WO2017111219A1 - Method for qualitative and quantitative analysis of monosaccharides and peptides using cucurbituril[7] - Google Patents
Method for qualitative and quantitative analysis of monosaccharides and peptides using cucurbituril[7] Download PDFInfo
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- WO2017111219A1 WO2017111219A1 PCT/KR2016/005186 KR2016005186W WO2017111219A1 WO 2017111219 A1 WO2017111219 A1 WO 2017111219A1 KR 2016005186 W KR2016005186 W KR 2016005186W WO 2017111219 A1 WO2017111219 A1 WO 2017111219A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H3/00—Compounds containing only hydrogen atoms and saccharide radicals having only carbon, hydrogen, and oxygen atoms
- C07H3/02—Monosaccharides
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/62—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating the ionisation of gases, e.g. aerosols; by investigating electric discharges, e.g. emission of cathode
- G01N27/622—Ion mobility spectrometry
- G01N27/623—Ion mobility spectrometry combined with mass spectrometry
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
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- H—ELECTRICITY
- H01—ELECTRIC ELEMENTS
- H01J—ELECTRIC DISCHARGE TUBES OR DISCHARGE LAMPS
- H01J49/00—Particle spectrometers or separator tubes
- H01J49/26—Mass spectrometers or separator tubes
Definitions
- the present invention relates to a qualitative and quantitative analysis method of monosaccharides using cucurbituril [7], and in detail, after forming a cucurbituril [7] -monosaccharide complex ion to which ammonia ions are bound using an electrospray ionization method, double mass spectrometry Tandem mass spectrometry relates to a method for qualitative and quantitative analysis of monosaccharides in a gas phase by identifying cleavage patterns of complex ions according to gas phase owner-guest interactions.
- the present invention also relates to a method for qualitative and quantitative analysis of peptides using cucurbituril [7].
- the most widely used sugar analysis method is a method using an oxidation-reduction reaction between enzymes and sugars (Wang, J. Chem . Rev. 2008 , 108 , 814).
- this method has a disadvantage in that the hydrogen ion concentration index or the temperature of the enzyme-containing solution must be adjusted to be always in the proper range in order to obtain high accuracy and precision.
- MS mass spectrometry
- proteins are first digested by enzymes and then analyzed by electrospray ionization MS (ESI-MS) or substrate-assisted laser desorption ionization MS (MALDI-MS) (Non Patent Literature 1).
- ESI-MS electrospray ionization MS
- MALDI-MS substrate-assisted laser desorption ionization MS
- Non Patent Literature 2 a plurality of peptides generated from the digestion provide abundant information about the protein primary structure (ie amino acid sequence).
- various peptides compete for protons during the ionization process, those with low proton affinity show low ionization efficiency, which often makes MS analysis difficult and at the same time reduces sequence coverage (Non Patent Literature 2).
- Non-Patent Document 2 derivatization
- Non-Patent Document 3 instrumental modification
- Non-Patent Document 6 The cucurbituril of [7] to form the N- terminal phenylalanine (Phe) residue and strong complex of peptides and proteins in solution (K a ⁇ 10 6 -10 7 M -1) ( Non-Patent Document 6), which phenylalanine This is because the hydrophobic side chain of is well contained in the cavity of cucurbituril [7], and the N-terminal ammonium group has an effective ion-dipole interaction with carbonyl oxygen of cucurbituril [7] (see Fig. 1) (Non Patent Literature 8) .
- Non-Patent Document 1 Steen, H .; Mann, M. Nat. Rev. Mol . Cell Biol . 2004 , 5 , 699-711.
- Non-Patent Document 2 Mirzaei, H .; Regnier, F. Anal. Chem. 2006 , 78 , 4175-4183.
- Non-Patent Document 3 Heemskerk, AAM; Busnel, J.-M .; Schoenmaker, B .; Derks, RJE; Klychnikov, O .; Hensbergen, PJ; Deelder, AM; Mayboroda, OA Anal. Chem. 2012 , 84 , 4552-4559.
- Non-Patent Document 4 Kim, K .; Selvapalam, N .; Ko, YH; Park, KM; Kim, D .; Kim, J. Chem. Soc. Rev. 2007 , 36 , 267-279.
- Non-Patent Document 5 Assaf, KI; Nau, WM Chem . Soc . Rev. 2015 , 44 , 394-418.
- Non-Patent Document 6 Lee, HH; Choi, TS; Lee, SJC; Lee, JW; Park, J .; Ko, YH; Kim, WJ; Kim, K .; Kim, HI Angew . Chem . Int . Ed. 2014 , 53 , 7461-7465.
- Non-Patent Document 7 Lee, JW; Heo, SW; Lee, SJ; Ko, JY; Kim, H .; Kim, HI J. Am. Soc. Mass. Spectrom. 2013 , 24 , 21-29.
- Non-Patent Document 8 Chinai, JM; Taylor, AB; Ryno, LM; Hargreaves, ND; Morris, CA; Hart, PJ; Urbach, AR J. Am. Chem . Soc . 2011 , 133 , 8810-8813.
- the present invention has been made to solve the above-described problems, in the present invention, after forming a cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound using an electrospray ionization method, a double mass spectrometry It is to provide a method of qualitative and quantitative analysis of monosaccharides by checking the cleavage pattern of each complex ion through.
- cooker bituril [7] in the analysis of peptide samples using various mass spectrometry-based methods, the addition of cooker bituril [7] can be added to cooker bituril [7], which can dramatically improve the analytical ability of the peptide to be analyzed. To provide a method for qualitative and quantitative analysis of peptides.
- the present invention to solve the above problems,
- the monosaccharides contained in the monosaccharide solution are galactose (Galactose, Gal), glucose (Glucose, Glc), fructose (Fructose, Fru), mannose (Mannose, Man), allose (Allose) , All), Altrose (Alt), Gulose (Gulose, Gul), Taloose (Talose, Tal), Psicose (Psi), Sorboose (Sorbose, Sor), Takatose (Tagatose) , Tag), and Idoose (Idose, Ido) may be selected from the group consisting of.
- the ammonium salt may be at least one selected from the group consisting of ammonium acetate, ammonium chloride, ammonium carbonate, ammonium hydroxide.
- the formation of the cucurbituril [7] -monosaccharide complex ion to which the ammonium ion is bound in step (b) is formed in the gas phase of the cucurbituril [7] and the monosaccharide by electrospray ionization of the mixture. It may be formed by owner-guest interaction.
- the concentration ratio of the monosaccharide solution, cucurbituril [7] and the ammonium salt of step (a) may be 1: 1.5: 3 to 1: 6: 12.
- the qualitative and quantitative analysis of the monosaccharides is based on the mass / charge (m / z) of fragment ions generated from the cucurbituril [7] -monosaccharide complex ion to which the ammonium ion is bound. Analyze the ratio of the amount of ions according to the ratio of).
- the monosaccharide solution of step (a) may be a mixture of the monosaccharide selected as the analysis target monosaccharides and the internal standard.
- the quantitative analysis of the monosaccharides may be analyzed through a calibration curve derived through an internal standard method.
- the monosaccharide selected as the internal standard may be selected from the group consisting of allose (Allose, All), Altrose (Altrose, Alt), gulose (Gulose, Gul), Taloose (Talose, Tal) have.
- the aqueous monosaccharide solution of step (a) may be a mixture of a plurality of different analysis target monosaccharides.
- the quantitative analysis of the monosaccharides may be analyzed through a calibration curve derived through a standard addition method.
- the complex may be formed by hydrophobic interaction and ion-dipole interaction between N-terminal phenylalanine residue of the peptide and cucurbituril [7].
- the peptide may be a peptide digested by pepsin.
- the peptide may be selected from the group consisting of insulin, B-chain of insulin, ubiquitin, myoglobin and mixtures thereof.
- the mass spectrometry is electrospray ionization mass spectrometry (ESI-MS), substrate-assisted laser desorption ionization mass spectrometry (MALDI-MS), ion mobility mass spectrometry (IM-MS), Or it may be based on tandem mass spectrometry based on collision-induced dissociation.
- ESI-MS electrospray ionization mass spectrometry
- MALDI-MS substrate-assisted laser desorption ionization mass spectrometry
- IM-MS ion mobility mass spectrometry
- the mixing ratio of the peptide solution and cucurbituril [7] in step a) may be 10 parts by weight to 1000 parts by weight of the cucurbituril [7] based on 100 parts by weight of the peptide solution.
- the qualitative and quantitative analysis method of monosaccharides using the cucurbituril [7] according to the present invention can not only easily and quickly distinguish monosaccharides, but also have the effect of enabling the relative and absolute quantification of monosaccharides, and thus the analysis time and The cost can be drastically reduced.
- 1 is a view schematically showing the qualitative and quantitative analysis of monosaccharides according to the present invention.
- ITC isothermal calorimetry calorimetry
- FIG. 3 is a diagram showing an MS spectrum of a solution containing 20 ⁇ M of monosaccharides, 50 ⁇ M of cucurbituril [7] and 100 ⁇ M of ammonium acetate.
- FIG. 4 is a graph showing the ionic content ratio of fragment ions according to MS 2 spectrum and normalized collision energy (CE Norm ) of a cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound.
- FIG. 9 is a diagram showing the structure and ion mobility spectrum distribution of the cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound.
- Fig. 10 shows the geometry of the hydroxyl group (—OH) bonded to C6 of ⁇ and ⁇ monosaccharides in the cavity of cucurbituril [7].
- 11A to 11D show hydroxyl groups (-OH) bound to C1 (a), C2 (b), C3 (c) and C4 (d) of ⁇ - and ⁇ -type monosaccharides in the cavity of cucurbituril [7].
- Fig. 12 shows the geometry of the hydroxyl group (-OH) bonded to C1, C2, C3, C4, and C6 when the hydroxyl group bonded to C2 of ⁇ type Glc and Man is similarly arranged in the cavity of cucurbituril [7]. The figure shown.
- FIG. 13 is a cucurbituril conjugated with ammonium ions formed using allose, all, altrose, alt, gulose, gulose and talos, as internal standards.
- FIG. 14 is a schematic diagram of the structure of cucurbituril [7] and a diagram in which cucurbituril [7] forms a complex with N-terminal peptide residues of peptides and proteins in solution.
- 15A to 15D are diagrams showing the addition of cookerbituril [7] to peptides digested with pepsin and the ESI-MS spectrum when not.
- 16a to 16d show the addition of cucurbituril [7] to peptides digested with pepsin and low-energy collision-induced dissociation spectra without.
- 17a to 17d show the addition of cucurbituril [7] to peptides digested with pepsin and MALDI-MS spectra without.
- Fig. 18 is a schematic diagram showing the structure of a cucurbituril [7] peptide complex using IM-MS.
- FIG. 19 is a schematic diagram illustrating the fragmentation pathway of ubiquitin4-15 peptide ions complexed with cucurbituril [7] and not.
- monosaccharides have a problem in that qualitative and quantitative analysis is difficult due to the same mass and very similar structure, and conventional qualitative and quantitative analysis techniques of monosaccharides have many problems such as derivatization or energy-degrading MS (ERMS) of monosaccharides.
- ERMS energy-degrading MS
- Tandem Mass Spectrometry (MS 2 )
- MS 2 Tandem Mass Spectrometry
- 1 is a view schematically showing the qualitative and quantitative analysis of monosaccharides according to the present invention.
- the qualitative and quantitative analysis of monosaccharides comprises the steps of: (a) mixing a cucurbituril [7] and an ammonium salt in a monosaccharide solution; (b) ionizing the mixture by electrospray ionization to form ammonium ions-linked cucurbituril [7] -monosaccharide complex ions; And (c) qualitatively and quantitatively analyzing the cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound by using dual mass spectrometry.
- the monosaccharide is not particularly limited as long as it is known in the art, but preferably galactose (Galactose, Gal), glucose (Glucose, Glc), fructose (Fructose, Fru), mannose (Mannose, Man), allo Allose, All, Altrose, Alt, Gulose, Gul, Talos, Tal, Psicose, Psi, Sorbose, Sor, Takato It may be selected from the group consisting of (Tagatose, Tag), Idoose (Idose, Ido).
- ammonium salt is not limited thereto as long as it includes a salt containing ammonium ions, preferably may be one or more selected from the group consisting of ammonium acetate, ammonium chloride, ammonium carbonate, ammonium hydroxide.
- step (b) the cucurbituril [7] -monosaccharide complex ion to which the ammonium ion is bound in step (b) is separated by the gas phase owner-guest interaction between the cucurbituril and the monosaccharide while the solvent contained in the monosaccharide solution is evaporated by electrospray ionization.
- Ammonium ions, cookerbituryl [7] and monosaccharides form complex ions.
- the concentration ratio of the monosaccharide aqueous solution, cucurbituril [7] and the ammonium salt of step (a) is preferably 1: 1.5: 3 to 1: 6: 12.
- the concentration ratio is less than the lower limit, there are many monosaccharides that do not bind, which may cause a problem in quantification.
- the concentration ratio exceeds the upper limit, there may be a problem in measuring complex ions due to the increase in the number of cucurbituril ions to which the monosaccharide is not bound.
- the qualitative and quantitative analysis of the monosaccharide according to the present invention is based on the ratio of the mass / charge (m / z) of the fragment ions (fragment ions) generated from the cucurbituril [7] -monosaccharide complex ion to which the ammonium ion is bound Analyzing the ratio; may be performed through.
- the ratio of the mass / charge (m / z) of the fragment ions generated from the cucurbituril [7] -monosaccharide complex ions to which ammonium ions are formed per monosaccharide is bound.
- the monosaccharide solution of step (a) is mixed with the analyte monosaccharide and a monosaccharide selected as an internal standard, and is described in the following Examples.
- Analytical monosaccharides can be quantified through the test curve derived from.
- the monosaccharide selected as the internal standard is hardly present in the body, and the monosaccharide is known to know the absolute amount, but is not necessarily limited thereto.
- Allose, All, Altrose, Alt, and Gulose ( Gulose, Gul), Talose (Talose, Tal) can be selected from the group consisting of.
- the present invention can be quantified for each monosaccharide when the analyte monosaccharide is mixed, wherein the aqueous monosaccharide solution of step (a) is mixed with a plurality of different analyte monosaccharides, which will be described in the following examples.
- the assay curve derived through the standard addition method can be used to quantify the analyte monosaccharides.
- the present invention provides a method for improving analytical performance of peptides that are hardly detected on mass spectrometry through selective non-covalent interactions between a cucurbituril [7] and a peptide having an N-terminal phenylalanine residue.
- the method according to the present invention which promotes signal enrichment using such master-guest chemistry, is applicable to both ESI-MS and MALDI-MS, and has a particularly excellent effect on protein analysis including pepsin digestion process. This is because pepsin preferentially cleaves non-polar sites containing phenylalanine.
- this signal potentiating effect of cucurbituril [7] is used to utilize insulin B-chain (InsB; 3.4 kDa), insulin (Ins; 5.8 kDa), ubiquitin (Ubq; 8.6 kDa), and myoglobin (Myb; 17.0 kDa). Analysis was performed. Furthermore, according to the present invention, the sequence coverage of peptides associated with cucurbituril [7] was improved for double mass spectrometry experiments. Accordingly, in the present invention, signal enhancement and improved sequence coverage by cucurbituril [7] were analyzed based on charge stabilization properties, and thus an effective approach in analyzing them using mass spectrometry by targeting and capturing specific residues of peptides. It suggested that a method could be provided, and also proposed a mechanism for a novel fragmentation pathway of polypeptides induced by the host molecule.
- the peptide-cookerbituryl [7] complex may be formed by hydrophobic interaction and ion-dipole interaction between the N-terminal phenylalanine residue and the cucurbituril [7] of the peptide, and may be analyzed in the present invention.
- the qualitative and quantitative analysis methods according to the present invention are applicable to various mass spectrometry based methods, for example, electrospray ionization mass spectrometry (ESI-MS), substrate-assisted laser desorption ionization mass spectrometry (MALDI). -MS), ion mobility mass spectrometry (IM-MS), or tandem mass spectrometry based on collision-induced dissociation.
- ESI-MS electrospray ionization mass spectrometry
- MALDI substrate-assisted laser desorption ionization mass spectrometry
- -MS ion mobility mass spectrometry
- tandem mass spectrometry based on collision-induced dissociation.
- the mixing ratio of the peptide solution and the cucurbituril [7] in step a) may be 10 parts by weight to 1000 parts by weight of the cucurbituril [7] with respect to 100 parts by weight of the peptide solution, and the content of cucurbituril [7] is 10 parts by weight. If it is less than the portion, there is a problem that complex formation with the peptide may not be efficient, and if it exceeds 1000 parts by weight, there is a problem that extra cooker bituril [7] is ionized, which is not preferable.
- D-type monosaccharides (D-Gal, D-Glc, D-Fru, D-Man, D-All, D-Alt, D-Tal), L-type monosaccharides (L-Gul), cucurbituril [7], acetic acid Ammonium, lithium acetate, sodium acetate and potassium acetate were purchased from Sigmal Aldrich (St. Louis, MO, USA). HPLC-grade water purchased from Avantor Performance Materials, Inc. (Center Vallet, PA, USA) was used as a solvent, and a stock solution of monosaccharides was prepared at least 100 mM, and the exact concentration of the stock solution was determined by nuclear magnetic resonance spectroscopy. magnetic resonance spectroscopy).
- ITC Isothermal calorimetry
- ITC experiments were measured using a VP-ITC calorimetry (Microcal, Northampton, MA, USA) at 25 ° C. 0.4 mM CB [7] solution in ITC cells was titrated with a syringe containing 10 mM aqueous solution of monosaccharides. The solution solution was degassed before the experiment, the number of injections was 40 and the injection volume was 6 ⁇ L. Initial equilibration time was 1000 s and injection interval was 300 s.
- Dual mass spectrometry (Tandem MS, MS 2 ) experiments for monosaccharide analysis were performed using a Thermo Scientific LTQ Velos Dual Ion Trap Mass Spectrometer (San Jose, CA, USA) with an ESI source.
- the spray voltage was 3.5 kV
- the temperature of the capillary was 300 ° C.
- the sheath gas flow was 18 (arbitrary units).
- the concentration of CB [7] was 150 ⁇ M and the concentrations of ammonium and metal salts were 300 ⁇ M.
- the concentration of D-allose for quantitative analysis of each monosaccharide was adjusted to 20 ⁇ M.
- Normalized collision energy (CE Norm) value at the time of content by normalized collision energy (CE Norm) and the standard addition method at the time of content by the internal standard method was set at 15% and 18%, respectively.
- High resolution mass spectrometry experiments were performed with a Thermo Q-Exactive Orbitrap mass spectrometer.
- the spraying voltage was 4.00 kV and the capillary temperature was 200 ° C.
- Ion mobility measurement experiments were carried out using a Synapt G2 HDMS mass spectrometer with a Z-spray ESI source (Waters, Manchester, U.K.). Capillary, sampling cone, and extraction cone voltages were 2.00 kV, 20 V, and 2.00 V, respectively, and the source and desolvent temperatures were 100 and 150 ° C, respectively.
- the gas flows of helium IMS cells were 180 mL / min and 60 mL / min, respectively, and the propagation rates and heights were 280 m / s and 13 V, respectively.
