WO2008098569A2 - Biologically active molecules, particularly based on pna and sirna, method for the cell-specific activation thereof, and application kit to be administered - Google Patents
Biologically active molecules, particularly based on pna and sirna, method for the cell-specific activation thereof, and application kit to be administered Download PDFInfo
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- WO2008098569A2 WO2008098569A2 PCT/DE2008/000279 DE2008000279W WO2008098569A2 WO 2008098569 A2 WO2008098569 A2 WO 2008098569A2 DE 2008000279 W DE2008000279 W DE 2008000279W WO 2008098569 A2 WO2008098569 A2 WO 2008098569A2
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/111—General methods applicable to biologically active non-coding nucleic acids
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/113—Non-coding nucleic acids modulating the expression of genes, e.g. antisense oligonucleotides; Antisense DNA or RNA; Triplex- forming oligonucleotides; Catalytic nucleic acids, e.g. ribozymes; Nucleic acids used in co-suppression or gene silencing
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- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/10—Type of nucleic acid
- C12N2310/14—Type of nucleic acid interfering nucleic acids [NA]
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- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/30—Chemical structure
- C12N2310/31—Chemical structure of the backbone
- C12N2310/318—Chemical structure of the backbone where the PO2 is completely replaced, e.g. MMI or formacetal
- C12N2310/3181—Peptide nucleic acid, PNA
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- C12N2310/00—Structure or type of the nucleic acid
- C12N2310/30—Chemical structure
- C12N2310/35—Nature of the modification
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- C12N2320/00—Applications; Uses
- C12N2320/30—Special therapeutic applications
- C12N2320/32—Special delivery means, e.g. tissue-specific
Definitions
- Bioly active molecules in particular based on PNA and siRNA, methods for their cell-specific activation and application kit for administration
- the invention relates to specific biologically active molecules, in particular based on “peptide nucleic acids” (PNA) and “short interfering RNA” (siRNA), a method for transfecting them into a target cell and in this target cell, or immediately before transfection cell-specific, and an application kit for administration in conjunction with a transfection system.
- PNA peptide nucleic acids
- siRNA short interfering RNA
- the said biologically active molecules interact after activation with the mRNA of the target gene and in the case of siRNA together with specific endoribonucleases form an RNA-protein complex called "RISC” (RNA induced silencing complex) .
- RISC RNA induced silencing complex
- biologically active molecules can be used, for example, for controlling and inhibiting the growth of abnormal cells, in particular in the treatment of tumors, in the treatment of viral infections, in age-specific treatments, etc.
- the cell-specifically activatable biologically active molecules can be used to modulate the gene expression of the target cells be used. Not only can the expression of genes be reduced, but they can also be increased by achieving a reduction in the expression of the negative regulator of the target gene by the biologically active molecules.
- Such molecules do not prevent the reading of a gene and the production of an mRNA, but in the case of siRNA, a cell-specific mechanism is initiated which degrades the target mRNA. Finally, as described above, the formation of a specific protein is suppressed without affecting the expression of other genes (post-transcriptional gene silencing).
- the siRNA and PNA molecules can be introduced directly into the cell, in particular via transfection reagents and electroporation (Zhang M et al .: Downregulation-enhanced green fluorescence protein gene expression by RNA interference in mammalian cells, RNA Biol. 2004 May, 1 (1), 74-7; Gilmore IR et al .: Delivery strategies for siRNA-mediated gene silencing, Epub 2004 May 22, Curr Drug Deliv. 2006 Apr, 3 (2), 147-5; US 6,506,559).
- siRNA is relatively unstable, which can be improved by chemical modifications (US 6,107,094).
- tissue- or cell-specific-labeled transfection reagents eg Antikö ⁇ er / antigen-labeled
- siRNA molecules Furthermore, it is known to inactivate siRNA molecules by binding fluorochromes in their biological activity and to convert them back into their active form by irradiation with light of a specific wavelength (QN Nguyen et al .: Light controllable siRNAs regulate gene suppression and phenotypes in cells, Biochim Biophys Acta, 2006). This activation is initiated from the outside and is in no way cell-specific. As a result, the said siRNA molecules after their activation in turn also act unintentionally in all other transfected cells and not only in the intended target cells.
- the invention is based on the object to provide biological active substances which are transfectable both in vitro and in vivo in a target cell and inhibit there exclusively the expression of genes, without in other cells of the organism, the drug-specific expression of the target gene and thus the formation of proteins.
- the biologically active molecules in particular PNA and siRNA, are covalently bonded to one or more peptides, each of which has at least one amino acid sequence selected in each case for target cell-typical enzymes and respectively for the covalent bond and its break-up.
- This covalent bond inactivates the biologically active molecules. There is thus no inhibition of specific gene expression after transfection into cells, as long as only one of the bound peptide chains remains on the PNA or siRNA molecules by the absence of the corresponding target cell-typical enzyme.
- the inactivated active substance molecules can be transfected into the target cells.
- said inactivating covalent bonds are cell-typically disrupted by the cell-specific enzyme (s) relevant to the amino acid sequences of the coupling peptide or peptides, thereby activating the biological activity of the molecule now in the target cell and dissolved by peptides. This then binds to the specific mRNA of the target cell and thereby inhibits gene expression in a known manner in this particular cell.
- the active agent molecules remain inactive, since the covalent bonds between the biologically active molecule, in particular PNA and siRNA, and the peptide (s) are due to the absence of the or the target cell-specific enzymes completely (no peptide bond was broken) or partially (not all peptide bonds were broken) remain.
- the biologically active molecule is due to the still covalent Peptide binding no binding with the mRNA of this cell, or it is in the case of using siRNA no RISC initiated.
- the molecule constructs according to the invention to be transfected in their inactive (bound) form are not only in or on tumors
- Target cells reach, but (which can hardly be avoided in practice) can also reach healthy cells are selectively exclusively in or on the tumor-targeted cells with the local cell-specific enzymes that said molecule in its biological
- the biologically active molecules in the state inactive by said peptide bonds reach the target cells or the target tissue and there, especially if they can not reach other cells in this region of the organism, completely before their transfection the target cell will be activated.
- the transfecting biologically inactive molecular constructs are administered systemically with appropriate peptide binding (with defined amino acid combinations).
- the molecular constructs can also be bound to other substances (for example nanoparticles as a carrier system) for better transport into or onto the target cells and for their stabilization.
- substances for example nanoparticles as a carrier system
- the proposed molecules with the biologically inactivating binding according to the invention to one or more peptides can be handled very well with transfection systems known per se, for example nanoparticles with or without ligand / antibody / antigen labeling, with enveloping nanoparticles or lipids and lipid-based transfection methods, be applied.
- transfection systems known per se, for example nanoparticles with or without ligand / antibody / antigen labeling, with enveloping nanoparticles or lipids and lipid-based transfection methods, be applied.
- transfection systems already reduce organ transplantation-related erroneous transfections, as a result of which, in relation to one another, cells are increasingly transfected in the target tissue and the quantities of active substance used can be kept to a minimum in each case.
- mis-transfection can not be prevented by use of the invention, the mis-transfected molecules in these other cells than the target cells, although still undesirable, are not biologically active. This status remains unchanged even in spite of inventive molecule activation in or on the target cells, so that the biological effect is selectively carried out exclusively in the target cells and in contrast to the known mechanisms a highly cell-selective modulation of gene expression is achieved.
- the invention is not limited to applications for the treatment of tumors and, for example, virus (eg HIV) infected cells.
- virus eg HIV
- the molecular constructs according to the invention can be used in all clinical pictures. which are based on increased or decreased gene expression, can be used to treat the disease itself or its symptoms. Furthermore, age or developmental changes in the gene expression pattern of cells can be treated.
- the invention may be used for any purpose whose purpose is to selectively alter the expression of genes in particular cells in vitro or in vivo.
- an application kit with which the biologically active molecules to be used are provided with the bound peptides which, according to the proposal, have amino acid sequences selected with regard to the particular enzymes of the target cells, as well as a suitable transfection system and other additives.
- the application kit contains all necessary ingredients as well as an application manual for the intended use by a user.
