WO2012048607A1 - Method for detecting pca3 and psa genes, and diagnostic kit thereof - Google Patents
Method for detecting pca3 and psa genes, and diagnostic kit thereof Download PDFInfo
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- WO2012048607A1 WO2012048607A1 PCT/CN2011/079361 CN2011079361W WO2012048607A1 WO 2012048607 A1 WO2012048607 A1 WO 2012048607A1 CN 2011079361 W CN2011079361 W CN 2011079361W WO 2012048607 A1 WO2012048607 A1 WO 2012048607A1
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- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
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- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
- C12Q1/6837—Enzymatic or biochemical coupling of nucleic acids to a solid phase using probe arrays or probe chips
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
Definitions
- the invention relates to the technical field of in vitro diagnostic detection, in particular to a liquid phase chip detection method for a specific gene PCA3, PSA related to prostate diseases and a diagnostic kit thereof.
- PCA3 prostate cancer antigen 3 gene, also known as DD3 ( Differential display code 3 )
- the gene a gene found to be non-coding RNA discovered by Bussemakers et al in 1999, consists of four exons and three introns.
- the PCA3 gene is expressed only in prostate tissue, and its expression is extremely low or not expressed in normal prostate and benign prostatic hyperplasia (BPH) tissues, but is highly expressed in prostate cancer (PCa) cells. Therefore, the PCA3 gene is currently considered to be the most specific gene for prostate cancer.
- PSA Prostate specific antigen
- BPH benign prostatic hyperplasia
- prostatitis can also be elevated, and the PSA gene does not improve the early diagnosis rate of prostate cancer.
- Prostate biopsy is the gold standard for differential diagnosis of different prostate diseases, but it is an invasive examination and often has a false negative.
- Digital rectal examination and related auxiliary examinations such as B-ultrasound, MR I (magnetic resonance imaging) Although non-invasive, it has limitations. Therefore, finding more specific, early, non-invasive detection methods is an inevitable trend in the differential diagnosis of prostate diseases.
- Liquid phase chip also known as liquid chip, It can perform qualitative and quantitative detection on a small number of samples, and has outstanding advantages such as high throughput, easy operation, good repeatability, high sensitivity and wide linear range.
- the system is composed of many microspheres as the main matrix. In the manufacturing process of the microspheres, two different red-classified fluorescences are incorporated. According to the ratio of the two kinds of fluorescence, the spherical matrix is divided into 100 kinds, and 100 different probe molecules can be labeled. Can simultaneously up to 100 in one sample Different target molecules are detected. Depending on the analyte, the surface of the microspheres can be covalently bound to a variety of nucleic acid detection probes, and fluorescent labels are added as the hybridization reaction proceeds.
- Different detection microspheres can be added simultaneously in the same reaction system, so that a small amount of sample can be used for rapid, high-throughput detection.
- the microspheres are arranged into a single column and flow through the liquid phase chip detector by microfluidic technology.
- Each microsphere can be detected by two lasers at the same time.
- the red laser excites the red classified fluorescence on the microsphere, and distinguishes the different reactions to be qualitative;
- the green laser excites the fluorescent label bound to the sample to be tested for quantification.
- the labeled sample to be tested is combined with the probe on a specific microsphere, the light excited by the two lasers can be detected.
- the average fluorescence intensity on a particular microsphere can be automatically statistically analyzed to determine the type and amount of the analyte.
- the invention is based on the high-throughput, easy-to-operate, reproducible, high-sensitivity, wide linear range and the like of the liquid-phase chip technology, and specific genes related to prostate diseases. Testing can be better applied in clinical testing.
- the technical problem to be solved by the present invention is to provide a detection method and a diagnostic kit for a specific gene related to prostate diseases.
- the method and kit comprise detecting the PCA3 gene and/or the PSA gene, which can be Different degrees of prostate disease, especially prostate cancer, for specific and early diagnosis, staging, efficacy observation and prognosis, differential diagnosis of benign prostatic hyperplasia and prostate cancer, and early diagnosis, efficacy observation and prognosis of other related diseases .
- the detection method and the diagnostic kit have the advantages of high sensitivity, high specificity, high accuracy, and rapid detection.
- a liquid phase chip method for the ratio of the specific genes PCA3 gene, PSA gene and PCA3 gene/PSA gene associated with prostate disease comprising the following steps:
- (1) comprising a fluorescently encoded carboxyl (-COOH) microsphere, Beads, which covalently binds to a specific nucleic acid probe designed for mRNA of the PCA3 gene or the PSA gene; or the design comprises two different fluorescent codes
- the carboxylated microspheres Beads each of which is covalently bound to a specific nucleic acid probe designed for the mRNA of the PCA3 gene and the gene PSA;
- the PCA3 gene can be detected as a specific gene for prostate cancer alone, the PSA gene It can be used as a specific gene for related prostate diseases, and PCA3 and PSA genes can be combined to detect specific genes related to prostate diseases, and the relevant prostate diseases can be identified based on the ratio of PCA3 gene/PSA gene. diagnosis.
- PCA3 gene and / or PSA gene can also be combined with other genes for joint detection of specific genes related to prostate diseases;
- microspheres described in the above step (1) of the detection method are polyphenylene microspheres having an average diameter of 5.6 ⁇ m combined with different fluorescent dyes, that is, color-coded beads;
- the PCA3 gene and/or the PSA gene covalently bound to the microspheres
- Specific nucleic acid probes designed for mRNA including the following sequences (wherein the 5' end contains an amino group modification):
- Probes (2), (3), (5), (6) are the same as probe (1), as shown in SEQ ID NO.
- Probe (8) is the same as probe (7), as shown in SEQ ID NO.
- Probe A 5 ' - AminolinkerC12 CAGAATCACCCGAGCAGGTG -3 ' , as shown in SEQ ID NO.
- Probe B 5 ' - AminolinkerC12 GGGGTCAAGAACTCCTCTGG -3 ' , as shown in SEQ ID NO.
- Probe C 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , as shown in SEQ ID NO.
- Probe D is the same as PSA probe A, as shown in SEQ ID NO.
- Probe E is the same as PSA probe B, as shown in SEQ ID NO.
- any one or a combination of more than one of the above sequences may be used.
- step (2) the PCA3 gene and/or the PSA gene are described.
- Upstream and downstream primers designed for mRNA including the following sequences (where the upstream primer contains a biotin tag at the 5' end):
- Primer set (2) upstream 5 '-biotin TGGTGGGAAGGACCTGATGATAC-3', such as SEQ ID NO. 11; downstream 5'-TCTCCCAGGGATCTCTGTGCTT-3', as shown in SEQ ID NO.
- Primer set (3) upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5'-TAAAGGGGCTGGAAATGTGC-3', as shown in SEQ ID NO.
- Primer set (6) upstream 5 ' -biotin AGAAATAGCAAGTGCCGAGAAGC -3 ' , as shown in SEQ ID NO. 19; downstream 5'-CACAGGGCGAGGCTCATC-3', as shown in SEQ ID NO.
- Primer set (9) upstream 5 ' -biotin CGCTTGTGAGGGAAGGACATTAG -3 ' , as shown in SEQ ID NO. 25; downstream 5 ' - GTGAAGCCATCAAGATTTTCTCGTC-3', as SEQ ID NO. Shown
- Primer set A upstream 5 ' -biotin TTGACCCCAAAGAAACTTCAGTGT -3 ' , as shown in SEQ ID NO. 29; downstream 5 ' - TGCCCCATGACGTGATACCT-3', as shown in SEQ ID NO.
- Primer set B upstream 5 ' -biotin TCCCACACCCGCTCTACGAT-3', as SEQ ID NO.31; downstream 5 ' - CGTCCAGCACACAGCATGAACT-3' as shown in SEQ ID NO.
- Primer group C upstream 5 '-biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
- Primer set D upstream 5 ' -biotin GGCAGCATTGAACCAGAGGAGT -3 ' , as shown in SEQ ID NO. 35; downstream 5 ' - CGATGGTGTCCTTGATCCACTT-3', as shown in SEQ ID NO.
- Primer set E upstream 5 ' -biotin TCCTCAGGCCAGGTGATGACT -3 ' , as SEQ ID NO. 37; downstream 5'-CGTCCAGCACACAGCATGAACT-3', as shown in SEQ ID NO.
- any one or a combination of more than one of the above sequences may be used.
- primer sets A, B, C, D, E designed for PSA and the PSA probe A designed above , B, C, D, E correspond one-to-one, that is, the product amplified by the corresponding primer set and the corresponding probe are hybridized in step (3);
- the primers and probe sequences of the internal reference gene ⁇ -actin gene are as follows:
- Upstream primer 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG -3' as SEQ ID NO. 39;
- any one or a combination of more than one of the above sequences may be used.
- a diagnostic kit for detecting a prostate cancer-associated specific gene PCA3, PSA comprising mRNA encoding a PCA3 gene and/or a PSA gene is provided.
- Microsphere mixture of specific probes, microspheres bound to ⁇ -actin gene probe, mRNA against PCA3 gene and/or mRNA of PSA Upstream and downstream primers, upstream and downstream primers of ⁇ -actin gene, streptavidin-PE, control substance (negative control and positive control).
- the controls described in the above kits contain a positive control and a negative control, wherein the positive control contains the PCA3 gene and / Or a plasmid mix of the PSA gene (including the plasmid containing the ⁇ -actin gene), and the negative control does not contain the PCA3 gene, PSA gene. And a plasmid of the ⁇ -actin gene; the microsphere mixture is freely combined according to the needs of different test samples.
- Another aspect of the invention provides A diagnostic kit for detecting specific genes related to prostate diseases, PCA3 and PSA, for detecting in vitro samples, for specific and early diagnosis, staging, efficacy observation and prognosis of different degrees of prostate diseases (especially prostate cancer), The application of differential diagnosis of benign prostatic hyperplasia and prostate cancer, as well as early diagnosis, staging, efficacy observation and prognosis judgment of other related diseases.
- the detection method and kit have high sensitivity, high specificity, high throughput, Good stability, rapid detection, accurate and other advantages, can qualitatively and quantitatively detect PCA3 gene and / or PSA gene, and can calculate the ratio of PCA3 gene / PSA gene, so Better application in clinical testing and diagnosis.
- Primers and probes were synthesized by Invitrogen; Trizol was purchased from Invitrogen; Total RNA extraction kit from TaKaRa The reverse transcription cDNA synthesis kit was purchased from Fermentas; the multiplex PCR kit, different numbered microspheres (surface carboxyl modification), streptavidin-phycoerythrin were purchased from QIAGEN; 1-ethyl-(3) -Dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (EDC) was purchased from Pierce; 2-(N-morpholine)-ethanesulfonic acid (MES), N-lauroyl Sarkosyl and tetramethylammonium chloride (TMAC) were purchased from sigma.
- Example 1 Liquid phase chip method for detecting PCA3 gene in urine by different primers and probe combinations
- the specific detection method includes the following steps:
- Probes (2), (3), (5), (6) are the same as probe (1), as shown in SEQ ID NO.
- Probe (8) is the same as probe (7), as shown in SEQ ID NO.
- the amino-modified oligonucleotide probes were coupled to 11 carboxyl microspheres numbered 11, 13, 15, 21, 25, 61, 62, 63, 64, 65, 66, respectively.
- the full speed vortex numbers are 11, 13 , 15 , 21 , 25 , 61 , 62 , Storage of 11 kinds of carboxyl microspheres of 63, 64, 65, 66 for at least 3 min, resulting in a uniform suspension of microspheres;
- each probe was added 2 ⁇ l (concentration 0.1nmol / ⁇ l) to the corresponding microspheres mixed, vortex mixed;
- the coupled microspheres were diluted 1:100 with d H 2 O;
- Microspheres/ ⁇ l (4 large microspheres total) ⁇ 2.5 ⁇ 100 (dilution factor).
- microspheres coupled with an oligonucleotide probe are as follows: PCA3 probe (1) microsphere 11, PCA3 Probe (2) Microsphere 13, PCA3 Probe (3) Microsphere 15, PCA3 Probe (4) Microsphere 21, PCA3 Probe (5) Microsphere 25, PCA3 Probe (6) Microsphere 61, PCA3 Probe (7) microsphere 62, PCA3 probe (8) microsphere 63, PCA3 probe (9) microsphere 64, PCA3 probe (10) microsphere 65, ⁇ -actin probe microsphere 66, In a proportional mixture, the final concentration of each microsphere is 1500/ ⁇ l, and it is stored at 2-8 °C in the dark.
- the clinical sample No. 1-5 is the urine of patients with prostate cancer (PCa), and the clinical sample of No. 6-8 is the urine of normal people:
- the subject adopts the traditional prostate massage method, that is, the examiner performs a digital rectal examination, from the sides of the prostate to the central groove, massages from the top to the bottom 2 to 3 times, and then massages the central ditch once to squeeze the prostatic fluid into the urethra.
- the subject immediately urinates and collects 20 to 30 ml of the initial urine, which is immediately placed in ice for cooling. At 4 ° C 3000 r /min was centrifuged for 10 min to collect urine sediment, and an appropriate amount of pre-cooled D-Hanks solution was washed twice;
- RNA sample with 50 ul (RNase-free) dH2O at 55-60 ° C for 5-10 min; measure the OD value to quantify the RNA concentration.
- Primer set (2) upstream 5 '-biotin TGGTGGGAAGGACCTGATGATAC-3', such as SEQ ID NO. 11; downstream 5'-TCTCCCAGGGATCTCTGTGCTT-3', as shown in SEQ ID NO.
- Primer set (3) upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5'-TAAAGGGGCTGGAAATGTGC-3', as shown in SEQ ID NO.
- Primer set (6) upstream 5 ' -biotin AGAAATAGCAAGTGCCGAGAAGC -3 ' , as shown in SEQ ID NO. 19; downstream 5'-CACAGGGCGAGGCTCATC-3', as shown in SEQ ID NO.
- Primer set (9) upstream 5 ' -biotin CGCTTGTGAGGGAAGGACATTAG -3 ' , as shown in SEQ ID NO. 25; downstream 5 ' - GTGAAGCCATCAAGATTTTCTCGTC-3', as SEQ ID NO. Shown
- the 2 ⁇ QIAGEN Multiplex PCR Master Mix contains hot-start Taq DNA, MgCl 2 and dNTP Mix.
- PCR amplification procedure 95 ° C for 15 min; 94 ° C for 30 s, 55 ° C for 90 s, 72 ° C for 90 s, 35 cycles; 72 ° C 10 min; 4 ° C insulation.
- microsphere working solution was prepared, and the coupled microspheres were diluted with a 1.5 ⁇ TMAC hybridization solution to a concentration of 150 microspheres/ ⁇ l. (Note: 33 ⁇ l of microsphere working solution is required for each reaction);
- PCA3 was negative in urine of 6-8 normal subjects.
- the expression of the PCA3 gene can be obtained by comparing the fluorescence MFI value exhibited by the patient with the fluorescent MFI value of the ⁇ -actin gene of the internal reference.
- Example 2 Liquid phase chip method for detecting PSA gene in urine by using different primers and probe combinations
- the specific detection method includes the following steps:
- Probe A 5 ' - AminolinkerC12 CAGAATCACCCGAGCAGGTG -3 ' , as shown in SEQ ID NO.
- Probe B 5 ' - AminolinkerC12 GGGGTCAAGAACTCCTCTGG -3 ' , as shown in SEQ ID NO.
- Probe C 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , as shown in SEQ ID NO.
- Probe D same as PSA probe A, as shown in SEQ ID NO.
- Probe E same as PSA probe B, as shown in SEQ ID NO.
- 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 6 tubes, and the others are unchanged.
- microspheres coupled with an oligonucleotide probe are as follows: PSA probe A microsphere 11, PSA probe B microsphere 13 , PSA probe C microsphere 15, PSA probe D microsphere 21, PSA probe E microsphere 25, ⁇ -actin probe microsphere 66, mixed in equal proportion, the final concentration of various microspheres is 1500 / ⁇ l, 2-8 °C protected from light.
- Clinical sample No. 1-5 is the urine of patients with prostate cancer (PCa).
- the clinical sample No. 6-8 is the urine of a normal person, and the preparation method is the same as the preparation method of the sample in Example 1.
- the method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
- Primer set A upstream 5 ' -biotin TTGACCCCAAAGAAACTTCAGTGT -3 ' , as shown in SEQ ID NO. 29; downstream 5 ' - TGCCCCATGACGTGATACCT-3', as shown in SEQ ID NO.
- Primer set B upstream 5 ' -biotin TCCCACACCCGCTCTACGAT-3', as SEQ ID NO.31; downstream 5 ' - CGTCCAGCACACAGCATGAACT-3' as shown in SEQ ID NO.
- Primer group C upstream 5 '-biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
- Primer set D upstream 5 ' -biotin GGCAGCATTGAACCAGAGGAGT -3 ' , as shown in SEQ ID NO. 35; downstream 5 ' - CGATGGTGTCCTTGATCCACTT-3', as shown in SEQ ID NO.
- Primer set E upstream 5 ' -biotin TCCTCAGGCCAGGTGATGACT -3 ' , as SEQ ID NO. 37; downstream 5 ' - CGTCCAGCACACAGCATGAACT-3' as shown in SEQ ID NO.
