, 120.9, 113.8, 111.1, 66.7, 65.7, 65.4, 55.1, 54.9, 51.9, 39.06, 30.2, 25.8; HRMS (ESI) m/z: calcd for C44H46BN80U [M+H]+ 873.3374, found 873.3405. EXAMPLE 6
( 4-( ( ( 2-Amino-4-( ((( 4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl)(methyl)amino)benzoyl)-L-glutamic acid (16)
H
Figure imgf000038_0001
A stirred solution of (S)-(4-((((2-amino-6-(((4-((l,5-bis((4-methoxybenzyl)oxy)-l,5-dioxopentan- 2-yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)phenyl)boroni acid (15) (150 mg, 0.17mmol) in a 5% TFA solution in anhydrous CH2CI2 (16 mL) was stirred for 25 min under a N2 atmosphere. The mixture was concentrated in vacuo and the residue was purified by preparative HPLC to afford the title compound 16 as an orange solid (59 mg, 54%) . XH NMR (400 MHz, DMSO-d5) δ 12.29 (br s, 2H), 9.89 (s, 1 H), 8.68 (s, 1H), 8.20 (d, J = 7.7 Hz, 1H), 8.07 (s, 2H), 7.82 (d, J = 7.9 Hz, 2H), 7.73 (d, J = 8.9 Hz, 2H), 7.43 (d, J = 7.9 Hz, 2H), 7.28 (br s, 2H), 6.82 (d, J = 8.9 Hz, 2H), 5.24 (s, 2H), 4.84 (s, 2H), 4.34 (ddd, J = 9.7, 7.9, 5.0 Hz, 1H), 3.19 (s, 3H), 2.31 (t, J = 7.5 Hz, 2H), 2.11 - 1.99 (m, 1H), 1.99 - 1.79 (m, 1H) ; 13C NMR (101 MHz, DMSO-d5) δ 173.9, 173.7, 166.3, 162.0, 157.8, 155.1, 151.0, 150.7, 150.3, 148.0, 137.7, 134.2, 129.0, 127.0, 121.3, 120.9, 111.1, 66.7, 54.9, 51.7, 39.0, 30.4, 26.0; HRMS (ESI) m/z: calcd for C28H28BN809 [M-H]- 631.2078, found 631.2028.
Figure imgf000039_0001
PREPARATION EXAMPLE 10
4-(((Benzyloxy)carbonyl)amino)benzoic acid (17)
Figure imgf000040_0001
To a solution of 4-methylaminobenzoic acid (4.11 g, 29.9 mmol) and NaHC03 (22.6 g, 269 mmol) in a mixture of H20/THF (100 mL, 1/1) was added benzyl chloroformate (4.26 mL, 29.9 mmol) dropwise at 0 °C. The reaction mixture was stirred for 4 h at 21 °C followed by addition of 20 mL of water. The mixture was stirred for additional 16 h followed by acidification with 1M HCI to pH 3. The precipitate was filtered and dried in vacuo to afford 17 (7.2 g, 89%) as a white solid . XH NMR (400 MHz, DMSO-d5) δ 12.66 (br s, 1H), 10.15 (s, 1H), 7.87 (d, J = 8.7 Hz, 2H), 7.58 (d, J = 8.7 Hz, 2H), 7.51 - 7.17 (m, 5H), 5.17 (s, 2H) ; 13C NMR (101 MHz, DMSO-d5) δ 167.0, 153.2, 143.3, 136.3, 130.5, 128.5, 128.2, 128.2, 124.5, 117.3, 66.1.
PREPARATION EXAMPLE 11
Benzyl (4-(chlorocarbonyl)phenyl)carbamate (18)
Figure imgf000040_0002
To a suspension of 4-(((benzyloxy)carbonyl)amino)benzoic acid ( 17) (2.90 g, 10.7 mmol) in anhydrous CH2CI2 was added 1 drop of DMF followed by thionyl chloride (3.88 mL, 53.4 mmol) and the reaction mixture was refluxed under a N2 atmosphere for 24h. All volatiles were removed in vacuo to afford the title compound 18 (3.1 g, quant.) as a white-pale yellow solid . The product was used for the next step within few hours without further purification. XH NMR (400 MHz, CDCI3) 58.08 (d, J = 8.9 Hz, 2H), 7.54 (d, J = 8.9 Hz, 2H), 7.46 - 7.31 (m, 5H), 6.96 (br s, 1 H), 5.23 (s, 2H) ; 13C NMR (101 MHz, CDCI3) δ 167.4, 152.7, 144.5, 135.5, 133.4, 128.9, 128.8, 128.6, 127.8, 117.8, 67.8. PREPARATION EXAMPLE 12
Dimethyl ( 4-( ( (benzyloxy)carbonyl)a mino) benzoyl) -i -glutamate (19)
Figure imgf000041_0001
A mixture of dimethyl L-glutamate hydrochloride (6- HCI) (2.40 g, 11.3 mmol) and Et3N in 100 mL of anhydrous CH2CI2 was stirred under a N2 atmosphere for 20 min at 21 °C. Then benzyl (4-(chlorocarbonyl)phenyl)carbamate ( 18) (3.0 g, 10.4 mmol) was added and the reaction was stirred for 2 h. The mixture was diluted with EtOAc, washed with 1M HCI (2 x 150 mL), sat. NaHC03 (2 x 150 mL), and brine (200 mL), dried over Na2S04, filtered, and concentrated in vacuo to afford the title compound 19 (4.3 g, 97%) as a white solid . XH NMR (400 MHz, CDCI3) δ 7.77 (d, J = 8.6 Hz, 2H), 7.47 (d, J = 8.6 Hz, 2H), 7.44 - 7.29 (m, 5H), 6.97 (d, J = 10.4 Hz, 1H), 6.96 (s, 1H), 5.21 (s, 2H), 4.86 - 4.68 (m, 1H), 3.77 (s, 3H), 3.65 (s, 3H), 2.57 - 2.36 (m, 2H), 2.36 - 2.24 (m, 1H), 2.20 - 2.07 (m, 1H) ; 13C NMR (101 MHz, CDCI3) δ 173.9, 172.6, 166.6, 153.07, 141.3, 135.9, 128.8, 128.6, 128.5, 128.5, 128.3, 118.0, 67.4, 52.8, 52.4, 52.1, 30.4, 27.3; HRMS (ESI) m/z: calcd for C22H25N207 [M+H]+ 429.1656, found 429.1676.
PREPARATION EXAMPLE 13
Dimethyl (4-aminobenzoyl)-L-glutamate hydrochloride (20-HO)
Figure imgf000041_0002
A solution of dimethyl (4-(((benzyloxy)carbonyl)amino)benzoyl)-i-glutamate (19) (2.0 g, 4.8 mmol) in dry MeOH (100 mL) was treated with 10% Pd/C (10% w/w, 200 mg) . The mixture was stirred under a H2 atmosphere at 21 oC for 12 h, then filtered through a path of celite, concentrated in vacuo over silica gel and purified by flash column chromatography on silica gel using a mixture of EtOAc/Hep (2/1, v/v) as the eluent to give a clear oil corresponding to the free amine 20. Treatment with 2M HCI in ether afforded the hydrochloride salt 20-HCI (1.3 g, 95%) as a white solid. XH NMR (400 MHz, D20) δ 7.88 (d, J = 8.5 Hz, 2H), 7.42 (d, J = 8.5 Hz, 2H), 4.68 (dd, J = 9.4, 5.2 Hz, 1 H), 3.79 (s, 3H), 3.65 (s, 3H), 2.59 (t, J = 7.0 Hz, 2H), 2.42 - 2.30 (m, 1 H), 2.17 (ddt, J = 14.2, 9.4, 6.9 Hz, 1H) ; 13C NMR ( 101 MHz, D20) δ 175.8, 173.7, 169.8, 136.8, 131.5, 129.2, 121.9, 53.0, 52.7, 52.3, 30.2, 25.5; HRMS (ESI) m/z: calcd for Ci4H19N205 [M + H]+ 295.1288, found 295.1297.
PREPARATION EXAMPLE 14
(S)-(4-( ((4-( ( l,5-Dimethoxy-lf5-dioxopentan-2- yl)carbamoyl)phenyl)amino)methyl)phenyl)boronic acid (21)
H
Figure imgf000042_0001
To a solution of dimethyl (4-aminobenzoyl)-i-glutamate hydrochloride 20. HCI (0.80 g, 2.42 mmol) in dry MeOH was added (4-formylphenyl)boronic acid (0.55 g, 3.67 mmol) followed by NaBH3CN (0.80 g, 12.1 mmol) in small portions. The reaction mixture was stirred under a N2 atmosphere at 21 °C for 12 h. Extra (4-formylphenyl)boronic acid (0.55 g, 3.67 mmol) was added to the stirred mixture followed by additional 24 h of stirring for completion of the reaction. The crude mixture was concentrated in vacuo, dissolved in EtOAc ( 150mL), washed with sat. NaHC03 (2 x 150 mL), and brine (150 mL) . The organic phase was dried over Na2S04, filtered, and concentrated in vacuo to afford a pale yellow solid. Purification by preparative HPLC afforded the title compound 21 (699 mg, 67%) as a white solid . 1 NMR (400 MHz, DMSO-d5) δ 8.24 (d, J = 7.5 Hz, 1H), 7.98 (s, 2H), 7.73 (d, J = 7.8 Hz, 2H), 7.62 (d, J = 8.6 Hz, 2H), 7.30 (d, J = 7.8 Hz, 2H), 6.84 (t, J = 6.0 Hz, 1H), 6.58 (d, J = 8.6 Hz, 2H), 4.38 (ddd, J = 9.5, 7.5, 5.6 Hz, 1H), 4.33 (d, J = 6.0 Hz, 2H), 3.61 (s, 3H), 3.57 (s, 3H), 2.41 (t, J = 7.4 Hz, 2H), 2.14 - 2.03 (m, 1H), 2.02 - 1.86 (m, 1H); 13C NMR (101 MHz, DMSO-d5) δ 172.8, 172.7, 166.6, 151.4, 141.6, 134.2, 129.0, 126.2, 120.4, 111.1, 51.8, 51.7, 51.4, 46.0, 30.0, 25.8; HRMS (ESI) m/z: calcd for C2iH25BN207 [M+H] + 429.1828, found 429.1850. EXAMPLE 7 (S)-(4-( ( ((2r4-Diamm' opteridm' -6-yl)methyl)(4-( ( l,5-dimethoxy-lr5-dioxopentan- 2-yl)carbamoyl)phenyl)amino) methyl )phenyl)boronic acid (22)
Figure imgf000043_0001
(S)-(4-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)amino)methyl)phenyl)boronic acid (21) (461 mg, 1.08 mmol) and 6- (bromomethyl)pteridine-2,4-diamine hydrobromide (515 mg, 1.38 mmol) were dissolved in dry DMA (4.85 mL) and the mixture was stirred at 55 °C for 3 days under a N2 atmosphere. Then Et3N (79 uL, 3.21 mmol) was added to the mixture followed by addition of H20. The orange precipitate was purified by preparative HPLC to afford 22 (279 mg, 43%) as a yellow solid . XH NMR (400 MHz, DMSO-d5) δ 8.63 (s, 1H), 8.30 (d, J = 7.5 Hz, 1H), 8.03 (br s, 2H), 7.74 (d, J = 7.9 Hz, 2H), 7.70 - 7.61 (m, 3H), 7.46 (br s, 1H), 7.23 (d, J = 7.9 Hz, 2H), 6.81 (d, J = 8.9 Hz, 2H), 6.62 (br s, 2H), 4.93 (s, 2H), 4.89 (s, 2H), 4.38 (ddd, J = 9.6, 7.5, 5.5 Hz, 1H), 3.60 (s, 3H), 3.56 (s, 3H), 2.40 (t, J = 7.4 Hz, 2H), 2.12 - 2.02 (m, 1H), 2.01 - 1.86 (m, 1H) ; 13C NMR (101 MHz, DMSO-d5) δ 172.7, 172.5, 166.4, 162.9, 162.7, 155.3, 150.4, 149.4, 145.9, 140.4, 134.4, 128.9, 125.7, 121.4, 121.1, 111.5, 54.5, 54.0, 51.8, 51.7, 51.3, 29.9, 25.8; HRMS (ESI) m/z: calcd for C28H32BN807 [M + H]+ 603.2482, found 603.2508.
