WO2002102417A1 - Vector and the use thereof in gene therapy methods - Google Patents
Vector and the use thereof in gene therapy methods Download PDFInfo
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- WO2002102417A1 WO2002102417A1 PCT/EP2002/006234 EP0206234W WO02102417A1 WO 2002102417 A1 WO2002102417 A1 WO 2002102417A1 EP 0206234 W EP0206234 W EP 0206234W WO 02102417 A1 WO02102417 A1 WO 02102417A1
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/63—Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
- C12N15/79—Vectors or expression systems specially adapted for eukaryotic hosts
- C12N15/85—Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
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- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/005—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from viruses
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- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
- C12N15/62—DNA sequences coding for fusion proteins
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- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K48/00—Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
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- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/01—Fusion polypeptide containing a localisation/targetting motif
- C07K2319/10—Fusion polypeptide containing a localisation/targetting motif containing a tag for extracellular membrane crossing, e.g. TAT or VP22
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- C12N2710/00—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
- C12N2710/00011—Details
- C12N2710/16011—Herpesviridae
- C12N2710/16611—Simplexvirus, e.g. human herpesvirus 1, 2
- C12N2710/16622—New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
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- C12N2740/00—Reverse transcribing RNA viruses
- C12N2740/00011—Details
- C12N2740/10011—Retroviridae
- C12N2740/16011—Human Immunodeficiency Virus, HIV
- C12N2740/16311—Human Immunodeficiency Virus, HIV concerning HIV regulatory proteins
- C12N2740/16322—New viral proteins or individual genes, new structural or functional aspects of known viral proteins or genes
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- C12N2830/00—Vector systems having a special element relevant for transcription
- C12N2830/38—Vector systems having a special element relevant for transcription being a stuffer
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
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- C12N2830/00—Vector systems having a special element relevant for transcription
- C12N2830/42—Vector systems having a special element relevant for transcription being an intron or intervening sequence for splicing and/or stability of RNA
Definitions
- the present invention relates to a vector, in particular a plasmid vector for gene therapy purposes, in particular for somatic gene therapy, pharmaceutical compositions containing this plasmid vector and uses and methods using this plasmid vector.
- Gene therapy methods are methods for correcting hereditary diseases using genetic engineering methodology by replacing one or more defective genes, by additionally introducing the normal gene or by introducing a gene which compensates for the effect of the defective gene.
- Gene therapy methods are currently still in the experimental stage on animals.
- germline gene therapy In the course of germline gene therapy, the genetic defect in the early embryonic stage is remedied, so that the germ cells of the individual are also affected and the changed genetic information is passed on to the offspring.
- Somatic gene therapy eliminates genetic defects solely in organisms developed in the body cells, for example by transmitting a gene that has normal function. The genetic material passed on to the offspring therefore still contains the genetic defect.
- the body cells to be treated are first removed from the body, finally, the desired genetic changes in the cells are carried out in vitro, and as a rule selected cells transformed by transforming the target cells with the gene used for gene therapy and then reimplanted in the patient.
- a prerequisite is also the provision of the largest possible number of cells transformed with the desired gene.
- the transformation that is to say the introduction of genetic material into the cells, usually takes place by means of chemical-physical methods, for example microinjection of DNA, or by using vectors, for example retroviruses, adenoviruses, herpes simplex viruses, DNA-containing liposomes or plasmid vectors.
- viral vectors are known which are proposed for use in gene therapy processes and are capable of generating genetics Introduce material into target cells.
- Polymeric gene carriers are known from WO 99/59546 which can introduce nucleic acids into cells.
- WO 98/40502 describes peptide- or protein-containing compositions which, in addition to a transfection agent, also contain nucleic acids and can be used for gene therapy processes.
- US 5,804,604 and US 5,674,980 describe the use of a plasmid for therapeutic purposes.
- This plasmid encodes a fusion protein, comprising a basic region of the HIV-TAT transport protein (HIV: human immunodeficiency virus) and the Papillo avirus E2 repressor.
- the fusion protein formed from the TAT transport protein part and the E2 repressor protein serves as a transport vehicle for the introduction of peptides, macromolecules or smaller molecules such as nucleic acids or polysaccharides into target cells.
