WO2006042478A1 - Small-molecule inhibitors of coronaviral main protease, their preparation and use - Google Patents
Small-molecule inhibitors of coronaviral main protease, their preparation and use Download PDFInfo
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- WO2006042478A1 WO2006042478A1 PCT/CN2005/001748 CN2005001748W WO2006042478A1 WO 2006042478 A1 WO2006042478 A1 WO 2006042478A1 CN 2005001748 W CN2005001748 W CN 2005001748W WO 2006042478 A1 WO2006042478 A1 WO 2006042478A1
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K5/00—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof
- C07K5/02—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing at least one abnormal peptide link
- C07K5/0205—Peptides containing up to four amino acids in a fully defined sequence; Derivatives thereof containing at least one abnormal peptide link containing the structure -NH-(X)3-C(=0)-, e.g. statine or derivatives thereof
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P11/00—Drugs for disorders of the respiratory system
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P31/00—Antiinfectives, i.e. antibiotics, antiseptics, chemotherapeutics
- A61P31/12—Antivirals
- A61P31/14—Antivirals for RNA viruses
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D207/00—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom
- C07D207/02—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom
- C07D207/18—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having one double bond between ring members or between a ring member and a non-ring member
- C07D207/22—Heterocyclic compounds containing five-membered rings not condensed with other rings, with one nitrogen atom as the only ring hetero atom with only hydrogen or carbon atoms directly attached to the ring nitrogen atom having one double bond between ring members or between a ring member and a non-ring member with hetero atoms or with carbon atoms having three bonds to hetero atoms with at the most one bond to halogen, e.g. ester or nitrile radicals, directly attached to ring carbon atoms
- C07D207/24—Oxygen or sulfur atoms
- C07D207/26—2-Pyrrolidones
- C07D207/263—2-Pyrrolidones with only hydrogen atoms or radicals containing only hydrogen and carbon atoms directly attached to other ring carbon atoms
- C07D207/27—2-Pyrrolidones with only hydrogen atoms or radicals containing only hydrogen and carbon atoms directly attached to other ring carbon atoms with substituted hydrocarbon radicals directly attached to the ring nitrogen atom
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07D—HETEROCYCLIC COMPOUNDS
- C07D413/00—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms
- C07D413/02—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings
- C07D413/12—Heterocyclic compounds containing two or more hetero rings, at least one ring having nitrogen and oxygen atoms as the only ring hetero atoms containing two hetero rings linked by a chain containing hetero atoms as chain links
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K38/00—Medicinal preparations containing peptides
Definitions
- the present invention provides a series of small molecule inhibitors designed based on the crystal structure of SARS coronavirus main protease, a preparation method thereof, a pharmaceutical composition comprising the same, and use thereof for preparing a medicament for treating or preventing various coronavirus infections .
- Background technique
- SARS Coronavirus A new type of coronavirus has been identified as the culprit of the Severe Acute Respiratory Sydrome (SARS) and is named SARS Coronavirus (abbreviated as SARS-CoV).
- SARS coronavirus belongs to the genus “Nidovirales”, “Coronaviridae”, and “Coronavirus” in the species classification. It is a new variant of the coronavirus family, with a total length of 29,736 bp (Urbani Strain) o SARS is a potent infectious disease that poses a great threat to humans. There are no specific drugs and vaccines available.
- the coronavirus family includes four types (Group).
- Type I includes porcine transmissible gastroenteritis virus (TGEV), human coronavirus (HCoV) strain 229E, and feline infectious peritonitis virus (FIPV).
- Type II includes Bovine coronavirus (BCoV), Murine hepatitis virus (MHV), etc.
- Type III currently includes only three viruses, one of which is called avian infectious.
- Avian Infectious Bronchitis Virus abbreviated as AIBV
- SARS-CoV belongs to type IV.
- Various coronaviruses pose a huge threat to the health of people and animals.
- the genome of the SARS coronavirus encodes two large replicase polyproteins (replicase polyproteins) ppla (486 kDa) and pplab (790 kDa), these two proteins are encoded by the genome of 2/3 to 3/4 of the coronavirus. These two proteins are hydrolyzed to produce many functional subunits of the viral replication complex.
- the main proteolytic enzyme of SARS coronavirus (main protease, abbreviated as M pro , molecular weight 33.8 kDa, sometimes called 3C-Like Protein) plays a very important role.
- the main protease is also a segment of ppla and pplab, its release is achieved by autocatalytic hydrolysis, and autocatalytic hydrolysis occurs at the Gln S er , Al a ) site beside the protease, by trans-splicing (bi-molecular reaction) carry out.
- the replicase polyproteins ppla and pplab are hydrolyzed into more than a dozen functional peptides, which further play a role. If it can inhibit the hydrolysis of SARS coronavirus main protease, it will effectively resist the infection of SARS coronavirus. Therefore, SARS coronavirus primary protease is an ideal target for anti-SARS drug design. Summary of invention
- Another object of the present invention is to provide a process for the preparation of the small molecule inhibitor.
- the invention provides a compound of formula (I): or a pharmaceutically acceptable salt or solvate thereof:
- U is Wherein X is NH or CH 2; R, groups selected from the group consisting of: optionally substituted by halogen (6 ⁇ 0 ⁇ (preferably C 3 ⁇ C 6) alkyl with a carbonyl group, C 3 ⁇ C 6 cycloalkyl embankment a carbonyl group, optionally substituted by a C 6 ⁇ C 1() aryl group ( ⁇ 05 ⁇ oxycarbonyl, C 6 ⁇ .
- halogen 6 ⁇ 0 ⁇ (preferably C 3 ⁇ C 6) alkyl with a carbonyl group, C 3 ⁇ C 6 cycloalkyl embankment a carbonyl group, optionally substituted by a C 6 ⁇ C 1() aryl group ( ⁇ 05 ⁇ oxycarbonyl, C 6 ⁇ .
- R 2 is selected from the group consisting of: -C 6 (preferably -C 4 )alkyl and C 6 wherein the aryl group is optionally substituted by halogen, optionally substituted by C 6 -C 1Q aryl ⁇ C 1Q aryl
- R 3 is selected from the group consisting of: -C 6 (preferably C, ⁇ C 4 ) wherein the aryl group is optionally substituted by halogen, optionally substituted by C 6 -C 1 () aryl a fluorenyl group, optionally ( ⁇ ( 4 alkyl-substituted C 6 -C 1Q aryl; group selected from the group consisting of: wherein the aryl group is optionally substituted by halogen, optionally C 6 -C 1 Q aryl substituted ⁇ C 6 (preferably ( ⁇ ( fluorenyl, C, optional
- the invention also provides a process for the preparation of a compound of formula (I), which comprises the steps of:
- step (b) condensing the product of step (a) with a compound of formula (III) in the presence of a condensing reagent to provide a compound of formula (I),
- the definitions of the formulas, R 2 , R 4 and U are the same as defined in the above formula (I).
- the invention provides a pharmaceutical composition comprising a compound of the above formula (I), or a pharmaceutically acceptable salt or solvate thereof, and one or more pharmaceutically acceptable carriers.
- the invention also provides the use of a compound of formula (I) for the manufacture of a medicament for the treatment or prevention of a coronavirus infection.
- the test proves that the compound of the present invention can significantly inhibit the activity of the main protease of coronavirus such as TGEV, HCoV, FIPV, AIBV, SARS-CoV, and has a good application prospect in the preparation of a medicament for treating or preventing coronavirus infection.
- the main protease of coronavirus such as TGEV, HCoV, FIPV, AIBV, SARS-CoV
- Figure 1 is a surface view of the small molecule inhibitor N1 of the present invention combined with SARS-CoV M pro monomer A;
- Figure 2 is a graph showing the activity of the small molecule inhibitor N1 of the present invention and the SARS-CoV M pro monomer A Electronic density map of sexual pockets;
- Figure 3 shows the small molecule inhibitors Nl, N2, N3 and N4 of the present invention versus SARS-CoV M p r .
- Inhibitory activity curve wherein SARS-3CL represents SARS coronavirus main protease, ie SARS-CoV M p r° ;
- FIG 4 is a graph showing the inhibitory activity curve of the small molecule inhibitor N1 of the present invention against the main protease of Transmissible Gastroenteritis Virus (TGEV) (abbreviated as TGEV-3CL);
- TGEV Transmissible Gastroenteritis Virus
- Figure 5 is a graph showing the inhibitory activity curve of the small molecule inhibitor N1 of the present invention against the human coronavirus (HCoV) 229 main protease (abbreviated as HCoV-3CL in the figure);
- HoV human coronavirus
- HCoV-3CL main protease
- FIG. 6 is a graph showing the inhibitory activity curve of the small molecule inhibitor N1 of the present invention against Feline Infectious Peritonitis Virus (FIPV) main protease (abbreviated as FIPV_3CL in the figure);
- FIPV_3CL Feline Infectious Peritonitis Virus
- Fig. 7 is a graph showing the inhibitory activity curve of the small molecule inhibitor N1 of the present invention against the Avian Infectious Bronchitis Virus (AIBV) main protease (abbreviated as AIBV-3CL). Detailed description of the invention
- Nl is particularly preferred small molecule inhibitors of the present invention, the structural formulas of which are:
- main proteolytic enzymes of SARS coronavirus are used herein to refer to the main SARS coronavirus. Proteolytic enzymes.
- C, ⁇ C 6 fluorenyl means a straight or branched alkyl group having from 1 to 6 carbon atoms, which includes but is not limited to: methyl, ethyl, n-propyl, isopropyl , n-butyl, isobutyl Base, tert-butyl, n-pentyl, n-hexyl, and the like.
- ⁇ 0 ⁇ alkyl means a straight or branched fluorenyl group having from 1 to 4 carbon atoms, which includes: methyl, ethyl, n-propyl, isopropyl, n-butyl, Isobutyl, tert-butyl and the like.
- C 3 -C 6 cycloalkyl group means a cyclic alkyl group having 3 to 6 carbon atoms, and includes: a cyclopropyl group, a cyclobutyl group, a cyclopentyl group, a cyclohexyl group and the like.
- C 6 -C 1Q aryl means a hetero atom-free (monocyclic and bicyclic) aromatic ring having from 6 to 10 carbon atoms, which includes: phenyl, naphthyl such as 1-naphthyl or 2-naphthyl.
- the "C 5 -C 1Q heteroaryl group” means an aromatic 5- to 10-membered (monocyclic or bicyclic) heterocyclic ring containing 1 to 3 hetero atoms each selected from an oxygen atom, a sulfur atom and a nitrogen atom, and includes: Oxazolyl, isoxazolyl, furyl, imidazolyl, pyridyl, quinolyl, isoquinolyl and benzimidazolyl, and the like.
- Halogen means fluorine, chlorine, bromine and iodine.
- Fluorobenzyl includes p-fluorobenzyl, m-fluorobenzyl, o-fluorobenzyl and the like.
- Fluorophenyl includes p-fluorophenyl, m-fluorophenyl, o-fluorophenyl and the like.
- Methods includes p-methylphenyl, m-methylphenyl, o-methylphenyl and the like. Abbreviation
- Pr represents an isopropyl group
- Et represents an ethyl group
- ⁇ represents a phenyl group
- Boc represents a tert-butoxycarbonyl group
- THF trifluoroacetic acid
- DMF tetrahydrofuran
- DSO dimethyl sulfoxide
- PhH benzene
- ipr 2 NEt stands for two Isopropylethylamine
- NEt 3 stands for triethylamine
- DCC dicyclohexylcarbodiimide
- DIEA diisopropylethylamine
- DMAP stands for 4- ⁇ , ⁇ -dimethyl Aminopyridine
- EDCI stands for 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride
- HATU stands for N-[(dimethylamino)(3//-1 , 2,3-triazolo(4,5-b)pyridin-3-oxy)methylene]methylammonium hex
- a group consisting of the following groups is selected: trifluoromethylcarbonyl, tert-butoxycarbonyl, isoxazolylcarbonyl, furyl
- R 2 is methyl, isopropyl, phenyl, benzyl, fluorobenzyl
- R 3 is selected from the group consisting of methyl, isopropyl, benzyl, fluorobenzyl (especially Fluorobenzyl), phenyl and methylphenyl (especially p-methylphenyl)
- R4 is selected from the group consisting of ethyl, phenyl, benzyl, methylphenyl (especially Rhenyl) and fluorobenzyl
- R 5 is isobutyl, phenyl, benzyl, methylphenyl (especially p-methylphenyl), fluorobenzyl (especially p-fluorobenzyl) and Fluorophenyl.
- the compound of the present invention may be in the form of a pharmaceutically acceptable acid addition salt thereof, which may be combined with a mineral acid such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, etc., and an organic acid such as acetic acid, trifluoroacetic acid, Propionic acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, a salt formed of toluenesulfonic acid, salicylic acid or the like.
- a mineral acid such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, etc.
- an organic acid such as acetic acid, trifluoroacetic acid, Propionic acid, glycolic
- the preparation method of the compound of the formula (I) provided by the invention comprises the following steps:
- step (b) condensing the product of step (a) with a compound of formula (III) in the presence of a condensing reagent to provide a compound of formula (I),
- R 2 , R 4 and U are the same as defined in the above formula (I).
- the synthesis of compounds of the formula ( ⁇ ) can be found in the literature: Qingping Tian, Naresh K. Nayyar, Srinivasan Babu, Lijian Chen, Junhua Tao, Steven Lee, Anthony Tibbetts, Terence Moran, Jason Liou, Ming Guo and Timothy P. Kennedy Ze i. 2001, 42, 6808-6809.
- the synthesis of compounds of formula (III) can be found in the literature: Dawei Ma, Weiqing Xie, Bin Zou, Qiong Lei and Duanqing Pei Tetrahedron Lett. 2004, 45, 8103-8105.
- the compound of the formula ( ⁇ ) is reacted with an acid (for example, a mixture of dichloromethane and trifluoroacetic acid in a volume ratio of 1 to 4:1) in an organic solvent at room temperature for 1 to 4 Hour solvent; dissolve the product with a compound of formula (III) in an aprotic solvent (eg CH 2 C1 2 , THF, CHCI3), add a condensation reagent (eg HATU, HBTU or EDCI), then add an organic base ( The reaction is carried out at room temperature for 8 to 24 hours, such as ipr 2 Net or NEt 3 ), to give a compound of the formula (I).