- polyaniline was used to correct the arrival time for the impact cross section.
- the initial geometry of the CB [7] -monosaccharide complex ions was formed using Hyperchem 7.5 (Hypercube Inc., Gainesvile, FL, USA) to insert monosaccharides into the cavity of CB [7], forming a candidate structure in the gas phase. Simulated annealing was performed to obtain. The final frame of 300 annealing cycles (90 ns) was extracted and further structural optimization was performed for the five lowest energy structures of each composite ion. Structure optimization was performed using DFT calculations and Q-Chem4.1 computational package (Q-Chem Inc., Pittsburgh, PA, USA). Subsequently, isothermal annealing was performed at 600 ° C. for the optimized ⁇ complexes to observe the structural differences between the monosaccharides inside the cavities of CB [7].
- the signal of the fragment peaks in the MS 2 spectrum was integrated and the relative abundance ratio between the two fragment peaks ( m / z 662.8 and 671.8) was obtained.
- m / z 653.8 and 671.8 were used for quantification because the abundance ratios of Man and Fru m / z 662.8 per 671.8 were similar.
- the signal of the fragment peaks was integrated at 5 ⁇ . Then, the ⁇ value of the two monosaccharides was calculated using the following equation (1) and Table 1 below.
- the monosaccharide isomers in the absence of water, the monosaccharide isomers will be able to bind with the synthetic polymer, and the structural difference between the monosaccharide isomers will be easily expressed through the owner-guest interaction with the synthetic polymer CB [7] in the gas phase.
- the present invention has been completed.
- Monosaccharides to be analyzed in the present invention are not necessarily limited thereto, but the most common monosaccharide isomers in the human body are D-galactose (Gal), D-glucose (Glc), D-mannose (Man) and D-fructose. (Fru) was used, and the interaction between them and CB [7] in an aqueous solution was first investigated by thermal measurement using an isothermal titration calorimeter (ITC). As a result, it was confirmed that none of the monosaccharides showed significant interaction with CB [7] in aqueous solution (FIG. 2), probably because these monosaccharides are hydrophilic and have no cationic functional groups ( Lee, JW et al. J. Phys. Chem. B 2013 , 117 , 8855).
- ITC isothermal titration calorimeter
- CB [7] and monosaccharide complexes are formed through electrospray ionization (ESI) (FIG. 3), which removes the interaction between water and monosaccharides in ESI and enhances electrostatic interaction.
- EI electrospray ionization
- CB [7] -monosaccharide complexes were observed as cationized forms with ammonium ions or alkali metal ions, depending on the type of salt added to the solution, by performing MS 2 to CB [7]-with ammonium ions or alkali metal ions. Investigation of the cleavage pattern of monosaccharide complexes (FIGS.
- CB [7] used in the present invention amplifies small differences in monosaccharide structure in the gas phase, yielding distinctive cleavage patterns and facilitating qualitative analysis through MS 2 .
- these distinct cleavage patterns of CB [7] -monosaccharide complex ions were observed by three different mass spectrometers (ie, ion traps, orbitrap and Q-TOF mass spectrometers) employing different MS 2 methods. Universality was demonstrated (FIG. 6).
- the monosaccharides can be qualitatively distinguished using CB [7], and quantitative analysis of the monosaccharides is possible.
- the cleavage pattern of the mixture of CB [7] -monosaccharide complex ions bound to ammonium salts can be separated by a linear combination of fragmentation patterns of each of the complex ions. It is noted, however, that the ratio of the complex ions of each of the monosaccharides obtained from this linear separation is not necessarily consistent with the ratio of monosaccharides in solution since it is affected by both the binding in the solution and the binding in the gas phase observed in MS. Should be.
- ⁇ A and ⁇ Ref represent the fractions of the monosaccharides to be analyzed as the complex ions and the monosaccharides selected as the internal standard (reference).
- the gas phase fractions ⁇ A and ⁇ Ref of the monosaccharide complexes were obtained to quantify the monosaccharides to be analyzed in the range of 10-100 ⁇ M using Equation 1 above. It was confirmed that the ratio of ⁇ A and ⁇ Ref was proportional to the ratio of the monosaccharides selected as analyte and the monosaccharides in the solution. 8a shows a linear relationship between the ratio of monosaccharides in solution and the ratio of monosaccharides of CB [7] -monosaccharide complex ions bound to ammonium ions in the gas phase.
- the detection limit (LOD) and quantification limit (LOQ) of the four monosaccharides were 0.46-0.90 g / mL and 1.39-2.72 g / mL, respectively (see Table 2). It is suggested that it is a very suitable method for determining the concentration of.
- MS is based on a method of adding a standard to infer the concentration of the analyte from an experiment including adding one of the monosaccharides in the mixture as a standard to the analyte solution for quantification of the monosaccharide in the bicomponent monosaccharide mixed solution
- CE Norm in MS 2 (LTQ Velos) . was set to 18%, and a relationship between each of the natural monosaccharides and the ratio of two monosaccharides similar to that obtained from Allose (All) (Fig. 8a) was obtained (Fig. 8b).
- the concentration ratio of the said monosaccharide was obtained by calculating the value of two monosaccharides (indicated by A and B) in the mixture using the above [Formula 3]. Using this method, the mixture concentration of two monosaccharides could be calculated very accurately as shown in Tables 3 and 4 below.
- a M indicates monosaccharides, Gal, Man, and Fru.
- the qualitative and quantitative analysis of the monosaccharides using the cucurbituril [7] according to the present invention can easily and quickly distinguish monosaccharides without separate sample processing such as derivatization, which has been pointed out as a problem of the prior art.
- the effect of enabling relative and absolute quantification of monosaccharides can significantly reduce the analysis time and cost of monosaccharides.
- InsB was purchased from Anygen (Gwangju, Korea).
- Human recombinant Ins Ubq from bovine erythrocytes, Myb from horse heart, pepsin from porcine gastric mucosa, and formic acid were purchased from Sigma-Aldrich (St. Louis, MO, USA).
- HPLC-grade water and acetonitrile were obtained from Avantor Performance Materials, Inc. (Center Valley, PA, USA) was purchased and used as a solvent.
- Cookerbituril [7] was purchased from CBTECH (Pohang, Korea) and a stock solution (1 mM) was prepared by dissolving cookerbituril [7] in water.
- Pepsin digests were prepared by incubating protein (100 ⁇ M) with pepsin (0.24 mg / mL) for 15 minutes at 37 ° C. in water containing 1% v / v formic acid. In ESI-MS, the sample was diluted 10-fold. Cucurbituril [7] was then added to the solution, and the solution was subjected to ESI-MS analysis. The concentration of cucurbituril [7] was optimized to 50, 35, 100, and 50 ⁇ M for 10 ⁇ M of InsB, Ins, Ubq, and Myb, respectively.
- Electrospray Ionization Mass Spectrometry and Collision Induction harry (Collision-Induced Dissociation)
- a Waters Synapt G2 HDMS mass spectrometer with a MALDI source using a 355-nm Nd: YAG laser was used (Waters, Manchester, UK).
- MALDI laser firing speed and energy were 1000 Hz and 350 (arbitrary units), respectively.
- the substrate solution was 20 mg / mL ⁇ -cyano-4-hydroxycinnamic acid (CHCA) in 77% acetonitrile, 22.9% water and 0.1% formic acid (v / v).
- the concentration of protein for pepsin digestion was 20 ⁇ and pepsin digestion conditions were the same as those used in the ESI-MS experiments.
- sample solution for MALDI-MS was then prepared by mixing the substrate and analyte solutions in a volume ratio of 1: 1. For analysis, sample solutions (2 ⁇ L) were spotted on the sample plate.
- ion mobility MS (IM-MS) experiments a Waters Synapt G2 HDMS device was used. Ion mobility measurements were performed using four device parameters. The gas flow, TWIMS wavelength velocity and wavelength height for helium cells are fixed at 180 mL min -1 , 300 ms -1 and 20.0 V, respectively, while the gas flow for drift cells is three different: 50, 60 or 80 mL min -1 . The conditions were used. Compensation of the experimental arrival time with the collision cross-sectional area ( ⁇ D ) values is based on polyalanine (Henderson, SC; Li, J .; Counterman, AE; Clemmer, DE J. Phys. Chem . B 1999 , 103 , 8780).
- Each of the peptide models was merged with a cucurbituril [7] molecule and annealing simulation 500 cycles were performed using the following profile: heating from 300 K to 800 K for 50 ps, constant temperature simulation at 800 K for 50 ps, 25 ps Cool from 800 K to 300 K, and equilibrate at 300 K for 25 ps. Structures were extracted from the last frame of each annealing cycle and considered as candidate structures. Five structures with the lowest potential energy were selected and the projection approximation model (Wyttenbach, T .; vonHelden, G .;) adopted in MOBCAL ( http://www.indiana.edu/ ⁇ nano/ ).
- 15A-15D show the mass spectra of pepsin digested peptides with and without cucurbituril [7].
- Table 5 also lists the peaks of the peptides with N-terminal phenylalanine and the ratio of their relative abundance in the presence and absence of cucurbituril [7].
- CID spectra of uncomplexed InsB1-11 ions were observed to consist of b- and y-type fragment ions, which are the fragments commonly found in low-energy CIDs (Paizs, B .; Suhai, S. Mass Spectrom . Rev. 2005 , 24 , 508-548).
- the complexed InsB1-11 ions were also dissociated into b- and y-type fragment ions (FIG. 16A, bottom), through which additional sequence information can be obtained.
- up to 100% sequence coverage was obtained for the complexed InsB1-11 ions, but the uncomplexed ions did not fragment between Gly8 and Ser9 (inset of FIG. 16A).
- Ubq4-15 peptide ions also exhibited complete sequence coverage, with a larger number of b / y complementary ion pairs observed in the complexed form (see Table 6).
- the sequence of the complexed Myb34-70 ions was too large in size to be completely covered, but nevertheless extensive fragmentation was observed (61% to 75%, see Table 6).
- the complexed InsB1-13 and InsA1-13 / B1-13 ions also increased sequence coverage (83% to 100% and 83% to 92%, respectively) and larger b / y complementary ion pairs It can be seen that the ratio of these.
- the signal enhancing effect of cucurbituril [7] is not limited to ESI-MS, but also applicable to MALDI-MS, and it provides information on peptides that could not be easily detected in the absence of cucurbituril [7].
- the present invention investigated the structure of cucurbituril [7] peptide complex ions using IM-MS (see FIG. 18). It can provide structural information. According to the IM-MS results, both complexed and uncomplexed peptide ions are generally present in one or two structures.
- the theoretical collision cross-sectional area ( ⁇ D ) values for the lowest energy structures of the composite ions obtained through computer modeling generally show good agreement with the experimental data. Looking at the structure of the theoretical models, it is shown that cucurbituril [7] binds to the N-terminal phenylalanine of the peptides.
- FIG. 16C shows that cleavage in the C-terminal amide backbone of Lys residues does not occur in the CID of uncomplexed Ubq4-15 peptide ions. This is in contrast to the cleavage of the C-terminal amide bonds in the presence of Lys (Paizs, B .; Suhai, S. Mass Spectrom . Rev. 2005 , 24 , 508-548).
- the present invention provides an improved mass spectrometry based analysis method for proteins by improving the sequence coverage in signal and double mass spectrometry of peptides digested with puckerin by Cookerbituril [7].
- Signal enhancement by the addition of cucurbituril [7] may be attributed to the increased proton affinity.
- improved sequence coverage by cucurbituril [7] can be judged because cucurbituril [7] interacts strongly with residues charged at varying amounts during CID to enable several fragmentation pathways.
- the method according to the invention does not require the preparation of new instruments, chemical labels or special samples, and can be carried out by simply adding a small amount of commercially available cucurbituril [7] to the sample.
- the present invention can provide a very effective means for general purpose protein analysis.
- the analysis signal caused by the target sample can be significantly improved, and the sequence coverage of the peptide to be analyzed can be improved. have.
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Abstract
Description
본 발명은 쿠커비투릴[7]을 이용한 단당류의 정성 및 정량 분석방법에 관한 것으로 상세하게는 전자분무이온화 방법을 이용하여 암모니아 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온을 형성한 후, 이중질량분석법(Tandem mass spectrometry)을 통해 기체상 주인-손님 상호작용에 따른 각 복합체 이온의 쪼개짐 패턴을 확인하여 기체상에서 단당류를 정성 및 정량 분석하는 방법에 관한 것이다.The present invention relates to a qualitative and quantitative analysis method of monosaccharides using cucurbituril [7], and in detail, after forming a cucurbituril [7] -monosaccharide complex ion to which ammonia ions are bound using an electrospray ionization method, double mass spectrometry Tandem mass spectrometry relates to a method for qualitative and quantitative analysis of monosaccharides in a gas phase by identifying cleavage patterns of complex ions according to gas phase owner-guest interactions.
또한, 본 발명은 쿠커비투릴[7]을 이용한 펩타이드의 정성 및 정량 분석방법에 관한 것이다.The present invention also relates to a method for qualitative and quantitative analysis of peptides using cucurbituril [7].
이성체 생체분자들의 정성 및 정량 분석법 개발은 화학, 생물학 등의 다양한 분야에 있어서 중요한 과제이다. 다양한 이성체 생체분자들 중, 단당류는 체내 어디에서나 관찰되는 가장 흔한 이성체 생체분자로서 여러 가지 생물학적 과정과 질환에 관여한다. 주목할 점은 단당류의 농도 조절 오류가 암, 당뇨병과 같은 다양한 질병과 관련이 있다는 것이다(Johnson et al, Am. J. Clin . Nutr . 2007, 86, 899; Pitknen, E. Clin. Chim. Acta 1996, 251, 91). The development of qualitative and quantitative analysis of isomeric biomolecules is an important task in various fields such as chemistry and biology. Of the various isomeric biomolecules, monosaccharides are the most common isomeric biomolecules found anywhere in the body and are involved in various biological processes and diseases. Of note is that the errors related to the concentration of mono- and adjust a variety of diseases such as cancer, diabetes (Johnson et al, Am J. Clin Nutr 2007, 86, 899;..... Pitknen, E. Clin Chim Acta 1996 , 251 , 91).
하지만, 단당류들은 동일한 질량과 매우 유사한 구조로 인해 정성 및 정량 분석이 어렵다는 문제가 있다. 가장 널리 이용되고 있는 당류 분석 방법은 효소와 당류들 간의 산화-환원 반응을 이용한 방법이다(Wang, J. Chem . Rev. 2008, 108, 814). 하지만 이 방법의 경우, 높은 정확도와 정밀도를 얻기 위해서 효소가 담긴 용액의 수소이온농도지수나 온도가 항상 적정 범위 내에 있도록 조절해 주어야 한다는 단점이 있다.However, monosaccharides have a problem in that qualitative and quantitative analysis is difficult due to the same mass and very similar structure. The most widely used sugar analysis method is a method using an oxidation-reduction reaction between enzymes and sugars (Wang, J. Chem . Rev. 2008 , 108 , 814). However, this method has a disadvantage in that the hydrogen ion concentration index or the temperature of the enzyme-containing solution must be adjusted to be always in the proper range in order to obtain high accuracy and precision.
또한, 핵자기공명(nuclear magnetic resonance) 장치의 경우 단당류들이 각각 존재할 경우 구별이 쉽지만, 이 단당류들이 혼합물 상태로 존재할 경우 혼합된 단당류들의 각각의 스펙트럼선들이 중첩되어 각 선들의 폭이 증가되어 단당류 혼합물들의 정성 및 정량 분석이 어렵다는 문제가 있으며, 액체 크로마토그래피(liquid chromatography)와 가스 크로마토그래피(gas chromatography)의 경우 단당류를 분석할 때 높은 감도를 가지기 위해서는 각각 컬럼의 유도체화(derivatization)와 단당류들의 유도체화를 수행해야 하기 때문에 많은 시료 준비단계가 필요하다는 단점이 있다.In addition, in the case of the nuclear magnetic resonance device, it is easy to distinguish when monosaccharides are present, but when the monosaccharides are present in a mixed state, the spectral lines of the mixed monosaccharides are overlapped to increase the width of each monosaccharide mixture. In the case of liquid chromatography and gas chromatography, in order to have high sensitivity when analyzing monosaccharides, derivatization of columns and derivatives of monosaccharides are performed. The disadvantage is that a large number of sample preparation steps are required because of the need to perform the ignition.
이에 최근에는 높은 감도와 적은 시료 소모량, 그리고 빠른 분석 속도를 위하여 질량 분석법(Mass Spectrometry, MS)을 이용하여 당류를 분석하는 방법들이 연구되고 있지만, 당류의 유도체화를 요구하거나 (Gaucher S. P. et al. Anal. Chem. 1998, 70, 3009) 혹은 에너지-분해 MS(ERMS)와 같은 다수의 실험들이 추가로 필요하다는 단점이 있다(Madhusudanan, K. P. J. Mass Spectrom . 2006, 41, 1096). 이에 따라, 단당류의 정성 및 정량 분석을 위한 신속하고 편리한 방법의 개발이 요구되고 있다.Recently, methods for analyzing sugars using mass spectrometry (MS) for high sensitivity, low sample consumption, and fast analysis speed have been studied, but require derivatization of sugars (Gaucher SP et al. Anal. Chem. 1998 , 70 , 3009) or a number of experiments, such as energy-degrading MS (ERMS), are additionally required (Madhusudanan, KP J. Mass Spectrom . 2006 , 41 , 1096). Accordingly, there is a need for a rapid and convenient method for qualitative and quantitative analysis of monosaccharides.
또한, 연성 이온화 (soft ionization) 기술들의 발전에 따라서 질량분석법 (mass spectrometry, MS)이 단백질 서열분석 및 검출을 위한 방법으로서 이용되고 있다. 통상적인 방법에서, 단백질들은 먼저 효소에 의해서 소화된 다음, 전자분무 이온화 MS (ESI-MS) 또는 기질-보조 레이저 탈착 이온화 MS (MALDI-MS)에 의해서 분석된다 (비특허문헌 1). 이때, 상기 소화로부터 생성된 다수의 펩타이드들이 단백질 1차 구조 (즉, 아미노산 서열)에 대한 풍부한 정보를 제공한다. 그러나, 이온화 과정 도중 다양한 펩타이드가 양성자를 얻기 위해서 경쟁하기 때문에, 낮은 양성자 친화도를 갖는 것들은 낮은 이온화 효율을 나타내고, 이는 종종 MS 분석을 어렵게 하는 동시에 서열 커버리지를 감소시킨다 (비특허문헌 2). 따라서, 효과적인 단백질 분석을 위해서는 관심대상이 되는 펩타이드들의 이온화 효율을 상승시키는 것이 바람직하다. 관련하여, 유도체화 (derivatization) (비특허문헌 2) 및 기구적 변형 (instrumental modification) (비특허문헌 3)이 이온화 효율을 향상시킬 수 있는 것으로 알려져 있지만, 현재까지 편리하면서도 널리 허용되는 방법이 보고된 바는 없다.In addition, with the development of soft ionization techniques, mass spectrometry (MS) is being used as a method for protein sequencing and detection. In a conventional method, proteins are first digested by enzymes and then analyzed by electrospray ionization MS (ESI-MS) or substrate-assisted laser desorption ionization MS (MALDI-MS) (Non Patent Literature 1). At this time, a plurality of peptides generated from the digestion provide abundant information about the protein primary structure (ie amino acid sequence). However, because various peptides compete for protons during the ionization process, those with low proton affinity show low ionization efficiency, which often makes MS analysis difficult and at the same time reduces sequence coverage (Non Patent Literature 2). Thus, for effective protein analysis, it is desirable to increase the ionization efficiency of the peptides of interest. In this regard, it is known that derivatization (Non-Patent Document 2) and instrumental modification (Non-Patent Document 3) can improve the ionization efficiency, but a convenient and widely accepted method has been reported to date. Nothing has happened.