- FIG. 1 shows a general structure of the cell-specifically activatable molecular constructs according to the invention (inactivated state; in example a) the formation of the RISC is prevented by the altered spatial structure of the molecules and in example b) the binding to the niRNA is suppressed) a) Example of siRNA with two bound Peptides b) Example of a bound peptide PNA
- FIG. 2 shows an example of a siRNA molecule construct bound to a transfection system for the purpose of transfection into target cells
- this siRNA molecule construct a) Biologically inactive molecule construct for transfection into the target cell b) Binding disruption by the target cell specific enzyme c) Biologically activated molecule in or on the target cell with disrupted binding between the siRNA and the peptide
- FIG. 3 siRNA molecule construct with two peptide bonds and a transfection system for transfection into target cells a) molecule construct with peptide bonds b) disruption of the peptide bonds by different enzymes of the target cell
- Fig. 4 Representation of an exemplary compound between a peptide and a siRNA, a possible enzyme for cleavage of the peptide bond in this case caspase-4
- FIG. 1 shows the general structure of the cell-specifically activatable molecular constructs according to the invention in the inactivated state by way of example for siRNA (FIG. 1 a) and for PNA (FIG. 1 b).
- siRNA FIG. 1 a
- PNA FIG. 1 b
- a siRNA 1 is bound as a biologically active molecule to two peptides 2, 3. With these bilateral peptide bonds, siRNA 1 is biologically inactive and is transfected into a target cell (not shown for reasons of clarity).
- FIG. 1b illustrates how, instead of siRNA 1, a PNA 4 is bound to peptide 2 as a biologically active molecule and thus also biologically inactivated for transfection.
- FIG. 2 shows a possible construct which could be used for transfecting the peptide binding (peptide 2) inactive biologically active molecule (siRNA 1) into a target cell.
- peptide 2 inactive biologically active molecule
- FIG. 2 a antibody 6 for semi-selective binding to target cells, and also polyethylene glycol chains (PEG) 7 for anchoring peptide 2 and siRNA 1 could be bound to a nanoparticle 5.
- PEG polyethylene glycol chains
- the binding between the siRNA 1 and the inactivating peptide 2 is shown as an interface 8 for disruption by a selectively cutting and target cell specific enzyme 9 (Figure 2b).
- This enzyme 9 which only in or on the said (not If the target cell is present, the peptide bond of the siRNA 1 breaks down at the interface 8 (FIG. 2c) due to the specific amino acid sequence of the peptide 2.
- the biologically active molecule (siRNA 1) which is now again active due to the disrupted peptide bond, and the remaining construct consisting of the nanoparticle 5, the antibody 6, the polyethylene glycol chains (PEG) 7 and the peptide 2 dissolved by the siRNA 1, are thus separated.
- the peptide bond of siRNA 1 remains obtained according to the invention at the interface 8.
- the siRNA 1 is still inactive as a biologically active molecule (see Fig. 2a).
- the intended in the target cells biological effect of siRNA 1 is not performed by the unbroken interface 8 in other cells.
- Fig. 3 a an extension of the construct of Fig. 2 is shown.
- a peptide 2, 3 is bound to biological inactivation of the siRNA 1 at various points thereof (compare FIG.
- the various amino acid sequences in the bound peptides 2, 3 are selected so that two specific (or exclusively) specific enzymes 9, 10 present in or on the target cell can break up the peptide bonds of these cleavage sites 8, 8 ', respectively. If only one of the two peptides 2, 3 also does not exist in a cell other than the said target cell, into or onto the construct according to Fig.
- the siRNA 1 is separated from the remainder of the molecular construct (cf. also Fig. 2c).
- the siRNA 1 as a biologically active molecule only in this target cell unfold the intended purpose of the transfection effect.
- Figure 4 shows a possible linkage between the siRNA 1 and a peptide having a possible specific amino acid sequence 11 (amino acid sequence is -L-E-V-D-) for a caspase-4 selectively cleaving enzyme present in a target cell. This would break the connection for the activation of siRNA 1 at the caspase-4 cleavage site symbolized by the arrow and designated.
- the invention is not limited to the abovementioned amino acid sequence (-L-E-V-D-) shown in FIG. 4 for the disruption of the peptide bond on siRNA 1 by the target cell-specific enzyme caspase-4.
- amino acid sequences of the peptide for the proposed use for specific target cell enzymes are compiled by way of example:
- the four target cell enzymes mentioned in the above table may also be present on the surface of the target cell or in its environment and in this case would be able to use the corresponding peptide bond with the amino acid sequence selected according to the invention immediately prior to transfection for such application of the biologically active molecules to break into the target cell.
- This use would be conceivable in particular if the biologically active molecules which have reached the region of the target cell in the inactive state can no longer achieve any other (unwanted) cells after their activation in this part of the organism, either completely or partially already outside the target cell, for example for transfection into a target cell complex.
- an application kit in which the biologically active molecules to be used are provided with the bound peptides which have amino acid sequences as proposed with regard to the particular enzymes of the target cells.
- the application kit should be in ampoule form containing all necessary ingredients, conveniently also a selection of suitable transfection systems (such as nanoparticles or lipids), other additives (such as antibodies, ligands and polyethylene glycol) and one or more probes or syringes with cannula for injection of the mixture of the Ampoule contents in containing the target cells containing medium.
- suitable transfection systems such as nanoparticles or lipids
- other additives such as antibodies, ligands and polyethylene glycol
- probes or syringes with cannula for injection of the mixture of the Ampoule contents in containing the target cells containing medium.
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Description
I P2376 Patent- und Rechtskanzlei Bock- Bieber- Donath, Hans-Knöll-Str. 1, 07745 Jena | I P2376 Patent and Law Firm Bock- Bieber- Donath, Hans-Knöll-Str. 1, 07745 Jena |
Biologisch wirksame Moleküle, insbesondere auf Grundlage von PNA und siRNA, Verfahren zu deren zellspezifischen Aktivierung sowie Applikationskit zur VerabreichungBiologically active molecules, in particular based on PNA and siRNA, methods for their cell-specific activation and application kit for administration
Die Erfindung betrifft spezielle biologisch wirksame Moleküle, insbesondere auf Grundlage von „peptide nucleic acids" (PNA) und „short interfering RNA" (siRNA), ein Verfahren um diese in eine Zielzelle zu transfizieren und in dieser Zielzelle, bzw. unmittelbar vor der Transfektion zellspezifisch zu aktivieren, sowie einen Applikationskit zur Verabreichung in Verbindung mit einem Transfektionssystem. Die besagten biologisch wirksamen Moleküle interagieren nach ihrer Aktivierung mit der mRNA des Zielgens und im Falle von siRNA bilden sie zusammen mit speziellen Endoribonukleasen einen RNA-Proteinkomplex mit der Bezeichnung „RISC" (RNA induced silencing complex). Der RISC Komplex bindet an die Target-mRNA, wobei Endonukleasen die Ziel-mRNA schneiden. Auf diese Weise wird die Genexpression verhindert und somit das Entstehen von Zielproteinen gehemmt. Im Falle der Verwendung von aktivierten PNA Molekülen wird mit der Bindung an die Ziel-mRNA die Translation verhindert. Die zellspezifisch aktivierbaren, biologisch wirksamen Moleküle können beispielsweise zur Bekämpfung und Wachstumshemmung anormaler Zellen, insbesondere bei der Tumorbehandlung, bei der Behandlung von Virus-Infektionen, bei alterungsspezifischen Behandlungen etc. eingesetzt werden. Allgemein können die zellspezifisch aktivierbaren, biologisch wirksamen Moleküle zur Modulation der Genexpression der Zielzellen genutzt werden. Dabei kann die Expression von Genen nicht nur verringert, sondern auch erhöht werden, indem durch die biologisch aktiven Moleküle eine Verringerung der Expression der Negativ- Regulatoren des Zielgens erreicht wird.The invention relates to specific biologically active molecules, in particular based on "peptide nucleic acids" (PNA) and "short interfering RNA" (siRNA), a method for transfecting them into a target cell and in this target cell, or immediately before transfection cell-specific, and an application kit for administration in conjunction with a transfection system. The said biologically active molecules interact after activation with the mRNA of the target gene and in the case of siRNA together with specific endoribonucleases form an RNA-protein complex called "RISC" (RNA induced silencing complex) .The RISC complex binds to the target gene. In this way, gene expression is inhibited and thus the formation of target proteins is inhibited In the case of the use of activated PNA molecules, binding to the target mRNA prevents translation. biologically active molecules can be used, for example, for controlling and inhibiting the growth of abnormal cells, in particular in the treatment of tumors, in the treatment of viral infections, in age-specific treatments, etc. In general, the cell-specifically activatable biologically active molecules can be used to modulate the gene expression of the target cells be used. Not only can the expression of genes be reduced, but they can also be increased by achieving a reduction in the expression of the negative regulator of the target gene by the biologically active molecules.