- the above primer sets A, B, C, D, E designed for PSA and the PSA probe A designed above , B, C, D, E correspond one-to-one, respectively corresponding to PSA primer / probe group 1, 2, 3, 4, 5 (see Table 3 and Table 4);
- the method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
- the expression of the PSA gene can be obtained by comparing the fluorescence MFI value exhibited by the patient with the fluorescent MFI value of the ⁇ -actin gene of the internal reference.
- Example 3 Liquid phase chip method for combined detection of PCA3, PSA and PCA3/PSA ratios in urine
- the specific detection method includes the following steps:
- PCA3 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , as shown in SEQ ID NO.
- PSA 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , as shown in SEQ ID NO.
- 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 3 tubes, and the others are unchanged.
- microspheres coupled with an oligonucleotide probe are as follows: PCA3 probe microsphere 11, PSA probe microsphere 13, respectively , ⁇ -actin probe microspheres 66, mixed in equal proportions, the final concentration of various microspheres is 1500 / ⁇ l, 2-8 ° C protected from light.
- the clinical sample of the patient is the urine of patients with prostate cancer (PCa), and the clinical sample of patients with type 11-20 is the urine of patients with benign prostatic hyperplasia (BPH).
- the preparation method is the same as the preparation method of the sample in Example 1.
- the method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
- PCA3 upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5 ' - TAAAGGGGCTGGAAATGTGC-3' , as shown in SEQ ID NO.
- PSA upstream 5 ' -biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
- the method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
- PCa3/PSA prostate cancer
- BPH benign prostatic hyperplasia
- PCa prostate cancer
- PSA benign prostatic hyperplasia
- the positive fluorescent MFI value is compared with the fluorescent MFI value of the internal reference ⁇ -actin gene, and the expression status of PCA3 gene and PSA gene can be obtained.
- Example 4 Liquid phase chip method for detecting PCA3 gene in blood by different primers and probe combinations
- the specific detection method includes the following steps:
- Probe (3), (5) is the same as probe (1), as shown in SEQ ID NO.
- Oligonucleotide probes containing amino modifications are assigned to numbers 4, 13, 15, and 66, respectively.
- the full speed vortex numbers are 11, 13, 15 respectively.
- the four kinds of carboxyl microspheres of 66 are stored in suspension for at least 3 minutes to produce a uniform suspension of microspheres;
- 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 4 tubes, and the others are unchanged.
- microspheres coupled with an oligonucleotide probe are as follows: PCA3(1) probe microsphere 11, PCA3 (3) The probe microspheres 13, PCA3 (5) probe microspheres 15, and ⁇ -actin probe microspheres 66 were mixed in equal proportions, and the final concentration of each microsphere was 1500 / ⁇ l, and stored at 2-8 ° C in the dark.
- the clinical sample of No. 1-5 is venous blood of patients with prostate cancer (PCa), and the clinical sample of No. 6-8 is venous blood of normal people. Extract RNA by following the steps below:
- Lymphocyte extraction Take 5 ml of anticoagulated venous blood before breakfast, and centrifuge at 3000 r/min for 10 minutes. Min , 4 °C, taking the light yellow layer on the blood cell layer is the lymphocyte;
- the method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
- Primer (1) upstream 5 ' -biotin AAGAAATAGCAAGTGCCGAGAAG -3 ' , as shown in SEQ ID NO. 9; downstream 5 '-GTGTGGCCTCAGATGGTAAAGTC-3', as shown in SEQ ID NO.
- Primer (3) upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5'-TAAAGGGGCTGGAAATGTGC-3', as shown in SEQ ID NO.
- the method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
- the expression of the PCA3 gene can be obtained by comparing the fluorescence MFI value exhibited by the patient with the fluorescent MFI value of the ⁇ -actin gene of the internal reference.
- Example 5 Liquid phase chip method for detecting PSA gene in blood by different primers and probe combinations
- the specific detection method includes the following steps:
- Probe A 5 ' - AminolinkerC12 CAGAATCACCCGAGCAGGTG -3 ' , as shown in SEQ ID NO. 6; Probe C: 5 ' - Aminolinker C12 CACGCTTTTGTTCCTGATGC -3 ' , as SEQ ID NO. 8;
- 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 3 tubes, and the others are unchanged.
- microspheres coupled with an oligonucleotide probe are as follows: PSA probe A microsphere 11, PSA probe C microsphere 13, respectively , ⁇ -actin probe microspheres 66, mixed in equal proportions, the final concentration of various microspheres is 1500 / ⁇ l, 2-8 ° C protected from light.
- Clinical sample No. 1-5 is venous blood in patients with prostate cancer (PCa), 6-8
- the clinical sample is normal human venous blood, and the preparation method is the same as the preparation method of the sample in (2) in Example 4.
- the method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
- Primer A upstream 5 ' -biotin TTGACCCCAAAGAAACTTCAGTGT -3 ' , as shown in SEQ ID NO. 29; downstream 5 ' - TGCCCCATGACGTGATACCT-3', as shown in SEQ ID NO.
- Primer C upstream 5 '-biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
- the primer sets A and C designed for PSA are corresponding to the PSA probes A and C of the above design, and the corresponding combinations are respectively PSA primer/probe set 1, 3 (see Table 10 and Table 11);
- the method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
- the expression of the PSA gene can be obtained by comparing the fluorescence MFI value exhibited by the patient with the fluorescent MFI value of the ⁇ -actin gene of the internal reference.
- Example 6 Combined detection of PCA3 gene, PSA gene and PCA3/PSA ratio in blood Liquid phase chip method
- the specific detection method includes the following steps:
- PCA3 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , as shown in SEQ ID NO.
- PSA 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , as shown in SEQ ID NO.
- 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 3 tubes, and the others are unchanged.
- microspheres coupled with an oligonucleotide probe are as follows: PCA3 probe microsphere 11, PSA probe microsphere 13, respectively , ⁇ -actin probe microspheres 66, mixed in equal proportions, the final concentration of various microspheres is 1500 / ⁇ l, 2-8 ° C protected from light.
- the clinical sample of the patient is venous blood of patients with prostate cancer (PCa), and the clinical sample of patients with type 11-20 is venous blood of patients with benign prostatic hyperplasia (BPH).
- PCa prostate cancer
- BPH benign prostatic hyperplasia
- the preparation method is the same as that of the example 4 (2) The preparation method of the middle sample.
- the method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
- PCA3 upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5 ' - TAAAGGGGCTGGAAATGTGC-3' , as shown in SEQ ID NO.
- PSA upstream 5 ' -biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
- the method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
- PCa3/PSA prostate cancer
- BPH benign prostatic hyperplasia
- PCa prostate cancer
- PSA benign prostatic hyperplasia
- the positive fluorescent MFI value is compared with the fluorescent MFI value of the internal reference ⁇ -actin gene, and the expression status of PCA3 gene and PSA gene can be obtained.
- the invention utilizes The liquid phase chip technology enables the detection method and kit to have the advantages of high sensitivity, high specificity, high throughput, good stability, rapid detection and accuracy, and can be used for the PCA3 gene and/or PSA gene. Qualitative and quantitative tests can be performed, and the ratio of PCA3 gene/PSA gene can be calculated, so that it can be better applied in clinical detection and diagnosis.
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Abstract
Description
本发明涉及体外诊断检测技术领域,具体涉及前列腺疾病相关的特异基因PCA3、PSA的液相芯片检测方法及其诊断试剂盒。 The invention relates to the technical field of in vitro diagnostic detection, in particular to a liquid phase chip detection method for a specific gene PCA3, PSA related to prostate diseases and a diagnostic kit thereof.
PCA3 (prostate cancer antigen 3)基因,又称DD3( differential display code 3 ) 基因,是1999年Bussemakers等发现的一种功能为非编码RNA的基因,由4个外显子和3个内含子组成。PCA3基因仅表达于前列腺组织,在正常前列腺和良性前列腺增生(BPH)组织中其表达极低或不表达,而在前列腺癌(PCa)细胞中呈高表达。因此,PCA3基因目前被认为是前列腺癌最特异的基因。 PCA3 (prostate cancer antigen 3) gene, also known as DD3 ( Differential display code 3 ) The gene, a gene found to be non-coding RNA discovered by Bussemakers et al in 1999, consists of four exons and three introns. The PCA3 gene is expressed only in prostate tissue, and its expression is extremely low or not expressed in normal prostate and benign prostatic hyperplasia (BPH) tissues, but is highly expressed in prostate cancer (PCa) cells. Therefore, the PCA3 gene is currently considered to be the most specific gene for prostate cancer.
前列腺特异性抗原(PSA, prostate specific antigen)目前虽然已被广泛应用于前列腺癌的普查、诊断、分期、疗效观察和预后判断,但PSA基因不具有肿瘤特异性,在 前列腺增生(BPH)和前列腺炎等良性病变中也可升高, 而且PSA基因并不能提高前列腺癌的早期诊断率。 Prostate specific antigen (PSA, prostate specific Although the antigen has been widely used in the screening, diagnosis, staging, efficacy observation and prognosis of prostate cancer, the PSA gene does not have tumor specificity. Benign lesions such as benign prostatic hyperplasia (BPH) and prostatitis can also be elevated, and the PSA gene does not improve the early diagnosis rate of prostate cancer.
前列腺穿刺活检是不同的前列腺疾病鉴别诊断的金标准,但其是有创检查,且常有假阴性的发生。直肠指诊及相关辅助检查如B超、MR I ( 核磁共振成像) 等虽为非侵入性,但都有局限性。因此,寻找更加特异、早期、无创的检测手段是 前列腺疾病鉴别 诊断的必然趋势。 Prostate biopsy is the gold standard for differential diagnosis of different prostate diseases, but it is an invasive examination and often has a false negative. Digital rectal examination and related auxiliary examinations such as B-ultrasound, MR I (magnetic resonance imaging) Although non-invasive, it has limitations. Therefore, finding more specific, early, non-invasive detection methods is an inevitable trend in the differential diagnosis of prostate diseases.
当前国内外广泛使用的分子生物学检测 前列腺 疾病 相关的特异性基因的方法中,荧光定量PCR存在着检测通量的局限性,所以都还不能真正满足临床诊断检测的需要。传统的固相生物芯片(Biochip)技术存在着可重复性差、灵敏度不够好以及操作繁琐的突出弱点。 因此临床上需要有一种检测方法,能够 迅速 、 稳定、 准确地对前列腺疾病 相关的特异基因 进行联合检测, 液相芯片( xMAP )技术正是这样一种新型检测技术 。 Molecular biological tests widely used at home and abroad for prostate diseases Among the related specific gene methods, the quantitative quantitative PCR has the limitation of detecting flux, so it can not really meet the needs of clinical diagnosis and detection. Traditional solid-phase biochip technology (Biochip) technology has outstanding weaknesses such as poor repeatability, insufficient sensitivity, and cumbersome operation. Therefore, there is a need for a clinical detection method that can rapidly, stably and accurately detect the specific genes related to prostate diseases. The liquid phase chip (xMAP) technology is such a new detection technology. .
液相芯片 又称液态芯片, 能够对少量样本进行定性、定量检测,具有高通量、操作简便、重复性好、灵敏度高、线性范围宽等突出优点。该系统是由许多微球为主要基质构成的, 在微球的制造过程当中,掺入了两种不同的红色分类荧光,根据这两种荧光的比例不同,把球形基质分为100种 , 可以标记上 100 种不同的探针分子 , 能同时对一个样品中多达 100 种不同的目标分子进行检测。根据检测物的不同,微球表面可以共价结合各种各样的核酸检测探针,在杂交反应进行时再加上荧光标记。在同一反应体系中可以同时加入不同的检测微球,这样就可以利用少量的样本进行快速、高通量的检测。反应结束后,通过微流体技术将微球排成单列快速流经液相芯片检测仪 , 每个微球可同时被两束激光检测到 , 红色激光激发微球上的红色分类荧光, 将各个不同的反应区分开来而 定性 ; 绿色激光则激发结合在待测样本上的荧光标记进行定量。当标记好的待测样本与特定微球上的探针结合在一起时,两束激光所激发的光均可被检测到。最后 , 通过计算机的高速数字信号处理器 , 可以自动统计分析得出特定微球上的平均荧光强度,从而确定检测物的种类和数量。 Liquid phase chip, also known as liquid chip, It can perform qualitative and quantitative detection on a small number of samples, and has outstanding advantages such as high throughput, easy operation, good repeatability, high sensitivity and wide linear range. The system is composed of many microspheres as the main matrix. In the manufacturing process of the microspheres, two different red-classified fluorescences are incorporated. According to the ratio of the two kinds of fluorescence, the spherical matrix is divided into 100 kinds, and 100 different probe molecules can be labeled. Can simultaneously up to 100 in one sample Different target molecules are detected. Depending on the analyte, the surface of the microspheres can be covalently bound to a variety of nucleic acid detection probes, and fluorescent labels are added as the hybridization reaction proceeds. Different detection microspheres can be added simultaneously in the same reaction system, so that a small amount of sample can be used for rapid, high-throughput detection. After the reaction, the microspheres are arranged into a single column and flow through the liquid phase chip detector by microfluidic technology. Each microsphere can be detected by two lasers at the same time. The red laser excites the red classified fluorescence on the microsphere, and distinguishes the different reactions to be qualitative; The green laser excites the fluorescent label bound to the sample to be tested for quantification. When the labeled sample to be tested is combined with the probe on a specific microsphere, the light excited by the two lasers can be detected. At last , Through the computer's high-speed digital signal processor, the average fluorescence intensity on a particular microsphere can be automatically statistically analyzed to determine the type and amount of the analyte.
本发明基于液相芯片技术的高通量、操作简便、重复性好、灵敏度高、线性范围宽等突出优点,对前列腺疾病相关的特异基因 进行检测,能够在临床检测上得到更好的应用。 The invention is based on the high-throughput, easy-to-operate, reproducible, high-sensitivity, wide linear range and the like of the liquid-phase chip technology, and specific genes related to prostate diseases. Testing can be better applied in clinical testing.
本发明需要解决的技术问题是提供 一种前列腺疾病相关的特异基因的检测方法及诊断试剂盒 。该方法及试剂盒包含对 PCA3 基因 和/或PSA基因 进行检测,可以对 不同程度的前列腺疾病,尤其是前列腺癌进行特异和早期诊断、分期、疗效观察和预后判断,对良性前列腺增生和前列腺癌进行鉴别诊断,以及对其他相关疾病进行早期诊断、疗效观察和预后判断 。本检测方法及诊断试剂盒具有高灵敏度、高特异性、高准确度、检测迅速等优点。 The technical problem to be solved by the present invention is to provide a detection method and a diagnostic kit for a specific gene related to prostate diseases. . The method and kit comprise detecting the PCA3 gene and/or the PSA gene, which can be Different degrees of prostate disease, especially prostate cancer, for specific and early diagnosis, staging, efficacy observation and prognosis, differential diagnosis of benign prostatic hyperplasia and prostate cancer, and early diagnosis, efficacy observation and prognosis of other related diseases . The detection method and the diagnostic kit have the advantages of high sensitivity, high specificity, high accuracy, and rapid detection.
为解决上述技术问题,在本发明的一方面,提供一种检测 前列腺疾病相关的特异基因PCA3基因、PSA基因以及PCA3基因/PSA基因的比值的 液相芯片 方法,包括以下步骤: In order to solve the above technical problem, in an aspect of the present invention, a detection is provided A liquid phase chip method for the ratio of the specific genes PCA3 gene, PSA gene and PCA3 gene/PSA gene associated with prostate disease, comprising the following steps:
(1)包含一种荧光编码的羧基(-COOH)微球Beads,该微球上共价结合针对PCA3基因或PSA基因的mRNA所设计的特异性核酸探针;或者设计包含两种不同荧光编码的羧基微球Beads,每种微球上分别共价结合针对PCA3基因和基因PSA的mRNA所设计的特异性核酸探针;所述的PCA3基因可以单独作为前列腺癌的特异基因进行检测,PSA基因可以单独作为相关的前列腺疾病的特异基因进行检测,PCA3和PSA基因可以组合起来作为相关前列腺疾病的特异性基因进行联合检测,同时还可以根据PCA3基因/PSA基因的比值对相关的前列腺疾病进行鉴别诊断。PCA3基因和 / 或PSA基因也 可以与其它基因组合起来作为相关前列腺疾病的特异性基因进行联合检测; (1) comprising a fluorescently encoded carboxyl (-COOH) microsphere, Beads, which covalently binds to a specific nucleic acid probe designed for mRNA of the PCA3 gene or the PSA gene; or the design comprises two different fluorescent codes The carboxylated microspheres Beads, each of which is covalently bound to a specific nucleic acid probe designed for the mRNA of the PCA3 gene and the gene PSA; the PCA3 gene can be detected as a specific gene for prostate cancer alone, the PSA gene It can be used as a specific gene for related prostate diseases, and PCA3 and PSA genes can be combined to detect specific genes related to prostate diseases, and the relevant prostate diseases can be identified based on the ratio of PCA3 gene/PSA gene. diagnosis. PCA3 gene and / or PSA gene can also be combined with other genes for joint detection of specific genes related to prostate diseases;
(2) 针对PCA3基因和 / 或PSA基因 的mRNA,分别设计上下游引物,其中一条引物含有生物素(Biotin)标记;通过逆转录PCR扩增出相应的产物; (2) Targeting the PCA3 gene and / or PSA gene mRNA, respectively, designed upstream and downstream primers, one of which contains biotin (Biotin) label; the corresponding product is amplified by reverse transcription PCR;
(3)含有特异性核酸探针的微球与PCA3基因 和/或PSA 基因的mRNA的逆转录扩增产物杂交后,加入链霉亲和素-藻红蛋白(Streptavidin-PE),通过液相芯片法xMAP检测荧光信号; (3) Microspheres containing specific nucleic acid probes and PCA3 gene and/or PSA After hybridization of the reverse transcription amplification product of the mRNA of the gene, streptavidin-PE is added, and the fluorescent signal is detected by liquid phase chip method xMAP;
(4)将检测到的荧光信号与内参基因的荧光信号进行比较,从而确定检测样品中是否存在前列腺疾病相关的基因PCA3基因和/或PSA基因,及其在样品中的表达状况, 同时亦可计算出PCA3基因/PSA基因的比值。 (4) comparing the detected fluorescent signal with the fluorescent signal of the reference gene to determine whether there is a prostate disease-related gene PCA3 gene and/or PSA gene in the test sample, and its expression in the sample, The ratio of the PCA3 gene/PSA gene can also be calculated.