- WO 87/02989 describes the HIV TAT-3 protein and plasmids which have nucleic acid sequences coding for this protein. It is disclosed that the recombinant TAT-3 protein can be used for the diagnosis and therapy of HIV infections.
- the transformation processes described in the context of gene therapy have the disadvantage of comparatively low efficiency.
- the number of transformed cells necessary for a gene therapy promising approach is difficult or impossible to achieve.
- the described methods also frequently have the disadvantage that the expression rate in the transformed cells is not high enough to be expected to have a therapeutic effect. It has proven to be particularly disadvantageous that some tissues or organs such as the brain are difficult to reach for metabolic products and, because of the blood / brain barrier, cannot be supplied with proteins by other organs. Somatic gene therapy is particularly problematic in such tissues or organs.
- the present invention is therefore based on the technical problem of providing means and methods which ensure the high transformation and expression rate of genes of interest which is necessary for a successful gene therapeutic method.
- the present invention solves the technical problem on which it is based by providing a vector for gene therapy purposes, comprising at least one nucleotide sequence coding for a translocation sequence selected from the group consisting of a nucleotide sequence coding for the HSV VP22 protein (HSV-VP22) : Elliott and O'Hare Cell (1997) 88, 223-233), a nucleotide sequence encoding the HIV-TAT protein transduction domain and a nucleotide sequence encoding the Antennipedia peptide (Antennipedia: Derozzi et al., J. Biol. Chem. (1994) 269, 10444-10450, Helix der Ho eodomäne: RQIKIWFGNRRMKWKK), SEQ ID No. 4).
- a vector for gene therapy purposes comprising at least one nucleotide sequence coding for a translocation sequence selected from the group consisting of a nucleotide sequence coding for the HSV VP22 protein (
- such a vector is designed as a plasmid vector, viral vector or liposome.
- a plasmid vector comprising operatively linked to one another in the 5 'to 3' direction at least one constitutively expressing promoter, the nucleotide sequence coding for at least one translocation sequence, a NotI cloning site for the insertion of at least one nucleotide sequence which is useful in gene therapy and a polyadenylation site.
- a plasmid vector is preferably provided for gene therapy purposes, the translocation sequence comprising the 11 amino acids YGRKKRRQRRR (SEQ ID No. 2) of the naturally occurring HIV-TAT lead peptide.
- the translocation sequence comprises the 11 amino acids YARAAARQARA (SEQ ID No. 5) of an HIV-TAT lead peptide modified by targeted amino acid exchanges.
- a plasmid vector for gene therapy purposes is preferably provided, which is referred to as pCURE (FIG. 1), comprising in operative linkage and in 5 'to 3' orientation at least one constitutively expressing promoter, at least one coding for a ribosome binding site (RBS) Nucleotide sequence, at least one nucleotide sequence encoding the HIV-TAT lead peptide, in particular encoding the 11 amino acids YGRKKRRQRRR (SEQ ID No. 2), an NotI cloning site for the insertion of a nucleotide sequence which is useful for gene therapy, in particular a gene therapy-meaningful gene site, and a polyaden ,
- RBS ribosome binding site
- the plasmid vectors according to the invention are characterized by a translocation sequence, in particular a nucleotide sequence coding for HIV-TAT leader peptide sequence, which is linked directly and seamlessly in reading frame to a nucleotide sequence coding for example a therapeutically meaningful protein or protein fragment, so that in the course of the transcription and translation in particular a HIV-TAT leader peptide sequence or a modified HIV Fusion protein having a TAT lead peptide sequence is formed in the target cell, that is to say the cell to be transformed or transformed.
- a translocation leader sequence leader peptide sequence or translocation signal
- 11 amino acids i.e.
- the protein transduction domain of the HIV-TAT protein which is preferably provided according to the invention, surprisingly enables the fusion protein formed in a target cell to be exported from the transformed cell and imported into at least one another cell, especially crossing the blood-brain barrier. It was surprisingly found that the translocation property of a modified HIV-TAT protein transduction domain, in particular with an amino acid sequence as shown in SEQ ID No. 5, as a leading peptide improves even further compared to the naturally occurring protein-transduction domain of the HIV-TAT protein is.