Die Hemmung der Genexpression durch Einbringen von kurzen (19- 23bp), doppelsträngigen RNA-Molekülen (siRNA) bzw. PNA Molekülen in eukaryotische Zellen, die spezifisch für einen Sequenzabschnitt der mRNA eines Zielgens ist, wurde bereits beschrieben (Elbashir SM et al.: Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells, Nature, 2001 May 24, 411(6836), 494-8; Liu Y et al.: Efficient and isoform-selective inhibition of cellular gene expression by peptide nucleic acids, Biochemistry, 2004 Feb 24, 43(7), 1921-7; US 5,898,031; US 7,056,704).The inhibition of gene expression by introducing short (19-23 bp), double-stranded RNA molecules (siRNA) or PNA molecules into eukaryotic cells which is specific for a sequence segment of the mRNA of a target gene has already been described (Elbashir SM et al .: Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells, Nature, 2001 May 24, 411 (6836), 494-8; Liu Y et al .: Efficient and isoform-selective inhibition of cellular gene expression by peptide nucleic acids, Biochemistry, 2004 Feb 24, 43 (7), 1921-7; US 5,898,031; US 7,056,704).
Mit Hilfe solcher Moleküle wird nicht das Ablesen eines Gens und die Produktion einer mRNA verhindert, sondern es wird im Falle von siRNA ein zelleigener Mechanismus initiiert, der die Target-mRNA abbaut. Schließlich wird, wie vorbeschrieben, die Bildung eines spezifischen Proteins unterdrückt, ohne die Expression weiterer Gene zu beeinträchtigen (post-transcriptional gene silencing).Such molecules do not prevent the reading of a gene and the production of an mRNA, but in the case of siRNA, a cell-specific mechanism is initiated which degrades the target mRNA. Finally, as described above, the formation of a specific protein is suppressed without affecting the expression of other genes (post-transcriptional gene silencing).
Um die Expression eines Gens zu unterdrücken, können die siRNA und PNA Moleküle dabei insbesondere über Transfektionsreagenzien und Elektroporation direkt in die Zelle eingebracht werden (Zhang M et al.: Downregulation enhanced green fluorescence protein gene expression by RNA interference in mammalian cells, RNA Biol. 2004 May, 1(1), 74-7; Gilmore IR et al.: Delivery strategies for siRNA-mediated gene silencing, Epub 2004 May 22., Curr Drug Deliv. 2006 Apr, 3(2), 147-5; US 6,506,559).In order to suppress the expression of a gene, the siRNA and PNA molecules can be introduced directly into the cell, in particular via transfection reagents and electroporation (Zhang M et al .: Downregulation-enhanced green fluorescence protein gene expression by RNA interference in mammalian cells, RNA Biol. 2004 May, 1 (1), 74-7; Gilmore IR et al .: Delivery strategies for siRNA-mediated gene silencing, Epub 2004 May 22, Curr Drug Deliv. 2006 Apr, 3 (2), 147-5; US 6,506,559).
Von Nachteil ist dabei, dass die siRNA relativ instabil ist, was durch chemische Modifikationen verbessert werden kann (US 6,107,094).The disadvantage here is that the siRNA is relatively unstable, which can be improved by chemical modifications (US 6,107,094).
Ein spezielles Problem der therapeutischen Anwendung von biologisch wirksamen Molekülen ist eine Applikation in vivo. Für eine solcheA special problem of the therapeutic application of biologically active molecules is an application in vivo. For such
Applikation wurden Möglichkeiten entwickelt, die siRNA zu stabilisieren, um den Abbau zu vermindern (Morrissey et. al.: „ChemicalApplication possibilities have been developed to stabilize the siRNA to reduce degradation (Morrissey et al .: "Chemical
Modifications of Synthetic siRNA", Pharmaceutical Discovery, May 1,Modifications of Synthetic siRNA ", Pharmaceutical Discovery, May 1,
2005), und es wurden Transfektionsreagenzen, beispielsweise Nanopartikel, in vivo-jetPEI™ (Polyplus), entwickelt, welche auch in vivo die siRNA in Zellen einbringen (Vernejoul et al.: Antitumor effect of in vivo somatostatin receptor subtype 2 gene transfer in primary and metastatic pancreatic Cancer modeis, Cancer Research 62, 2002, 6124-2005), and transfection reagents, such as nanoparticles, have been developed in vivo jetPEI ™ (Polyplus), which also introduce the siRNA into cells in vivo (Vernejoul et al .: Antitumor effect of in vivo somatostatin receptor subtype 2 gene transfer in primary and metastatic pancreatic cancer modeis, Cancer Research 62, 2002, 6124-
31; Urban-Klein B, Werth S, Abuharbeid S, Czubayko F, Aigner A: RNAi-mediated gene-targeting through systemic application of polyethylenimine (PEI)-complexed siRNA in vivo, Gene Ther 12(5),31; Urban-Klein B, Werth S, Abuharbeid S, Czubayko F, Aigner A: RNAi-mediated gene-targeting through systemic application of polyethyleneimine (PEI) -complexed siRNA in vivo, Gene Ther 12 (5),
2005, 461-6.). Ebenfalls wurden Methoden entwickelt, verstärkt Zellen eines Zielgewebes mit siRNA in vivo zu transfizieren (Ikeda et. al.: „Ligand- Targeted Delivery of Therapeutic siRNA", Pharmaceutical Research, Vol. 23, No. 8, August 2006).2005, 461-6.). Also, methods have been developed to transfect cells of a target tissue with siRNA in vivo (Ikeda et al .: "Ligand-Targeted Delivery of Therapeutic siRNA", Pharmaceutical Research, Vol 23, No. 8, August 2006).
Die Verabreichung von biologisch aktiven Substanzen in vivo ist allerdings auf Grund der systemischen Wirkung oft problematisch. Das Einbringen dieser Substanzen selektiv in Zielzellen erfolgt nicht ausreichend spezifisch. Dies ist besonders bei siRNA- und PNA- Molekülen von Nachteil, die selektiv und ausschließlich in Zielzellen zur Wirkung kommen sollen. Durch gewebs- bzw. zellspezifisch-markierte Transfektionsreagenzien (z. B. Antiköφer/Antigen-markierteThe administration of biologically active substances in vivo, however, is often problematic due to the systemic effect. The introduction of these substances selectively in target cells is not sufficiently specific. This is particularly disadvantageous for siRNA and PNA molecules which are intended to be selective and exclusive in target cells. By tissue- or cell-specific-labeled transfection reagents (eg Antiköφer / antigen-labeled
Nanopartikel, TAT-Protein-Flankierung, u. a.) wird keine genügend große Zellspezifität erreicht. Fehltransfektionen sind die Folge.Nanoparticles, TAT protein flanking, u. a.), no sufficiently large cell specificity is achieved. Miscar transfections are the result.
Weiterhin ist bekannt, siRNA-Moleküle durch Bindung von Fluorochromen in ihrer biologischen Wirkung zu inaktivieren und durch Bestrahlung mit Licht einer bestimmten Wellenlänge in ihre aktive Form wieder zu überfuhren (QN Nguyen et al.: Light controllable siRNAs regulate gene suppression and phenotypes in cells, Biochim Biophys Acta, 2006). Diese Aktivierung wird von außen initiiert und erfolgt in keiner Weise zellspezifisch. Dadurch wirken die besagten siRNA- Moleküle nach ihrer Aktivierung wiederum auch ungewollt in allen anderen transfizierten Zellen und nicht nur in den bestimmungsgemäßen Zielzellen.Furthermore, it is known to inactivate siRNA molecules by binding fluorochromes in their biological activity and to convert them back into their active form by irradiation with light of a specific wavelength (QN Nguyen et al .: Light controllable siRNAs regulate gene suppression and phenotypes in cells, Biochim Biophys Acta, 2006). This activation is initiated from the outside and is in no way cell-specific. As a result, the said siRNA molecules after their activation in turn also act unintentionally in all other transfected cells and not only in the intended target cells.
