WO2017000789A1 - Covalently crosslinked n-peptide inhibitor - Google Patents
Covalently crosslinked n-peptide inhibitor Download PDFInfo
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- WO2017000789A1 WO2017000789A1 PCT/CN2016/085968 CN2016085968W WO2017000789A1 WO 2017000789 A1 WO2017000789 A1 WO 2017000789A1 CN 2016085968 W CN2016085968 W CN 2016085968W WO 2017000789 A1 WO2017000789 A1 WO 2017000789A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/005—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
- C07K14/08—RNA viruses
- C07K14/15—Retroviridae, e.g. bovine leukaemia virus, feline leukaemia virus human T-cell leukaemia-lymphoma virus
- C07K14/155—Lentiviridae, e.g. human immunodeficiency virus [HIV], visna-maedi virus or equine infectious anaemia virus
- C07K14/16—HIV-1 ; HIV-2
- C07K14/162—HIV-1 ; HIV-2 env, e.g. gp160, gp110/120, gp41, V3, peptid T, CD4-Binding site
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
- A61K38/16—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/005—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
- C07K14/08—RNA viruses
- C07K14/15—Retroviridae, e.g. bovine leukaemia virus, feline leukaemia virus human T-cell leukaemia-lymphoma virus
- C07K14/155—Lentiviridae, e.g. human immunodeficiency virus [HIV], visna-maedi virus or equine infectious anaemia virus
- C07K14/16—HIV-1 ; HIV-2
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N2740/00—Reverse transcribing RNA viruses
- C12N2740/00011—Details
- C12N2740/10011—Retroviridae
- C12N2740/16011—Human Immunodeficiency Virus, HIV
Definitions
- the invention belongs to the field of biomedicine and relates to a polypeptide against human immunodeficiency virus (HIV) infection, a derivative thereof, a stereoisomer, or a salt which is not physiologically toxic.
- the present invention also relates to a pharmaceutical composition comprising the above polypeptide, a derivative thereof, a stereoisomer, or a salt which is not physiologically toxic, and a preparation of the polypeptide, a derivative thereof, a stereoisomer, or a salt which is not physiologically toxic in preparation Use in the treatment and/or prevention and/or adjuvant treatment of diseases associated with HIV infection, especially in the acquisition of immunodeficiency syndrome (AIDS).
- HIV immunodeficiency virus
- HIV-1 human immunodeficiency virus type 1
- HIV-1 human immunodeficiency virus type 1
- Drug treatment is still the only effective method at present.
- the clinical application of anti-HIV-1 drugs, supplemented by highly active antiretroviral therapy, can prolong the survival time and improve the quality of life of HIV-infected patients to some extent.
- HIV fusion inhibitors are novel anti-HIV drugs that interfere with the entry of viruses into target cells. They cut off the spread of the virus at the initial stage of infection, which has special significance for the prevention and control of HIV-1 infection, and thus becomes a new mechanism. Hot spots in HIV drug research.
- Gp41 is a specific protein that mediates the fusion of HIV-1 virus with target cell membranes and is a major target for fusion inhibitors.
- HR1, NHR or N-peptide the C-terminal repeat
- HR2, CHR or C peptide C-terminal repeat
- HR2 in three gp41 molecules interacts with HR1 to form a hexagonal core structure (6-HB).
- the 6-HB formed in the gp41 molecule is the core structure of the whole fusion, and its crystal structure is the basic and basic model for designing fusion inhibitors. Designing peptide fusion inhibitors
- the action of the helical region sequence corresponding to the gp41 molecule blocks the formation of the endogenous 6HB, thereby blocking
- Fusion inhibitors based on natural C-peptide sequences have high activity and IC 50 can reach nanomolar levels. Therefore, the fusion inhibitors that have entered clinical development are both C-peptides and their derivatives.
- Typical C-peptide fusion inhibitors are T20 and C34. Both are derived from the polypeptide of the CHR native sequence of gp41, and the target of action of these C-peptide drugs are all NHR trimers.
- the researchers designed a new generation of fusion inhibitors, most of which use C34 as a template. Compared with T20, the activity and stability of the new inhibitors have been greatly improved, among which T1144 and Sifuvirtide have achieved good clinical results.
- N-peptide fusion inhibitors based on the viral gp41-based NHR design are another development direction. From the structure and mechanism of the above three gp41 molecules to form 6HB, CHR and NHR are ligands, and the two have specific interaction characteristics, forming 6HB and releasing energy, driving the fusion of virus and cells. To date, although the N-peptide fusion inhibitor has not yet entered the clinical study, the first reported fusion inhibitor DP107 is the N-peptide. This shows from another side that its research problems are more and more difficult. The activity of the N-peptide is generally at the micromolar level, about 1000 times lower than the corresponding C-peptide.
- N-peptide fusion inhibitors inhibit the formation of 6HB in gp41 molecules in two ways, thereby blocking the fusion process between HIV and cells: 1) exogenous N-peptide trimer and CHR in gp41 Role, the formation of heterologous 6HB, so that gp41 can not be intramolecular folding, interrupt the fusion; 2) single-stranded N-peptide complexed in NHR, forming a heterotrimer, inhibiting the formation of 6HB in gp41 molecule.
- the N-peptide inhibitors that act in the first mode are more active, and the activities of the two methods differ by one to three orders of magnitude.
- the researchers used various methods to make the N-peptide fusion inhibitor inhibit the formation of 6HB in gp41 molecule mainly by the first method, but the problem is that the N-peptide fragment itself is difficult to form a stable conformer (N3 helix) of active conformation, and The surface contains more hydrophobic residues, which are easily aggregated and inactivated under physiological conditions. Therefore, the research of N-peptide fusion inhibitors is mainly How to stabilize its trimer and improve physical and chemical properties. From the perspective of R&D drugs, CHR and NHR can be mutually targets. N-peptide fusion inhibitors target CHR in gp41, which is completely different from T20 (enfuvirtide) and Maraviroc. Is one of the effective ways to avoid or slow the cross-resistance with existing drugs.
- the general method is to conjugate a natural N-peptide fragment to a helper polypeptide capable of forming a stable triple helix structure, or to use a disulfide bond to link the above-designed conjugated N-peptide to form Irreversible trimeric N-peptides, which increase the activity of N-peptide inhibitors by 2-3 orders of magnitude.
- the above method also has its own drawbacks: the single-stranded N-peptide has low activity and is easy to aggregate and precipitate; the conjugation of the helper polypeptide makes the N-peptide sequence conjugated to be verbose; the disulfide-crosslinking can increase the activity of the N-peptide, but Linkage reaction sites and reaction specificity are uncontrollable, and so on. All of the above drawbacks limit the development of N-peptide inhibitors, which are still a long way from the drug.
- the invention de novo has designed an artificial auxiliary sequence which can stably form a triple helix structure, and designs a new covalent bond forming method, chemically modifying at a suitable site, and using a lactam bond to obtain a fixed-point covalent cross-linking.
- a trimer-assisted sequence which is then conjugated to a portion of the native N-peptide, such that the conjugated N-peptide is capable of interacting with the CHR of the virus, resulting in a covalently cross-linked, newly conjugated N-peptide inhibitor, thereby completing this invention.
- the invention is based on a novel design idea and a new covalent bond formation method, and designs a novel N-peptide inhibitor to improve the inhibitory activity of the N-peptide.
- a first aspect of the invention relates to a compound of formula I or formula II, a derivative thereof, a stereoisomer or a salt of no physiological toxicity,
- the compound of formula II is a compound of three formula I which is covalently crosslinked by two a trimer,
- X 1 is deleted or selected from L-type natural amino acids
- X 2 , X 3 , X 4 , X 6 , and X 7 are each independently selected from natural L-type natural amino acids
- X 5 is selected from the group consisting of L-type natural amino acids and L-type unnatural amino acids.
- X 8 , X 9 , X 10 , X 11 , X 12 , X 13 , X 14 , X 15 , X 16 , X 17 , X 18 , X 19 , X 20 , X 21 are each independently selected from L-type natural amino acid ,
- X 8 , X 9 , X 10 , X 11 , X 12 , X 13 , X 14 exist simultaneously or simultaneously,
- X 15 , X 16 , X 17 , X 18 , X 19 , X 20 , X 21 exist simultaneously or simultaneously,
- Z represents an N-terminal group and may be -NH 2 , -NR 1 C(O)R 2 , C 1-6 alkyl, C 1-6 alkoxy or -LR 3 ,
- R 1 and R 2 are independently selected from H and an alkyl group
- L is a linking fragment selected from a dicarboxylic acid (eg, oxalic acid, malonic acid, succinic acid, etc.), derivatized with a carboxyl group at the N-terminus and esterified with R 3 having a hydroxyl group,
- a dicarboxylic acid eg, oxalic acid, malonic acid, succinic acid, etc.
- R 3 is a group which can react with a carboxyl group such as R′OH, PEG, cholesterol, etc., and does not affect the crosslinking reaction, wherein R′ is an alkyl group,
- B represents a C-terminal group and may be -COOH or -C(O)NR 4 R 5 , wherein R 4 and R 5 are independently selected from H and an alkyl group, and preferably R 4 and R 5 are both H.
- the compound of Formula I or Formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, according to the first aspect of the invention wherein said covalent cross-linking Is a covalent bond formed between X 5 in one compound of formula I and another glutamic acid at position 5 after X 5 in another compound of formula I, or the covalent cross-linking is in a compound of formula I X 2 forms a covalent bond with another glutamic acid at the 5th position after X 2 in the compound of the formula I, and the covalent bond is preferably an amide bond (-NC(O)-).
- the amino acid is selected from the group consisting of glycine (Gly), alanine (Ala), leucine (Leu), isoleucine (Ile), glutamic acid (Glu), glutamine (Gln), and aspartic acid (Asp).
- the L-type unnatural amino acid is ornithine (Orn, O).
- the compound of Formula I or Formula II of Claim 1 of the first aspect of the invention a derivative thereof, a stereoisomer or a salt of no physiological toxicity, wherein:
- X 1 is tryptophan (Trp)
- X 2 is selected from the group consisting of arginine (Arg), lysine (Lys) and ornithine (Orn).
- X 3 is selected from the group consisting of glutamine (Gln) and histidine (His).
- X 4 is selected from the group consisting of glutamine (Gln) and histidine (His).
- X 5 is selected from the group consisting of arginine (Arg), lysine (Lys) and ornithine (Orn).
- X 6 is selected from the group consisting of glutamine (Gln) and histidine (His).
- X 7 is selected from the group consisting of glutamine (Gln) and histidine (His).
- X 8 is arginine (Arg)
- X 10 is glutamine (Gln)
- X 11 is glutamine (Gln)
- X 12 is isoleucine (Ile),
- X 13 is glutamic acid (Glu)
- X 14 is glutamine (Gln)
- X 15 is arginine (Arg),
- X 16 is isoleucine (Ile),
- X 17 is glutamic acid (Glu)
- X 18 is alanine (Ala),
- X 19 is glutamine (Gln)
- X 20 is glutamine (Gln)
- X 21 is histidine (His).
- the compound of Formula I or Formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, according to the first aspect of the invention wherein said covalent cross-linking Is the amide bond (-NC(O)-) formed by the lysine or ornithine represented by X 5 in the compound of the formula I and the glutamic acid at the 5th position after the X 5 in the compound of the formula I,
- the covalent cross-linking is the formation of an amide bond between lysine or ornithine represented by X 2 in a compound of formula I and another glutamic acid at position 5 after X 2 in another compound of formula I ( -NC(O)-).
- the compound of Formula I or Formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, according to the first aspect of the invention is selected from the group consisting of:
- a second aspect of the invention relates to a nucleic acid molecule encoding a compound of the above formula I or formula II according to any one of the first aspects of the invention, a derivative thereof, a stereoisomer or a salt of no physiological toxicity. .
- a third aspect of the invention relates to a recombinant vector comprising the nucleic acid molecule of the second aspect of the invention.
- the vector may be a prokaryotic expression vector or a eukaryotic expression vector.
- a fourth aspect of the invention relates to a host cell comprising the nucleic acid molecule of the second aspect of the invention and/or the recombinant vector of the third aspect of the invention.
- the cells are, for example, prokaryotic cells (e.g., E. coli) or eukaryotic cells (e.g., yeast cells, insect cells, mammalian cells).
- a fifth aspect of the invention relates to a pharmaceutical composition
- a pharmaceutical composition comprising at least one compound of the above formula I or formula II according to any one of the first aspects of the invention, a derivative thereof, a stereoisomer or none A physiologically toxic salt, or it comprises at least one nucleic acid molecule of the second aspect of the invention, optionally further comprising a pharmaceutically acceptable carrier or excipient.
- a sixth aspect of the invention relates to the compound of the formula I or the formula II, the derivative, the stereoisomer or the non-physiologically-soluble salt thereof according to any one of the first aspects of the invention, or the second aspect
- a seventh aspect of the invention relates to the above formula I according to any of the first aspects of the invention or A compound of the formula II, a derivative thereof, a stereoisomer or a non-physiologically toxic salt or the nucleic acid molecule of the second aspect or the pharmaceutical composition of the fifth aspect of the invention is prepared for inhibiting HIV (for example) Use of HIV-1) in cells fused to cells.
- An eighth aspect of the invention relates to a method of inhibiting HIV (e.g., HIV-1)-cell fusion in vivo or in vitro, the method comprising using an effective amount of at least one of the aforementioned first aspects of the first aspect of the invention A step of the compound of Formula I or Formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, or the nucleic acid molecule of the second aspect or the pharmaceutical composition of the fifth aspect of the invention.
- HIV e.g., HIV-1
- a ninth aspect of the invention relates to a method of treating and/or preventing and/or adjuvant treatment of a disease associated with HIV infection, in particular AIDS, comprising administering to a patient in need of such treatment a therapeutically and/or prophylactically effective amount At least one compound of the above formula I or formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, or a nucleic acid molecule according to the second aspect or the present invention.
- the step of the pharmaceutical composition of the fifth aspect of the invention is provided.