- the fusion protein encoded by the vector according to the invention is therefore suitable for intercellular transport.
- the use of the plasmid vector according to the invention also leads to an increased number of transformed cells with intact protein, each with DNA-transformed cell, according to the invention.
- the plasmid vector according to the invention is extremely small and can therefore also be large and / or record several genes or gene segments that are useful in gene therapy.
- the insertion of the genes or gene segments which are meaningful in gene therapy is carried out by means of the inventively preferred, that is to say only once in the vector, that is to say “unique” NotI interface, which lies immediately behind the nucleotide sequence coding for the leading peptide or overlaps with it.
- plasmid is provided with developmental or tissue-specific or regulatable regulatory elements, for example promoters or enhancers, which are a multiple cloning site are inserted into the vector.
- developmental or tissue-specific or regulatable regulatory elements for example promoters or enhancers, which are a multiple cloning site are inserted into the vector.
- the invention in a particularly preferred embodiment, it is provided to provide a multiple cloning site for the insertion of at least one regulatory element in the plasmid vector according to the invention, in particular this - in the 5 'to 3' direction - between a constitutively expressing promoter and a ribosome binding site insert le.
- the constitutively expressing is the CMV promoter.
- the translocation sequence comprises a modified amino acid sequence which results from the amino acid sequence SEQ ID No. 2 by addition, deletion or exchange of at least one amino acid, preferably ⁇ amino acids.
- the amino acids glycine, lysine and / or arginine are replaced by the amino acid alanine.
- the plasmid vector is preferred, wherein the translocation sequence comprises a modified amino acid sequence which results from the amino acid sequence SEQ ID No. 5 by addition, deletion or exchange of at least one amino acid, preferably from one to five amino acids.
- the plasmid vector preferably has a nucleotide sequence functioning as an “N-linker”, which contains the nucleotide sequence coding for a translocation sequence.
- the nucleotide sequence functioning as an “N-linker” comprises the nucleotide sequence according to SEQ ID No. 12.
- the plasmid vector according to the invention contains a nucleotide sequence which functions as a “C-linker”, in which the nucleotide sequence coding for the translocation sequence contains is.
- the nucleotide sequence functioning as a "C-linker” comprises the nucleotide sequence SEQ ID No. 13.
- the translocation sequence is preferably always fused to the N-terminus of a nucleotide sequence that is useful in gene therapy.
- sense - Full nucleotide sequences such as enzymes must retain the native N-terminus, either because they are only involved in the enzymatic activity in this unfused conformation or because they themselves carry specific transport signals, for example for import into the cell nucleus or into the mitochondia or for export to the extracellular matrix, in which case a cleavage of the leading peptide sequences after passage through the corresponding membrane is possible or even necessary.
- nucleotide sequences which are useful in gene therapy such as enzymes, have a functional C-terminus which is used to maintain d the catalytic properties must not be blocked.
- the N-linkers and C-linkers according to the invention described above were constructed as an optional component of the plasmid vector according to the invention.
- For encoding proteins with either N- or C-terminal protein transduction domains for cloning Domain for cloning appropriate nucleotide sequences which are useful in gene therapy into the Not I interface of the plasmid vector according to the invention.
- two versions of therapy plasmids are therefore preferably provided.
- pCURE2C on the other hand pCURE2N ( Figure 2).
- the term “gene therapy purpose” is understood to mean that the vector according to the invention, in particular plasmid vector, can be used for any gene therapy purposes, in particular for the introduction of foreign or endogenous nucleic acid sequences, in particular DNA sequences target cells.
- any cells of the human or animal body for example a mammalian body, can be understood as target cells. These can be embryonic, stem, body or germline cells of any stage of development.
- the invention therefore also relates to the use of the vector, in particular plasmid vector, both for somacell gene therapy and for germline gene therapy.
- the invention also covers the use of the vector, in particular plasmid vector, for purposes other than gene therapy, for example for research purposes or for genetic diagnostic purposes.