- an acid for example, a mixture of dichloromethane and trifluoroacetic acid in a volume ratio of 1 to 4:1
- an organic solvent at room temperature for 1 to 4 Hour solvent
- aprotic solvent eg CH 2 C1 2 , THF, CHCI3
- a condensation reagent eg HATU, HBTU or
- arylcarbonyl and optionally substituted by C, ⁇ C 4 alkyl C 5 ⁇ d.
- the compound of formula (I) to be derivatized is reacted in an organic solvent with an acid (for example, a mixture of dichloromethane and trifluoroacetic acid in a volume ratio of from 1 to 4:1) at room temperature. 1 ⁇ 4 hours; remove the solvent, dissolve the product with the carboxylic acid R-OH in an aprotic solvent (such as CH 2 C1 2 , THF, CHC1 3 ), add a condensation reagent (such as HATU, HBTU or EDCI), then add An organic base (e.g., ipr 2 Net or NEt 3 ) is allowed to react at room temperature for 8 to 24 hours to provide a series of derivatives of the compound of formula (I).
- an organic solvent for example, a mixture of dichloromethane and trifluoroacetic acid in a volume ratio of from 1 to 4:1
- the acid described above is preferably trifluoroacetic acid or hydrochloric acid; a preferred organic solvent is selected from the group consisting of CH 2 C1 2 , tetrahydrofuran, CHC1 3 , N,N-dimethylformamide and dioxane Ring; preferred aprotic solvent is selected from the group consisting of CH 2 C1 2 , tetrahydrofuran, CHC1 3 , hydrazine, hydrazine-dimethylformamide, dimethyl sulfoxide and benzene; preferred condensation reagents are selected from the following members Groups constituted: HATU, HBTU and EDCI; preferred organic bases are selected from the group consisting of diisopropylethylamine and triethylamine.
- compositions of the present invention comprise a small molecule inhibitor of the invention together with one or more pharmaceutically acceptable carriers.
- the compositions may take a wide variety of formulations, and the pharmaceutically acceptable carrier may be either solid or liquid.
- Solid form preparations include powders, tablets, dispersible granules and capsules.
- the solid carrier can be one or more substances which may also act as a diluent, a flavoring agent, a solubilizer, a lubricant, a suspending agent, a binder or a tablet disintegrating agent; it may also be an encapsulating material.
- the preparation of various preparations can be carried out in accordance with a conventional method in the field of pharmacy.
- the pharmaceutical preparation is in unit dosage form, such as a packaged preparation, the package containing discrete amounts of preparation such as packaged tablets, capsules and vials or powders in ampoules.
- the dosage can vary depending on the needs of the patient, the severity of the disease, and the particular compound employed. For convenience, the total daily dose can be divided into several doses throughout the day. The skilled person in the medical field is able to determine the appropriate dosage depending on the specific situation.
- specific embodiments of the present invention will be described below in conjunction with the accompanying drawings. In describing the embodiments, well-known experimental methods, apparatus, reagents, materials, and the like have not been described in detail to avoid the disadvantages of the present invention.
- the substrate is dissolved in 2 ml CH 2 C1 2 and 12 mg is added. Then add 48 ⁇ ipr 2 NEt and then add 44 mg HATU. The reaction at room temperature for 12 hours, washed with 1 M HC saturated NaHCO ⁇ solution, saturated brine, dried with Na 2 S0 4. Over The solvent was evaporated under reduced pressure and flash column chromatography afforded
- Example 1 and Example 2 can be briefly summarized by the following reaction formula:
- Boc-depleted substrate was dissolved in 2 ml of CH 2 C1 2 , 62 mg of compound 11 was added, and 97 ⁇ M of 'P ⁇ NEt was added, followed by 75 mg of HATU.
- N1 binds to the substrate binding pocket of the enzyme.
- C 3 in N1 forms a covalent bond with S 7 of A145-Cys having a bond length of 1.8A.
- the carbonyl oxygen in the N1 ester group forms a hydrogen bond with the amino group on the A145-Cys main carbon chain; the ethyl group in the ester forms a hydrophobic interaction with the side chains of A27-Len His-A41 and Thr-A25.
- the oxygen in the five-membered ring of the lactam forms a 2.6A hydrogen bond with NE2 of His-163.
- a water molecule near the lactam ring can form a 2.6A 3.2A, 2.6 person and 2.7 human hydrogen bond with NE2 of N His-172 on the lactam ring of N1 and carbonyl oxygen of 140-Phe and Ser-Bl, respectively. , allowing the lactam ring to be firmly bonded in the S1 pocket.
- P1 due to the major protease of the entire coronavirus family The site is very conserved and always appears in the form of Q, therefore, occupying the corresponding substrate binding pocket S1 is a key to inhibiting protease activity.
- the small molecule Leu side chain is easily inserted into the side chain of His-41, Met-49 and Phe-181, and the alkyl moiety of the side chain of Gln-189 and Asp-187. In the hydrophobic pocket.
- the carbonyl oxygen in His-164 forms a hydrogen bond of 2.9A with N in the peptide bond near the ester group side in N1, and the carbonyl oxygen of Val in N1 forms a 2.9A hydrogen bond with N in GKI-A166, Val N in the peptide bond forms a hydrogen bond of 3.0A with the G1U-A166 carbonyl oxygen, and N in the Ala peptide bond in N1 forms a hydrogen bond of 3.2A with the carbonyl oxygen of Thr-190.
- the side chain of Ala is inserted into a hydrophobic pocket consisting of Phe-185, Glu-192, Leu-167, Met-165 side chains.
- the heterocyclic ring at the end of N1 has a hydrophobic interaction with the five-membered ring of Pro-168. All of these covalent bonds, hydrogen bonds, and hydrophobic interactions allow the inhibitor compound N1 to bind tightly to the substrate active pocket of the enzyme, thereby causing inactivation of the enzyme.
- the method for measuring the inhibitory activities of ⁇ 2, ⁇ 3 and ⁇ 4 is basically the same as that of N1.
- Nl, N2, N3 and N4 have inhibitory activities against SARS-CoV M pro , and N1 has the strongest inhibitory activity.
- N1 From the inhibition activity of N1 against other coronavirus main proteases (ie, Fig. 4 to Fig. 7), N1 has an inhibitory activity against the main proteases of TGEV, HCoV, FIPV and AIBV, and the most inhibitory activity against the main protease of TGEV. Strong, under the condition of ⁇ ⁇ , N1 still has inhibitory activity against TGEV main protease.
- TGEV, HCoV, and FIPV belong to the type I (serotype) of the Coronavirus family
- AIBV belongs to type III
- SARS-CoV belongs to type IV. Therefore, it can be inferred that N1 has inhibitory activity against the major protease of the entire coronavirus family.
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Abstract
Description
冠状病毒主蛋白酶的小分子抑制剂、 其制备方法及其应用 Small molecule inhibitor of coronavirus main protease, preparation method thereof and application thereof
技术领域 Technical field
本发明提供基于 SARS 冠状病毒主蛋白酶晶体结构所设计的一 系列小分子抑制剂、其制备方法、包含其的药物组合物及其在制备用 于治疗或者预防各种冠状病毒感染的药物中的用途。 背景技术 The present invention provides a series of small molecule inhibitors designed based on the crystal structure of SARS coronavirus main protease, a preparation method thereof, a pharmaceutical composition comprising the same, and use thereof for preparing a medicament for treating or preventing various coronavirus infections . Background technique
一种新型的冠状病毒目前已经被确认是严重急性呼吸系统综合 征 ( Severe Acute Respiratory Sydrome, 简称为 SARS ) 的元凶, 并被 命名为 SARS冠状病毒 (简称为 SARS-CoV)。 SARS冠状病毒在种 属分类上属于 "Nidovirales" 目、 " Coronaviridae "科、 "Coronavirus" 属。 它是冠状病毒家族中新出现的一个变种, 全长 29,736 bp (Urbani Strain ) o SARS是一种对人类具有巨大威胁的烈性传染病, 目前尚无 特效药及疫苗上市。 A new type of coronavirus has been identified as the culprit of the Severe Acute Respiratory Sydrome (SARS) and is named SARS Coronavirus (abbreviated as SARS-CoV). The SARS coronavirus belongs to the genus "Nidovirales", "Coronaviridae", and "Coronavirus" in the species classification. It is a new variant of the coronavirus family, with a total length of 29,736 bp (Urbani Strain) o SARS is a potent infectious disease that poses a great threat to humans. There are no specific drugs and vaccines available.
根据血清学分类, 冠状病毒家族(冠状病毒属)共包括四种类型 ( Group )。 I 型包括猪传染性胃肠炎病毒 (porcine transmissible gastroenteritis virus,简称为 TGEV)、人冠状病毒 (human coronavirus, 简称为 HCoV) 毒株 229E、 猫传染性腹膜炎病毒 (Feline infectious peritonitis virus, 简称为 FIPV) 等; II 型包括牛冠状病毒 (Bovine coronavirus > 简称为 BCoV)、 鼠肝炎病毒 (Murine hepatitis virus, 简 称为 MHV)等; III型目前只包括三种病毒, 其中一种被称为禽传染 性支气管炎病毒 (Avian Infectious Bronchitis Virus, 简称为 AIBV); SARS-CoV则属于 IV型。 各类冠状病毒对人、 畜的生命健康有巨大 威胁。 According to serological classification, the coronavirus family (Coronavirus) includes four types (Group). Type I includes porcine transmissible gastroenteritis virus (TGEV), human coronavirus (HCoV) strain 229E, and feline infectious peritonitis virus (FIPV). Type II includes Bovine coronavirus (BCoV), Murine hepatitis virus (MHV), etc. Type III currently includes only three viruses, one of which is called avian infectious. Avian Infectious Bronchitis Virus (abbreviated as AIBV); SARS-CoV belongs to type IV. Various coronaviruses pose a huge threat to the health of people and animals.
SARS 冠状病毒的基因组编码了两个大的复制酶多蛋白 (replicase polyproteins) ppla (486 kDa)禾口 pplab (790 kDa), 这两 个蛋白是由占冠状病毒 2/3到 3/4的基因组编码的。 这两个蛋白被水 解后产生病毒复制复合体的很多功能亚基。在这一水解过程中, SARS 冠状病毒的主要蛋白水解酶 (main protease, 简称为主蛋白酶, 缩写 为 Mpro, 分子量 33.8 kDa, 有时也称为 3C-Like Protein) 起到了非常 关键的作用。 主蛋白酶也是 ppla和 pplab中的一段, 它的释放是通 过自催化水解完成的,自催化水解发生在该蛋白酶旁侧的 Gln Ser,Ala) 位点, 通过反式剪接(双分子反应)完成。 在主蛋白酶的作用下, 复 制酶多蛋白 ppla和 pplab被水解成十多个功能肽段, 从而进一步发 挥作用。如果能够抑制 SARS冠状病毒主蛋白酶的水解作用, 那么将 会有效地抵御 SARS冠状病毒对人体的侵染。 因此, SARS冠状病毒 主蛋白酶是抗 SARS药物设计的理想靶标。 发明概述 The genome of the SARS coronavirus encodes two large replicase polyproteins (replicase polyproteins) ppla (486 kDa) and pplab (790 kDa), these two proteins are encoded by the genome of 2/3 to 3/4 of the coronavirus. These two proteins are hydrolyzed to produce many functional subunits of the viral replication complex. In this hydrolysis process, the main proteolytic enzyme of SARS coronavirus (main protease, abbreviated as M pro , molecular weight 33.8 kDa, sometimes called 3C-Like Protein) plays a very important role. The main protease is also a segment of ppla and pplab, its release is achieved by autocatalytic hydrolysis, and autocatalytic hydrolysis occurs at the Gln S er , Al a ) site beside the protease, by trans-splicing (bi-molecular reaction) carry out. Under the action of the main protease, the replicase polyproteins ppla and pplab are hydrolyzed into more than a dozen functional peptides, which further play a role. If it can inhibit the hydrolysis of SARS coronavirus main protease, it will effectively resist the infection of SARS coronavirus. Therefore, SARS coronavirus primary protease is an ideal target for anti-SARS drug design. Summary of invention
本发明的一个目的是提供一种能够有效抑制冠状病毒主蛋白酶 活性的小分子抑制剂。 It is an object of the present invention to provide a small molecule inhibitor capable of effectively inhibiting the activity of a coronavirus main protease.
本发明的另一个目的是提供所述小分子抑制剂的制备方法。 Another object of the present invention is to provide a process for the preparation of the small molecule inhibitor.
本发明的再一目的是提供包含所述小分子抑制剂的药物组合物。 本发明的又一个目的是提供所述小分子抑制剂在制备用于治疗 或者预防冠状病毒感染的药物中的用途。 It is still another object of the present invention to provide a pharmaceutical composition comprising the small molecule inhibitor. It is still another object of the present invention to provide the use of the small molecule inhibitor for the preparation of a medicament for the treatment or prevention of a coronavirus infection.