EXAMPLE 8
(4-((4-Boronobenzyl)((2,4-diaminopteridin-6-yl)methyl)amino)benzoyl)-L-glutamic acid (23)
Figure imgf000044_0001
(S)-(4-((((2,4-diaminopteridin-6-yl)methyl)(4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl) amino)methyl)phenyl)boronic acid 22 (46 mg, 76 μΐηοΙ) was dissolved in 1M NaOH (2mL) and the mixture was stirred for 5 min. The crude was directly purified by preparative HPLC to afford the title compound 23 (17 mg, 40%) as a yellow solid . JH NMR (400 MHz, DMSO) δ 8.63 (s, 1H), 8.08 (d, J = 7.3 Hz, 1H), 8.01 (s, 2H), 7.73 (d, J = 7.9 Hz, 2H), 7.69 - 7.55 (m, 3H), 7.46 (br s, 1 H), 7.22 (d, J = 7.9 Hz, 2H), 6.81 (d, J = 8.9 Hz, 2H), 6.61 (br s, 2H), 4.91 (s, 2H), 4.88 (s, 2H), 4.36 - 4.25 (m, 1 H), 2.36 - 2. 18 (m, 2H), 2.02 - 1.78 (m, 2H). HRMS (ESI) m/z: calcd for C26H28BN807 [M + H] + 575.2169, found 575.2187
Figure imgf000045_0001
Figure imgf000045_0002
PREPARATION EXAMPLE 15 Di-tert-butyl L-glutamate (24)
Figure imgf000045_0003
A suspension of L-glutamic acid (1.47 g, 10.0 mmol) in dry CH2CI2 (40 mL) was placed in a pressure bottle and treated with concentrated H2S04 (1.5 mL). The mixture was cooled to -78 oC followed by addition of condensed isobutylene (25 mL) within the pressure bottle at the same temperature. The bottle was closed and the reaction mixture was stirred at 21 oC for 5 days. Then the pressure bottle was cool to -78 oC and opened to dilute the reaction mixture with EtOAc (100 mL) followed by addition of sat. aq. NaHC03 (100 mL). The organic phase was separated and the aqueous phase washed with EtOAc (3 x 25 mL). The organic phases were collected, dried over Na2S04, filtered, and concentrated in vacuo to afford a clear oil. Purification by flash column chromatography on silica gel using a mixture of EtOAc/Hep (4/1, v/v) as the eluent afforded the title compound 24 as a clear oil ( 1.26 g, 94%) . Rf = 0.35 (silica, eluent EtOAc) . XH NMR (400 MHz, C5D5) δ 3.17 (dd, J = 8.6, 4.9 Hz, 1H), 2.40 - 2.34 (m, 2H), 2.10 - 1.99 (m, 1H), 1.82 - 1.70 (m, 1H), 1.37 (s, 9H), 1.31 (s, 9H), 0.98 (br s, 1H), 0.44 (br s, 1H) ; 13C NMR (101 MHz, C5D5) δ 175.1, 172.4, 80.2, 79.6, 54.7, 32.1, 30.6, 28.1, 28.0.
PREPARATION EXAMPLE 16
4-(((Benzyloxy)carbonyl)(methyl)amino)benzoic acid (25)
Figure imgf000046_0001
To a solution of 4-(methylamino)benzoic acid (3.03 g, 20.1 mmol) in anhydrous THF (20 mL) was added NaHC03 (2.05 g, 24.4 mmol) followed by benzyl chloroformate (1.70 mL, 12.0 mmol) dropwise at 0 °C. The reaction mixture was allowed to warm to 21 °C and was stirred for 2 h. Then the mixture was diluted with THF (20 mL), filtered, and concentrated in vacuo. The residue was dissolved in 1M NaOH (100 mL), washed with Et20 (2 x 100 mL), acidified with 6M HCI to pH 3, and extracted with EtOAc (3 x 75 mL) . The collected organic phases were dried over Na2S04, filtered and concentrated in vacuo to afford a pale orange solid. Recrystallization in EtOAc afforded the title compound 25 (4.49 g, 78%) as a white solid. XH NMR (400 MHz, CDCI3) δ 8.09 (d, J = 8.8 Hz, 2H), 7.40 (d, J = 8.7 Hz, 2H), 7.38 - 7.28 (m, 5H), 5.21 (s, 2H), 3.39 (s, 3H) ; 13C NMR (101 MHz, CDCI3) δ 171.0, 155.1, 148.22, 136.3, 131.1, 128.7, 128.3, 128.1, 126.1, 124.7, 67.9, 37.4.
PREPARATION EXAMPLE 17 Benzyl (4-(chlorocarbonyl)phenyl)(methyl)carbamate (26)
Figure imgf000046_0002
A solution of 4-(((benzyloxy)carbonyl)(methyl)amino)benzoic acid ( 25) (1.0 g, 3.51 mmol) in anhydrous CH2CI2 at 0 °C was treated with thionyl chloride (1.27 mL, 17.53 mmol) . The mixture was allowed to warm to 21 °C and stirred for 24 h under a N2 atmosphere. Concentration in vacuo afforded the title compound 26 (1.05 g, quant.) as a pale orange- pink solid . The acyl chloride 26 was used for the next step within few hours and without further purification. XH NMR (400 MHz, CDCI3) δ 8.09 (d, J = 8.7 Hz, 2H), 7.40 (d, J = 8.7 Hz, 2H), 7.38 - 7.28 (m, 5H), 5.21 (s, 2H), 3.39 (s, 3H) .
PREPARATION EXAMPLE 18
Di-tert-butyl (4-(((benzyloxy)carbonyl)(methyl)amino)benzoyl)-L-glutamate (27)
Figure imgf000047_0001
A solution of benzyl (4-(chlorocarbonyl)phenyl)(methyl)carbamate ( 26) (1.06 g, 3.49 mmol) in dry CH2CI2 (10 mL) was added dropwise to a stirred mixture of di-tert-butyl i-glutamate (24) (996 mg, 3.48 mmol) and Et3N (0.97 mL, 6.98 mmol) in CH2CI2 (15 mL) . The reaction mixture was stirred at 21 °C under a N2 atmoshphere for 2 h, then diluted with EtOAc (150 mL), washed with 1M HCI (2 x 100 mL), sat. aq. NaHC03 (2 x 100 mL), and brine (100 mL) . The organic phase was dried over Na2S04, and loaded in silica gel for purification by flash column chromatography on silica gel using a mixture of EtOAc/Hep (7/15, v/v) as the eluent to give the title compound 27 (1.75 g, 95%) as a thick orange oil . Rf = 0.53 (silica, eluent EtOAc/Hep, 1/1, v/v) . XH NMR (400 MHz, CDCI3) δ 7.81 (d, J = 8.7 Hz, 2H), 7.42 - 7.29 (m, 7H), 6.98 (d, J = 7.4 Hz, 1H), 5.18 (s, 2H), 4.75 - 4.53 (m, 1H), 3.35 (s, 3H), 2.53 - 2.13 (m, 3H), 2.12 - 1.95 (m, 1H), 1.49 (s, 9H), 1.41 (s, 9H) ; 13C NMR (101 MHz, CDCI3) δ 172.8, 171.4, 166.4, 155.2, 146.3, 136.4, 131.3, 128.7, 128.3, 128.1, 127.9, 125.2, 82.6, 81.0, 67.8, 53.0, 37.6, 31.8, 28.2, 28.2, 27.6; PREPARATION EXAMPLE 19
Di-tert-butyl (4-(methylamm' o)benzoyl)-L-glutamate (28)
Figure imgf000048_0001
To a solution of di-tert-butyl (4-(((benzyloxy)carbonyl)(methyl)amino)benzoyl)-z-glutamate (27) (1.35 g, 2.63 mmol) in dry MeOH (20 mL) was added 10% Pd/C (10% w/w, 135 mg) and the mixture was stirred for 3 days under a H2 atmosphere at 21 °C. The crude mixture was filtered through a path of celite, concentrated in vacuo and purified by flash column chromatography on silica gel using a mixture of toluene/EtOAc/Et3N (8/2/0.1) as the eluent to afford 28 (895 mg, 87%) as an white solid . Rf = 0.24 (silica, eluent EtOAc/Hep, 3/7, v/v) ; XH NMR (400 MHz, CDCI3) δ 7.69 (d, J = 8.7 Hz, 2H), 6.72 (d, J = 7.5 Hz, 1H), 6.59 (d, J = 8.7 Hz, 2H), 4.72 - 4.57 (m, 1 H), 4.36 (br s, 1H), 2.88 (s, 3H), 2.47 - 2.13 (m, 3H), 2.07 - 1.92 (m, 1 H), 1.48 (s, 9H), 1.41 (s, 9H) ; 13C NMR (101 MHz, CDCI3) δ 172.6, 171.7, 166.9, 151.8, 128.8, 122.2, 111.5, 82.2, 80.7, 52.6, 31.7, 30.4, 28.1, 28.0, 27.9; HRMS (ESI) m/z: calcd for C2iH33N205 [M + H]+ 393.2384, found 393.2430.