- operatively linked to one another is understood to mean that the linked elements are linked to one another in such a way that they can interact as intended, for example that operatively linked transcription elements ensure correct transcription.
- Operatively linked transcription and translation elements enable correct expression, that is to say in particular transcription and translation, to form a functional translation product.
- nucleotide sequences are understood, for example also genes, gene segments or other structural genome regions, the insertion of which into a target cell makes sense from a therapeutic point of view.
- the nucleotide sequences to be inserted, in particular genes, can be endogenous or Exogenous to the target cell These can be nucleotide sequences which serve to complement or correct gene defects in the body being treated, but can also be understood to mean one or more gene sections which serve to switch off target genes in target cells.
- Nucleotide sequences, in particular genes or gene segments, which are useful in gene therapy can also be antisense constructs which serve to inhibit transcription in the target cell and thus prevent or reduce the expression of certain proteins.
- Genes or gene segments suitable for insertion into the present plasmid vector can of course also be protein-coding or non-protein-coding regions.
- gene therapy will be under meaningful proteins understood gene products that are expressed in natural form, ie wild-type form, or modified form in target cells after insertion by means of genetic engineering methods.
- Proteins of this type which are useful in gene therapy can be any proteins which, for example, occur in defective form in the cell or are not expressed there at all and can be introduced into the cell by means of gene therapy, but can also be proteins which are not naturally present in the target cell occur, but are nevertheless therapeutically desirable there. Such proteins can also be designed as protein fragments or fusion proteins and optionally have modifications, for example post-translational modifications. Of particular interest are genes which code for proteins which are absent in the target cell, are present in reduced amounts or in mutant form. Such proteins can include, in particular, hormones, growth factors, enzymes, lymphokines, cytokines, receptors and the like. In particular, it can be factor VIII, tPA or the molybdenum cofactor.
- Molybdenum cofactor deficiency is a severe neurological disease that has not yet been treated and is ultimately fatal.
- the smallest amounts of intact cofactor and thus also of biosynthesis enzymes are sufficient for a clinically unremarkable phenotype.
- the main synthesis site is the liver, which is relatively easy to reach. Because of the procedure according to the invention, the enzymes formed here can be used using the set translocation signals are exported and also recorded by the brain.
- the present invention therefore also relates to methods for the treatment of molybdenum cofactor deficiency and molybdenum cofactor deficiency diseases, such as the sulfite oxidase deficiency or the xanthine oxidase deficiency.
- genes to be inserted are genes for hemoglobin, interleukin-1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, GM-CSF, G-CSF, M-CSF, human growth factor , Insulin, factor IX, LDL receptors, tumor necrosis factor, PDGF, EGF, NGF, IL-lra, EPO, TPO, beta-globin and biologically active muteins of these proteins.
- nucleotide sequences are also provided according to the invention in the plasmid vector according to the invention, which code therapeutically useful proteins for the treatment of cystic fibrosis (cystic fibrosis of the lungs).
- the present invention therefore also relates to a method for the treatment of cystic fibrosis.
- the plasmid vector according to the invention contains the constitutive expressing promoter, the human beta-actin promoter, which in particular does not include an intron.
- the human beta-actin promoter comprises the nucleotide sequence SEQ ID No. 10. Ent- speaking of this variant of the promoter region according to the invention, this simplest promoter structure without intron is referred to as plasmid vector pCURE2basic.
- the plasmid vector has an expression enhancer, in particular an enhancer, particularly preferably the CMV enhancer.
- the constitutively expressing promoter comprises in the 5 'to 3' direction a nucleotide sequence coding the CMV enhancer and the human beta-actin promoter.
- the nucleotide sequence encoding the CMV enhancer comprises the nucleotide sequence SEQ ID No. 9.
- the human beta-actin promoter comprises its native intron.
- the plasmid vector according to the invention thus provided is referred to as pCURE2natin.
- the human beta-actin promoter contained in the plasmid vector according to the invention comprises a shortened intron, the native 5 'and 3' splice sites and a shortened "stuffer ⁇ fragment.
- the shortened intron of the human beta-actin promoter additionally comprises a nucleotide sequence coding for the SV40 enhancer.