因此, 在一个方面, 本发明提供下述通式 (I) 的化合物或其药 学可接受的盐或溶剂化物: Thus, in one aspect, the invention provides a compound of formula (I): or a pharmaceutically acceptable salt or solvate thereof:
其中, among them,
U为 , 其中 X为 NH或 CH2; R,选自 由如下基团构成的组: 任选被卤素取代的(^〜06 (优选 C3〜C6) 垸 基羰基、 C3〜C6环垸基羰基、 任选被 C6〜C1()芳基取代的(^〜05垸 氧羰基、 C6〜 。芳基羰基和任选被 (^〜 4垸基取代的 C5〜CW杂芳 基羰基; R2选自由如下基团构成的组:其中芳基任选被卤素取代的任 选被 C6〜C1Q芳基取代的 〜C6 (优选 〜C4)烷基和 C6〜C1Q芳基; R3选自由如下基团构成的组: 其中芳基任选被卤素取代的任选被 C6〜C1 ()芳基取代的 〜C6 (优选 C,〜C4) 垸基、 任选被(^〜( 4烷 基取代的 C6〜C1Q芳基; 选自由如下基团构成的组: 其中芳基任选 被卤素取代的任选被 C6〜C1 Q芳基取代的 〜C6(优选 (^〜( 垸基、 任选被 〜C4垸基取代的 C,。芳基; R5选自由如下基团构成的 组: 其中芳基任选被卤素取代的任选被 C6〜C1 ()芳基取代的 (^〜 6 (优选 (^〜( 4) 垸基、 任选被 〜C4垸基和 /或卤素取代的 C6〜C10 芳基。 U is Wherein X is NH or CH 2; R, groups selected from the group consisting of: optionally substituted by halogen (6 ~ 0 ^ (preferably C 3 ~C 6) alkyl with a carbonyl group, C 3 ~C 6 cycloalkyl embankment a carbonyl group, optionally substituted by a C 6 ~C 1() aryl group (^~05垸 oxycarbonyl, C 6 〜. arylcarbonyl, and optionally C 5 ~C W substituted by (^~ 4 fluorenyl) Arylcarbonyl; R 2 is selected from the group consisting of: -C 6 (preferably -C 4 )alkyl and C 6 wherein the aryl group is optionally substituted by halogen, optionally substituted by C 6 -C 1Q aryl ~C 1Q aryl; R 3 is selected from the group consisting of: -C 6 (preferably C, ~C 4 ) wherein the aryl group is optionally substituted by halogen, optionally substituted by C 6 -C 1 () aryl a fluorenyl group, optionally (^~( 4 alkyl-substituted C 6 -C 1Q aryl; group selected from the group consisting of: wherein the aryl group is optionally substituted by halogen, optionally C 6 -C 1 Q aryl substituted ~C 6 (preferably (^~( fluorenyl, C, optionally substituted by ~C 4 fluorenyl); R 5 is selected from the group consisting of: wherein aryl is optionally Halogen substituted optionally substituted by C 6 ~C 1 () aryl (^~ 6 (preferably (^~( 4 ) Embankment, optionally substituted alkyl with ~C 4 and / or halogen-substituted C 6 ~C 10 aryl group.
在另一方面, 本发明还提供通式 (I) 的化合物的制备方法, 其 包括如下步骤: In another aspect, the invention also provides a process for the preparation of a compound of formula (I), which comprises the steps of:
(a)将式(II)的化合物中氨基的保护基 R6脱除, 其中 选自由 如下基团构成的组:任选被 C6〜C1Q芳基取代的(^〜 6烷氧羰基和任 选被卤素取代的(^〜( 6烷基酰基, 特别是叔丁氧羰基、 三氟乙酰基 或苄氧羰基; (a) removing a protecting group R 6 of an amino group in the compound of the formula (II), which is selected from the group consisting of a group of ( 6 to 6 alkoxycarbonyl groups optionally substituted by a C 6 -C 1Q aryl group; Optionally substituted by halogen (^~( 6 alkyl acyl, especially tert-butoxycarbonyl, trifluoroacetyl or benzyloxycarbonyl;
(b) 在縮合试剂的存在下, 将步骤 (a)的产物与式 (III) 的化合物 缩合, 得到式 (I) 的化合物, (b) condensing the product of step (a) with a compound of formula (III) in the presence of a condensing reagent to provide a compound of formula (I),
(I) (I)
其中, 式 、 R2、 R4和 U的定义与前述式 (I) 中的定义相同。 在另一方面, 本发明还提供药物组合物, 其包含前述通式 (I) 的化合物或其药学可接受的盐或溶剂化物,以及一种或多种药学可接 受的载体。 Wherein, the definitions of the formulas, R 2 , R 4 and U are the same as defined in the above formula (I). In another aspect, the invention provides a pharmaceutical composition comprising a compound of the above formula (I), or a pharmaceutically acceptable salt or solvate thereof, and one or more pharmaceutically acceptable carriers.
在另一方面, 本发明还提供通式 (I) 的化合物在制备用于治疗 或者预防冠状病毒感染的药物中的用途。 In another aspect, the invention also provides the use of a compound of formula (I) for the manufacture of a medicament for the treatment or prevention of a coronavirus infection.
试验证明, 本发明的化合物能够显著抑制 TGEV、 HCoV、 FIPV、 AIBV、 SARS-CoV等冠状病毒主蛋白酶的活性, 在制备用于治疗或 者预防冠状病毒感染的药物方面具有良好的应用前景。 附图的简要说明 The test proves that the compound of the present invention can significantly inhibit the activity of the main protease of coronavirus such as TGEV, HCoV, FIPV, AIBV, SARS-CoV, and has a good application prospect in the preparation of a medicament for treating or preventing coronavirus infection. BRIEF DESCRIPTION OF THE DRAWINGS
附图不一定是成比例的, 其目的仅仅在于更好地解释本发明, 以 便于读者理解。将附图与具体实施方式结合在一起考虑, 可以更好地 理解本发明。 The drawings are not necessarily to scale unless the The invention may be better understood by considering the drawings in conjunction with the specific embodiments.
图 1是本发明的小分子抑制剂 N1与 SARS-CoV Mpro单体 A结合 的表面图; Figure 1 is a surface view of the small molecule inhibitor N1 of the present invention combined with SARS-CoV M pro monomer A;
图 2是本发明的小分子抑制剂 N1与 SARS-CoV Mpro单体 A的活 性口袋结合的电子密度图; Figure 2 is a graph showing the activity of the small molecule inhibitor N1 of the present invention and the SARS-CoV M pro monomer A Electronic density map of sexual pockets;
图 3 示出了本发明的小分子抑制剂 Nl、 N2、 N3 和 N4 对 SARS-CoV Mpr。的抑制活性曲线, 其中, SARS—3CL代表 SARS冠状 病毒主蛋白酶, 即 SARS-CoV Mpr° ; Figure 3 shows the small molecule inhibitors Nl, N2, N3 and N4 of the present invention versus SARS-CoV M p r . Inhibitory activity curve, wherein SARS-3CL represents SARS coronavirus main protease, ie SARS-CoV M p r° ;
图 4 示出了本发明的小分子抑制剂 N1 对传染性胃肠炎病毒 (Transmissible Gastroenteritis Viruses, 简称为 TGEV)主蛋白酶(图 中简称为 TGEV— 3CL) 的抑制活性曲线; Figure 4 is a graph showing the inhibitory activity curve of the small molecule inhibitor N1 of the present invention against the main protease of Transmissible Gastroenteritis Virus (TGEV) (abbreviated as TGEV-3CL);
图 5 示出了本发明的小分子抑制剂 N1 对人冠状病毒 (Human Coronavirus, HCoV) 229主蛋白酶 (图中简称为 HCoV— 3CL) 的抑 制活性曲线; Figure 5 is a graph showing the inhibitory activity curve of the small molecule inhibitor N1 of the present invention against the human coronavirus (HCoV) 229 main protease (abbreviated as HCoV-3CL in the figure);
图 6 示出了本发明的小分子抑制剂 N1 对猫传染性腹膜炎病毒 (Feline Infectious Peritonitis Virus, FIPV) 主蛋白酶 (图中简称为 FIPV_3CL) 的抑制活性曲线; Figure 6 is a graph showing the inhibitory activity curve of the small molecule inhibitor N1 of the present invention against Feline Infectious Peritonitis Virus (FIPV) main protease (abbreviated as FIPV_3CL in the figure);
图 7示出了本发明的小分子抑制剂 N1对禽传染性支气管炎病毒 (Avian Infectious Bronchitis Virus, AIBV) 主蛋白酶 (图中简称为 AIBV—3CL) 的抑制活性曲线。 发明的详细描述 Fig. 7 is a graph showing the inhibitory activity curve of the small molecule inhibitor N1 of the present invention against the Avian Infectious Bronchitis Virus (AIBV) main protease (abbreviated as AIBV-3CL). Detailed description of the invention
术语定义 Definition of Terms
为了叙述上的方便, 本文中使用了一些特定的术语, 下面逐一对 其进行解释。 For the convenience of the description, some specific terms are used herein, which are explained one by one below.
"Nl "、 "N2"、 "N3"和 "N4"是本发明特别优选的小分子抑制 剂, 其结构式分别为: "Nl", "N2", "N3" and "N4" are particularly preferred small molecule inhibitors of the present invention, the structural formulas of which are:
N4的结构式 Structural formula of N4
本文中所使用的术语 " SARS 冠状病毒的主要蛋白水解酶"、 "SARS-CoV Mpro"、 " SARS-CoV 3CLpro"、 "SARS冠状病毒主蛋白 酶"等, 都是指 SARS冠状病毒的主要蛋白水解酶。 The terms "main proteolytic enzymes of SARS coronavirus", "SARS-CoV M pro ", "SARS-CoV 3CL pro ", "SARS coronavirus main protease", etc., are used herein to refer to the main SARS coronavirus. Proteolytic enzymes.
"C,〜C6垸基"是指碳原子数在 1到 6之间的直链或带支链的烷 基, 其包括但不限于: 甲基、 乙基、 正丙基、 异丙基、 正丁基、 异丁 基、 叔丁基、 正戊基、 正己基等。 "C,~C 6 fluorenyl" means a straight or branched alkyl group having from 1 to 6 carbon atoms, which includes but is not limited to: methyl, ethyl, n-propyl, isopropyl , n-butyl, isobutyl Base, tert-butyl, n-pentyl, n-hexyl, and the like.
" 〜0^烷基"是指碳原子数在 1到 4之间的直链或带支链的垸 基, 其包括: 甲基、 乙基、 正丙基、 异丙基、 正丁基、 异丁基、 叔丁 基等。 "~0^alkyl" means a straight or branched fluorenyl group having from 1 to 4 carbon atoms, which includes: methyl, ethyl, n-propyl, isopropyl, n-butyl, Isobutyl, tert-butyl and the like.
"C3〜C6环烷基"是指碳原子数在 3到 6之间的环状烷基,其包 括: 环丙基、 环丁基、 环戊基和环己基等。 The "C 3 -C 6 cycloalkyl group" means a cyclic alkyl group having 3 to 6 carbon atoms, and includes: a cyclopropyl group, a cyclobutyl group, a cyclopentyl group, a cyclohexyl group and the like.
"C6〜C1Q芳基"是指碳原子数在 6到 10之间的不含杂原子的 (单 环和双环)的芳环, 其包括: 苯基、 萘基如 1-萘基或 2-萘基。 "C 6 -C 1Q aryl" means a hetero atom-free (monocyclic and bicyclic) aromatic ring having from 6 to 10 carbon atoms, which includes: phenyl, naphthyl such as 1-naphthyl or 2-naphthyl.
"C5〜C1Q杂芳基"是指含有 1〜3个各自选自氧原子、硫原子及 氮原子的杂原子的芳族 5〜10元 (单环或双环)杂环,其包括:噁唑基、 异噁唑基、 呋喃基、 咪唑基、 吡啶基、 喹啉基、 异喹啉基和苯并咪唑 基等。 The "C 5 -C 1Q heteroaryl group" means an aromatic 5- to 10-membered (monocyclic or bicyclic) heterocyclic ring containing 1 to 3 hetero atoms each selected from an oxygen atom, a sulfur atom and a nitrogen atom, and includes: Oxazolyl, isoxazolyl, furyl, imidazolyl, pyridyl, quinolyl, isoquinolyl and benzimidazolyl, and the like.
"卤素"是指氟、 氯、 溴和碘。 "Halogen" means fluorine, chlorine, bromine and iodine.
"氟代苄基"包括对氟苄基、 间氟苄基、 邻氟苄基等。 "Fluorobenzyl" includes p-fluorobenzyl, m-fluorobenzyl, o-fluorobenzyl and the like.
"氟代苯基"包括对氟苯基、 间氟苯基、 邻氟苯基等。 "Fluorophenyl" includes p-fluorophenyl, m-fluorophenyl, o-fluorophenyl and the like.
"甲基苯基"包括对甲基苯基、 间甲基苯基、 邻甲基苯基等。 缩写 "Methylphenyl" includes p-methylphenyl, m-methylphenyl, o-methylphenyl and the like. Abbreviation
在部分结构式中, Pr"代表异丙基, "Et"代表乙基, "Βι 代 表苯基, "Boc"代表叔丁氧羰基。 In the partial structural formula, Pr" represents an isopropyl group, "Et" represents an ethyl group, "Βι represents a phenyl group, and "Boc" represents a tert-butoxycarbonyl group.