以上检测方法的步骤(1)中所述的微球是平均直径为5.6μm,结合了不同荧光染料的聚苯烯微球,即色彩编码微球(color-coded beads); The microspheres described in the above step (1) of the detection method are polyphenylene microspheres having an average diameter of 5.6 μm combined with different fluorescent dyes, that is, color-coded beads;
步骤(1)中,所述的共价结合于微球上的针对PCA3基因和 / 或PSA基因 的mRNA所设计的特异性核酸探针,包括如下序列(其中5'端含氨基修饰): In the step (1), the PCA3 gene and/or the PSA gene covalently bound to the microspheres Specific nucleic acid probes designed for mRNA, including the following sequences (wherein the 5' end contains an amino group modification):
针对PCA3 基因 的mRNA : mRNA for the PCA3 gene:
探针(1) 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , 如 SEQ ID NO.1 所示; Probe (1) 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , as shown in SEQ ID NO.
探针(2)、(3)、(5)、(6)同探针(1), 如 SEQ ID NO.1 所示; Probes (2), (3), (5), (6) are the same as probe (1), as shown in SEQ ID NO.
探针(4) 5 ' - AminolinkerC12 CTCACCTCTGTATCATCAG -3 ' , 如 SEQ ID NO.2 所示; Probe (4) 5 ' - AminolinkerC12 CTCACCTCTGTATCATCAG -3 ' , as shown in SEQ ID NO. 2;
探针(7) 5 ' - AminolinkerC12 ATCTCTGTGCTTCCTTTTGT -3 ' , 如 SEQ ID NO.3 所示;Probe (7) 5 ' - AminolinkerC12 ATCTCTGTGCTTCCTTTTGT -3 ' as shown in SEQ ID NO. 3;
探针(8)同探针(7), 如 SEQ ID NO.3 所示 Probe (8) is the same as probe (7), as shown in SEQ ID NO.
探针(9) 5 ' - AminolinkerC12 CAAATCTGTAATCCCGTTCA -3 ' , 如 SEQ ID NO.4 所示; Probe (9) 5 ' - AminolinkerC12 CAAATCTGTAATCCCGTTCA -3 ' , as shown in SEQ ID NO. 4;
探针(10) 5 ' - AminolinkerC12 TATGTGTCAAGAGGAGAGCC -3 ' , 如 SEQ ID NO.5 所示;Probe (10) 5 ' - AminolinkerC12 TATGTGTCAAGAGGAGAGCC -3 ' as shown in SEQ ID NO. 5;
或者包含有上述序列(含互补序列)的向5'端或/和3'端延长的序列; Or a sequence comprising the above sequence (including a complementary sequence) extending to the 5' end or/and the 3' end;
或者与上述序列(含互补序列)同源性大于85%的序列; Or a sequence having greater than 85% homology to the above sequence (comprising a complementary sequence);
或者与上述序列的碱基互补序列; Or a base complementary sequence to the above sequence;
或者使用上述所有序列中的任意一种或一种以上的组合; Or using any one or more of the above sequences;
针对PSA 基因 的mRNA : mRNA for the PSA gene:
探针A: 5 ' - AminolinkerC12 CAGAATCACCCGAGCAGGTG -3 ' , 如 SEQ ID NO.6 所示; Probe A: 5 ' - AminolinkerC12 CAGAATCACCCGAGCAGGTG -3 ' , as shown in SEQ ID NO.
探针B: 5 ' - AminolinkerC12 GGGGTCAAGAACTCCTCTGG -3 ' , 如 SEQ ID NO.7 所示; Probe B: 5 ' - AminolinkerC12 GGGGTCAAGAACTCCTCTGG -3 ' , as shown in SEQ ID NO.
探针C: 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , 如 SEQ ID NO.8 所示;Probe C: 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , as shown in SEQ ID NO.
探针D同PSA探针A, 如 SEQ ID NO.6 所示; Probe D is the same as PSA probe A, as shown in SEQ ID NO.
探针E同PSA探针B, 如 SEQ ID NO.7 所示; Probe E is the same as PSA probe B, as shown in SEQ ID NO.
或者包含有上述序列(含互补序列)的向5'端或/和3'端延长的序列; Or a sequence comprising the above sequence (including a complementary sequence) extending to the 5' end or/and the 3' end;
或者与上述序列(含互补序列)同源性大于85%的序列; Or a sequence having greater than 85% homology to the above sequence (comprising a complementary sequence);
或者与上述序列的碱基互补序列; Or a base complementary sequence to the above sequence;
或者使用上述所有序列中的任意一种或一种以上的组合。 Alternatively, any one or a combination of more than one of the above sequences may be used.
步骤(2)中,所述的针对PCA3基因和 / 或PSA基因 的mRNA所设计的上下游引物,包括如下序列(其中上游引物5'端含生物素标签): In step (2), the PCA3 gene and/or the PSA gene are described. Upstream and downstream primers designed for mRNA, including the following sequences (where the upstream primer contains a biotin tag at the 5' end):
针对PCA3 基因 的mRNA : mRNA for the PCA3 gene:
引物组(1)上游 5 ' -biotin AAGAAATAGCAAGTGCCGAGAAG -3 ' ,如 SEQ ID NO.9 所示; 下游 5 ' -GTGTGGCCTCAGATGGTAAAGTC-3' ,如 SEQ ID NO.10 所示; Primer set (1) upstream 5 ' -biotin AAGAAATAGCAAGTGCCGAGAAG -3 ' , as shown in SEQ ID NO. 9; downstream 5 '-GTGTGGCCTCAGATGGTAAAGTC-3', as shown in SEQ ID NO.
引物组(2)上游 5 ' -biotin TGGTGGGAAGGACCTGATGATAC-3',如 SEQ ID NO.11 所示; 下游 5 ' - TCTCCCAGGGATCTCTGTGCTT-3' ,如 SEQ ID NO.12 所示; Primer set (2) upstream 5 '-biotin TGGTGGGAAGGACCTGATGATAC-3', such as SEQ ID NO. 11; downstream 5'-TCTCCCAGGGATCTCTGTGCTT-3', as shown in SEQ ID NO.
引物组(3)上游 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' ,如 SEQ ID NO.13 所示; 下游 5 ' - TAAAGGGGCTGGAAATGTGC-3' ,如 SEQ ID NO.14 所示; Primer set (3) upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5'-TAAAGGGGCTGGAAATGTGC-3', as shown in SEQ ID NO.
引物组(4)上游 5 ' -biotin AGCCGAGGGAGACCAGGAAG -3 ' ,如 SEQ ID NO.15 所示;下游 5 ' - CAGCAGATGTGTGGCCTCAGAT-3' ,如 SEQ ID NO.16 所示; Primer set (4) upstream 5 '-biotin AGCCGAGGGAGACCAGGAAG -3 ' , as SEQ ID NO. 15; downstream 5 ' - CAGCAGATGTGTGGCCTCAGAT-3' as shown in SEQ ID NO.
引物组(5)上游 5 ' -biotin CCGAGGGAGACCAGGAAGAT -3 ' ,如 SEQ ID NO.17 所示; 下游 5 ' - CACAGGGCGAGGCTCATC-3' ,如 SEQ ID NO.18 所示; Primer set (5) upstream 5 '-biotin CCGAGGGAGACCAGGAAGAT -3 ' , as SEQ ID NO. 17; downstream 5 ' - CACAGGGCGAGGCTCATC-3' as shown in SEQ ID NO.
引物组(6)上游 5 ' -biotin AGAAATAGCAAGTGCCGAGAAGC -3 ' ,如 SEQ ID NO.19 所示; 下游 5 ' - CACAGGGCGAGGCTCATC-3' ,如 SEQ ID NO.20 所示; Primer set (6) upstream 5 ' -biotin AGAAATAGCAAGTGCCGAGAAGC -3 ' , as shown in SEQ ID NO. 19; downstream 5'-CACAGGGCGAGGCTCATC-3', as shown in SEQ ID NO.
引物组(7)上游 5 ' -biotin TATCCACACACACAGGAAGCAC -3 ' ,如 SEQ ID NO.21 所示; 下游 5 ' - CCTCTCATTGGTAATGCTCACTTT-3' ,如 SEQ ID NO.22 所示; Primer set (7) upstream 5 ' -biotin TATCCACACACACAGGAAGCAC -3 ' , as shown in SEQ ID NO. 21; downstream 5 ' - CCTCTCATTGGTAATGCTCACTTT-3', as SEQ ID NO. Shown
引物组(8)上游 5 ' -biotin AAGGCTGCTGACTTTACCATCTG -3 ' ,如 SEQ ID NO.23 所示; 下游 5 ' - TCTAATGTCCTTCCCTCACAAGC-3' ,如 SEQ ID NO.24 所示; Primer set (8) upstream 5 ' -biotin AAGGCTGCTGACTTTACCATCTG -3 ' , as shown in SEQ ID NO. 23; downstream 5 ' - TCTAATGTCCTTCCCTCACAAGC-3', as shown in SEQ ID NO.
引物组(9)上游 5 ' -biotin CGCTTGTGAGGGAAGGACATTAG -3 ' ,如 SEQ ID NO.25 所示; 下游 5 ' - GTGAAGCCATCAAGATTTTCTCGTC-3' ,如 SEQ ID NO.26 所示; Primer set (9) upstream 5 ' -biotin CGCTTGTGAGGGAAGGACATTAG -3 ' , as shown in SEQ ID NO. 25; downstream 5 ' - GTGAAGCCATCAAGATTTTCTCGTC-3', as SEQ ID NO. Shown
引物组(10)上游 5 ' -biotin CAGCAGGACCCAACGCAT -3 ' ,如 SEQ ID NO.27 所示; 下游 5 ' - GAGAGAGGATTGGTAAGCGATGTG-3' ,如 SEQ ID NO.28 所示; Primer set (10) upstream 5 '-biotin CAGCAGGACCCAACGCAT -3 ' , as SEQ ID NO. 27; downstream 5'-GAGAGAGGATTGGTAAGCGATGTG-3' as shown in SEQ ID NO.
或者包含有上述序列(含互补序列)的向5'端或/和3'端延长的序列; Or a sequence comprising the above sequence (including a complementary sequence) extending to the 5' end or/and the 3' end;
或者与上述序列(含互补序列)同源性大于85%的序列; Or a sequence having greater than 85% homology to the above sequence (comprising a complementary sequence);
或者与上述序列的碱基互补序列; Or a base complementary sequence to the above sequence;
或者使用上述所有序列中的任意一种或一种以上的组合; Or using any one or more of the above sequences;
针对PSA 基因 的mRNA: mRNA for the PSA gene:
引物组A:上游 5 ' -biotin TTGACCCCAAAGAAACTTCAGTGT -3 ' ,如 SEQ ID NO.29 所示; 下游 5 ' - TGCCCCATGACGTGATACCT-3' ,如 SEQ ID NO.30 所示; Primer set A: upstream 5 ' -biotin TTGACCCCAAAGAAACTTCAGTGT -3 ' , as shown in SEQ ID NO. 29; downstream 5 ' - TGCCCCATGACGTGATACCT-3', as shown in SEQ ID NO.
引物组B:上游 5 ' -biotin TCCCACACCCGCTCTACGAT-3',如 SEQ ID NO.31 所示; 下游 5 ' - CGTCCAGCACACAGCATGAACT-3' ,如 SEQ ID NO.32 所示 Primer set B: upstream 5 ' -biotin TCCCACACCCGCTCTACGAT-3', as SEQ ID NO.31; downstream 5 ' - CGTCCAGCACACAGCATGAACT-3' as shown in SEQ ID NO.
引物组C:上游 5 ' -biotin TGCACCCCTCATCCTGTCTC -3 ' ,如 SEQ ID NO.33 所示; 下游 5 ' - GCTGTGGCTGACCTGAAATACC-3' ,如 SEQ ID NO.34 所示 Primer group C: upstream 5 '-biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
引物组D:上游 5 ' -biotin GGCAGCATTGAACCAGAGGAGT -3 ' ,如 SEQ ID NO.35 所示; 下游 5 ' - CGATGGTGTCCTTGATCCACTT-3' ,如 SEQ ID NO.36 所示 Primer set D: upstream 5 ' -biotin GGCAGCATTGAACCAGAGGAGT -3 ' , as shown in SEQ ID NO. 35; downstream 5 ' - CGATGGTGTCCTTGATCCACTT-3', as shown in SEQ ID NO.
引物组E:上游 5 ' -biotin TCCTCAGGCCAGGTGATGACT -3 ' ,如 SEQ ID NO.37 所示; 下游 5 ' - CGTCCAGCACACAGCATGAACT-3' ,如 SEQ ID NO.38 所示; Primer set E: upstream 5 ' -biotin TCCTCAGGCCAGGTGATGACT -3 ' , as SEQ ID NO. 37; downstream 5'-CGTCCAGCACACAGCATGAACT-3', as shown in SEQ ID NO.
或者包含有上述序列(含互补序列)的向5'端或/和3'端延长的序列; Or a sequence comprising the above sequence (including a complementary sequence) extending to the 5' end or/and the 3' end;
或者与上述序列(含互补序列)同源性大于85%的序列; Or a sequence having greater than 85% homology to the above sequence (comprising a complementary sequence);
或者与上述序列的碱基互补序列; Or a base complementary sequence to the above sequence;
或者使用上述所有序列中的任意一种或一种以上的组合。 Alternatively, any one or a combination of more than one of the above sequences may be used.
以上针对PCA3所设计的引物组 (1)、(2)、(3)、(4)、(5)、(6)、(7)、(8)、(9)、(10)与上述设计的 PCA3 探针 (1)、(2)、(3)、(4)、(5)、(6)、(7)、(8)、(9)、(10)一一对应,即相应的引物组 扩增出的产物与相对应的探针进行步骤(3)中的杂交 ; The above primer set designed for PCA3 (1), (2), (3), (4), (5), (6), (7), (8), (9), (10) and PCA3 probes designed as described above (1), (2), (3), (4), (5), (6), (7), (8), (9), (10) one-to-one correspondence, that is, the corresponding primer set amplification The product is hybridized with the corresponding probe in step (3) ;
以上针对PSA所设计的引物组A 、B、C、D、E与上述设计的 PSA 探针A 、B、C、D、E一一对应,即相应的引物组 扩增出的产物与相对应的探针进行步骤(3)中的杂交 ; The above primer sets A, B, C, D, E designed for PSA and the PSA probe A designed above , B, C, D, E correspond one-to-one, that is, the product amplified by the corresponding primer set and the corresponding probe are hybridized in step (3);
步骤(4)中,所述的内参基因β-actin基因的引物和探针序列如下: In the step (4), the primers and probe sequences of the internal reference gene β-actin gene are as follows:
上游引物 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG -3' , 如 SEQ ID NO.39 所示; Upstream primer 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG -3' , as SEQ ID NO. 39;
下游引物 5'-GCTGGGGTGTTGAAGGTCTC -3', 如 SEQ ID NO.40 所示; Downstream primer 5'-GCTGGGGTGTTGAAGGTCTC -3', as SEQ ID NO. 40 Shown
探针 5 ' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' , 如 SEQ ID NO.41 所示; Probe 5 ' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' , as shown in SEQ ID NO. 41;
或者包含有上述序列(含互补序列)的向5'端或/和3'端延长的序列; Or a sequence comprising the above sequence (including a complementary sequence) extending to the 5' end or/and the 3' end;
或者与上述序列(含互补序列)同源性大于85%的序列; Or a sequence having greater than 85% homology to the above sequence (comprising a complementary sequence);
或者与上述序列的碱基互补序列; Or a base complementary sequence to the above sequence;
或者使用上述所有序列中的任意一种或一种以上的组合。 Alternatively, any one or a combination of more than one of the above sequences may be used.