PREPARATION EXAMPLE 20
Di-tert-butyl (4-(((2r4-diaminopteridin-6-yl)methyl)(methyl)amm' o)benzoyl)-L- glutamate hydroformate (29-HCOOH)
Figure imgf000048_0002
To a solution of 6-(bromomethyl)pteridine-2,4-diamine hydrobromide (0,72 g, 2.14 mmol) in dry DMAc (25 mL) was added di-tert-butyl (4-(methylamino)benzoyl)-i-glutamate (28) (0,76 g, 1.95 mmol) and the mixture was stirred for 24h at 55 °C under a N2 atmosphere. The crude mixture was concentrated in vacuo and the dark residue was purified by preparative HPLC to afford the title compound 29-HCOOH (430 mg, 36%) as an orange solid. 1H NMR (400 MHz, DMSO-dg) δ 8.57 (s, 1H), 8.16 (d, J = 7.6 Hz, 1H), 8.14 (s, 1H), 7.72 (d, J = 9.0 Hz, 2H), 7.66 (br s, 1H), 7.44 (br s, 1H), 6.82 (d, J = 9.0 Hz, 2H), 6.61 (br s, 2H), 4.78 (s, 2H), 4.27 (ddd, J = 9.7, 7.5, 5.2 Hz, 1H), 3.21 (s, 3H), 2.29 (t, J = 7.6 Hz, 2H), 2.04 - 1.94 (m, 1H), 1.93 - 1.80 (m, 1H), 1.39 (s, 9H), 1.37 (s, 9H) ; 13C NMR (101 MHz, DMSO-d5) δ 171.6, 171.4, 166.4, 162.9, 162.8, 162.7, 155.1, 150.9, 149.1, 146.0, 128.9, 121.4, 121.0, 111.0, 80.3, 79.7, 54.8, 52.3, 38.7, 31.4, 27.7, 27.6, 26.0; HRMS (ESI) m/z: calcd for C28H39N805 [M+ H]+ 567.3038, found 567.3055.
EXAMPLE 9
(S)-(4-( ( ((2-Amino-6-( ((4-( ( l,5-di-tert-butoxy-l,5-dioxopentan-2- yl) carbamoyl) ^phenyl) ( methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (30)
H
Figure imgf000049_0001
To a solution of di-tert-butyl (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoyl)- i-glutamate hydroformate 29 HCOOH (280mg, 0.46 mmol) in anhydrous CH2CI2 (15 mL) was added DMAP (279 mg, 2.29 mmol) followed by DIPEA (0.40 mL, 2.29 mmol) . The mixture was cooled to 0 °C and a solution of 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzyl carbonochloridate (1) (678 mg, 2.29 mmol) in CH2CI2 (10 mL) was added dropwise. The reaction was allowed to warm to 21 °C and stirred for 4 h under a N2 atmosphere. Then the crude mixture was concentrated in vacuo and the residue was purified by preparative HPLC. The CH3CN/H20 fractions containing the pinacolate intermediate were poured together into a 250 mL round bottom flask and concentrated HCI (0.3 mL, pH 2) was added . The reaction mixture was stirred for 16h at 21 °C and quenched with sat. NaHC03 (ca. 50 mL) . After removal of CH3CN in vacuo, the precipitate was filtered, washed with H20 and dried in vacuo to afford 30 as a yellow solid (131 mg, 39%) . XH NMR (400 MHz, DMSO-d5) δ 9.88 (s, 1H), 8.69 (s, 1H), 8.17 (d, J = 7.6 Hz, 1H), 8.07 (s, 2H), 7.82 (d, J = 7.8 Hz, 2H), 7.72 (d, J = 8.8 Hz, 2H), 7.43 (d, J = 7.8 Hz, 2H), 7.28 (br s, 2H), 6.82 (d, J = 8.8 Hz, 2H), 5.24 (s, 2H), 4.84 (s, 2H), 4.40 - 4.19 (m, 1H), 3.20 (s, 3H), 2.29 (t, J = 7.4 Hz, 2H), 2.04 - 1.93 (m, 1H), 1.93 - 1.82 (m, 1H), 1.38 (s, 9H), 1.36 (s, 9H) ; 13C NMR (101 MHz, DMSO-dg) δ 171.6, 171.4, 166.4, 162.0, 157.8, 155.1, 151.0, 150.7, 150.3, 148.0, 137.7, 134.2, 129.0, 127.0, 121.2, 120.8, 111.1, 80.4, 79.7, 66.7, 54.9, 52.3, 38.7, 31.4, 27.7, 27.7, 26.0; HRMS (ESI) m/z: calcd for
Figure imgf000050_0001
[M + H]+ 745.3475, found 745.3493
Figure imgf000050_0002
PREPARATION EXAMPLE 21
Diallyl (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoyl)glutamate
(32)
Figure imgf000051_0001
Thionyl chloride (6.38 mL, 88.0 mmol) was added dropwise at 0 °C to allyl alcohol (15 mL) and the mixture was stirred for 15 min at 21 °C. Then, methotrexate (12) (800 mg, 1.76 mmol) was added to the mixture and the reaction was stirred for 2 days under a N2 atmosphere. The crude mixture was then concentrated in vacuo and purified by column chromatography on reverse phase silica gel using a mixture of H20/CH3CN (from 0% CH3CN to 80%) to afford the title compound 31 (450 mg, 48%) as a yellow solid. 1H NMR (400 MHz, DMSO-d5) δ 8.59 (s, 1H), 8.36 (d, J = 7.4 Hz, 1H), 7.88 (br s, 1H), 7.73 (d, J = 8.9 Hz, 2H), 7.66 (br s, 1H), 6.92 - 6.68 (m, 4H), 5.96 - 5.73 (m, 2H), 5.34 - 5.23 (m, 2H), 5.21 - 5.13 (m, 2H), 4.79 (s, 2H), 4.60 - 4.55 (m, 2H), 4.53 (d, J = 5.4 Hz, 2H), 4.43 (ddd, J = 9.6, 7.4, 5.3 Hz, 1H), 3.22 (s, 3H), 2.50 - 2.42 (m, 2H), 2.18 - 1.84 (m, 2H) ; 13C NMR (101 MHz, DMSO-d5) δ 172.4, 172.2, 167.0, 163.2, 162.3, 154.3, 151.5, 149.6, 147.1, 133.1, 132.9, 129.5, 122.0, 121.3, 118.2, 118.0, 111.5, 65.2, 64.9, 55.3, 52.3, 38.9, 30.6, 26.2; HRMS (ESI) m/z: calcd for C26H3iN805 [M+ H]+ 535.2412, found 535.2436.
EXAMPLE 10
(4-( ( ((2-Amino-6-( ((4-( ( l,5-bis(allyloxy)-l,5-dioxopentan-2- yl) carbamoyl) ^phenyl) ( methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (33)
H
Figure imgf000052_0001
To a suspension of diallyl (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoyl)- glutamate (31) (320 mg, 0.60 mmol) in dry CH2CI2 (15 mL) was added DMAP (366 mg, 2.99 mmol) followed by DIPEA (0.521 mL, 2.99 mmol) . The mixture was cooled to 0 °C and a solution of 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzyl carbonochloridate 1 (1.07 g, 3.59 mmol) in CH2CI2 (7 mL) was added dropwise. The reaction was allowed to warm to 21 °C and stirred for 5 h under a N2 atmosphere. The crude mixture was concentrated in vacuo to afford a dark yellow solid . The solid residue was purified by preparative HPLC. The CH3CN/H20 fractions containing the pinacolate intermediate were poured together into a 250mL round bottom flask and HCI cc. (0.3 mL, ca. pH 2) was added . The reaction mixture was stirred for 16h at room temperature and quenched with excess of sat. NaHC03 (ca. 50 mL) . After removal of CH3CN in vacuo a yellow solid was filtered, washed with H20 and dried in vacuo to afford 36 (82 mg, 19%) as a yellow solid . 1H NMR (400 MHz, DMSO-d5) δ 9.88 (s, 1H), 8.69 (s, 1H), 8.36 (d, J = 7.5 Hz, 1H), 8.07 (s, 2H), 7.82 (d, J = 7.9 Hz, 2H), 7.72 (d, J = 8.9 Hz, 2H), 7.43 (d, J = 7.9 Hz, 2H), 7.28 (br s, 2H), 6.83 (d, J = 9.0 Hz, 2H), 5.99 - 5.73 (m, 2H), 5.35 - 5.26 (m, 2H), 5.24 (s, 2H), 5.21 - 5.13 (m, 2H), 4.84 (s, 2H), 4.61 - 4.45 (m, 4H), 4.43 (ddd, J = 9.7, 7.5, 5.4 Hz, 1H), 3.20 (s, 3H), 2.46 (t, J = 7.5 Hz, 2H), 2.18 - 1.84 (m, 2H) . 13C NMR (101 MHz, DMSO-d5) δ 171.9, 171.7, 166.5, 162.0, 157.8, 155.1, 151.0, 150.7, 150.3, 147.9, 137.7, 134.2, 132.6, 132.5, 129.0, 127.0, 120.9, 120.8, 117.7, 117.6, 111.1, 66.6, 64.7, 64.4, 54.9, 51.9, 38.7, 30.1, 25.7. HRMS (ESI) m/z: calcd for C34H38BN809 [M + H]+ 713,2849, found 713.2883
Figure imgf000053_0001
PREPARATION EXAMPLE 22
2-(4-(Isocyanatomethyl)phenyl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane (34)
Figure imgf000054_0001
To a suspension of (4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)phenyl)methanamine hydrochloride (148 mg, 0.5 mmol) in anhydrous dioxane (3.0 mL) was added Et3N (0.2 mL, 1.4 mmol). After stirring for 30 min, COCI2 (2.0 mL, 15% in toluene) was added and the mixture was stirred for 16 h under a N2 atmosphere at 21 °C. Next, the reaction was diluted with toluene (10 mL), filtered, and concentrated in vacuo to afford the title compound 34 (138 mg, >95%), which was used for next step without further purification. EXAMPLE 11
(S)-(4-((3-(2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)ureido)methyl)phenyl)boronic acid (35)
H
Figure imgf000054_0002
To a solution of dimethyl (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino) benzoyl)-i- glutamate 8 (100 mg, 0.2 mmol) in CH2CI2 (5.0 mL) was added DIPEA (72 μί, 0.4 mmol) and DMAP (51 mg, 0.4 mmol), followed by dropwise addition of a solution of 2-(4- (isocyanatomethyl)phenyl)-4,4,5,5-tetramethyl-l,3,2-dioxaborolane 34 (107 mg, 0.4 mmol) in CH2CI2 at 0 °C. The reaction was allowed to warm to 21 °C and stirred for 16 h under a N2 atmosphere. The mixture was diluted with CH2CI2 (100 mL), washed with 1 M aq. HCI (2 x75 ml_), sat. aq. NaHC03 (2 x 75mL), and brine (75 mL). The organic phase was dried over Na2S04, filtered, and concentrated in vacuo to afford a solid that was purified by preparative HPLC. The CH3CN/H20 fractions containing the pinacolate intermediate were poured together and HCI cc. was added until pH ~ 2. The reaction mixture was stirred for 16 h at 21 °C and quenched with sat. aq. NaHC03 (50 mL). After removal of the CH3CN in vacuo the formed precipitate was filtered, washed with H20 and dried in vacuo to afford the title compound 35 (13 mg, 10%) as a yellow solid. UPLC-MS (method A) : Rt = 1.7 min; MS (ESI+) m/z: calcd for C30H35BN9O8 [M + H]+ 660.3, found 660.3; MS (ESI ) m/z: calcd for C30H33BN9O8 [M-H]" 658.3, found 658.2.