"TFA"代表三氟乙酸, "THF"代表四氢呋喃; "DMF"代表 Ν,Ν-二甲基甲酰胺; "DMSO" 代表二甲亚砜; "PhH" 代表苯; "ipr2NEt"代表二异丙基乙胺; "NEt3" 代表三乙胺; "DCC"代表 二环己基碳二亚胺; "DIEA"代表二异丙基乙胺; "DMAP" 代表 4-Ν,Ν-二甲基氨基吡啶; "EDCI"代表 1-乙基 -3-(3-二甲氨基丙基)碳 二亚胺盐酸盐; "HATU"代表 N- [(二甲氨基 )(3//-1,2,3-三唑并 (4,5-b) 吡 啶 -3- 氧 基 ) 亚 甲 基 ] 甲 基 甲 铵 六 氟 磷 酸 盐 ( N- [(dimethylamino)(3 - 1 ,2,3-triazolo(4,5-b)pyridine-3-yloxy)methyle ne]-iV-methylmethanaminium hexafluorophosphate ); " HBTU " 代表 ( 苯 并 三 唑 -1- 基 )-1,1 ,3,3- 四 甲 基 脲 六 氟 磷 酸 盐 ( 0-(benzotriazol- 1 -yl)- 1 , 1 ,3,3-tetramethyluronium hexafluorophosphate); "HOBt"代表 1 -羟基苯并三唑。 本发明化合物的结构 "TFA" stands for trifluoroacetic acid, "THF" stands for tetrahydrofuran; "DMF" stands for Ν, Ν-dimethylformamide; "DMSO" stands for dimethyl sulfoxide; "PhH" stands for benzene; "ipr 2 NEt" stands for two Isopropylethylamine; "NEt 3 " stands for triethylamine; "DCC" stands for dicyclohexylcarbodiimide; "DIEA" stands for diisopropylethylamine; "DMAP" stands for 4-Ν,Ν-dimethyl Aminopyridine; "EDCI" stands for 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride; "HATU" stands for N-[(dimethylamino)(3//-1 , 2,3-triazolo(4,5-b)pyridin-3-oxy)methylene]methylammonium hexafluorophosphate ( N- [(dimethylamino)(3 - 1 ,2,3-triazolo(4,5-b)pyridine-3-yloxy)methyle ne]-iV-methylmethanaminium hexafluorophosphate ); " HBTU " stands for ( benzotriazole - 1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (0-(benzotriazol- 1 -yl)-1,1,3,3-tetramethyluronium hexafluorophosphate); "HOBt" stands for 1 - Hydroxybenzotriazole. Structure of the compound of the present invention
如前所述, 本发明化合物的结构如通式 (I) 所示。 , 且 X为 NH; 或者 U As described above, the structure of the compound of the present invention is as shown in the formula (I). , and X is NH; or U
为 , 且 X为 NH; 或者 U为 , 且 X为 CH: 也就是说, 本发明的一些优选化合物符合下述通式: for And X is NH; or U is, and X is CH: that is, some preferred compounds of the invention conform to the following formula:
( la) (la)
本发明的另一些优选的化合物符合下述通式: Further preferred compounds of the invention conform to the general formula:
( lb ) ( lb )
而本发明的另一些优选的化合物符合下述通式: Further preferred compounds of the invention are in accordance with the following formula:
更优选地, 在通式 (I) 中, 选自由如下基团构成的组: 三氟 甲基羰 、 叔丁氧羰基、 异噁唑基羰基、 呋喃基 More preferably, in the formula (I), a group consisting of the following groups is selected: trifluoromethylcarbonyl, tert-butoxycarbonyl, isoxazolylcarbonyl, furyl
羰基、 R2为甲基、 异丙基、 苯基、 苄基、 氟 代苄基; R3选自由如下基团构成的组: 甲基、 异丙基、 苄基、 氟代苄 基 (特别是对氟苄基)、 苯基和甲基苯基 (特别是对甲基苯基); R4 选自由如下基团构成的组: 乙基、 苯基、 苄基、 甲基苯基(特别是对 甲基苯基)和氟代苄基; R5为异丁基、 苯基、 苄基、 甲基苯基(特别 是对甲基苯基)、 氟代苄基 (特别是对氟苄基) 和氟代苯基。 Carbonyl, R 2 is methyl, isopropyl, phenyl, benzyl, fluorobenzyl; R 3 is selected from the group consisting of methyl, isopropyl, benzyl, fluorobenzyl (especially Fluorobenzyl), phenyl and methylphenyl (especially p-methylphenyl); R4 is selected from the group consisting of ethyl, phenyl, benzyl, methylphenyl (especially Rhenyl) and fluorobenzyl; R 5 is isobutyl, phenyl, benzyl, methylphenyl (especially p-methylphenyl), fluorobenzyl (especially p-fluorobenzyl) and Fluorophenyl.
下面列出了本发明的一些特别优选的具体化合物, Some particularly preferred specific compounds of the invention are listed below,
本发明的化合物可以是其药学可接受的酸加成盐的形式,所述盐 可以是与无机酸如盐酸、 氢溴酸、 硫酸、 硝酸、 磷酸等, 以及有机酸 如乙酸、三氟乙酸、 丙酸、 乙醇酸、 丙酮酸、 草酸、 马来酸、 丙二酸、 琥珀酸、 富马酸、 酒石酸、 柠檬酸、 苯甲酸、 肉桂酸、 苦杏仁酸、 甲 磺酸、 乙磺酸、 对甲苯磺酸、 水杨酸等形成的盐。 本发明化合物的制备方法 The compound of the present invention may be in the form of a pharmaceutically acceptable acid addition salt thereof, which may be combined with a mineral acid such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, etc., and an organic acid such as acetic acid, trifluoroacetic acid, Propionic acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, a salt formed of toluenesulfonic acid, salicylic acid or the like. Method for preparing compounds of the invention
本发明所提供的式 (I) 的化合物的制备方法包括如下步骤: The preparation method of the compound of the formula (I) provided by the invention comprises the following steps:
(a)将式(II)的化合物中氨基的保护基 RJ兑除, 其中 选自由 如下基团构成的组:任选被 C6〜CI()芳基取代的 <^〜0:6烷氧羰基和任 选被卤素取代的 c,〜c6烷基酰基, 特别是叔丁氧羰基、 三氟乙酰基 或苄氧羰基; (a) a protecting group RJ of an amino group in the compound of the formula (II), which is selected from the group consisting of <^~0: 6 alkane optionally substituted by a C 6 -C I() aryl group An oxycarbonyl group and a c,~c 6 alkyl acyl group optionally substituted by a halogen, particularly a tert-butoxycarbonyl group, a trifluoroacetyl group or a benzyloxycarbonyl group;
(b) 在缩合试剂的存在下, 将步骤 (a)的产物与式 (III) 的化合物 縮合, 得到式 (I) 的化合物, (b) condensing the product of step (a) with a compound of formula (III) in the presence of a condensing reagent to provide a compound of formula (I),
(I) (I)
其中, 、 R2、 R4和 U的定义与前述式 (I) 中的定义相同。 式 (Π) 的化合物的合成可参考文献: Qingping Tian, Naresh K. Nayyar, Srinivasan Babu, Lijian Chen, Junhua Tao, Steven Lee, Anthony Tibbetts, Terence Moran, Jason Liou, Ming Guo and Timothy P. Kennedy Ze i. 2001, 42, 6808-6809。 式 (III) 的化合物的合成可参 考文献: Dawei Ma, Weiqing Xie, Bin Zou, Qiong Lei and Duanqing Pei Tetrahedron Lett. 2004, 45, 8103-8105。 Wherein, the definitions of R 2 , R 4 and U are the same as defined in the above formula (I). The synthesis of compounds of the formula (Π) can be found in the literature: Qingping Tian, Naresh K. Nayyar, Srinivasan Babu, Lijian Chen, Junhua Tao, Steven Lee, Anthony Tibbetts, Terence Moran, Jason Liou, Ming Guo and Timothy P. Kennedy Ze i. 2001, 42, 6808-6809. The synthesis of compounds of formula (III) can be found in the literature: Dawei Ma, Weiqing Xie, Bin Zou, Qiong Lei and Duanqing Pei Tetrahedron Lett. 2004, 45, 8103-8105.
在本发明的优选实施方案中, 将式 (Π) 的化合物在有机溶剂中 与酸(例如二氯甲垸与三氟乙酸体积比为 1〜4: 1混合液)在室温下 反应 1〜4小时; 抽去溶剂, 将产物与式 (III) 的化合物溶于非质子 溶剂(如 CH2C12、 THF、 CHCI3)中,加入缩合试剂(如 HATU、 HBTU 或 EDCI), 然后加入有机碱(如 ipr2Net或 NEt3), 在室温下反应 8〜 24小时, 得到式 (I) 的化合物。 In a preferred embodiment of the present invention, the compound of the formula (Π) is reacted with an acid (for example, a mixture of dichloromethane and trifluoroacetic acid in a volume ratio of 1 to 4:1) in an organic solvent at room temperature for 1 to 4 Hour solvent; dissolve the product with a compound of formula (III) in an aprotic solvent (eg CH 2 C1 2 , THF, CHCI3), add a condensation reagent (eg HATU, HBTU or EDCI), then add an organic base ( The reaction is carried out at room temperature for 8 to 24 hours, such as ipr 2 Net or NEt 3 ), to give a compound of the formula (I).
还可以通过衍生化, 将式 (I) 的化合物中的 1^基团更换为预期 的基团 IV, 从而得到式 (I) 的化合物的一系列衍生物, 其中, 选自由如下基团构成的组:任选被卤素取代的 (^〜(^垸基羰基、 C3〜 C6环垸基羰基、 任选被 C6〜C1()芳基取代的 <^〜06垸氧羰基、 C6〜 C1()芳基羰基和任选被 (^〜0:4垸基取代的 C5〜C1Q杂芳基羰基; 所述 的衍生化包括如下步骤: (c) 将得到的式 (I) 的'化合物中的 脱除; (d)在縮合试剂的存在下,将步骤 (c)的产物与羧酸 IV-OH进行縮合, 得到衍生化了的式 (I) 的化合物, 其中 基团被更换为 I 基团; 其中 '选自由如下基团构成的组:任选被卤素取代的 (^〜(^烷基羰 基、 C3〜C6环垸基羰基、 任选被 C6〜C1()芳基取代的(^〜( 6垸氧羰 基、 06〜 。芳基羰基和任选被 C,〜C4烷基取代的 C5〜d。杂芳基羰 基, 如三氟甲基羰基、 苄氧羰基、 叔丁氧羰基、 异噁唑基羰 It is also possible to replace a group of the compound of the formula (I) with the intended group IV by derivatization, thereby obtaining a series of derivatives of the compound of the formula (I), wherein the group consisting of the following groups is selected group: halogen optionally substituted C 3 ~ C 6 cycloalkyl alkyl with a carbonyl group (^ - (^ alkyl with a carbonyl group, optionally <embankment 6 ~ 0 ^ oxycarbonyl group is C 6 ~C 1 () of the substituted aryl group, C 6 ~ a C 1 () arylcarbonyl group and a C 5 ~C 1Q heteroarylcarbonyl group optionally substituted by (^~0: 4 fluorenyl); the derivatization described includes the following steps: (c) the obtained formula (I) Deprotection of the compound; (d) condensation of the product of step (c) with the carboxylic acid IV-OH in the presence of a condensing reagent to give a derivatized compound of formula (I) wherein the group is replaced by a group I; wherein 'a group selected from the group consisting of: optionally substituted by halogen (^ - (^ alkylcarbonyl, C 3 ~C 6 cycloalkyl alkyl with a carbonyl group, optionally substituted C 6 ~C 1 () aryl substituted (^~( 6垸 oxycarbonyl, 0 6 〜. arylcarbonyl and optionally substituted by C, ~C 4 alkyl C 5 ~d. Heteroarylcarbonyl, such as trifluoromethyl) Carbonyl, benzyloxycarbonyl, Tert-butoxycarbonyl, isoxazolylcarbonyl
基、 呋喃基羰基、 Base, furanylcarbonyl,
在本发明的一些优选实施方案中, 将待衍生化的式 (I) 的化合 物在有机溶剂中与酸(例如二氯甲垸与三氟乙酸体积比为 1〜4: 1混 合液)室温反应 1〜4小时; 抽去溶剂, 将产物与羧酸 R -OH溶于非 质子溶剂(如 CH2C12、 THF、 CHC13) 中, 加入缩合试剂(如 HATU、 HBTU或 EDCI), 然后加入有机碱(如 ipr2Net或 NEt3), 在室温下反 应 8〜24小时, 得到式 (I) 的化合物的一系列衍生物。 In some preferred embodiments of the invention, the compound of formula (I) to be derivatized is reacted in an organic solvent with an acid (for example, a mixture of dichloromethane and trifluoroacetic acid in a volume ratio of from 1 to 4:1) at room temperature. 1~4 hours; remove the solvent, dissolve the product with the carboxylic acid R-OH in an aprotic solvent (such as CH 2 C1 2 , THF, CHC1 3 ), add a condensation reagent (such as HATU, HBTU or EDCI), then add An organic base (e.g., ipr 2 Net or NEt 3 ) is allowed to react at room temperature for 8 to 24 hours to provide a series of derivatives of the compound of formula (I).
其中, 上面所述的酸优选为三氟乙酸或盐酸; 优选的有机溶剂选 自由如下成员构成的组: CH2C12、 四氢呋喃、 CHC13、 N,N-二甲基甲 酰胺和二氧六环; 优选的非质子溶剂选自由如下成员构成的组: CH2C12、 四氢呋喃、 CHC13、 Ν,Ν-二甲基甲酰胺、 二甲亚砜和苯; 优 选的缩合试剂选自由如下成员构成的组: HATU、 HBTU和 EDCI; 优选的有机碱选自由如下成员构成的组: 二异丙基乙胺和三乙胺。 药物组合物及制剂 Wherein, the acid described above is preferably trifluoroacetic acid or hydrochloric acid; a preferred organic solvent is selected from the group consisting of CH 2 C1 2 , tetrahydrofuran, CHC1 3 , N,N-dimethylformamide and dioxane Ring; preferred aprotic solvent is selected from the group consisting of CH 2 C1 2 , tetrahydrofuran, CHC1 3 , hydrazine, hydrazine-dimethylformamide, dimethyl sulfoxide and benzene; preferred condensation reagents are selected from the following members Groups constituted: HATU, HBTU and EDCI; preferred organic bases are selected from the group consisting of diisopropylethylamine and triethylamine. Pharmaceutical compositions and preparations
本发明的药物组合物包含本发明的小分子抑制剂以及一种或多 种药学可接受的载体。 所述组合物可以采用多种制剂形式,药学可接受的载体可以是固 体或液体。 固体形式制剂包括散剂、 片剂、 可分散颗粒剂和胶囊剂。 固体载体可以是一种或多种物质, 其也可用作稀释剂、 调味剂、增溶 剂、 润滑剂、 助悬剂、 粘合剂或片剂崩解剂; 其也可以是包封材料。 各种制剂的制备可以按照药学领域的常规方法进行。 The pharmaceutical compositions of the present invention comprise a small molecule inhibitor of the invention together with one or more pharmaceutically acceptable carriers. The compositions may take a wide variety of formulations, and the pharmaceutically acceptable carrier may be either solid or liquid. Solid form preparations include powders, tablets, dispersible granules and capsules. The solid carrier can be one or more substances which may also act as a diluent, a flavoring agent, a solubilizer, a lubricant, a suspending agent, a binder or a tablet disintegrating agent; it may also be an encapsulating material. The preparation of various preparations can be carried out in accordance with a conventional method in the field of pharmacy.