Außerdem kann auch dieser Mechanismus nur schwer in vivo angewandt werden.In addition, this mechanism is also difficult to apply in vivo.
Der Erfindung liegt die Aufgabe zu Grunde, biologische Wirksubstanzen zu schaffen, welche sowohl in vitro als auch in vivo in eine Zielzelle transfizierbar sind und ausschließlich dort die Expression von Genen hemmen, ohne bei anderen Zellen des Organismus die wirkstoffspezifische Expression des Zielgens und damit die Bildung von Proteinen zu beeinflussen. Für die beispielhaft angeführte Behandlung von Tumoren bedeutet das, die Expression des Zielgens und damit die Proteinbildung in Tumorzellen selektiv zu hemmen, ohne gesunde Zellen, die auch von den Wirkstoffen erreicht werden können, sowie deren Fortbestand zu beeinträchtigen.The invention is based on the object to provide biological active substances which are transfectable both in vitro and in vivo in a target cell and inhibit there exclusively the expression of genes, without in other cells of the organism, the drug-specific expression of the target gene and thus the formation of proteins. For the exemplified treatment of tumors, this means the expression of the target gene and thus the protein formation in To selectively inhibit tumor cells, without affecting healthy cells, which can also be achieved by the active ingredients, as well as their survival.
Erfindungsgemäß werden die biologisch wirksamen Moleküle, insbesondere PNA und siRNA, kovalent an ein oder mehrere Peptide gebunden, welche jeweils wenigstens eine zu zielzellentypischen Enzymen ausgewählte und für die kovalente Bindung sowie deren Aufbrechen jeweils signifikante Aminosäuresequenz aufweisen. Durch diese kovalente Bindung werden die biologisch wirksamen Moleküle inaktiviert. Es findet somit nach der Transfektion in Zellen keine Hemmung einer spezifischen Genexpression statt, solang auch nur eine der gebundenen Peptidketten durch das NichtVorhandensein des entsprechenden zielzellentypischen Enzyms an den PNA- bzw. siRNA- Molekülen verbleibt.According to the invention, the biologically active molecules, in particular PNA and siRNA, are covalently bonded to one or more peptides, each of which has at least one amino acid sequence selected in each case for target cell-typical enzymes and respectively for the covalent bond and its break-up. This covalent bond inactivates the biologically active molecules. There is thus no inhibition of specific gene expression after transfection into cells, as long as only one of the bound peptide chains remains on the PNA or siRNA molecules by the absence of the corresponding target cell-typical enzyme.
Durch ein geeignetes Transfektionssystem, beispielsweise Nanopartikel oder Hüllmoleküle wie Liposomen, können die inaktivierten Wirkstoffmoleküle in die Zielzellen transfiziert werden. Dort werden die besagten inaktivierenden kovalenten Bindungen durch das oder die zellspezifischen Enzyme, welche für die Aminosäuresequenzen des oder der Kopplungspeptide relevant sind, zelltypisch aufgebrochen, wodurch das nunmehr in der Zielzelle befindliche und von Peptiden gelöste Molekül in seiner biologischen Wirksamkeit aktiviert wird. Dieses bindet darauf hin an die spezifische mRNA der Zielzelle und hemmt dadurch in an sich bekannter Weise die Genexpression in dieser speziellen Zelle.By means of a suitable transfection system, for example nanoparticles or sheath molecules such as liposomes, the inactivated active substance molecules can be transfected into the target cells. There, said inactivating covalent bonds are cell-typically disrupted by the cell-specific enzyme (s) relevant to the amino acid sequences of the coupling peptide or peptides, thereby activating the biological activity of the molecule now in the target cell and dissolved by peptides. This then binds to the specific mRNA of the target cell and thereby inhibits gene expression in a known manner in this particular cell.
In allen anderen Zellen des Organismus als die vorbestimmten Zielzellen, in welche die besagten inaktiven Molekülkonstrukte ebenfalls gelangen können, bleiben die Wirkstoffmoleküle inaktiv, da die kovalenten Bindungen zwischen dem biologisch wirksamen Molekül, insbesondere PNA und siRNA, und dem oder den Peptiden durch das NichtVorhandensein des oder der zielzellenspezifischen Enzyme vollständig (keine Peptidbindung wurde aufgebrochen) oder teilweise (nicht alle Peptidbindungen wurden aufgebrochen) bestehen bleiben. Das biologisch wirksame Molekül geht auf Grund der weiterhin kovalenten Peptidbindung keine Bindung mit der mRNA dieser Zelle ein, bzw. es wird im Fall der Verwendung von siRNA kein RISC initiiert.In all other cells of the organism than the predetermined target cells into which the said inactive molecular constructs can also enter, the active agent molecules remain inactive, since the covalent bonds between the biologically active molecule, in particular PNA and siRNA, and the peptide (s) are due to the absence of the or the target cell-specific enzymes completely (no peptide bond was broken) or partially (not all peptide bonds were broken) remain. The biologically active molecule is due to the still covalent Peptide binding no binding with the mRNA of this cell, or it is in the case of using siRNA no RISC initiated.
Wenngleich beispielsweise bei der Tumorbehandlung die zu transfizierenden erfindungsgemäßen Molekülkonstrukte in ihrer inaktiven (gebundenen) Form nicht nur in bzw. an tumorerkrankteAlthough, for example, in the treatment of tumors, the molecule constructs according to the invention to be transfected in their inactive (bound) form are not only in or on tumors
Zielzellen gelangen, sondern (was in der Praxis kaum zu vermeiden ist) auch gesunde Zellen erreichen können, werden selektiv ausschließlich in oder an den tumorerkrankten Zielzellen mit dem dortigen zellspezifischen Enzymen das besagte Molekül in seiner biologischenTarget cells reach, but (which can hardly be avoided in practice) can also reach healthy cells are selectively exclusively in or on the tumor-targeted cells with the local cell-specific enzymes that said molecule in its biological
Wirkung aktiviert und die wirkstoffbezogene Expression des Zielgens gehemmt. Diese Genexpression und damit die Proteinbildung für denActivated and inhibited the drug-related expression of the target gene. This gene expression and thus the protein formation for the
Fortbestand der gesunden Zellen bleibt trotz der in diesen nicht erkrankten (bzw. für die beabsichtigte biologische Wirkung nicht zweckbestimmten) Zellen befindlichen, jedoch permanent inaktivenThe survival of the healthy cells remains despite the non-diseased (or intact for the intended biological effect) located cells, but permanently inactive
Molekülkonstrukte von diesem Wirkstoff unberührt.Molecular constructs unaffected by this drug.
Es ist auch möglich, eine oder mehrere besagte kovalente Bindungen bereits unmittelbar vor der Transfektion in die Zielzelle durch ein oder mehrere auf deren Oberfläche oder in deren Umgebung vorhandene zellspezifische Enzyme teilweise oder vollständig (bezogen auf die Gesamtzahl der kovalenten Peptidbindungen) zu aktivieren. Beispielsweise könnten mehrere und jeweils auf unterschiedliche Enzyme der Zielzelle ausgerichtete Peptidketten mit Aminosäuresequenzen vorhanden sein, von denen eine oder mehrere Bindungen bereits unmittelbar an der Oberfläche der Zielzelle oder in deren Umgebung aufgebrochen werden.It is also possible to activate one or more of these covalent bonds already partially before the transfection into the target cell by one or more cell-specific enzymes present on their surface or in their environment (based on the total number of covalent peptide bonds). For example, multiple and each directed to different enzymes of the target cell peptide chains could be present with amino acid sequences of which one or more bonds are already broken directly on the surface of the target cell or in their environment.