在本发明另一方面,提供一种检测前列腺疾病相关的特异基因PCA3、PSA的诊断试剂盒,包含共价结合了PCA3基因的mRNA 和/或PSA基因的 mRNA 特异性探针的微球混合物、结合了β-actin基因探针的微球、针对PCA3基因的mRNA 和/或PSA的 mRNA 的上下游引物、β-actin基因的上下游引物、链霉亲和素-藻红蛋白Streptavidin-PE、质控品(阴性对照和阳性对照)。 In another aspect of the present invention, a diagnostic kit for detecting a prostate cancer-associated specific gene PCA3, PSA comprising mRNA encoding a PCA3 gene and/or a PSA gene is provided. Microsphere mixture of specific probes, microspheres bound to β-actin gene probe, mRNA against PCA3 gene and/or mRNA of PSA Upstream and downstream primers, upstream and downstream primers of β-actin gene, streptavidin-PE, control substance (negative control and positive control).
以上试剂盒中所述的质控品包含阳性对照和阴性对照,其中阳性对照为含有PCA3基因和 / 或PSA基因的 质粒混合液(包括含β-actin基因的质粒),阴性对照品为不含有PCA3基因 、PSA基因 及β-actin基因的质粒;所述的微球混合物,根据不同检测样品的需要自由组合。 The controls described in the above kits contain a positive control and a negative control, wherein the positive control contains the PCA3 gene and / Or a plasmid mix of the PSA gene (including the plasmid containing the β-actin gene), and the negative control does not contain the PCA3 gene, PSA gene. And a plasmid of the β-actin gene; the microsphere mixture is freely combined according to the needs of different test samples.
本发明的 另一方面,提供 一种检测前列腺疾病相关的特异基因PCA3、PSA的诊断试剂盒在检测体外样品,对不同程度的前列腺疾病(尤其是前列腺癌)进行特异和早期诊断、分期、疗效观察和预后判断中的应用,对良性前列腺增生和前列腺癌进行鉴别诊断中的应用,以及对其他相关疾病进行早期诊断、分期、疗效观察和预后判断中的应用。 Another aspect of the invention provides A diagnostic kit for detecting specific genes related to prostate diseases, PCA3 and PSA, for detecting in vitro samples, for specific and early diagnosis, staging, efficacy observation and prognosis of different degrees of prostate diseases (especially prostate cancer), The application of differential diagnosis of benign prostatic hyperplasia and prostate cancer, as well as early diagnosis, staging, efficacy observation and prognosis judgment of other related diseases.
由于本发明利用了 液相芯片技术,使检测 方法及试剂盒具有 高灵敏度、 高特异性、 高通量、 稳定性好、 检测迅速、 准确 等突出优点, 能够对PCA3基因和 / 或PSA基因 进行定性和定量检测,并能计算出PCA3基因/PSA基因的比值,因此能 在临床检测及诊断上得到更好的应用。 Since the present invention utilizes liquid phase chip technology, the detection method and kit have high sensitivity, high specificity, high throughput, Good stability, rapid detection, accurate and other advantages, can qualitatively and quantitatively detect PCA3 gene and / or PSA gene, and can calculate the ratio of PCA3 gene / PSA gene, so Better application in clinical testing and diagnosis.
下面结合具体实施例详细说明本发明,但并不能理解为对本发明的限制。所述的实施例只提供阐明核酸引物、探针、检测方法、试剂盒的制作和应用方法而不为其所限制。期间各种变化形式在本发明和所述的权项的范围内是可预期的。 The invention is described in detail below with reference to specific embodiments, but is not to be construed as limiting. The examples described are merely illustrative of the nucleic acid primers, probes, detection methods, kits, and methods of application and are not limited thereto. Various variations are contemplated as being within the scope of the invention and the scope of the invention.
实验材料: Experimental Materials:
引物和探针均由invitrogen公司合成; Trizol 购自 invitrogen 公司 ; 总RNA提取试剂盒 购自 TaKaRa 公司 ;逆转录cDNA合成试剂盒购自Fermentas公司;多重PCR试剂盒、不同编号的微球(表面羧基修饰)、链霉亲和素-藻红蛋白均购自QIAGEN公司;1-乙基-(3-二甲基氨基丙基)-3-乙基碳二亚胺盐酸盐(EDC)购自Pierce公司;2-(N-吗啉)-乙磺酸(MES)、N-月桂酰基氨酸钠(Sarkosyl)、四甲基氯化铵(TMAC)均购自sigma公司。 Primers and probes were synthesized by Invitrogen; Trizol was purchased from Invitrogen; Total RNA extraction kit from TaKaRa The reverse transcription cDNA synthesis kit was purchased from Fermentas; the multiplex PCR kit, different numbered microspheres (surface carboxyl modification), streptavidin-phycoerythrin were purchased from QIAGEN; 1-ethyl-(3) -Dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (EDC) was purchased from Pierce; 2-(N-morpholine)-ethanesulfonic acid (MES), N-lauroyl Sarkosyl and tetramethylammonium chloride (TMAC) were purchased from sigma.
缓冲液、杂交液及其它溶液的配制: Preparation of buffers, hybrids and other solutions:
偶联缓冲液,pH4.5 250 ml Coupling buffer, pH 4.5 250 ml
MES 4.88g ; MES 4.88g ;
1.5 ×TMAC杂交溶液 250 ml 1.5 × TMAC Hybrid Solution 250 ml
5M TMAC 225 ml 5M TMAC 225 ml
20% Sarkosyl 1.88 ml 20% Sarkosyl 1.88 ml
1M Tris-HCl ,pH8.0 18.75 ml 1M Tris-HCl, pH 8.0 18.75 ml
0.5M EDTA ,pH8.0 3.0 ml 0.5M EDTA, pH 8.0 3.0 ml
H2O 1.37 ml ;H 2 O 1.37 ml ;
1.5 ×TMAC杂交溶液 250 ml 1.5 × TMAC Hybrid Solution 250 ml
5M TMAC 150 ml 5M TMAC 150 ml
20% Sarkosyl 1.25 ml 20% Sarkosyl 1.25 ml
1M Tris-HCl ,pH8.0 12.5 ml 1M Tris-HCl, pH 8.0 12.5 ml
0.5M EDTA ,pH8.0 2.0 ml 0.5M EDTA, pH 8.0 2.0 ml
H 2 O 84.25 ml ;H 2 O 84.25 ml ;
TE 缓冲液,pH8.0 500 ml TE buffer, pH 8.0 500 ml
1M Tris-HCl ,pH8.0 5 ml 1M Tris-HCl, pH 8.0 5 ml
0.5M EDTA ,pH8.0 1 ml 0.5M EDTA, pH 8.0 1 ml
H2O 444 mlH 2 O 444 ml
D-Hanks 液的配制:KCl 0.4g,NaCI 8.0g,NaHC0 3 0.35 g ,Na 2 HP04 ·12H 2 0 0.15 g , KH 2 P04 0.06g ,溶于1000 ml dH2O 。于15 KPa×30 min灭菌,4℃保存。Preparation of D-Hanks solution: KCl 0.4g, NaCI 8.0g, NaHC0 3 0.35 g, Na 2 HP04 · 12H 2 0 0.15 g, KH 2 P04 0.06 g, dissolved in 1000 ml dH 2 O. Sterilize at 15 KPa x 30 min and store at 4 °C.
实施例 1 : 不同引物及探针组合检测尿液中PCA3基因的液相芯片方法 Example 1 : Liquid phase chip method for detecting PCA3 gene in urine by different primers and probe combinations
具体的检测方法包括如下步骤: The specific detection method includes the following steps:
一.检测PCA3基因的微球混合液的制备 One. Preparation of microsphere mixture for detecting PCA3 gene
1. 按照以下序列合成寡核苷酸探针: 1. Synthesize oligonucleotide probes according to the following sequence:
针对PCA3 基因 的mRNA : mRNA for the PCA3 gene:
探针(1) 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , 如 SEQ ID NO.1 所示; Probe (1) 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , as shown in SEQ ID NO.
探针(2)、(3)、(5)、(6)同探针(1), 如 SEQ ID NO.1 所示; Probes (2), (3), (5), (6) are the same as probe (1), as shown in SEQ ID NO.
探针(4) 5 ' - AminolinkerC12 CTCACCTCTGTATCATCAG -3 ' , 如 SEQ ID NO.2 所示; 探针(7) 5 ' - AminolinkerC12 ATCTCTGTGCTTCCTTTTGT -3 ' , 如 SEQ ID NO.3 所示; Probe (4) 5 ' - AminolinkerC12 CTCACCTCTGTATCATCAG -3 ' , as shown in SEQ ID NO. 2; probe (7) 5 ' - AminolinkerC12 ATCTCTGTGCTTCCTTTTGT -3 ' , as SEQ ID NO. 3;
探针(8)同探针(7), 如 SEQ ID NO.3 所示 Probe (8) is the same as probe (7), as shown in SEQ ID NO.
探针(9) 5 ' - AminolinkerC12 CAAATCTGTAATCCCGTTCA -3 ' , 如 SEQ ID NO.4 所示; 探针(10) 5 ' - AminolinkerC12 TATGTGTCAAGAGGAGAGCC -3 ' , 如 SEQ ID NO.5 所示; Probe (9) 5 ' - AminolinkerC12 CAAATCTGTAATCCCGTTCA -3 ' , as shown in SEQ ID NO. 4; probe (10) 5 ' - Aminolinker C12 TATGTGTCAAGAGGAGAGCC -3 ' , as shown in SEQ ID NO. 5;
β-actin基因: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' , 如 SEQ ID NO.41 所示。 --actin gene: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' is shown as SEQ ID NO.
2.将含有氨基修饰的寡核苷酸探针分别与编号为11、13、15、21、25、61、62、63、64、65、66号的11种羧基微球偶联 2. The amino-modified oligonucleotide probes were coupled to 11 carboxyl microspheres numbered 11, 13, 15, 21, 25, 61, 62, 63, 64, 65, 66, respectively.
2.1 取出一小份-20℃保存的新鲜干粉状EDC平衡到室温; 2.1 Take out a small portion of fresh dry powdered EDC stored at -20 ° C to equilibrate to room temperature;
2.2 用d H2O 分别 溶解PCA3、β-actin的寡核苷酸探针,浓度为1mM(1nmol/μl);2.2 Dissolving the oligonucleotide probes of PCA3 and β-actin with d H 2 O at a concentration of 1 mM (1 nmol/μl);
2.3 分别全速涡旋编号为 11 、 13 、 15 、 21 、 25 、 61 、 62 、 63 、 64 、 65 、 66 号的 11 种羧基微球储存悬液至少3min,产生均一的微球悬液; 2.3 The full speed vortex numbers are 11, 13 , 15 , 21 , 25 , 61 , 62 , Storage of 11 kinds of carboxyl microspheres of 63, 64, 65, 66 for at least 3 min, resulting in a uniform suspension of microspheres;
2.4 分别取2.5×106微球储存悬液到十一个离心管中;2.4 Take 2.5×10 6 microspheres to store the suspension into eleven centrifuge tubes;
2.5 10,000g ,离心,1-2min; 2.5 10,000g, centrifuged, 1-2min;
2.6 移除上清液,用50μl 0.1M MES,pH4.5的偶联缓冲液,重悬微球,涡旋震荡20秒; 2.6 Remove the supernatant with 50μl 0.1M MES, pH 4.5 coupling buffer, resuspend the microspheres, vortex for 20 seconds;
2.7 将十一种浓度为1mM寡核苷酸探针分别用d H2O 以1:10的比例稀释,使其浓度为0.1nmol/μl;2.7 eleven concentrations of 1 mM oligonucleotide probes were diluted with d H 2 O at a ratio of 1:10 to a concentration of 0.1 nmol / μl;
2.8每种探针各加入2μl(浓度为0.1nmol/μl)到混匀的相应的微球里,涡旋混合; 2.8 each probe was added 2 μl (concentration 0.1nmol / μl) to the corresponding microspheres mixed, vortex mixed;
2.9 用d H2O 配制 10mg/ml 的新鲜EDC溶液(注意:保持EDC粉末干燥,便于下一步EDC的使用);2.9 Prepare 10mg/ml fresh EDC solution with d H 2 O (Note: keep the EDC powder dry to facilitate the use of EDC in the next step);
2.10 加入2.5μl 10mg/ml EDC的的新鲜EDC溶液分别到十一种微球中(25μg终浓度约为0.5μg/μl)涡旋混匀; 2.10 Add 2.5μl 10mg/ml The fresh EDC solution of EDC was vortexed into eleven kinds of microspheres (25 μg final concentration: about 0.5 μg/μl);
2.11 室温避光孵育30min; 2.11 Incubate at room temperature for 30 min in the dark;
2.12 用d H2O 配制第二份10mg/ml的EDC新鲜溶液(注意:EDC粉末如果潮解,则应丢弃,建议每一步偶联过程都使用新鲜的EDC粉末);2.12 Prepare a second 10mg/ml EDC fresh solution with d H 2 O (Note: EDC powder should be discarded if deliquescent, it is recommended to use fresh EDC powder for each step of the coupling process);
2.13 十一种微球中各加入2.5μl 10mg/ml的EDC新鲜溶液,涡旋混匀; 2.13 Add 0.1 μl of 10 mg/ml EDC fresh solution to each of the eleven microspheres, and vortex and mix;
2.14 室温避光孵育30min; 2.14 Incubate at room temperature for 30 min in the dark;
2.15 十一种偶联微球中各加入1 ml 0.02% Tween-20; 2.15 Add 1 ml of 0.02% Tween-20 to each of the eleven coupled microspheres;
2.16 10,000g ,离心,1-2min; 2.16 10,000g, centrifuged, 1-2min;
2.17 移除上清,分别用1 ml 0.1%SDS重悬十一种偶联微球,振荡混匀; 2.17 Remove the supernatant, resuspend eleven coupled microspheres with 1 ml of 0.1% SDS, and mix by shaking;
2.18 10,000g ,离心,1-2min; 2.18 10,000g, centrifuged, 1-2min;
2.19 移除上清,分别加入100μl TE,pH8.0,涡旋混合20s,重悬微球; 2.19 Remove the supernatant, add 100 μl TE, pH 8.0, vortex for 20 s, and resuspend the microspheres;
2.20 用细胞计数器计数十一种偶联了寡核苷酸探针的微球; 2.20 Counting eleven microspheres coupled with an oligonucleotide probe using a cell counter;
a. 用d H2O 将 偶联微球以1:100稀释;a. The coupled microspheres were diluted 1:100 with d H 2 O;
b. 涡旋震荡充分混匀; b. Vortex and shake thoroughly;
c. 取10μl到细胞计数器上; c. Take 10μl onto the cell counter;
d. 数细胞计数器上4个角大格的微球总量; d. The total number of microspheres in the four corners of the number cell counter;
e. 微球/μl=(4大格微球总量)×2.5×100(稀释倍数)。 e. Microspheres/μl=(4 large microspheres total)×2.5×100 (dilution factor).
3. 微球混合液的配制 3. Preparation of microsphere mixture
将上述偶联了寡核苷酸探针的微球,如下列: 分别为PCA3 探针(1)微球11、 PCA3 探针(2)微球13 、PCA3 探针(3)微球15、 PCA3 探针(4)微球21、 PCA3 探针(5)微球25、 PCA3 探针(6)微球61、 PCA3 探针(7)微球62、 PCA3 探针(8)微球63、 PCA3 探针(9)微球64、 PCA3 探针(10)微球65、 β-actin探针微球66, 等比例混合,各种微球的终浓度为1500 个/μl,2-8℃避光保存。 The above microspheres coupled with an oligonucleotide probe are as follows: PCA3 probe (1) microsphere 11, PCA3 Probe (2) Microsphere 13, PCA3 Probe (3) Microsphere 15, PCA3 Probe (4) Microsphere 21, PCA3 Probe (5) Microsphere 25, PCA3 Probe (6) Microsphere 61, PCA3 Probe (7) microsphere 62, PCA3 probe (8) microsphere 63, PCA3 probe (9) microsphere 64, PCA3 probe (10) microsphere 65, β-actin probe microsphere 66, In a proportional mixture, the final concentration of each microsphere is 1500/μl, and it is stored at 2-8 °C in the dark.
二.样本的制备 two. Sample preparation
1-5 号临床样本为前列腺癌(PCa)患者的尿液,6-8号临床样本为正常人的尿液: The clinical sample No. 1-5 is the urine of patients with prostate cancer (PCa), and the clinical sample of No. 6-8 is the urine of normal people:
1. 对受试者采用传统前列腺按摩方法,即检查者作直肠指诊,自前列腺两侧向中央沟,自上而下纵向按摩2到3次,再按摩中央沟一次,将前列腺液挤入尿道。 1. The subject adopts the traditional prostate massage method, that is, the examiner performs a digital rectal examination, from the sides of the prostate to the central groove, massages from the top to the bottom 2 to 3 times, and then massages the central ditch once to squeeze the prostatic fluid into the urethra.
2. 嘱咐受试者立即排尿后收集初始段尿液20~30 ml,立即放入冰中冷却。于4℃ 3000 r /min离心10 min收集尿沉渣,加适量预冷D-Hanks液洗涤两次; 2. The subject immediately urinates and collects 20 to 30 ml of the initial urine, which is immediately placed in ice for cooling. At 4 ° C 3000 r /min was centrifuged for 10 min to collect urine sediment, and an appropriate amount of pre-cooled D-Hanks solution was washed twice;
3. 将尿沉渣收集于 RNase-free 的 离心管 中,立即加含酸性异硫氰酸胍的变性液(即RNAiso Reagent)500 μ l 混匀置一70℃保存。 3. Collect urinary sediment in RNase-free centrifuge tubes Immediately, 500 μl of a denaturing solution containing guanidinium isothiocyanate (ie, RNAiso Reagent) was added and stored at 70 ° C.