한편, 쿠커비투릴[n] (Cucurbit[n]urils, (CB[n]s, n = 5, 6, 7, 8, 및 10)은 n 글리콜우릴 (C4H2N4O2) 반복 단위들 및 2n 메틸렌 (-CH2-) 연결 단위들을 포함하며, 다양한 화학 분야들에서 사용되는 중성의 수용성 주인 분자이다 (비특허문헌 4). 쿠커비투릴[n]은 비극성기들을 캡슐화하는 소수성 공동, 및 양이온기와 결합할 수 있는 우레이도 카르보닐기와 나란히 위치하는 두 개의 극성 입구들을 포함한다 (비특허문헌 5). 쿠거비투릴[n]은 주인 분자로서 탁월한 특성들을 갖기 때문에, 용액 상 (비특허문헌 6) 및 기체 상 (비특허문헌 7) 등 다양한 조건에서 널리 연구된 바가 있다.Meanwhile, cucurbituril [ n ] (Cucurbit [ n ] urils, (CB [ n ] s, n = 5, 6, 7, 8, and 10) gives n glycoluril (C 4 H 2 N 4 O 2 ) repeat units And 2 n methylene (—CH 2 —) linking units, and are neutral, water soluble host molecules used in various chemical fields (Non-Patent Document 4): cucurbituril [ n ] is a hydrophobic cavity encapsulating nonpolar groups, and A ureido carbonyl group capable of bonding with a cationic group includes two polar inlets located side by side (Non Patent Literature 5) Since Cougarbituril [ n ] has excellent properties as a host molecule, it is a solution phase (
그 중 쿠커비투릴[7]은 용액 중 펩타이드 및 단백질의 N-말단 페닐알라닌 (Phe) 잔기들과 강한 복합체를 형성하는데 (Ka ~ 106-107 M-1) (비특허문헌 6), 이는 페닐알라닌의 소수성 곁사슬이 쿠커비투릴[7]의 공동 내에 잘 담겨지고, N-말단 암모늄기가 쿠커비투릴[7]의 카르보닐 산소와 효과적인 이온-쌍극자 상호작용을 하기 때문이다 (도 1 참조) (비특허문헌 8). 쿠커비투릴[7]과 페닐알라닌 사이의 상호작용은 ESI 또는 MALDI 등의 이온화를 통해서 그 복합체가 기체 상으로 상변환되는 과정에서도 보존된다 (비특허문헌 6). 또한, 쿠커비투릴[6] 및 라이신 (Lys)-함유 펩타이드들을 사용한 본 발명자들의 종래 연구에 따르면 (비특허문헌 7), 쿠커비투릴[n]은 주인 분자로서 펩타이드의 선택적인 단편화를 포함한 독특한 특성들을 유도할 수 있다는 것을 관찰할 수 있었으며, 따라서 쿠커비투릴[7]을 이용한 질량분석법 기반 펩타이드 및 단백질 분석법 개선에 관한 연구를 진행하였다.The cucurbituril of [7] to form the N- terminal phenylalanine (Phe) residue and strong complex of peptides and proteins in solution (K a ~ 10 6 -10 7 M -1) ( Non-Patent Document 6), which phenylalanine This is because the hydrophobic side chain of is well contained in the cavity of cucurbituril [7], and the N-terminal ammonium group has an effective ion-dipole interaction with carbonyl oxygen of cucurbituril [7] (see Fig. 1) (Non Patent Literature 8) . Interaction between cucurbituril [7] and phenylalanine is also preserved in the process of phase-conversion of the complex to the gas phase through ionization such as ESI or MALDI (Non-Patent Document 6). In addition, according to our previous studies using cucurbituril [6] and lysine (Lys) -containing peptides (Non Patent Literature 7), cucurbituril [n] as a host molecule can induce unique properties including selective fragmentation of peptides. In this regard, the study was carried out to improve mass spectrometry-based peptide and protein assays using cucurbituril [7].
비특허문헌 1: Steen, H.; Mann, M. Nat. Rev. Mol . Cell Biol . 2004, 5, 699-711.[Non-Patent Document 1] Steen, H .; Mann, M. Nat. Rev. Mol . Cell Biol . 2004 , 5 , 699-711.
비특허문헌 2: Mirzaei, H.; Regnier, F. Anal. Chem. 2006, 78, 4175-4183.[Non-Patent Document 2] Mirzaei, H .; Regnier, F. Anal. Chem. 2006 , 78 , 4175-4183.
비특허문헌 3: Heemskerk, A. A. M.; Busnel, J.-M.; Schoenmaker, B.; Derks, R. J. E.; Klychnikov, O.; Hensbergen, P. J.; Deelder, A. M.; Mayboroda, O. A. Anal. Chem. 2012, 84, 4552-4559.[Non-Patent Document 3] Heemskerk, AAM; Busnel, J.-M .; Schoenmaker, B .; Derks, RJE; Klychnikov, O .; Hensbergen, PJ; Deelder, AM; Mayboroda, OA Anal. Chem. 2012 , 84 , 4552-4559.
비특허문헌 4: Kim, K.; Selvapalam, N.; Ko, Y. H.; Park, K. M.; Kim, D.; Kim, J. Chem. Soc. Rev. 2007, 36, 267-279.[Non-Patent Document 4] Kim, K .; Selvapalam, N .; Ko, YH; Park, KM; Kim, D .; Kim, J. Chem. Soc. Rev. 2007 , 36 , 267-279.
비특허문헌 5: Assaf, K. I.; Nau, W. M. Chem . Soc . Rev. 2015, 44, 394-418.[Non-Patent Document 5] Assaf, KI; Nau, WM Chem . Soc . Rev. 2015 , 44 , 394-418.
비특허문헌 6: Lee, H. H.; Choi, T. S.; Lee, S. J. C.; Lee, J. W.; Park, J.; Ko, Y. H.; Kim, W. J.; Kim, K.; Kim, H. I. Angew . Chem . Int . Ed. 2014, 53, 7461-7465.[Non-Patent Document 6] Lee, HH; Choi, TS; Lee, SJC; Lee, JW; Park, J .; Ko, YH; Kim, WJ; Kim, K .; Kim, HI Angew . Chem . Int . Ed. 2014 , 53 , 7461-7465.
비특허문헌 7: Lee, J. W.; Heo, S. W.; Lee, S. J.; Ko, J. Y.; Kim, H.; Kim, H. I. J. Am. Soc. Mass. Spectrom. 2013, 24, 21-29.[Non-Patent Document 7] Lee, JW; Heo, SW; Lee, SJ; Ko, JY; Kim, H .; Kim, HI J. Am. Soc. Mass. Spectrom. 2013 , 24 , 21-29.
비특허문헌 8: Chinai, J. M.; Taylor, A. B.; Ryno, L. M.; Hargreaves, N. D.; Morris, C. A.; Hart, P. J.; Urbach, A. R. J. Am. Chem . Soc . 2011, 133, 8810-8813.[Non-Patent Document 8] Chinai, JM; Taylor, AB; Ryno, LM; Hargreaves, ND; Morris, CA; Hart, PJ; Urbach, AR J. Am. Chem . Soc . 2011 , 133 , 8810-8813.
본 발명은 상술한 문제점을 해결하기 위해 안출된 것으로, 본 발명에서는 전자분무이온화 방법을 이용하여 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온을 형성한 후, 이중질량분석법(Tandem mass spectrometry)을 통해 각 복합체 이온의 쪼개짐 패턴을 확인하여 단당류를 정성 및 정량 분석하는 방법을 제공하고자 한다. The present invention has been made to solve the above-described problems, in the present invention, after forming a cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound using an electrospray ionization method, a double mass spectrometry It is to provide a method of qualitative and quantitative analysis of monosaccharides by checking the cleavage pattern of each complex ion through.
또한, 본 발명에서는 다양한 질량분석법 기반의 방법들을 사용하여 펩타이드 시료를 분석함에 있어서, 간편하게 쿠커비투릴[7]을 첨가해 줌으로써, 분석대상이 되는 펩타이드의 분석능을 획기적으로 향상시킬 수 있는 쿠커비투릴[7]을 이용한 펩타이드의 정성 및 정량 분석방법을 제공하고자 한다.In addition, in the present invention, in the analysis of peptide samples using various mass spectrometry-based methods, the addition of cooker bituril [7] can be added to cooker bituril [7], which can dramatically improve the analytical ability of the peptide to be analyzed. To provide a method for qualitative and quantitative analysis of peptides.
본 발명은 상기 과제를 해결하기 위하여,The present invention to solve the above problems,
(a) 단당류 수용액에 쿠커비투릴[7] 및 암모늄염을 혼합하는 단계; (b) 상기 혼합물을 전자분무이온화(electrospray ionization) 방법으로 이온화시켜 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온을 형성하는 단계; 및 (c) 상기 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온을 이중질량분석법(Tandem mass spectrometry)을 이용하여 정성 및 정량 분석하는 단계;를 포함하는 쿠커비투릴[7]을 이용한 단당류의 정성 및 정량 분석방법을 제공한다.(a) mixing cucurbituril [7] and an ammonium salt in an aqueous monosaccharide solution; (b) ionizing the mixture by electrospray ionization to form ammonium ions-linked cucurbituril [7] -monosaccharide complex ions; And (c) qualitative and quantitative analysis of the cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound using a Tandem mass spectrometry; Provide a quantitative analysis method.
본 발명의 일 실시 예에 따르면 상기 단당류 수용액에 포함된 단당류는 갈락토오스(Galactose, Gal), 글루코오스(Glucose, Glc), 프럭토오스(Fructose, Fru), 만노오스(Mannose, Man), 알로오스(Allose, All), 알트로오스(Altrose, Alt), 굴로오스(Gulose, Gul), 탈로오스(Talose, Tal), 사이코오스(Psicose, Psi), 소르보오스(Sorbose, Sor), 타카토오스(Tagatose, Tag), 이도오스(Idose, Ido)으로 이루어진 군에서 선택될 수 있다.According to one embodiment of the present invention, the monosaccharides contained in the monosaccharide solution are galactose (Galactose, Gal), glucose (Glucose, Glc), fructose (Fructose, Fru), mannose (Mannose, Man), allose (Allose) , All), Altrose (Alt), Gulose (Gulose, Gul), Taloose (Talose, Tal), Psicose (Psi), Sorboose (Sorbose, Sor), Takatose (Tagatose) , Tag), and Idoose (Idose, Ido) may be selected from the group consisting of.
본 발명의 다른 일 실시 예에 따르면, 상기 암모늄염은 아세트산암모늄, 염화암모늄, 탄산암모늄, 수산화암모늄으로 이루어진 군에서 선택되는 1종 이상일 수 있다.According to another embodiment of the present invention, the ammonium salt may be at least one selected from the group consisting of ammonium acetate, ammonium chloride, ammonium carbonate, ammonium hydroxide.
본 발명의 또 다른 일 실시 예에 따르면, 상기 (b) 단계의 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온의 형성은 상기 혼합물의 전자분무이온화에 의한 쿠커비투릴[7]과 단당류의 기체상 주인-손님 상호작용에 의해 형성되는 것일 수 있다.According to another embodiment of the present invention, the formation of the cucurbituril [7] -monosaccharide complex ion to which the ammonium ion is bound in step (b) is formed in the gas phase of the cucurbituril [7] and the monosaccharide by electrospray ionization of the mixture. It may be formed by owner-guest interaction.
본 발명의 또 다른 일 실시 예에 따르면, 상기 (a) 단계의 단당류 수용액, 쿠커비투릴[7] 및 암모늄염의 농도비는 1:1.5:3 내지 1:6:12일 수 있다.According to another embodiment of the present invention, the concentration ratio of the monosaccharide solution, cucurbituril [7] and the ammonium salt of step (a) may be 1: 1.5: 3 to 1: 6: 12.
본 발명의 또 다른 일 실시 예에 따르면, 상기 단당류의 정성 및 정량 분석은 상기 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온으로부터 생성된 조각 이온(fragment ion)들의 질량/전하(m/z)의 비에 따른 이온량 비율을 분석하는 단계;를 포함할 수 있다.According to another embodiment of the present invention, the qualitative and quantitative analysis of the monosaccharides is based on the mass / charge (m / z) of fragment ions generated from the cucurbituril [7] -monosaccharide complex ion to which the ammonium ion is bound. Analyze the ratio of the amount of ions according to the ratio of).
본 발명의 또 다른 일 실시 예에 따르면, 상기 단당류의 정량 분석 시 상기 (a) 단계의 단당류 수용액은 분석대상 단당류와 내부표준물질로 선정된 단당류가 혼합되어 있는 것일 수 있다.According to another embodiment of the present invention, when the quantitative analysis of the monosaccharides, the monosaccharide solution of step (a) may be a mixture of the monosaccharide selected as the analysis target monosaccharides and the internal standard.
이때, 상기 단당류의 정량 분석은 내부표준법(internal standard method)을 통해 도출한 검정 곡선을 통해 분석할 수 있다.At this time, the quantitative analysis of the monosaccharides may be analyzed through a calibration curve derived through an internal standard method.
또한, 상기 내부표준물질로 선정된 단당류는 알로오스(Allose, All), 알트로오스(Altrose, Alt), 굴로오스(Gulose, Gul), 탈로오스(Talose, Tal)로 이루어진 군에서 선택될 수 있다.In addition, the monosaccharide selected as the internal standard may be selected from the group consisting of allose (Allose, All), Altrose (Altrose, Alt), gulose (Gulose, Gul), Taloose (Talose, Tal) have.
본 발명의 또 다른 일 실시 예에 따르면, 상기 단당류의 정량 분석 시 상기 (a) 단계의 단당류 수용액은 서로 다른 복수의 분석대상 단당류가 혼합되어 있는 것일 수 있다.According to another embodiment of the present invention, when the quantitative analysis of the monosaccharides, the aqueous monosaccharide solution of step (a) may be a mixture of a plurality of different analysis target monosaccharides.
이때, 상기 단당류의 정량 분석은 표준 첨가법(standard addition method)을 통해 도출한 검정 곡선을 통해 분석할 수 있다.In this case, the quantitative analysis of the monosaccharides may be analyzed through a calibration curve derived through a standard addition method.
또한, 본 발명은 상기 과제를 해결하기 위하여,In addition, the present invention to solve the above problems,
a) 펩타이드 용액에 쿠커비투릴[7]을 혼합하여 펩타이드-쿠커비투릴[7] 복합체를 형성하는 단계; 및 b) 상기 복합체를 질량분석법에 의해서 분석하는 단계를 포함하는, 쿠커비투릴[7]을 이용한 펩타이드의 정성 및 정량 분석방법을 제공한다.a) mixing a cucurbituril [7] with a peptide solution to form a peptide-cookerbituril [7] complex; And b) provides a method for qualitative and quantitative analysis of the peptide using cucurbituril [7] comprising the step of analyzing the complex by mass spectrometry.
본 발명의 일 실시예에 따르면, 상기 복합체는 상기 펩타이드의 N-말단 페닐알라닌 잔기와 쿠커비투릴[7] 사이의 소수성 상호작용 및 이온-쌍극자 상호작용에 의해서 형성될 수 있다.According to one embodiment of the present invention, the complex may be formed by hydrophobic interaction and ion-dipole interaction between N-terminal phenylalanine residue of the peptide and cucurbituril [7].
본 발명의 다른 실시예에 따르면, 상기 펩타이드는 펩신에 의해서 소화된 펩타이드일 수 있다.According to another embodiment of the present invention, the peptide may be a peptide digested by pepsin.
본 발명의 또 다른 실시예에 따르면, 상기 펩타이드는 인슐린, 인슐린의 B-사슬, 유비퀴틴, 미오글로빈 및 그 혼합물로 이루어진 군으로부터 선택된 것일 수 있다.According to another embodiment of the present invention, the peptide may be selected from the group consisting of insulin, B-chain of insulin, ubiquitin, myoglobin and mixtures thereof.
본 발명의 또 다른 실시예에 따르면, 상기 질량분석법은 전자분무 이온화 질량분석법 (ESI-MS), 기질-보조 레이저 탈착 이온화 질량분석법 (MALDI-MS), 이온 이동도 질량분석법 (IM-MS), 또는 충돌 유도 해리 (collision-induced dissociation)를 바탕으로 한 이중 질량분석법 (tandem mass spectrometry)에 기반한 것일 수 있다.According to another embodiment of the present invention, the mass spectrometry is electrospray ionization mass spectrometry (ESI-MS), substrate-assisted laser desorption ionization mass spectrometry (MALDI-MS), ion mobility mass spectrometry (IM-MS), Or it may be based on tandem mass spectrometry based on collision-induced dissociation.
본 발명의 또 다른 실시예에 따르면, 상기 a) 단계에서 펩타이드 용액과 쿠커비투릴[7]의 혼합비는 상기 펩타이드 용액 100 중량부에 대해서 상기 쿠커비투릴[7] 10 중량부 내지 1000 중량부일 수 있다.According to another embodiment of the present invention, the mixing ratio of the peptide solution and cucurbituril [7] in step a) may be 10 parts by weight to 1000 parts by weight of the cucurbituril [7] based on 100 parts by weight of the peptide solution.
본 발명에 따른 쿠커비투릴[7]을 이용한 단당류의 정성 및 정량 분석방법을 이용하면, 단당류들을 쉽고 빠르게 구별할 수 있을 뿐만 아니라 단당류의 상대 정량 및 절대 정량을 가능하게 하는 효과가 있어 단당류의 분석 시간 및 비용을 획기적으로 감소시킬 수 있다. The qualitative and quantitative analysis method of monosaccharides using the cucurbituril [7] according to the present invention can not only easily and quickly distinguish monosaccharides, but also have the effect of enabling the relative and absolute quantification of monosaccharides, and thus the analysis time and The cost can be drastically reduced.
또한, 본 발명에 따르면, 다양한 질량분석법을 사용하여 분석 대상이 되는 펩타이드 시료를 분석함에 있어서, 간단한 방법으로 쿠커비투릴[7]만을 첨가하여 표적 시료에 의해서 야기되는 분석 신호를 획기적으로 향상시킬 수 있으며, 분석 대상 펩타이드의 서열 커버리지를 향상시킬 수 있다.In addition, according to the present invention, in analyzing a peptide sample to be analyzed using a variety of mass spectrometry, it is possible to dramatically improve the analysis signal caused by the target sample by adding only cucurbituril [7] by a simple method, The sequence coverage of the peptide of interest can be improved.
도 1은 본 발명에 따른 단당류의 정성 및 정량 분석방법을 개략적으로 나타낸 도면이다.1 is a view schematically showing the qualitative and quantitative analysis of monosaccharides according to the present invention.