- the “stuffer” fragment is preferably shortened to such an extent that it only comprises the “branch site”.
- the “stuffer” fragment is shortened by 700 to 800 bp; the staged fer fragment shortened by 761 bp.
- the plasmid vectors according to the invention thus provided are referred to as pCURE2minin (containing the shortened intron) or pCURE2enhin (containing the shortened intron and the SV40 enhancer).
- BGHpA BGH polyadenylation signal
- the polyadenylation site is particularly preferably the BGH polyadenylation signal comprising the nucleotide sequence SEQ ID No. 6.
- a ribosome binding site (RBS) with a start codon is located in the 5 'to 3' direction after the constitutively expressing promoter and immediately before the nucleotide sequence encoding a translocation sequence.
- a multiple cloning site for the insertion of at least one regulatory element is preferably located in the plasmid vector according to the invention in the 5 'to 3' direction after the constitutively expressing promoter and before the nucleotide sequence coding for a translocation sequence.
- the at least one regulatory element is a tissue-specific promoter.
- the invention provides that the plasmid vector according to the invention contains at least one resistance gene, in particular a bacterial resistance gene.
- this bacterial resistance gene is the amp R gene for ampicilin resistance.
- the bacterial resistance gene is a kan R gene for kanaminicin resistance.
- the kan R gene preferably comprises the nucleotide sequence SEQ ID No. 7.
- the invention provides that the at least one resistance gene has at least one interface for linearizing and / or inactivating the resistance gene.
- the plasmid vector has at least one origin of replication for plasmid cultivation, particularly in bacteria.
- the origin of replication comprises the nucleotide sequence SEQ ID No. 8.
- the plasmid vector is preferably derived from the known vector pcDNA 3.1 (-) and is in particular 3.4 kbp in size (FIG. 1).
- the plasmid vector according to the invention is only 2.8 kbp in size and particularly preferably comprises the nucleotide sequence SEQ ID No. 11 (FIG. 2).
- the invention also relates to host cells or cells of a cell culture containing at least one plasmid vector of the present invention.
- a host cell can be, inter alia, a bacterial cell, a yeast cell, an animal cell, for example a mammalian or insect cell or a human cell.
- the invention also relates to methods for the genetic modification of a cell, for example an animal or human cell, comprising contacting the cell with a vector, in particular plasmid vector, according to the present invention under conditions which include an uptake of the vector, in particular plasmid vector allow the cell, especially the cell's genome.
- the invention therefore also relates to methods for producing genetically modified cells, the cells to be genetically modified being brought into contact with a vector, in particular a plasmid vector, of the present invention and being transiently or stably transformed.
- the invention also relates to the use of a vector, in particular plasmid vector, of the present invention for the production of a preparation, in particular a pharmaceutical preparation for gene therapy, in particular somatic gene therapy.
- the invention therefore also relates to preparations, in particular pharmaceutical preparations, containing at least one vector, in particular plasmid vector, of the present invention, optionally together with a pharmaceutically acceptable carrier. Further advantageous embodiments of the invention result from the subclaims.
- SEQ ID No. 1 the 33 nucleotides encoding the HIV-TAT lead peptide sequence (SEQ ID No. 2),
- SEQ ID No. 2 the 11 amino acids of the naturally occurring HIV-TAT lead peptide sequence
- SEQ ID No. 3 the nucleotide sequence containing 49 nucleotides of the region of pCU-RE comprising the RBS, the HIV-TAT region and the NoTl cloning site,
- SEQ ID No. 4 the amino acid sequence of the helix of the home domain from Antennipedia
- SEQ ID No. 5 the 11 amino acids of the modified, non-naturally occurring HIV-TAT lead peptide sequence
- SEQ ID No. 6 the nucleotide sequence of the BGH polyadenylation signal containing 235 nucleotides
- SEQ ID No. 7 the nucleotide sequence of the kanamicin resistance gene kan R containing 1189 nucleotides
- SEQ ID No. 8 the nucleotide sequence of the origin of replication containing 661 nucleotides
- SEQ ID No. 9 the nucleotide sequence of the CMV enhancer containing 348 nucleotides
- SEQ ID No. 10 the nucleotide sequence of the beta-actin promoter containing 377 nucleotides
- SEQ ID No. 11 the nucleotide sequence of the plasmid vector pCURE2basic according to the invention containing 2810 nucleotides (without a cloned nucleotide sequence which makes sense in terms of gene therapy),
- SEQ ID No. 12 shows the nucleotide sequence containing 40 nucleotides of the “N-linker” encoding the modified HIV-TAT leading peptide sequence (SEQ ID No. 5), consisting of synthetic oligonucleotides 2NF and 2NR and
- SEQ ID No. 13 contains the nucleotide sequence containing the 37 nucleotides of the “C-linker” encoding the modified HIV-TAT lead peptide sequence (SEQ ID No. 5), consisting of synthetic oligonucleotides 2CF and 2CR.