Es wäre auch denkbar, dass die biologisch wirksamen Moleküle im durch die besagten Peptidbindungen inaktiven Zustand bis zu den Zielzellen bzw. bis zum Zielgewebe gelangen und dort, insbesondere, wenn sie in diesem Bereich des Organismus keine anderen Zellen erreichen können, vollständig vor ihrer Transfektion in die Zielzelle aktiviert werden.It would also be conceivable that the biologically active molecules in the state inactive by said peptide bonds reach the target cells or the target tissue and there, especially if they can not reach other cells in this region of the organism, completely before their transfection the target cell will be activated.
Durch die vorgeschlagene hochselektive Wirkung der Moleküle infolge Zielzellen-enzymspezifischer Inaktivität/Aktivierung können die zu transfizierenden biologisch inaktiven Molekülkonstrukte bei entsprechender Peptid-Bindung (mit definierten Aminosäurekombinationen) systemisch verabreicht werden.Due to the proposed highly selective effect of the molecules as a result of target cell-enzyme-specific inactivity / activation, the transfecting biologically inactive molecular constructs are administered systemically with appropriate peptide binding (with defined amino acid combinations).
Die Molekülkonstrukte können zum besseren Transport in bzw. an die Zielzellen sowie zu ihrer Stabilisierung außerdem an weitere Stoffe (beispielsweise Nanopartikel als Trägersystem) gebunden werden.The molecular constructs can also be bound to other substances (for example nanoparticles as a carrier system) for better transport into or onto the target cells and for their stabilization.
Darüber hinaus können zur Verbesserung der Transfektionsrate an sich bekannte Wirkungsmechanismen, welche die Gewebs- oder Zellselektivität erhöhen (beispielsweise Ligand/Antikörper/Antigen- markierte Nanopartikel, TAT-Protein-Flankierung) genutzt werden. Die Kombination mit diesen bekannten Wirkungsmechanismen ergänzen die beschriebene Erfindung und führen aufgrund der Vorselektion der Zielzellen zu einer Verringerung der einzusetzenden erfindungsgemäßen Wirkstoffmenge. Dies resultiert daraus, dass bei der Wirkstoffeinbringung in vivo in den Blutkreislauf vor allem Zellen in gut durchbluteten Geweben erreicht werden. Die vorgeschlagenen Moleküle mit der erfindungsgemäßen biologisch inaktivierenden Bindung an ein oder mehrere Peptide können sehr gut im Handling mit an sich bekannten Transfektionssystemen, wie beispielsweise Nanopartikel mit oder ohne Ligand/Antiköφer/Antigenmarkierung, mit umhüllenden Nanopartikel oder Lipide sowie Lipid-basierte Transfek- tionsmethoden, angewendet werden. Solche Transfektionssysteme verringern je nach bestimmungsgemäßem Einsatz schon an sich organismusbedingte Fehltransfektionen, wodurch, in Relation gesehen, vermehrt Zellen im Zielgewebe transfiziert und auf diese Weise die zur Anwendung kommenden Wirkstoffmengen jeweils auf ein Minimum beschränkt werden können. Durch Anwendung der Erfindung können diese Fehltransfektionen zwar nicht verhindert werden, jedoch sind die fehltransfizierten Moleküle in diesen anderen Zellen als die Zielzellen, wenngleich nach wie vor unerwünscht, biologisch nicht wirksam. Dieser Status bleibt auch trotz erfindungsgemäßer Molekülaktivierung in oder an den Zielzellen unverändert, so dass die biologische Wirkung selektiv ausschließlich in den Zielzellen erfolgt und im Gegensatz zu den bekannten Mechanismen eine hochgradig zellselektive Modulation der Genexpression erreicht wird.In addition, in order to improve the transfection rate, known mechanisms of action which increase the tissue or cell selectivity (for example ligand / antibody / antigen-labeled nanoparticles, TAT protein flanking) can be used. The combination with these known mechanisms of action supplement the described invention and lead to a reduction of the amount of active ingredient according to the invention to be used due to the preselection of the target cells. This results from the fact that in the introduction of active ingredient in vivo into the bloodstream, especially cells in well-perfused tissues are achieved. The proposed molecules with the biologically inactivating binding according to the invention to one or more peptides can be handled very well with transfection systems known per se, for example nanoparticles with or without ligand / antibody / antigen labeling, with enveloping nanoparticles or lipids and lipid-based transfection methods, be applied. Depending on their intended use, such transfection systems already reduce organ transplantation-related erroneous transfections, as a result of which, in relation to one another, cells are increasingly transfected in the target tissue and the quantities of active substance used can be kept to a minimum in each case. While this mis-transfection can not be prevented by use of the invention, the mis-transfected molecules in these other cells than the target cells, although still undesirable, are not biologically active. This status remains unchanged even in spite of inventive molecule activation in or on the target cells, so that the biological effect is selectively carried out exclusively in the target cells and in contrast to the known mechanisms a highly cell-selective modulation of gene expression is achieved.
Die Erfindung ist nicht auf Anwendungen zur Behandlung von Tumoren und beispielsweise Virus (z. B. HIV) infizierten Zellen beschränkt. Die erfindungsgemäßen Molekülkonstrukte können bei allen Krankheitsbildern. denen eine verstärkte oder verminderte Genexpression zu Grunde liegt, verwendet werden, um die Krankheit selbst oder deren Symptome zu behandeln. Weiterhin können alters- oder entwicklungsbedingte Veränderungen im Genexpressionsmuster von Zellen behandelt werden. Außerdem kann die Erfindung für alle Zwecke benutzt werden, deren Ziel die selektive Veränderung der Expression von Genen in bestimmten Zellen in vitro oder in vivo ist.The invention is not limited to applications for the treatment of tumors and, for example, virus (eg HIV) infected cells. The molecular constructs according to the invention can be used in all clinical pictures. which are based on increased or decreased gene expression, can be used to treat the disease itself or its symptoms. Furthermore, age or developmental changes in the gene expression pattern of cells can be treated. In addition, the invention may be used for any purpose whose purpose is to selectively alter the expression of genes in particular cells in vitro or in vivo.
Vorteilhaft ist ein Applikationskit, mit welchem die einzusetzenden biologisch wirksamen Moleküle mit den gebundenen Peptiden, die vorschlagsgemäß in Hinsicht auf die besonderen Enzyme der Zielzellen ausgewählte Aminosäurensequenzen aufweisen, sowie ein jeweils geeignetes Transfektionssystem und sonstige Zusatzstoffe bereitgestellt werden. Der Applikationskit enthält alle notwendigen Inhaltsstoffe sowie eine Anwendungsanleitung für den bestimmungsgemäßen Einsatz durch einen Anwender.Advantageous is an application kit with which the biologically active molecules to be used are provided with the bound peptides which, according to the proposal, have amino acid sequences selected with regard to the particular enzymes of the target cells, as well as a suitable transfection system and other additives. The application kit contains all necessary ingredients as well as an application manual for the intended use by a user.