- the present invention also relates to the compound of the above formula I or formula II, a derivative thereof, a stereoisomer or a non-physiologically toxic salt according to any one of the first aspects of the invention, wherein the formula I or formula II is a compound, a derivative thereof, a stereoisomer or a non-physiologically toxic salt for inhibiting HIV (e.g., HIV-1) and cell fusion, or for treating and/or preventing and/or adjuvant treatment of HIV infection-related diseases (especially It is AIDS).
- HIV e.g., HIV-1
- cell fusion e.g., HIV-1
- HIV infection-related diseases especially It is AIDS
- HIV Human Immunodeficiency Virus
- HIV-1 virus HIV-1 virus
- HIV-2 virus HIV-1 virus
- the AIDS is an acquired immunodeficiency syndrome (AIDS).
- AIDS acquired immunodeficiency syndrome
- the extracellular domain of Gp41 of HIV-1 virus has two helical structural domains closely related to membrane fusion, namely the N-terminal repeat (HR1) and the C-terminal repeat (HR2).
- HR1 N-terminal repeat
- HR2 C-terminal repeat
- HR2 in three gp41 molecules interacts with HR1 to form a hexagonal core structure (6-HB).
- 6-HB core structure three N-peptides (ie, the 36-peptide of the N-terminal repeat, N36) form a centrally located trimer complex helix core, also called It is an N-helix trimer, or a trimer for short.
- the compound of the formula I of the present invention is an N-peptide derivative, and therefore the compound of the formula I can also be referred to as an N-peptide in the present invention.
- the compounds of formula II of the present invention form covalent cross-linking between the three polypeptides of the compound of formula I, thereby forming a more stable and more active trimer compound.
- covalent crosslinking is lysine or ornithine represented by X 5 in one compound of formula I and the fifth position after X 5 in another compound of formula I (ie An amide bond (-NC(O)-) is formed between the glutamic acid at the X 5 +5 position, or the covalent cross-linking is a lysine or avian ammonia represented by X 2 in a compound of the formula I formation of an amide bond (-NC (O) -) between an acid of formula I and another compound of 5 X 2 behind (i.e. position X 2 +5) glutamic acid.
- an amide bond may be formed between the two compounds of the formula I, so that among the trimers formed, three compounds of the formula I may be covalently linked to each other to form a bond. Three amide bonds, thereby achieving the purpose of stabilizing the trimer.
- the compound of the formula I of the present invention can be synthesized by a standard Fmoc solid phase method, and a Rink Amide resin is selected, and the peptide chain is extended from the C terminal to the N terminal.
- the condensing agent can be HBTU/HoBt/DIEA.
- the deprotecting agent can be a piperidine/DMF solution.
- the peptide sequence can be synthesized using a CS Bio peptide synthesizer, and finally the N-terminus of the polypeptide is blocked with acetic anhydride reagent acetate.
- the cleavage agent may be trifluoroacetic acid/ethanedithiol/m-cresol (TFA/EDT/m-cresol), and the crude peptide is dissolved in water and stored by lyophilization. It can be separated and purified by medium pressure liquid chromatography or high pressure liquid chromatography (HPLC). The pure peptide content is >95%.
- the molecular weight of the peptide sequence is determined by matrix-assisted laser desorption time-of-flight mass spectrometry (MALDI-TOF-MS).
- the compound of the formula II of the present invention can be synthesized by the following method:
- the compounds of formula I X 2 rear section 5 i.e. 2 X +5 bits
- glutamic acid sulfatide modified then dissolved in the reaction solution, it can form a trimeric structure, this time designed lysyl
- the acid reacts with the sulphur-modified glutamic acid to form an amide bond between the N-peptides, i.e., the lysine represented by X 5 in a compound of formula I in the trimer structure formed by the thioester-modified compound of formula I is formed between an acid or ornithine with a compound of formula I in another back 5 of 5 X (i.e.
- the distance is more suitable, which is conducive to the formation of covalent bonds, and the amino acids in the remaining positions are not suitable for the formation of covalent bonds due to the inappropriate spatial distance and spatial orientation, that is, the amino acids in the remaining positions are due to the spatial distance and The spatial orientation is not suitable and does not affect the formation of covalent bonds.
- natural amino acid is an amino acid selected from the following (a commonly used three-letter symbol and one-letter symbol in parentheses): glycine (Gly, G), proline (Pro, P), alanine (Ala) , A), valine (Val, V), leucine (Leu, L), isoleucine (Ile, I), methionine (Met, M), cysteine (Cys, C ), phenylalanine (Phe, F), tyrosine (Tyr, Y), tryptophan (Trp, W), histidine (His, H), lysine (Lys, K), refined ammonia Acid (Arg, R), glutamine (Gln, Q), asparagine (Asn, N), glutamic acid (Glu, E), aspartic acid (Asp, D), serine (Ser, S) And threonine (Thr, T). If there is a deviation from the commonly used symbol due to a typing
- alkyl refers to a saturated straight or branched chain monovalent hydrocarbon group which may be substituted (single or multiple) or unsubstituted.
- the alkyl group is a C 1-20 alkyl group, more preferably C 1-15 , more preferably a C 1-10 alkyl group, more preferably a C 1-8 alkyl group, more preferably a C 1-6 alkyl group, more A C 1-4 alkyl group is preferred.
- alkyl groups include, for example, methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, n-pentyl, tert-amyl, neopentyl, hexyl Base, n-heptyl and n-octyl groups, etc.
- Suitable substituents include, for example, hydroxy, alkyl, halo, alkoxy, haloalkyl, haloalkoxy, amino, aminoalkyl or cycloalkyl.
- the compounds of the invention may be used either as such or in the form of their derivatives, stereoisomers or salts which are not physiologically toxic.
- the non-physiologically acceptable salt of a compound of Formula I or Formula II includes a pharmaceutically acceptable inorganic or organic acid, or a pharmaceutically acceptable inorganic or organic base Into the salt.
- suitable acid addition salts include with hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid, perchloric acid, fumaric acid, acetic acid, propionic acid, succinic acid, glycolic acid, formic acid, lactic acid, maleic acid, tartaric acid.
- citric acid pamoic acid
- malonic acid hydroxymaleic acid
- phenylacetic acid glutamic acid
- benzoic acid salicylic acid, fumaric acid, toluenesulfonic acid, methanesulfonic acid, naphthalene-2-sulfonic acid, benzene a salt formed from a sulfonic acid, a hydroxynaphthoic acid, hydroiodic acid, malic acid, citric acid or the like.
- suitable base addition salts include sodium, lithium, potassium, magnesium, aluminum, calcium, zinc, N,N'-dibenzylethylenediamine, chloroprocaine, choline, diethanolamine, B.
- a salt formed by a diamine, N-methylglucamine, procaine or the like When a compound of the invention is referred to herein, it includes a compound of formula I or formula II and derivatives thereof, stereoisomers or salts which are not physiologically toxic.
- the pharmaceutical composition comprises a compound of formula I or formula II of the invention together with a conventional pharmaceutical carrier or excipient.
- the pharmaceutical compositions of the present invention can be prepared in a variety of dosage forms, including, but not limited to, tablets, capsules, solutions, suspensions, granules or injections, and the like, by conventional methods in the art.
- the pharmaceutical composition can be administered by any of the following methods: oral, spray inhalation, rectal administration, nasal administration, buccal administration, vaginal administration, topical administration, parenteral administration such as subcutaneous, intravenous, intramuscular, intraperitoneal, intrathecal. Intraventricular, intrasternal, and intracranial injection or input, or by means of an explant reservoir. Among them, oral administration, intraperitoneal or intravenous administration and topical administration are preferred.
- terapéuticaally and/or prophylactically effective amount refers to a sufficient amount of a compound to be a reasonable effect for any medical treatment and/or prophylaxis. It will be appreciated, however, that the total daily usage of the compounds and compositions of the present invention will be decided by the attending physician within the scope of sound medical judgment.
- the particular therapeutically effective dosage level for any particular patient will depend on a number of factors, including the condition being treated and the severity of the disease; the activity of the particular compound employed; the particular composition employed; The age, weight, general health, sex and diet of the patient; the time of administration, the route of administration and the rate of excretion of the particular compound employed; the duration of treatment; the drug used in combination or concurrent with the particular compound employed; Similar factors are known in the medical field. For example, it is the practice in the art that the dosage of the compound be started from a level lower than that required to achieve the desired therapeutic effect, and the dosage is gradually increased until the desired effect is obtained.
- the dosage for mammals may range from 0.001 to 1000 mg/kg body weight per day, such as from 0.01 to 100 mg/kg body weight per day, such as from 0.01 to 10 mg per kg body weight per day.
- the present invention devises a novel covalent bond formation method (chemical modification at a suitable site, using a lactam bond) to obtain a site-covalent cross-linked trimer-assisted sequence, which is then combined with a portion of the native N-peptide. Conjugation allows the conjugated N-peptide to interact with the CHR of the virus, resulting in a covalently cross-linked, newly conjugated N-peptide inhibitor that significantly enhances the inhibitory activity of the N-peptide by covalent cross-linking.
- the N-peptide inhibitor of the present invention has a different mechanism of action, mode of action and target of action than the currently used drugs, and is of great significance for finding a novel HIV-1 fusion inhibitor drug.
- Figure 1 is a schematic cross-sectional view of a trimeric helical structure (compound of formula II) formed by three compounds of formula I, wherein g represents lysine and e represents glutamic acid, and an amide bond is formed between each single peptide.
- Figure 2 is a sample preparation diagram of Example 8.
- AIDS (Acquired Immune Deficiency Syndrome) AIDS, Acquired Immune Deficiency Syndrome
- Env envelope glycoprotein
- HIV Human Immunodeficiency Virus
- HIV-1 human immunodeficiency virus type I HIV-1 human immunodeficiency virus type I
- PBS Phosphate Buffered Saline
- the solid phase synthesis carrier Rink amide resin used in the examples of the present invention is Tianjin Nankai Synthetic Co., Ltd.; HBTU, HOBt, DIEA, EDC hydrochloride and Fmoc protected natural amino acid are Shanghai Jill Biochemical Co., Ltd. and Chengdu Chengnuo New Technology Co., Ltd. company's product.
- Trifluoroacetic acid (TFA) is a product of Beijing Bomaijie Technology Co., Ltd.; DMF and DCM are products of Beijing Bomaijie Technology Co., Ltd.; chromatographic pure acetonitrile is Fisher's product. Other reagents are domestically produced pure products if they are not described.
- the unit "M" used in the examples of the present invention means mol/L.
- Example 1 Preparation of monomeric polypeptide represented by SEQ ID NO: 5
- Peptide synthesis uses the standard Fmoc solid phase method.
- Rink Amide resin was selected and the peptide chain was extended from the C-terminus to the N-terminus.
- the condensing agent is HBTU/HOBt/DIEA.
- the deprotecting agent is a piperidine/DMF solution.
- the peptide sequence was synthesized using a CS Bio peptide synthesizer, and finally the N-terminus of the polypeptide was blocked with acetic anhydride reagent acetate.
- the cleavage agent is trifluoroacetic acid/ethylenedithiol/m-cresol (TFA/EDT/m-cresol), and the crude peptide is dissolved in water and stored by lyophilization.
- Deprotecting agent 20v/v% piperidine in DMF solution
- Blocking reagent 20 v/v% acetic anhydride in DMF solution.
- Rink Amide resin 0.53g (0.23mmol) was weighed into the CS Bio automatic peptide synthesizer reactor, and then the protected amino acid, activator, activated base, deprotecting reagent, and blocking reagent were configured at the above concentrations, and then CS Bio was used. Automated peptide synthesizer for synthesis. After completion, the peptide resin was washed 3 times with DMF, then shrunk with anhydrous methanol, and dried under vacuum at room temperature to obtain about 2.02 g of a peptide resin.
- the resulting crude peptide was purified by medium pressure or high pressure chromatography.
- the column was a C8 column and the eluent was acetonitrile, water and a small amount of acetic acid.
- the column was previously equilibrated with 200 ml of a mixed solution of acetonitrile solution and water containing 0.1 v/v% acetic acid (wherein the volume percentage of acetonitrile solution and water were 15% and 85%, respectively).
- the mixture was washed with 200 ml of a mixed solution of acetonitrile solution and water containing 0.1 v/v% acetic acid (15% and 85% by volume of acetonitrile solution and water, respectively), and the fraction of the eluate was detected by high performance liquid chromatography. According to the liquid phase test results, the acetonitrile content is gradually increased until the purified polypeptide is The peak is eluted. The eluates were combined, and most of the solvent was removed by rotary evaporation, and the pure N peptide was freeze-dried, and the content of HPLC detection was more than 80%.
- the N-peptide is purified by reverse phase preparative liquid phase.
- the specific method is as follows: the intermediate-purified N-peptide is dissolved in 2 ml of acetonitrile and 8 ml of pure water, filtered through a 0.25 ⁇ m pore size filter, and then subjected to gradient elution. .
- the phase A of the eluent is 0.1v/v% aqueous solution of trifluoroacetic acid; the phase B is a mixed solution of 0.1v/v% trifluoroacetic acid in acetonitrile solution and water (wherein the volume percentage of acetonitrile solution and water is 70% and 30%).
- the reverse phase preparation liquid phase was first equilibrated with a mixed solution of 20 v/v% B phase and 80 v/v% A phase for 5 min. After loading, the elution gradient was adjusted as needed, and the content of phase B was gradually increased until the purified polypeptide was obtained. The main peak is eluted. The eluates detected by HPLC were greater than 95%, and most of the solvent was removed by rotary evaporation, and the pure N peptide was lyophilized.
- Example 3 Preparation of a covalently crosslinked polypeptide represented by (SEQ ID NO: 1) 3
- the monomer polypeptide sequence was synthesized as in the monomeric polypeptide of SEQ ID NO: 5 in Example 1, but when the resin was attached to the amino acid, the site-requiring E was replaced by E(OAll). After the sequence was synthesized on the resin, it was not cleaved and the following further chemical modification was performed.