도 2의 a) 내지 h)는 수용액상에서 쿠커비투릴[7]과 단당류 간의 등온 적정 열랑 측정계(Isothermal calorimetry calorimetry, ITC) 측정 결과를 나타낸 도면이다.2 a to h) show the results of isothermal calorimetry calorimetry (ITC) measurement between cucurbituril [7] and monosaccharides in aqueous solution.
도 3은 단당류 20 μM, 쿠커비투릴[7] 50 μM 및 아세트산암모늄 100 μM을 함유한 용액의 MS 스펙트럼을 나타낸 도면이다.3 is a diagram showing an MS spectrum of a solution containing 20 μM of monosaccharides, 50 μM of cucurbituril [7] and 100 μM of ammonium acetate.
도 4는 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온의 MS2 스펙트럼 및 정규화된 충돌에너지(Normalized collision energy, CENorm)에 따른 조각 이온들의 이온량 비율을 나타낸 도면이다.4 is a graph showing the ionic content ratio of fragment ions according to MS 2 spectrum and normalized collision energy (CE Norm ) of a cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound.
도 5의 a) 내지 c)는 알칼리 금속(리튬, 나트륨, 칼륨) 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온의 MS2 스펙트럼을 나타낸 도면이다.5 a) to c) show MS 2 spectra of cucurbituril [7] -monosaccharide complex ions to which alkali metal (lithium, sodium, potassium) ions are bound.
도 6의 a) 내지 b)는 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온을 Synapt G2 HDMS Q-TOF(a)와 Q-EXACTIVE Orbitrap(b) 질량분석기로 측정하여 얻은 MS2 스펙트럼을 나타낸 도면이다.6 a) to b) shows MS 2 spectra obtained by measuring the cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound using Synapt G2 HDMS Q-TOF (a) and Q-EXACTIVE Orbitrap (b) mass spectrometers; The figure shown.
도 7의 a) 내지 b)는 양성자화된 단당류 이온(a), 암모늄 이온이 결합된 단당류 이온(b)을 LTQ Velos 이온 트랩 질량 분석기로 측정하여 얻은 MS2 스펙트럼을 나타낸 도면이다.7 a) to b) show MS 2 spectra obtained by measuring protonated monosaccharide ions (a) and monosaccharide ions (b) in which ammonium ions are bound by an LTQ Velos ion trap mass spectrometer.
도 8의 a) 내지 b)는 내부표준법을 이용하여 도출한 단당류별 검정곡선(a)과 표준첨가법을 이용하여 도출한 단당류 이원혼합물의 검정곡선(b)를 나타낸 도면이다.8 a) to b) show a test curve (a) for each monosaccharide derived using the internal standard method and a test curve (b) for the monosaccharide binary mixture derived using the standard addition method.
도 9는 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온의 구조와 이온 이동성 스펙트럼 분포를 나타낸 도면이다.9 is a diagram showing the structure and ion mobility spectrum distribution of the cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound.
도 10은 쿠커비투릴[7]의 공동 안에서 α형 및 β형 단당류의 C6에 결합된 히드록시기(-OH)의 기하학적 구조를 나타낸 도면이다.Fig. 10 shows the geometry of the hydroxyl group (—OH) bonded to C6 of α and β monosaccharides in the cavity of cucurbituril [7].
도 11의 a) 내지 d)는 쿠커비투릴[7]의 공동 안에서 α형 및 β형 단당류의 C1(a), C2(b), C3(c), C4(d)에 결합된 히드록시기(-OH)의 기하학적 구조를 나타낸 도면이다.11A to 11D show hydroxyl groups (-OH) bound to C1 (a), C2 (b), C3 (c) and C4 (d) of α- and β-type monosaccharides in the cavity of cucurbituril [7]. Figure showing the geometric structure of the.
도 12는 쿠커비투릴[7]의 공동 안에서 α형 Glc와 Man의 C2에 결합된 히드록시기가 유사하게 배치되어 있을 경우의 C1, C2, C3, C4, C6에 결합된 히드록시기(-OH)의 기하학적 구조를 나타낸 도면이다.Fig. 12 shows the geometry of the hydroxyl group (-OH) bonded to C1, C2, C3, C4, and C6 when the hydroxyl group bonded to C2 of α type Glc and Man is similarly arranged in the cavity of cucurbituril [7]. The figure shown.
도 13은 내부표준물질로 사용한 알로오스(Allose, All), 알트로오스(Altrose, Alt), 굴로오스(Gulose, Gul), 탈로오스(Talose, Tal)을 사용하여 형성된 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온의 MS2 스펙트럼 및 정규화된 충돌에너지(Normalized colloision energy, CENorm)에 따른 조각 이온들의 이온량 비율을 나타낸 도면이다.FIG. 13 is a cucurbituril conjugated with ammonium ions formed using allose, all, altrose, alt, gulose, gulose and talos, as internal standards. MS 7 spectrum of the [7] -monosaccharide complex ion and normalized colloision energy (CE Norm ) according to the ionic content ratio of the fragment ions.
도 14는 쿠커비투릴[7]의 구조에 대한 개략도 및 쿠커비투릴[7]이 용액 중 펩타이드 및 단백질의 N-말단 펩타이드 잔기들과 복합체를 형성하는 형태를 개략적으로 도시한 도면이다.FIG. 14 is a schematic diagram of the structure of cucurbituril [7] and a diagram in which cucurbituril [7] forms a complex with N-terminal peptide residues of peptides and proteins in solution.
도 15a 내지 15d는 펩신으로 소화한 펩타이드들에 쿠커비투릴[7]을 첨가한 것과 그렇지 않은 경우의 ESI-MS 스펙트럼을 나타낸 도면이다.15A to 15D are diagrams showing the addition of cookerbituril [7] to peptides digested with pepsin and the ESI-MS spectrum when not.
도 16a 내지 16d는 펩신으로 소화한 펩타이드들에 쿠커비투릴[7]을 첨가한 것과 그렇지 않은 경우의 저에너지 충돌 유도 해리 (Low-energy collision-induced dissociation) 스펙트럼을 나타낸 도면이다.16a to 16d show the addition of cucurbituril [7] to peptides digested with pepsin and low-energy collision-induced dissociation spectra without.
도 17a 내지 17d는 펩신으로 소화한 펩타이드들에 쿠커비투릴[7]을 첨가한 것과 그렇지 않은 경우의 MALDI-MS 스펙트럼을 나타낸 도면이다.17a to 17d show the addition of cucurbituril [7] to peptides digested with pepsin and MALDI-MS spectra without.
도 18은 IM-MS를 사용하여 쿠커비투릴[7]·펩타이드 복합체 구조를 조사한 개략도를 도시한 도면이다.Fig. 18 is a schematic diagram showing the structure of a cucurbituril [7] peptide complex using IM-MS.
도 19는 쿠커비투릴[7]과 복합체화된 것과 그렇지 않은 유비퀴틴4-15 펩타이드 이온의 단편화 경로를 도시한 개략도이다.FIG. 19 is a schematic diagram illustrating the fragmentation pathway of ubiquitin4-15 peptide ions complexed with cucurbituril [7] and not.
이하, 본 발명을 보다 상세하게 설명한다.Hereinafter, the present invention will be described in more detail.
전술한 바와 같이, 단당류들은 동일한 질량과 매우 유사한 구조로 인해 정성 및 정량 분석이 어렵다는 문제가 있으며, 종래 단당류의 정성 및 정량 분석 기술들은 단당류들의 유도체화 혹은 에너지-분해 MS(ERMS)와 같은 다수의 실험이 추가적으로 요구되는 단점이 있었으며, 단당류의 혼합물들의 분석을 위해 추가로 컬럼 혹은 단당류들의 유도체화가 필요하다는 단점이 있다.As described above, monosaccharides have a problem in that qualitative and quantitative analysis is difficult due to the same mass and very similar structure, and conventional qualitative and quantitative analysis techniques of monosaccharides have many problems such as derivatization or energy-degrading MS (ERMS) of monosaccharides. There was a disadvantage that additional experiments were required, and additionally, derivatization of columns or monosaccharides was required for the analysis of mixtures of monosaccharides.
이에, 본 발명에서는 쿠커비투릴[7]과 단당류의 기체상 주인-손님 상호작용에 따라 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온을 형성시킨 후, 이중질량분석법(Tandem Mass Spectrometry, MS2)을 이용하여 단당류들을 쉽고 빠르게 정성 분석할 수 있을 뿐만 아니라, 단당류의 상대 정량 및 절대 정량이 가능한 효과적인 단당류의 정성 및 정량 분석 방법을 제공하고자 한다.Accordingly, in the present invention, after forming a cucurbituril [7] -monosaccharide complex ion in which ammonium ions are bonded according to the gas phase owner-guest interaction of cucurbituril [7] and monosaccharides, Tandem Mass Spectrometry (MS 2 ) In addition to the qualitative analysis of monosaccharides easily and quickly, it is intended to provide an effective method for qualitative and quantitative analysis of monosaccharides, which enables relative and absolute quantification of monosaccharides.
도 1은 본 발명에 따른 단당류의 정성 및 정량 분석방법을 개략적으로 나타낸 도면이다.1 is a view schematically showing the qualitative and quantitative analysis of monosaccharides according to the present invention.
도 1을 참조하면, 본 발명에 따른 단당류의 정성 및 정량 분석방법은 (a) 단당류 수용액에 쿠커비투릴[7] 및 암모늄염을 혼합하는 단계; (b) 상기 혼합물을 전자분무이온화(electrospray ionization) 방법으로 이온화시켜 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온을 형성하는 단계; 및 (c) 상기 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온을 이중질량분석법(Tandem mass spectrometry)을 이용하여 정성 및 정량 분석하는 단계;를 포함한다.Referring to Figure 1, the qualitative and quantitative analysis of monosaccharides according to the present invention comprises the steps of: (a) mixing a cucurbituril [7] and an ammonium salt in a monosaccharide solution; (b) ionizing the mixture by electrospray ionization to form ammonium ions-linked cucurbituril [7] -monosaccharide complex ions; And (c) qualitatively and quantitatively analyzing the cucurbituril [7] -monosaccharide complex ion to which ammonium ions are bound by using dual mass spectrometry.
이때, 상기 단당류는 당업계에 공지된 단당류라면 특별히 한정되지 않으나 바람직하게는 갈락토오스(Galactose, Gal), 글루코오스(Glucose, Glc), 프럭토오스(Fructose, Fru), 만노오스(Mannose, Man), 알로오스(Allose, All), 알트로오스(Altrose, Alt), 굴로오스(Gulose, Gul), 탈로오스(Talose, Tal), 사이코오스(Psicose, Psi), 소르보오스(Sorbose, Sor), 타카토오스(Tagatose, Tag), 이도오스(Idose, Ido)으로 이루어진 군에서 선택될 수 있다.At this time, the monosaccharide is not particularly limited as long as it is known in the art, but preferably galactose (Galactose, Gal), glucose (Glucose, Glc), fructose (Fructose, Fru), mannose (Mannose, Man), allo Allose, All, Altrose, Alt, Gulose, Gul, Talos, Tal, Psicose, Psi, Sorbose, Sor, Takato It may be selected from the group consisting of (Tagatose, Tag), Idoose (Idose, Ido).
또한, 상기 암모늄염은 암모늄 이온을 포함하는 염이라면 이에 제한되는 것은 아니지만, 바람직하게는 아세트산암모늄, 염화암모늄, 탄산암모늄, 수산화암모늄으로 이루어진 군에서 선택되는 1종 이상일 수 있다.In addition, the ammonium salt is not limited thereto as long as it includes a salt containing ammonium ions, preferably may be one or more selected from the group consisting of ammonium acetate, ammonium chloride, ammonium carbonate, ammonium hydroxide.
또한, 상기 (b) 단계의 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온은 전자분무이온화에 의해 단당류 수용액에 포함된 용매가 증발하면서 쿠커비투릴과 단당류의 기체상 주인-손님 상호작용에 의해 두 개의 암모늄 이온, 쿠커비투릴[7] 및 단당류가 복합체 이온을 형성한다.In addition, the cucurbituril [7] -monosaccharide complex ion to which the ammonium ion is bound in step (b) is separated by the gas phase owner-guest interaction between the cucurbituril and the monosaccharide while the solvent contained in the monosaccharide solution is evaporated by electrospray ionization. Ammonium ions, cookerbituryl [7] and monosaccharides form complex ions.
또한, 상기 (a) 단계의 단당류 수용액, 쿠커비투릴[7] 및 암모늄염의 농도비는 1:1.5:3 내지 1:6:12인 것이 바람직하다. 이때, 상기 농도비가 상기 하한치 미만이면 결합하지 않는 단당류가 많아 정량에 문제될 수 있고, 상기 상한치를 초과하면 단당류가 결합되지 않은 쿠커비투릴[7] 이온이 많아져 복합체 이온 측정에 문제가 될 수 있다.In addition, the concentration ratio of the monosaccharide aqueous solution, cucurbituril [7] and the ammonium salt of step (a) is preferably 1: 1.5: 3 to 1: 6: 12. In this case, when the concentration ratio is less than the lower limit, there are many monosaccharides that do not bind, which may cause a problem in quantification. When the concentration ratio exceeds the upper limit, there may be a problem in measuring complex ions due to the increase in the number of cucurbituril ions to which the monosaccharide is not bound.
또한, 본 발명에 따른 단당류의 정성 및 정량 분석은 상기 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온으로부터 생성된 조각 이온(fragment ion)들의 질량/전하(m/z)의 비에 따른 이온량 비율을 분석하는 단계;를 통해 수행될 수 있다. 이때, 상기 단당류를 정성 분석할 시에는 단당류 별로 형성된 암모늄 이온이 결합된 쿠커비투릴[7]-단당류 복합체 이온들로부터 생성된 각각의 조각 이온(fragment ion)들의 질량/전하(m/z)의 비에 따른 이온량 비율을 비교하여 단당류를 구별하게 된다.In addition, the qualitative and quantitative analysis of the monosaccharide according to the present invention is based on the ratio of the mass / charge (m / z) of the fragment ions (fragment ions) generated from the cucurbituril [7] -monosaccharide complex ion to which the ammonium ion is bound Analyzing the ratio; may be performed through. At this time, when qualitatively analyzing the monosaccharides, the ratio of the mass / charge (m / z) of the fragment ions generated from the cucurbituril [7] -monosaccharide complex ions to which ammonium ions are formed per monosaccharide is bound. By comparing the ionic content ratio according to the monosaccharides will be distinguished.
또한, 상기 단당류를 정량 분석할 시에는 상기 (a) 단계의 단당류 수용액은 분석대상 단당류와 내부표준물질로 선정된 단당류가 혼합되어 있으며, 하기 실시 예에서 설명하는 바와 같이 내부표준법(internal standard method)을 통해 도출한 검정 곡선을 통해 분석대상 단당류를 정량화할 수 있다. 이때, 상기 내부표준물질로 선정된 단당류는 체내에 거의 존재하지 않으며, 절대량을 알고 있는 단당류로서 반드시 이에 제한되는 것은 아니지만 알로오스(Allose, All), 알트로오스(Altrose, Alt), 굴로오스(Gulose, Gul), 탈로오스(Talose, Tal)로 이루어진 군에서 선택될 수 있다.In addition, when the monosaccharide is quantitatively analyzed, the monosaccharide solution of step (a) is mixed with the analyte monosaccharide and a monosaccharide selected as an internal standard, and is described in the following Examples. Analytical monosaccharides can be quantified through the test curve derived from. In this case, the monosaccharide selected as the internal standard is hardly present in the body, and the monosaccharide is known to know the absolute amount, but is not necessarily limited thereto. Allose, All, Altrose, Alt, and Gulose ( Gulose, Gul), Talose (Talose, Tal) can be selected from the group consisting of.
또한, 본 발명은 분석대상 단당류가 혼합되어 있는 경우에는 각 단당류별로 정량화 할 수 있는데, 이때 상기 (a) 단계의 단당류 수용액은 서로 다른 복수의 분석대상 단당류가 혼합되어 있으며, 하기 실시 예에서 설명하는 바와 같이 표준 첨가법(standard addition method)을 통해 도출한 검정 곡선을 통해 분석대상 단당류를 각각 정량화할 수 있다. In addition, the present invention can be quantified for each monosaccharide when the analyte monosaccharide is mixed, wherein the aqueous monosaccharide solution of step (a) is mixed with a plurality of different analyte monosaccharides, which will be described in the following examples. As described above, the assay curve derived through the standard addition method can be used to quantify the analyte monosaccharides.
또한, 본 발명에서는, 쿠커비투릴[7]과 N-말단 페닐알라닌 잔기를 갖는 펩타이드 사이의 선택적 비공유결합 상호작용을 통해서, 질량분석법 상에서 잘 검출이 되지 않는 펩타이드들의 분석능을 향상시키기 위한 방법을 제공한다. 이러한 주인-손님 화학을 이용해서 신호 강화를 도모한 본 발명에 따른 방법은, ESI-MS 및 MALDI-MS 모두에 적용가능하며, 펩신 소화 과정을 포함하는 단백질 분석에 특히 탁월한 효과를 나타내는바, 이는 펩신이 페닐알라닌을 포함하는 비극성 부위들을 선호적으로 절단하기 때문이다. 본 발명에서는, 쿠커비투릴[7]의 이러한 신호 강화 효과를 이용하여 인슐린 B-사슬 (InsB; 3.4 kDa), 인슐린 (Ins; 5.8 kDa), 유비퀴틴 (Ubq; 8.6 kDa), 및 미오글로빈 (Myb; 17.0 kDa)의 분석을 수행하였다. 더 나아가, 본 발명에 따르면, 이중 질량분석 실험의 경우, 쿠커비투릴[7]과 결합된 펩타이드들의 서열 커버리지가 개선되었다. 따라서, 본 발명에서는 쿠커비투릴[7]에 의한 신호 강화 및 개선된 서열 커버리지를, 전하 안정화 특성에 기초하여 분석하였는바, 펩타이드 중 특정 잔기들을 표적화하고 포획함으로써 질량분석법을 사용하여 이를 분석함에 있어서 효과적인 접근방법을 제공할 수 있음을 시사하였고, 또한 주인 분자에 의해서 유도되는 폴리펩타이드의 새로운 단편화 경로에 대한 기작을 제안하였다.In addition, the present invention provides a method for improving analytical performance of peptides that are hardly detected on mass spectrometry through selective non-covalent interactions between a cucurbituril [7] and a peptide having an N-terminal phenylalanine residue. The method according to the present invention, which promotes signal enrichment using such master-guest chemistry, is applicable to both ESI-MS and MALDI-MS, and has a particularly excellent effect on protein analysis including pepsin digestion process. This is because pepsin preferentially cleaves non-polar sites containing phenylalanine. In the present invention, this signal potentiating effect of cucurbituril [7] is used to utilize insulin B-chain (InsB; 3.4 kDa), insulin (Ins; 5.8 kDa), ubiquitin (Ubq; 8.6 kDa), and myoglobin (Myb; 17.0 kDa). Analysis was performed. Furthermore, according to the present invention, the sequence coverage of peptides associated with cucurbituril [7] was improved for double mass spectrometry experiments. Accordingly, in the present invention, signal enhancement and improved sequence coverage by cucurbituril [7] were analyzed based on charge stabilization properties, and thus an effective approach in analyzing them using mass spectrometry by targeting and capturing specific residues of peptides. It suggested that a method could be provided, and also proposed a mechanism for a novel fragmentation pathway of polypeptides induced by the host molecule.