4. 从 一70℃ 取出已含有500 μ l RNAiso Reagent 的尿沉渣标本,待融解后离心。 4. Remove 500 μl RNAiso Reagent from a 70 ° C The urine sediment specimen is centrifuged after being melted.
5. 加入1/5 RNAiso Reagent 体积量的氯仿,振荡混匀,室温静置5分钟后, 12000r /min 4 ℃ 离心15min。 5. Add 1/5 RNAiso Reagent volume of chloroform, mix by shaking, and let stand for 5 minutes at room temperature. Centrifuge for 15 min at 12000 r /min 4 °C.
6. 小心将上层水相移入RNase-free的 离心 管中,然后加入与上清等体积的异丙醇,颠倒混匀,室温静置5分钟后,12000 r/min离心lOmin。 6. Carefully move the upper aqueous phase into the RNase-free centrifuge In the tube, an equal volume of isopropanol was added to the supernatant, and the mixture was inverted. The mixture was allowed to stand at room temperature for 5 minutes, and then centrifuged at 12000 r/min for 10 minutes.
7. 弃上清液,用lml 75%预冷乙醇洗涤沉淀2次,离心彻底去除乙醇。 7. Discard the supernatant and wash the pellet twice with 1 ml of 75% pre-chilled ethanol. Centrifuge thoroughly to remove the ethanol.
8.用50ul(RNase-free)dH2O溶解RNA样品,55-60℃,5-10min;测OD值定量RNA浓度 。 8. Dissolve the RNA sample with 50 ul (RNase-free) dH2O at 55-60 ° C for 5-10 min; measure the OD value to quantify the RNA concentration.
三.多重RT-PCR three. Multiple RT-PCR
按照如下方法对上述的1-8号样本的mRNA进行多重逆转录PCR扩增: Multiple reverse transcription PCR amplification of mRNAs from samples 1-8 above was performed as follows:
1.cDNA 第一链的合成 1. Synthesis of cDNA first strand
① 取一 RNase-free 的 离心管,置于冰上,建立下列反应体系; 1 Take an RNase-free centrifuge tube and place on ice to establish the following reaction system;
Total RNA 5 ~10µg/3µl Total RNA 5 ~ 10μg / 3μl
Oligo(dT)18 Primer(0.5µg/µl) 1µl Oligo(dT)18 Primer (0.5μg/μl) 1μl
RNase-free water forward to 12µl RNase-free water forward to 12μl
轻轻混匀反应液,用冷冻离心机稍微离心收集管壁上的反应液到管底; Mix the reaction solution gently, and centrifuge the centrifuge to collect the reaction solution on the tube wall to the bottom of the tube;
② 离心管于70℃温育5分钟,之后迅速取出置于冰中冷却,用冷冻离心机稍微 2 Centrifuge the tube at 70 ° C for 5 minutes, then quickly remove it and place it in ice for cooling. Use a refrigerated centrifuge slightly.
离心收集管壁上的反应液到管底; Centrifuge the reaction liquid on the wall of the tube to the bottom of the tube;
③将离心管放置于冰上,按顺序加入以下反应液; 3 Place the centrifuge tube on ice and add the following reaction solutions in order;
5×reaction buffer 4µl 5×reaction buffer 4μl
RNase Inhibitor(20U/µl) 1µl RNase Inhibitor (20U/μl) 1μl
10mM dNTPs Mix 2µl 10mM dNTPs Mix 2μl
轻轻混匀反应液,用冷冻离心机稍微离心收集管壁上的反应液到管底; Mix the reaction solution gently, and centrifuge the centrifuge to collect the reaction solution on the tube wall to the bottom of the tube;
④ 离心管于37℃温育5分钟; 4 centrifuge tube at 37 ° C for 5 minutes;
⑤ 加入1µl RevertAidTM Reverse Transcriptase(200U/µl),终体积为20µl; 5 Add 1μl RevertAidTM Reverse Transcriptase (200 U / μl), the final volume is 20 μl;
⑥ 离心管于42℃反应60分钟; 6 centrifuge tube at 42 ° C for 60 minutes;
⑦ 离心管于70℃加热10分钟终止反应,之后迅速取出置于冰中冷却; 7 The tube is heated at 70 ° C for 10 minutes to terminate the reaction, then quickly taken out and placed in ice to cool;
2. 多重PCR 2. Multiplex PCR
2.1 按照如下序列合成引物: 2.1 Synthesize primers according to the following sequence:
针对PCA3 基因 的mRNA : mRNA for the PCA3 gene:
引物组(1)上游 5 ' -biotin AAGAAATAGCAAGTGCCGAGAAG -3 ' ,如 SEQ ID NO.9 所示; 下游 5 ' -GTGTGGCCTCAGATGGTAAAGTC-3' ,如 SEQ ID NO.10 所示; Primer set (1) upstream 5 ' -biotin AAGAAATAGCAAGTGCCGAGAAG -3 ' , as shown in SEQ ID NO. 9; downstream 5 '-GTGTGGCCTCAGATGGTAAAGTC-3', as shown in SEQ ID NO.
引物组(2)上游 5 ' -biotin TGGTGGGAAGGACCTGATGATAC-3',如 SEQ ID NO.11 所示; 下游 5 ' - TCTCCCAGGGATCTCTGTGCTT-3' ,如 SEQ ID NO.12 所示; Primer set (2) upstream 5 '-biotin TGGTGGGAAGGACCTGATGATAC-3', such as SEQ ID NO. 11; downstream 5'-TCTCCCAGGGATCTCTGTGCTT-3', as shown in SEQ ID NO.
引物组(3)上游 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' ,如 SEQ ID NO.13 所示; 下游 5 ' - TAAAGGGGCTGGAAATGTGC-3' ,如 SEQ ID NO.14 所示; Primer set (3) upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5'-TAAAGGGGCTGGAAATGTGC-3', as shown in SEQ ID NO.
引物组(4)上游 5 ' -biotin AGCCGAGGGAGACCAGGAAG -3 ' ,如 SEQ ID NO.15 所示; 下游 5 ' - CAGCAGATGTGTGGCCTCAGAT-3' ,如 SEQ ID NO.16 所示; Primer set (4) upstream 5 '-biotin AGCCGAGGGAGACCAGGAAG -3 ' , as SEQ ID NO. 15; downstream 5 ' - CAGCAGATGTGTGGCCTCAGAT-3' as shown in SEQ ID NO.
引物组(5)上游 5 ' -biotin CCGAGGGAGACCAGGAAGAT -3 ' ,如 SEQ ID NO.17 所示; 下游 5 ' - CACAGGGCGAGGCTCATC-3' ,如 SEQ ID NO.18 所示; Primer set (5) upstream 5 '-biotin CCGAGGGAGACCAGGAAGAT -3 ' , as SEQ ID NO. 17; downstream 5 ' - CACAGGGCGAGGCTCATC-3' as shown in SEQ ID NO.
引物组(6)上游 5 ' -biotin AGAAATAGCAAGTGCCGAGAAGC -3 ' ,如 SEQ ID NO.19 所示; 下游 5 ' - CACAGGGCGAGGCTCATC-3' ,如 SEQ ID NO.20 所示; Primer set (6) upstream 5 ' -biotin AGAAATAGCAAGTGCCGAGAAGC -3 ' , as shown in SEQ ID NO. 19; downstream 5'-CACAGGGCGAGGCTCATC-3', as shown in SEQ ID NO.
引物组(7)上游 5 ' -biotin TATCCACACACACAGGAAGCAC -3 ' ,如 SEQ ID NO.21 所示; 下游 5 ' - CCTCTCATTGGTAATGCTCACTTT-3' ,如 SEQ ID NO.22 所示; Primer set (7) upstream 5 ' -biotin TATCCACACACACAGGAAGCAC -3 ' , as shown in SEQ ID NO. 21; downstream 5 ' - CCTCTCATTGGTAATGCTCACTTT-3', as SEQ ID NO. Shown
引物组(8)上游 5 ' -biotin AAGGCTGCTGACTTTACCATCTG -3 ' ,如 SEQ ID NO.23 所示; 下游 5 ' - TCTAATGTCCTTCCCTCACAAGC-3' ,如 SEQ ID NO.24 所示; Primer set (8) upstream 5 ' -biotin AAGGCTGCTGACTTTACCATCTG -3 ' , as shown in SEQ ID NO. 23; downstream 5 ' - TCTAATGTCCTTCCCTCACAAGC-3', as shown in SEQ ID NO.
引物组(9)上游 5 ' -biotin CGCTTGTGAGGGAAGGACATTAG -3 ' ,如 SEQ ID NO.25 所示; 下游 5 ' - GTGAAGCCATCAAGATTTTCTCGTC-3' ,如 SEQ ID NO.26 所示; Primer set (9) upstream 5 ' -biotin CGCTTGTGAGGGAAGGACATTAG -3 ' , as shown in SEQ ID NO. 25; downstream 5 ' - GTGAAGCCATCAAGATTTTCTCGTC-3', as SEQ ID NO. Shown
引物组(10)上游 5 ' -biotin CAGCAGGACCCAACGCAT -3 ' ,如 SEQ ID NO.27 所示; 下游 5 ' - GAGAGAGGATTGGTAAGCGATGTG-3' ,如 SEQ ID NO.28 所示; Primer set (10) upstream 5 '-biotin CAGCAGGACCCAACGCAT -3 ' , as SEQ ID NO. 27; downstream 5'-GAGAGAGGATTGGTAAGCGATGTG-3' as shown in SEQ ID NO.
以上针对PCA3所设计的引物组 (1)、(2)、(3)、(4)、(5)、(6)、(7)、(8)、(9)、(10)与上述设计的 PCA3 探针 (1)、(2)、(3)、(4)、(5)、(6)、(7)、(8)、(9)、(10)一一对应,分别对应组合为 PCA3引物/探针组1、2、3、4、5、6、7、8、9、 10(见表1和表2); The above primer set designed for PCA3 (1), (2), (3), (4), (5), (6), (7), (8), (9), (10) and PCA3 probes designed as described above (1), (2), (3), (4), (5), (6), (7), (8), (9), (10) one-to-one correspondence, respectively corresponding to PCA3 primer/probe set 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 (see Tables 1 and 2);
β-actin基因 : 上游引物 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG-3',如 SEQ ID NO.39 所示; 下游引物 5'-GCTGGGGTGTTGAAGGTCTC-3' ,如 SEQ ID NO.40 所示; --actin gene : upstream primer 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG-3', as shown in SEQ ID NO. 39; downstream primer 5'-GCTGGGGTGTTGAAGGTCTC-3' , as shown in SEQ ID NO. 40;
2.2 多重PCR反应: 2.2 Multiplex PCR reactions:
采用的是QIAGEN公司的Multiplex PCR试剂盒,体系如下 QIAGEN's Multiplex PCR kit is used, the system is as follows
Template cDNA 10µl Template cDNA 10μl
2 ×QIAGEN Multiplex PCR Master Mix 25µl 2 ×QIAGEN Multiplex PCR Master Mix 25μl
10 ×Primer mix 5µl 10 ×Primer mix 5μl
RNase-free water 10µl RNase-free water 10μl
终体积为50 µl Final volume is 50 μl
(2×QIAGEN Multiplex PCR Master Mix中含热启动TaqDNA酶、MgCl2和 dNTP Mix。)(The 2×QIAGEN Multiplex PCR Master Mix contains hot-start Taq DNA, MgCl 2 and dNTP Mix.)
PCR 扩增程序:95℃ 15min;94℃30 s,55℃ 90s,72℃ 90s,35个循环; 72℃10 min;4℃保温。 PCR amplification procedure: 95 ° C for 15 min; 94 ° C for 30 s, 55 ° C for 90 s, 72 ° C for 90 s, 35 cycles; 72 ° C 10 min; 4 ° C insulation.
四.寡核苷酸探针和PCR产物的杂交 four. Hybridization of oligonucleotide probes and PCR products
1 .选取步骤一中配制的寡核苷酸探针微球混合物; 1 . Selecting the oligonucleotide probe microsphere mixture prepared in the first step;
2 .涡旋震荡20s,混匀微球; 2 . Vortex for 20s, mix the microspheres;
3 .制备微球工作液,用1.5×TMAC杂交溶液稀释偶联微球至浓度为150个微球/μl。(注:每个反应需要33μl的微球工作液); 3 . The microsphere working solution was prepared, and the coupled microspheres were diluted with a 1.5×TMAC hybridization solution to a concentration of 150 microspheres/μl. (Note: 33μl of microsphere working solution is required for each reaction);
4 .涡旋震荡20s,混匀微球工作液; 4 . Vortex for 20s, mix the microsphere working solution;
5 .向样本孔、阳性对照孔、阴性对照孔内分别加入33μl微球工作液; 5 . Add 33 μl of microsphere working solution to the sample well, positive control well and negative control well respectively;
6. 向每个样品孔内分别加入1-8号样本的PCR扩增产物和TE溶液(pH为8.0),总体积为17μl; 6. Add PCR amplification product of sample No. 1-8 and TE solution (pH 8.0) to each sample well, the total volume is 17 μl;
7. 用排枪上下吸打,温柔混匀反应液; 7. Dip up and down with a lance and gently mix the reaction solution;
8. 盖上反应盖避免蒸发,在95-100℃下孵育1-3min,使样品中的寡核苷酸去掉二级结构; 8. Cover the reaction cover to avoid evaporation, incubate at 95-100 ° C for 1-3 min, so that the oligonucleotides in the sample remove the secondary structure;
9. 在杂交温度下孵育反应板15min; 9. Incubate the reaction plate at the hybridization temperature for 15 min;
10. 制备新鲜的检测混合液,用1×TMAC杂交溶液稀释链霉亲和素藻红蛋白溶液至10μg/ml(每个反应需要25μl的检测混合液); 10. Prepare a fresh test mixture, and dilute the streptavidin phycoerythrin solution to 10 μg/ml with 1×TMAC hybridization solution (25 μl of detection mixture per reaction);
11. 向每孔加入25μl的检测混合液,用排枪上下吸打,温柔混匀; 11. Add 25 μl of the test mixture to each well, pipe up and down with a lance, and mix gently;
12. 在杂交温度下孵育5min; 12. Incubate for 5 min at the hybridization temperature;
上述步骤可以通过PCR仪按以下方案编程将其合并: The above steps can be combined by the PCR program according to the following scheme:
95 ℃ ,1-3min; 95 ° C, 1-3 min;
杂交温度,forever; Hybridization temperature
13. 在液相芯片仪( LiquiChip 200 或 Luminex 200 )上,保持杂交温度,对各反应孔进行检测分析,测定荧光MFI值( 平均荧光强度 )。 13. In the liquid chip device (LiquiChip 200 or Luminex 200 On the above, the hybridization temperature was maintained, and each reaction well was subjected to detection and analysis, and the fluorescence MFI value (average fluorescence intensity) was measured.
五.检测结果及分析 Fives. Test results and analysis
检测结果(荧光 MFI 值)如表 1 所示: The test results (fluorescence MFI values) are shown in Table 1:
表1 Table 1
内参基因--actin
Reference gene
结果分析如表2所示: The results are analyzed as shown in Table 2:
表2 Table 2
不同的 引物/探针组 检测 1-5 号 前列腺癌(PCa) 患者尿液中的 PCA3 均为 阳性。 Different primers/probe groups detect PCA3 in the urine of patients with 1-5 prostate cancer (PCa) Positive.
不同的 引物/探针组 检测 6-8 号 正常人 尿液中的 PCA3 均为 阴性。 Different primers/probe groups were tested. PCA3 was negative in urine of 6-8 normal subjects.
同时,将患者呈现的荧光MFI值与内参β-actin基因的荧光MFI值相比,可得出PCA3基因的表达状况。 At the same time, the expression of the PCA3 gene can be obtained by comparing the fluorescence MFI value exhibited by the patient with the fluorescent MFI value of the β-actin gene of the internal reference.
实施例 2 : 不同引物及探针组合检测尿液中PSA基因的液相芯片方法 Example 2: Liquid phase chip method for detecting PSA gene in urine by using different primers and probe combinations
具体的检测方法包括如下步骤: The specific detection method includes the following steps:
一.检测PSA基因的微球混合液的制备 One. Preparation of microsphere mixture for detecting PSA gene
1. 按照以下序列合成寡核苷酸探针: 1. Synthesize oligonucleotide probes according to the following sequence:
针对PSA 基因 的mRNA : mRNA for the PSA gene:
探针A: 5 ' - AminolinkerC12 CAGAATCACCCGAGCAGGTG -3 ' , 如 SEQ ID NO.6 所示; Probe A: 5 ' - AminolinkerC12 CAGAATCACCCGAGCAGGTG -3 ' , as shown in SEQ ID NO.
探针B: 5 ' - AminolinkerC12 GGGGTCAAGAACTCCTCTGG -3 ' , 如 SEQ ID NO.7 所示; Probe B: 5 ' - AminolinkerC12 GGGGTCAAGAACTCCTCTGG -3 ' , as shown in SEQ ID NO.