Figure imgf000055_0001
EXAMPLE 12
(S)-5-((4-Boronobenzyl)oxy)-4-(4-(((2,4-diaminopteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxopentanoic acid (37)
Figure imgf000055_0002
To a solution of methotrexate 12 (100 mg, 0.2 mmol) in dry DMF (5.0 mL) was added 1,1,3,3-tetramethylguanidine (82 μί, 0.7 mmol) followed by (4- (bromomethyl)phenyl)boronic acid (47 mg, 0.2 mmol) and the reaction mixture was stirred at 50 °C for 3 days. The crude mixture was then purified by preparative HPLC to afford the title compound 37 as a yellow solid (15 mg, 12%) . MS (ESI+) m/z: calcd for C27H3oBN807 [M+H]+ 589.2, found 589.4; MS (ESI ) m/z: calcd for C27H28BN807 [M-H]" 587.2, found 587.2.
EXAMPLE 13
(S)-5-((4-Boronobenzyl)oxy)-2-(4-(((2,4-diaminopteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxopentanoic acid (38)
Figure imgf000056_0001
To a solution of methotrexate 12 (100 mg, 0.2 mmol) in dry DMF (5.0 mL) was added 1,1,3,3-tetramethylguanidine (82 μί, 0.7 mmol) followed by (4- (bromomethyl)phenyl)boronic acid (47 mg, 0.2 mmol) and the reaction mixture was stirred at 50 °C for 3 days. The crude mixture was then urified by preparative HPLC to afford the title compound 38 as a yellow solid (13 mg, 10%) . MS (ESI+) m/z: calcd for C27H3oBN807 [M+H] + 589.2, found 589.4; MS (ESI ) m/z: calcd for C27H28BN807 [M-H]" 587.2, found 587.2.
EXAMPLE 14
(S)-(4-(((5-((4-Boronobenzyl)oxy)-2-(4-(((2,4-diaminopteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxopentanoyl)oxy)methyl)phenyl)boronic acid (39)
Figure imgf000057_0001
To a solution of methotrexate 12 (100 mg, 0.2 mmol) in dry DMF (5.0 mL) was added 1,1,3,3-tetramethylguanidine (82 μΙ_, 0.7 mmol) followed by (4- (bromomethyl)phenyl)boronic acid (94 mg, 0.4 mmol) and the reaction mixture was stirred at 50 °C for 3 days. The crude mixture was then purified by preparative HPLC to afford the title compound 39 as a yellow solid (22 mg, 14%). MS (ESI+) m/z: calcd for
Figure imgf000057_0002
[M+H]+ 723.3, found 723.3.
Figure imgf000058_0001
EXAMPLE 15
(S)-(4-(((2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)amino)methyl)phenyl)boronic acid (40)
Figure imgf000058_0002
To a solution of (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoyl)-i-glutamate hydrochloride 8 (100 mg, 0.2 mmol) in dry DMF (5.0 mL) was added K2C03 (86 mg, 0.6 mmol) followed by (4-(bromomethyl)phenyl)boronic acid (44 mg, 0.2 mmol) and the reaction mixture was stirred at 90 °C for 60 min. The crude was then purified by preparative HPLC to afford the title compound 40 (10 mg, 8%) as a solid. MS (ESI+) m/z: calcd for C29H34BN807 [M+H]+ 617.3, found 617.2; MS (ESI ) m/z: calcd for C29H32BN807 [M-H]" 615.2, found 615.2. EXAMPLE 16
(S)-(4-(((4-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-2- yl)amino)methyl)phenyl)boronic acid (41)
Figure imgf000059_0001
To a solution of (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoyl)-i-glutamate hydrochloride 8 (100 mg, 0.2 mmol) in dry DMF (5.0 mL) was added K2C03 (86 mg, 0.6 mmol) followed by (4-(bromomethyl)phenyl)boronic acid (44 mg, 0.2 mmol) and the reaction mixture was stirred at 90 °C for 60 min. The crude was then purified by preparative HPLC to afford the title compound 41 (6 mg, 5%) as a solid. MS (ESI+) m/z: calcd for C29H34BN807 [M+H]+ 617.3, found 617.2; MS (ESI ) m/z: calcd for C29H32BN807 [M-H]" 615.2, found 615.2.
EXAMPLE 17
(S)-((((6-(((4-((l,5-Dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl) (methyl )amino)methyl )pteridine-2,4- diyl)bis(azanediyl))bis(methylene))bis(4,l-phenylene))diboronic acid (42)
Figure imgf000059_0002
To a solution of 8 (100 mg, 0.2 mmol) in dry DMF (5.0 mL) was added K2C03 (86 mg, 0.6 mmol) followed by (4-(bromomethyl)phenyl)boronic acid (88 mg, 0.4 mmol) and the reaction mixture was stirred at 90 °C for 60 min. The crude was then purified by preparative HPLC to afford the title compound 42 (9 mg, 6%) as a solid. MS (ESI+) m/z: calcd for C35H41B2N809 [M+H]+ 751.3, found 751.3; MS (ESI ) m/z: calcd for C36H39B2N809 [M-H]" 749.2, found 749.3.
Figure imgf000060_0001
EXAMPLE 18
(S)-((((((6-(((4-(( l,5-Dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl) (methyl )amino)methyl )pteridine-2,4- diyl)bis(azanediyl))bis(carbonyl))bis(oxy))bis(methylene))bis(4,l- phenylene))diboronic acid (43)
Figure imgf000061_0001
To a suspension of dimethyl (4-(((2,4-diaminopteridin-6-yl)methyl)(methyl)amino)benzoyl)- i-glutamate hydrochloride 8 (313 mg, 0.68 mmol) in dry CH2CI2 (25 mL) was added DMAP (417 mg, 3.42 mmol) followed by DIPEA (0.60 mL, 3.42 mmol) . The mixture was cooled to 0 °C and a solution of 4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2-yl)benzyl carbonochloridate (1) (1.01 g, 3.42 mmol) in CH2CI2 (10 mL) was added dropwise. The reaction was allowed to warm to 21 °C and stirred for 5 h under a N2 atmosphere. The mixture was then diluted with CH2CI2 (100 mL), washed with 1 M aq . HCI (2 x75 mL), sat. aq . NaHC03 (2 x 75mL), and brine (75 mL) . The organic phase was dried over Na2S04, filtered, and concentrated in vacuo to afford a yellow solid that was purified by preparative HPLC. The CH3CN/H20 fractions containing the pinacolate intermediate were poured together and HCI cc. was added until pH ~2 was added . The reaction mixture was stirred for 16 h at 21 °C and quenched with sat. aq . NaHC03 (50 mL) . After removal of the CH3CN in vacuo the formed precipitate was filtered, washed with H20 and dried in vacuo to afford the title compound 43 (15 mg, 3%) as a yellow solid . XH NMR (400 MHz, DMSO) δ 10.77 (br s, 1H), 10.33 (br s, 1H), 8.94 (s, 1H), 8.35 (d, J = 7.4 Hz, 2H), 8.09 (s, 2H), 8.06 (s, 2H), 7.82 (d, J = 7.9 Hz, 2H), 7.79 (d, J = 8.1 Hz, 2H), 7.72 (d, J = 8.8 Hz, 2H), 7.44 (d, J = 8.1 Hz, 2H), 7.41 (d, J = 8.0 Hz, 2H), 6.84 (d, J = 8.9 Hz, 2H), 5.26 (s, 2H), 5.20 (s, 2H), 4.95 (s, 2H), 4.49 - 4.28 (m, 1H), 3.60 (s, 3H), 3.56 (s, 3H), 3.23 (s, 3H), 2.40 (t, J = 7.4 Hz, 2H), 2.17 - 1.80 (m, 1H) . RP-UPLC-MS (method A) : Rt = 1.34 min; MS (ESI+) m/z: calcd for C38H4iB2N8Oi3 [M + H]+ 839.3, found 839.2; MS (ESI ) m/z: calcd for C38H39B2N8Oi3 [M-H]" 837.3, found 837.3.