따라서, 본 발명에서는,Therefore, in the present invention,
a) 펩타이드 용액에 쿠커비투릴[7]을 혼합하여 펩타이드-쿠커비투릴[7] 복합체를 형성하는 단계; 및 b) 상기 복합체를 질량분석법에 의해서 분석하는 단계를 포함하는, 쿠커비투릴[7]을 이용한 펩타이드의 정성 및 정량 분석방법을 제공한다.a) mixing a cucurbituril [7] with a peptide solution to form a peptide-cookerbituril [7] complex; And b) provides a method for qualitative and quantitative analysis of the peptide using cucurbituril [7] comprising the step of analyzing the complex by mass spectrometry.
본 발명에서, 펩타이드-쿠커비투릴[7] 복합체는 상기 펩타이드의 N-말단 페닐알라닌 잔기와 쿠커비투릴[7] 사이의 소수성 상호작용 및 이온-쌍극자 상호작용에 의해서 형성될 수 있으며, 본 발명에서 분석이 가능한 펩타이드는, 펩신에 의해서 소화가능한 다양한 펩타이드들로서, 이에 제한되는 것은 아니지만, 예를 들어 인슐린, 인슐린의 B-사슬, 유비퀴틴, 미오글로빈 및 그 혼합물로 이루어진 군으로부터 선택된 다양한 펩타이드들을 예로 들 수 있다.In the present invention, the peptide-cookerbituryl [7] complex may be formed by hydrophobic interaction and ion-dipole interaction between the N-terminal phenylalanine residue and the cucurbituril [7] of the peptide, and may be analyzed in the present invention. Is a variety of peptides digestible by pepsin, for example, but not limited to various peptides selected from the group consisting of insulin, B-chain of insulin, ubiquitin, myoglobin and mixtures thereof.
또한, 본 발명에 따른 정성 및 정량 분석방법은, 다양한 질량분석법 기반의 방법들에 적용가능한 바, 예를 들어, 전자분무 이온화 질량분석법 (ESI-MS), 기질-보조 레이저 탈착 이온화 질량분석법 (MALDI-MS), 이온 이동도 질량분석법 (IM-MS), 또는 충돌 유도 해리 (collision-induced dissociation)를 바탕으로 한 이중 질량분석법 (tandem mass spectrometry) 등의 다양한 질량분석법 기반 방법들에 적용될 수 있다.In addition, the qualitative and quantitative analysis methods according to the present invention are applicable to various mass spectrometry based methods, for example, electrospray ionization mass spectrometry (ESI-MS), substrate-assisted laser desorption ionization mass spectrometry (MALDI). -MS), ion mobility mass spectrometry (IM-MS), or tandem mass spectrometry based on collision-induced dissociation.
한편, 상기 a) 단계에서 펩타이드 용액과 쿠커비투릴[7]의 혼합비는 상기 펩타이드 용액 100 중량부에 대해서 상기 쿠커비투릴[7] 10 중량부 내지 1000 중량부일 수 있는 바, 쿠커비투릴[7]의 함량이 10 중량부 미만인 경우에는 펩타이드와의 복합체 형성이 효율적이지 않을 수 있다는 문제점이 있고, 1000 중량부를 초과하는 경우에는 여분의 쿠커비투릴[7]이 이온화되는 문제점이 있어서 바람직하지 않다.Meanwhile, the mixing ratio of the peptide solution and the cucurbituril [7] in step a) may be 10 parts by weight to 1000 parts by weight of the cucurbituril [7] with respect to 100 parts by weight of the peptide solution, and the content of cucurbituril [7] is 10 parts by weight. If it is less than the portion, there is a problem that complex formation with the peptide may not be efficient, and if it exceeds 1000 parts by weight, there is a problem that extra cooker bituril [7] is ionized, which is not preferable.
이하에서는 바람직한 실시 예 등을 들어 본 발명을 더욱 상세하게 설명한다. 그러나 이들 실시 예 등은 본 발명을 보다 구체적으로 설명하기 위한 것으로, 본 발명의 범위가 이에 의하여 제한되지 않는다는 것은 당업계의 통상의 지식을 가진 자에게 자명할 것이다.Hereinafter, the present invention will be described in more detail with reference to preferred embodiments. However, these examples and the like are intended to describe the present invention in more detail, and it will be apparent to those skilled in the art that the scope of the present invention is not limited thereto.
단당류의 정성 및 정량 분석Qualitative and quantitative analysis of monosaccharides
재료material
D-형 단당류(D-Gal, D-Glc, D-Fru, D-Man, D-All, D-Alt, D-Tal), L-형 단당류(L-Gul), 쿠커비투릴[7], 아세트산암모늄, 아세트산리튬, 아세트산소듐, 아세트산포타슘은 시그말 알드리치(St. Louis, MO, USA)로 부터 구입하였다. 용매로서 Avantor Performance Materials, Inc.(Center Vallet, PA, USA)에서 구입한 HPLC-등급 물을 사용하였으며, 단당류의 스톡 용액은 100 mM 이상 준비하였으며, 스톡 용액의 정확한 농도는 핵자기공명 분광법(nuclear magnetic resonance spectroscopy)을 이용하여 결정하였다.D-type monosaccharides (D-Gal, D-Glc, D-Fru, D-Man, D-All, D-Alt, D-Tal), L-type monosaccharides (L-Gul), cucurbituril [7], acetic acid Ammonium, lithium acetate, sodium acetate and potassium acetate were purchased from Sigmal Aldrich (St. Louis, MO, USA). HPLC-grade water purchased from Avantor Performance Materials, Inc. (Center Vallet, PA, USA) was used as a solvent, and a stock solution of monosaccharides was prepared at least 100 mM, and the exact concentration of the stock solution was determined by nuclear magnetic resonance spectroscopy. magnetic resonance spectroscopy).
등온 적정 열량 측정계 (Isothermal calorimetry calorimetry, ITC) 측정Isothermal calorimetry (ITC) measurement
모든 ITC 실험은 25 ℃에서 VP-ITC 열량 측정계(Microcal, Northampton, MA, USA)를 사용하여 측정하였다. ITC 셀 내의 0.4 mM의 CB[7] 용액을 10 mM의 단당류 수용액이 함유된 시린지로 적정하였다. 실험 전에 솔루션 용액을 탈기하였으며, 주사 수는 40 회였고, 주입량은 6 μL였다. 초기 평형 시간은 1000 s, 주입 간격은 300 s였다. All ITC experiments were measured using a VP-ITC calorimetry (Microcal, Northampton, MA, USA) at 25 ° C. 0.4 mM CB [7] solution in ITC cells was titrated with a syringe containing 10 mM aqueous solution of monosaccharides. The solution solution was degassed before the experiment, the number of injections was 40 and the injection volume was 6 μL. Initial equilibration time was 1000 s and injection interval was 300 s.
이중질량분석법Double mass spectrometry
단당류 분석을 위한 이중질량분석(Tandem MS, MS2) 실험은 ESI 소스를 갖춘 Thermo Scientific LTQ Velos 이중 이온 트랩 질량 분광계(San Jose, CA, USA)를 사용하여 수행하였다. 분무 전압은 3.5 kV, 모세관의 온도는 300 ℃, 차단 가스의 흐름(sheath gas flow)은 18(arbitrary units)이었다. CB[7]의 농도는 150 μM, 암모늄 염과 금속 염의 농도는 300 μM이었다. 각 단당류의 정량 분석을 위한 D-allose의 농도는 20 μM으로 조정하였다. 내부표준법에 의한 정량 시의 정규화된 충돌에너지(CENorm) 및 표준첨가법에 의한 정량 시의 정규화된 충돌에너지(CENorm) 값은 각각 15%와 18%로 설정하였다. Dual mass spectrometry (Tandem MS, MS 2 ) experiments for monosaccharide analysis were performed using a Thermo Scientific LTQ Velos Dual Ion Trap Mass Spectrometer (San Jose, CA, USA) with an ESI source. The spray voltage was 3.5 kV, the temperature of the capillary was 300 ° C., and the sheath gas flow was 18 (arbitrary units). The concentration of CB [7] was 150 μM and the concentrations of ammonium and metal salts were 300 μM. The concentration of D-allose for quantitative analysis of each monosaccharide was adjusted to 20 μM. Normalized collision energy (CE Norm) value at the time of content by normalized collision energy (CE Norm) and the standard addition method at the time of content by the internal standard method was set at 15% and 18%, respectively.
고해상도 질량분석 실험은 Thermo Q-Exactive Orbitrap 질량 분석기로 수행하였다. 분무 전압은 4.00 kV, 모세관의 온도는 200 ℃이었다. 이온 이동도 측정 실험은 Z-spray ESI 소스를 갖춘 Synapt G2 HDMS 질량 분석기(Waters, Manchester, U.K.)를 사용하였다. 모세관, 샘플링 콘, 추출 콘 전압은 각각 2.00 kV, 20 V, and 2.00 V 이었으며, 소스 및 탈용매 온도는 각각 100, 150 ℃였다. 헬륨의 IMS 셀의 가스 흐름은 각각 180 mL/min 과 60 mL/min였으며, 전파 속도 및 높이는 각각 280 m/s, 13 V였다. 또한, 충돌 단면에 대한 도착 시간을 보정하기 위하여 폴리아닐린을 사용하였다. High resolution mass spectrometry experiments were performed with a Thermo Q-Exactive Orbitrap mass spectrometer. The spraying voltage was 4.00 kV and the capillary temperature was 200 ° C. Ion mobility measurement experiments were carried out using a Synapt G2 HDMS mass spectrometer with a Z-spray ESI source (Waters, Manchester, U.K.). Capillary, sampling cone, and extraction cone voltages were 2.00 kV, 20 V, and 2.00 V, respectively, and the source and desolvent temperatures were 100 and 150 ° C, respectively. The gas flows of helium IMS cells were 180 mL / min and 60 mL / min, respectively, and the propagation rates and heights were 280 m / s and 13 V, respectively. In addition, polyaniline was used to correct the arrival time for the impact cross section.
분자 역학(Molecular Dynamics, MD) 시뮬레이션 및 밀도함수이론(Density Functional Theory, DFT) 계산Molecular Dynamics (MD) Simulation and Density Functional Theory (DFT) Calculation
모든 MD 시뮬레이션은 Gromacs 4.5.5.(Hess, B. et al. J. Chem . Theory Comput. 2008, 4, 435)을 사용하여 측정하였다. CB[7]과 단당류들의 힘 필드 파라미터(force field parameter)는 CHARMM general force field (CGENFF)으로부터 적응시켰다(Vanommeslaeghe, K. et al. J. Comput. Chem. 2010, 31, 671).All MD simulations were measured using Gromacs 4.5.5. (Hess, B. et al. J. Chem . Theory Comput. 2008 , 4 , 435). The force field parameters of CB [7] and monosaccharides were adapted from the CHARMM general force field (CGENFF) (Vanommeslaeghe, K. et al. J. Comput. Chem. 2010 , 31 , 671).
CB[7]-단당류 복합체 이온들의 초기 기하학적 구조는, CB[7]의 공동 안으로 단당류들을 삽입하기 위하여 Hyperchem 7.5 (Hypercube Inc., Gainesvile, FL, USA)를 사용하여 형성하였으며, 가스 상에서 후보 구조를 획득하기 위하여 시뮬레이티드 어닐링을 수행하였다. 300 어닐링 사이클(90 ns)의 마지막 프레임을 추출하고, 각 복합체 이온 중 다섯 개의 가장 낮은 에너지 구조들에 대한 추가적인 구조 최적화를 수행하였다. 구조의 최적화는 DFT calculations과 Q-Chem4.1 computational package (Q-Chem Inc., Pittsburgh, PA, USA)를 사용하여 수행하였다. 이어서, CB[7]의 공동 내부의 단당류 간의 구조적 차이를 관찰하기 위하여 최α적화된 복합체들에 대하여 600 ℃에서 등온 어닐링을 실시하였다. The initial geometry of the CB [7] -monosaccharide complex ions was formed using Hyperchem 7.5 (Hypercube Inc., Gainesvile, FL, USA) to insert monosaccharides into the cavity of CB [7], forming a candidate structure in the gas phase. Simulated annealing was performed to obtain. The final frame of 300 annealing cycles (90 ns) was extracted and further structural optimization was performed for the five lowest energy structures of each composite ion. Structure optimization was performed using DFT calculations and Q-Chem4.1 computational package (Q-Chem Inc., Pittsburgh, PA, USA). Subsequently, isothermal annealing was performed at 600 ° C. for the optimized α complexes to observe the structural differences between the monosaccharides inside the cavities of CB [7].
단당류 혼합물에서, MSIn monosaccharide mixtures, MS 22 스펙트럼을 통한 단당류의 정량 분석 Quantitative Analysis of Monosaccharides Through Spectrum
먼저, MS2 스펙트럼에서 조각 피크들의 신호를 통합하고, 두 조각(fragment) 피크들(m/z 662.8 and 671.8) 사이의 상대적인 존재 비(abundance ratio)를 획득하였다. Man과 Fru가 혼합된 단당류 혼합 수용액의 경우 m/z 653.8 과 671.8을 정량에 사용하였는데, 이는 Man과 Fru의 m/z 662.8 per 671.8의 존재비가 유사하기 때문이다. 조각 피크들의 신호는 5 σ로 통합하였다. 이후, 하기 식 (1)과 하기 표 1을 사용하여 두 단당류들의 α값을 계산하였다.First, the signal of the fragment peaks in the MS 2 spectrum was integrated and the relative abundance ratio between the two fragment peaks ( m / z 662.8 and 671.8) was obtained. In the case of the mixed solution of monosaccharide mixed with Man and Fru, m / z 653.8 and 671.8 were used for quantification because the abundance ratios of Man and Fru m / z 662.8 per 671.8 were similar. The signal of the fragment peaks was integrated at 5 σ. Then, the α value of the two monosaccharides was calculated using the following equation (1) and Table 1 below.
[식 1][Equation 1]
검정 곡선의 기울기를 이용한 단당류의 정량 분석Quantitative Analysis of Monosaccharides Using the Slope of the Calibration Curve
분석 대상 단당류의 농도는 하기 [식 2]를 이용하여 계산하였으며, 용액 상에서 기준 단당류의 농도를(cRef) 정량하기 위해, 분석대상 단당류와 기준 단당류의 α값의 비율(y=αA/αRef)과 두 단당류의 검정 곡선의 기울기를 이용하였다.The concentration of the analyte monosaccharide was calculated using the following [Equation 2], in order to quantify the concentration of the reference monosaccharide (c Ref ) in the solution, the ratio of the α value of the analyte monosaccharide and the reference monosaccharide (y = α A / α Slope of the calibration curve of Ref ) and two monosaccharides.
[식 2][Equation 2]
또한, 단당류 이원혼합물에서의 두 단당류(A와 B로 표시)를 정량하기 위해, 표준첨가법(Standard addition method)을 기반으로 하기의 [식 3]과 [식 4]를 이용하였다.In addition, in order to quantify the two monosaccharides (denoted A and B) in the monosaccharide binary mixture, the following [Formula 3] and [Formula 4] were used based on the standard addition method.
[식 3][Equation 3]
[식 4][Equation 4]
이때, 상기 추가로 첨가되는 단당류 B의 농도(cB,s)는 10 μM으로 조정하였다.At this time, the concentration (c B, s ) of the monosaccharide B added further was adjusted to 10 μM.
고찰Review
합성 고분자를 이용하는 주인-손님 화학은 때때로 이성체 분자를 구별하기도 하지만(Han, C. et al. Sens . Actuator B- Chem . 2009, 137, 704), 단당류 이성체 구별은 주인-손님 화학에서도 여전히 해결할 과제이다. 그 이유는 단당류와 물 분자 간의 수소 결합이 합성 고분자와 단당류가 결합을 할 경우 끊어지게 되어 에너지적 불이익을 갖게 하기 때문이다. 또한 이러한 강한 비-공유 결합이 존재하는 수용액 상에서는 단당류들 간의 미세한 구조적 차이가 잘 보이지 않을 수 있기 때문이다. 따라서 본 발명에서는 물이 없는 상태에서 단당류 이성체들이 합성 고분자와 결합이 가능할 것이라는 점과 단당류 이성체들 간의 구조적 차이가 기체상에서 합성 고분자인 CB[7]과의 주인-손님 상호작용을 통해 쉽게 표출될 것이라는 점에 착안하여 본 발명을 완성하였다. Although master-guest chemistry using synthetic polymers sometimes distinguishes isomeric molecules (Han, C. et al. Sens . Actuator B- Chem . 2009 , 137 , 704), monosaccharide isomeric distinctions are still a challenge in master-guest chemistry. to be. The reason is that the hydrogen bond between the monosaccharide and the water molecule is broken when the synthetic polymer and the monosaccharide are bonded, resulting in an energy disadvantage. It is also because the fine structural difference between the monosaccharides may not be visible in the aqueous solution in the presence of such strong non-covalent bonds. Therefore, in the present invention, in the absence of water, the monosaccharide isomers will be able to bind with the synthetic polymer, and the structural difference between the monosaccharide isomers will be easily expressed through the owner-guest interaction with the synthetic polymer CB [7] in the gas phase. With this in mind, the present invention has been completed.
본 발명의 분석대상이 되는 단당류들은 반드시 이에 제한되는 것은 아니지만, 인체 내에서 가장 흔한 단당류 이성체로서 D-갈락토오스(Gal), D-글루코오스(Glc), D-만노오스(Man)와 D-프룩토오스(Fru)를 사용하였으며, 먼저 수용액에서 이들과 CB[7]과의 상호작용을 등온 적정 열량 측정계(ITC)를 이용한 열 측정을 통해 조사하였다. 그 결과, 상기 단당류 중 어느 것도 수용액에서 CB[7]과 유의한 상호작용을 나타내지 않았음을 확인하였는바(도 2), 이는 아마도 이들 단당류들이 친수성을 가지며 양이온성 작용기가 없기 때문으로 보여진다(Lee, J. W. et al. J. Phys. Chem. B 2013, 117, 8855). Monosaccharides to be analyzed in the present invention are not necessarily limited thereto, but the most common monosaccharide isomers in the human body are D-galactose (Gal), D-glucose (Glc), D-mannose (Man) and D-fructose. (Fru) was used, and the interaction between them and CB [7] in an aqueous solution was first investigated by thermal measurement using an isothermal titration calorimeter (ITC). As a result, it was confirmed that none of the monosaccharides showed significant interaction with CB [7] in aqueous solution (FIG. 2), probably because these monosaccharides are hydrophilic and have no cationic functional groups ( Lee, JW et al. J. Phys. Chem. B 2013 , 117 , 8855).