探针C: 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , 如 SEQ ID NO.8 所示;Probe C: 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , as shown in SEQ ID NO.
探针D:同PSA探针A, 如 SEQ ID NO.6 所示; Probe D: same as PSA probe A, as shown in SEQ ID NO.
探针E:同PSA探针B, 如 SEQ ID NO.7 所示; Probe E: same as PSA probe B, as shown in SEQ ID NO.
β-actin基因: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' , 如 SEQ ID NO.41 所示; --actin gene: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' as shown in SEQ ID NO. 41;
2 .将含有氨基修饰的寡核苷酸探针分别与编号为11、13、15、21、25、66号的6种羧基微球偶联 2 . Coupling an amino-modified oligonucleotide probe to six carboxyl microspheres numbered 11, 13, 15, 21, 25, and 66, respectively
2.1 取出一小份-20℃保存的新鲜干粉状EDC平衡到室温; 2.1 Take out a small portion of fresh dry powdered EDC stored at -20 ° C to equilibrate to room temperature;
2.2 用d H2O 分别 溶解PSA、β-actin的寡核苷酸探针,浓度为1mM(1nmol/μl);2.2 Dissolve the oligonucleotide probes of PSA and β-actin with d H 2 O at a concentration of 1 mM (1 nmol/μl);
2.3 分别全速涡旋编号为 11 、 13 、 15 、 21 、 25 、 66 号的 6 种羧基微球储存悬液至少3min,产生均一的微球悬液; 2.3 6 of the full speed vortex numbers 11 , 13 , 15 , 21 , 25 , 66 The carboxy microspheres are stored in suspension for at least 3 minutes to produce a uniform suspension of microspheres;
2.4-2.20 同实施例1中的2.4-2.20,只是将11管相应减少到6管,其他不变。 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 6 tubes, and the others are unchanged.
3. 微球混合液的配制 3. Preparation of microsphere mixture
将上述偶联了寡核苷酸探针的微球,如下列: 分别为PSA 探针A微球11、 PSA 探针B微球13 、PSA 探针C微球15、 PSA 探针D微球21、 PSA 探针E微球25、 β-actin探针微球66, 等比例混合,各种微球的终浓度为1500 个/μl,2-8℃避光保存。 The above microspheres coupled with an oligonucleotide probe are as follows: PSA probe A microsphere 11, PSA probe B microsphere 13 , PSA probe C microsphere 15, PSA probe D microsphere 21, PSA probe E microsphere 25, β-actin probe microsphere 66, mixed in equal proportion, the final concentration of various microspheres is 1500 /μl, 2-8 °C protected from light.
二.样本的制备 two. Sample preparation
1-5 号临床样本为前列腺癌(PCa)患者的尿液, 6-8号临床样本为正常人的尿液,制备方法同实施例1中样本的制备方法。 Clinical sample No. 1-5 is the urine of patients with prostate cancer (PCa). The clinical sample No. 6-8 is the urine of a normal person, and the preparation method is the same as the preparation method of the sample in Example 1.
三.多重RT-PCR three. Multiple RT-PCR
按照如下方法对上述的1-8号样本的mRNA进行多重逆转录PCR扩增: Multiple reverse transcription PCR amplification of mRNAs from samples 1-8 above was performed as follows:
1.cDNA 第一链的合成方法同实施例1中cDNA第一链的合成方法。 1. The method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
2. 多重PCR 2. Multiplex PCR
2.1 按照如下序列合成引物: 2.1 Synthesize primers according to the following sequence:
针对PSA 基因 的mRNA: mRNA for the PSA gene:
引物组A:上游 5 ' -biotin TTGACCCCAAAGAAACTTCAGTGT -3 ' ,如 SEQ ID NO.29 所示; 下游 5 ' - TGCCCCATGACGTGATACCT-3' ,如 SEQ ID NO.30 所示; Primer set A: upstream 5 ' -biotin TTGACCCCAAAGAAACTTCAGTGT -3 ' , as shown in SEQ ID NO. 29; downstream 5 ' - TGCCCCATGACGTGATACCT-3', as shown in SEQ ID NO.
引物组B:上游 5 ' -biotin TCCCACACCCGCTCTACGAT-3',如 SEQ ID NO.31 所示; 下游 5 ' - CGTCCAGCACACAGCATGAACT-3' ,如 SEQ ID NO.32 所示 Primer set B: upstream 5 ' -biotin TCCCACACCCGCTCTACGAT-3', as SEQ ID NO.31; downstream 5 ' - CGTCCAGCACACAGCATGAACT-3' as shown in SEQ ID NO.
引物组C:上游 5 ' -biotin TGCACCCCTCATCCTGTCTC -3 ' ,如 SEQ ID NO.33 所示; 下游 5 ' - GCTGTGGCTGACCTGAAATACC-3' ,如 SEQ ID NO.34 所示 Primer group C: upstream 5 '-biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
引物组D:上游 5 ' -biotin GGCAGCATTGAACCAGAGGAGT -3 ' ,如 SEQ ID NO.35 所示; 下游 5 ' - CGATGGTGTCCTTGATCCACTT-3' ,如 SEQ ID NO.36 所示 Primer set D: upstream 5 ' -biotin GGCAGCATTGAACCAGAGGAGT -3 ' , as shown in SEQ ID NO. 35; downstream 5 ' - CGATGGTGTCCTTGATCCACTT-3', as shown in SEQ ID NO.
引物组E:上游 5 ' -biotin TCCTCAGGCCAGGTGATGACT -3 ' ,如 SEQ ID NO.37 所示; 下游 5 ' - CGTCCAGCACACAGCATGAACT-3' ,如 SEQ ID NO.38 所示 Primer set E: upstream 5 ' -biotin TCCTCAGGCCAGGTGATGACT -3 ' , as SEQ ID NO. 37; downstream 5 ' - CGTCCAGCACACAGCATGAACT-3' as shown in SEQ ID NO.
以上针对PSA所设计的引物组A 、B、C、D、E与上述设计的 PSA 探针A 、B、C、D、E一一对应,分别对应组合为 PSA 引物/探针组1、2、3、4、5(见表3和表4) ; The above primer sets A, B, C, D, E designed for PSA and the PSA probe A designed above , B, C, D, E correspond one-to-one, respectively corresponding to PSA primer / probe group 1, 2, 3, 4, 5 (see Table 3 and Table 4);
β-actin基因 : 上游 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG-3',如 SEQ ID NO.39 所示; 下游 5'-GCTGGGGTGTTGAAGGTCTC-3' ,如 SEQ ID NO.40 所示; --actin gene : upstream 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG-3', as shown in SEQ ID NO. 39; downstream 5'-GCTGGGGTGTTGAAGGTCTC-3', such as SEQ ID NO. 40;
2.2 多重PCR反应: 2.2 Multiplex PCR reactions:
方法同实施例 1 中( 三、2.2 )多重PCR反应方法。 The method was the same as in Example 1 (III, 2.2) multiplex PCR reaction method.
四.寡核苷酸探针和PCR产物的杂交 four. Hybridization of oligonucleotide probes and PCR products
方法同实施例 1 中( 四)寡核苷酸探针和PCR产物的杂交方法。 The method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
五.检测结果及分析 Fives. Test results and analysis
检测结果(荧光 MFI 值)如表 3 所示: The test results (fluorescence MFI values) are shown in Table 3:
表3 table 3
结果分析如表4所示: The results are analyzed as shown in Table 4:
表4 Table 4
不同的 引物/探针组 检测 1-5 号 前列腺癌(PCa) 患者尿液中的 PSA 均为 阳性。 Different primers/probe groups detect PSA in urine of patients with 1-5 prostate cancer (PCa) Positive.
不同的 引物/探针组 检测 6-8 号 正常人 尿液中的 PSA 均为 阴性。 Different primers/probe sets were detected. Normally, 6-8 normal people had negative PSA in urine.
同时,将患者呈现的荧光MFI值与内参β-actin基因的荧光MFI值相比,可得出PSA基因的表达状况。 At the same time, the expression of the PSA gene can be obtained by comparing the fluorescence MFI value exhibited by the patient with the fluorescent MFI value of the β-actin gene of the internal reference.
实施例 3 : 联合检测尿液中PCA3、PSA及PCA3/PSA比值的 液相芯片方法 Example 3: Liquid phase chip method for combined detection of PCA3, PSA and PCA3/PSA ratios in urine
具体的检测方法包括如下步骤: The specific detection method includes the following steps:
一.检测PSA基因的微球混合液的制备 One. Preparation of microsphere mixture for detecting PSA gene
1. 按照以下序列合成寡核苷酸探针: 1. Synthesize oligonucleotide probes according to the following sequence:
PCA3 : 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , 如 SEQ ID NO.1 所示; PCA3 : 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , as shown in SEQ ID NO.
PSA : 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , 如 SEQ ID NO.8 所示; PSA : 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , as shown in SEQ ID NO.
β-actin基因: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' , 如 SEQ ID NO.41 所示; --actin gene: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' as shown in SEQ ID NO. 41;
2 .将含有氨基修饰的寡核苷酸探针分别与编号为11、13、66号的3种羧基微球偶联 2 . Coupling an amino-modified oligonucleotide probe to three carboxy microspheres numbered 11, 13, and 66, respectively
2.1 取出一小份-20℃保存的新鲜干粉状EDC平衡到室温; 2.1 Take out a small portion of fresh dry powdered EDC stored at -20 ° C to equilibrate to room temperature;
2.2用dH 2O分别溶解PCA3、PSA、β-actin的寡核苷酸探针,浓度为1mM(1nmol/μl); 2.2 with dH 20O separately dissolved PCA3, PSA, β-actin oligonucleotide probe, the concentration was 1 mM (1nmol / μl);
2.3 分别全速涡旋编号为 11 、 13 、 66 号的 3 种羧基微球储存悬液至少3min,产生均一的微球悬液; 2.3 Full-speed vortex numbers 11 , 13 , 66 3 The carboxy microspheres are stored in suspension for at least 3 minutes to produce a uniform suspension of microspheres;
2.4-2.20 同实施例1中的2.4-2.20,只是将11管相应减少到3管,其他不变。 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 3 tubes, and the others are unchanged.
3. 微球混合液的配制 3. Preparation of microsphere mixture
将上述偶联了寡核苷酸探针的微球,如下列: 分别为PCA3 探针微球11、 PSA 探针微球13 、β-actin探针微球66, 等比例混合,各种微球的终浓度为1500 个/μl,2-8℃避光保存。 The above microspheres coupled with an oligonucleotide probe are as follows: PCA3 probe microsphere 11, PSA probe microsphere 13, respectively , β-actin probe microspheres 66, mixed in equal proportions, the final concentration of various microspheres is 1500 / μl, 2-8 ° C protected from light.
二.样本的制备 two. Sample preparation
1-10 号患者的临床样本为前列腺癌(PCa)患者的尿液,11-20号患者的临床样本为良性前列腺增生(BPH)患者的尿液,制备方法同实施例1中样本的制备方法。 1-10 The clinical sample of the patient is the urine of patients with prostate cancer (PCa), and the clinical sample of patients with type 11-20 is the urine of patients with benign prostatic hyperplasia (BPH). The preparation method is the same as the preparation method of the sample in Example 1.
三.多重RT-PCR three. Multiple RT-PCR
按照如下方法对上述的1-20号样本的mRNA进行多重逆转录PCR扩增: Multiple reverse RT-PCR amplification of mRNA from samples 1-20 above was performed as follows:
1.cDNA 第一链的合成方法同实施例1中cDNA第一链的合成方法。 1. The method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
2. 多重PCR 2. Multiplex PCR
2.1 按照如下序列合成引物: 2.1 Synthesize primers according to the following sequence:
PCA3 :上游 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' ,如 SEQ ID NO.13 所示; 下游 5 ' - TAAAGGGGCTGGAAATGTGC-3' ,如 SEQ ID NO.14 所示 PCA3: upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5 ' - TAAAGGGGCTGGAAATGTGC-3' , as shown in SEQ ID NO.
PSA : 上游 5 ' -biotin TGCACCCCTCATCCTGTCTC -3 ' ,如 SEQ ID NO.33 所示; 下游 5 ' - GCTGTGGCTGACCTGAAATACC-3' ,如 SEQ ID NO.34 所示 PSA: upstream 5 ' -biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
β-actin基因 : 上游 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG-3',如 SEQ ID NO.39 所示; 下游 5'-GCTGGGGTGTTGAAGGTCTC-3' ,如 SEQ ID NO.40 所示; --actin gene : upstream 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG-3', as shown in SEQ ID NO. 39; downstream 5'-GCTGGGGTGTTGAAGGTCTC-3', such as SEQ ID NO. 40;
2.2 多重PCR反应: 2.2 Multiplex PCR reactions:
方法同实施例 1 中( 三、2.2 )多重PCR反应方法。 The method was the same as in Example 1 (III, 2.2) multiplex PCR reaction method.
四.寡核苷酸探针和PCR产物的杂交 four. Hybridization of oligonucleotide probes and PCR products
方法同实施例 1 中( 四)寡核苷酸探针和PCR产物的杂交方法。 The method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
五.检测结果及分析 Fives. Test results and analysis
检测结果(荧光 MFI 值)如表 5 所示: The test results (fluorescence MFI values) are shown in Table 5:
表 5 table 5
结果分析如表6所示: The results are analyzed as shown in Table 6:
表6 Table 6
PCA3/PSA 比值的平均值及分析如表7所示: The average and analysis of the PCA3/PSA ratios are shown in Table 7:
表7 Table 7
1-10 号 前列腺癌(PCa)组 患者尿液中的 PCA3 和 PSA 均为阳性; 11-20 号 良性前列腺增生(BPH)组 患者 尿液中 的 PCA3 为阴性,PSA为阳性;两组患者PCA3/PSA平均值相差21倍。此方法很好地把前列腺癌患者与良性前列腺增生患者区分开来。 Patients with prostate cancer (PCa) 1-10 were positive for PCA3 and PSA in urine; 11-20 PCA3 in the urine of patients with benign prostatic hyperplasia (BPH) Negative, PSA was positive; the mean PCA3/PSA difference between the two groups was 21 times. This method is a good way to distinguish patients with prostate cancer from patients with benign prostatic hyperplasia.
同时,将 患者呈现 阳性的荧光MFI值与内参β-actin基因的荧光MFI值相比,可得出PCA3基因 和 PSA 基因的表达状况。 At the same time, the patient will be presented The positive fluorescent MFI value is compared with the fluorescent MFI value of the internal reference β-actin gene, and the expression status of PCA3 gene and PSA gene can be obtained.
实施例 4 : 不同引物及探针组合检测血液中PCA3基因的液相芯片法 Example 4: Liquid phase chip method for detecting PCA3 gene in blood by different primers and probe combinations
具体的检测方法包括如下步骤: The specific detection method includes the following steps:
一.检测PCA3基因的微球混合液的制备 One. Preparation of microsphere mixture for detecting PCA3 gene
1. 按照以下序列合成寡核苷酸探针: 1. Synthesize oligonucleotide probes according to the following sequence:
针对PCA3基因 : For the PCA3 gene:
探针(1) 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , 如 SEQ ID NO.1 所示; Probe (1) 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , as shown in SEQ ID NO.
探针(3)、(5)同探针(1), 如 SEQ ID NO.1 所示; Probe (3), (5) is the same as probe (1), as shown in SEQ ID NO.
β-actin基因: 5 ' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG-3',如 SEQ ID NO.41 所示; --actin gene: 5 ' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG-3', as shown in SEQ ID NO.
2 .将含有氨基修饰的寡核苷酸探针分别与编号为 11 、 13 、 15 、 66 号的 4 种羧基微球偶联 2 . Oligonucleotide probes containing amino modifications are assigned to numbers 4, 13, 15, and 66, respectively. Carboxyl microsphere coupling
2.1 取出一小份-20℃保存的新鲜干粉状EDC平衡到室温; 2.1 Take out a small portion of fresh dry powdered EDC stored at -20 ° C to equilibrate to room temperature;
2.2 用d H2O 分别 溶解PCA3、β-actin的寡核苷酸探针,浓度为1mM(1nmol/μl);2.2 Dissolving the oligonucleotide probes of PCA3 and β-actin with d H 2 O at a concentration of 1 mM (1 nmol/μl);
2.3 分别全速涡旋编号为11、13、15 、66号的4种羧基微球储存悬液至少3min,产生均一的微球悬液; 2.3 The full speed vortex numbers are 11, 13, 15 respectively. , the four kinds of carboxyl microspheres of 66 are stored in suspension for at least 3 minutes to produce a uniform suspension of microspheres;
2.4-2.20 同实施例1中的2.4-2.20,只是将11管相应减少到4管,其他不变。 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 4 tubes, and the others are unchanged.
3. 微球混合液的配制 3. Preparation of microsphere mixture
将上述偶联了寡核苷酸探针的微球,如下列: 分别为PCA3(1) 探针微球11、 PCA3 (3) 探针微球13 、PCA3(5) 探针微球15、 β-actin探针微球66, 等比例混合,各种微球的终浓度为1500 个/μl,2-8℃避光保存。 The above microspheres coupled with an oligonucleotide probe are as follows: PCA3(1) probe microsphere 11, PCA3 (3) The probe microspheres 13, PCA3 (5) probe microspheres 15, and β-actin probe microspheres 66 were mixed in equal proportions, and the final concentration of each microsphere was 1500 / μl, and stored at 2-8 ° C in the dark.