Figure imgf000062_0001
EXAMPLE 19
(2-(4-(((2-Amino-4-((((4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl) (methyl )amino)benzamido)-5-oxo-5-( 2-oxothiazolidin-3-yl)penta acid (44)
Figure imgf000062_0002
To a solution of 16 (100 mg, 0.16 mmol) in dry DMF (5 mL) was added DCC (55 mg, 0.27 mmol) followed by DMAP (58 mg, 0.47 mmol) . The reaction mixture was stirred for 15 min under a N2 atmosphere at 21 °C followed by addition of thiazolidin-2-one (28 mg, 0.27 mmol) and additional stirring for 16 h. Filtration of the crude reaction and concentration of the filtrate in vacuo afforded a residue which was purified by preparative HPLC to give the title compound 44 as a solid (4.5 mg, 4%) . MS (ESI+) m/z: calcd for C3iH32BN908S [M+ H-H20] + 700.5, found 699.9; MS (ESI ) m/z: calcd for C3iH3iBN909S [M-H]" 716.2, found 716.3. EXAMPLE 20
4-(4-(((2-Amino-4-((((4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl) (methyl )amino)benzamido)-5-oxo-5-( 2-oxothiazolidin-3-yl)penta acid (45)
H
Figure imgf000063_0001
To a solution of 16 (100 mg, 0.16 mmol) in dry DMF (5 mL) was added DCC (55 mg, 0.27 mmol) followed by DMAP (58 mg, 0.47 mmol) . The reaction mixture was stirred for 15 min under a N2 atmosphere at 21 °C followed by addition of thiazolidin-2-one (28 mg, 0.27 mmol) and additional stirring for 16 h. Filtration of the crude reaction and concentration of the filtrate in vacuo afforded a residue which was purified by preparative HPLC to give the title compound 45 as a solid (2.0 mg, 2%) . MS (ESI+) m/z: calcd for C3iH32BN908S [M+ H-H20] + 700.5, found 699.9; MS (ESI ) m/z: calcd for C3iH3iBN909S [M-H]" 716.2.5, found 716.3.
EXAMPLE 21
(4-((((2-Amino-6-(((4-(( l,5-dioxo-l,5-bis(2-oxothiazolidin-3-yl)pentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (46)
Figure imgf000063_0002
To a solution of 16 (100 mg, 0.16 mmol) in dry DMF (5 mL) was added DCC (82 mg, 0.39 mmol) followed by DMAP (77 mg, 0.63 mmol) . The reaction mixture was stirred for 15 min under a N2 atmosphere at 21 °C followed by addition of thiazolidin-2-one (41 mg, 0.39 mmol) and additional stirring for 16 h. Filtration of the crude reaction and concentration of the filtrate in vacuo afforded a residue which was purified by preparative HPLC to give the title compound 46 as a solid (8.0 mg, 6%) . UPLC-MS (method C) : Rt = 2.0 min; MS (ESI+) m/z: calcd for C34H34BN10O8S2 [M + H-H20]+ 785.2, found 784.4.
Figure imgf000064_0001
EXAMPLE 22
2-(4-( (4-Boronobenzyl)(( 2,4-diaminopteridin-6-yl)methyl)amino)benzamido)-5- oxo-5-(2-oxothiazolidin-3-yl)pentanoic acid (47)
Figure imgf000065_0001
To a solution of 23 (95 mg, 0.16 mmol) in dry DMF (5 mL) was added DCC (55 mg, 0.27 mmol) followed by DMAP (58 mg, 0.47 mmol) . The reaction mixture was stirred for 15 min under a N2 atmosphere at 21 °C followed by addition of thiazolidin-2-one (28 mg, 0.27 mmol) and additional stirring for 16 h. Filtration of the crude reaction and concentration of the filtrate in vacuo afforded a residue which was purified by preparative HPLC to give the title compound 47 as a solid (4.0 mg, 4%) . MS (ESI+) m/z: calcd for C29H3iBN907S [M+ H]+ 660.2, found 660.2; MS (ESI ) m/z: calcd for C29H29BN907S [M-H]" 658.5, found 658.2.
EXAMPLE 23
4-(4-( (4-Boronobenzyl)(( 2,4-diaminopteridin-6-yl)methyl)amino)benzamido)-5- oxo-5-(2-oxothiazolidin-3-yl)pentanoic acid (48)
Figure imgf000065_0002
To a solution of 23 (95 mg, 0.16 mmol) in dry DMF (5 mL) was added DCC (55 mg, 0.27 mmol) followed by DMAP (58 mg, 0.47 mmol) . The reaction mixture was stirred for 15 min under a N2 atmosphere at 21 °C followed by addition of thiazolidin-2-one (28 mg, 0.27 mmol) and additional stirring for 16 h. Filtration of the crude reaction and concentration of the filtrate in vacuo afforded a residue which was purified by preparative HPLC to give the title compound 48 as a solid (3.1 mg, 3%). MS (ESI+) m/z: calcd for C32H34BN10O7S2 [M+H] + 660.2, found 660.2; MS (ESI ) m/z: calcd for C29H29BN907S [M-H]" 658.5, found 658.2
EXAMPLE 24 (4-((((2,4-Diaminopteridin-6-yl)methyl)(4-((l,5-dioxo-l,5-bis(2-oxothiazolidin-3- yl)pentan-2-yl)carbamoyl)phenyl)amino)methyl)phenyl)boronic acid (49)
Figure imgf000066_0001
To a solution of 23 (95 mg, 0.16 mmol) in dry DMF (5 mL) was added DCC (55 mg, 0.27 mmol) followed by DMAP (58 mg, 0.47 mmol). The reaction mixture was stirred for 15 min under a N2 atmosphere at 21 °C followed by addition of thiazolidin-2-one (28 mg, 0.27 mmol) and additional stirring for 16 h. Filtration of the crude reaction and concentration of the filtrate in vacuo afforded a residue which was purified by preparative HPLC to give the title compound 49 as a solid (9.0 mg, 7%). UPLC-MS (method C) : Rt = 1.95 min; MS (ESI+) m/z: calcd for C29H31BN907S [M + H]+ 745.2, found 745.3.
Figure imgf000067_0001
Figure imgf000067_0002
TEST EXAMPLE 1
In vitro assays
Activation of prodrugs under oxidative conditions To a mixture of DMSO (150 μί.) and aq. PBS buffer (650 μΙ-, pH 7.4) in an Eppendorf tube (1.5 mL) placed in a thermomixer at 37 °C was added a solution of prodrug (50 μΙ_, 1 mM in DMSO) followed by addition of diclofenac as internal standard solution (50μΙ_, 1 mM in DMSO). The assay was initiated by addition of a solution of H202 in PBS (50 μΙ_, 10 mM) followed by vortex mixing. The resulting mixture was incubated at 37 °C at 1000 rpm and aliquots were analysed by RP-UPLC-MS after 5, 15, 30, 60, 90 min and 2, 3 and 4 h. Further data points were analysed for compounds 22 and 23 (16, 24 and 48 h). A control sample (no H202 addition but PBS) was run in parallel. Every prodrug activation assay was performed in triplicates.
Figure imgf000068_0001
Physicochemical and pharmacokinetic assays
Chemical Stability pH 7.4 / PBS stability. Chemical stability at pH 7.4 for compounds 16 and 23 was assessed using diclofenac as an internal standard. To 490 μΙ_ of a pre-warmed solution of 20 μΜ diclofenac in PBS (0.1% DMSO) is added 10 μ ί. of a ImM DMSO solution of compound 16 and 23 (in triplicates) . The mixture was incubated at 1000 rpm at 37 °C in an Eppendorf Thermomixer C ( 1.5 mL) and samples were taken for analysis by RP-UPLC-MS after 30 min, lh, 2h, 4h, 8h, 24h and 48h.
Chemical Stability (pH 7.4)
Prodrug tin (h)
16 238
23 577
Solubility. Kinetic solubility at 100 μΜ with 1% DMSO. Briefly, the kinetic solubility, utilizing test compound from 10 mM DMSO stock solution, is measured at a final compound concentration of 100 μΜ and 1% DMSO. Test compound is added to 100 mM potassium phosphate buffer, pH 7.4, and incubated at 37 °C for 20 hours in a heater-shaker. After incubation, the samples are centrifuged at 3000xg at 37 °C for 30 min to pellet insoluble material and an aliquot of the supernatant is taken for analysis. After dilution of the sample, the concentration of dissolved compound is quantified by LC-MS/MS analysis. Plasma protein binding assay. Briefly, the fraction unbound drug (fu) in plasma from human or other animal species was determined by equilibrium dialysis at 37 °C for 4 hours using a Rapid Equilibrium Dialysis (RED) device. The drug molecule at a concentration of 10 μΜ is added to 50% plasma and dialyzed against isotonic phosphate buffer (67 mM, pH 7.4). After dialysis, the drug concentration in the buffer and plasma is quantified by LC-MS/MS analysis. In parallel, the stability of the drug molecule in plasma is determined by incubating drug- spiked plasma (10 μΜ) at 37 °C for 4 hours, meanwhile the control plasma sample is kept in the freezer. The concentration of drug in both samples is quantified by LC-MS/MS analysis.
Pooled human plasma originating from healthy donors, 1 male and 1 female (non-smoking), was obtained from Uppsala Academic Hospital. Citrate was used as anticoagulant. CDl-1 Mouse plasma K2 EDTA is obtained from Innovative Research Inc. Plasma is stored frozen in aliquots to avoid repeated freeze-thaw cycles. 50% plasma is made by thawing human or animal plasma at rt. and mixing it with a equal volume of isotonic phosphate buffer.
Microsomal stability. The in vitro metabolic stability assay uses liver microsomes. Compound is dissolved in 100 mM KP04 buffer pH 7.4 to a ΙμΜ final concentration. The assay is initiated by addition of NADPH and incubated for up to 40 min (THERMOstar, BMG Lab Technologies) with microsomes. Experiments are terminated at different time points by addition of acetonitrile. The amount of parent compound remaining is analyzed by LC-MS/MS. The natural logarithm of relative amount parent compound remaining is plotted against time and the first-order rate constant of consumption is determined by linear regression. In vitro half life is expressed in minutes and in vitro clearance in μΙ/img x min), respectively.