- the polypeptide resin after removing the side chain protecting group was added, and 275 ⁇ l of benzyl mercaptan, 315 mg of HOBt, and 450 mg of EDC hydrochloride were dissolved in a mixed solvent of 5 ml of DMF and 5 ml of DCM, and then added to the reactor for 6 hours. After that, the reaction solvent was drained, and 275 ⁇ l of benzyl mercaptan, 315 mg of HOBt, and 450 mg of EDC hydrochloride were again dissolved in a mixed solvent of 5 ml of DMF and 5 ml of DCM, and added to the reactor. After 12 hours of reaction, finally, DMF, DCM, and MeOH were respectively used. Wash, wash each solution twice and drain.
- the purified thioester-modified N-peptide is dissolved in a reaction solvent (30% PBS/70% H 2 O) at a concentration of about 1 mg/ml, and reacted at 37 ° C for 40 hours.
- the reaction is detected by HPLC to complete, and then The target N peptide was purified under reverse purification conditions for preparative high-performance liquid phase, and the purity was greater than 95%.
- the prepared N-peptide solution is added to the cuvette, and the helical absorption value (without the blank control absorption value) is measured in a circular dichroism spectroscopy instrument, and converted into helicity according to the following formula:
- concentration (c) refers to the concentration value of the N-peptide solution
- path (L) refers to the reference cell length
- number of residues (N) refers to the number of amide bonds of the N-peptide.
- Example 8 Compound inhibition of HIV-1-mediated cell - cell fusion activity evaluation (IC 50)
- the cell cryotube was taken out from the liquid nitrogen, and the temperature was rapidly raised in a 37 ° C water bath.
- the cell cryopreservation solution (1 ml) was taken out, added to a 15 ml centrifuge tube, and 1 ml of the medium (purchased from Shanghai Lifei Biotechnology Co., Ltd.) was added and centrifuged ( 800 rpm, 10 min), the medium was removed, 1 ml of fresh medium was added again, and the cells were uniformly suspended by light blowing, and the cell suspension was completely transferred to a 75 cm 2 culture flask containing 15 ml of medium at 37 ° C, 5% CO 2 . Under cultivation.
- the TZM-bl cells (supplied by the NIH AIDS Research and Reference Reagent Program) were diluted to 500,000/ml, and placed in a 96-well cell culture plate at 50 ⁇ l/well for 24 hours.
- the test compound is diluted four times in the (1-10) column of the 96-well plate, 11 columns and 12 columns are blank solvents (blank solvent contains only medium, no sample to be tested, 11 of which are positive controls, TZM-bl cells and HL2/3 cells mixed at a concentration of 1:3 without sample inhibitors) ; 12 is a negative control, is the chemiluminescence signal of a single TZM-bl cell); DMSO content ⁇ 6%.
- Sample preparation instructions (see Figure 2): Four samples were prepared for each 96-well sample plate (12 holes per row, 8 rows; Costar 3799, Corning Incorporation, USA), and each sample was repeated once, as shown in Figure 2.
- the sample of the selected concentration was placed in the S1 well, and the sequence was diluted 4 times (ie, the sample concentration of the latter well was 1/4 of the previous well), and 10 concentration gradients were diluted accordingly.
- the last two wells contained control medium only as the control, in which the 11th well contained the target cells and the effector cells were 100% fusion control (positive control), and the 12th well contained only the target cells as the unfused background control (negative control).
- step D Immediately take the 20 ⁇ l/well sample from step B and add to the cell plate for 6 hours.
- LA buffer (Luciferase Assay Buffer, Promega Cooperation, USA) was added to the LA substrate (Luciferase Assay Substrate, Promega Cooperation, USA) and mixed, and 40 ⁇ l/well was added to the 96-well phosphor plate.
- the activity measurement results are shown in Table 2 below.
- the data in Table 2 shows that the activity of the N-peptide after covalent cross-linking is significantly improved, and the best activity reaches a low nanomolar level.
- T20, C34 is a C-peptide fusion inhibitor as an experimental control for cell fusion activity.
- T20 is a marketed drug
- C34 is a well-stabilized and stable fusion inhibitor in the laboratory.
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Abstract
Description
本发明属于生物医药领域,涉及抗人免疫缺陷病毒(HIV)感染的多肽、其衍生物、立体异构体、或无生理毒性的盐。本发明还涉及含有上述多肽、其衍生物、立体异构体、或无生理毒性的盐的药物组合物,以及所述多肽、其衍生物、立体异构体、或无生理毒性的盐在制备治疗和/或预防和/或辅助治疗HIV感染所致相关疾病尤其是获得性免疫缺陷综合征(AIDS,即艾滋病)的药物中的用途。The invention belongs to the field of biomedicine and relates to a polypeptide against human immunodeficiency virus (HIV) infection, a derivative thereof, a stereoisomer, or a salt which is not physiologically toxic. The present invention also relates to a pharmaceutical composition comprising the above polypeptide, a derivative thereof, a stereoisomer, or a salt which is not physiologically toxic, and a preparation of the polypeptide, a derivative thereof, a stereoisomer, or a salt which is not physiologically toxic in preparation Use in the treatment and/or prevention and/or adjuvant treatment of diseases associated with HIV infection, especially in the acquisition of immunodeficiency syndrome (AIDS).
艾滋病主要是由人免疫缺陷病毒1型(HIV-1)感染所导致的致死性高的传染性疾病,其流行广,传播快。目前该病尚不能根治且缺乏有效疫苗,药物治疗仍是目前唯一有效的方法。临床上应用抗HIV-1药物,辅以高效抗逆转录病毒疗法,可以在一定程度上延长HIV感染者的生存时间和改善其生活质量。但是,由于HIV疫苗研究进展缓慢以及耐药性问题日益明显,研发新型抗HIV药物即具有新的作用机制和新的作用靶点的药物仍是当务之急。AIDS is mainly a highly lethal infectious disease caused by human immunodeficiency virus type 1 (HIV-1) infection, which is widespread and spreads rapidly. At present, the disease is still unable to cure and lacks an effective vaccine. Drug treatment is still the only effective method at present. The clinical application of anti-HIV-1 drugs, supplemented by highly active antiretroviral therapy, can prolong the survival time and improve the quality of life of HIV-infected patients to some extent. However, due to the slow progress of HIV vaccine research and the increasing awareness of drug resistance, it is still a top priority to develop new anti-HIV drugs with new mechanisms of action and new targets.
HIV融合抑制剂(HIV fusion inhibitors)是干扰病毒进入靶细胞的新型抗HIV药物,其在感染的初始环节切断病毒的传播,这对于预防及控制HIV-1感染具有特殊意义,因而成为新机制抗HIV药物研究的热点。HIV fusion inhibitors are novel anti-HIV drugs that interfere with the entry of viruses into target cells. They cut off the spread of the virus at the initial stage of infection, which has special significance for the prevention and control of HIV-1 infection, and thus becomes a new mechanism. Hot spots in HIV drug research.
Gp41是介导HIV-1病毒与靶细胞膜融合的特异性蛋白,是融合抑制剂的主要作用靶标。Gp41的胞外区存在着两个与膜融合密切相关的螺旋结构功能区,即N末端重复序列(简称为HR1、NHR或N肽)和C末端重复序列(简称为HR2、CHR或C肽)。在膜融合过程中,三个gp41分子中的HR2与HR1相互作用,形成一个六螺旋体核心结构(6-HB)。该gp41分子内形成的6-HB是整个融合的核心结构,其晶体结构是设计融合抑制剂的基础和基本模型。通过设计肽融合抑制剂 与gp41分子相应的螺旋区序列作用,阻碍该内源性6HB的形成,从而阻断病毒和细胞的融合。Gp41 is a specific protein that mediates the fusion of HIV-1 virus with target cell membranes and is a major target for fusion inhibitors. There are two helical structural domains closely related to membrane fusion in the extracellular domain of Gp41, namely the N-terminal repeat (abbreviated as HR1, NHR or N-peptide) and the C-terminal repeat (abbreviated as HR2, CHR or C peptide). . During membrane fusion, HR2 in three gp41 molecules interacts with HR1 to form a hexagonal core structure (6-HB). The 6-HB formed in the gp41 molecule is the core structure of the whole fusion, and its crystal structure is the basic and basic model for designing fusion inhibitors. Designing peptide fusion inhibitors The action of the helical region sequence corresponding to the gp41 molecule blocks the formation of the endogenous 6HB, thereby blocking the fusion of the virus and the cell.
基于天然C肽序列的融合抑制剂活性较高,IC50可达纳摩尔水平,因此已进入临床开发的融合抑制剂均为C肽及其衍生物,典型的C肽融合抑制剂有T20和C34,二者都来自gp41的CHR天然序列的多肽,这些C肽类药物的作用靶标均为NHR三聚体。研究人员通过优化gp41天然序列,设计出新一代融合抑制剂,这些抑制剂大都以C34为模板。与T20相比,新抑制剂的活性和稳定性都有很大改善,其中取得良好临床结果的有T1144和西夫韦肽。虽然新开发的融合抑制剂能高效抑制已有流行T20抗性毒株,但对T20的交叉抗性还是经常出现。由于靶标相同,这些交叉抗性预期在这些新药进入临床使用后会更加明显。因此开发针对不同靶标序列,具有新颖结构和作用机制的融合抑制剂应是将来这类药物研发的重点。Fusion inhibitors based on natural C-peptide sequences have high activity and IC 50 can reach nanomolar levels. Therefore, the fusion inhibitors that have entered clinical development are both C-peptides and their derivatives. Typical C-peptide fusion inhibitors are T20 and C34. Both are derived from the polypeptide of the CHR native sequence of gp41, and the target of action of these C-peptide drugs are all NHR trimers. By optimizing the native sequence of gp41, the researchers designed a new generation of fusion inhibitors, most of which use C34 as a template. Compared with T20, the activity and stability of the new inhibitors have been greatly improved, among which T1144 and Sifuvirtide have achieved good clinical results. Although newly developed fusion inhibitors can efficiently inhibit existing T20 resistant strains, cross-resistance to T20 is often present. Because of the same target, these cross-resistances are expected to become more pronounced after these new drugs enter clinical use. Therefore, the development of fusion inhibitors with novel structures and mechanisms of action for different target sequences should be the focus of future drug development.
基于病毒gp41的NHR设计的N肽融合抑制剂是另一个发展方向。从上述三个gp41分子内折叠形成6HB的结构和机制中可知,CHR和NHR互为配基,二者具备特异性相互作用的特质,形成6HB并放出能量,驱动完成病毒与细胞的融合。迄今,虽然N肽融合抑制剂尚无品种进入临床研究,但首个报道的融合抑制剂DP107就是N肽。这从另一侧面表明其研究问题更多,难度更大。N肽的活性一般在微摩尔水平,比对应的C肽低约1000倍。根据6HB晶体结构和作用机制推断,N-肽融合抑制剂通过两种方式抑制gp41分子内6HB形成,进而阻断HIV与细胞的融合过程:1)外源性N肽三聚体与gp41中CHR作用,形成异源6HB,使得gp41不能分子内折叠,中断融合;2)单链N肽嵌合在NHR中,形成杂合三聚体,抑制gp41分子内6HB形成。相比而言,以第1种方式为作用机制的N肽抑制剂的活性更高,两种方式的活性相差1到3个数量级。所以,研究人员利用各种方法使得N肽融合抑制剂主要通过第一种方式抑制gp41分子内6HB形成,但问题是N肽片段本身难以形成活性构象的稳定三聚体(N3螺旋),同时其表面含有较多的疏水残基,在生理条件下容易聚集而失活。因此,N肽融合抑制剂的研究主要 是如何稳定其三聚体和改善理化性能。从研发药物角度来看,CHR和NHR可互为靶标,N肽融合抑制剂以gp41中CHR为靶标,与T20(恩夫韦肽)、Maraviroc两种上市的融合抑制剂药物的作用机理完全不同,是避免或减缓与现有药物产生交叉抗药性的有效途径之一。N-peptide fusion inhibitors based on the viral gp41-based NHR design are another development direction. From the structure and mechanism of the above three gp41 molecules to form 6HB, CHR and NHR are ligands, and the two have specific interaction characteristics, forming 6HB and releasing energy, driving the fusion of virus and cells. To date, although the N-peptide fusion inhibitor has not yet entered the clinical study, the first reported fusion inhibitor DP107 is the N-peptide. This shows from another side that its research problems are more and more difficult. The activity of the N-peptide is generally at the micromolar level, about 1000 times lower than the corresponding C-peptide. Based on the structure and mechanism of action of 6HB, N-peptide fusion inhibitors inhibit the formation of 6HB in gp41 molecules in two ways, thereby blocking the fusion process between HIV and cells: 1) exogenous N-peptide trimer and CHR in gp41 Role, the formation of heterologous 6HB, so that gp41 can not be intramolecular folding, interrupt the fusion; 2) single-stranded N-peptide complexed in NHR, forming a heterotrimer, inhibiting the formation of 6HB in gp41 molecule. In contrast, the N-peptide inhibitors that act in the first mode are more active, and the activities of the two methods differ by one to three orders of magnitude. Therefore, the researchers used various methods to make the N-peptide fusion inhibitor inhibit the formation of 6HB in gp41 molecule mainly by the first method, but the problem is that the N-peptide fragment itself is difficult to form a stable conformer (N3 helix) of active conformation, and The surface contains more hydrophobic residues, which are easily aggregated and inactivated under physiological conditions. Therefore, the research of N-peptide fusion inhibitors is mainly How to stabilize its trimer and improve physical and chemical properties. From the perspective of R&D drugs, CHR and NHR can be mutually targets. N-peptide fusion inhibitors target CHR in gp41, which is completely different from T20 (enfuvirtide) and Maraviroc. Is one of the effective ways to avoid or slow the cross-resistance with existing drugs.