二.样本的制备 two. Sample preparation
1-5 号临床样本为前列腺癌(PCa)患者的静脉血,6-8号临床样本为正常人的静脉血, 分别按照下面的步骤提取RNA: The clinical sample of No. 1-5 is venous blood of patients with prostate cancer (PCa), and the clinical sample of No. 6-8 is venous blood of normal people. Extract RNA by following the steps below:
1. 淋巴细胞提取:取受试者早餐前的抗凝静脉血5 ml ,混匀后3000 r/min 离心, 10 min , 4 ℃,取血球层上浅黄色层即为淋巴细胞; 1. Lymphocyte extraction: Take 5 ml of anticoagulated venous blood before breakfast, and centrifuge at 3000 r/min for 10 minutes. Min , 4 °C, taking the light yellow layer on the blood cell layer is the lymphocyte;
2 .取1个离心管(经DEPC 水处理) 加入淋巴细胞液150 μl . 然后加1 ml TRIZOL ,室温放置5min,使其充分裂解; 2 . Take 1 centrifuge tube (treated with DEPC water) and add 150 μl of lymphocyte solution. Then add 1 ml. TRIZOL, placed at room temperature for 5 min, allowing it to fully lyse;
3. 12 ,000rpm 离心5min,取上清; 3. Centrifuge at 12,000 rpm for 5 min, and take the supernatant;
4. 每1 ml Trizol 中 加入200 μl 氯仿,剧振荡混匀后室温放置15min; 4. Add 200 μl per 1 ml Trizol Chloroform, mixed with shaking and allowed to stand at room temperature for 15 min;
5. 4℃ 12 ,000g 离心15min; 5. Centrifuge at 12 °C for 12 min at 4 °C;
6. 吸取上层水相,至另一离心管中; 6. Pipette the upper aqueous phase into another centrifuge tube;
7. 每1 ml Trizol 中 加入500 μl 异丙醇混匀,室温放置5-10min; 7. Add 500 μl of isopropanol per 1 ml of Trizol and mix at room temperature for 5-10 min;
8. 4℃ 12 ,000g 离心10min,弃上清,RNA沉于管底; 8. Centrifuge at 4 °C 12,000g for 10min, discard the supernatant, and sink the RNA at the bottom of the tube;
9. 按每1 ml Trizol 中 加入1 ml 75% 乙醇,温和振荡离心管,悬浮沉淀; 9. Add 1 ml 75% per 1 ml Trizol Ethanol, gently shake the centrifuge tube, and suspend the precipitate;
10. 4 ℃ 8 ,000g 离心5min,尽量弃上清; 10. Centrifuge at 8 °C 8 ,000g for 5min, discard the supernatant as much as possible;
11. 室温晾干或真空干燥5-10min; 11. Dry at room temperature or vacuum dry for 5-10min;
12. 用50 ul RNase-free dH2O 溶解RNA样品,55-60℃,5-10min;12. Dissolve the RNA sample with 50 ul of RNase-free dH 2 O, 55-60 ° C, 5-10 min;
13. 测OD值定量RNA浓度。 13. Measure the OD value to quantify the RNA concentration.
三.多重RT-PCR three. Multiple RT-PCR
按照如下方法对上述的1-8号样本的mRNA进行多重逆转录PCR扩增: Multiple reverse transcription PCR amplification of mRNAs from samples 1-8 above was performed as follows:
1.cDNA 第一链的合成方法同实施例1中cDNA第一链的合成方法。 1. The method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
2. 多重PCR 2. Multiplex PCR
2.1 按照如下序列合成引物: 2.1 Synthesize primers according to the following sequence:
针对PCA3基因 : For the PCA3 gene:
引物(1)上游 5 ' -biotin AAGAAATAGCAAGTGCCGAGAAG -3 ' ,如 SEQ ID NO.9 所示; 下游 5 ' -GTGTGGCCTCAGATGGTAAAGTC-3' ,如 SEQ ID NO.10 所示; Primer (1) upstream 5 ' -biotin AAGAAATAGCAAGTGCCGAGAAG -3 ' , as shown in SEQ ID NO. 9; downstream 5 '-GTGTGGCCTCAGATGGTAAAGTC-3', as shown in SEQ ID NO.
引物(3)上游 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' ,如 SEQ ID NO.13 所示; 下游 5 ' - TAAAGGGGCTGGAAATGTGC-3' ,如 SEQ ID NO.14 所示; Primer (3) upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5'-TAAAGGGGCTGGAAATGTGC-3', as shown in SEQ ID NO.
引物(5)上游 5 ' -biotin CCGAGGGAGACCAGGAAGAT -3 ' ,如 SEQ ID NO.17 所示; 下游 5 ' - CACAGGGCGAGGCTCATC-3' ,如 SEQ ID NO.18 所示; Primer (5) upstream 5 '-biotin CCGAGGGAGACCAGGAAGAT -3 ' , as SEQ ID NO. 17; downstream 5 ' - CACAGGGCGAGGCTCATC-3' as shown in SEQ ID NO.
以上针对PCA3基因所设计的引物组(1) 、(3)、(5)与上述设计的 PCA3 基因探针(1) 、(3)、(5)一一对应,分别对应组合为PSA引物/探针组1、3、5(见表8和表9); The above primer set (1), (3), (5) designed for the PCA3 gene and the PCA3 gene probe designed above (1) , (3), (5) one-to-one correspondence, respectively corresponding to PSA primer / probe set 1, 3, 5 (see Table 8 and Table 9);
β-actin基因 : 上游引物 5' -biotin TGGGTCAGAAGGATTCCTATGTG -3' , 如 SEQ ID NO.39 所示;下游引物 5'-GCTGGGGTGTTGAAGGTCTC -3', 如 SEQ ID NO.40 所示; --actin gene : upstream primer 5' -biotin TGGGTCAGAAGGATTCCTATGTG -3' , as shown in SEQ ID NO. 39; downstream primer 5'-GCTGGGGTGTTGAAGGTCTC -3', as shown in SEQ ID NO. 40;
2.2 多重PCR反应: 2.2 Multiplex PCR reactions:
方法同实施例 1 中( 三、2.2 )多重PCR反应方法。 The method was the same as in Example 1 (III, 2.2) multiplex PCR reaction method.
四.寡核苷酸探针和PCR产物的杂交 four. Hybridization of oligonucleotide probes and PCR products
方法同实施例 1 中( 四)寡核苷酸探针和PCR产物的杂交方法。 The method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
五.检测结果及分析 Fives. Test results and analysis
检测结果(荧光 MFI 值)如表 8 所示: The test results (fluorescence MFI values) are shown in Table 8:
表8 Table 8
结果分析如表9所示: The results are analyzed as shown in Table 9:
表9 Table 9
不同的 引物/探针组 检测 1-5 号 前列腺癌(PCa) 患者血液中的 PCA3 均为 阳性。 Different primers/probe groups detect PCA3 in the blood of patients with 1-5 prostate cancer (PCa) Positive.
不同的 引物/探针组 检测 6-8 号正常人血液中的 PCA3 均为 阴性。 Different primers/probe sets were found to be negative for PCA3 in the blood of normal humans 6-8.
同时,将患者呈现的荧光MFI值与内参β-actin基因的荧光MFI值相比,可得出PCA3基因的表达状况。 At the same time, the expression of the PCA3 gene can be obtained by comparing the fluorescence MFI value exhibited by the patient with the fluorescent MFI value of the β-actin gene of the internal reference.
实施例 5 : 不同引物及探针组合检测血液中PSA基因的液相芯片方法 Example 5: Liquid phase chip method for detecting PSA gene in blood by different primers and probe combinations
具体的检测方法包括如下步骤: The specific detection method includes the following steps:
一.检测PSA基因的微球混合液的制备 One. Preparation of microsphere mixture for detecting PSA gene
1. 按照以下序列合成寡核苷酸探针: 1. Synthesize oligonucleotide probes according to the following sequence:
针对PSA基因 : For the PSA gene:
探针A: 5 ' - AminolinkerC12 CAGAATCACCCGAGCAGGTG -3 ' , 如 SEQ ID NO.6 所示; 探针C: 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , 如 SEQ ID NO.8 所示; Probe A: 5 ' - AminolinkerC12 CAGAATCACCCGAGCAGGTG -3 ' , as shown in SEQ ID NO. 6; Probe C: 5 ' - Aminolinker C12 CACGCTTTTGTTCCTGATGC -3 ' , as SEQ ID NO. 8;
β-actin基因: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' , 如 SEQ ID NO.41 所示; --actin gene: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' as shown in SEQ ID NO. 41;
2 .将含有氨基修饰的寡核苷酸探针分别与编号为11、13、66号的3种羧基微球偶联 2 . Coupling an amino-modified oligonucleotide probe to three carboxy microspheres numbered 11, 13, and 66, respectively
2.1 取出一小份-20℃保存的新鲜干粉状EDC平衡到室温; 2.1 Take out a small portion of fresh dry powdered EDC stored at -20 ° C to equilibrate to room temperature;
2.2 用d H2O 分别 溶解PSA、β-actin的寡核苷酸探针,浓度为1mM(1nmol/μl);2.2 Dissolve the oligonucleotide probes of PSA and β-actin with d H 2 O at a concentration of 1 mM (1 nmol/μl);
2.3 分别全速涡旋编号为 11 、 13 、 66 号的 3 种羧基微球储存悬液至少3min,产生均一的微球悬液; 2.3 Full-speed vortex numbers 11 , 13 , 66 3 The carboxy microspheres are stored in suspension for at least 3 minutes to produce a uniform suspension of microspheres;
2.4-2.20 同实施例1中的2.4-2.20,只是将11管相应减少到3管,其他不变。 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 3 tubes, and the others are unchanged.
3. 微球混合液的配制 3. Preparation of microsphere mixture
将上述偶联了寡核苷酸探针的微球,如下列: 分别为PSA 探针A微球11、 PSA 探针C微球13 、β-actin探针微球66, 等比例混合,各种微球的终浓度为1500 个/μl,2-8℃避光保存。 The above microspheres coupled with an oligonucleotide probe are as follows: PSA probe A microsphere 11, PSA probe C microsphere 13, respectively , β-actin probe microspheres 66, mixed in equal proportions, the final concentration of various microspheres is 1500 / μl, 2-8 ° C protected from light.
二.样本的制备 two. Sample preparation
1-5 号临床样本为前列腺癌( PCa )患者的静脉血, 6-8 号临床样本为正常人的静脉血,制备方法同实施例 4 中( 二)样本的制备方法。 Clinical sample No. 1-5 is venous blood in patients with prostate cancer (PCa), 6-8 The clinical sample is normal human venous blood, and the preparation method is the same as the preparation method of the sample in (2) in Example 4.
三.多重RT-PCR three. Multiple RT-PCR
按照如下方法对上述的1-8号样本的mRNA进行多重逆转录PCR扩增: Multiple reverse transcription PCR amplification of mRNAs from samples 1-8 above was performed as follows:
1.cDNA 第一链的合成方法同实施例1中cDNA第一链的合成方法。 1. The method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
2. 多重PCR 2. Multiplex PCR
2.1 按照如下序列合成引物 2.1 Synthesis of primers according to the following sequence
针对PSA基因: For the PSA gene:
引物A:上游 5 ' -biotin TTGACCCCAAAGAAACTTCAGTGT -3 ' ,如 SEQ ID NO.29 所示; 下游 5 ' - TGCCCCATGACGTGATACCT-3' ,如 SEQ ID NO.30 所示; Primer A: upstream 5 ' -biotin TTGACCCCAAAGAAACTTCAGTGT -3 ' , as shown in SEQ ID NO. 29; downstream 5 ' - TGCCCCATGACGTGATACCT-3', as shown in SEQ ID NO.
引物C:上游 5 ' -biotin TGCACCCCTCATCCTGTCTC -3 ' ,如 SEQ ID NO.33 所示; 下游 5 ' - GCTGTGGCTGACCTGAAATACC-3' ,如 SEQ ID NO.34 所示; Primer C: upstream 5 '-biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
以上针对PSA所设计的引物组A 、C与上述设计的 PSA 探针A 、C一一对应,分别对应组合为 PSA 引物/探针组1、3(见表10和表11) ; The primer sets A and C designed for PSA are corresponding to the PSA probes A and C of the above design, and the corresponding combinations are respectively PSA primer/probe set 1, 3 (see Table 10 and Table 11);
β-actin基因 : 上游引物 5' -biotin TGGGTCAGAAGGATTCCTATGTG -3' , 如 SEQ ID NO.39 所示;下游引物 5'-GCTGGGGTGTTGAAGGTCTC -3', 如 SEQ ID NO.40 所示; --actin gene : upstream primer 5' -biotin TGGGTCAGAAGGATTCCTATGTG -3' , as shown in SEQ ID NO. 39; downstream primer 5'-GCTGGGGTGTTGAAGGTCTC -3', as shown in SEQ ID NO. 40;
2.2 多重PCR反应: 2.2 Multiplex PCR reactions:
方法同实施例 1 中( 三、2.2 )多重PCR反应方法。 The method was the same as in Example 1 (III, 2.2) multiplex PCR reaction method.
四.寡核苷酸探针和PCR产物的杂交 four. Hybridization of oligonucleotide probes and PCR products
方法同实施例 1 中( 四)寡核苷酸探针和PCR产物的杂交方法。 The method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
五.检测结果及分析 Fives. Test results and analysis
检测结果(荧光 MFI 值)如表 10 所示: The test results (fluorescence MFI values) are shown in Table 10:
表10 Table 10
结果分析如表11所示: The results are analyzed as shown in Table 11:
表11 Table 11
不同的引物/探针组检测1-5 号前列腺癌(PCa) 患者血液中的 PSA 均为阳性。 Different primers/probe groups tested positive for PSA in the blood of patients with 1-5 prostate cancer (PCa).
不同的 引物/探针组 检测 6-8 号正常人血液中的 PSA 均为阴性。 Different Primers/Probe Groups The PSA in the blood of normal people 6-8 was negative.
同时,将患者呈现的荧光MFI值与内参β-actin基因的荧光MFI值相比,可得出PSA基因的表达状况。 At the same time, the expression of the PSA gene can be obtained by comparing the fluorescence MFI value exhibited by the patient with the fluorescent MFI value of the β-actin gene of the internal reference.
实施例 6 : 联合检测血液中PCA3基因、PSA基因及PCA3/PSA比值的 液相芯片方法 Example 6: Combined detection of PCA3 gene, PSA gene and PCA3/PSA ratio in blood Liquid phase chip method
具体的检测方法包括如下步骤: The specific detection method includes the following steps:
一.检测PSA基因的微球混合液的制备 One. Preparation of microsphere mixture for detecting PSA gene
1. 按照以下序列合成寡核苷酸探针: 1. Synthesize oligonucleotide probes according to the following sequence:
PCA3 : 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , 如 SEQ ID NO.1 所示; PCA3 : 5 ' - AminolinkerC12 ATTTCTCACCTCTGTATCATC -3 ' , as shown in SEQ ID NO.
PSA : 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , 如 SEQ ID NO.8 所示; PSA : 5 ' - AminolinkerC12 CACGCTTTTGTTCCTGATGC -3 ' , as shown in SEQ ID NO.
β-actin基因: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' , 如 SEQ ID NO.41 所示; --actin gene: 5' - AminolinkerC12 TCATTGTAGAAGGTGTGGTG -3' as shown in SEQ ID NO. 41;
2 .将含有氨基修饰的寡核苷酸探针分别与编号为11、13、66号的3种羧基微球偶联 2 . Coupling an amino-modified oligonucleotide probe to three carboxy microspheres numbered 11, 13, and 66, respectively
2.1 取出一小份-20℃保存的新鲜干粉状EDC平衡到室温; 2.1 Take out a small portion of fresh dry powdered EDC stored at -20 ° C to equilibrate to room temperature;
2.2用dH2O分别溶解PCA3、PSA、β-actin的寡核苷酸探针,浓度为1mM(1nmol/μl); 2.2 Dissolve PCA3, PSA, β-actin oligonucleotide probes with dH2O at a concentration of 1 mM (1 nmol/μl);
2.3 分别全速涡旋编号为 11 、 13 、 66 号的 3 种羧基微球储存悬液至少3min,产生均一的微球悬液; 2.3 Full-speed vortex numbers 11 , 13 , 66 3 The carboxy microspheres are stored in suspension for at least 3 minutes to produce a uniform suspension of microspheres;
2.4-2.20 同实施例1中的2.4-2.20,只是将11管相应减少到3管,其他不变。 2.4-2.20 Same as 2.4-2.20 in Example 1, except that the 11 tubes are correspondingly reduced to 3 tubes, and the others are unchanged.
3. 微球混合液的配制 3. Preparation of microsphere mixture
将上述偶联了寡核苷酸探针的微球,如下列: 分别为PCA3 探针微球11、 PSA 探针微球13 、β-actin探针微球66, 等比例混合,各种微球的终浓度为1500 个/μl,2-8℃避光保存。 The above microspheres coupled with an oligonucleotide probe are as follows: PCA3 probe microsphere 11, PSA probe microsphere 13, respectively , β-actin probe microspheres 66, mixed in equal proportions, the final concentration of various microspheres is 1500 / μl, 2-8 ° C protected from light.