Cellular Assays
Cell Culture. The human breast cancer MCF-7 (Sigma) and human large cell lung cancer NCIH-460 (ATTC) cell lines were cultured in a humidified, 5% C02 atmosphere at 37 °C in Dulbecco 's Modified Eagle 's Medium (DMEM) (Sigma) or Roswell Park Memorial Institute medium (RPMI) 1640 (Sigma) supplemented with 10% fetal bovine serum (FBS, heat- inactivated, Fisher Scientific) and 1% penicillin/streptomycin. Both cell lines were subcultured every 2-3 days. Pre- activation of compounds with H202- A 125 μΜ solution of tested compound was prepared in a 1.25 mM H202 in DMSO: PBS (1 : 1), placed in an Eppendorf tube and shaken at 21 °C for 24 h at 1000 rpm in an Eppendorf Thermomixer C (1.5 mL). The activation was followed by RP-UPLC-MS (λ = 306 nm) after 0 min, 15 min, 1 h, 4 h, and 24 h. A negative control consisting of a 125 μΜ solution of compound in a mixture of DMSO: PBS (1 : 1) without H202 was run in parallel to the activation assay in the same conditions.
Evaluation of cell viability. The 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2- (4-sulfophenyl)-2H-te-trazolium (MTS) assay (Promega Biotech AB, Stockholm, Sweden ) was used to determine the in vitro antiproliferative effect of the compounds. This assay is based on the principle that cells have the ability to reduce MTS tetrazolium, while, when dead, they lose this ability. MCF-7 and NCI-H460 cells were cultured in 96-well plates at an initial density of 104 cells/well (MCF-7) or 7xl03 cells/well (NCI-H460) in their respective growth medium. After 24 h incubation to allow cell attachment, the medium was removed and the cells were incubated in the presence or absence of pre-activated compounds at different concentrations. After 48 h incubation time, the MTS reagent was added to each well . The cells were further incubated for a period of time between 30-60 min at 37 °C until colorimetric reaction was developed within the linear range and the absorbance of the samples was measured at 490 nm using a 96-well plate spectrophotometer (Victor 3 plate reader with Wallac 1420 Workstation vs 3.0 software).
A control was used for each tested compound, where cells were incubated with DMEM or RPMI containing the equivalent concentration of DMSO (maximum of 0.4% v/v). Each concentration of tested compounds was done in triplicates. The final concentration of H202 in each well was always < 10 μΜ (non-cytotoxic concentration in MCF-7 and NCI-H460 cell lines, determined with the described assay). The IC50 values were calculated using GraphPad Prism v6.0 (California, USA) as the concentration of the compounds required to cause 50% response compared to cells exposed to controls using a non-linear dose-response regression.
Table 1. Pharmacokinetic values of compound 16 and 23.
Mouse Human Human
Kinetic Mouse metabolic
Plasma Mouse plasma Human metabolic Comp. solubility stability CLjnt
Stability stability stability CLint (μΜ) (mL/min/kg) b c
(mL/min/kg) b'
16
23
% compound recovered after 4 hours pH = 7.4, 37 °C c using human microsomes
Table 2. Evaluation of cell viability of compound 16, methotrexate 12, 23, and aminopterin (31) by MTS assay.3
ICso (nM)
cell line MTX (12) 16 AMT (31) 23
MCF-7 50 ± 24 44 ± 17 7.6 ± 3.4 2.6 ± 1.3
NCI-H460 12.3 ± 4.5 12.0 ± 4.4 7.7 ± 4.0 8.5 ± 4.1 a MCF-7 and NCI-H460 cells were incubated with tested compounds over 48 h, and their viability was determined using the MTS bioreduction assay.
FIGURE 1 shows RP-UPLC-MS UV (λ = 306 nm) chromatograms of the activation of 16 (tR 0.93 min) at a concentration of 125 μΜ in a 1.25mM solution of H202 (10 eq) in DMSO: PBS (1 : 1) . Data points were collected after 0 and 15 min, 1, 4 and 24h by RP-UPLC-MS. Methotrexate (12) elutes at tR 0.62 min (identified with a commercially available reference sample) . The peak at tR 0.18 min corresponds to the solvent peak.
FIGURE 2 shows MCF-7 in vitro cell viability assay incubated with compounds 12 (methotrexate) and prodrug 16. Cells were incubated at increasing concentrations of tested compouns for 48 h before MTS reagent was added . Results are calculated as mean of triplicates (mean ± SD, n = 3) and IC50 is calculated using a dose-response non-linear regression . Pre-activation of tested compounds with H202 was performed 24 h before experiment started as described in the experimental section. FIGURE 3 shows in vitro cell viability study of MCF-7 cells incubated for 48 h with 0.25, 0.062 and 0.015 μΜ concentrations of compounds 12 (methotrexate) and 16 (mean ± SD, n = 3) . Pre-activation of tested compounds with H202 was performed 24 h before experiment started as described in the experimental section. FIGURE 4 shows NCI-H460 in vitro cell viability assay incubated with compounds 12 (methotrexate) and prodrug 16. Cells were incubated at increasing concentrations of tested compouns for 48 h before MTS reagent was added . Results are calculated as mean of triplicates (mean ± SD, n = 3), and IC50 is calculated using a dose-response non-linear regression . Pre-activation of tested compounds with H202 was performed 24 h before experiment started as described in the experimental section.
FIGURE 5 shows in vitro cell viability study of NCI-H460 cells incubated for 48 h with 0.25, 0.062 and 0.015 μΜ concentrations of compounds 12 (methotrexate) and 16 (mean ± SD, n = 3) . Pre-activation of tested compounds with H202 was performed 24 h before experiment started as described in the experimental section. FIGURE 6 shows activation of prodrugs under oxidative conditions (H202) . The activation was run at a test compound concentration of 50 μΜ and H202 of 0.5 mM in a mixture of 30% DMSO in PBS. The experiment was run in triplicates. Values are represented as mean and error bars as SD. Error bars not shown are smaller than the symbol .
FIGURE 7 shows NCI-H460 in vitro cell viability assay incubated with compounds 31 (aminopterin) and prodrug 23. Cells were incubated at increasing concentrations of tested compounds for 48 h before MTS reagent was added . Results are calculated as mean of triplicates (mean ± SD, n = 3), and IC50 is calculated using a dose-response non-linear regression . Pre-activation of tested compounds with H202 was performed 24 h before experiment started as described in the experimental section. FIGURE 8 shows MCF-7 in vitro cell viability assay incubated with compounds 31 (aminopterin) and prodrug 23. Cells were incubated at increasing concentrations of tested compounds for 48 h before MTS reagent was added. Results are calculated as mean of triplicates (me an ± SD, n = 3) and IC50 is calculated using a dose-response non-linear regression . Pre-activation of tested compounds with H202 was performed 24 h before experiment started as described in the experimental section. In vivo animal assay Materials and Methods
Animals: DBA/IJ mice (male, 8-9 weeks) were obtained from Janvier, France. The mice were maintained in the animal house at Redoxis, Medicon Village, Lund, Sweden, where they were acclimatized for approximately one week before initiation of the experiment. All animal experiments were approved by the local animal ethic committee Malmo/Lund, Sweden, approved under the license N165-15.
Induction of disease: collagen induced arthritis (CIA) was induced by intradermal immunization with 100 μg of chicken type-II collagen (CII, Chondrex) in Complete Freund's Adjuvant (CFA, Difco) on day -1 via subcutaneous injection approximately 0.5 cm from the root of the tail. On day 21 a boost injection was administered in the same way with 50 μg CII. One week after the second immunization, onset of disease started to be observed (day 26).
Anti-arthritic effect of test compounds and health evaluation: mice were randomly divided in 5 groups (n = 8 per group) : group I (vehicle), group II (MTX, Sigma Aldrich, 7.0 mg/kg, i.p. ), group III (AMT, Enzo Life Sciences, 6.8 mg/kg, i.p. ), group IV (16, 9.7 mg/kg, i.p.), group V (23, 8.8 mg/kg, i.p. ). Vehicle and compound (2% DMSO in PBS, Life Technologies, injection volume 370 μί) were dosed daily intraperitoneally for 14 days, starting at onset of disease (day 27). Disease was evaluated three times per week in a blinded fashion, starting at day 18 until the end of the experiment (day 40). The reduction of swelling in the limbs was used as macroscopic score. A macroscopic scoring system of the four limbs ranging from 0 to 15 (1 point for each swollen or red toe) was used, meaning a maximal score of 60 per mice. For ethical reasons and restrictions, mice with score exceeding 45 were removed from the experiment. The general health of mice was evaluated three times per week after disease induction. As an indicator of general health, animal body weight was used.
FIGURE 9 shows suppression of CIA development in mice after treatment with methotrexate (MTX, 12), aminopterin (AMT, 31) and prodrugs 16 and 23 (n = 8 per group). DBA/IJ mice were given the indicated amounts of compound daily and disease progression vas evaluated three times per week starting on day 27. One animal in vehicle group and one animal in 23 group were sacrificed pre-termination due to high score. The AMT group was removed pre- termination due to a decline in health. Data represents mean values of arthritic score ± SEM. * represents a p-value <0.05 and ** represents a p-value <0.01 for comparison between MTX and vehicle, while† represents a p-value <0.05 for comparison between 16 and vehicle. FIGURE 10 shows the general health of mice was evaluated three times per week during CIA as the average body weight in groups of animals (n = 8) tested with vehicle, MTX, AMT, 16, and 23. One animal in vehicle group and one animal in 23 group were sacrificed pre- termination due to high score. The AMT group was removed pre-termination due to a decline in health. Data represents mean values of arthritic score ± SEM. * represents a p-value <0.05 for comparison between AMT and vehicle.
ASPECTS OF THE INVENTION
ASPECT 1
A compound having the formula I
Figure imgf000074_0001
I wherein Rl and R2 are selected from the group consisting of hydrogen and a moiety of the formula II, III or IV
Figure imgf000074_0002
R3 is selected from the group consisting of hydrogen, Ci_5alkyl, C2-6alkenyl, C2-4alkynyl, C5. i2aryl, C4-n heteroaryl and a moiety of the formula II, III or IV above,
R4 and R5 are independently selected from the group consisting of OH, 0-Ci-6alkyl, 0-C2. 5alkenyl, 0-C6-i2aryl, 0-C4-uheteroaryl and a moiety of the formula V or VI;
Figure imgf000075_0001
R6 and R7 are independently selected from the group consisting of hydrogen, CF3, Ci-6alkyl, C2-6alkenyl, C6-i2aryl, and C4-uheteroaryl;
R8 and R9 are independently hydroxyl groups or R8 and R9 form, together with the intervening B and O atoms, a pinacol, catechol, diethanolamine, N-methyldiethanolamine or MIDA boronate group;
W and Q are independently C or N; wherein each of X, Y and Z are selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF3, Ci-6alkyl, Ci-6alkoxy, C2-6alkenyl, C2-6alkenyloxy, C6-i2aryl, C4. uheteroaryl; wherein each of said Ci-6alkyl, C2-6alkenyl, C6-i2aryl, C4-uheteroaryl may be substituted by one or more substituents selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF3, and Ci_5alkyl; and each of a, b and c are integers in the range 0-4;
X' and Y' are independently S or O, and R' and R" are independently selected from hydrogen, Ci-6alkyl, C2-6alkenyl, aryl and Ci-6alkyl-aryl; wherein, if each of Rl, R2 and R3 are different from a moiety selected from a moiety of the formula II, III and IV, then at least one of R4 and R5 is a moiety of the formula V; as well as pharmaceutically acceptable salts, solvates, and stereoisomers thereof.