Die Erfindung soll nachstehend anhand von in der Zeichnung dargestellten Ausführungsbeispielen näher erläutert werden. Es zeigen:The invention will be explained below with reference to exemplary embodiments illustrated in the drawing. Show it:
Fig. 1: allgemeine Struktur der erfindungsgemäßen zellspezifisch aktivierbaren Molekülkonstrukte (inaktivierter Zustand; durch veränderte Raumstruktur der Moleküle wird im Beispiel a) die Formierung des RISC verhindert und im Beispiel b) die Bindung an die niRNA unterbunden) a) Beispiel für siRNA mit zwei gebundenen Peptiden b) Beispiel für PNA mit einem gebundenem Peptid1 shows a general structure of the cell-specifically activatable molecular constructs according to the invention (inactivated state; in example a) the formation of the RISC is prevented by the altered spatial structure of the molecules and in example b) the binding to the niRNA is suppressed) a) Example of siRNA with two bound Peptides b) Example of a bound peptide PNA
Fig. 2: Beispiel für ein siRNA Molekülkonstrukt, gebunden an ein Transfektionssystem zum Zweck der Transfektion in Zielzellen,2 shows an example of a siRNA molecule construct bound to a transfection system for the purpose of transfection into target cells,
Aktivierung dieses siRNA Molekülkonstrukts a) biologisch inaktives Molekülkonstrukt zur Transfektion in die Zielzelle b) Bindungsaufbruch durch das zielzellenspezifische Enzym c) in oder an der Zielzelle biologisch aktiviertes Molekül mit aufgebrochener Bindung zwischen der siRNA und dem PeptidActivation of this siRNA molecule construct a) Biologically inactive molecule construct for transfection into the target cell b) Binding disruption by the target cell specific enzyme c) Biologically activated molecule in or on the target cell with disrupted binding between the siRNA and the peptide
Fig. 3: siRNA Molekülkonstrukt mit zwei Peptidbindungen und einem Transfektionssystem zur Transfektion in Zielzellen a) Molekülkonstrukt mit Peptidbindungen b) Aufbruch der Peptidbindungen durch unterschiedliche Enzyme der ZielzelleFIG. 3: siRNA molecule construct with two peptide bonds and a transfection system for transfection into target cells a) molecule construct with peptide bonds b) disruption of the peptide bonds by different enzymes of the target cell
Fig. 4: Darstellung einer beispielhaften Verbindung zwischen einem Peptid und einer siRNA, ein mögliches Enzym zur Spaltung der Peptidbindung ist in diesem Fall Caspase-4Fig. 4: Representation of an exemplary compound between a peptide and a siRNA, a possible enzyme for cleavage of the peptide bond in this case caspase-4
In Fig. 1 ist die allgemeine Struktur der erfindungsgemäßen zellspezifisch aktivierbaren Molekülkonstrukte im inaktivierten Zustand beispielhaft für siRNA (Fig. Ia) und für PNA (Fig. Ib) dargestellt. In Fig. Ia ist eine siRNA 1 als biologisch wirksames Molekül an zwei Peptide 2, 3 gebunden. Mit diesen beidseitigen Peptidbindungen ist die siRNA 1 biologisch inaktiv und wird in eine (aus Übersichtsgründen nicht dargestellte) Zielzelle transfiziert.FIG. 1 shows the general structure of the cell-specifically activatable molecular constructs according to the invention in the inactivated state by way of example for siRNA (FIG. 1 a) and for PNA (FIG. 1 b). In Fig. Ia, a siRNA 1 is bound as a biologically active molecule to two peptides 2, 3. With these bilateral peptide bonds, siRNA 1 is biologically inactive and is transfected into a target cell (not shown for reasons of clarity).
Fig. Ib veranschaulicht, wie statt der siRNA 1 eine PNA 4 als biologisch wirksames Molekül an das Peptid 2 gebunden und damit zur Transfektion ebenfalls biologisch inaktiviert ist.FIG. 1b illustrates how, instead of siRNA 1, a PNA 4 is bound to peptide 2 as a biologically active molecule and thus also biologically inactivated for transfection.
In Fig. 2 ist ein mögliches Konstrukt dargestellt, welches zur Transfektion des durch Peptidbindung (Peptid 2) inaktiven biologisch wirksamen Moleküls (siRNA 1) in eine Zielzelle zum Einsatz kommen könnte. Dabei könnten (Fig. 2a) an einem Nanopartikel 5 Antikörper 6 zur semi-selektiven Bindung an Zielzellen, sowie Polyethylen- glycolketten (PEG) 7 zur Verankerung des Peptids 2 und der siRNA 1 gebunden sein.FIG. 2 shows a possible construct which could be used for transfecting the peptide binding (peptide 2) inactive biologically active molecule (siRNA 1) into a target cell. In this case (FIG. 2 a), antibody 6 for semi-selective binding to target cells, and also polyethylene glycol chains (PEG) 7 for anchoring peptide 2 and siRNA 1 could be bound to a nanoparticle 5.
Weiterhin ist die Bindung zwischen der siRNA 1 und dem inaktivierenden Peptid 2 als Schnittstelle 8 zum Aufbrechen durch ein selektiv schneidendes und zielzellenspezifisches Enzym 9 dargestellt (Fig. 2b). Dieses Enzym 9, welches nur in oder an der besagten (nicht dargestellten) Zielzelle vorhanden ist, bricht die Peptidbindung der siRNA 1 aufgrund der speziellen Aminosäuresequenz des Peptids 2 an der Schnittstelle 8 (Fig. 2c) auf. Das durch die aufgebrochene Peptidbindung nunmehr wieder aktive biologisch wirksame Molekül (siRNA 1) sowie das restliche Konstrukt, bestehend aus dem Nanopartikel 5, dem Antikörper 6, den Polyethylenglycolketten (PEG) 7 und dem von der siRNA 1 gelösten Peptid 2, sind somit separiert. In oder an anderen Zellen des Organismus als den bestimmungsgemäßen Zielzellen, in welche das biologisch inaktive Molekülkonstrukt (siehe Fig. 2a und 2b) durch Transfektion ebenfalls gelangt und in oder an denen jedoch das zielzellenspezifϊsche Enzym 9 nicht vorhanden ist, bleibt die Peptidbindung der siRNA 1 an der Schnittstelle 8 erfindungsgemäß erhalten. Die siRNA 1 ist als biologisch wirksames Molekül weiterhin inaktiv (vgl. Fig. 2a). Die in den Zielzellen bezweckte biologische Wirkung der siRNA 1 wird durch die nicht aufgebrochene Schnittstelle 8 in anderen Zellen nicht ausgeführt.Furthermore, the binding between the siRNA 1 and the inactivating peptide 2 is shown as an interface 8 for disruption by a selectively cutting and target cell specific enzyme 9 (Figure 2b). This enzyme 9, which only in or on the said (not If the target cell is present, the peptide bond of the siRNA 1 breaks down at the interface 8 (FIG. 2c) due to the specific amino acid sequence of the peptide 2. The biologically active molecule (siRNA 1), which is now again active due to the disrupted peptide bond, and the remaining construct consisting of the nanoparticle 5, the antibody 6, the polyethylene glycol chains (PEG) 7 and the peptide 2 dissolved by the siRNA 1, are thus separated. In or on other cells of the organism than the intended target cells into which the biologically inactive molecule construct (see FIGS. 2 a and 2 b) likewise transfects and in or on which the target cell-specific enzyme 9 is not present, the peptide bond of siRNA 1 remains obtained according to the invention at the interface 8. The siRNA 1 is still inactive as a biologically active molecule (see Fig. 2a). The intended in the target cells biological effect of siRNA 1 is not performed by the unbroken interface 8 in other cells.
In Fig. 3 a ist eine Erweiterung des Konstrukts aus Fig. 2 dargestellt. Dabei ist wiederum zur biologischen Inaktivierung der siRNA 1 an verschiedenen Stellen derselben jeweils ein Peptid 2, 3 gebunden (vgl. Fig. Ia). Die verschiedenen Aminosäuresequenzen in den gebundenen Peptiden 2, 3 sind so gewählt, dass zwei (ausschließlich) in oder an der Zielzelle vorhandene spezifische Enzyme 9, 10 die Peptidbindungen dieser Schnittstellen 8 bzw. 8' jeweils aufbrechen können. Sollte auch nur eines der beiden Peptide 2, 3 bei einer anderen Zelle als der besagten Zielzelle, in bzw. an das Konstrukt gemäß Fig. 3 a (z. B. nach Fehltransfektion) ebenfalls gelangt, nicht vorhanden sein, bleibt zumindest einer der beiden Peptidbindungen an den Schnittstellen 8 bzw. 8' auf Grund des Fehlens des äquivalenten zielzellenspezifischen Enzyms 9, 10 erhalten. Die siRNA 1 wäre selbst bei einer einzigen noch bestehenden Peptidbindung weiterhin inaktiv. Ausschließlich bei der Zielzelle, in oder an welcher die Enzyme 9, 10 durch die vorgenannten definierten Aminosäuresequenzen der Peptide 2, 3 beide Schnittstellen 8, 8' aufbrechen (angedeutet in Fig. 3b), wird die siRNA 1 vom übrigen Molekülkonstrukt vereinzelt (vgl. auch Fig. 2c). Somit kann die siRNA 1 als biologisch aktives Molekül auch nur in dieser Zielzelle die mit der Transfektion bezweckte Wirkung entfalten.In Fig. 3 a, an extension of the construct of Fig. 2 is shown. Again, in each case a peptide 2, 3 is bound to biological inactivation of the siRNA 1 at various points thereof (compare FIG. The various amino acid sequences in the bound peptides 2, 3 are selected so that two specific (or exclusively) specific enzymes 9, 10 present in or on the target cell can break up the peptide bonds of these cleavage sites 8, 8 ', respectively. If only one of the two peptides 2, 3 also does not exist in a cell other than the said target cell, into or onto the construct according to Fig. 3a (for example after miscoletion), at least one of the two remains Peptide bonds at the interfaces 8 and 8 'due to the lack of the equivalent target cell specific enzyme 9, 10 obtained. The siRNA 1 would continue to be inactive, even with a single remaining peptide bond. Exclusively at the target cell, in or at which the enzymes 9, 10 break through both interfaces 8, 8 'through the abovementioned defined amino acid sequences of the peptides 2, 3 (indicated in FIG. 3b), the siRNA 1 is separated from the remainder of the molecular construct (cf. also Fig. 2c). Thus, the siRNA 1 as a biologically active molecule only in this target cell unfold the intended purpose of the transfection effect.