二.样本的制备 two. Sample preparation
1-10 号患者的临床样本为前列腺癌(PCa)患者的静脉血,11-20号患者的临床样本为良性前列腺增生(BPH)患者的静脉血,制备方法同实施例4 ( 二) 中样本的制备方法。 1-10 The clinical sample of the patient is venous blood of patients with prostate cancer (PCa), and the clinical sample of patients with type 11-20 is venous blood of patients with benign prostatic hyperplasia (BPH). The preparation method is the same as that of the example 4 (2) The preparation method of the middle sample.
三.多重RT-PCR three. Multiple RT-PCR
按照如下方法对上述的1-20号样本的mRNA进行多重逆转录PCR扩增: Multiple reverse RT-PCR amplification of mRNA from samples 1-20 above was performed as follows:
1.cDNA 第一链的合成方法同实施例1中cDNA第一链的合成方法。 1. The method for synthesizing the first strand of cDNA is the same as the method for synthesizing the first strand of cDNA in Example 1.
2. 多重PCR 2. Multiplex PCR
2.1 按照如下序列合成引物: 2.1 Synthesize primers according to the following sequence:
PCA3 :上游 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' ,如 SEQ ID NO.13 所示; 下游 5 ' - TAAAGGGGCTGGAAATGTGC-3' ,如 SEQ ID NO.14 所示 PCA3: upstream 5 ' -biotin GGTGGGAAGGACCTGATGATAC -3 ' , as shown in SEQ ID NO. 13; downstream 5 ' - TAAAGGGGCTGGAAATGTGC-3' , as shown in SEQ ID NO.
PSA : 上游 5 ' -biotin TGCACCCCTCATCCTGTCTC -3 ' ,如 SEQ ID NO.33 所示; 下游 5 ' - GCTGTGGCTGACCTGAAATACC-3' ,如 SEQ ID NO.34 所示 PSA: upstream 5 ' -biotin TGCACCCCTCATCCTGTCTC -3 ' , as SEQ ID NO. 33; downstream 5 ' - GCTGTGGCTGACCTGAAATACC-3' as shown in SEQ ID NO.
β-actin基因 : 上游 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG-3',如 SEQ ID NO.39 所示; 下游 5'-GCTGGGGTGTTGAAGGTCTC-3' ,如 SEQ ID NO.40 所示; --actin gene : upstream 5 ' -biotin TGGGTCAGAAGGATTCCTATGTG-3', as shown in SEQ ID NO. 39; downstream 5'-GCTGGGGTGTTGAAGGTCTC-3', such as SEQ ID NO. 40;
2.2 多重PCR反应: 2.2 Multiplex PCR reactions:
方法同实施例 1 中( 三、2.2 )多重PCR反应方法。 The method was the same as in Example 1 (III, 2.2) multiplex PCR reaction method.
四.寡核苷酸探针和PCR产物的杂交 four. Hybridization of oligonucleotide probes and PCR products
方法同实施例 1 中( 四)寡核苷酸探针和PCR产物的杂交方法。 The method is the same as the method of hybridization of the (IV) oligonucleotide probe and the PCR product of Example 1.
五.检测结果及分析 Fives. Test results and analysis
检测结果(荧光 MFI 值)如表 12 所示: The test results (fluorescence MFI values) are shown in Table 12:
表12 Table 12
结果分析如表13所示: The results are analyzed as shown in Table 13:
表13 Table 13
PCA3/PSA 平均值及分析如表14 PCA3/PSA average and analysis are shown in Table 14.
表14 Table 14
1-10 号 前列腺癌(PCa)组 患者血液中的 PCA3 和 PSA 均为阳性; 11-20 号 良性前列腺增生(BPH)组 患者 血液中 的 PCA3 为阴性,PSA为阳性;两组患者PCA3/PSA平均值相差27倍。此方法很好地把前列腺癌患者与良性前列腺增生患者区分开来。 Patients with prostate cancer (PCa) 1-10 were positive for PCA3 and PSA in the blood; 11-20 PCA3 in the blood of patients with benign prostatic hyperplasia (BPH) Negative, PSA was positive; the mean PCA3/PSA difference between the two groups was 27 times. This method is a good way to distinguish patients with prostate cancer from patients with benign prostatic hyperplasia.
同时,将 患者呈现 阳性的荧光MFI值与内参β-actin基因的荧光MFI值相比,可得出PCA3基因 和 PSA 基因的表达状况。 At the same time, the patient will be presented The positive fluorescent MFI value is compared with the fluorescent MFI value of the internal reference β-actin gene, and the expression status of PCA3 gene and PSA gene can be obtained.
在阅读了以上关于本发明的陈述内容之后,本领域的技术人员可以对本发明作各种修改或变化,其中包括引物或探针的各种变化以及引物或探针标记的各种变化,这些等价形式同样归属于本申请所附权利要求书中所限定的范围。 Various modifications or variations of the present invention, including various variations of primers or probes, and various variations of primer or probe labels, may be made by those skilled in the art after reading the above description of the present invention. The valence form is also subject to the scope defined in the claims appended hereto.
由于本发明利用了 液相芯片技术,使检测方法及试剂盒具有高灵敏度、高特异性、高通量、稳定性好、检测迅速、准确等突出优点,能够对PCA3基因和 / 或PSA基因 进行定性和定量检测,并能计算出PCA3基因/PSA基因的比值,因此能 在临床检测及诊断上得到更好的应用。 Because the invention utilizes The liquid phase chip technology enables the detection method and kit to have the advantages of high sensitivity, high specificity, high throughput, good stability, rapid detection and accuracy, and can be used for the PCA3 gene and/or PSA gene. Qualitative and quantitative tests can be performed, and the ratio of PCA3 gene/PSA gene can be calculated, so that it can be better applied in clinical detection and diagnosis.
序列表 Sequence table
<110> 邵棠 <110> Shao Yong
<120> 一种检测PCA3基因、PSA基因的液相芯片法及其诊断试剂盒 <120> A liquid phase chip method for detecting PCA3 gene and PSA gene and a diagnostic kit thereof
<130> DAPCT-1633 <130> DAPCT-1633
<160> 41 <160> 41
<170> PatentIn version 3.4 <170> PatentIn version 3.4
<210> 1 <210> 1
<211> 21 <211> 21
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> (1)...(21) <223> (1)...(21)
<400> 1 <400> 1
atttctcacc tctgtatcat c 21 Atttctcacc tctgtatcat c 21
<210> 2 <210> 2
<211> 19 <211> 19
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> (1)...(19) <223> (1)...(19)
<400> 2 <400> 2
ctcacctctg tatcatcag 19 Ctcacctctg tatcatcag 19
<210> 3 <210> 3
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> (1)...(20) <223> (1)...(20)
<400> 3 <400> 3
atctctgtgc ttccttttgt 20 Atctctgtgc ttccttttgt 20
<210> 4 <210> 4
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> (1)...(20) <223> (1)...(20)
<400> 4 <400> 4
caaatctgta atcccgttca 20 Caaatctgta atcccgttca 20
<210> 5 <210> 5
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> (1)...(20) <223> (1)...(20)
<400> 5 <400> 5
tatgtgtcaa gaggagagcc 20 Tatgtgtcaa gaggagagcc 20
<210> 6 <210> 6
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> (1)...(20) <223> (1)...(20)
<400> 6 <400> 6
cagaatcacc cgagcaggtg 20 Cagaatcacc cgagcaggtg 20
<210> 7 <210> 7
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> (1)...(20) <223> (1)...(20)
<400> 7 <400> 7
ggggtcaaga actcctctgg 20 Ggggtcaaga actcctctgg 20
<210> 8 <210> 8
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> (1)...(20) <223> (1)...(20)
<400> 8 <400> 8
cacgcttttg ttcctgatgc 20 Cacgcttttg ttcctgatgc 20
<210> 9 <210> 9
<211> 23 <211> 23
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 9 <400> 9
aagaaatagc aagtgccgag aag 23 Aagaaatagc aagtgccgag aag 23
<210> 10 <210> 10
<211> 23 <211> 23
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 10 <400> 10
gtgtggcctc agatggtaaa gtc 23 Gtgtggcctc agatggtaaa gtc 23
<210> 11 <210> 11
<211> 23 <211> 23
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 11 <400> 11
tggtgggaag gacctgatga tac 23 Tggtgggaag gacctgatga tac 23
<210> 12 <210> 12
<211> 22 <211> 22
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 12 <400> 12
tctcccaggg atctctgtgc tt 22 Tctcccaggg atctctgtgc tt 22
<210> 13 <210> 13
<211> 22 <211> 22
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 13 <400> 13
ggtgggaagg acctgatgat ac 22 Ggtgggaagg acctgatgat ac 22
<210> 14 <210> 14
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 14 <400> 14
taaaggggct ggaaatgtgc 20 Taaaggggct ggaaatgtgc 20
<210> 15 <210> 15
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 15 <400> 15
agccgaggga gaccaggaag 20 Agccgaggga gaccaggaag 20
<210> 16 <210> 16
<211> 22 <211> 22
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 16 <400> 16
cagcagatgt gtggcctcag at 22 Cagcagatgt gtggcctcag at 22
<210> 17 <210> 17
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 17 <400> 17
ccgagggaga ccaggaagat 20 Ccgagggaga ccaggaagat 20
<210> 18 <210> 18
<211> 18 <211> 18
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 18 <400> 18
cacagggcga ggctcatc 18 Cacagggcga ggctcatc 18
<210> 19 <210> 19
<211> 23 <211> 23
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 19 <400> 19
agaaatagca agtgccgaga agc 23 Agaaatagca agtgccgaga agc 23
<210> 20 <210> 20
<211> 18 <211> 18
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 20 <400> 20
cacagggcga ggctcatc 18 Cacagggcga ggctcatc 18
<210> 21 <210> 21
<211> 22 <211> 22
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 21 <400> 21
tatccacaca cacaggaagc ac 22 Tatccacaca cacaggaagc ac 22
<210> 22 <210> 22
<211> 24 <211> 24
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 22 <400> 22
cctctcattg gtaatgctca cttt 24 Cctctcattg gtaatgctca cttt 24
<210> 23 <210> 23
<211> 23 <211> 23
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 23 <400> 23
aaggctgctg actttaccat ctg 23 Aaggctgctg actttaccat ctg 23
<210> 24 <210> 24
<211> 23 <211> 23
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 24 <400> 24
tctaatgtcc ttccctcaca agc 23 Tctaatgtcc ttccctcaca agc 23
<210> 25 <210> 25
<211> 23 <211> 23
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 25 <400> 25
cgcttgtgag ggaaggacat tag 23 Cgcttgtgag ggaaggacat tag 23
<210> 26 <210> 26
<211> 25 <211> 25
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 26 <400> 26
gtgaagccat caagattttc tcgtc 25 Gtgaagccat caagattttc tcgtc 25
<210> 27 <210> 27
<211> 18 <211> 18
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 27 <400> 27
cagcaggacc caacgcat 18 Cagcaggacc caacgcat 18
<210> 28 <210> 28
<211> 24 <211> 24
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 28 <400> 28
gagagaggat tggtaagcga tgtg 24 Gagagaggat tggtaagcga tgtg 24
<210> 29 <210> 29
<211> 24 <211> 24
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 29 <400> 29
ttgaccccaa agaaacttca gtgt 24 Ttgaccccaa agaaacttca gtgt 24
<210> 30 <210> 30
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 30 <400> 30
tgccccatga cgtgatacct 20 Tgccccatga cgtgatacct 20
<210> 31 <210> 31
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 31 <400> 31
tcccacaccc gctctacgat 20 Tcccacaccc gctctacgat 20
<210> 32 <210> 32
<211> 22 <211> 22
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 32 <400> 32
cgtccagcac acagcatgaa ct 22 Cgtccagcac acagcatgaa ct 22
<210> 33 <210> 33
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 33 <400> 33
tgcacccctc atcctgtctc 20 Tgcacccctc atcctgtctc 20
<210> 34 <210> 34
<211> 22 <211> 22
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 34 <400> 34
gctgtggctg acctgaaata cc 22 Gctgtggctg acctgaaata cc 22
<210> 35 <210> 35
<211> 22 <211> 22
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 35 <400> 35
ggcagcattg aaccagagga gt 22 Ggcagcattg aaccagagga gt 22
<210> 36 <210> 36
<211> 22 <211> 22
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 36 <400> 36
cgatggtgtc cttgatccac tt 22 Cgatggtgtc cttgatccac tt 22
<210> 37 <210> 37
<211> 21 <211> 21
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 37 <400> 37
tcctcaggcc aggtgatgac t 21 Tcctcaggcc aggtgatgac t 21
<210> 38 <210> 38
<211> 22 <211> 22
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 38 <400> 38
cgtccagcac acagcatgaa ct 22 Cgtccagcac acagcatgaa ct 22
<210> 39 <210> 39
<211> 23 <211> 23
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 39 <400> 39
tgggtcagaa ggattcctat gtg 23 Tgggtcagaa ggattcctat gtg 23
<210> 40 <210> 40
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> 引物 <223> Primers
<400> 40 <400> 40
gctggggtgt tgaaggtctc 20 Gctggggtgt tgaaggtctc 20
<210> 41 <210> 41
<211> 20 <211> 20
<212> DNA <212> DNA
<213> 人工序列 <213> Artificial sequence
<220> <220>
<221> misc_feature <221> misc_feature
<223> (1)...(20) <223> (1)...(20)
<400> 41 <400> 41
tcattgtaga aggtgtggtg 20 Tcattgtaga aggtgtggtg 20
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| CN 201010509924 CN101942523B (en) | 2010-10-15 | 2010-10-15 | Liquid-phase chip method for detecting PCA3 gene and PSA gene and diagnostic reagent kit thereof |
| CN201010509924.6 | 2010-10-15 |
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| CN101942523B (en) * | 2010-10-15 | 2013-04-03 | 邵棠 | Liquid-phase chip method for detecting PCA3 gene and PSA gene and diagnostic reagent kit thereof |
| CN103436594A (en) * | 2012-10-16 | 2013-12-11 | 科蒂亚(新乡)生物技术有限公司 | Application of BDNA for detecting PCA3 in urine |
| CN104164474A (en) * | 2013-05-17 | 2014-11-26 | 刘代新 | Fluorescent quantitative PCR method for detecting expression quantities of PCA3 gene and PSA gene in urine and diagnosis kit thereof |
| CN104878077A (en) * | 2014-02-28 | 2015-09-02 | 谭巍 | PCA3 mRNA/ACPP mRNA RT-PCR detection primer and detection kit thereof |
| CN103966352B (en) * | 2014-05-29 | 2015-07-29 | 苏州工业园区为真生物医药科技有限公司 | PCA3, CST1 and CST4 are at the application prepared in prostate cancer marker and test kit thereof |
| CN106290919B (en) * | 2016-08-31 | 2018-03-27 | 天津市泌尿外科研究所 | For detecting the ELISA kit and application method of castration-resistant prostate cancer |
| CN108441557A (en) * | 2018-01-31 | 2018-08-24 | 广州瑞博奥生物科技有限公司 | PCA3 and PSA gene detecting kits and its application |
| CN110951871B (en) * | 2019-11-21 | 2024-01-05 | 瑞博奥(广州)生物科技股份有限公司 | PCA3 and PSA RNA detection kits and amplification systems |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2009036427A2 (en) * | 2007-09-14 | 2009-03-19 | Ventana Medical Systems, Inc. | Prostate cancer biomarkers |
| GB2463401A (en) * | 2008-11-12 | 2010-03-17 | Caris Mpi Inc | Diagnostic methods using exosomes |
| CN101942523A (en) * | 2010-10-15 | 2011-01-12 | 邵棠 | Liquid-phase chip method for detecting PCA3 gene and PSA gene and diagnostic reagent kit thereof |
-
2010
- 2010-10-15 CN CN 201010509924 patent/CN101942523B/en not_active Expired - Fee Related
-
2011
- 2011-09-06 WO PCT/CN2011/079361 patent/WO2012048607A1/en not_active Ceased
Patent Citations (3)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO2009036427A2 (en) * | 2007-09-14 | 2009-03-19 | Ventana Medical Systems, Inc. | Prostate cancer biomarkers |
| GB2463401A (en) * | 2008-11-12 | 2010-03-17 | Caris Mpi Inc | Diagnostic methods using exosomes |
| CN101942523A (en) * | 2010-10-15 | 2011-01-12 | 邵棠 | Liquid-phase chip method for detecting PCA3 gene and PSA gene and diagnostic reagent kit thereof |
Non-Patent Citations (1)
| Title |
|---|
| LIU GUANGXIANG ET AL.: "The expression of PCA3 mRNA in blood and in urine sediments obtained after prostatic massage of patients with prostate cancer", JOURNAL OF CLINICAL UROLOGY, vol. 23, no. 9, September 2008 (2008-09-01), pages 677 - 680 * |
Also Published As
| Publication number | Publication date |
|---|---|
| CN101942523A (en) | 2011-01-12 |
| CN101942523B (en) | 2013-04-03 |
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