ASPECT 2
The compound according to aspect 1, wherein W and Q are both C. ASPECT 3 The compound according to aspect 1 or 2, wherein R6 and R7 are independently selected from the group consisting of hydrogen and Ci-6alkyl, preferably selected from the group consisting of hydrogen and Ci.4alkyl, preferably selected from the group consisting of hydrogen and methyl, preferably wherein R6 and R7 are both hydrogen.
ASPECT 4 The compound according to any one of the preceding aspects, wherein R8 and R9 are independently hydroxyl or R8 and R9 form, together with the intervening B and O atoms, a pinacol or catechol group, preferably wherein R8 and R9 are independently hydroxyl or R8 and R9 form, together with the intervening B and O atoms, a pinacol group, preferably wherein R8 and R9 are both hydroxyl groups. ASPECT 5
The compound according to any one of the preceding aspects, wherein each of X, Y and Z are selected from the group consisting of halogen, cyano, hydroxyl, CF3, and Ci-5alkyl ; and each of a, b and c are 0, 1 or 2.
ASPECT 6 The compound according to any one of the preceding aspects, wherein each of X, Y and Z are selected from the group consisting of halogen, cyano, hydroxyl, and Ci-6alkyl ; preferably wherein each of X, Y and Z are selected from the group consisting of halogen and Ci-4alkyl ; preferably wherein each of X, Y and Z are selected from the group consisting of fluoro and methyl ; and each of a, b and c are 0 or 1. ASPECT 7
The compound according to any one of the preceding aspects, wherein Y' is S. ASPECT 8
The compound according to any one of the preceding aspects, wherein X' is O. ASPECT 9
The compound according to any one of the preceding aspects, wherein R2 is selected from the group consisting of
Figure imgf000077_0001
in which X, Y, Z, a, b and c are as defined in any one of aspects 1-8;
Rl is hydrogen;
R3 is selected from the group consisting of hydrogen and Ci-6alkyl, preferably selected from the group consisting of hydrogen and Ci-4alkyl, preferably wherein said R3 is methyl; and R4 and R5 are selected from the group consisting of OH and 0-Ci-5alkyl, preferably selected from the group consisting of OH and 0-Ci_4alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy. ASPECT 10
The compound according to any one of aspects 1-8, wherein R3 is selected from the group consisting of
Figure imgf000077_0002
in which X, Y, Z, a, b and c are as defined in any one of aspects 1-8;
Rl and R2 are hydrogen; and
R4 and R5 are selected from the group consisting of OH and 0-Ci-5alkyl, preferably selected from the group consisting of OH and 0-Ci-4alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy.
ASPECT 11
The compound according to any one of aspects 1-8, wherein R4 and/or R5 is a moiety of the formula
Figure imgf000078_0001
in which Z and c are as defined in any one of aspects 1-8;
Rl and R2 are hydrogen; and
R3 is selected from the group consisting of hydrogen and Ci-6alkyl, preferably selected from the group consisting of hydrogen and Ci-4alkyl, preferably wherein said R3 is methyl.
ASPECT 12 The compound according to any one of the preceding aspects selected from the group consisting of
(S)-(4-((((2-amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)
phenyl)boronic acid (compound 9)
(S)-(4-((((2-amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)-2- methylphenyl)boronic acid (compound 10) (S)-(4-((((2-amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)-2- fluorophenyl)boronic acid (compound 11) Bis(4-methoxybenzyl) (4-(((2-amino-4-((((4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)benzyl)oxy)carbonyl)amino)pteridin-6-yl)methyl)(methyl)amino)benzoyl)-L-glutamate (compound 14)
(S)-(4-((((2-amino-6-(((4-((l,5-bis((4-methoxybenzyl)oxy)-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (compound 15) (4-(((2-amino-4-((((4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl)(methyl)amino)benzoyl)-L-glutamic acid (compound 16)
(S)-(4-((((2,4-diaminopteridin-6-yl)methyl)(4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)amino)methyl)phenyl)boronic acid (compound 22)
(4-((4-boronobenzyl)((2,4-diaminopteridin-6-yl)methyl)amino)benzoyl)-L-glutamic acid (compound 23),
(S)-(4-((((2-amino-6-(((4-((l,5-di-tert-butoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (compound 30)
(4-((((2-amino-6-(((4-((l,5-bis(allyloxy)-l,5-dioxopentan-2
yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (compound 33) .
ASPECT 13
A method for the preparation of a compound of the formula I, comprising the steps: a) Providing methotrexate (MTX) of the formula 12 or aminopterin of the formula 31 or any protected versions of them
Figure imgf000080_0001
Figure imgf000080_0002
Wherein R4, R5, R6, R7, R8, R9, R', R", W, Q, X, X', Y, Y' Z, a, b, c are as defined above,
RIO and Rl l is a leaving group LG; and c) Reacting optionally protected MTX(12) or optionally protected aminopterin (31) with a compound of formula Ila, Ilia, IVa, or VI to obtain a compound of formula I according to the invention;
d) Optionally performing a deprotection step.
ASPECT 14
A pharmaceutical composition comprising a compound according to any one of aspects 1-12 optionally in combination with one or more excipients. ASPECT 15
A compound according to any one of aspects 1-12 as a prodrug for the treatment of inflammatory diseases or cancer, such as wherein said inflammatory disease is selected from the group consisting of rheumatoid arthritis (RA), juvenile dermatomyositis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, atopic dermatitis, eczema Crohn's disease, colitis ulcerosa, multiple sclerosis, and Amyotropic Lateral Sclerosis (ALS).

Claims

A compound having the formula I
Figure imgf000082_0001
wherein Rl and R2 are independently selected from the group consisting of hydrogen and moiety of the formula II, III, IV, VII, VIII, IX, X, XI, or XII
Figure imgf000082_0002
Figure imgf000082_0003
IX
Figure imgf000083_0001
R3 is selected from the group consisting of hydrogen,
Figure imgf000083_0002
C2-6alkenyl, C2-4alkynyl, C6- i2aryl, C4-u heteroaryl and a moiety of the formula II, III, IV, VII, VIII, IX, X, XI, or XII above; R4 and R5 are independently selected from the group consisting of OH, 0-Ci_5alkyl, 0-C2. 5alkenyl, 0-C5-i2aryl, 0-C4-uheteroaryl and a moiety of the formula V, VI, XIII, XIV, XV, XVI, or XVII;
Figure imgf000083_0003
Figure imgf000084_0001
R6, R7 and R12 are independently selected from the group consisting of hydrogen, CF3, Ci_ 6alkyl, C2-6alkenyl, C5-i2aryl, and C4-uheteroaryl ;
R8 and R9 are independently hydroxyl groups or R8 and R9 form, together with the intervening B and O atoms, a pinacol, catechol, diethanolamine, N-methyldiethanolamine or N-methyliminodiacetic acid (MIDA) boronate group;
W and Q are independently C or N ; wherein each of X, Y and Z are selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF3, Ci-6alkyl, Ci-6alkoxy, C2-6alkenyl, C2-6alkenyloxy, C6-i2aryl, C4. nheteroaryl ; wherein each of said Ci_5alkyl, C2.5alkenyl, C5_i2aryl, C4.nheteroaryl may be substituted by one or more substituents selected from the group consisting of halogen, amino, nitro, cyano, hydroxyl, CF3, and Ci-6alkyl ; and each of a, b and c are integers in the range 0-4;
X' and Y' are independently S or O, and R', R", R'" and R"" are independently selected from hydrogen, Ci-6alkyl, C2-6alkenyl, C6-i2aryl, C4-uheteroaryl, and Ci-5alkyl-C5-i2aryl ; wherein, if each of Rl, R2 and R3 are different from a moiety selected from a moiety of the formula II, III, IV, VII, VIII, IX, X, XI, or XII then at least one of R4 and R5 is a moiety of the formula V, XIII, XIV, XV, XVI, or XVII; as well as pharmaceutically acceptable salts, solvates, and stereoisomers thereof.
2. The compound according to claim 1, wherein Rl and R2 are independently selected from the group consisting of hydrogen and a moiety of the formula II, III, or IV.
3. The compound according to claim 1 or 2, wherein R3 is selected from the group consisting of hydrogen, Ci-5alkyl, C2-6alkenyl, C2-4alkynyl, C5-i2aryl, C4-uheteroaryl and a moiety of the formula II, III, or IV.
4. The compound according to any one of the preceding claims, wherein R4 and R5 are independently selected from the group consisting of OH, 0-Ci-6alkyl, 0-C2-6alkenyl, 0-C6- i2aryl, 0-C4-uheteroaryl and a moiety of the formula V, or VI.
5. The compound according to any one of the preceding claims, wherein Rl and R2 are independently selected from the group consisting of hydrogen and a moiety of the formula II, III, or IV; R3 is selected from the group consisting of hydrogen, Ci-6alkyl, C2-6alkenyl, C2.4alkynyl, C6- i2aryl, C4-n heteroaryl and a moiety of the formula II, III, or IV;
R4 and R5 are independently selected from the group consisting of OH, 0-Ci-6alkyl, 0-C2. 5alkenyl, 0-C5_i2aryl, 0-C4_nheteroaryl and a moiety of the formula V, or VI; and wherein, if each of Rl, R2 and R3 are different from a moiety selected from a moiety of the formula II, III, and IV, then at least one of R4 and R5 is a moiety of the formula V.
6. The compound according to claim 1, wherein W and Q are both C.
7. The compound according to any one of the preceding claims, wherein R6 and R7 are independently selected from the group consisting of hydrogen and Ci-6alkyl, preferably selected from the group consisting of hydrogen and Ci_4alkyl, preferably selected from the group consisting of hydrogen and methyl, preferably wherein R6 and R7 are both hydrogen.