- FIG. 1 shows a graphic representation of the plasmid pCURE
- FIG. 2 shows a graphic representation of the plasmid pCURE2basic
- FIG. 3 shows an in situ coloring of a brain half transformed according to the invention and a control
- FIG. 4 thin sections of the liver and brain (each negative control and transformed according to the invention).
- FIG. 5 shows thin sections of a brain transformed according to the invention after intrahepatic injection of pCURE2Cbasic-lacZ (FIG. 5A) and thin section of the brain of an untreated control animal (FIG. 5B),
- FIG. 6 shows thin sections of a lung with bronchial epithelium transformed according to the invention after intrahepatic injection of pCURE2Cbasic-lacZ (FIG. 6A) and thin section of the lung of an untreated control animal (FIG. 6B).
- the expression vector pcDNA 3.1 (-) from Invitrogen (cat. No. V 795-20) was cleaved with EcoRV and Nael. The plasmid was then religated and the nucleotide sequence according to SEQ ID No. 3 was inserted into the NotI site.
- FIG. 1 graphically represents the plasmid pCURE in PVU I linearized form (from left to right in 5 'to 3' orientation).
- the abbreviations used in FIG. 1 mean: P CMV CMV promoter for cell type-independent expression (source: pcDNA3.1 (-))
- MCS multiple cloning site for tissue-specific promoters NhelU, Pmel, Drall, Apal, Xbal, Xhol
- TAT TAT leader sequence as translocation signal for intercellular transport
- Notl insertion site for, for example, therapeutically useful cDNA
- pMBl origin of replication (pUC-derived) for plasmid cultivation in bacteria
- pCUREl has a size of 3.4 kbp without inserted DNA.
- FIG. 1 shows that a multiple cloning site MCS is arranged between P CM, ie the CMV promoter, and the ribosomal binding site. In the 3 'direction of which follow a TAT leader sequence, a Notl insertion site and the SV40pA polyadenylation site.
- pCURE-lacZ was constructed by cloning the lacZ gene from E. coli into the NotI site of pCURE ( Figure 1).
- the resulting plasmid pCURE-lacZ contains amino acids 8 to 1023 of E. coli beta-galactosidase, which convert Xgal to a blue dye.
- This catalytic domain lies in the reading frame behind the HIV-TAT translocation leader sequence, which enables intercellular transport.
- pCURE-lacZ was isolated on a mg scale, sterile and pyrogen-free from the E.coli strain JM109 (Qiagen endomaxiprep kit) and after concentration determination adjusted to 150 mM phosphate buffer, pH 7.0 (this buffer also serves as an injection solution for the Control mice).
- mice were injected with 50 ⁇ g pCURE-lacZ in 50 ⁇ l phosphate buffer directly into the liver. After 96 hours, the animals were sacrificed and various organs were removed. Brain, liver, heart and lungs were frozen in liquid nitrogen and stored at -70 ° C until further analysis. The above-mentioned organs were incubated in Xgal staining solution (Stratagene Xgal in si tu detection kit) at 37 ° C overnight and used after embedding in paraffin for thin sections of 10-40 ⁇ m.
- Xgal staining solution Stratagene Xgal in si tu detection kit
- FIG. 3 shows brain halves stained in total after Xgal incubation. Left: injection of 50 ⁇ g pCURE-lacZ. Right: injection of 50 ⁇ l phosphate buffer (negative control).