Fig. 4 zeigt eine mögliche Verbindung zwischen der siRNA 1 und einem Peptid mit einer möglichen spezifischen Aminosäuresequenz 11 (Aminosäuresequenz ist -L-E-V-D-) für ein in einer Zielzelle vorhandenes selektiv spaltendes Enzym Caspase-4 dargestellt. Dieses würde die Verbindung zur Aktivierung der siRNA 1 an der durch Pfeildarstellung symbolisierten und bezeichneten Spaltstelle für Caspase-4 aufbrechen.Figure 4 shows a possible linkage between the siRNA 1 and a peptide having a possible specific amino acid sequence 11 (amino acid sequence is -L-E-V-D-) for a caspase-4 selectively cleaving enzyme present in a target cell. This would break the connection for the activation of siRNA 1 at the caspase-4 cleavage site symbolized by the arrow and designated.
Im abgebildeten Bespiel würde nach besagter Abspaltung durch das Enzym Caspase-4 ein Molekülrest an der siRNA 1 verbleiben, was aber deren biologische Aktivität nicht beeinträchtigt.In the example shown, after the cleavage by the enzyme caspase-4, a residue of the molecule would remain on siRNA 1, but this does not impair its biological activity.
Die Erfindung ist nicht auf die vorgenannte und in Fig. 4 dargestellte Aminosäuresequenz (-L-E-V-D-) für den Aufbruch der Peptidbindung an der siRNA 1 durch das zielzellenspezifϊsche Enzym Caspase-4 beschränkt. In nachstehender Tabelle sind weitere Aminosäuresequenzen des Peptids zur vorschlagsgemäßen Verwendung für spezielle Zielzellenenzyme beispielhaft zusammengestellt:The invention is not limited to the abovementioned amino acid sequence (-L-E-V-D-) shown in FIG. 4 for the disruption of the peptide bond on siRNA 1 by the target cell-specific enzyme caspase-4. In the following table, further amino acid sequences of the peptide for the proposed use for specific target cell enzymes are compiled by way of example:
Die vier in vorstehender Tabelle erstgenannten Zielzellenenzyme können auch auf der Oberfläche der Zielzelle bzw. in deren Umgebung vorkommen und wären in diesem Fall in der Lage, für eine solche Anwendung der biologisch wirksamen Moleküle die entsprechende Peptidbindung mit der erfindungsgemäß ausgewählten Aminosäuresequenz bereits unmittelbar vor der Transfektion in die Zielzelle aufzubrechen. Diese Verwendung wäre insbesondere denkbar, wenn die im inaktiven Zustand in den Bereich der Zielzelle gelangten biologisch wirksamen Moleküle nach ihrer gänzlich oder teilweise bereits außerhalb der Zielzelle erfolgten Aktivierung in diesem Teil des Organismus keine anderen (unerwünschten) Zellen mehr erreichen können, beispielsweise zur Transfektion in einen Zielzellenkomplex. The four target cell enzymes mentioned in the above table may also be present on the surface of the target cell or in its environment and in this case would be able to use the corresponding peptide bond with the amino acid sequence selected according to the invention immediately prior to transfection for such application of the biologically active molecules to break into the target cell. This use would be conceivable in particular if the biologically active molecules which have reached the region of the target cell in the inactive state can no longer achieve any other (unwanted) cells after their activation in this part of the organism, either completely or partially already outside the target cell, for example for transfection into a target cell complex.
Vorteilhaft ist ein Applikationskit, in welchem die einzusetzenden biologisch wirksamen Moleküle mit den gebundenen Peptiden, die vorschlagsgemäß in Hinsicht auf die besonderen Enzyme der Zielzellen ausgewählte Aminosäurensequenzen aufweisen, bereitgestellt werden. Der Applikationskit sollte in Ampullenform alle notwendigen Inhaltsstoffe, in zweckmäßiger Weise auch eine Auswahl geeigneter Transfektionssysteme (wie Nanopartikel oder Lipide), sonstige Zusatzstoffe (wie Antikörper, Liganden und Polyethylenglycol) sowie eine oder mehrere Sonden bzw. Spritzen mit Kanüle zur Injektion der Mischung aus den Ampulleninhalten in das die Zielzellen aufweisende Medium enthalten. Gemäß einer beiliegenden Anwendungsanleitung mit einer Gegenüberstellung der auswählbaren Peptid-Aminosequenzen zu jeweiligen Enzymen der Zielzellen (vgl. vorstehende Tabelle) kann der Nutzer für den bestimmungsgemäßen Einsatz entsprechende Applikationsmischungen zusammenstellen und zur Anwendung bringen.Advantageous is an application kit in which the biologically active molecules to be used are provided with the bound peptides which have amino acid sequences as proposed with regard to the particular enzymes of the target cells. The application kit should be in ampoule form containing all necessary ingredients, conveniently also a selection of suitable transfection systems (such as nanoparticles or lipids), other additives (such as antibodies, ligands and polyethylene glycol) and one or more probes or syringes with cannula for injection of the mixture of the Ampoule contents in containing the target cells containing medium. According to an enclosed application manual with a comparison of the selectable peptide-amino sequences to the respective enzymes of the target cells (see the above table), the user can assemble and apply appropriate application mixtures for the intended use.