이와는 달리 본 발명에서는 전자분무이온화(ESI)를 통해 CB[7]과 단당류 복합체가 형성됨을 확인할 수 있는데(도 3), 이는 ESI 중에 물과 단당류 사이의 상호작용이 제거되고 정전기적 상호작용이 강해져 주인-손님 결합이 증대될 수 있기 때문이다. CB[7]-단당류 복합체는 용액에 첨가되는 염의 유형에 따라 암모늄 이온 또는 알칼리 금속이온과의 양이온화된 형태로서 관찰되었는데, MS2를 수행하여 암모늄 이온 또는 알칼리금속 이온과의 CB[7]-단당류 착물의 쪼개짐 패턴을 조사한 결과(도 4, 도 5), 알칼리 금속이 결합된 복합체는 충돌 활성화시 CB[7]로부터 단당류가 쉽게 분리됨을 보이는 반면에, 서로 다른 단당류의 암모늄 염이 결합된 CB[7]-단당류 복합체 이온은 도 4에 나타낸 바와 같이 이온 트랩 MS(LTQ Velos)에서 광범위한 MS2 파라미터에 걸쳐 뚜렷이 구별되는 쪼개짐 패턴을 나타냄을 확인할 수 있었다. 암모늄 염이 결합한 CB[7]-단당류 복합체 이온의 조각 피크는 주로 암모니아와 물이 빠진 복합체 이온에 부합하는 m/z 680.8, 671.8, 662.8, 653.8, 599.2와 590.7에서 관찰되었다(도 4, 도 6). 대조적으로 CB[7]이 없는 순수한 단당류 이온은 서로 다른 단당류들을 구별하기 어려운 쪼개짐 패턴들을 보여주었다. Gal, Glc와 Man의 양성자화 된 형태들은 매우 비슷한 쪼개짐 패턴을 보였고 암모늄 염과 결합된 Gal과 Man은 공통적으로 비슷한 쪼개짐 패턴을 가졌다(도 7). 이들 결과를 통해 본 발명에 사용된 CB[7]이 기체상에서 단당류 구조의 작은 차이를 증폭하여 뚜렷이 구별되는 쪼개짐 패턴을 수득하고 MS2를 통한 정성 분석을 용이하게 하였음을 알 수 있었다. 또한, 이러한 CB[7]-단당류 복합체 이온의 뚜렷이 구별되는 쪼개짐 패턴은 서로 다른 MS2 방식을 채용하는 서로 다른 3개의 질량 분석기(즉, 이온 트랩, orbitrap과 Q-TOF 질량 분석기)로 관찰하여 관찰의 보편성을 입증하였다(도 6). In contrast, in the present invention, it can be confirmed that CB [7] and monosaccharide complexes are formed through electrospray ionization (ESI) (FIG. 3), which removes the interaction between water and monosaccharides in ESI and enhances electrostatic interaction. For owner-guest union can be increased. CB [7] -monosaccharide complexes were observed as cationized forms with ammonium ions or alkali metal ions, depending on the type of salt added to the solution, by performing MS 2 to CB [7]-with ammonium ions or alkali metal ions. Investigation of the cleavage pattern of monosaccharide complexes (FIGS. 4 and 5) shows that the complexes bound to alkali metals readily show the separation of monosaccharides from CB [7] upon collision activation, whereas the CBs bound to ammonium salts of different monosaccharides As shown in FIG. 4, the [7] -monosaccharide complex ion exhibited a cleavage pattern that was clearly distinguished over a wide range of MS 2 parameters in the ion trap MS (LTQ Velos). Fragment peaks of CB [7] -monosaccharide complex ions bound by ammonium salts were observed at m / z 680.8, 671.8, 662.8, 653.8, 599.2 and 590.7, which correspond mainly to ammonia and water-depleted complex ions (FIGS. 4 and 6). ). In contrast, pure monosaccharide ions without CB [7] showed cleavage patterns that were difficult to distinguish between different monosaccharides. Protonated forms of Gal, Glc and Man showed very similar cleavage patterns and Gal and Man combined with ammonium salts had similar cleavage patterns in common (FIG. 7). These results show that CB [7] used in the present invention amplifies small differences in monosaccharide structure in the gas phase, yielding distinctive cleavage patterns and facilitating qualitative analysis through MS 2 . In addition, these distinct cleavage patterns of CB [7] -monosaccharide complex ions were observed by three different mass spectrometers (ie, ion traps, orbitrap and Q-TOF mass spectrometers) employing different MS 2 methods. Universality was demonstrated (FIG. 6).
또한, 본 발명에서는 상술한 바와 같이 CB[7]을 이용하여 단당류를 정성적으로 구별할 수 있을 뿐만 아니라 단당류의 정량 분석을 가능하게 한다. 구체적으로, 암모늄 염이 결합된 CB[7]-단당류 복합체 이온의 혼합물의 쪼개짐 패턴은 복합체 이온 각각의 조각화 패턴의 선형 조합으로 분리될 수 있다. 그러나 이러한 선형 분리로부터 얻어진 각 단당류들의 복합체 이온의 비는 MS에서 관찰되는 용액에서의 결합성과 기체상에서의 결합성 모두에 의해 영향을 받기 때문에 용액에서의 단당류의 비와 반드시 일치하는 것은 아니라는 점에 주목해야 한다. 본 발명에 따른 ESI 중 결합 현상의 복잡성은 단당류가 용액에서 CB[7]과 거의 상호작용하지 않았기 때문에 크게 감소되었다. 이에 따라, 용액 중에 존재하는 단당류의 비와 기체상에서 복합체 이온으로 나타나는 단당류의 비 사이에서 단순한 관계를 찾을 수 있다. 본 발명에서는 천연 단당류에 비해 MS2에서 뚜렷이 구별되는 쪼개짐 패턴을 보인 비천연 단당류 표준으로서 D-알로오스(All)를 내부표준물질로 사용하였으며, 이와 함께 단당류 이성체의 정량 분석을 위해 CB[7] 복합체의 뚜렷이 구별되는 쪼개짐 패턴을 활용하였다(도 13). 5개 단당류(4개는 분석대상이고 1개는 내부표준물질임)의 쪼개짐 피크의 상대 존재(relative abundance)는 상기 표 1에 나타낸 바와 같다. In addition, in the present invention, as described above, the monosaccharides can be qualitatively distinguished using CB [7], and quantitative analysis of the monosaccharides is possible. Specifically, the cleavage pattern of the mixture of CB [7] -monosaccharide complex ions bound to ammonium salts can be separated by a linear combination of fragmentation patterns of each of the complex ions. It is noted, however, that the ratio of the complex ions of each of the monosaccharides obtained from this linear separation is not necessarily consistent with the ratio of monosaccharides in solution since it is affected by both the binding in the solution and the binding in the gas phase observed in MS. Should be. The complexity of the binding phenomena in ESI according to the present invention was greatly reduced because monosaccharides rarely interacted with CB [7] in solution. Accordingly, a simple relationship can be found between the ratio of monosaccharides present in solution and the ratio of monosaccharides present as complex ions in the gas phase. In the present invention, D-allose (All) was used as an internal standard as a non-natural monosaccharide standard showing a distinct pattern of cleavage in MS 2 compared to natural monosaccharides, and CB [7] for quantitative analysis of monosaccharide isomers. A distinctive cleavage pattern of the complex was utilized (FIG. 13). The relative abundance of the cleavage peaks of five monosaccharides (four are analyte and one internal standard) is shown in Table 1 above.
한편, 정규화된 충돌 에너지(CENorm
.)의 15% 조건에서 완전한 조각화가 관찰되었기 때문에 이 조건을 MS2 실험 중에 이용하였다. 분석할 단당류와 내부표준물질인 단당류의 혼합물에서 MS2 스펙트럼에 있는 쪼개짐 피크의 상대 존재는 하기 식 1에 나타낸 바와 같은 관계식을 따른다:On the other hand, this condition was used during MS 2 experiments because complete fragmentation was observed at 15% of normalized collision energy (CE Norm . ). The relative presence of cleavage peaks in the MS 2 spectrum in a mixture of monosaccharides to be analyzed and the monosaccharide as an internal standard follows the relationship shown in
[식 1][Equation 1]
상기 [식 1]에서 αA과 αRef은 각각 복합체 이온으로서 존재하는 분석할 단당류와 내부표준물질(기준)로 선정된 단당류의 분율을 나타낸다. RA, RRef과 RMix는 각각 분석대상이 되는 단당류 복합체 이온, 내부표준물질로 선정된 단당류 복합체 이온과 단당류 복합체 이온의 혼합물의 MS2 스펙트럼에 있는 2개의 쪼개짐 피크의 상대 존재(R = IA/IB)를 나타낸다. 본 연구에서 m/z 662.8과 671.8에서의 피크는 가장 재현성 있는 결과를 제공하였기 때문에 각각의 단당류를 정량화하기 위해 이들 피크를 선택하였다.In
본 발명에서는 상기 [식 1]을 이용하여 10-100 μM 범위의 분석할 단당류를 정량화하기 위해서 단당류 착물의 기체상 분율 αA과 αRef를 얻었다. αA과 αRef의 비는 용액 중 분석대상 단당류와 내부표준물질로 선정된 단당류의 농도의 비에 비례하였음을 확인하였다. 도 8a는 용액 중 단당류의 비와 기체상에서 암모늄 이온과 결합된 CB[7]-단당류 복합체 이온의 단당류의 비 사이에 선형 관계가 있음을 보여주고 있다. Gal, Glc, Man과 Fru에 대한 검정 곡선의 기울기는 각각 0.489, 0.345, 0.631과 0.189로 높은 선형성(R2=0.999)을 보였다. 또한 4개 단당류의 검출 한계(LOD)와 정량 한계(LOQ)는 각각 0.46-0.90 g/mL와 1.39-2.72 g/mL로(표 2 참조), 본 발명에 따른 분석방법이 인체 내 소량의 단당류의 농도를 결정하기에 매우 적합한 방법임을 암시한다. In the present invention, the gas phase fractions α A and α Ref of the monosaccharide complexes were obtained to quantify the monosaccharides to be analyzed in the range of 10-100
본 발명에서는 2 성분 단당류 혼합용액에서의 단당류의 정량을 위해 혼합물 내 단당류 중 하나를 표준물질로서 분석대상 용액에 첨가하는 것을 포함하는 실험으로부터 분석대상의 농도를 추론하는 표준물질 첨가방법을 기반으로 MS2 실험을 수행하였다. 이때, MS2(LTQ Velos) 중 CENorm .을 18%로 설정하였으며, 먼저 각각의 천연 단당류와 알로오스(All)로부터 얻은 관계(도 8a)와 유사한 2개 단당류의 비 사이의 관계(도 8b)를 얻었다. 다음, 혼합물 중 2개 단당류(A와 B로 표시)의 값을 상기 [식 3]을 이용하여 계산함으로써 상기 단당류의 농도 비를 얻었다. 이 방법을 이용하여 2개 단당류의 혼합물 농도를 하기 표 3과 4에 나타낸 바와 같이 매우 정확하게 계산할 수 있었다. In the present invention, MS is based on a method of adding a standard to infer the concentration of the analyte from an experiment including adding one of the monosaccharides in the mixture as a standard to the analyte solution for quantification of the monosaccharide in the bicomponent monosaccharide mixed solution Two experiments were performed. At this time, CE Norm in MS 2 (LTQ Velos) . Was set to 18%, and a relationship between each of the natural monosaccharides and the ratio of two monosaccharides similar to that obtained from Allose (All) (Fig. 8a) was obtained (Fig. 8b). Next, the concentration ratio of the said monosaccharide was obtained by calculating the value of two monosaccharides (indicated by A and B) in the mixture using the above [Formula 3]. Using this method, the mixture concentration of two monosaccharides could be calculated very accurately as shown in Tables 3 and 4 below.
aM indicates monosaccharides, Gal, Man, and Fru. a M indicates monosaccharides, Gal, Man, and Fru.
한편, CB[7] 내부에서의 단당류의 서로 다른 주인-손님 상호작용을 이해하기 위해서 암모늄 이온이 결합된 CB[7]-단당류 복합체 이온의 구조적 특성을 기체상 이온의 전체 구조 정보를 제공할 수 있는 이온 이동도 MS(Synapt G2 HDMS)를 이용하여 분석하였다. 복합체 이온의 도달시간은 복합체를 형성하지 않은 암모늄 염이 결합된 CB[7] 이온의 도달시간과 거의 동일함을 확인하였으며, 이를 통해 단당류가 CB[7] 공동 안에 존재함을 확인하였다(도 9). 또한, 분자 역학(MD) 시뮬레이션과 밀도 함수 이론(DFT) 계산을 이용한 전산 모델링을 통해 상기 단당류가 진공에서 CB[7] 공동 내에 존재하고 있음을 확인하였다(도 9). 더 나아가 CB[7] 안에서 단당류 각각의 기하구조는 뚜렷이 구별되는바, 이는 서로 다른 단당류가 CB[7]과 서로 다르게 상호작용을 함을 추정할 수 있다. On the other hand, in order to understand the different master-guest interactions of monosaccharides inside CB [7], the structural characteristics of CB [7] -monosaccharide complex ions bound to ammonium ions can provide the overall structural information of gas phase ions. Ion mobility MS was analyzed using Synapt G2 HDMS. It was confirmed that the arrival time of the complex ion was almost the same as the arrival time of the CB [7] ion to which the ammonium salt, which did not form a complex, was found to be present in the CB [7] cavity (FIG. 9). ). In addition, computational modeling using molecular dynamics (MD) simulations and density function theory (DFT) calculations confirmed that the monosaccharides were present in the CB [7] cavity in vacuum (FIG. 9). Furthermore, the geometries of monosaccharides in CB [7] are distinctly distinct, suggesting that different monosaccharides interact differently from CB [7].
다음으로, 열적으로 활성화된 기체상에서의 CB[7] 내 단당류들의 기하구조를 관찰하기 위해 등온 어닐링 시뮬레이션을 600 K에서 150 ns 동안 수행하였다. 착물 이온의 기하구조들을 취합해본 결과, 단당류 각각이 CB[7] 공동 안에서 허용되는 서로 다른 위치에 존재함을 확인할 수 있었다. 당류 히드록실기와 CB[7]의 중심 면 사이의 거리와 각도는 하기 도 10과 도 11에 나타내었다. 도 10 및 도 11에 나타난 바와 같이 단당류의 C6에 결합되어 있는 히드록실기의 배향은 열적 활성화 조건에서도 상이하였으며, C2에 결합되어 있는 히드록실기를 제외한 다른 모든 히드록실기에 대해서도 동일한 경향을 보였다. α형 Glc와 Man의 C2에 결합되어 있는 히드록실기의 경우 서로 유사한 배형을 보였으나 도 12에서 볼 수 있듯이 C2에 결합되어 있는 히드록실기를 제외한 나머지 모든 히드록실기가 서로 다르게 배치되어 있어 CB[7] 내에서 α형 Glc와 Man 역시 다르게 존재함을 확인할 수 있었다.Next, an isothermal annealing simulation was performed at 600 K for 150 ns to observe the geometry of the monosaccharides in CB [7] in the thermally activated gas phase. Gathering the complex ions' geometries, it was confirmed that each of the monosaccharides existed at different positions within the CB [7] cavity. The distance and angle between the saccharide hydroxyl group and the central plane of CB [7] are shown in FIGS. 10 and 11 below. As shown in FIGS. 10 and 11, the orientation of the hydroxyl groups bonded to C6 of the monosaccharide was different under thermal activation conditions, and the same tendency was observed for all other hydroxyl groups except for the hydroxyl groups bonded to C2. . The hydroxyl groups bonded to C2 of α-type Glc and Man showed similar embryonic shapes, but as shown in FIG. 12, all hydroxyl groups except C-linked hydroxyl groups were arranged differently from each other. It can be seen that α-type Glc and Man also exist differently in [7].
이상 살펴본 바와 같이, 본 발명에 따른 쿠커비투릴[7]을 이용한 단당류의 정성 및 정량 분석방법을 이용하면, 종래 기술의 문제점으로 지적되었던 유도체화와 같은 별도의 시료 처리 없이도 단당류들을 쉽고 빠르게 구별할 수 있을 뿐만 아니라 단당류의 상대 정량 및 절대 정량을 가능하게 하는 효과가 있어 단당류의 분석 시간 및 비용을 획기적으로 감소시킬 수 있다.As described above, the qualitative and quantitative analysis of the monosaccharides using the cucurbituril [7] according to the present invention can easily and quickly distinguish monosaccharides without separate sample processing such as derivatization, which has been pointed out as a problem of the prior art. In addition, the effect of enabling relative and absolute quantification of monosaccharides can significantly reduce the analysis time and cost of monosaccharides.
펩타이드의Peptide 정성 및 정량 분석 Qualitative and quantitative analysis
재료material
InsB는 Anygen (Gwangju, Korea)으로부터 구입하였다. 인간 재조합 Ins, 소 적혈구로부터의 Ubq, 말 심장으로부터의 Myb, 돼지 위 점막으로부터의 펩신, 및 포름산은 Sigma-Aldrich (St. Louis, MO, USA)로부터 구입하였다. HPLC-급 물 및 아세토니트릴은 Avantor Performance Materials, Inc. (Center Valley, PA, USA)로 구입하였으며, 용매로서 사용하였다. 쿠커비투릴[7]은 CBTECH (Pohang, Korea)으로부터 구입하였으며, 쿠커비투릴[7]을 물에 용해시킴으로써 스톡 용액 (1 mM)을 제조하였다. 펩신 소화물은 1% v/v 포름산을 함유하는 물 중에서, 37℃로 15분 동안 단백질 (100 μM)을 펩신 (0.24 mg/mL)과 함께 배양함으로써 제조하였다. ESI-MS에서는 위 시료를 10배 희석하여 사용하였다. 이어서, 쿠커비투릴[7]을 상기 용액에 첨가하고, 상기 용액에 대해서 ESI-MS 분석을 수행하였다. 쿠커비투릴[7]의 농도는 10 μM의 InsB, Ins, Ubq, 및 Myb 각각에 대해서 50, 35, 100, 및 50 μM로 최적화하였다.InsB was purchased from Anygen (Gwangju, Korea). Human recombinant Ins, Ubq from bovine erythrocytes, Myb from horse heart, pepsin from porcine gastric mucosa, and formic acid were purchased from Sigma-Aldrich (St. Louis, MO, USA). HPLC-grade water and acetonitrile were obtained from Avantor Performance Materials, Inc. (Center Valley, PA, USA) was purchased and used as a solvent. Cookerbituril [7] was purchased from CBTECH (Pohang, Korea) and a stock solution (1 mM) was prepared by dissolving cookerbituril [7] in water. Pepsin digests were prepared by incubating protein (100 μM) with pepsin (0.24 mg / mL) for 15 minutes at 37 ° C. in water containing 1% v / v formic acid. In ESI-MS, the sample was diluted 10-fold. Cucurbituril [7] was then added to the solution, and the solution was subjected to ESI-MS analysis. The concentration of cucurbituril [7] was optimized to 50, 35, 100, and 50 μM for 10 μM of InsB, Ins, Ubq, and Myb, respectively.