- FIG. 4 shows paraffin-fixed thin sections of the corresponding organs, a) and b) liver tissue: a) negative control b) injection of pCURE-lacZ. c) and d) brain: c) negative control d) injection of pCURE-lacZ.
- vectors according to the invention were successfully transferred into the tissue, expressed there and the gene products were also transported into non-transfected organs, in particular the brain.
- Example 4 The plasmids pCURE2basic, pCURE2nativ, pCURE2minin and pCURE2enhin
- the CMV promoter present on the therapy plasmid pCURE according to Example 1 is replaced by various variants of the human beta-actin promoter. Both promoters are expressed ubiquitously, i.e. in all organs.
- the human beta actin promoter is first used using genomic clones and PCR technologies for use in the therapy plasmids.
- the human beta-actin gene is ubiquitously expressed for life, thus bypassing promoter inactivation.
- the human beta-actin promoter is used according to the invention in a total of four different variants of the promoter area:
- CMV enhancer + beta-actin promoter + beta-actin intron in which the internal intron sequence is replaced by the SV40 enhancer element + BGHpA (enhancer intron)
- the "pure" promoter area contains the so-called "CAT” and “TATA” boxes for transcription initiation and represents the smallest of the four possibilities.
- this version contains, in addition to the promoter, an intron in front of the start codon or the coding sequence.
- the intron consists of a 5 'and 3' splice point and an internal “step fer “fragment, which only provides a certain distance between the two splice sites. Since the intron does not contain a coding sequence, it can only have regulatory properties at the level of transcription.
- the mini-intron contains the native 5 'and 3' splice points, but the "stuffer” is greatly shortened in order to keep the size of the total plasmid small.
- the "stuffer” is shortened so that the so-called " branch site "is still included.
- the" stuffer "of the mini-intron is shortened by 761 bp.
- the enhancer intron corresponds to the mini intron plus the SV40 enhancer area, which in turn serves as a “stuffer” and thus takes into account a requirement for the distance between the two splice points.
- the SV40 enhancer area which in turn serves as a “stuffer” and thus takes into account a requirement for the distance between the two splice points.
- it fulfills the passive native “ stuffer "an expression enhancement function. After the transcription, this previously useful area (core import and spacer) is no longer needed and, like the native intron, is spliced out.
- the promoter area consisting of the CMV enhancer (native sequence from the cytomegalovirus, GenBank M60321), different parts of the human beta actin promoter (native sequence from the human genome, Genbank AC006483), in one of the variants described above from the SV40 enhancer element (na- tive sequence from Simian Virus 40, GenBank NC001669), together with the BGH polyadenylation site (native sequence from the bovine genome, GenBank J00008) forms the expression cassette of the therapy plasmid.
- This also consists of an origin of replication (ori) for plasmid propagation in bacteria, in particular the native sequence from pUC9 (identical to pUCl3 GenBank L09130) and in particular a kanamycin resistance (native from pACYC177, GenBank X06402) for antibiotic selection in bacteria.
- origin of replication for plasmid propagation in bacteria, in particular the native sequence from pUC9 (identical to pUCl3 GenBank L09130) and in particular a kanamycin resistance (native from pACYC177, GenBank X06402) for antibiotic selection in bacteria.
- the kanamycin resistance has the further advantage over the ampicillin resistance used in pCURE (example 1) that its use is also approved for clinical trials from phase III. All of the sequence elements of pCURE2 were made individually. A precursor plasmid such as pcDNA3.1 was therefore not used as in pCURE.
- pCURE2basic contains the simplest promoter structure a (no intron).
- pCURE2natin includes Version b (native intron).
- pCURE2minin includes version c (mini-intron).
- pCURE2enhin contains version d (enhancer intron).
- the four variants of pCURE2 described above are each constructed optionally for the coding of proteins with N- as well as with C-terminal protein transduction domains after the corresponding coding sequences have been cloned into the unique Notl interface. This results in a total of 8 options and therapy plasmids:
- the basal therapy plasmid pCURE2basic with a total of 8 variants is shown in FIG. 2.