目前,也有提高N肽抑制活性的相关研究,一般的方法是将天然的N肽片段与能形成稳定三螺旋结构的辅助多肽缀合,或使用二硫键连接上述设计的缀合N肽,形成不可逆三聚体N肽,这样可以提高N肽抑制剂活性2-3个数量级。但上述方法也有自身的缺陷:单链的N肽活性较低,易于聚集而沉淀;缀合辅助多肽,使得缀合后N肽序列冗长;二硫键交联虽然可以提高N肽活性,但是交联反应位点和反应专一性不可控,等等。以上缺陷都限制了N肽抑制剂的发展,使之距离成药还有很长的距离。At present, there are also related studies for improving the inhibitory activity of N-peptide. The general method is to conjugate a natural N-peptide fragment to a helper polypeptide capable of forming a stable triple helix structure, or to use a disulfide bond to link the above-designed conjugated N-peptide to form Irreversible trimeric N-peptides, which increase the activity of N-peptide inhibitors by 2-3 orders of magnitude. However, the above method also has its own drawbacks: the single-stranded N-peptide has low activity and is easy to aggregate and precipitate; the conjugation of the helper polypeptide makes the N-peptide sequence conjugated to be verbose; the disulfide-crosslinking can increase the activity of the N-peptide, but Linkage reaction sites and reaction specificity are uncontrollable, and so on. All of the above drawbacks limit the development of N-peptide inhibitors, which are still a long way from the drug.
发明内容Summary of the invention
本发明从头设计了一段可稳定形成三螺旋结构的人工辅助序列,并且设计出新的共价键形成方法,在适当的位点进行化学修饰,利用内酰胺键,得到了定点共价交联的三聚体辅助序列,之后将其与部分天然N肽缀合,使得缀合后的N肽能够和病毒的CHR作用,得到共价交联的新缀合的N肽抑制剂,由此完成了本发明。本发明基于新的设计思路和新的共价键形成方法,设计出了新颖的N肽抑制剂,提高了N肽的抑制活性。The invention de novo has designed an artificial auxiliary sequence which can stably form a triple helix structure, and designs a new covalent bond forming method, chemically modifying at a suitable site, and using a lactam bond to obtain a fixed-point covalent cross-linking. A trimer-assisted sequence, which is then conjugated to a portion of the native N-peptide, such that the conjugated N-peptide is capable of interacting with the CHR of the virus, resulting in a covalently cross-linked, newly conjugated N-peptide inhibitor, thereby completing this invention. The invention is based on a novel design idea and a new covalent bond formation method, and designs a novel N-peptide inhibitor to improve the inhibitory activity of the N-peptide.
本发明第一方面涉及式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐,A first aspect of the invention relates to a compound of formula I or formula II, a derivative thereof, a stereoisomer or a salt of no physiological toxicity,
Z-X1X2IX3X4IEQX5IX6X7IEQRIQQIEQX8X9X10X11X12X13X14X15X16X17X18X19X20X21LLQLTVWGIKQLQARIL-B(I)ZX 1 X 2 IX 3 X 4 IEQX 5 IX 6 X 7 IEQRIQQIEQX 8 X 9 X 10 X 11 X 12 X 13 X 14 X 15 X 16 X 17 X 18 X 19 X 20 X 21 LLQLTVWGIKQLQARIL-B(I)
(Z-X1X2IX3X4IEQX5IX6X7IEQRIQQIEQX8X9X10X11X12X13X14X15X16X17X18X19X20X21LLQLTVWGIKQLQARIL-B)3(II)(ZX 1 X 2 IX 3 X 4 IEQX 5 IX 6 X 7 IEQRIQQIEQX 8 X 9 X 10 X 11 X 12 X 13 X 14 X 15 X 16 X 17 X 18 X 19 X 20 X 21 LLQLTVWGIKQLQARIL-B) 3 (II )
其中:among them:
式II所示的化合物为三个式I所示的化合物通过两两共价交联形 成的三聚体,The compound of formula II is a compound of three formula I which is covalently crosslinked by two a trimer,
X1缺失或者选自L型天然氨基酸,X 1 is deleted or selected from L-type natural amino acids,
X2、X3、X4、X6、X7各自独立地选自天然L型天然氨基酸,X 2 , X 3 , X 4 , X 6 , and X 7 are each independently selected from natural L-type natural amino acids,
X5选自L型天然氨基酸、L型非天然氨基酸,X 5 is selected from the group consisting of L-type natural amino acids and L-type unnatural amino acids.
X8、X9、X10、X11、X12、X13、X14、X15、X16、X17、X18、X19、X20、X21各自独立地选自L型天然氨基酸,X 8 , X 9 , X 10 , X 11 , X 12 , X 13 , X 14 , X 15 , X 16 , X 17 , X 18 , X 19 , X 20 , X 21 are each independently selected from L-type natural amino acid ,
X8、X9、X10、X11、X12、X13、X14同时存在或同时缺失,X 8 , X 9 , X 10 , X 11 , X 12 , X 13 , X 14 exist simultaneously or simultaneously,
X15、X16、X17、X18、X19、X20、X21同时存在或同时缺失,X 15 , X 16 , X 17 , X 18 , X 19 , X 20 , X 21 exist simultaneously or simultaneously,
Z代表N末端基团,可以为-NH2、-NR1C(O)R2、C1-6烷基、C1-6烷氧基或-L-R3,Z represents an N-terminal group and may be -NH 2 , -NR 1 C(O)R 2 , C 1-6 alkyl, C 1-6 alkoxy or -LR 3 ,
其中,R1和R2独立地选自H和烷基,Wherein R 1 and R 2 are independently selected from H and an alkyl group,
L为连接片段,选自二元羧酸(例如乙二酸、丙二酸、丁二酸等),将N末端衍生出羧基并与带有羟基基团的R3成酯,L is a linking fragment selected from a dicarboxylic acid (eg, oxalic acid, malonic acid, succinic acid, etc.), derivatized with a carboxyl group at the N-terminus and esterified with R 3 having a hydroxyl group,
R3为R’OH、PEG、胆固醇等可以和羧基反应且不影响交联反应的基团,其中R’为烷基,R 3 is a group which can react with a carboxyl group such as R′OH, PEG, cholesterol, etc., and does not affect the crosslinking reaction, wherein R′ is an alkyl group,
B代表C末端基团,可以为-COOH或-C(O)NR4R5,其中,R4和R5独立地选自H和烷基,优选R4和R5同时为H。B represents a C-terminal group and may be -COOH or -C(O)NR 4 R 5 , wherein R 4 and R 5 are independently selected from H and an alkyl group, and preferably R 4 and R 5 are both H.
在本发明的一个实施方案中,本发明第一方面所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐,其中所述的共价交联是在一个式I化合物中的X5与另一个式I化合物中X5后面第5位的谷氨酸之间形成共价键,或者所述的共价交联是在一个式I化合物中的X2与另一个式I化合物中X2后面第5位的谷氨酸之间形成共价键,所述共价键优选为酰胺键(-NC(O)-)。In one embodiment of the invention, the compound of Formula I or Formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, according to the first aspect of the invention, wherein said covalent cross-linking Is a covalent bond formed between X 5 in one compound of formula I and another glutamic acid at position 5 after X 5 in another compound of formula I, or the covalent cross-linking is in a compound of formula I X 2 forms a covalent bond with another glutamic acid at the 5th position after X 2 in the compound of the formula I, and the covalent bond is preferably an amide bond (-NC(O)-).
在本发明的一个实施方案中,本发明第一方面所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐,其中所述的天然L型天然氨基酸选自甘氨酸(Gly)、丙氨酸(Ala)、亮氨酸(Leu)、异亮氨酸(Ile)、谷氨酸(Glu)、谷氨酰胺(Gln)、天冬氨酸(Asp)、天冬酰胺(Asn)、缬氨酸(Val)、赖氨酸(Lys)、丝氨酸(Ser)、苏氨酸(Thr)、精氨酸(Arg)、组氨酸(His)、色氨酸(Trp)、酪氨酸 (Tyr),In one embodiment of the invention, the compound of Formula I or Formula II, a derivative, a stereoisomer or a non-physiologically toxic salt thereof, according to the first aspect of the invention, wherein said natural L-form natural The amino acid is selected from the group consisting of glycine (Gly), alanine (Ala), leucine (Leu), isoleucine (Ile), glutamic acid (Glu), glutamine (Gln), and aspartic acid (Asp). ), asparagine (Asn), valine (Val), lysine (Lys), serine (Ser), threonine (Thr), arginine (Arg), histidine (His), color Amino acid (Trp), tyrosine (Tyr),
所述的L型非天然氨基酸为鸟氨酸(Orn,O)。The L-type unnatural amino acid is ornithine (Orn, O).
在本发明的一个实施方案中,本发明第一方面所述权利要求1的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐,其中:In one embodiment of the invention, the compound of Formula I or Formula II of Claim 1 of the first aspect of the invention, a derivative thereof, a stereoisomer or a salt of no physiological toxicity, wherein:
X1为色氨酸(Trp),X 1 is tryptophan (Trp),
X2选自精氨酸(Arg)、赖氨酸(Lys)和鸟氨酸(Orn),X 2 is selected from the group consisting of arginine (Arg), lysine (Lys) and ornithine (Orn).
X3选自谷氨酰胺(Gln)和组氨酸(His),X 3 is selected from the group consisting of glutamine (Gln) and histidine (His).
X4选自谷氨酰胺(Gln)和组氨酸(His),X 4 is selected from the group consisting of glutamine (Gln) and histidine (His).
X5选自精氨酸(Arg)、赖氨酸(Lys)和鸟氨酸(Orn),X 5 is selected from the group consisting of arginine (Arg), lysine (Lys) and ornithine (Orn).
且X2和X5不同时为精氨酸(Arg),And X 2 and X 5 are not simultaneously arginine (Arg),
X6选自谷氨酰胺(Gln)和组氨酸(His),X 6 is selected from the group consisting of glutamine (Gln) and histidine (His).
X7选自谷氨酰胺(Gln)和组氨酸(His),X 7 is selected from the group consisting of glutamine (Gln) and histidine (His).
X8为精氨酸(Arg),X 8 is arginine (Arg),
X9为异亮氨酸(Ile),X 9 is isoleucine (Ile),
X10为谷氨酰胺(Gln),X 10 is glutamine (Gln),
X11为谷氨酰胺(Gln),X 11 is glutamine (Gln),
X12为异亮氨酸(Ile),X 12 is isoleucine (Ile),
X13为谷氨酸(Glu),X 13 is glutamic acid (Glu),
X14为谷氨酰胺(Gln),X 14 is glutamine (Gln),
X15为精氨酸(Arg),X 15 is arginine (Arg),
X16为异亮氨酸(Ile),X 16 is isoleucine (Ile),
X17为谷氨酸(Glu),X 17 is glutamic acid (Glu),
X18为丙氨酸(Ala),X 18 is alanine (Ala),
X19为谷氨酰胺(Gln),X 19 is glutamine (Gln),
X20为谷氨酰胺(Gln),X 20 is glutamine (Gln),
X21为组氨酸(His)。X 21 is histidine (His).
在本发明的一个实施方案中,本发明第一方面所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐,其中所述
的共价交联是在一个式I化合物中的X5代表的赖氨酸或鸟氨酸与另一个式I化合物中X5后面第5位的谷氨酸之间形成酰胺键(-NC(O)-),或者所述的共价交联是在一个式I化合物中的X2代表的赖氨酸或鸟氨酸与另一个式I化合物中X2后面第5位的谷氨酸之间形成酰胺键(-NC(O)-)。In one embodiment of the invention, the compound of Formula I or Formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, according to the first aspect of the invention, wherein said covalent cross-linking Is the amide bond (-NC(O)-) formed by the lysine or ornithine represented by X 5 in the compound of the formula I and the glutamic acid at the 5th position after the X 5 in the compound of the formula I, Or the covalent cross-linking is the formation of an amide bond between lysine or ornithine represented by X 2 in a compound of formula I and another glutamic acid at
在本发明的一个实施方案中,本发明第一方面所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐,其选自如下的化合物:In one embodiment of the invention, the compound of Formula I or Formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, according to the first aspect of the invention, is selected from the group consisting of:
本发明的第二方面涉及一种核酸分子,其编码前述本发明第一方面任一项所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐。A second aspect of the invention relates to a nucleic acid molecule encoding a compound of the above formula I or formula II according to any one of the first aspects of the invention, a derivative thereof, a stereoisomer or a salt of no physiological toxicity. .
本发明的第三方面涉及一种重组载体,其含有本发明第二方面所述的核酸分子。在本发明中,所述载体可以为原核表达载体或真核表达载体。A third aspect of the invention relates to a recombinant vector comprising the nucleic acid molecule of the second aspect of the invention. In the present invention, the vector may be a prokaryotic expression vector or a eukaryotic expression vector.
本发明的第四方面涉及一种宿主细胞,其含有本发明第二方面所述的核酸分子和/或本发明第三方面所述的重组载体。在本发明中,所述细胞例如为原核细胞(例如大肠杆菌)或真核细胞(例如酵母细胞、昆虫细胞、哺乳动物细胞)。A fourth aspect of the invention relates to a host cell comprising the nucleic acid molecule of the second aspect of the invention and/or the recombinant vector of the third aspect of the invention. In the present invention, the cells are, for example, prokaryotic cells (e.g., E. coli) or eukaryotic cells (e.g., yeast cells, insect cells, mammalian cells).
本发明的第五方面涉及一种药物组合物,其含有至少一种前述本发明第一方面任一项所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐,或者其含有至少一种本发明第二方面所述的核酸分子,任选地,其还含有药学上可接受的载体或赋形剂。A fifth aspect of the invention relates to a pharmaceutical composition comprising at least one compound of the above formula I or formula II according to any one of the first aspects of the invention, a derivative thereof, a stereoisomer or none A physiologically toxic salt, or it comprises at least one nucleic acid molecule of the second aspect of the invention, optionally further comprising a pharmaceutically acceptable carrier or excipient.
本发明的第六方面涉及前述本发明第一方面任一项所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐或者第二方面所述的核酸分子或者本发明第五方面所述的药物组合物在制备用于治疗和/或预防和/或辅助治疗HIV感染相关疾病(特别是艾滋病)的药物中的用途。A sixth aspect of the invention relates to the compound of the formula I or the formula II, the derivative, the stereoisomer or the non-physiologically-soluble salt thereof according to any one of the first aspects of the invention, or the second aspect Use of a nucleic acid molecule or a pharmaceutical composition according to the fifth aspect of the invention for the manufacture of a medicament for the treatment and/or prevention and/or adjuvant treatment of a disease associated with HIV infection, in particular AIDS.