Es bietet sich an, einen solcher Applikationskit spezifisch für ausgewählte Zielzellen und Zielgene sowie je nach Anwendungsbereich (in vitro oder in vivo) bereitzustellen. BezugszeichenlisteIt is advisable to provide such an application kit specifically for selected target cells and target genes as well as depending on the field of application (in vitro or in vivo). LIST OF REFERENCE NUMBERS
siRNAsiRNA
2, 3 Peptid2, 3 peptide
4 PNA4 PNA
5 Nanopartikel5 nanoparticles
6 Antikörper, Ligand6 antibodies, ligand
7 Polyethylenglycol (PEG)7 Polyethylene glycol (PEG)
8, 8' Schnittstelle (Bindung) zwischen Peptid und siRNA8, 8 'interface (binding) between peptide and siRNA
9, 10 Enzym der Zielzelle, welches die Verbindung zwischen Peptid und siRJMA zu dessen Aktivierung spaltet9, 10 Enzyme of the target cell which cleaves the link between the peptide and siRJMA to activate it
11 Aminosäuresequenz des Peptids (im Beispiel: spezifische Aminosäuresequenz für das Enzym11 amino acid sequence of the peptide (in the example: specific amino acid sequence for the enzyme
Caspase-4) Caspase-4)
Claims
Priority Applications (7)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| DE112008001019T DE112008001019A5 (en) | 2007-02-15 | 2008-02-13 | Biologically active molecules, in particular based on PNA and siRNA, methods for their cell-specific activation and application kit for administration |
| CA2678044A CA2678044C (en) | 2007-02-15 | 2008-02-13 | Biologically active molecules, particularly based on pna and sirna, method for the cell-specific activation thereof, and application kit to be administered |
| DE502008002284T DE502008002284D1 (en) | 2007-02-15 | 2008-02-13 | BIOLOGICALLY EFFECTIVE MOLECULES, ESPECIALLY BASED ON PNA AND SIRNA, PROCESS FOR THEIR CELL-SPECIFIC ACTIVATION, AND APPLICATION KIT FOR ADMINISTRATION |
| AT08706889T ATE495254T1 (en) | 2007-02-15 | 2008-02-13 | BIOLOGICALLY EFFECTIVE MOLECULES, IN PARTICULAR BASED ON PNA AND SIRNA, METHOD FOR THEIR CELL-SPECIFIC ACTIVATION AND APPLICATION KIT FOR ADMINISTRATION |
| US12/449,419 US9347060B2 (en) | 2007-02-15 | 2008-02-13 | Biologically active molecules, particularly based on PNA and siRNA, method for the cell-specific activation thereof, and application kit to be administered |
| EP08706889A EP2121922B1 (en) | 2007-02-15 | 2008-02-13 | Biologically active molecules, particularly based on pna and sirna, method for the cell-specific activation thereof, and application kit to be administered |
| US13/255,033 US9315808B2 (en) | 2008-02-13 | 2010-03-12 | Cell-specifically effective molecules on the basis of siRNA and application kits for the production thereof and use thereof |
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| DE102007008596A DE102007008596B4 (en) | 2007-02-15 | 2007-02-15 | Biologically active molecules based on PNA and siRNA, methods for their cell-specific activation and application kit for administration |
| DE102007008596.8 | 2007-02-15 |
Related Child Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| US12/449,419 A-371-Of-International US9347060B2 (en) | 2007-02-15 | 2008-02-13 | Biologically active molecules, particularly based on PNA and siRNA, method for the cell-specific activation thereof, and application kit to be administered |
| US13/255,033 Continuation US9315808B2 (en) | 2008-02-13 | 2010-03-12 | Cell-specifically effective molecules on the basis of siRNA and application kits for the production thereof and use thereof |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| WO2008098569A2 true WO2008098569A2 (en) | 2008-08-21 |
| WO2008098569A3 WO2008098569A3 (en) | 2009-03-26 |
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ID=39628195
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PCT/DE2008/000279 Ceased WO2008098569A2 (en) | 2007-02-15 | 2008-02-13 | Biologically active molecules, particularly based on pna and sirna, method for the cell-specific activation thereof, and application kit to be administered |
Country Status (6)
| Country | Link |
|---|---|
| US (1) | US9347060B2 (en) |
| EP (1) | EP2121922B1 (en) |
| AT (1) | ATE495254T1 (en) |
| CA (1) | CA2678044C (en) |
| DE (3) | DE102007008596B4 (en) |
| WO (1) | WO2008098569A2 (en) |
Cited By (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| DE102009043743A1 (en) | 2009-03-13 | 2010-09-16 | Friedrich-Schiller-Universität Jena | Cell-specific molecules based on siRNA as well as application kits for their production and use |
| WO2011085720A1 (en) | 2010-01-14 | 2011-07-21 | Universitätsklinikum Jena | Biologically active molecules for influencing virus-, bacteria-, parasite-infected cells and/or tumor cells and method for the use thereof |
| DE102010009445A1 (en) | 2010-02-25 | 2011-08-25 | Universitätsklinikum Jena, 07743 | Expression vector comprising promoter, interfaces to insert use-specific gene sequence and genetic information expressing enzyme, useful to express peptide-inhibited small interfering RNA cleaving enzyme, preferably protease or peptidase |
| WO2011150921A3 (en) * | 2010-06-04 | 2012-04-19 | Friedrich-Schiller-Universität Jena | Biologically active molecules that are based on sirna and that can be activated in a cell-specific manner, method for activating same, and application kit for administration |
| WO2012098234A1 (en) | 2011-01-21 | 2012-07-26 | Friedrich-Schiller-Universität Jena | Biologically active nucleotide molecules for selectively killing off cells, use thereof, and application kit |
| DE102012022596A1 (en) | 2012-11-15 | 2014-05-15 | Friedrich-Schiller-Universität Jena | New cell-specific effective nucleotide molecules and application kit for their application |
| DE102013003869A1 (en) | 2013-02-27 | 2014-08-28 | Friedrich-Schiller-Universität Jena | A method for the targeted killing of cells by mRNA binding aligned nucleotide molecules and nucleotide molecules and application kit for such use |
| WO2016023974A1 (en) | 2014-08-14 | 2016-02-18 | Friedrich-Schiller-Universität Jena | Peptide for use in the reduction of side effects in the form of immunostimulatory reactions/effects |
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| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| DE102007008596B4 (en) | 2007-02-15 | 2010-09-02 | Friedrich-Schiller-Universität Jena | Biologically active molecules based on PNA and siRNA, methods for their cell-specific activation and application kit for administration |
| US8344116B2 (en) * | 2008-03-17 | 2013-01-01 | Case Western Reserve University | Polymers and complexes for delivery of nucleic acids to intracellular targets |
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| US6506559B1 (en) | 1997-12-23 | 2003-01-14 | Carnegie Institute Of Washington | Genetic inhibition by double-stranded RNA |
| US6589503B1 (en) * | 1998-06-20 | 2003-07-08 | Washington University | Membrane-permeant peptide complexes for medical imaging, diagnostics, and pharmaceutical therapy |
| IL129427A0 (en) * | 1999-04-13 | 2000-02-17 | Yeda Res & Dev | Preparation of biologically active molecules |
| RU2322500C2 (en) | 2000-12-01 | 2008-04-20 | Макс-Планк-Гезелльшафт Цур Фердерунг Дер Виссеншафтен Е.Ф. | Small rna molecules mediating rna interference |
| SE0201863D0 (en) * | 2002-06-18 | 2002-06-18 | Cepep Ab | Cell penetrating peptides |
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| WO2007056153A2 (en) | 2005-11-04 | 2007-05-18 | Nastech Pharmaceutical Company Inc. | Peptide-dicer substrate rna conjugates as delivery vehicles for sirna |
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2007
- 2007-02-15 DE DE102007008596A patent/DE102007008596B4/en not_active Expired - Fee Related
-
2008
- 2008-02-13 WO PCT/DE2008/000279 patent/WO2008098569A2/en not_active Ceased
- 2008-02-13 AT AT08706889T patent/ATE495254T1/en active
- 2008-02-13 US US12/449,419 patent/US9347060B2/en active Active
- 2008-02-13 DE DE502008002284T patent/DE502008002284D1/en active Active
- 2008-02-13 EP EP08706889A patent/EP2121922B1/en active Active
- 2008-02-13 CA CA2678044A patent/CA2678044C/en active Active
- 2008-02-13 DE DE112008001019T patent/DE112008001019A5/en not_active Withdrawn
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| IKEDA: "Ligand-Targeted Delivery of Therapeutic siRNA", PHARMACEUTICAL RESEARCH, vol. 23, no. 8, August 2006 (2006-08-01), XP002519467, DOI: doi:10.1007/s11095-006-9001-x |
| QN NGUYEN ET AL.: "Light controllable siRNAs regulate gene suppression and phenotypes in cells", BIOCHIM BIOPHYS ACTA, 2006 |
| RAYMOND M. ET AL.: "Nucleic Acids Resarch", vol. 32, 1 January 2009, OXFORT UNIVERSITY PRESS, article "Cancer siRNA therapy by tumor selctive delivery with ligand-targeted sterically stabilized nanoparticle", pages: 149 |
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| WO2010102615A1 (en) * | 2009-03-13 | 2010-09-16 | Poehlmann Tobias | Cell-specifically effective molecules on the basis of sirna and application kits for the production thereof and use thereof |
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Also Published As
| Publication number | Publication date |
|---|---|
| CA2678044C (en) | 2015-06-30 |
| US20100009446A1 (en) | 2010-01-14 |
| CA2678044A1 (en) | 2008-08-21 |
| DE112008001019A5 (en) | 2010-01-21 |
| WO2008098569A3 (en) | 2009-03-26 |
| DE102007008596A1 (en) | 2008-08-21 |
| ATE495254T1 (en) | 2011-01-15 |
| EP2121922B1 (en) | 2011-01-12 |
| DE102007008596B4 (en) | 2010-09-02 |
| EP2121922A2 (en) | 2009-11-25 |
| US9347060B2 (en) | 2016-05-24 |
| DE502008002284D1 (en) | 2011-02-24 |
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