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WO2007139999A3 - Collaborative curation of knowledge from text and abstracts - Google Patents

Collaborative curation of knowledge from text and abstracts Download PDF

Info

Publication number
WO2007139999A3
WO2007139999A3 PCT/US2007/012624 US2007012624W WO2007139999A3 WO 2007139999 A3 WO2007139999 A3 WO 2007139999A3 US 2007012624 W US2007012624 W US 2007012624W WO 2007139999 A3 WO2007139999 A3 WO 2007139999A3
Authority
WO
WIPO (PCT)
Prior art keywords
curation
information
knowledge
client computer
abstracts
Prior art date
Application number
PCT/US2007/012624
Other languages
French (fr)
Other versions
WO2007139999A2 (en
Inventor
Chitta Baral
Original Assignee
Univ Arizona State
Chitta Baral
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Univ Arizona State, Chitta Baral filed Critical Univ Arizona State
Publication of WO2007139999A2 publication Critical patent/WO2007139999A2/en
Publication of WO2007139999A3 publication Critical patent/WO2007139999A3/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/30—Information retrieval; Database structures therefor; File system structures therefor of unstructured textual data
    • G06F16/34—Browsing; Visualisation therefor
    • G06F16/345—Summarisation for human users
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
    • G16H70/00—ICT specially adapted for the handling or processing of medical references
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics

Landscapes

  • Engineering & Computer Science (AREA)
  • Theoretical Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Medical Informatics (AREA)
  • Databases & Information Systems (AREA)
  • Biophysics (AREA)
  • Public Health (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioethics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Epidemiology (AREA)
  • Primary Health Care (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Data Mining & Analysis (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Document Processing Apparatus (AREA)
  • Computer And Data Communications (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Information Transfer Between Computers (AREA)

Abstract

A networked system is disclosed that operates to facilitate collaborative curation, particularly of biomedical knowledge from biomedical text and abstracts. When a researcher uses a client computer to access a reference in a database, such as the PubMed database, the client computer automatically connects to a curation server- such as CBioC, and attempts to locate existing curated knowledge regarding that reference. Absent existing curated knowledge, the curation server retrieves a copy of the references for itself and automatically extracts curation information through textual analysis of the reference. The curation information is sent to and displayed by the client computer. The user may be permitted to vote about the correctness of the displayed information, to revise the information, and/or to add new information regarding the reference. This new or revised information is stored by the curation server for later access.
PCT/US2007/012624 2006-05-25 2007-05-25 Collaborative curation of knowledge from text and abstracts WO2007139999A2 (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US80839106P 2006-05-25 2006-05-25
US60/808,391 2006-05-25

Publications (2)

Publication Number Publication Date
WO2007139999A2 WO2007139999A2 (en) 2007-12-06
WO2007139999A3 true WO2007139999A3 (en) 2008-08-28

Family

ID=38779272

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/US2007/012624 WO2007139999A2 (en) 2006-05-25 2007-05-25 Collaborative curation of knowledge from text and abstracts

Country Status (1)

Country Link
WO (1) WO2007139999A2 (en)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2939463A1 (en) * 2014-02-14 2015-08-20 Medaware Systems, Inc. Systems and methods for biomedical research database development and uses thereof
US20150261859A1 (en) * 2014-03-11 2015-09-17 International Business Machines Corporation Answer Confidence Output Mechanism for Question and Answer Systems
US9628551B2 (en) 2014-06-18 2017-04-18 International Business Machines Corporation Enabling digital asset reuse through dynamically curated shared personal collections with eminence propagation
US10176157B2 (en) 2015-01-03 2019-01-08 International Business Machines Corporation Detect annotation error by segmenting unannotated document segments into smallest partition

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6778979B2 (en) * 2001-08-13 2004-08-17 Xerox Corporation System for automatically generating queries

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6778979B2 (en) * 2001-08-13 2004-08-17 Xerox Corporation System for automatically generating queries

Also Published As

Publication number Publication date
WO2007139999A2 (en) 2007-12-06

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