本发明的第七方面涉及前述本发明第一方面任一项所述的式I或 式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐或者第二方面所述的核酸分子或者本发明第五方面所述的药物组合物在制备用于抑制HIV(例如HIV-1)与细胞融合的药物中的用途。A seventh aspect of the invention relates to the above formula I according to any of the first aspects of the invention or A compound of the formula II, a derivative thereof, a stereoisomer or a non-physiologically toxic salt or the nucleic acid molecule of the second aspect or the pharmaceutical composition of the fifth aspect of the invention is prepared for inhibiting HIV (for example) Use of HIV-1) in cells fused to cells.
本发明的第八方面涉及一种在体内或体外抑制HIV(例如HIV-1)与细胞融合的方法,所述方法包括使用有效量的至少一种前述本发明第一方面任一项所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐或者第二方面所述的核酸分子或者本发明第五方面所述的药物组合物的步骤。An eighth aspect of the invention relates to a method of inhibiting HIV (e.g., HIV-1)-cell fusion in vivo or in vitro, the method comprising using an effective amount of at least one of the aforementioned first aspects of the first aspect of the invention A step of the compound of Formula I or Formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, or the nucleic acid molecule of the second aspect or the pharmaceutical composition of the fifth aspect of the invention.
本发明的第九方面涉及一种治疗和/或预防和/或辅助治疗HIV感染相关疾病(特别是艾滋病)的方法,所述方法包括给予需要这种治疗的患者治疗和/或预防有效量的至少一种前述本发明第一方面任一项所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐或者第二方面所述的核酸分子或者本发明第五方面所述的药物组合物的步骤。A ninth aspect of the invention relates to a method of treating and/or preventing and/or adjuvant treatment of a disease associated with HIV infection, in particular AIDS, comprising administering to a patient in need of such treatment a therapeutically and/or prophylactically effective amount At least one compound of the above formula I or formula II, a derivative, a stereoisomer or a non-physiologically acceptable salt thereof, or a nucleic acid molecule according to the second aspect or the present invention The step of the pharmaceutical composition of the fifth aspect of the invention.
本发明还涉及前述本发明第一方面任一项所述的式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐,所述式I或式II所示的化合物、其衍生物、立体异构体或无生理毒性的盐用于抑制HIV(例如HIV-1)与细胞融合,或者用于治疗和/或预防和/或辅助治疗HIV感染相关疾病(特别是艾滋病)。The present invention also relates to the compound of the above formula I or formula II, a derivative thereof, a stereoisomer or a non-physiologically toxic salt according to any one of the first aspects of the invention, wherein the formula I or formula II is a compound, a derivative thereof, a stereoisomer or a non-physiologically toxic salt for inhibiting HIV (e.g., HIV-1) and cell fusion, or for treating and/or preventing and/or adjuvant treatment of HIV infection-related diseases (especially It is AIDS).
在本发明的实施方案中,其中所述的HIV是指人类免疫缺陷病毒(Human Immunodeficiency Virus,HIV),包括HIV-1型病毒和HIV-2型病毒,优选为HIV-1型病毒。In an embodiment of the invention, wherein said HIV refers to Human Immunodeficiency Virus (HIV), including HIV-1 virus and HIV-2 virus, preferably HIV-1 virus.
在本发明的实施方案中,其中所述的艾滋病即为获得性免疫缺陷综合征(acquired immunodeficiency syndrome,AIDS)。In an embodiment of the invention, the AIDS is an acquired immunodeficiency syndrome (AIDS).
HIV-1病毒的Gp41的胞外区存在着两个与膜融合密切相关的螺旋结构功能区,即N末端重复序列(HR1)和C末端重复序列(HR2)。在膜融合过程中,三个gp41分子中的HR2与HR1相互作用,形成一个六螺旋体核心结构(6-HB)。在6-HB核心结构中,3个N肽(即N末端重复序列的36肽,N36)形成位于中心的三聚体复合螺旋核,也称 为N螺旋三聚体,或简称三聚体。The extracellular domain of Gp41 of HIV-1 virus has two helical structural domains closely related to membrane fusion, namely the N-terminal repeat (HR1) and the C-terminal repeat (HR2). During membrane fusion, HR2 in three gp41 molecules interacts with HR1 to form a hexagonal core structure (6-HB). In the 6-HB core structure, three N-peptides (ie, the 36-peptide of the N-terminal repeat, N36) form a centrally located trimer complex helix core, also called It is an N-helix trimer, or a trimer for short.
本发明的式I化合物为N肽衍生物,因此在本发明中也可以将式I化合物称为N肽。本发明的式II化合物在三条式I化合物所示的多肽之间形成了共价交联,从而形成了更加稳定和具有更高活性的三聚体化合物。The compound of the formula I of the present invention is an N-peptide derivative, and therefore the compound of the formula I can also be referred to as an N-peptide in the present invention. The compounds of formula II of the present invention form covalent cross-linking between the three polypeptides of the compound of formula I, thereby forming a more stable and more active trimer compound.
在本发明的实施方案中,其中所述的共价交联是在一个式I化合物中的X5代表的赖氨酸或鸟氨酸与另一个式I化合物中X5后面第5位(即X5+5位)的谷氨酸之间形成酰胺键(-NC(O)-),或者所述的共价交联是在一个式I化合物中的X2代表的赖氨酸或鸟氨酸与另一个式I化合物中X2后面第5位(即X2+5位)的谷氨酸之间形成酰胺键(-NC(O)-)。在本发明的具体实施方案中,两条式I所示化合物之间可以形成一个酰胺键,因此在形成的三聚体中,三条式I所示化合物之间两两共价相联,可以形成三个酰胺键,由此达到稳定三聚体的目的。In an embodiment of the invention, wherein said covalent crosslinking is lysine or ornithine represented by X 5 in one compound of formula I and the fifth position after X 5 in another compound of formula I (ie An amide bond (-NC(O)-) is formed between the glutamic acid at the X 5 +5 position, or the covalent cross-linking is a lysine or avian ammonia represented by X 2 in a compound of the formula I formation of an amide bond (-NC (O) -) between an acid of formula I and another compound of 5 X 2 behind (i.e. position X 2 +5) glutamic acid. In a specific embodiment of the present invention, an amide bond may be formed between the two compounds of the formula I, so that among the trimers formed, three compounds of the formula I may be covalently linked to each other to form a bond. Three amide bonds, thereby achieving the purpose of stabilizing the trimer.
本发明式I化合物可以采用标准的Fmoc固相方法合成,选用Rink Amide树脂,肽链由C端向N端延长。缩合剂可采用HBTU/HoBt/DIEA。脱保护剂可采用哌啶/DMF溶液。可以利用CS Bio多肽合成仪合成肽序列,最后多肽的N端用乙酸酐试剂乙酸化封端。裂解剂可采用三氟乙酸/乙二硫醇/间甲酚(TFA/EDT/m-cresol),粗肽用水溶解后冻干保存。可用中压液相色谱法或高压液相色谱法(HPLC)进行分离纯化,纯肽含量>95%,用基质辅助激光解析飞行时间质谱(MALDI-TOF-MS)确定肽序列分子量。The compound of the formula I of the present invention can be synthesized by a standard Fmoc solid phase method, and a Rink Amide resin is selected, and the peptide chain is extended from the C terminal to the N terminal. The condensing agent can be HBTU/HoBt/DIEA. The deprotecting agent can be a piperidine/DMF solution. The peptide sequence can be synthesized using a CS Bio peptide synthesizer, and finally the N-terminus of the polypeptide is blocked with acetic anhydride reagent acetate. The cleavage agent may be trifluoroacetic acid/ethanedithiol/m-cresol (TFA/EDT/m-cresol), and the crude peptide is dissolved in water and stored by lyophilization. It can be separated and purified by medium pressure liquid chromatography or high pressure liquid chromatography (HPLC). The pure peptide content is >95%. The molecular weight of the peptide sequence is determined by matrix-assisted laser desorption time-of-flight mass spectrometry (MALDI-TOF-MS).
本发明式II化合物可采用如下方法合成:The compound of the formula II of the present invention can be synthesized by the following method:
将式I化合物中X2后面第5位(即X2+5位)的谷氨酸进行硫脂修饰,然后溶解在反应溶液中,则其能形成三聚体结构,此时设计的赖氨酸和硫脂修饰的谷氨酸发生反应,形成N肽之间的酰胺键,即,在硫脂修饰的式I化合物形成的三聚体结构中,一个式I化合物中X5代表的赖氨酸或鸟氨酸与另一个式I化合物中X5后面第5位(即X5+5位)的谷氨酸之间形成酰胺键(-NC(O)-),或者,一个式I化合物中 的X2代表的赖氨酸或鸟氨酸与另一个式I化合物中X2后面第5位(即X2+5位)的谷氨酸之间形成酰胺键(-NC(O)-)。如图1所示,在式II化合物中,三个单链式I分子自聚成三螺旋结构,其中,一个式I分子上的X5(或X2)代表的赖氨酸与另一个式Ⅰ分子中的第X5+5(或X2+5)位的谷氨酸分别位于多肽的g和e’(e’表示与g位在不同的肽分子上)位,在空间方向和空间距离上都较为合适,有利于形成共价键,而其余位置的氨基酸由于空间距离和空间方向的不合适,因此不会参与到共价键的形成,就是说,其余位置的氨基酸由于空间距离和空间方向的不合适而不会影响共价键的形成。The compounds of formula I X 2 rear section 5 (i.e. 2 X +5 bits) glutamic acid sulfatide modified, then dissolved in the reaction solution, it can form a trimeric structure, this time designed lysyl The acid reacts with the sulphur-modified glutamic acid to form an amide bond between the N-peptides, i.e., the lysine represented by X 5 in a compound of formula I in the trimer structure formed by the thioester-modified compound of formula I is formed between an acid or ornithine with a compound of formula I in another back 5 of 5 X (i.e. X 5 bits +5) glutamic acid amide bond (-NC (O) -), or a compound of formula I formation of an amide bond (-NC (O) between the X 2 represents lysine or ornithine with a compound of formula I, X 2 another after the first five (i.e. position X 2 +5) glutamic acid - ). As shown in Figure 1, in the compound of formula II, three single-chained I molecules self-polymerize into a triple helix structure in which one lysine represented by X 5 (or X 2 ) on the molecule of formula I and another formula The glutamic acid at the X 5 +5 (or X 2 +5) position in the I molecule is located at the position of g and e' of the polypeptide (e' indicates a peptide molecule different from the g position), in the spatial direction and space. The distance is more suitable, which is conducive to the formation of covalent bonds, and the amino acids in the remaining positions are not suitable for the formation of covalent bonds due to the inappropriate spatial distance and spatial orientation, that is, the amino acids in the remaining positions are due to the spatial distance and The spatial orientation is not suitable and does not affect the formation of covalent bonds.
在本文所用术语“天然氨基酸”是选自以下的氨基酸(括号内为常用的三字母符号和单字母符号):甘氨酸(Gly,G)、脯氨酸(Pro,P)、丙氨酸(Ala,A)、缬氨酸(Val,V)、亮氨酸(Leu,L)、异亮氨酸(Ile,I)、甲硫氨酸(Met,M)、半胱氨酸(Cys,C)、苯丙氨酸(Phe,F)、酪氨酸(Tyr,Y)、色氨酸(Trp,W)、组氨酸(His,H)、赖氨酸(Lys,K)、精氨酸(Arg,R)、谷氨酰胺(Gln,Q)、天冬酰胺(Asn,N)、谷氨酸(Glu,E)、天冬氨酸(Asp,D)、丝氨酸(Ser,S)和苏氨酸(Thr,T)。如果由于打字错误,与通常使用的符号有所偏差,以通常使用的符号为准。The term "natural amino acid" as used herein is an amino acid selected from the following (a commonly used three-letter symbol and one-letter symbol in parentheses): glycine (Gly, G), proline (Pro, P), alanine (Ala) , A), valine (Val, V), leucine (Leu, L), isoleucine (Ile, I), methionine (Met, M), cysteine (Cys, C ), phenylalanine (Phe, F), tyrosine (Tyr, Y), tryptophan (Trp, W), histidine (His, H), lysine (Lys, K), refined ammonia Acid (Arg, R), glutamine (Gln, Q), asparagine (Asn, N), glutamic acid (Glu, E), aspartic acid (Asp, D), serine (Ser, S) And threonine (Thr, T). If there is a deviation from the commonly used symbol due to a typing error, the commonly used symbol will prevail.
本文中使用的术语“烷基”是指饱和的直链或支链一价烃基,其可以是被取代的(单或多)或未被取代的。优选地,所述烷基是C1-20烷基,更优选C1-15、更优选C1-10烷基、更优选C1-8烷基、更优选C1-6烷基、更优选C1-4烷基。特别优选的烷基包括例如甲基、乙基、正丙基、异丙基、正丁基、仲丁基、异丁基、叔丁基、正戊基、叔戊基、新戊基、正己基、正庚基和正辛基等。合适的取代基包括例如羟基、烷基、卤素、烷氧基、卤代烷基、卤代烷氧基、氨基、氨基烷基或环烷基。The term "alkyl" as used herein refers to a saturated straight or branched chain monovalent hydrocarbon group which may be substituted (single or multiple) or unsubstituted. Preferably, the alkyl group is a C 1-20 alkyl group, more preferably C 1-15 , more preferably a C 1-10 alkyl group, more preferably a C 1-8 alkyl group, more preferably a C 1-6 alkyl group, more A C 1-4 alkyl group is preferred. Particularly preferred alkyl groups include, for example, methyl, ethyl, n-propyl, isopropyl, n-butyl, sec-butyl, isobutyl, tert-butyl, n-pentyl, tert-amyl, neopentyl, hexyl Base, n-heptyl and n-octyl groups, etc. Suitable substituents include, for example, hydroxy, alkyl, halo, alkoxy, haloalkyl, haloalkoxy, amino, aminoalkyl or cycloalkyl.