8. The compound according to any one of the preceding claims, wherein R8 and R9 are independently hydroxyl or R8 and R9 form, together with the intervening B and O atoms, a pinacol or catechol group, preferably wherein R8 and R9 are independently hydroxyl or R8 and R9 form, together with the intervening B and O atoms, a pinacol group, preferably wherein R8 and R9 are both hydroxyl groups.
9. The compound according to any one of the preceding claims, wherein each of X, Y and Z are selected from the group consisting of halogen, cyano, hydroxyl, CF3, and Ci-6alkyl ; and each of a, b and c are 0, 1 or 2.
10. The compound according to any one of the preceding claims, wherein each of X, Y and Z are selected from the group consisting of halogen, cyano, hydroxyl, and Chalky! ; preferably wherein each of X, Y and Z are selected from the group consisting of halogen and Ci-4alkyl ; preferably wherein each of X, Y and Z are selected from the group consisting of fluoro and methyl; and each of a, b and c are 0 or 1.
11. The compound according to any one of the preceding claims, wherein Y' is S.
12. The compound according to any one of the preceding claims, wherein X' is O.
13. The compound according to any one of the preceding claims, wherein R2 is selected from the group consisting of
Figure imgf000086_0001
in which X, Y, Z, a, b and c are as defined in any one of claims 1-12;
Rl is hydrogen;
R3 is selected from the group consisting of hydrogen and Ci-6alkyl, preferably selected from the group consisting of hydrogen and Ci-4alkyl, preferably wherein said R3 is methyl ; and
R4 and R5 are selected from the group consisting of OH and 0-Ci-6alkyl, preferably selected from the group consisting of OH and 0-Ci-4alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy.
14. The compound according to any one of claims 1-12, wherein R3 is selected from the group consisting of
Figure imgf000087_0001
in which X, Y, Z, a, b and c are as defined in any one of claims 1-12;
Rl and R2 are hydrogen; and
R4 and R5 are selected from the group consisting of OH and 0-Ci-5alkyl, preferably selected from the group consisting of OH and 0-Ci-4alkyl, preferably wherein R4 and R5 are both methoxy or hydroxy.
15. The compound according to any one of claims 1-12, wherein R4 and/or R5 is a moiety of the formula
Figure imgf000087_0002
in which Z and c are as defined in any one of claims 1-12;
Rl and R2 are hydrogen; and
R3 is selected from the group consisting of hydrogen and Ci-6alkyl, preferably selected from the group consisting of hydrogen and Ci-4alkyl, preferably wherein said R3 is methyl.
16. The compound according to any one of the preceding claims selected from the group consisting of
(S)-(4-((((2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)
phenyl)boronic acid (compound 9)
(S)-(4-((((2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)-2- methylphenyl)boronic acid (compound 10) (S)-(4-((((2-Amino-6-(((4-((l,5-dimethox
yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)methyl)-2- fluorophenyl)boronic acid (compound 11) Bis(4-methoxybenzyl) (4-(((2-amino-4-((((4-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)benzyl)oxy)carbonyl)amino)pteridin-6-yl)methyl)(methyl)amino)benzoyl)-i-glutamate (compound 14)
(S)-(4-((((2-Amino-6-(((4-((l,5-bis((4-methoxybenzyl)oxy)- l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (compound 15)
(4-(((2-Amino-4-((((4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl)(methyl)amino)benzoyl)-i-glutamic acid (compound 16)
(S)-(4-((((2,4-Siaminopteridin-6-yl)methyl)(4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)amino)methyl)phenyl)boronic acid (compound 22)
(4-((4-Boronobenzyl)((2,4-diaminopteridin-6-yl)methyl)amino)benzoyl)-i-glutamic acid (compound 23),
(S)-(4-((((2-Amino-6-(((4-((l,5-di-tert-butoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (compound 30)
(4-((((2-Amino-6-(((4-((l,5-bis(allyloxy)-l,5-dioxopentan-2
yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4- yl)carbamoyl)oxy)methyl)phenyl)boronic acid (compound 33)
(S)-(4-((3-(2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)ureido)methyl)phenyl)boronic acid (compound 35)
(S)-5-((4-Boronobenzyl)oxy)-4-(4-(((2,4-diaminopteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxopentanoic acid (compound 37)
(S)-5-((4-Boronobenzyl)oxy)-2-(4-(((2,4-diaminopteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxopentanoic acid (compound 38) (S)-(4-(((5-((4-Boronobenzyl)oxy)-2-(4-(((2,4-diaminopteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxopentanoyl)oxy)methyl)phenyl)boronic acid (compound 39)
(S)-(4-(((2-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)amino)methyl)phenyl) boronic acid (compound 40)
(S)-(4-(((4-Amino-6-(((4-((l,5-dimethoxy-l,5-dioxopentan-2-yl)carbamoyl)- phenyl)(methyl)amino)methyl)pteridin-2-yl)amino)methyl)phenyl)boronic acid (compound 41) (S)-((((6-(((4-((l,5-Dimethoxy-l,5-dioxopentan-2-yl)carbamoyl)phenyl)-
(methyl)amino)methyl)pteridine-2,4-diyl)bis(azanediyl))bis(methylene))bis(4, l- phenylene))diboronic acid (compound 42)
(5)-((((((6-(((4-((l,5-Dimethoxy-l,5-dioxopentan-2-yl)carbamoyl)phenyl)- (methyl)amino)methyl)pteridine-2,4-diyl)bis(azanediyl))bis(carbonyl))bis(oxy))- bis(methylene))bis(4,l-phenylene))diboronic acid (compound 43)
(2-(4-(((2-Amino-4-((((4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxo-5-(2-oxothiazolidin-3-yl)pentanoic acid (compound 44)
4-(4-(((2-Amino-4-((((4-boronobenzyl)oxy)carbonyl)amino)pteridin-6- yl)methyl)(methyl)amino)benzamido)-5-oxo-5-(2-oxothiazolidin-3-yl)pentanoic acid (compound 45)
(4-((((2-Amino-6-(((4-(( l,5-dioxo-l,5-bis(2-oxothiazolidin-3-yl)pentan-2- yl)carbamoyl)phenyl)(methyl)amino)methyl)pteridin-4-yl)carbamoyl)oxy)- methyl)phenyl)boronic acid (compound 46) 2-(4-((4-Boronobenzyl)((2,4-diaminopteridin-6-yl)methyl)amino)benzamido)-5-oxo-5-(2- oxothiazolidin-3-yl)pentanoic acid (compound 47)
4-(4-((4-Boronobenzyl)((2,4-diaminopteridin-6-yl)methyl)amino)benzamido)-5-oxo-5-(2- oxothiazolidin-3-yl)pentanoic acid (compound 48) (4-((((2,4-Diaminopteridin-6-yl)methyl)(4-((l,5-dioxo-l,5-bis(2-oxothiazolidin-3-y 2-yl)carbamoyl)phenyl)amino)methyl)phenyl)boronic acid (compound 49) .
17. A method for the preparation of a compound of the formula I, comprising the steps: a) Providing methotrexate (MTX) of the formula 12 or aminopterin of the formula 31 any protected versions of them
Figure imgf000090_0001
Figure imgf000090_0002
Figure imgf000091_0001
Wherein R4, R5, R6, R7, R8, R9, R12, R', R", R'", R"", W, Q, X, X', Y, Y' Z, a, b, c are as defined above,
RIO and Rl l is a leaving group LG; and c) Reacting optionally protected MTX (12) or optionally protected aminopterin (31) with a compound of formula Ila, Ilia, IVa, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIA to obtain a compound of formula I according to the invention;
d) Optionally performing a deprotection step;
e) Optionally reacting the compound obtained in step c) or d), as appropriate, with a compound of the formula Ila, Ilia, IVa, Via, Vila, Villa, IXa, Xa, XIa, Xlla, XVIIIa, XlXa, XXa, XXIa, XXIIa, or XXIIIa, followed by an optional deprotection step to obtain a compound of formula I according to the invention.
18. A pharmaceutical composition comprising a compound according to any one of claims 1-16 optionally in combination with one or more excipients.
19. A compound according to any one of claims 1-16 for the treatment of inflammatory diseases or cancer.
20. The compound according to claim 19, wherein said inflammatory diseases are selected from the group consisting of rheumatoid arthritis (RA), juvenile dermatomyositis, juvenile rheumatoid arthritis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, atopic dermatitis, eczema, Crohn's disease, uveitis associated with juvenile idiopathic arthritis or ulcerative colitis, colitis ulcerosa, multiple sclerosis, Amyotropic Lateral Sclerosis (ALS), non-infectious ocular inflammation, vasculitis, systemic lupus erythematosus, and eosinophilic fasciitis.
21. The compound according to claim 19, wherein said cancer is selected from the group consisting of acute lymphocytic leukemia, meningeal leukemia, myeloproliferative neoplasm, breast cancer, squamous cell carcinoma, lymphosarcoma, osteosarcoma, advanced mycosis fungoides (cutaneous T cell lymphoma), small cell types lung cancer, non-small cell lung cancer, and non-Hodgkin's lymphoma.
22. A method for the treatment of a patient suffering from inflammatory diseases or cancer, said method comprising administering a compound according to any one of claims 1- 16 as a prodrug for the treatment of inflammatory diseases or cancer.
23. The method according to claim 22, wherein said inflammatory disease is selected from the group consisting of rheumatoid arthritis (RA), juvenile dermatomyositis, juvenile rheumatoid arthritis, psoriasis, psoriatic arthritis, lupus, sarcoidosis, atopic dermatitis, eczema, Crohn's disease, uveitis associated with juvenile idiopathic arthritis or ulcerative colitis, colitis ulcerosa, multiple sclerosis, Amyotropic Lateral Sclerosis (ALS), non-infectious ocular inflammation, vasculitis, systemic lupus erythematosus, and eosinophilic fasciitis.
24. The method according to claim 22, wherein said cancer is selected from the group consisting of acute lymphocytic leukemia, meningeal leukemia, myeloproliferative neoplasm, breast cancer, squamous cell carcinoma, lymphosarcoma, osteosarcoma, advanced mycosis fungoides (cutaneous T cell lymphoma), small cell types lung cancer, non-small cell lung cancer, and non-Hodgkin's lymphoma.
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