优选地, 该药物制剂是单位剂型, 如包装的制剂, 该包装含有分 离量的制剂, 如包装的片剂、 胶囊剂和小瓶或安瓿中的散剂。 Preferably, the pharmaceutical preparation is in unit dosage form, such as a packaged preparation, the package containing discrete amounts of preparation such as packaged tablets, capsules and vials or powders in ampoules.
剂量可根据患者的需要、疾病的严重性和采用的特定化合物而变 化。 为了方便起见, 每天的总剂量可在一整天中分成几次给药。 医学 领域技术人员能够根据具体情况决定合适的剂量。 为了更加详细地解释本发明,下面将结合附图给出本发明的具体 实施例。在对这些实施例进行描述时,没有对公知的实验方法、仪器、 试剂和材料等进行详细的描述, 以避免喧宾夺主、淡化了本发明的主 要内容。 实施例 1 The dosage can vary depending on the needs of the patient, the severity of the disease, and the particular compound employed. For convenience, the total daily dose can be divided into several doses throughout the day. The skilled person in the medical field is able to determine the appropriate dosage depending on the specific situation. In order to explain the present invention in more detail, specific embodiments of the present invention will be described below in conjunction with the accompanying drawings. In describing the embodiments, well-known experimental methods, apparatus, reagents, materials, and the like have not been described in detail to avoid the disadvantages of the present invention. Example 1
将 42 mg 溶解在 2 ml CH2C12中, 加入 0.5 mlWill be 42 mg Dissolved in 2 ml CH 2 C1 2 , added 0.5 ml
TFA, 在室温下反应 1小时, 抽干溶剂。 将得到的脱 Boc的底物溶解 TFA, reacted at room temperature for 1 hour, and the solvent was evaporated. Dissolve the obtained de-Boc substrate
ipr2NEt, 然后加入 63 mg HATU。在室温下反应 12小时, 依次用 1 M HCK 饱和 NaHCO^ 溶液、 饱和食盐洗涤, 用 Na2S04干燥。 过滤, 减 压 蒸 去 溶 剂 , 快速 柱 层 析 , 得 到 52 mg 产 物 Ipr 2 NEt, then add 63 mg HATU. After reacting for 12 hours at room temperature, it was washed with 1 M HCK saturated NaHCO^ solution, saturated brine and dried over Na 2 SO 4 . filter, The solvent was evaporated under reduced pressure and flash column chromatography afforded 52 mg.
谱图数据如下: The spectrum data is as follows:
Ή NMR: δ (500 MHz, CDC13) 0.76 (d, 3H, J = 6.9 Hz), 0.98 (d, 3H; J = 5.7 Hz), 1.30 (t, 3H, J = 7.3 Hz), 1.42 (s, 9H), 1.74-1.94 (m, 4H): 2.10-2.40 (m, 2H), 2.49-2.52 (m, IH), 2.67-2.71 (m, IH), 2.85-3.00 (m; IH), 3.05-3.17 (m, 1H), 3.23-3.39 (m, 3H), 4.18 (q, 2H, J = 7.1 Hz): 4.41-4.51 (m, 1H), 4.58-4.65 (m, IH), 5.03-5.10 (m, IH), 5.49 (t, IH, J = 14.7 Hz), 5.98 (dd, 1H, J = 15.8 Hz, 4.4 Hz), 6.70-7.00 (m, 3H); 7.12-7.16 (m, 3H); Ή NMR: δ (500 MHz, CDC1 3 ) 0.76 (d, 3H, J = 6.9 Hz), 0.98 (d, 3H ; J = 5.7 Hz), 1.30 (t, 3H, J = 7.3 Hz), 1.42 (s , 9H), 1.74-1.94 (m, 4H): 2.10-2.40 (m, 2H), 2.49-2.52 (m, IH), 2.67-2.71 (m, IH), 2.85-3.00 (m ; IH), 3.05 -3.17 (m, 1H), 3.23-3.39 (m, 3H), 4.18 (q, 2H, J = 7.1 Hz): 4.41-4.51 (m, 1H), 4.58-4.65 (m, IH), 5.03-5.10 (m, IH), 5.49 (t, IH, J = 14.7 Hz), 5.98 (dd, 1H, J = 15.8 Hz, 4.4 Hz), 6.70-7.00 (m, 3H) ; 7.12-7.16 (m, 3H) ;
ESI-MS : [M+H+] 590.2, HRMS 实测值 m/z 612.3062: C31H44N307Fna计算值 612.3065 ; ESI-MS: [M + H +] 590.2, HRMS Found m / z 612.3062: C 31 H 44 N 3 0 7 Fna calcd 612.3065;
[ ]D 24.0 (c 0.69, CHC13) 。 实施例 1 [ ] D 24.0 (c 0.69, CHC1 3 ). Example 1
将 45 mg 溶解在 2 ml CH2C12中, 加入 0.5 ml TFA, 在室温下反应 1小时, 抽干溶剂。 将得到的脱 Boc Will be 45 mg It was dissolved in 2 ml of CH 2 C1 2 , added with 0.5 ml of TFA, and reacted at room temperature for 1 hour, and the solvent was evaporated. Will get off Boc
的底物溶解在 2 ml CH2C12中,加入 12 mg ,再加入 48 μΐ ipr2NEt, 然后加入 44 mg HATU。在室温下反应 12小时, 依次用 1 M HC 饱和 NaHCO^ 溶液、 饱和食盐水洗涤, 用 Na2S04干燥。 过 减压蒸去溶剂, 快速柱层析, 得到 34 mg 产物 The substrate is dissolved in 2 ml CH 2 C1 2 and 12 mg is added. Then add 48 μΐ ipr 2 NEt and then add 44 mg HATU. The reaction at room temperature for 12 hours, washed with 1 M HC saturated NaHCO ^ solution, saturated brine, dried with Na 2 S0 4. Over The solvent was evaporated under reduced pressure and flash column chromatography afforded
谱图数据如下: The spectrum data is as follows:
Ή NMR: δ (300 MHz, CDC13) 0.85 (d, 3H, J = 6.6 Hz), 1.03 (d, 3H, J = 6.9 Hz), 1.30 (t, 3H, J = 7.2 Hz), 1.52-1.61 (m, IH), 1.71-1.90 (m, 2H), 2.26-2.42 (m, 2H), 2.48 (s, 3H), 2.53-2.73 (m, 3H), 2.84-2.98 (m, 2H), 3.13-3.23 (m, IH), 3.30-3.42 (m, 2H), 4.18 (q, 2H, J = 7.2 Hz), 4.41-4.56 (m, IH), 4.66-4.76 (m, IH), 5.50 (d, 1H, J = 15.6 Hz), 5.91 (s, IH), 6.39 (s, IH), 6.63 (dd, 1H, J = 15.3 Hz, 4.8 Hz), 6.94-7.03 (m, 2H), 7.11-7.35 (m, 4H); Ή NMR: δ (300 MHz, CDC1 3 ) 0.85 (d, 3H, J = 6.6 Hz), 1.03 (d, 3H, J = 6.9 Hz), 1.30 (t, 3H, J = 7.2 Hz), 1.52-1.61 (m, IH), 1.71-1.90 (m, 2H), 2.26-2.42 (m, 2H), 2.48 (s, 3H), 2.53-2.73 (m, 3H), 2.84-2.98 (m, 2H), 3.13 -3.23 (m, IH), 3.30-3.42 (m, 2H), 4.18 (q, 2H, J = 7.2 Hz), 4.41-4.56 (m, IH), 4.66-4.76 (m, IH), 5.50 (d , 1H, J = 15.6 Hz), 5.91 (s, IH), 6.39 (s, IH), 6.63 (dd, 1H, J = 15.3 Hz, 4.8 Hz), 6.94-7.03 (m, 2H), 7.11-7.35 (m, 4H) ;
ESI-MS: [M+H+] 599.3, [M+Na+] 621.3, HRMS 实测值 m/z 621.2717, C31H44N307FNa计算值 621.2695; ESI-MS: [M + H +] 599.3, [M + Na +] 621.3, HRMS Found m / z 621.2717, C 31 H 44 N 3 0 7 FNa calcd 621.2695;
[ ]D 32.8 (c 0.51, CHCl3) 。 [ ] D 32.8 (c 0.51, CHCl 3 ).
实施例 1和实施例 2可以用下面的反应式简要概括: Example 1 and Example 2 can be briefly summarized by the following reaction formula:
采用与上述方法类似的方法制备以下化合物: The following compounds were prepared in a similar manner to the above procedure:
Ή NMR (300MHz, CDC13) δ 8.13-8.05 (m, IH), 7.63-7.54 (m, 1H), 7.412(m, 2H), 7.29 (m, 3H), 6.86-6.66 (m, 2H), 5.95-5.87 (m, IH), 5.67-4.82 (m, 2H), 4.74-4.50 (m, 1H), 4.21-4.02 (m, 3H), 3.34-3.21 (m, 2H), 2.71-2.31 (m, 2H), 2.14-1.91 (m, 3H), 1.84-1.68 (m, IH), 1.66-1.53 (m, 1H), 1.42 (s, 9H), 1.30-1.21 (m, 3H), 0.96-0.81 (m, 6H)。 NMR NMR (300MHz, CDC1 3 ) δ 8.13-8.05 (m, IH), 7.63-7.54 (m, 1H), 7.412 (m, 2H), 7.29 (m, 3H), 6.86-6.66 (m, 2H), 5.95-5.87 (m, IH), 5.67-4.82 (m, 2H), 4.74-4.50 (m, 1H), 4.21-4.02 (m, 3H), 3.34-3.21 (m, 2H), 2.71-2.31 (m , 2H), 2.14-1.91 (m, 3H), 1.84-1.68 (m, IH), 1.66-1.53 (m, 1H), 1.42 (s, 9H), 1.30-1.21 (m, 3H), 0.96-0.81 (m, 6H).
Ή NMR (300 MHz, CDC13) δ 8.25-8.04 (m, IH), 7.75-7.61 (m, IH) 7.47 (m, IH), 7.40 (m, 2H), 7.30 (m, 3H), 6.85-6.67 (m, 1H), 6.42 (d, J = 8.7 Hz, IH), 5.97-5.80 (m, IH), 5.62 (m, IH), 4.77 (m, 1H), 4.57 (m, IH) 4.12 (m, 2H), 3.33 (m, 2H), 2.45 (s, 3H), 2.41 (m, IH), 2.24-2.01 (m, 4H): 1.98- 1.76 (m, IH), 1.71-1.44 (m, IH), 1.25 (m, 3H), 1.00-0.88 (m, 6H)。NMR NMR (300 MHz, CDC1 3 ) δ 8.25-8.04 (m, IH), 7.75-7.61 (m, IH) 7.47 (m, IH), 7.40 (m, 2H), 7.30 (m, 3H), 6.85- 6.67 (m, 1H), 6.42 (d, J = 8.7 Hz, IH), 5.97-5.80 (m, IH), 5.62 (m, IH), 4.77 (m, 1H), 4.57 (m, IH) 4.12 (m, 2H), 3.33 (m, 2H), 2.45 (s, 3H), 2.41 (m, IH), 2.24-2.01 (m, 4H) : 1.98- 1.76 (m, IH), 1.71-1.44 (m, IH), 1.25 (m, 3H), 1.00-0.88 (m, 6H).
Ή NMR (300 MHz, CDC13) δ 8.30 (m, IH), 8.10 (m, IH), 7.52 (m, IH), 7.41-7.30 (m, 5H), 7.01 (m, IH), 6.85-6.65 (m, 1H), 5.97-5.78 (m, IH), 5.50 (m, IH), 4.54 (m, 1H), 4.38 (m, IH), 4.18 (m, 2H), 3.35-3.25 (m, 2H), 2.47 (m, 1H), 2.22-2.09 (m, 2H), 1.87 (m, 2H), 1.43 (m, 1H), 1.26 (m, 4H), 0.96-0.85 (m, 8H), 0.74 (m, 2H)。 NMR NMR (300 MHz, CDC1 3 ) δ 8.30 (m, IH), 8.10 (m, IH), 7.52 (m, IH), 7.41-7.30 (m, 5H), 7.01 (m, IH), 6.85-6.65 (m, 1H), 5.97-5.78 (m, IH), 5.50 (m, IH), 4.54 (m, 1H), 4.38 (m, IH), 4.18 (m, 2H), 3.35-3.25 (m, 2H ), 2.47 (m, 1H), 2.22-2.09 (m, 2H), 1.87 (m, 2H), 1.43 (m, 1H), 1.26 (m, 4H), 0.96-0.85 (m, 8H), 0.74 ( m, 2H).
ESI-MS m/z 549 (M+Na)+; HRMS实测值 mlz 549.2681 (M+Na)+, C28H38N406Na计算值 549.2684。ESI-MS m / z 549 ( M + Na) +; HRMS found mlz 549.2681 (M + Na) + , C 28 H 38 N 4 0 6 Na calc 549.2684.