本发明化合物既可以其本身也可以其衍生物、立体异构体或无生理毒性的盐的形式使用。式I或式II化合物的无生理毒性的盐包括与药学上可接受的无机酸或有机酸、或者与可药用的无机碱或有机碱形 成的盐。合适的酸加成盐的例子包括与盐酸、氢溴酸、硫酸、磷酸、硝酸、高氯酸、富马酸、乙酸、丙酸、琥珀酸、羟基乙酸、甲酸、乳酸、马来酸、酒石酸、柠檬酸、扑酸、丙二酸、羟基马来酸、苯乙酸、谷氨酸、苯甲酸、水杨酸、富马酸、甲苯磺酸、甲磺酸、萘-2-磺酸、苯磺酸、羟基萘甲酸、氢碘酸、苹果酸、鞣酸等形成的盐。合适的碱加成盐的例子包括与钠、锂、钾、镁、铝、钙、锌、N,N'-二苄基乙二胺、氯代普鲁卡因、胆碱、二乙醇胺、乙二胺、N-甲基葡糖胺和普鲁卡因等形成的盐。本文中涉及到本发明化合物时,包括通式I或式II化合物及其衍生物、立体异构体或无生理毒性的盐。The compounds of the invention may be used either as such or in the form of their derivatives, stereoisomers or salts which are not physiologically toxic. The non-physiologically acceptable salt of a compound of Formula I or Formula II includes a pharmaceutically acceptable inorganic or organic acid, or a pharmaceutically acceptable inorganic or organic base Into the salt. Examples of suitable acid addition salts include with hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid, perchloric acid, fumaric acid, acetic acid, propionic acid, succinic acid, glycolic acid, formic acid, lactic acid, maleic acid, tartaric acid. , citric acid, pamoic acid, malonic acid, hydroxymaleic acid, phenylacetic acid, glutamic acid, benzoic acid, salicylic acid, fumaric acid, toluenesulfonic acid, methanesulfonic acid, naphthalene-2-sulfonic acid, benzene a salt formed from a sulfonic acid, a hydroxynaphthoic acid, hydroiodic acid, malic acid, citric acid or the like. Examples of suitable base addition salts include sodium, lithium, potassium, magnesium, aluminum, calcium, zinc, N,N'-dibenzylethylenediamine, chloroprocaine, choline, diethanolamine, B. a salt formed by a diamine, N-methylglucamine, procaine or the like. When a compound of the invention is referred to herein, it includes a compound of formula I or formula II and derivatives thereof, stereoisomers or salts which are not physiologically toxic.
根据本发明,药物组合物包含本发明式I或式II化合物与常规药用载体或赋形剂。本发明的药物组合物可按本领域常规方法制备成各种剂型,包括但不限于片剂、胶囊、溶液、悬浮液、颗粒剂或注射剂等。该药物组合物可通过下面的任意方式施用:口服,喷雾吸入,直肠用药,鼻腔用药,颊部用药,阴道用药,局部用药,非肠道用药如皮下、静脉、肌内、腹膜内、鞘内、心室内、胸骨内和颅内注射或输入,或借助一种外植储器用药。其中优选口服、腹膜内或静脉内用药和局部用药方式。According to the invention, the pharmaceutical composition comprises a compound of formula I or formula II of the invention together with a conventional pharmaceutical carrier or excipient. The pharmaceutical compositions of the present invention can be prepared in a variety of dosage forms, including, but not limited to, tablets, capsules, solutions, suspensions, granules or injections, and the like, by conventional methods in the art. The pharmaceutical composition can be administered by any of the following methods: oral, spray inhalation, rectal administration, nasal administration, buccal administration, vaginal administration, topical administration, parenteral administration such as subcutaneous, intravenous, intramuscular, intraperitoneal, intrathecal. Intraventricular, intrasternal, and intracranial injection or input, or by means of an explant reservoir. Among them, oral administration, intraperitoneal or intravenous administration and topical administration are preferred.
本文中术语“治疗和/或预防有效量”的本发明化合物指以适用于任何医学治疗和/或预防的合理效果的足够量的化合物。但应认识到,本发明化合物和组合物的总日用量须由主诊医师在可靠的医学判断范围内作出决定。对于任何具体的患者,具体的治疗有效剂量水平须根据多种因素而定,所述因素包括所治疗的疾病和该疾病的严重程度;所采用的具体化合物的活性;所采用的具体组合物;患者的年龄、体重、一般健康状况、性别和饮食;所采用的具体化合物的给药时间、给药途径和排泄率;治疗持续时间;与所采用的具体化合物组合使用或同时使用的药物;及医疗领域公知的类似因素。例如,本领域的做法是,化合物的剂量从低于为得到所需治疗效果而要求的水平开始,逐渐增加剂量,直到得到所需的效果。一般说来,本发明式I化合物 用于哺乳动物特别是人的剂量可以介于0.001~1000mg/kg体重/天,例如介于0.01~100mg/kg体重/天,例如介于0.01~10mg/kg体重/天。The term "therapeutically and/or prophylactically effective amount" of a compound of the invention herein refers to a sufficient amount of a compound to be a reasonable effect for any medical treatment and/or prophylaxis. It will be appreciated, however, that the total daily usage of the compounds and compositions of the present invention will be decided by the attending physician within the scope of sound medical judgment. The particular therapeutically effective dosage level for any particular patient will depend on a number of factors, including the condition being treated and the severity of the disease; the activity of the particular compound employed; the particular composition employed; The age, weight, general health, sex and diet of the patient; the time of administration, the route of administration and the rate of excretion of the particular compound employed; the duration of treatment; the drug used in combination or concurrent with the particular compound employed; Similar factors are known in the medical field. For example, it is the practice in the art that the dosage of the compound be started from a level lower than that required to achieve the desired therapeutic effect, and the dosage is gradually increased until the desired effect is obtained. In general, the compounds of formula I of the invention The dosage for mammals, particularly humans, may range from 0.001 to 1000 mg/kg body weight per day, such as from 0.01 to 100 mg/kg body weight per day, such as from 0.01 to 10 mg per kg body weight per day.
本发明设计出新的共价键形成方法(在适当的位点,进行化学修饰,利用内酰胺键),得到了定点共价交联的三聚体辅助序列,之后将其与部分天然N肽缀合,使得缀合后的N肽能够和病毒的CHR作用,得到共价交联的新缀合的N肽抑制剂,通过共价交联显著提高了N肽的抑制活性。本发明的N肽抑制剂具有与目前使用药物不同的作用机制、作用方式和作用靶标,对找寻新型HIV-1融合抑制剂药物具有重要意义。The present invention devises a novel covalent bond formation method (chemical modification at a suitable site, using a lactam bond) to obtain a site-covalent cross-linked trimer-assisted sequence, which is then combined with a portion of the native N-peptide. Conjugation allows the conjugated N-peptide to interact with the CHR of the virus, resulting in a covalently cross-linked, newly conjugated N-peptide inhibitor that significantly enhances the inhibitory activity of the N-peptide by covalent cross-linking. The N-peptide inhibitor of the present invention has a different mechanism of action, mode of action and target of action than the currently used drugs, and is of great significance for finding a novel HIV-1 fusion inhibitor drug.
图1三条式I化合物形成的三聚体螺旋结构(式Ⅱ化合物)的横截面示意图,其中g代表赖氨酸,e代表谷氨酸,各单肽之间形成酰胺键。Figure 1 is a schematic cross-sectional view of a trimeric helical structure (compound of formula II) formed by three compounds of formula I, wherein g represents lysine and e represents glutamic acid, and an amide bond is formed between each single peptide.
图2实施例8样品配制图。Figure 2 is a sample preparation diagram of Example 8.
下面将结合实施例对本发明的实施方案进行详细描述,但是本领域技术人员将会理解,下列实施例仅用于说明本发明,而不应视为限定本发明的范围。实施例中未注明具体条件者,按照常规条件或制造商建议的条件进行。所用试剂或仪器未注明生产厂商者,均为可以通过市购获得的常规产品。The embodiments of the present invention will be described in detail below with reference to the accompanying drawings, however, the following examples are intended to illustrate the invention and are not intended to limit the scope of the invention. Those who do not specify the specific conditions in the examples are carried out according to the conventional conditions or the conditions recommended by the manufacturer. The reagents or instruments used are not indicated by the manufacturer, and are conventional products that can be obtained commercially.
在本发明中使用的缩写具有下面的含义:The abbreviations used in the present invention have the following meanings:
AIDS(Acquired Immune Deficiency Syndrome)艾滋病,获得性免疫缺陷综合征AIDS (Acquired Immune Deficiency Syndrome) AIDS, Acquired Immune Deficiency Syndrome
DCM(Dichloromethane)二氯甲烷DCM (Dichloromethane) dichloromethane
DMF(N,N-Dimethyl malonate)二甲基甲酰胺DMF (N, N-Dimethyl malonate) dimethylformamide
Env(Envelope glycoprotein)包膜糖蛋白Env (Envelope glycoprotein) envelope glycoprotein
Fmoc(Fluorenylmethoxycarbonyl)芴甲氧羰基Fmoc(Fluorenylmethoxycarbonyl)芴methoxycarbonyl
HBTU 2-(1H-1-羟基苯并三唑)-1,1,3,3-四甲基脲六氟磷酸HBTU 2-(1H-1-hydroxybenzotriazole)-1,1,3,3-tetramethylurea hexafluorophosphate
HOBt(1-Hydroxylbenzotriazole anhydrous)1-羟基苯并三氮唑 HOBt(1-Hydroxylbenzotriazole anhydrous) 1-hydroxybenzotriazole
6-HB(six-helix bundle)六螺旋体6-HB (six-helix bundle)
HR1(N-terminal heptad repeat,NHR)N末端重复序列HR1 (N-terminal heptad repeat, NHR) N-terminal repeat
HR2(C-terminal heptad repeat,CHR)C末端重复序列HR2 (C-terminal heptad repeat, CHR) C-terminal repeat
HIV(Human Immunodeficiency Virus))人免疫缺陷病毒HIV (Human Immunodeficiency Virus)) human immunodeficiency virus
HIV-1 人免疫缺陷病毒Ⅰ型HIV-1 human immunodeficiency virus type I
HPLC(High performance liquid chromatography)高效液相色谱HPLC (High performance liquid chromatography) high performance liquid chromatography
OAll 烯丙基OAll allyl
TFA(trifluoroacetic acid)三氟乙酸TFA (trifluoroacetic acid) trifluoroacetic acid
DIEAN,N-二异丙基乙胺DIEAN, N-diisopropylethylamine
EDC盐酸盐1-(3-二甲氨基丙基)-3-乙基碳二亚胺盐酸盐EDC hydrochloride 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride
PBS(Phosphate Buffered Saline)磷酸盐缓冲液(pH=7.2)PBS (Phosphate Buffered Saline) phosphate buffer (pH=7.2)
MALDI-TOF-MS 基质辅助激光解析飞行时间质谱MALDI-TOF-MS matrix-assisted laser desorption time-of-flight mass spectrometry
本发明实施例所用固相合成载体Rink酰胺树脂为天津南开合成责任有限公司产品;HBTU、HOBt、DIEA、EDC盐酸盐以及Fmoc保护的天然氨基酸为上海吉尔生化公司以及成都诚诺新技术有限责任公司产品。三氟乙酸(TFA)为北京博迈杰科技有限公司产品;DMF、DCM为北京博迈杰科技有限公司产品;色谱纯乙腈为Fisher公司产品。其它试剂如无说明均为国产分析纯产品。The solid phase synthesis carrier Rink amide resin used in the examples of the present invention is Tianjin Nankai Synthetic Co., Ltd.; HBTU, HOBt, DIEA, EDC hydrochloride and Fmoc protected natural amino acid are Shanghai Jill Biochemical Co., Ltd. and Chengdu Chengnuo New Technology Co., Ltd. company's product. Trifluoroacetic acid (TFA) is a product of Beijing Bomaijie Technology Co., Ltd.; DMF and DCM are products of Beijing Bomaijie Technology Co., Ltd.; chromatographic pure acetonitrile is Fisher's product. Other reagents are domestically produced pure products if they are not described.
本发明实施例中所用单位“M”是指mol/L。The unit "M" used in the examples of the present invention means mol/L.
实施例1:SEQ ID NO:5所示单体多肽的制备Example 1: Preparation of monomeric polypeptide represented by SEQ ID NO: 5
多肽合成采用标准的Fmoc固相方法。选用Rink Amide树脂,肽链由C端向N端延长。缩合剂为HBTU/HOBt/DIEA。脱保护剂为哌啶/DMF溶液。利用CS Bio多肽合成仪合成肽序列,最后多肽的N端用乙酸酐试剂乙酸化封端。裂解剂为三氟乙酸/乙二硫醇/间甲酚(TFA/EDT/m-cresol),粗肽用水溶解后冻干保存。用中压液相色谱法或高压液相色谱法(HPLC)进行分离纯化,纯肽含量>95%,并且用基质辅助激光解析飞行时间质谱(MALDI-TOF-MS)确定肽序列分子量。Peptide synthesis uses the standard Fmoc solid phase method. Rink Amide resin was selected and the peptide chain was extended from the C-terminus to the N-terminus. The condensing agent is HBTU/HOBt/DIEA. The deprotecting agent is a piperidine/DMF solution. The peptide sequence was synthesized using a CS Bio peptide synthesizer, and finally the N-terminus of the polypeptide was blocked with acetic anhydride reagent acetate. The cleavage agent is trifluoroacetic acid/ethylenedithiol/m-cresol (TFA/EDT/m-cresol), and the crude peptide is dissolved in water and stored by lyophilization. Separation and purification were carried out by medium pressure liquid chromatography or high pressure liquid chromatography (HPLC) with a pure peptide content of >95%, and the molecular weight of the peptide sequence was determined by matrix-assisted laser desorption time-of-flight mass spectrometry (MALDI-TOF-MS).