전자분무 이온화 질량분석법 및 충돌 Electrospray Ionization Mass Spectrometry and Collision 유도 해리Induction harry (Collision-Induced Dissociation) (Collision-Induced Dissociation)
질량분석법 실험을 위해서, 양이온 모드에서, Z-spray ESI 소스를 구비한 Waters Synapt G2 HDMS quadrupole time-of-flight (Q-TOF) mass spectrometer (Waters, Manchester, UK)를 사용하였다. 실험 패러미터로는, 3.50 kV의 모세관 전압, 10 V의 샘플링 콘 전압, 5 V의 추출 콘 전압, 100℃의 소스 온도, 및 150℃의 탈용매화 온도를 세팅하였다.For mass spectrometry experiments, in cationic mode, a Waters Synapt G2 HDMS quadrupole time-of-flight (Q-TOF) mass spectrometer with a Z-spray ESI source (Waters, Manchester, UK) was used. As experimental parameters, capillary voltage of 3.50 kV, sampling cone voltage of 10 V, extraction cone voltage of 5 V, source temperature of 100 ° C., and desolvation temperature of 150 ° C. were set.
충돌 유도 해리 (CID) 실험을 위해서, 양이온 모드에서, Thermo Scientific LTQ Velos dual ion trap mass spectrometer (San Jose, CA, USA)를 사용하였다. ESI를 위한 패러미터로는, 3 kV의 모세관 전압 및 200℃의 모세관 온도를 세팅하였다. 각각의 스펙트럼은, 강화 스캔 모드 (enhanced scan mode)를 사용하여 얻어진 200번 스캐닝한 스펙트럼을 평균하여 얻었다. 검출된 이온 및 그 단편 이온들에 대한 명명은 Roepstorff 및 Fohlman의 방식을 따랐다 (Roepstorff, P.; Fohlman, J. Biomed. Mass Spectrom . 1984, 11, 601). 펩타이드 및 단편 이온들에 대해서 표시된 왼쪽 별표시 (*) 첨자는 쿠커비투릴[7]의 결합체를 나타낸다. 예를 들어, 쿠커비투릴[7]과 복합체를 형성한 bn 2+ 단편 이온은 *bn 2+로 명명된다.For collision induced dissociation (CID) experiments, in cationic mode, a Thermo Scientific LTQ Velos dual ion trap mass spectrometer (San Jose, CA, USA) was used. As a parameter for ESI, a capillary voltage of 3 kV and a capillary temperature of 200 ° C were set. Each spectrum was obtained by averaging 200 scanned spectra obtained using an enhanced scan mode. The nomenclature for the detected ions and their fragment ions followed the method of Roepstorff and Fohlman (Roepstorff, P .; Fohlman, J. Biomed. Mass Spectrom . 1984 , 11 , 601). Left asterisk (*) subscripts indicated for peptide and fragment ions indicate the conjugate of cucurbituril [7]. For example, the b n 2+ fragment ion complexed with cucurbituril [7] is named * b n 2+ .
기질-보조 레이저 탈착 이온화 질량분석법Substrate-Assisted Laser Desorption Ionization Mass Spectrometry
MALDI-MS 실험을 위해서, 355-nm Nd:YAG 레이저를 이용한 MALDI 소스를 구비한 Waters Synapt G2 HDMS mass spectrometer를 사용하였다 (Waters, Manchester, UK). MALDI 레이저 발사 속도 및 에너지는 각각 1000 Hz 및 350 (임의 단위)이었다. 기질 용액은 77% 아세토니트릴, 22.9% 물 및 0.1% 포름산 (v/v) 중의 20 mg/mL α-시아노-4-히드록시신남산 (CHCA)이었다. 펩신 소화를 위한 단백질의 농도는 20 μM이었으며, 펩신 소화 조건은 ESI-MS 실험들에서 사용된 것들과 동일하였다. 소화된 샘플에 첨가된 이후 쿠커비투릴[7]의 최종 농도는 InsB에 대해서 20 μM, Ubq에 대해서 40 μM로 최적화되었다. 이어서, MALDI-MS에 대한 샘플 용액을, 기질 및 분석물 용액을 1:1의 부피비로 혼합함으로써 제조하였다. 분석을 위해서, 샘플 플레이트 상에 샘플 용액들 (2 μL)을 스폿팅하였다.For MALDI-MS experiments, a Waters Synapt G2 HDMS mass spectrometer with a MALDI source using a 355-nm Nd: YAG laser was used (Waters, Manchester, UK). MALDI laser firing speed and energy were 1000 Hz and 350 (arbitrary units), respectively. The substrate solution was 20 mg / mL α-cyano-4-hydroxycinnamic acid (CHCA) in 77% acetonitrile, 22.9% water and 0.1% formic acid (v / v). The concentration of protein for pepsin digestion was 20 μΜ and pepsin digestion conditions were the same as those used in the ESI-MS experiments. The final concentration of cucurbituril [7] after addition to the digested samples was optimized to 20 μM for InsB and 40 μM for Ubq. A sample solution for MALDI-MS was then prepared by mixing the substrate and analyte solutions in a volume ratio of 1: 1. For analysis, sample solutions (2 μL) were spotted on the sample plate.
이온 이동도 질량분석법 및 컴퓨터 모델링Ion Mobility Mass Spectrometry and Computer Modeling
이온 이동도 MS (IM-MS) 실험을 위해서, Waters Synapt G2 HDMS 장치를 사용하였다. 이온 이동도 측정은 4가지 장치 패러미터들을 사용하여 수행하였다. 헬륨 셀에 대한 가스 흐름, TWIMS 파장 속도 및 파장 높이는 각각 180 mL min-1, 300 m s-1 및 20.0 V로 고정한 반면, 드리프트 셀에 대한 가스 흐름은 50, 60 또는 80 mL min-1의 세 가지 조건을 이용하였다. 실험적 도착 시간 (arrival time)을 충돌 단면적 (ΩD) 수치로 보정하는 것은 폴리알라닌 (Henderson, S. C.; Li, J.; Counterman, A. E.; Clemmer, D. E. J. Phys. Chem . B 1999, 103, 8780-8785), 멜리틴 (Salbo, R.; Bush, M. F.; Naver, H.; Campuzano, I.; Robinson, C. V.; Pettersson, I.; Jorgensen, T. J. D.; Haselmann, K. F. Rapid Commun . Mass Spectrom. 2012, 26, 1181-1193), 및 변성된 Ubq (Bush, M. F.; Hall, Z.; Giles, K.; Hoyes, J.; Robinson, C. V.; Ruotolo, B. T. Anal. Chem . 2010, 82, 9557-9565)에 대해서 기존에 보고된 ΩD 수치들을 사용하여 수행하였다. 3회 측정으로부터 보정된 ΩD 수치들을 평균하였다.For ion mobility MS (IM-MS) experiments, a Waters Synapt G2 HDMS device was used. Ion mobility measurements were performed using four device parameters. The gas flow, TWIMS wavelength velocity and wavelength height for helium cells are fixed at 180 mL min -1 , 300 ms -1 and 20.0 V, respectively, while the gas flow for drift cells is three different: 50, 60 or 80 mL min -1 . The conditions were used. Compensation of the experimental arrival time with the collision cross-sectional area (Ω D ) values is based on polyalanine (Henderson, SC; Li, J .; Counterman, AE; Clemmer, DE J. Phys. Chem . B 1999 , 103 , 8780). -8785), melittin (Salbo, R .; Bush, MF; Naver, H .; Campuzano, I .; Robinson, CV; Pettersson, I .; Jorgensen, TJD; Haselmann, KF Rapid Commun . Mass Spectrom. 2012 , 26 , 1181-1193), and denatured Ubq (Bush, MF; Hall, Z .; Giles, K .; Hoyes, J .; Robinson, CV; Ruotolo, BT Anal. Chem . 2010 , 82 , 9557-9565) Was performed using the previously reported Ω D values for. The corrected Ω D values from the three measurements were averaged.
쿠커비투릴[7]-펩타이드 복합체들의 컴퓨터 모델링은 GROMACS 4.5.5를 사용하여 수행하였다 (Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. J. Chem. Theory
Comput
. 2008, 4, 435-447). 시뮬레이션을 위해서 CHARMM 포스 필드 (Mackerell, A. D.; Feig, M.; Brooks, C. L. J.
Comput
.
Chem
. 2004, 25, 1400-1415; Bjelkmar, P.; Larsson, P.; Cuendet, M. A.; Hess, B.; Lindahl, E. J. Chem. Theory
Comput
. 2010, 6, 459-466) 및 CHARMM 제너럴 포스 필드 (Vanommeslaeghe, K.; Hatcher, E.; Acharya, C.; Kundu, S.; Zhong, S.; Shim, J.; Darian, E.; Guvench, O.; Lopes, P.; Vorobyov, I.; Mackerell, A. D. J. Comput.
Chem
. 2010, 31, 671-690)를 사용하였다. 펩타이드들의 초기 랜덤 코일 구조들은 Hyperchem 7.0 (Hypercube Inc., Gainesville, FL. USA)을 사용하여 생성하였다. 펩타이드 모델들 각각을 쿠커비투릴[7] 분자와 병합하였으며, 하기 프로파일을 사용하여 어닐링 시뮬레이션 500 사이클을 수행하였다: 50 ps 동안 300 K로부터 800 K로 가열, 50 ps 동안 800 K에서 일정 온도 시뮬레이션, 25 ps 동안 800 K로부터 300 K로 냉각, 및 25 ps 동안 300 K에서 평형화. 각 어닐링 사이클의 마지막 프레임으로부터 구조들을 추출하고, 후보 구조로 간주하였다. 가장 낮은 포텐셜 에너지를 갖는 5개의 구조들이 선택되었으며, MOBCAL (http://www.indiana.edu/~nano/)에서 채택된 투영 근사 (projection approximation) 모델 (Wyttenbach, T.; vonHelden, G.; Batka, J. J.; Carlat, D.; Bowers, M. T. J. Am.
Soc
. Mass
Spectrom
. 1997, 8, 275-282)을 사용하여 그들의 ΩD 수치들을 계산하였다. 복합체화되지 않은 펩타이드들 및 Myb34-70 펩타이드에 대해서는 시뮬레이션을 수행하지 않았는바, 이는 이들이 매우 높은 자유도를 가지며 긴 시뮬레이션 시간을 필요로 하기 때문이다.Computer modeling of cucurbituril [7] -peptide complexes was performed using GROMACS 4.5.5 (Hess, B .; Kutzner, C .; van der Spoel, D .; Lindahl, E. J. Chem. Theory Comput . 2008 , 4 , 435-447). For simulation, the CHARMM force field (Mackerell, AD; Feig, M .; Brooks, CL J. Comput . Chem . 2004 , 25 , 1400-1415; Bjelkmar, P .; Larsson, P .; Cuendet, MA; Hess, B Lindahl, E. J. Chem. Theory Comput . 2010 , 6 , 459-466 and CHARMM General Force Field (Vanommeslaeghe, K .; Hatcher, E .; Acharya, C .; Kundu, S .; Zhong, S Shim, J .; Darian, E .; Guvench, O .; Lopes, P .; Vorobyov, I .; Mackerell, AD J. Comput. Chem . 2010 , 31 , 671-690). Initial random coil structures of the peptides were generated using Hyperchem 7.0 (Hypercube Inc., Gainesville, FL. USA). Each of the peptide models was merged with a cucurbituril [7] molecule and
결과 및 검토Results and review
쿠커비투릴[7]과의With Cookerbituril [7] 복합체화에In complexation 의해서 N-말단 페닐알라닌을 갖는 펩신 소화된 펩타이드의 ESI-MS 신호들이 강화됨 ESI-MS signals of pepsin digested peptides with N-terminal phenylalanine are enhanced
도 15a 내지 15d는 쿠커비투릴[7]이 첨가된 것과 그렇지 않은 펩신 소화된 펩타이드들의 질량 스펙트럼을 나타낸다. 또한, 표 5는 N-말단 페닐알라닌을 갖는 펩타이드들의 피크들, 및 쿠커비투릴[7] 존재 및 부존재 하에서 그 상대적 존재비의 비율을 나열한 것이다.15A-15D show the mass spectra of pepsin digested peptides with and without cucurbituril [7]. Table 5 also lists the peaks of the peptides with N-terminal phenylalanine and the ratio of their relative abundance in the presence and absence of cucurbituril [7].
소화된 InsB 샘플 상에서 N-말단 페닐알라닌을 갖는 두 개의 펩타이드 종들 (B1-11 및 B1-13, 도 15a에서 별도 색상 표시됨)이 관찰되었지만 쿠커비투릴[7] 부존재 하에서는, 그 존재비가 낮았다. 이 샘플에 쿠커비투릴[7]을 첨가함으로써, InsB1-11 (FVNQHLCGSHL) 및 InsB1-13 (FVNQHLCGSHLVE) 펩타이드들의 존재비는 각각 ~5배 및 ~4배 증가하였으며, 쿠커비투릴[7]펩타이드 복합체 피크가 질량 스펙트럼상에서 가장 커지게 되었다. 상기된 InsB1-11 및 InsB1-13 펩타이드들에 더해서, Ins를 펩신 소화시킨 경우 N-말단 페닐알라닌을 함유한 두 가지 펩타이드들이 추가적으로 생성되었다 (도 15b 참조). 이러한 두 가지 펩타이드 이온들의 존재비 역시 쿠커비투릴[7] 첨가에 의해서 각각 ~7배 및 ~3배 증가하였다.Two peptide species with N-terminal phenylalanine (B1-11 and B1-13, separately colored in FIG. 15A) were observed on the digested InsB sample, but in the absence of cucurbituril [7], its abundance was low. By adding cucurbituril [7] to this sample, the abundance of InsB1-11 (FVNQHLCGSHL) and InsB1-13 (FVNQHLCGSHLVE) peptides increased ˜5 fold and ˜4 fold, respectively, with the cucurbituril [7] peptide complex peak on the mass spectrum It became the biggest. In addition to the InsB1-11 and InsB1-13 peptides described above, two peptides containing N-terminal phenylalanine were additionally generated when pepsin digested Ins (see FIG. 15B). The abundance of these two peptide ions was also increased ˜7 and ˜3 times by the addition of cucurbituril [7], respectively.
더 큰 단백질인 Ubq를 분석한 결과, N-말단 페닐알라닌을 갖는 펩타이드에 대한 신호들이 초기에는 거의 검출가능하지 않음을 알 수 있었다 (도 15c 참조). 이러한 펩타이드 피크들의 낮은 신호는 이중 질량 분석법을 사용하여 상기 서열들을 더욱 확인하고 특성화하는 통상적인 분석 과정에서도 문제를 야기한다. 쿠커비투릴[7]의 첨가에 따라서, Ubq4-15 펩타이드 (FVKTLTGKTITL) 피크는 상대적 존재비에 있어서 ~9배 증가하는 것으로 나타나서 분석이 매우 용이해졌다. Myb의 경우에도 유사한 강화 효과가 관찰되었는바 (도 15d 참조), Myb34-70 (FTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVL) 펩타이드의 존재비가 2배 증가됨을 관찰할 수 있었다. 4가지 다른 단백질들에 대해서 관찰된 일관된 신호 강화 현상은 펩신 소화한 펩타이드를 쿠커비투릴[7]과 결합시키는 것이 광범위하게 적용가능한 효과적인 기술이라는 것을 의미한다.Analysis of the larger protein, Ubq, revealed that signals for peptides with N-terminal phenylalanine are rarely detectable initially (see FIG. 15C). The low signal of these peptide peaks also pose problems in conventional analytical procedures that further identify and characterize the sequences using dual mass spectrometry. Following the addition of cucurbituril [7], the Ubq4-15 peptide (FVKTLTGKTITL) peaks appeared to increase ˜9-fold in relative abundance, making analysis very easy. Similar reinforcing effects were observed for Myb (see FIG. 15D), and the abundance of Myb34-70 (FTGHPETLEKFDKFKHLKTEAEMKASEDLKKHGTVVL) peptide was increased by 2 times. Consistent signal potentiation observed for four different proteins means that combining pepsin digested peptides with cucurbituril [7] is an effective technique that is widely applicable.
CID에 있어서In CID 쿠커비투릴Cooker bituril [7]·[7] · 펩타이드Peptide 복합체들의 향상된 서열 Enhanced sequence of complexes 커버리지Coverage
이중 질량분석법을 사용하여 단편 이온들을 분석하는 것은 펩타이드 이온들의 정확한 특정화를 위해서 중요한 과정이다. 따라서, 본 실시예에서는 쿠커비투릴[7]·펩타이드 복합체 이온들에도 이중 질량분석법을 활용한 정확한 특정화가 가능한지를 테스트하였다 (도 16a 내지 16d 참조). 또한, 복합체화된 이온들의 서열 커버리지 및 상보 b/y 이온 쌍 검출의 백분율을 복합체화되지 않은 이온들과 비교하였으며, 상기 두 가지 사항들은 모두 이중 질량분석법을 사용한 신뢰성 있는 분석에 있어서 중요한 사항들이다. 이중 질량 분석법의 효율을 비교하기 위해 쿠커비투릴[7] 결합체 및 비결합체 이온들에 대해 상기 사항들을 비교하였으며, 가장 풍부한 펩타이드 이온들로서, 그 피크들이 다른 피크들과 중첩되지 않는 이온들을 비교하였고, 그 결과를 하기 표 6에 요약하였다.Analyzing fragment ions using dual mass spectrometry is an important process for the precise characterization of peptide ions. Therefore, in this example, it was tested whether cookerbituril [7] .peptide complex ions can be accurately specified by using dual mass spectrometry (see FIGS. 16A to 16D). In addition, the sequence coverage of the complexed ions and the percentage of complementary b / y ion pair detection were compared to the uncomplexed ions, both of which are important for reliable analysis using dual mass spectrometry. In order to compare the efficiency of the double mass spectrometry, we compared the above with respect to cucurbituril [7] conjugated and unbounded ions and compared the ions with the most abundant peptide ions whose peaks do not overlap with other peaks. Are summarized in Table 6 below.