Ή NMR (300 MHz, CD3OD) δ 7.88-7.80 (m, 3H), 7.56-7.41 (m: 7H), 7.40-7.33 (m, 4H), 6.97-6.93 (m, 1H), 6.04 (m, 1H), 5.45 (m, 1H): 4.60 (m, IH), 4.41 (m, IH), 4.17 (m, 2H), 3.71 (m, 2H), 2.19 (m, 2H): 1.93 (m, 2H), 1.54 (m, 2H), 1.24 (m, 4H), 1.03 (m, 6H); NMR NMR (300 MHz, CD 3 OD) δ 7.88-7.80 (m, 3H), 7.56-7.41 (m : 7H), 7.40-7.33 (m, 4H), 6.97-6.93 (m, 1H), 6.04 (m , 1H), 5.45 (m, 1H): 4.60 (m, IH), 4.41 (m, IH), 4.17 (m, 2H), 3.71 (m, 2H), 2.19 (m, 2H) : 1.93 (m, 2H), 1.54 (m, 2H), 1.24 (m, 4H), 1.03 (m, 6H) ;
ESI-MS m/z 585 (M+Na)+ ; HRMS实测值 mlz 563.2862 (M+H)+ : C31H39N406计算值 549.2684。 实施例 3 ESI-MS m / z 585 ( M + Na) +; HRMS found mlz 563.2862 (M + H) + : C 31 H 39 N 4 0 6 calcd 549.2684. Example 3
在对本实施例进行描述时, 参考了如下的反应式(其中某些化合 物下方的一位或二位阿拉伯数字为其编号): In describing the present embodiment, reference is made to the following reaction formula (where one or two Arabic numerals below some of the compounds are numbered):
92% 92%
N1 化合物 9的制备 N1 Preparation of compound 9
将 321 mg ( l mmol) 化合物 8溶解在 2 ml二氯甲垸中, 再加入 l ml三氟乙酸, 室温下搅拌 1小时。 将溶剂减压蒸去, 油泵抽干。 将 所得到的产物溶解在 4 ml 二氯甲垸中, 依次加入 260 mg 化合物 , 0 4 ml二异丙基乙胺, 162 mg HOBt,最后加入 247 mg DCC, 在室温下搅拌过夜。 将反应体系过滤, 加入 10 ml二氯甲烷, 依次用 1 M HC1、 饱和碳酸氢钠水溶液、 饱和氯化钠水溶液洗涤, 用 无水硫酸钠干燥, 过滤, 蒸去溶剂, 快速柱层析, 得到 387 mg化合 物 9, 收率 92%。 321 mg (1 mmol) of Compound 8 was dissolved in 2 ml of dichloromethane, and 1 ml of trifluoroacetic acid was added thereto, and the mixture was stirred at room temperature for 1 hour. The solvent was evaporated under reduced pressure and the oil pump was drained. The obtained product was dissolved in 4 ml of dichloromethane, and 260 mg of the compound was added in sequence. , 0 4 ml of diisopropylethylamine, 162 mg of HOBt, and finally 247 mg of DCC, and stirred at room temperature overnight. The reaction system was filtered, and 10 ml of methylene chloride was added, and the mixture was washed with 1 M EtOAc, EtOAc. 387 mg of compound 9, yield 92%.
谱图数据如下: The spectrum data is as follows:
Ή NMR: δ (300 MHz, CDC13) 0.90-0.95 (m, 12H), 1.44 (s, 9H), 1.45-1.68 (m, 3H), 2.03 -2.15 (m, 1H), 3.88 (dd, IH, J = 6.6 Hz, 9.3 Hz), 4.64-4.72 (m, IH), 5.06 (d, IH, J = 9.9 Hz), 5.16 (d, 2H, J = 3.3 Hz), 6.24 (d, IH, J = 10.5 Hz), 7.29-7.30 (m, 5H)。 化合物 10的制备 Ή NMR: δ (300 MHz, CDC1 3 ) 0.90-0.95 (m, 12H), 1.44 (s, 9H), 1.45-1.68 (m, 3H), 2.03 -2.15 (m, 1H), 3.88 (dd, IH , J = 6.6 Hz, 9.3 Hz), 4.64-4.72 (m, IH), 5.06 (d, IH, J = 9.9 Hz), 5.16 (d, 2H, J = 3.3 Hz), 6.24 (d, IH, J = 10.5 Hz), 7.29-7.30 (m, 5H). Preparation of Compound 10
将 331 mg化合物 9溶解在 4 ml二氯甲垸中,再加入 1 ml三氟乙 酸, 室温下搅拌 1小时。 将溶剂减压蒸去, 油泵抽干。 将所得到的产 物溶解在 4 ml二氯甲垸中,依次加入 19 mg化合物 B°cH N"^C02H, 0.3 ml二异丙基乙胺, 128 mg HOBt, 最后加入 195.mg DCC, 在室温下 搅拌过夜。将反应体系过滤, 加入 10 ml二氯甲垸, 依次用 1 M HC1、 饱和碳酸氢钠水溶液、 饱和氯化钠水溶液洗涤, 用无水硫酸钠干燥, 过滤, 蒸去溶剂, 快速柱层析, 得到 357 mg化合物 10, 收率 92%。 331 mg of Compound 9 was dissolved in 4 ml of dichloromethane, and 1 ml of trifluoroacetic acid was added thereto, and the mixture was stirred at room temperature for 1 hour. The solvent was evaporated under reduced pressure and the oil pump was drained. The obtained product was dissolved in 4 ml of dichloromethane, and 19 mg of compound B ° cH N "^ C0 2H, 0.3 ml of diisopropylethylamine, 128 mg of HOBt, and finally 195. mg of DCC were added. After stirring at room temperature, the reaction system was filtered, and 10 ml of dichloromethane was added, and then washed with 1 M HCl, saturated aqueous sodium hydrogencarbonate and saturated aqueous sodium chloride, dried over anhydrous sodium sulfate, filtered, evaporated Solvent, flash column chromatography gave 357 mg of compound 10, yield 92%.
谱图数据如下: The spectrum data is as follows:
Ή NMR: δ (300 MHz, CDC13) 0.89-0.94 (m, 12H), 1.35 (d, 3H, J = 7.2 Hz), 1.44 (s, 9H), 1.56-1.69 (m, 3H), 2.13 -2.24 (m, IH), 4.09-4.19 (m, 1H), 4.24 (dd, 1H, J = 6.6 Hz, 8.7 Hz), 4.92-5.03 (m, 1H), 4.95 (d, 2H: J = 5.4 Hz), 6.35-6.44 (m, 1H), 6.69-6.78 (m, 2H), 7.31-7.42 (m, 5H)。 化合物 11的制备 Ή NMR: δ (300 MHz, CDC1 3 ) 0.89-0.94 (m, 12H), 1.35 (d, 3H, J = 7.2 Hz), 1.44 (s, 9H), 1.56-1.69 (m, 3H), 2.13 - 2.24 (m, IH), 4.09-4.19 (m, 1H), 4.24 (dd, 1H, J = 6.6 Hz, 8.7 Hz), 4.92-5.03 (m, 1H), 4.95 (d, 2H : J = 5.4 Hz), 6.35-6.44 (m, 1H), 6.69-6.78 (m, 2H), 7.31-7.42 (m, 5H). Preparation of Compound 11
将 310 mg化合物 10溶解在 5 ml甲醇中, 加入 62 mg 20%的钯 碳, 常压氢化 3小时, 过滤掉钯碳, 将溶剂蒸去, 快速柱层析, 得到 258 mg化合物 11, 收率 100%。 310 mg of compound 10 was dissolved in 5 ml of methanol, 62 mg of 20% palladium on carbon was added, hydrogenation was carried out at atmospheric pressure for 3 hours, palladium carbon was filtered off, the solvent was evaporated, and the column was purified by column chromatography to give 258 mg of compound 11. 100%.
谱图数据如下: The spectrum data is as follows:
Ή NMR: δ (300 MHz, CDC13) 0.91-0.96 (m, 12H), 1.34 (d, 3H, J = 6.9 Hz), 1.44 (s, 9H), 1.60-1.75 (m, 3H), 2.08 -2.20 (m, IH), 4.18-4.28 (m, 1H), 4.33 (t, 1H, J = 9.0 Hz), 4.51-4.61 (m, IH), 5.27-5.35 (m, IH), 7.08-7.17 (m, 1H), 7.27-7.33 (m, 1H)。 化合物 N2的制备 Ή NMR: δ (300 MHz, CDC1 3 ) 0.91-0.96 (m, 12H), 1.34 (d, 3H, J = 6.9 Hz), 1.44 (s, 9H), 1.60-1.75 (m, 3H), 2.08 - 2.20 (m, IH), 4.18-4.28 (m, 1H), 4.33 (t, 1H, J = 9.0 Hz), 4.51-4.61 (m, IH), 5.27-5.35 (m, IH), 7.08-7.17 ( m, 1H), 7.27-7.33 (m, 1H). Preparation of compound N2
将 50 mg 溶解在 2 ml CH2C12中, 加入 0.5 mlWill be 50 mg Dissolved in 2 ml CH 2 C1 2 , added 0.5 ml
TFA, 在室温下反应 1小时, 抽干溶剂。 将得到的脱 Boc的底物溶解 在 2 ml CH2C12中, 加入 62 mg化合物 11, 再加入 97 μΐ 'P^NEt, 然 后加入 75 mg HATU。 在室温下反应 12小时, 依次用 1 M HC1、 饱和 NaHC03水溶液、 饱和食盐水洗涤, 用 Na2S04干燥, 过滤, 减压蒸 去溶剂, 快速柱层析, 得到 76 mg产物 N2, 收率 81%。 TFA, reacted at room temperature for 1 hour, and the solvent was drained. The obtained Boc-depleted substrate was dissolved in 2 ml of CH 2 C1 2 , 62 mg of compound 11 was added, and 97 μM of 'P^NEt was added, followed by 75 mg of HATU. The reaction at room temperature for 12 hours, washed with 1 M HC1, saturated aqueous NaHC0 3, and saturated brine, dried over Na 2 S0 4, filtered, and the solvent was evaporated under reduced pressure, flash column chromatography to give 76 mg product N2, close The rate is 81%.
谱图数据如下: The spectrum data is as follows:
'H NMR (300MHz, CDC13) δ 0.89-1.02(m, 12H) 1.25-1.31 (m, 3H) 1.36-1.40 (m, 2H) 1.42 and 1.45 (2 x s, 9H) 1.51 -1.68 (m, 3H) 1.69-1.97 (m, 2H) 2.04-2.15 (m, IH) 2.19-2.57 (m, 4H) 3.22-3.40 (m, 2H) 4.11-4.35 (m, 3H) 4.47-4.61 (m, IH) 4.67-4.78 (m, 2H) 5.03-5.12 (m, IH) 5.24 (d, IH, J=3.3) 5.87-6.00 (m, 2H), 6.64-6.73 (m, IH), 6.83-7.00 (m, 2H); ESI-MS m/z 610.4 (M+H)+。 化合物 Nl的制备 'H NMR (300MHz, CDC1 3 ) δ 0.89-1.02(m, 12H) 1.25-1.31 (m, 3H) 1.36-1.40 (m, 2H) 1.42 and 1.45 (2 xs, 9H) 1.51 -1.68 (m, 3H) ) 1.69-1.97 (m, 2H) 2.04-2.15 (m, IH) 2.19-2.57 (m, 4H) 3.22-3.40 (m, 2H) 4.11-4.35 (m, 3H) 4.47-4.61 (m, IH) 4.67 -4.78 (m, 2H) 5.03-5.12 (m, IH) 5.24 (d, IH, J=3.3) 5.87-6.00 (m, 2H), 6.64-6.73 (m, IH), 6.83-7.00 (m, 2H) ); ESI-MS m/z 610.4 (M+H)+. Preparation of Compound Nl
将 41 mg化合物 N2溶解在 2 ml CH2C12中,加入 0.5 ml TFA, 在 室温下反应 1小时,抽干溶剂。将得到的脱 Boc的底物溶解在 2 ml THF 41 mg of the compound N2 was dissolved in 2 ml of CH 2 C1 2 , 0.5 ml of TFA was added, and the mixture was reacted at room temperature for 1 hour, and the solvent was evaporated. Dissolve the resulting deBoc substrate in 2 ml THF
中, 加入 10 mg , 再加入 42 μΓΡΓ2ΝΕί, 然后加入 33 mg HATU。 在室温下反应 12小时, 依次用 1 M HC1、 饱和 NaHCO^_ 液、 饱和食盐水洗涤, 用 Na2S04干燥。 过滤, 减压蒸去溶剂, 快速 柱层析, 得到 34 mg产物 N1 , 收率 82%。 Medium, add 10 mg , add 42 μΓΡΓ 2 ΝΕί, then add 33 mg HATU. After reacting for 12 hours at room temperature, it was washed with 1 M HCl, saturated NaHCO^ solution, brine, and dried over Na 2 SO 4 . Filtration, evaporation of the solvent under reduced pressure and flash column chromatography afforded,
谱图数据如下: The spectrum data is as follows:
Ή NMR: δ (300 MHz, CDC13) 0.89 (s, 12H), 1.25-1.29 (m, 3H), 1.44 (d, 3H, J = 7.4 Hz), 1.50-1.92 (m, 5H), 2.04-2.17 (m, 2H), 2.20 -2.41 (m, 3H), 2.47 (s, 3H), 3.20-3.41 (m, 2H), 4.18 (q, 2H, J = 7.2 Hz), 4.32-4.43 (m, 1H), 4.57-4.79 (m, 2H), 4.85-4.97 (m, 1H), 5.93-6.00 (m, 1H), 6.46 (s, 1H), 6.82-6.92 (m, 1H), 7.47-7.93 (m, 3H); Ή NMR: δ (300 MHz, CDC1 3 ) 0.89 (s, 12H), 1.25-1.29 (m, 3H), 1.44 (d, 3H, J = 7.4 Hz), 1.50-1.92 (m, 5H), 2.04- 2.17 (m, 2H), 2.20 -2.41 (m, 3H), 2.47 (s, 3H), 3.20-3.41 (m, 2H), 4.18 (q, 2H, J = 7.2 Hz), 4.32-4.43 (m, 1H), 4.57-4.79 (m, 2H), 4.85-4.97 (m, 1H), 5.93-6.00 (m, 1H), 6.46 (s, 1H), 6.82-6.92 (m, 1H), 7.47-7.93 ( m, 3H);
ESI-MS m/z 619.3 (M+H)+。 采用与上述方法类似的方法制备以下化合物: ESI-MS m/z 619.3 (M+H)+. The following compounds were prepared in a similar manner to the above procedure:
Ή NMR (300 MHz, CDC13) δ 0.75-0.95 (m, 12H), 1.42 (d, J = 7.2Hz, 3H), 1.48-1.85 (m, 5H), 1.95-2.40 (m, 7H), 2.44 (s, 3H), 3.20-3.37 (m, 2H), 4.26-4.40 (m, 1H), 4.53-4.77 (m, 2H), 4.82-4.92 (m, 1H), 5.16 (s, 2H), 6.02 (dd, J = 5.7Hz, 15.9Hz, 1H), 6.44(s, 1H), 6.67 and 6.73(2 x brs, 1H), 6.87-7.95 (m, 1H), 7.28-7.43 (m, 5H), 7.45-7.67 (m, 1H), 7.34-7.84 (m 1H); ESI-MS w/ 681 (M+H)十。 NMR NMR (300 MHz, CDC1 3 ) δ 0.75-0.95 (m, 12H), 1.42 (d, J = 7.2 Hz, 3H), 1.48-1.85 (m, 5H), 1.95-2.40 (m, 7H), 2.44 (s, 3H), 3.20-3.37 (m, 2H), 4.26-4.40 (m, 1H), 4.53-4.77 (m, 2H), 4.82-4.92 (m, 1H), 5.16 (s, 2H), 6.02 (dd, J = 5.7 Hz, 15.9 Hz, 1H), 6.44 (s, 1H), 6.67 and 6.73 (2 x brs, 1H), 6.87-7.95 (m, 1H), 7.28-7.43 (m, 5H), 7.45-7.67 (m, 1H), 7.34-7.84 (m 1H); ESI-MS w/ 681 (M+H) ten.