合成条件如下: The synthesis conditions are as follows:
保护氨基酸:0.25M氨基酸的DMF溶液,Protected amino acid: 0.25M amino acid in DMF solution,
活化剂:0.2M HBTU/0.2M HOBt的DMF溶液,Activator: 0.2M HBTU/0.2M HOBt in DMF solution,
活化碱:0.4M DIEA的DMF溶液,Activated base: 0.4M DIEA in DMF solution,
脱保护剂:20v/v%哌啶的DMF溶液,Deprotecting agent: 20v/v% piperidine in DMF solution,
封闭试剂:20v/v%乙酸酐的DMF溶液。Blocking reagent: 20 v/v% acetic anhydride in DMF solution.
称取Rink Amide树脂0.53g(0.23mmol)置入CS Bio自动多肽合成仪反应器中,然后将保护氨基酸,活化剂,活化碱,脱保护试剂,封闭试剂按上述浓度配置好后,用CS Bio自动多肽合成仪进行合成。完成后肽树脂用DMF洗涤3遍后用无水甲醇收缩,室温真空干燥,得肽树脂约2.02g。0.53g (0.23mmol) of Rink Amide resin was weighed into the CS Bio automatic peptide synthesizer reactor, and then the protected amino acid, activator, activated base, deprotecting reagent, and blocking reagent were configured at the above concentrations, and then CS Bio was used. Automated peptide synthesizer for synthesis. After completion, the peptide resin was washed 3 times with DMF, then shrunk with anhydrous methanol, and dried under vacuum at room temperature to obtain about 2.02 g of a peptide resin.
裂解液(体积百分比):三氟乙酸︰乙二硫醇︰间甲酚︰水=87.5︰5︰5︰2.5。Lysate (% by volume): trifluoroacetic acid: ethanedithiol: m-cresol: water = 87.5..5..5..2.5.
肽树脂的裂解:称取CS Bio自动多肽合成仪合成好的肽树脂2.02g,放入500ml茄形瓶中,冰浴,电磁搅拌。按1克肽树脂加入10ml的量配制裂解液。TFA需预先冰浴降温30min或者预先存放于冰箱中使用;将配制好的裂解液加入到冰浴条件下的肽树脂中,电磁搅拌,树脂变橙红色,在冰浴条件下反应30min,然后,撤去冰浴,室温再继续搅拌反应200min,反应完成。剧烈搅拌下向反应器中加入冷乙醚500ml,析出白色沉淀,继续搅拌60min;用G3的砂芯抽虑漏斗滤出析出物,用冷乙醚反复洗涤3遍,晾干。加入10%(v/v)乙酸水溶液150ml,乙腈5ml使固体充分溶解,抽虑,滤液冻干粗肽927mg。Pyrolysis of peptide resin: 2.02 g of a peptide resin synthesized by CS Bio automatic peptide synthesizer was weighed, placed in a 500 ml eggplant-shaped flask, ice-cooled, and electromagnetically stirred. The lysate was prepared by adding 1 gram of the peptide resin to 10 ml. The TFA needs to be cooled in the ice bath for 30 minutes in advance or stored in the refrigerator in advance; the prepared lysate is added to the peptide resin under ice bath conditions, electromagnetically stirred, the resin turns orange-red, and reacted in an ice bath for 30 minutes, then The ice bath was removed, and the reaction was further stirred at room temperature for 200 min, and the reaction was completed. 500 ml of cold diethyl ether was added to the reactor under vigorous stirring, and a white precipitate was precipitated, and stirring was continued for 60 min; the precipitate was filtered off with a G3 sand core, and washed repeatedly with cold ether for 3 times and dried. 150 ml of a 10% (v/v) aqueous acetic acid solution and 5 ml of acetonitrile were added to sufficiently dissolve the solid, and the filtrate was lyophilized to 927 mg of a crude peptide.
所得的粗肽用中压或高压色谱进行纯化。色谱柱为C8柱,洗脱剂为乙腈、水及少量乙酸。具体操作步骤:称取粗肽867mg,加水20ml,乙腈5ml使固体完全溶解,经0.25μm孔径的滤膜过滤后上样。色谱柱预先用含有0.1v/v%乙酸的乙腈溶液与水的混合溶液(其中乙腈溶液与水的体积百分比分别为15%和85%)200ml平衡。上样后继续用含有0.1v/v%乙酸的乙腈溶液与水的混合溶液(其中乙腈溶液与水的体积百分比分别为15%和85%)200ml冲洗,高效液相色谱检测洗脱液成分。根据液相检测结果逐渐升高乙腈含量,直至所纯化的多肽主 峰被洗脱出来。合并洗脱液,旋转蒸发去除大部分溶剂,冻干得纯的N肽,HPLC检测含量大于80%。The resulting crude peptide was purified by medium pressure or high pressure chromatography. The column was a C8 column and the eluent was acetonitrile, water and a small amount of acetic acid. Specific procedure: Weigh 867mg of crude peptide, add 20ml of water, 5ml of acetonitrile to completely dissolve the solid, filter through 0.25μm pore size filter and load. The column was previously equilibrated with 200 ml of a mixed solution of acetonitrile solution and water containing 0.1 v/v% acetic acid (wherein the volume percentage of acetonitrile solution and water were 15% and 85%, respectively). After the application, the mixture was washed with 200 ml of a mixed solution of acetonitrile solution and water containing 0.1 v/v% acetic acid (15% and 85% by volume of acetonitrile solution and water, respectively), and the fraction of the eluate was detected by high performance liquid chromatography. According to the liquid phase test results, the acetonitrile content is gradually increased until the purified polypeptide is The peak is eluted. The eluates were combined, and most of the solvent was removed by rotary evaporation, and the pure N peptide was freeze-dried, and the content of HPLC detection was more than 80%.
反相制备液相二次纯化N肽,具体方法如下:将中压纯化后的N肽,用2ml乙腈和8ml纯水溶解,经0.25μm孔径的滤膜过滤后上样,然后进行梯度洗脱。洗脱液的A相为0.1v/v%三氟乙酸水溶液;B相为0.1v/v%三氟乙酸的乙腈溶液与水的混合溶液(其中乙腈溶液与水的体积百分比分别为70%和30%)。反相制备液相先用20v/v%B相和80v/v%A相的混合溶液平衡5min,上样后,根据需要调整洗脱梯度,逐渐升高B相的含量,直至所纯化的多肽主峰被洗脱出来。将HPLC检测含量大于95%的洗脱液合并,旋转蒸发去除大部分溶剂,冻干得纯的N肽。The N-peptide is purified by reverse phase preparative liquid phase. The specific method is as follows: the intermediate-purified N-peptide is dissolved in 2 ml of acetonitrile and 8 ml of pure water, filtered through a 0.25 μm pore size filter, and then subjected to gradient elution. . The phase A of the eluent is 0.1v/v% aqueous solution of trifluoroacetic acid; the phase B is a mixed solution of 0.1v/v% trifluoroacetic acid in acetonitrile solution and water (wherein the volume percentage of acetonitrile solution and water is 70% and 30%). The reverse phase preparation liquid phase was first equilibrated with a mixed solution of 20 v/v% B phase and 80 v/v% A phase for 5 min. After loading, the elution gradient was adjusted as needed, and the content of phase B was gradually increased until the purified polypeptide was obtained. The main peak is eluted. The eluates detected by HPLC were greater than 95%, and most of the solvent was removed by rotary evaporation, and the pure N peptide was lyophilized.
实施例2:其他单体多肽的制备Example 2: Preparation of other monomeric polypeptides
其他未交联的单体N肽(SEQ ID NO:1~SEQ ID NO:4,以及SEQ ID NO:6~SEQ ID NO:11所示的单体多肽)的制备方法同实施例1中SEQ ID NO:5所示单体多肽的制备方法相同。Other uncrosslinked monomeric N peptides (SEQ ID NO: 1 to SEQ ID NO: 4, and monomeric polypeptides represented by SEQ ID NO: 6 to SEQ ID NO: 11) are prepared in the same manner as in Example 1 The preparation method of the monomeric polypeptide represented by ID NO: 5 is the same.
实施例3:(SEQ ID NO:1)3所示共价交联多肽的制备Example 3: Preparation of a covalently crosslinked polypeptide represented by (SEQ ID NO: 1) 3
单体多肽序列的合成同实施例1中SEQ ID NO:5所示单体多肽,但是在树脂接氨基酸时,将要需位点修饰的E换成E(OAll)。序列在树脂上合成完毕后,不裂解,做以下进一步化学修饰。The monomer polypeptide sequence was synthesized as in the monomeric polypeptide of SEQ ID NO: 5 in Example 1, but when the resin was attached to the amino acid, the site-requiring E was replaced by E(OAll). After the sequence was synthesized on the resin, it was not cleaved and the following further chemical modification was performed.
在树脂上,脱出多肽序列中E(OAll)的侧链保护基OAll(O-烯丙基)。On the resin, the side chain protecting group OAll (O-allyl) of E(OAll) in the polypeptide sequence is removed.
在合成完毕的多肽树脂,转移入50ml茄形瓶,并称量0.26g四(三苯基膦)钯(Pd(PPh3)4),0.31g5,5-二甲基环己二酮溶于8ml无水四氢呋喃和二氯甲烷混合溶剂(v/v=1/1)中,加入到茄形瓶内,避光反应6小时。在多肽反应器内,采用DCM洗涤3次,再用DMF洗涤3次,之后用50ml 0.5v/v%DIEA的DMF溶液洗涤5次,50ml 0.5%(质量/体积)铜试剂的DMF溶液洗涤5次,最后用分别用DMF、DCM、MeOH洗涤,每种溶液洗涤2次,抽干。The synthesized peptide resin was transferred into a 50 ml eggplant-shaped flask, and 0.26 g of tetrakis(triphenylphosphine)palladium (Pd(PPh 3 ) 4 ) was weighed, and 0.31 g of 5,5-dimethylcyclohexanedione was dissolved. 8 ml of a mixture solvent of anhydrous tetrahydrofuran and dichloromethane (v/v = 1/1) was placed in an eggplant-shaped flask and allowed to react in the dark for 6 hours. In the peptide reactor, wash 3 times with DCM, then 3 times with DMF, then 5 times with 50 ml of 0.5 v / v% DIEA in DMF solution, 50 ml of 0.5% (mass / volume) copper reagent DMF solution wash 5 After that, it was washed with DMF, DCM, and MeOH, respectively, and each solution was washed twice and drained.
在树脂上,脱出侧链保护基后的多肽侧链硫酯化。 On the resin, the side chain of the polypeptide after the side chain protecting group is removed is thiolated.
在多肽反应器内,加入脱出侧链保护基后的多肽树脂,并将275μl苄硫醇、315mgHOBt、450mgEDC盐酸盐溶于5mlDMF和5mlDCM的混合溶剂中,然后加入到反应器内,反应6小时后,将反应溶剂抽干,再次将275μl苄硫醇、315mgHOBt、450mgEDC盐酸盐溶于5mlDMF和5mlDCM的混合溶剂中,加入到反应器中,反应12小时后,最后分别用DMF、DCM、MeOH洗涤,每种溶液洗涤2次,抽干。In the polypeptide reactor, the polypeptide resin after removing the side chain protecting group was added, and 275 μl of benzyl mercaptan, 315 mg of HOBt, and 450 mg of EDC hydrochloride were dissolved in a mixed solvent of 5 ml of DMF and 5 ml of DCM, and then added to the reactor for 6 hours. After that, the reaction solvent was drained, and 275 μl of benzyl mercaptan, 315 mg of HOBt, and 450 mg of EDC hydrochloride were again dissolved in a mixed solvent of 5 ml of DMF and 5 ml of DCM, and added to the reactor. After 12 hours of reaction, finally, DMF, DCM, and MeOH were respectively used. Wash, wash each solution twice and drain.
之后按照实施例1中SEQ ID NO:5所示单体多肽的裂解方法、纯化方法,得到纯肽,HPLC检测纯度大于90%。Then, according to the cleavage method and purification method of the monomeric polypeptide shown by SEQ ID NO: 5 in Example 1, a pure peptide was obtained, and the purity was more than 90% by HPLC.
纯化后的硫酯修饰的N肽溶解在反应溶剂中(30%PBS/70%H2O),浓度约在1mg/ml,在37度温度下反应40小时,HPLC检测反应至完全,之后再反向制备高效液相的纯化条件下,纯化得到目标N肽,纯度大于95%。The purified thioester-modified N-peptide is dissolved in a reaction solvent (30% PBS/70% H 2 O) at a concentration of about 1 mg/ml, and reacted at 37 ° C for 40 hours. The reaction is detected by HPLC to complete, and then The target N peptide was purified under reverse purification conditions for preparative high-performance liquid phase, and the purity was greater than 95%.
实施实例4:其他共价交联N肽的制备Example 4: Preparation of other covalently crosslinked N-peptides
其他共价交联N肽(如(SEQ ID NO:2)3~(SEQ ID NO:11)3所示的共价交联多肽)的制备方法与实施例3中(SEQ ID NO:1)3所示交联多肽相同。Preparation of other covalently cross-linked N-peptides (e.g., covalently cross-linked polypeptides represented by (SEQ ID NO: 2) 3 to (SEQ ID NO: 11) 3 ) and in Example 3 (SEQ ID NO: 1) The crosslinked polypeptides shown in 3 are identical.
上述各单体多肽和共价交联多肽的分子量见表1。The molecular weights of the above respective monomeric polypeptides and covalently crosslinked polypeptides are shown in Table 1.
表1多肽的分子量Table 1 molecular weight of the polypeptide
实施实例5:N肽的α螺旋度的表征Example 5: Characterization of alpha helicity of N-peptide
1.N肽溶液的配置1.N peptide solution configuration
称取约1mg纯肽,溶解在700μlddH2O中,震荡,离心,取上清液后在nanodrop2000仪器上标定N肽溶液的浓度。以缓冲液PBS(pH=7.4)为稀释剂,配置N肽溶液10μM,500μl。About 1 mg of the pure peptide was weighed, dissolved in 700 μld of H 2 O, shaken, centrifuged, and the supernatant was taken, and the concentration of the N-peptide solution was calibrated on a nanodrop 2000 apparatus. The buffer solution PBS (pH = 7.4) was used as a diluent, and an N peptide solution of 10 μM and 500 μl was placed.
