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WO2005098040A3 - Reactions de codage et de decodage pour detection de molecules cibles - Google Patents

Reactions de codage et de decodage pour detection de molecules cibles Download PDF

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Publication number
WO2005098040A3
WO2005098040A3 PCT/US2005/010184 US2005010184W WO2005098040A3 WO 2005098040 A3 WO2005098040 A3 WO 2005098040A3 US 2005010184 W US2005010184 W US 2005010184W WO 2005098040 A3 WO2005098040 A3 WO 2005098040A3
Authority
WO
WIPO (PCT)
Prior art keywords
present
ligation
encoding
reaction
target molecules
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/US2005/010184
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English (en)
Other versions
WO2005098040A8 (fr
WO2005098040A2 (fr
Inventor
Mark R Andersen
Kenneth J Livak
Adam Broomer
Caifu Chen
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Applied Biosystems Inc
Original Assignee
Applera Corp
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Applera Corp filed Critical Applera Corp
Priority to AT05760637T priority Critical patent/ATE431433T1/de
Priority to EP05760637A priority patent/EP1727913B8/fr
Priority to JP2007505241A priority patent/JP2007530051A/ja
Priority to DE602005014453T priority patent/DE602005014453D1/de
Publication of WO2005098040A2 publication Critical patent/WO2005098040A2/fr
Publication of WO2005098040A8 publication Critical patent/WO2005098040A8/fr
Publication of WO2005098040A3 publication Critical patent/WO2005098040A3/fr
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6851—Quantitative amplification

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • Molecular Biology (AREA)
  • Biophysics (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)

Abstract

L'invention concerne des procédés, des réactifs et des assortiments de matériel permettant de détecter la présence ou l'absence (ou de quantifier) des séquences polynucléotidiques et des protéine cibles dans au moins un échantillon au moyen de réactions de codage et de décodage. Lorsqu'un polynucléotide cible particulier est présent dans un échantillon par exemple, cette réaction de codage entraîne la formation d'un produit réactionnel contenant des parties amorces adressables. Lors de la réaction d'amplification permettant le décodage, au moins une sonde de marquage et au moins une amorce d'adressage peuvent être utilisées, de manière à fournir un signal détectable dépendant de la présence ou de l'absence d'une séquence. Dans certains modes de mise en oeuvre, le codage comprend une réaction de ligation avec des sondes à séquences de liaison, et une analyse des polymorphismes mononucléotidiques (SNP).
PCT/US2005/010184 2004-03-24 2005-03-24 Reactions de codage et de decodage pour detection de molecules cibles Ceased WO2005098040A2 (fr)

Priority Applications (4)

Application Number Priority Date Filing Date Title
AT05760637T ATE431433T1 (de) 2004-03-24 2005-03-24 Ligation und amplifikationsreaktionen zur bestimmung von zielmolekülen
EP05760637A EP1727913B8 (fr) 2004-03-24 2005-03-24 Reactions de ligature et d'amplification pour detection de molecules cibles
JP2007505241A JP2007530051A (ja) 2004-03-24 2005-03-24 標的分子を決定するためのライゲーション反応および増幅反応
DE602005014453T DE602005014453D1 (de) 2004-03-24 2005-03-24 Ligation und amplifikationsreaktionen zur bestimmung von zielmolekülen

Applications Claiming Priority (10)

Application Number Priority Date Filing Date Title
US55615704P 2004-03-24 2004-03-24
US55616304P 2004-03-24 2004-03-24
US55622404P 2004-03-24 2004-03-24
US55616204P 2004-03-24 2004-03-24
US60/556,162 2004-03-24
US60/556,157 2004-03-24
US60/556,224 2004-03-24
US60/556,163 2004-03-24
US63068104P 2004-11-24 2004-11-24
US60/630,681 2004-11-24

Publications (3)

Publication Number Publication Date
WO2005098040A2 WO2005098040A2 (fr) 2005-10-20
WO2005098040A8 WO2005098040A8 (fr) 2005-12-01
WO2005098040A3 true WO2005098040A3 (fr) 2006-03-23

Family

ID=35064420

Family Applications (2)

Application Number Title Priority Date Filing Date
PCT/US2005/010184 Ceased WO2005098040A2 (fr) 2004-03-24 2005-03-24 Reactions de codage et de decodage pour detection de molecules cibles
PCT/US2005/009882 Ceased WO2005094532A2 (fr) 2004-03-24 2005-03-24 Reactions de codage et de decodage permettant de determiner des polynucleotides cibles

Family Applications After (1)

Application Number Title Priority Date Filing Date
PCT/US2005/009882 Ceased WO2005094532A2 (fr) 2004-03-24 2005-03-24 Reactions de codage et de decodage permettant de determiner des polynucleotides cibles

Country Status (6)

Country Link
US (2) US7601821B2 (fr)
EP (3) EP2161346B1 (fr)
JP (2) JP2007530051A (fr)
AT (2) ATE399884T1 (fr)
DE (2) DE602005014453D1 (fr)
WO (2) WO2005098040A2 (fr)

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WO2005108618A2 (fr) * 2004-04-30 2005-11-17 Applera Corporation Procedes et kits de detection de methylation
US7427479B2 (en) * 2004-04-30 2008-09-23 Applera Corporation Methods and kits for identifying target nucleotides in mixed populations
US7575863B2 (en) 2004-05-28 2009-08-18 Applied Biosystems, Llc Methods, compositions, and kits comprising linker probes for quantifying polynucleotides
US20060019288A1 (en) * 2004-06-30 2006-01-26 Applera Corporation Methods, reaction mixtures, and kits for ligating polynucleotides
US7642055B2 (en) * 2004-09-21 2010-01-05 Applied Biosystems, Llc Two-color real-time/end-point quantitation of microRNAs (miRNAs)
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US8597938B2 (en) * 2007-10-12 2013-12-03 Qiagen Sciences Llc System for providing control reactions for real time RT-PCR
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EP3572528A1 (fr) 2010-09-24 2019-11-27 The Board of Trustees of the Leland Stanford Junior University Capture directe, amplification et séquençage d'adn cible à l'aide d'amorces immobilisées
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Also Published As

Publication number Publication date
EP1727913B1 (fr) 2009-05-13
ATE431433T1 (de) 2009-05-15
DE602005014453D1 (de) 2009-06-25
EP1730312A2 (fr) 2006-12-13
WO2005098040A8 (fr) 2005-12-01
EP2161346A1 (fr) 2010-03-10
EP1727913A2 (fr) 2006-12-06
US20050260640A1 (en) 2005-11-24
DE602005007874D1 (de) 2008-08-14
US20050272071A1 (en) 2005-12-08
EP1727913B8 (fr) 2009-08-19
WO2005098040A2 (fr) 2005-10-20
WO2005094532A2 (fr) 2005-10-13
WO2005094532A3 (fr) 2005-12-22
ATE399884T1 (de) 2008-07-15
EP2161346B1 (fr) 2013-06-19
EP1730312B1 (fr) 2008-07-02
US7601821B2 (en) 2009-10-13
JP2007530051A (ja) 2007-11-01
US7604937B2 (en) 2009-10-20
JP2007530048A (ja) 2007-11-01

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