Ή NMR (300 MHz, CDC13) δ 0.86-1.02(m, 12H), 1.37 (dd, J = 3.9Hz, 6.9Hz, 3H), 1.42, 1.43 and 1.44 (3 x s, 9H), 1.50-1.95 (m, 6H), 2.22— 2.55(m, 4H), 3.22-3.48 (m, 2H), 4.05-4.13 (m, 2H), 4.47-4.78 (m, 2H), 5.02-5.10 (m, 1H), 5.14-5.21 (m, 2H), 5.83-5.88 (m, 1H), 5.95-6.12 (m, 1H), 6.61-6.68 (m, 1H), 6.88-6.99 (m, 1H), 7.30-7.40 (m, 6H); NMR NMR (300 MHz, CDC1 3 ) δ 0.86-1.02 (m, 12H), 1.37 (dd, J = 3.9 Hz, 6.9 Hz, 3H), 1.42, 1.43 and 1.44 (3 xs, 9H), 1.50-1.95 ( m, 6H), 2.22—2.55(m, 4H), 3.22-3.48 (m, 2H), 4.05-4.13 (m, 2H), 4.47-4.78 (m, 2H), 5.02-5.10 (m, 1H), 5.14-5.21 (m, 2H), 5.83-5.88 (m, 1H), 5.95-6.12 (m, 1H), 6.61-6.68 (m, 1H), 6.88-6.99 (m, 1H), 7.30-7.40 (m , 6H);
ESI-MS m/z 672 (M+H)+。 实施例 4 ESI-MS m/z 672 (M+H) + . Example 4
SARS-CoV Mpro与小分子抑制剂的复合物的晶体制备、数据收集和结 构解析 Crystal preparation, data collection and structural analysis of a complex of SARS-CoV M pro with small molecule inhibitors
一、 材料与方法 I. Materials and methods
1 . 8八1½-( 0¥ ]\ ^°与小分子化合物 N1的复合物的晶体制备 1. Crystal preparation of a complex of small molecule compound N1 with 1 8 8 11⁄2-( 0¥ ]\ ^°
将 SARS-CoV!^^在大肠杆菌菌株 BL21 (DE3)中表达后进行进 一步分离纯化和结晶(参见: Yang H et al. 2003. The Crystal Structures of SARS Virus Main Protease Mpro and Its Complex with an Inhibitor. PNAS, 100(23): 13190-13195)。 将 Nl用 7.5% PEG 6000、 6% DMSO、 0.1 M MES (pH 6.0)的池液制备成 10 mM溶液后, 等体积加入晶体生 长的悬滴中, 291K静置 2天。 Will SARS-CoV! ^^ is further isolated, purified and crystallized after expression in E. coli strain BL21 (DE3) (see: Yang H et al. 2003. The Crystal Structures of SARS Virus Main Protease Mpro and Its Complex with an Inhibitor. PNAS, 100 (23) ): 13190-13195). After the N1 was prepared into a 10 mM solution with a pool of 7.5% PEG 6000, 6% DMSO, 0.1 M MES (pH 6.0), an equal volume was added to the hanging suspension of the crystal growth, and 291 K was allowed to stand for 2 days.
2. 8八1^-0^ ]\^°与小分子化合物 N1的复合物的数据收集和结构解 析 2. 8 8 1 ^ 0 ^ ] \ ^ ° and small molecular compound N1 complex data collection and structural analysis
( 1 ) 数据收集和数据处理 (1) Data collection and data processing
用 Rigaku αιΛ「α旋转靶 X光衍射仪完成, 数据收集时的系统参 数为电压 40 KV, 电流 20 mA, 波长 1.5418A, 温度 100K。 晶体在 30% PEG 400 0.1 M MES (pH 6.0)的防冻液中浸泡后, 用液氮流迅速 冷却至 100K。 晶体的衍射分辨率为 1.88Α。 所有的最终衍射数据用 HKL2000处理到 2.0 Α Completed with Rigaku αιΛ "α rotating target X-ray diffractometer, system parameters for data collection The voltage is 40 KV, the current is 20 mA, the wavelength is 1.5418A, and the temperature is 100K. The crystals were immersed in an antifreeze of 30% PEG 400 0.1 M MES (pH 6.0) and rapidly cooled to 100 K with a liquid nitrogen stream. The diffraction resolution of the crystal is 1.88 Å. All final diffraction data was processed to HKD2000 to 2.0 Α
(2) 结构解析 (2) Structure analysis
复合物的结构解析通过用 SARS-CoV MpTO的母体结构 (PDB code: 1UJ1 ) 为起始搜索模型, 用分子置换法进行结构解析。 用 CNS程序 做旋转函数和平移函数搜索, 可获得一个对称二体的清晰解。然后在 程序 0中利用 IFo-Fc和 Fo-Fc的差值图进行小分子模型的搭建。 经 过修正后, R k20.0, Rfree23.8 Composite structure analysis by using the parent structure of the SARS-CoV M pTO (PDB code: 1UJ1) as a starting search model, structural analysis by molecular replacement. Using the CNS program to do the rotation function and the translation function search, a clear solution of a symmetric two-body can be obtained. The small molecule model was then constructed using the difference maps of IFo-Fc and Fo-Fc in program 0. After correction, R k 20.0, R free 23.8
SARS-CoV ^^°与 N2 N3及 N4的复合物的晶体制备、 数据收 集和结构解析所采用的方法与 N1基本相同, 此处不再赘述。 二、 结构分析 The method of crystal preparation, data collection and structural analysis of the composite of SARS-CoV ^^° and N2 N3 and N4 is basically the same as that of N1, and will not be described here. Second, structural analysis
1 5八1^-0^ 1^")与小分子化合物 N1的复合物的结构分析 Structural Analysis of the Complex of 1 5 8 1^-0^ 1^" ) with Small Molecule Compound N1
8八1^-0^ ^1"°是一个同源二体结构,在一个不对称单位中含有 两个单体 A和 B, 由于小分子化合物 Nl与 A B两个单体的结合基 本类似, 现在仅分析 N1和 A的结合模式。 8 八 1^-0^ ^ 1 "° is a homodimeric structure containing two monomers A and B in one asymmetric unit, since the combination of the small molecule compound Nl and AB is basically similar. Now only analyze the combination mode of N1 and A.
在单体 A的 2Fo-Fc差值图 (countered at 1σ) 中, 可以清楚地观 察到 N1结合到了酶的底物结合口袋中。其中 N1中的 C 3与 A145-Cys 的 S7形成一键长为 1.8A的共价键。 N1酯基中的羰基氧与 A145-Cys 主碳链上的氨基形成 3.1A的氢键; 酯中的乙基与 A27-Len His-A41 和 Thr-A25的侧链形成疏水相互作用。 在 P1位点, 内酰胺五元环中 的氧与 His-163的 NE2形成 2.6A氢键。 在内酰胺环附近的一个水分 子能与 N1的内酰胺环上的 N His-172的 NE2以及 140-Phe和 Ser-Bl 的羰基氧分别形成 2.6A 3.2A, 2.6人和 2.7人的氢键, 使得内酰胺环 牢固地结合在 S1 口袋中。 由于整个冠状病毒家族的主蛋白酶的 P1 位点非常保守, 并总是以 Q 的形式出现, 因此, 占据相应的底物结 合口袋 S1是抑制蛋白酶活性的一个关键。 对于 N1的 P2位点而言, 小分子的 Leu侧链很容易地插入由 His-41, Met-49和 Phe-181侧链, 以及 Gln-189 和 Asp-187 的侧链的烷基部分组成的疏水口袋中。 His- 164中的羰基氧与 N1中的靠近酯基一侧的肽键中的 N形成 2.9A 的氢键, N1中的 Val的羰基氧与 GKI-A166中的 N形成 2.9A氢键, Val肽键中的 N与 G1U-A166羰基氧形成 3.0A的氢键, N1中 Ala肽 键中的 N与 Thr-190 的羰基氧形成 3.2A 的氢键。 Ala 的侧链插入 Phe-185 , Glu-192, Leu- 167, Met- 165 侧链组成的疏水口袋中。 N1 中末端的杂环与 Pro-168的五元环之间有疏水作用。所有这些共价键、 氢键和疏水相互作用使得抑制剂化合物 N1牢固地结合在酶的底物活 性口袋, 从而造成酶的失活。 In the 2Fo-Fc difference map (countered at 1σ) of monomer A, it was clearly observed that N1 binds to the substrate binding pocket of the enzyme. Among them, C 3 in N1 forms a covalent bond with S 7 of A145-Cys having a bond length of 1.8A. The carbonyl oxygen in the N1 ester group forms a hydrogen bond with the amino group on the A145-Cys main carbon chain; the ethyl group in the ester forms a hydrophobic interaction with the side chains of A27-Len His-A41 and Thr-A25. At the P1 site, the oxygen in the five-membered ring of the lactam forms a 2.6A hydrogen bond with NE2 of His-163. A water molecule near the lactam ring can form a 2.6A 3.2A, 2.6 person and 2.7 human hydrogen bond with NE2 of N His-172 on the lactam ring of N1 and carbonyl oxygen of 140-Phe and Ser-Bl, respectively. , allowing the lactam ring to be firmly bonded in the S1 pocket. P1 due to the major protease of the entire coronavirus family The site is very conserved and always appears in the form of Q, therefore, occupying the corresponding substrate binding pocket S1 is a key to inhibiting protease activity. For the P2 site of N1, the small molecule Leu side chain is easily inserted into the side chain of His-41, Met-49 and Phe-181, and the alkyl moiety of the side chain of Gln-189 and Asp-187. In the hydrophobic pocket. The carbonyl oxygen in His-164 forms a hydrogen bond of 2.9A with N in the peptide bond near the ester group side in N1, and the carbonyl oxygen of Val in N1 forms a 2.9A hydrogen bond with N in GKI-A166, Val N in the peptide bond forms a hydrogen bond of 3.0A with the G1U-A166 carbonyl oxygen, and N in the Ala peptide bond in N1 forms a hydrogen bond of 3.2A with the carbonyl oxygen of Thr-190. The side chain of Ala is inserted into a hydrophobic pocket consisting of Phe-185, Glu-192, Leu-167, Met-165 side chains. The heterocyclic ring at the end of N1 has a hydrophobic interaction with the five-membered ring of Pro-168. All of these covalent bonds, hydrogen bonds, and hydrophobic interactions allow the inhibitor compound N1 to bind tightly to the substrate active pocket of the enzyme, thereby causing inactivation of the enzyme.
2. N2和 N3的结合与 N1基本类似, 这里不再赘述。 实施例 5 2. The combination of N2 and N3 is basically similar to that of N1, and will not be described here. Example 5
小分子化合物 Nl、 N2、 N3和 N4对来源于各种不同冠状病毒的主蛋 白酶的抑制活性 Small molecule compounds Nl, N2, N3 and N4 inhibit the main protease from various coronaviruses
一、 材料与方法 I. Materials and methods
1. Nl、 N2、 N3和 N4对 SARS-CoV Mpro的抑制活性的测定 1. Determination of inhibitory activities of N1, N2, N3 and N4 on SARS-CoV M pro
在缓冲液 (20 mM Tris-HCl H 7.0, 1 mM DTT ) 中, 加入 SARS-CoV Mpro (终浓度 1 μΜ),化合物 Nl (终浓度 100 μΜ), 298 Κ 放置 10 分钟后, 迅速加入荧光标记底物 (MCA-AVLQ SGFRL(DNP)L-NH2, 5 μΜ)。 激发波长和发射波长分别为 330 ηΜ和 395 nm, 温度保持 298 K, 每 2秒钟记录一次荧光读数。 In a buffer (20 mM Tris-HCl H 7.0, 1 mM DTT), add SARS-CoV M pro (final concentration 1 μΜ), compound Nl (final concentration 100 μΜ), 298 Κ for 10 minutes, then quickly add fluorescence Label the substrate (MCA-AVLQ SGFRL (DNP) L-NH 2 , 5 μΜ). The excitation and emission wavelengths were 330 η Μ and 395 nm, respectively, and the temperature was maintained at 298 K. Fluorescence readings were recorded every 2 seconds.
Ν2、 Ν3和 Ν4的抑制活性的测定方法与 N1基本相同。 The method for measuring the inhibitory activities of Ν2, Ν3 and Ν4 is basically the same as that of N1.
对照: 不加入抑制剂, 其余条件相同。 结果示于图 3中。 Control: No inhibitor was added and the rest of the conditions were the same. The results are shown in Figure 3.