2.测定N肽溶液的螺旋度2. Determination of the helicity of the N-peptide solution
将配制好的N肽溶液加入到比色皿内,在圆二色光谱仪器中测定其螺旋吸收值(已扣除空白对照吸收值),并按照以下公式,换算成螺旋度:The prepared N-peptide solution is added to the cuvette, and the helical absorption value (without the blank control absorption value) is measured in a circular dichroism spectroscopy instrument, and converted into helicity according to the following formula:
其中浓度(c)指N肽溶液的浓度值,路径(L)指参比池长度,残基数(N)指测量N肽的酰胺键数。Wherein the concentration (c) refers to the concentration value of the N-peptide solution, the path (L) refers to the reference cell length, and the number of residues (N) refers to the number of amide bonds of the N-peptide.
各N肽的螺旋度值见表2。The helicity values of the respective N peptides are shown in Table 2.
实施例8:化合物抑制HIV-1介导的细胞-细胞融合活性评价(IC50)Example 8: Compound inhibition of HIV-1-mediated cell - cell fusion activity evaluation (IC 50)
细胞-细胞融合实验:Cell-cell fusion assay:
1.TZM-bl细胞和HL2/3细胞的复苏/冻存1. Resuscitation/freezing of TZM-bl cells and HL2/3 cells
将细胞冻存管从液氮中取出,37℃水浴迅速升温,取出细胞冻存液(1ml),加至15ml离心管,并加入1ml培养基(购自上海立菲生物技术公司),离心(800rpm,10min),除去培养基,重新加入1ml新鲜培养基,并轻吹使细胞均匀悬浮,将细胞悬浮液全部转移至含有15ml培养基的75cm2培养瓶中,在37℃、5%CO2下培养。The cell cryotube was taken out from the liquid nitrogen, and the temperature was rapidly raised in a 37 ° C water bath. The cell cryopreservation solution (1 ml) was taken out, added to a 15 ml centrifuge tube, and 1 ml of the medium (purchased from Shanghai Lifei Biotechnology Co., Ltd.) was added and centrifuged ( 800 rpm, 10 min), the medium was removed, 1 ml of fresh medium was added again, and the cells were uniformly suspended by light blowing, and the cell suspension was completely transferred to a 75 cm 2 culture flask containing 15 ml of medium at 37 ° C, 5% CO 2 . Under cultivation.
消化细胞并计数后,离心,弃上清,加冻存液轻吹使细胞均匀悬浮(100万/ml),分装至冻存管(1ml/管),分别置于4℃(30min)、-20℃(2小时)、-80℃(12小时)、-196℃保存。After digesting the cells and counting, centrifuge, discard the supernatant, add the frozen solution and gently blow the cells to suspend the cells evenly (1 million/ml), and dispense them into a cryotube (1 ml/tube), and place them at 4 ° C (30 min). Store at -20 ° C (2 hours), -80 ° C (12 hours), and -196 ° C.
2.传代培养2. Subculture
取出细胞培养瓶,倒去培养基,加入2ml消化液(购自gibico公司),轻晃使其在细胞表面平铺均匀,倒去消化液,重新加入2ml消化液,铺 匀,37℃消化2min,加入4ml培养基终止消化,取出所有液体,离心,弃上清,加4ml培养基并轻吹使细胞均匀悬浮,取10μl计数,取40-50万细胞置于75cm2培养瓶中传代培养。Remove the cell culture flask, pour off the medium, add 2 ml of digestive juice (purchased from gibico), gently spread it on the cell surface, pour the digestive juice, re-add 2 ml of the digestive juice, spread, and digest at 37 ° C for 2 min. The digestion was terminated by adding 4 ml of the medium, all the liquid was taken out, centrifuged, the supernatant was discarded, 4 ml of the medium was added, and the cells were uniformly suspended by light blowing, and 10 μl of the cells were counted, and 40-500,000 cells were placed in a 75 cm 2 culture flask for subculture.
3.融合实验3. Fusion experiment
A.取TZM-bl细胞(由美国NIH AIDS Research and Reference Reagent Program提供)悬浮液稀释至50万/ml,铺入96孔细胞培养板,50μl/孔,培养24小时。A. The TZM-bl cells (supplied by the NIH AIDS Research and Reference Reagent Program) were diluted to 500,000/ml, and placed in a 96-well cell culture plate at 50 μl/well for 24 hours.
B.配样品:取待测化合物,先估计化合物的IC50值,以这个估计的值为基础,乘以两个4,再乘以6得到待测化合物的配制浓度,例如:估计样品的IC50为10nM,则样品的配制浓度为10*4*4*6=960nM,以此浓度为基础,在96孔板上第(1-10)列依次将待测化合物稀释四倍,11列和12列为空白溶剂(空白溶剂即只含培养基,不含待测样品,其中11列为阳性对照,为无样品抑制剂条件下以1:3浓度混合的TZM-bl细胞和HL2/3细胞;12列为阴性对照,为单一TZM-bl细胞的化学发光信号);DMSO含量≤6%。B. Matching the sample: Take the compound to be tested, first estimate the IC 50 value of the compound, based on this estimated value, multiply by two 4, and multiply by 6 to obtain the formulated concentration of the test compound, for example: IC of estimated sample 50 is 10nM, the sample is prepared at a concentration of 10*4*4*6=960nM. Based on the concentration, the test compound is diluted four times in the (1-10) column of the 96-well plate, 11 columns and 12 columns are blank solvents (blank solvent contains only medium, no sample to be tested, 11 of which are positive controls, TZM-bl cells and HL2/3 cells mixed at a concentration of 1:3 without sample inhibitors) ; 12 is a negative control, is the chemiluminescence signal of a single TZM-bl cell); DMSO content ≤ 6%.
样品配制说明(见附图2):每个96孔样品板(每行12孔,共8行;Costar 3799,Corning Incorporation,USA)配制4个样品,每个样品重复1次,如图2所示,以第一行为例将选定浓度的样品放置第S1孔,序列稀释4倍(即后一个孔的样品浓度是前一个孔的1/4),按此稀释10个浓度梯度。最后两个孔作为对照只含有培养基,其中第11孔含有靶细胞和效应细胞为100%融合对照(阳性对照),第12孔只含靶细胞为无融合背景对照(阴性对照)。Sample preparation instructions (see Figure 2): Four samples were prepared for each 96-well sample plate (12 holes per row, 8 rows; Costar 3799, Corning Incorporation, USA), and each sample was repeated once, as shown in Figure 2. In the first behavior example, the sample of the selected concentration was placed in the S1 well, and the sequence was diluted 4 times (ie, the sample concentration of the latter well was 1/4 of the previous well), and 10 concentration gradients were diluted accordingly. The last two wells contained control medium only as the control, in which the 11th well contained the target cells and the effector cells were 100% fusion control (positive control), and the 12th well contained only the target cells as the unfused background control (negative control).
C.取HL2/3细胞(由美国NIH AIDS Research and Reference Reagent Program提供)悬浮液稀释至100万/ml,加入细胞板的(1-11)×(A-H),50μl/孔,第12×(A-H)补加50μl/孔培养基。C. Take HL2/3 cells (supplied by NIH AIDS Research and Reference Reagent Program) and dilute to 1 million/ml, add (1-11)×(AH), 50 μl/well, 12×( AH) supplemented with 50 μl/well of medium.
D.立即取步骤B中的20μl/孔样品加入细胞板,培养6小时。D. Immediately take the 20 μl/well sample from step B and add to the cell plate for 6 hours.
E.去除细胞板中每孔中的培养基(120μl/孔),以PBS洗2次,150μl/次。E. The medium (120 μl/well) in each well of the cell plate was removed and washed twice with PBS, 150 μl/time.
加入稀释后的裂解液(1×),50μl/孔,裂解5min;其中稀释后的裂 解液(1×)即将Luciferase试剂盒(Promega,USA)中(5×)的裂解液用水稀释,根据用量新鲜配制。Add the diluted lysate (1×), 50 μl/well, and lyse for 5 min; Solution (1×) The lysate (5×) in the Luciferase Kit (Promega, USA) was diluted with water and freshly prepared according to the amount.
F.取20μl/孔细胞裂解液铺在96孔磷光板上。F. Take 20 μl/well of cell lysate onto a 96-well phosphor plate.
G.将融化后的LA缓冲液(Luciferase Assay Buffer,Promega Cooperation,USA)加入LA底物(Luciferase Assay Substrate,Promega Cooperation,USA)中混匀,加40μl/孔于96孔磷光板中。G. The melted LA buffer (Luciferase Assay Buffer, Promega Cooperation, USA) was added to the LA substrate (Luciferase Assay Substrate, Promega Cooperation, USA) and mixed, and 40 μl/well was added to the 96-well phosphor plate.
H.立即在酶标仪上检测发光。实验的阴性对照为单一TZM-bl细胞的化学发光信号,用Min表示;阳性对照为无样品抑制剂条件下以1:3浓度混合的TZM-bl细胞和HL2/3细胞,用Max表示;测定值为某一样品在某一浓度下的信号值,用X示;细胞融合率=(X-Min)/(Max-Min)*100%。H. Immediately detect luminescence on a microplate reader. The negative control of the experiment is the chemiluminescence signal of single TZM-bl cells, which is represented by Min; the positive control is TZM-bl cells and HL2/3 cells mixed at a concentration of 1:3 without sample inhibitor, expressed by Max; The value is the signal value of a certain sample at a certain concentration, indicated by X; the cell fusion rate = (X-Min) / (Max-Min) * 100%.
按照上述方法,活性测定结果见下面的表2。表2中的数据表明,共价交联后的N肽活性得到了明显的提高,最好的活性达到了低纳摩尔水平。According to the above method, the activity measurement results are shown in Table 2 below. The data in Table 2 shows that the activity of the N-peptide after covalent cross-linking is significantly improved, and the best activity reaches a low nanomolar level.
表2Table 2
注:1.a)Uni:deg*m2dmol-1,在222nm的吸收值并归一化处理,100%α螺旋度的数 值为-33000;b)表中的数据表明,交联后的N肽活性得到了明显的提高,最好的活性达到了低纳摩尔水平。Note: 1.a) Uni: deg*m 2 dmol -1 , the absorption at 222 nm and normalized, the value of 100% alpha helicity is -33000; b) the data in the table indicates that after cross-linking The activity of the N peptide was significantly improved, and the best activity reached a low nanomolar level.
2.T20,C34是C肽融合抑制剂,作为细胞融合活性实验对照。其中,T20是已上市药物,C34是实验室中活性较好且稳定的融合抑制剂。2. T20, C34 is a C-peptide fusion inhibitor as an experimental control for cell fusion activity. Among them, T20 is a marketed drug, and C34 is a well-stabilized and stable fusion inhibitor in the laboratory.
尽管本发明的具体实施方式已经得到详细的描述,本领域技术人员将会理解。根据已经公开的所有教导,可以对那些细节进行各种修改和替换,这些改变均在本发明的保护范围之内。本发明的全部范围由所附权利要求及其任何等同物给出。 Although specific embodiments of the invention have been described in detail, those skilled in the art will understand. Various modifications and alterations of the details are possible in light of the teachings of the invention. The full scope of the invention is given by the appended claims and any equivalents thereof.
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| WO2017000789A1 true WO2017000789A1 (en) | 2017-01-05 |
Family
ID=57607794
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/CN2016/085968 Ceased WO2017000789A1 (en) | 2015-07-02 | 2016-06-16 | Covalently crosslinked n-peptide inhibitor |
Country Status (2)
| Country | Link |
|---|---|
| CN (1) | CN106317209B (en) |
| WO (1) | WO2017000789A1 (en) |
Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN102307588A (en) * | 2009-02-09 | 2012-01-04 | 纽约血库公司 | Trimerich hiv fusion inhibitors for treating or preventing hiv infection |
| CN103122024A (en) * | 2011-11-21 | 2013-05-29 | 中国人民解放军军事医学科学院毒物药物研究所 | Artificially designed HIV (human immunodeficiency virus)-infection-resisting polypeptide, composition and application |
| CN104203276A (en) * | 2012-03-20 | 2014-12-10 | 默沙东公司 | Stable peptide mimetics of the HIV-1 GP41 pre-hairpin intermediate |
| CN104277113A (en) * | 2013-07-08 | 2015-01-14 | 中国人民解放军军事医学科学院毒物药物研究所 | Bivalent polypeptide for inhibiting HIV infection |
Family Cites Families (1)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20060281673A1 (en) * | 2003-02-11 | 2006-12-14 | Marius Clore | Novel peptide inhibitor of hiv fusion that disrupts the internal trimeric coiled-coil of gp41 |
-
2015
- 2015-07-02 CN CN201510381255.1A patent/CN106317209B/en not_active Expired - Fee Related
-
2016
- 2016-06-16 WO PCT/CN2016/085968 patent/WO2017000789A1/en not_active Ceased
Patent Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN102307588A (en) * | 2009-02-09 | 2012-01-04 | 纽约血库公司 | Trimerich hiv fusion inhibitors for treating or preventing hiv infection |
| CN103122024A (en) * | 2011-11-21 | 2013-05-29 | 中国人民解放军军事医学科学院毒物药物研究所 | Artificially designed HIV (human immunodeficiency virus)-infection-resisting polypeptide, composition and application |
| CN104203276A (en) * | 2012-03-20 | 2014-12-10 | 默沙东公司 | Stable peptide mimetics of the HIV-1 GP41 pre-hairpin intermediate |
| CN104277113A (en) * | 2013-07-08 | 2015-01-14 | 中国人民解放军军事医学科学院毒物药物研究所 | Bivalent polypeptide for inhibiting HIV infection |
Also Published As
| Publication number | Publication date |
|---|---|
| CN106317209A (en) | 2017-01-11 |
| CN106317209B (en) | 2020-03-13 |
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