복합체화되지 않은 InsB1-11 이온의 CID 스펙트럼은 b- 및 y-타입 단편 이온들로 구성된 것으로 관찰되었으며, 이는 저-에너지 CID에서 통상적으로 관찰되는 단편들이다 (Paizs, B.; Suhai, S. Mass Spectrom . Rev. 2005, 24, 508-548). 유사하게, 복합체화된 InsB1-11 이온 또한 b- 및 y-타입 단편 이온들로 해리되었으며 (도 16a, 하단), 이를 통해 부가적인 서열 정보를 얻을 수 있다. 흥미롭게, 복합체화된 InsB1-11 이온의 경우 100%에 달하는 서열 커버리지가 얻어졌으나, 복합체화 되지 않은 이온은 Gly8 및 Ser9 사이에서 단편화가 이루어지지 않았다 (도 16a의 삽입 도면). 더 나아가, 복합체화된 이온의 경우, 부가적인 *b3, *b4 2+, 및 *b5 2+ 이온들의 관찰로 인해서, 더 많은 개수의 b/y 상보 이온 쌍들이 존재하였다. 이러한 결과는 쿠커비투릴[7] 복합체화가 펩타이드들의 이중 질량분석 결과를 개선시킬 수 있다는 것을 의미한다. 다른 펩타이드 이온들 및 그들의 복합체들에 대한 CID 또한 더욱 광범위하게 단편화된 b- 및 y-타입 단편 이온들을 생성하였다 (도 16b-d 및 표 6 참조). 모든 경우, 쿠커비투릴[7] 복합체가 더욱 개선된 분석 결과를 나타내었다. 예를 들어, 복합체화되지 않은 InsA1-11/B1-11 이온에서는 22개 중 19개의 아미드 결합들이 절단되었으며, 8개의 b/y 상보 이온 쌍들이 존재하였다 (도 16b, 상단). 복합체화된 형태에서는, 모든 아미드 결합들이 절단되었으며, 12개의 b/y 상보 이온 쌍들이 존재하였다 (도 16b 하단).CID spectra of uncomplexed InsB1-11 ions were observed to consist of b- and y-type fragment ions, which are the fragments commonly found in low-energy CIDs (Paizs, B .; Suhai, S. Mass Spectrom . Rev. 2005 , 24 , 508-548). Similarly, the complexed InsB1-11 ions were also dissociated into b- and y-type fragment ions (FIG. 16A, bottom), through which additional sequence information can be obtained. Interestingly, up to 100% sequence coverage was obtained for the complexed InsB1-11 ions, but the uncomplexed ions did not fragment between Gly8 and Ser9 (inset of FIG. 16A). Furthermore, for complexed ions, there were a greater number of b / y complementary ion pairs due to the observation of additional * b 3 , * b 4 2+ , and * b 5 2+ ions. These results indicate that cucurbituril [7] complexation can improve the results of double mass spectrometry of peptides. CIDs for other peptide ions and their complexes also produced more extensively fragmented b- and y-type fragment ions (see FIG. 16B-D and Table 6). In all cases, the cucurbituril [7] complex showed better results. For example, 19 out of 22 amide bonds were cleaved and 8 b / y complementary ion pairs were present in the uncomplexed InsA1-11 / B1-11 ions (FIG. 16B, top). In the complexed form, all the amide bonds were cleaved and there were 12 b / y complementary ion pairs (bottom of FIG. 16B).
Ubq4-15 펩타이드 이온 역시 완전한 서열 커버리지를 나타내었으며, 복합체화된 형태에서 더 많은 수의 b/y 상보 이온 쌍들이 관찰되었다 (표 6 참조). 복합체화된 Myb34-70 이온의 서열은 그 크기가 너무 커서 완전히 커버되지 않았지만, 그럼에도 불구하고 광범위한 단편화가 관찰되었다 (61% 내지 75%, 표 6 참조). 표 6을 참조하면, 복합체화된 InsB1-13 및 InsA1-13/B1-13 이온들 또한 증가된 서열 커버리지 (각각 83% 내지 100% 및 83% 내지 92%) 및 더 큰 b/y 상보 이온 쌍들의 비율을 나타냄을 알 수 있다. 다양한 펩타이드들에 대해서 관찰되는 단편화 효율의 일관된 향상은, 펩타이드를 쿠커비투릴[7]과 복합체화함으로써, 화학적 반응을 이용한 펩타이드 변형 또는 특별한 처리 없이도, 쿠커비투릴[7] 부존재 하에서 통상적으로 가능한 것보다 더욱 향상된 단편화 및 분석이 가능하다는 것을 보여준다.Ubq4-15 peptide ions also exhibited complete sequence coverage, with a larger number of b / y complementary ion pairs observed in the complexed form (see Table 6). The sequence of the complexed Myb34-70 ions was too large in size to be completely covered, but nevertheless extensive fragmentation was observed (61% to 75%, see Table 6). Referring to Table 6, the complexed InsB1-13 and InsA1-13 / B1-13 ions also increased sequence coverage (83% to 100% and 83% to 92%, respectively) and larger b / y complementary ion pairs It can be seen that the ratio of these. The consistent improvement in fragmentation efficiency observed for the various peptides was achieved by complexing the peptides with cucurbituril [7], thus further fragmentation more than would normally be possible in the absence of cucurbituril [7], without the need for special modification or peptide modification using chemical reactions. And analysis is possible.
쿠커비투릴[7]과의With Cookerbituril [7] 복합체화에In complexation 의해서 N-말단 페닐알라닌을 갖는 펩신 소화된 펩타이드의 MALDI-MS 신호들이 강화됨 MALDI-MS signals of pepsin digested peptide with N-terminal phenylalanine are enhanced
쿠커비투릴[7]의 신호 강화 효과는 또한 MALDI 스펙트럼에서도 관찰되었다. InsB의 소화로부터 얻어진, N-말단 페닐알라닌을 함유하는 3가지 펩타이드들의 경우, 쿠커비투릴[7]과 복합체를 형성하는 경우에 그 상대적 존재비에 있어서 ~2배 내지 ~8배 증가를 나타내었다 (도 17a 참조). 또한, 초기에는 검출불가능하였던 InsB25-30 펩타이드가 쿠커비투릴[7]의 첨가 이후에 뚜렷하게 관찰가능하게 되었다. 유사하게, MALDI-MS에 의해서 검출가능하지 않았던 Ubq4-15 펩타이드의 경우, 쿠커비투릴[7]이 첨가되면 매우 풍부해졌다 (도 17b). 따라서, 쿠커비투릴[7]의 신호 강화 효과는 ESI-MS에만 한정된 것은 아니며, MALDI-MS에도 적용가능하고, 쿠커비투릴[7]의 부존재 하에서는 용이하게 검출할 수 없었던 펩타이드들에 대한 정보를 얻게 해준다.The signal enhancing effect of cucurbituril [7] was also observed in the MALDI spectrum. Three peptides containing N-terminal phenylalanine, obtained from digestion of InsB, exhibited a ˜2 to ˜8-fold increase in their relative abundance when complexed with cucurbituril [7] (see FIG. 17A). ). InsB25-30 peptide, which was initially undetectable, also became apparently observable after the addition of cucurbituril [7]. Similarly, for Ubq4-15 peptides that were not detectable by MALDI-MS, the addition of cucurbituril [7] became very rich (FIG. 17B). Accordingly, the signal enhancing effect of cucurbituril [7] is not limited to ESI-MS, but also applicable to MALDI-MS, and it provides information on peptides that could not be easily detected in the absence of cucurbituril [7].
쿠커비투릴[7]에On cucurbituril [7] 의해서 By 매개되는Mediated 강화된 질량분석 신호 및 Enhanced mass spectrometry signals and 단편화에 대한 이해Understanding Fragmentation
종래에 쿠커비투릴[7]의 이온화가, 더 높게 대전된 복합체 이온들을 생성한다는 사실이 보고된 바 있다 (Lee, J. W.; Lee, H. H. L.; Ko, Y. H.; Kim, K.; Kim, H. I. J. Phys. Chem . B 2015, 119, 4628-4636). 이는 양으로 대전된 손님 분자의 작용기들이 쿠커비투릴[7]의 입구 부분의 카르보닐기와의 강한 이온-쌍극자 상호작용에 의해서 안정화되고, 따라서 두 양이온 작용기들 사이의 정전기적 반발력을 감소시키기 때문이다. 유사한 대전 강화 효과가 본 발명에서도 야기되는 것으로 판단된다. 예를 들어, N-말단 페닐알라닌을 함유한 B-사슬 Ins 펩타이드 (B1-11 및 B1-13) 및 Ins 펩타이드 (A1-13/B1-11 및 A1-13/B1-13)의 가장 풍부한 대전 상태들은 쿠커비투릴[7]의 부존재 하에서는 각각 +2 및 +3이지만, 쿠커비투릴[7]이 첨가되면 각각 +3 및 +4가 된다 (도 15b 참조). Ubq4-15 펩타이드의 경우에는, 쿠커비투릴[7]을 첨가함으로써 +2 대전된 이온들이 사라지며, +3 대전된 이온들만 관찰된다 (도 15c 참조). 이러한 결과들은 쿠커비투릴[7]이 그 손님 분자들에 대해서 대전 강화 효과를 야기한다는 사실을 명백히 보여준다. 종래의 연구들도 유사한 효과들을 보고한 바 있다 (Lee, J. W.; Lee, H. H. L.; Ko, Y. H.; Kim, K.; Kim, H. I. J. Phys. Chem . B 2015, 119, 4628-4636). 한편, 높은 양성자 친화도는 ESI 및 MALDI에 의한 효과적인 이온화를 위해서 가장 중요한 인자들 중 하나인데 (Mirzaei, H.; Regnier, F. Anal. Chem . 2006, 78, 4175-4183), 이는 다수의 분석물들이 이온화 과정 도중에 양성자를 얻어 이온화되기 위해서 경쟁하기 때문이다. 따라서, 쿠커비투릴[7]에 의한 대전 강화효과는 펩타이드들의 양성자 친화도를 높이며, 이는 각 펩타이드 이온의 신호 강화를 야기한 것으로 추측해볼 수 있다.It has previously been reported that ionization of cucurbituril [7] produces higher charged complex ions (Lee, JW; Lee, HHL; Ko, YH; Kim, K .; Kim, HI J. Phys. Chem . B 2015 , 119 , 4628-4636). This is because the functional groups of the positively charged guest molecules are stabilized by strong ion-dipole interactions with carbonyl groups at the inlet portion of cucurbituril [7], thus reducing the electrostatic repulsion between the two cationic functional groups. It is believed that similar charge strengthening effects occur in the present invention. For example, the most abundant state of charge of B-chain Ins peptides (B1-11 and B1-13) and Ins peptides (A1-13 / B1-11 and A1-13 / B1-13) containing N-terminal phenylalanine Are +2 and +3, respectively, in the absence of cookerbituril [7], but are added to +3 and +4, respectively, when cookerbituril [7] is added (see FIG. 15B). In the case of the Ubq4-15 peptide, +2 charged ions disappear by adding cucurbituril [7], and only +3 charged ions are observed (see FIG. 15C). These results clearly show that cucurbituril [7] causes an antistatic effect on the guest molecules. Previous studies have reported similar effects (Lee, JW; Lee, HHL; Ko, YH; Kim, K .; Kim, HI J. Phys. Chem . B 2015 , 119 , 4628-4636). On the other hand, high proton affinity is one of the most important factors for effective ionization by ESI and MALDI (Mirzaei, H .; Regnier, F. Anal. Chem . 2006 , 78 , 4175-4183) This is because water competes to obtain protons and ionize during the ionization process. Therefore, the charge enhancing effect by cucurbituril [7] increases the proton affinity of the peptides, which can be presumed to cause signal enhancement of each peptide ion.
쿠커비투릴[7]·펩타이드 복합체 이온들을 더욱 자세히 이해하기 위해서, 본 발명에서는 IM-MS를 사용하여 쿠커비투릴[7]·펩타이드의 구조를 조사하였으며 (도 18 참조), 이는 컴퓨터 모델링과 함께, 펩타이드 이온들의 구조적 정보를 제공할 수 있다. IM-MS 결과에 따르면, 복합체화된 펩타이드 이온들 및 복합체화되지 않은 펩타이드 이온들 모두 일반적으로 하나 또는 두 가지 구조들로 존재한다. 컴퓨터 모델링을 통해서 얻은 복합체 이온들의 최저 에너지 구조들에 대한 이론적 충돌 단면적 (ΩD) 수치들은 일반적으로 실험적 수치들과 잘 부합되는 결과를 보여주었다. 상기 이론적 모델들의 구조를 살펴보면, 쿠커비투릴[7]이 펩타이드들의 N-말단 페닐알라닌에 결합된다는 것을 보여준다. 흥미로운 점은, 상기 모델들은 또한 쿠커비투릴[7]이 페닐알라닌 N-말단 이외에 다른 양전하로 대전된 잔기를 자신 쪽으로 끌어당겨서 '펩타이드 족집게 (peptide tweezer)' 구조를 형성한다는 점이다 (도 18). 쿠커비투릴[7]에 의해서 야기되는 이러한 펩타이드들의 구조적 특징들은 이전에 보고된 바가 전혀 없으며, 쿠커비투릴[7]이 탁월한 전하 안정 능력을 갖는다는 것을 의미한다.In order to understand cucurbituril [7] peptide complex ions in more detail, the present invention investigated the structure of cucurbituril [7] peptide using IM-MS (see FIG. 18). It can provide structural information. According to the IM-MS results, both complexed and uncomplexed peptide ions are generally present in one or two structures. The theoretical collision cross-sectional area (Ω D ) values for the lowest energy structures of the composite ions obtained through computer modeling generally show good agreement with the experimental data. Looking at the structure of the theoretical models, it is shown that cucurbituril [7] binds to the N-terminal phenylalanine of the peptides. Interestingly, these models also draw cucurbituril [7], in addition to the phenylalanine N-terminus, to attract other positively charged residues towards them to form a 'peptide tweezer' structure (FIG. 18). Structural features of these peptides caused by cucurbituril [7] have not been reported previously, meaning that cucurbituril [7] has excellent charge stabilizing ability.
상기 결과들에 기초해서, 본 발명자들은 쿠커비투릴[7]이 이중 질량분석 과정에서 펩타이드의 단편화를 촉진하는 것은 펩타이드의 작용기들과 효과적으로 상호작용하기 때문이라고 판단하였다. 예를 들어, 도 16c는 Lys 잔기들의 C-말단 아미드 백본에서의 절단이, 복합체화되지 않은 Ubq4-15 펩타이드 이온들의 CID에서는 발생되지 않는다는 점을 보여준다. 이러한 사실은 Lys 존재할 경우 그 C-말단 아미드 결합의 절단이 잘 일어난다는 점과는 대조적인 것이다 (Paizs, B.; Suhai, S. Mass Spectrom . Rev. 2005, 24, 508-548). 그런데, Lys 잔기에 대한 아미드 결합 C-말단의 절단에서는 Lys 곁사슬의 중성화 및 아미드 결합으로의 양성자 수송이 선행되어야 하기 때문에, 이러한 과정들이 복합체화되지 않은 Ubq4-15 이온에 대해서는 잘 일어나지 않는 것으로 추측해볼 수 있다. 이와는 대조적으로, 본 발명에 따른 실험 결과들은, 펩타이드가 쿠커비투릴[7]과 복합체를 형성하는 경우에는, 이러한 부위들에서의 단편화가 가능해짐을 보여준다 (도 16c, 하단). 상기 결과들은 쿠커비투릴[7]이 Lys 잔기의 중성화 및 그 C-말단 아미드 결합으로의 양성자 수송을 용이하게 할 수 있다는 점을 보여준다. 따라서, 본 발명자들은 쿠커비투릴[7]이 양으로 대전된 Lys 곁사슬과 상호작용하면서 그 양성자의 이동을 촉진시키고, 다시 그 양성자가 Lys 잔기에 대한 아미드 결합 C-말단으로 이동할 수 있게 함으로써 더 효율적인 단편화를 유발하는 것으로 판단한다 (도 19 참조).Based on the above results, the inventors determined that cucurbituril [7] promotes fragmentation of peptides during the dual mass spectrometry because it effectively interacts with the functional groups of the peptides. For example, FIG. 16C shows that cleavage in the C-terminal amide backbone of Lys residues does not occur in the CID of uncomplexed Ubq4-15 peptide ions. This is in contrast to the cleavage of the C-terminal amide bonds in the presence of Lys (Paizs, B .; Suhai, S. Mass Spectrom . Rev. 2005 , 24 , 508-548). However, since the cleavage of the amide bond C-terminus to the Lys residue must be preceded by the neutralization of the Lys side chain and the proton transport to the amide bond, these processes are unlikely to occur for uncomplexed Ubq4-15 ions. Can be. In contrast, experimental results according to the present invention show that fragmentation at these sites is possible when the peptide complexes with cucurbituril [7] (FIG. 16C, bottom). The results show that cucurbituril [7] can facilitate the neutralization of Lys residues and the proton transport to its C-terminal amide bonds. Thus, the inventors have discovered that more efficient fragmentation is achieved by promoting the migration of the protons while the cucurbituril [7] interacts with the positively charged Lys side chains, allowing the protons to move to the amide bond C-terminus to the Lys residue. It is determined to cause (see Fig. 19).
종합하면, 본 발명에서는 쿠커비투릴[7]에 의해서 펩신으로 소화한 펩타이드의 신호 및 이중 질량 분석법에서 서열 커버리지를 향상시키는 것을 통해서 단백질들에 대한 개선된 질량분석법 기반 분석 방법을 제시하였다. 본 발명자들은 쿠커비투릴[7]으로 N-말단 페닐알라닌을 포획함으로써, 펩신으로 소화된 펩타이드들의 질량분석법에서의 분석능을 선택적으로 개선할 수 있는 일반적인 접근방법을 제공할 수 있다는 점을 입증하였다. 쿠커비투릴[7] 첨가에 의한 신호 강화는 양성자 친화도의 증가로 인한 것으로 판단해 볼 수 있다. 또한, 쿠커비투릴[7]에 의한 개선된 서열 커버리지는, 쿠커비투릴[7]이 CID 도중 다양한 양으로 대전된 잔기들과 강하게 상호작용하여 여러 단편화 경로들을 가능케 하기 때문으로 판단해 볼 수 있다. 본 발명에 따른 방법은 새로운 기기, 화학적 표지 또는 특수 샘플 제조를 요하는 것이 아니며, 상업적으로 용이하게 구입가능한 소량의 쿠커비투릴[7]을 간단하게 샘플에 첨가함으로써 수행될 수 있다. 따라서, 본 발명의 간편성 및 일반성을 감안할 때, 본 발명은 범용 단백질 분석을 위한 매우 효과적인 수단을 제공할 수 있다.Taken together, the present invention provides an improved mass spectrometry based analysis method for proteins by improving the sequence coverage in signal and double mass spectrometry of peptides digested with puckerin by Cookerbituril [7]. We have demonstrated that by capturing N-terminal phenylalanine with cucurbituril [7], we can provide a general approach to selectively improve the analytical performance in mass spectrometry of pepsin digested peptides. Signal enhancement by the addition of cucurbituril [7] may be attributed to the increased proton affinity. In addition, improved sequence coverage by cucurbituril [7] can be judged because cucurbituril [7] interacts strongly with residues charged at varying amounts during CID to enable several fragmentation pathways. The method according to the invention does not require the preparation of new instruments, chemical labels or special samples, and can be carried out by simply adding a small amount of commercially available cucurbituril [7] to the sample. Thus, given the simplicity and generality of the present invention, the present invention can provide a very effective means for general purpose protein analysis.
본 발명에 따르면, 단당류의 정성분석, 상대 정량 및 절대 정량을 효율적으로 수행할 수 있는바, 단당류의 분석 시간 및 비용을 획기적으로 감소시킬 수 있다. According to the present invention, qualitative analysis, relative quantification and absolute quantification of monosaccharides can be efficiently performed, and the analysis time and cost of monosaccharides can be drastically reduced.
또한, 본 발명에 따르면, 펩타이드 시료를 분석함에 있어서, 간단한 방법으로 쿠커비투릴[7]만을 첨가하여 표적 시료에 의해서 야기되는 분석 신호를 획기적으로 향상시킬 수 있으며, 분석 대상 펩타이드의 서열 커버리지를 향상시킬 수 있다.In addition, according to the present invention, in analyzing a peptide sample, by adding only cucurbituril [7] by a simple method, the analysis signal caused by the target sample can be significantly improved, and the sequence coverage of the peptide to be analyzed can be improved. have.
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| CN113834871B (en) * | 2021-09-18 | 2024-05-28 | 北京中医药大学 | A method for rapid analysis of low molecular weight sugars based on paper spray mass spectrometry and its application |
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