2. N1对传染性胃肠炎病毒 (TGEV) 主蛋白酶的抑制活性的测定 在缓冲液(20mMTris-HClpH7.0, ImMDTT) 中, 加入所述蛋 白酶(1μΜ), 化合物 Nl (100 μΜ), 298 Κ放置 10分钟后, 迅速加 入荧光标记底物 (MCA-AVLQSGFRL(DNP)L-NH2, 5μΜ)。 激发波 长和发射波长分别为 330 ηΜ和 395 nm, 温度保持 298 K, 每 2秒钟 记录一次荧光读数。 然后改变抑制剂浓度, 分别在 10 ηΜ、 1 μΜ下 测定抑制活性。 对照: 不加入抑制剂, 其余条件相同。 结果示于图 4 中。 2. Determination of inhibitory activity of N1 against infectious gastrointestinal virus (TGEV) major protease In the buffer (20 mM Tris-HCl pH 7.0, ImMDTT), the protease (1 μM), compound Nl (100 μM), 298 Κ was added for 10 minutes, and then the fluorescently labeled substrate (MCA-AVLQSGFRL (DNP) L was quickly added. -NH 2 , 5 μΜ). The excitation and emission wavelengths were 330 η Μ and 395 nm, respectively, and the temperature was maintained at 298 K. Fluorescence readings were recorded every 2 seconds. Then, the inhibitor concentration was changed, and the inhibitory activity was measured at 10 η Torr and 1 μ 分别, respectively. Control: No inhibitor was added and the rest of the conditions were the same. The results are shown in Figure 4.
3. N1对人冠状病毒 (HCoV) 229E主蛋白酶的抑制活性的测定 3. Determination of the inhibitory activity of N1 on human coronavirus (HCoV) 229E main protease
在缓冲液(20mMTris-HClpH7.0, 1 mMDTT) 中, 加入所述蛋 白酶 (0.1μΜ), 化合物 Nl (100 μΜ), 298 Κ放置 10分钟后, 迅速 加入荧光标记底物 (MCA-AVLQSGFRL(DNP)L-NH2, 5 μΜ)。 激发 波长和发射波长分别为 330 ηΜ和 395 nm, 温度保持 298 K, 每 2秒 钟记录一次荧光读数。 对照: 不加入抑制剂, 其余条件相同。 结果示 于图 5中。 In the buffer (20 mM Tris-HCl pH 7.0, 1 mMDTT), the protease (0.1 μM), compound Nl (100 μM), 298 Κ was placed for 10 minutes, and then the fluorescently labeled substrate (MCA-AVLQSGFRL (DNP) was rapidly added. ) L-NH 2 , 5 μΜ). The excitation and emission wavelengths were 330 η Μ and 395 nm, respectively, and the temperature was maintained at 298 K. Fluorescence readings were recorded every 2 seconds. Control: No inhibitor was added and the rest of the conditions were the same. The results are shown in Figure 5.
4. N1对猫传染性腹膜炎病毒(FIPV)的主蛋白酶的抑制活性的测定 方法同 3, 结果示于图 6中。 4. Determination of the inhibitory activity of N1 against the main protease of feline infectious peritonitis virus (FIPV) The same method as in 3, the results are shown in Fig. 6.
5. N1 对禽传染性支气管炎病毒 (AIBV) 的主蛋白酶的抑制活性的 测定 5. Determination of the inhibitory activity of N1 against the main protease of avian infectious bronchitis virus (AIBV)
在缓冲液 (20 mMTris-HClpH 7.0, 1 mMDTT) 中, 加入所述蛋 白酶 (0.1μΜ), 化合物 Nl (100μΜ), 298 Κ放置 10分钟后, 迅速 加入荧光标记底物 (MCA-AVLQSGFRL(DNP)L-NH2, 5 μΜ)。 激发 波长和发射波长分别为 330 ηΜ和 395 nm, 温度保持 298 K, 每 2秒 钟记录一次荧光读数。 对照: 不加入抑制剂, 其余条件相同。 结果示 于图 7中。 In the buffer (20 mMTris-HCl pH 7.0, 1 mMDTT), the protease (0.1 μΜ), compound Nl (100 μΜ), 298 Κ was added for 10 minutes, and then the fluorescently labeled substrate (MCA-AVLQSGFRL (DNP) was quickly added. L-NH 2 , 5 μΜ). The excitation and emission wavelengths were 330 η Μ and 395 nm, respectively, and the temperature was maintained at 298 K. Fluorescence readings were recorded every 2 seconds. Control: No inhibitor was added and the rest of the conditions were the same. The results are shown in Fig. 7.
FIPV, HCoV、 TGEV 的表达纯化参考文献: Conservation of substrate specificities among coronavirus main proteases. J. Gen. Virol. 2002; 83(Pt 3): 595-9。 Expression and purification of FIPV, HCoV, TGEV References: Conservation of substrate specificities among coronavirus main proteases. J. Gen. Virol. 2002; 83 (Pt 3): 595-9.
二、 结果与分析 Second, the results and analysis
1. Nl、 N2、 N3和 N4对 SARS-CoV Mpf°的抑制活性 1. Inhibitory activity of Nl, N2, N3 and N4 on SARS-CoV M pf °
由图 3中可以看出, Nl、 N2、 N3和 N4对 SARS-CoV Mpro都有 抑制活性, 而且 N1的抑制活性最强。 As can be seen from Fig. 3, Nl, N2, N3 and N4 have inhibitory activities against SARS-CoV M pro , and N1 has the strongest inhibitory activity.
2. N1对其他冠状病毒主蛋白酶的抑制活性 2. Inhibitory activity of N1 against other major proteases of coronavirus
从 N1对其他冠状病毒主蛋白酶的抑制活性测定 (即图 4一图 7) 中可知, N1对 TGEV、 HCoV、 FIPV和 AIBV的主蛋白酶都有抑制 活性, 其中对 TGEV的主蛋白酶的抑制活性最强, 在 ΙΟ ιιΜ的条件 下, N1对 TGEV主蛋白酶仍然有抑制活性。 From the inhibition activity of N1 against other coronavirus main proteases (ie, Fig. 4 to Fig. 7), N1 has an inhibitory activity against the main proteases of TGEV, HCoV, FIPV and AIBV, and the most inhibitory activity against the main protease of TGEV. Strong, under the condition of ΙΟ ιιΜ, N1 still has inhibitory activity against TGEV main protease.
由于 TGEV、 HCoV、 FIPV属于冠状病毒科的 I型 (血清型), AIBV属于 III型, SARS-CoV属于 IV型, 因此, 可以推断 N1对整 个冠状病毒家族的主蛋白酶都有抑制活性。 本文中所涉及的参考文献,包括专利文件、学术论文、出版物等, 均以引用的方式将其全部内容包括在本文中。 Since TGEV, HCoV, and FIPV belong to the type I (serotype) of the Coronavirus family, AIBV belongs to type III, and SARS-CoV belongs to type IV. Therefore, it can be inferred that N1 has inhibitory activity against the major protease of the entire coronavirus family. References referred to herein, including patent documents, academic papers, publications, etc., are hereby incorporated by reference in their entirety.
应当注意,本发明中所涉及的各种实验操作均为本领域的常规技 术, 如果在文中没有特别说明, 则本领域的普通技术人员可以参照本 申请申请日之前的各种常用工具书、科技文献或相关的说明书、手册 等加以实施。 It should be noted that the various experimental operations involved in the present invention are conventional techniques in the art. If not specifically described herein, those skilled in the art can refer to various commonly used reference books and technologies before the filing date of the present application. Documents or related manuals, manuals, etc. are implemented.
本文中所涉及的各种实验用品(包括但不限于: 化学试剂、 生物 制品、细胞、生物体、仪器等)之中, 对于那些特殊的或不易获得的, 文中均已注明了制造商、参考文献或详细的制备方法; 未经特别说明 的,均为常规实验用品,在本申请申请日之前,可以通过各种方式(例 如购买、 自行制备等) 很方便地获得。 Among the various experimental products (including but not limited to: chemical reagents, biological products, cells, organisms, instruments, etc.) involved in this article, for those special or difficult to obtain, the manufacturer has been identified in the text. Reference documents or detailed preparation methods; unless otherwise specified, are conventional laboratory articles, which can be conveniently obtained by various means (for example, purchase, self-preparation, etc.) before the filing date of the present application.
应当理解, 在不偏离本发明的精神和范围的情况下, 本领域的普 通技术人员可以在形式和细节上对其做出各种改变和改进,而这些均 被认为落入本发明的保护范围中。 It is to be understood that various changes and modifications can be made in the form and details without departing from the spirit and scope of the invention, which are considered to fall within the scope of the present invention. in.
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|---|---|---|---|---|
| EP3455205A4 (en) * | 2016-05-13 | 2020-01-01 | Emory University | PEPTIDOMIMETICS FOR THE TREATMENT OF NOROVIRUS INFECTION |
| EP3912628A1 (en) * | 2020-05-20 | 2021-11-24 | Institut de Recherche en Semiochimie et Ethologie Appliquée | Nucleoside analogues to inhibit the main protease of a coronavirus |
| EP4263502B1 (en) * | 2020-12-18 | 2024-12-25 | Nxera Pharma UK Limited | Sars-cov-2 mpro inhibitor compounds |
Families Citing this family (8)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CN103044338B (en) * | 2012-12-12 | 2016-08-03 | 天津医科大学总医院 | MiR-21 micromolecular inhibitor and application |
| CN104592349A (en) * | 2015-02-15 | 2015-05-06 | 天津国际生物医药联合研究院 | Small molecule inhibitor of coronavirus main proteases as well as preparation method and application of small molecule inhibitor |
| CN105412151A (en) * | 2015-12-11 | 2016-03-23 | 天津国际生物医药联合研究院 | Inhibitor aiming at coronavirus main protease, and application of Zn<2+> |
| CN105837487A (en) * | 2016-03-17 | 2016-08-10 | 天津国际生物医药联合研究院 | Small-molecule inhibitor against MERS-CoV main protease, and preparation method and application thereof |
| US20230293457A1 (en) * | 2020-02-26 | 2023-09-21 | Shanghaitech University | Application of disulfiram in coronavirus resistance |
| US11351149B2 (en) * | 2020-09-03 | 2022-06-07 | Pfizer Inc. | Nitrile-containing antiviral compounds |
| CN114149415A (en) * | 2021-07-26 | 2022-03-08 | 中国药科大学 | Peptide-like compound and derivative, preparation method, pharmaceutical composition and application thereof |
| CN117209558B (en) * | 2023-08-14 | 2024-09-17 | 北京大学深圳研究生院 | Use of Mpro protein inhibitors in medicaments for the treatment of novel coronavirus infections |
Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1998043950A1 (en) * | 1997-03-28 | 1998-10-08 | Agouron Pharmaceuticals, Inc. | Antipicornaviral compouds, compositions containing them, and methods for their use |
| WO1999057135A1 (en) * | 1998-04-30 | 1999-11-11 | Agouron Pharmaceuticals, Inc. | Antipicornaviral compounds, their preparation and use |
| US6355807B1 (en) * | 1999-08-24 | 2002-03-12 | Agouron Pharmaceuticals, Inc. | Efficient synthetic routes for the preparation of rhinovirus protease inhibitors and key intermediates |
| WO2005066123A1 (en) * | 2003-12-31 | 2005-07-21 | Taigen Biotechnology | Protease inhibitors |
-
2004
- 2004-10-22 CN CNB2004100877217A patent/CN100363346C/en not_active Expired - Fee Related
-
2005
- 2005-10-24 WO PCT/CN2005/001748 patent/WO2006042478A1/en not_active Ceased
Patent Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| WO1998043950A1 (en) * | 1997-03-28 | 1998-10-08 | Agouron Pharmaceuticals, Inc. | Antipicornaviral compouds, compositions containing them, and methods for their use |
| WO1999057135A1 (en) * | 1998-04-30 | 1999-11-11 | Agouron Pharmaceuticals, Inc. | Antipicornaviral compounds, their preparation and use |
| US6355807B1 (en) * | 1999-08-24 | 2002-03-12 | Agouron Pharmaceuticals, Inc. | Efficient synthetic routes for the preparation of rhinovirus protease inhibitors and key intermediates |
| WO2005066123A1 (en) * | 2003-12-31 | 2005-07-21 | Taigen Biotechnology | Protease inhibitors |
Non-Patent Citations (4)
| Title |
|---|
| DRAGOVICH P S ET AL: "Structure-Based Design, Synthesis, and Biological Evaluation of Irreversible Human Rhinovirus 3C Protease Inhibitors. 4. Incorporation of P1 Lactam Moieties as L-Glutamine Replacements.", JOURNAL OF MEDICINAL CHEMISTRY., vol. 42, no. 7, 1999, pages 1213 - 1224 * |
| MA D ET AL: "An efficient and tunable route to AG7088, a rhinovirus protease inhibitor.", TETRAHEDRON LETTERS., vol. 45, no. 43, pages 8103 - 8105 * |
| WEBBER S E ET AL: "Design and synthesis of irreversible depsipeptidyl human rhinovirus 3C protease inhibitors.", BIOORGANIC & MEDICINAL CHEMISTRY LETTERS., vol. 11, no. 20, 2001, pages 8 - 9 * |
| ZHANG R ET AL: "Liquid chromatography-mass spectometry and liquid chromatography-NMR characterization of in vitro metabolites of a potent and irreversible peptidomimetic inhibitor of rhinovirus 3C protease.", DRUG METABOLISM AND DISPOSITION., vol. 29, no. 5, 2001, pages 729 - 734 * |
Cited By (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP3455205A4 (en) * | 2016-05-13 | 2020-01-01 | Emory University | PEPTIDOMIMETICS FOR THE TREATMENT OF NOROVIRUS INFECTION |
| US11021513B2 (en) | 2016-05-13 | 2021-06-01 | Emory University | Peptidomimetics for the treatment of norovirus infection |
| EP3912628A1 (en) * | 2020-05-20 | 2021-11-24 | Institut de Recherche en Semiochimie et Ethologie Appliquée | Nucleoside analogues to inhibit the main protease of a coronavirus |
| WO2021234127A1 (en) * | 2020-05-20 | 2021-11-25 | Institut de Recherche en Semiochimie et Ethologie Appliquee | NUCLEOSIDE ANALOGUE TO INHIBIT THE MAIN PROTEASE OF SARS-CoV-2 VIRUS |
| WO2021234128A1 (en) * | 2020-05-20 | 2021-11-25 | Institut de Recherche en Semiochimie et Ethologie Appliquee | Nucleoside analogues to inhibit the main protease of a coronavirus |
| EP4263502B1 (en) * | 2020-12-18 | 2024-12-25 | Nxera Pharma UK Limited | Sars-cov-2 mpro inhibitor compounds |
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