- kan R The sequence for kanamycin resistance (kan R ) is amplified from pACYC177 PCR.
- the origin of replication (ori) is amplified from pUC9 by means of PCR.
- the CMV enhancer sequence which was amplified from pCURE (example 1) by means of PCR, is incorporated into this, the PCR primers being selected according to the invention such that the emergency (downstream) only in the 3 ⁇ direction from the enhancer (downstream) Interface is restored and thus remains unique.
- the BGHpA is amplified from genomic bovine DNA PCR and installed after the enhancer in the unique Notl interface, the PCR primers having been selected according to the invention such that only the Notl interface before the BGHpA (upstream) is restored.
- various areas of the human beta-actin promoter or the SV40 enhancer region are installed between the enhancer and the polyadenylation site. This installation is carried out according to the principle set forth above, wherein interfaces are so incorporated into the PCR primers that only the 3 ⁇ -NotI interface (downstream) restorers is riert and thus the plasmid can be linearized again with Notl for the next ligation.
- the N- or C-linkers according to the invention are installed, each of which has been completely synthesized.
- the N-linker according to the invention provides the fusion protein with a N-terminal Proteintranslokationsdomäne (PTD), the 3 ⁇ -NotI interface is preserved for installation of further sequences.
- the C-linker provides the fusion protein with a C-terminal PTD, the 5 -NotI interface being retained.
- the lacZ cassette was isolated for pCURE2Nbasic-lacZ from pCURE-lacZ (Example 2) with restriction enzymes or for PCR for pCURE2Nbasic-lacZ from pCURE-lacZ (Example 2).
- mice Two-day-old mice (wild type) were injected intrahepatically with 50 ⁇ g of the isolated plasmid vector according to the invention containing the lacZ gene in 50 ⁇ l of a 150 mM phosphate buffer with pH 7.0. After 7 days, the animals were sacrificed, the organs removed and, after Xgal staining, paraffin sections of the lungs and brain were made. At the same time, non-injected control animals of the same age were also paraffin sections from Brain and lungs made. The Xgal staining was carried out according to Example 3. All enlargements of the paraffin sections are a hundred times and without counterstaining.
- FIGS. 5A and 5B show completely colored brain halves after Xgal incubation.
- FIG. 5A After injection of 50 ⁇ g of the plasmid vector.
- Figure 5B after injection of 50 ul phosphate buffer (negative control).
- the brain sections show on the right the heavily stained choroid plexus and on the left the stained neurons of the cerebral cortex. It can be clearly seen that in the animals treated with the plasmid vector according to the invention, the neurons are colored blue; there the lacZ gene was transformed and expressed according to the invention.
- the plasmid vector according to the invention is suitable for the somatic gene therapy of brain neurons.
- the blood-brain barrier is - particularly surprisingly - overcome by the fusion proteins according to the invention.
- Figures 6A and 6B show the results for the lungs: In the lung sections, a bronchus with a strongly stained epithelium can be seen centrally. Due to the lack of staining in the negative control, this structure is difficult to see there. The specific staining of the bronchial pithels shows that the lacZ gene transformed into the bronchial epithelium with the plasmid vector according to the invention is expressed.
- the specific staining of the bronchial epithelium makes the use of the plasmid vector according to the invention particularly suitable for treating the cystic fibrosis of the lungs (cystic fibrosis).
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Abstract
Description
Vektor und dessen Verwendung in gentherapeutischen Verfahren Vector and its use in gene therapy processes
Beschreibungdescription
Die vorliegende Erfindung betrifft einen Vektor, insbesondere einen Plasmidvektor für gentherapeutische Zwecke, insbesondere für die somatische Gentherapie, pharmazeutische Zusammensetzungen enthaltend diesen Plasmidvektor sowie Verwendungen und Verfahren unter Einsatz dieses Plasmidvektors .The present invention relates to a vector, in particular a plasmid vector for gene therapy purposes, in particular for somatic gene therapy, pharmaceutical compositions containing this plasmid vector and uses and methods using this plasmid vector.
Gentherapeutische Verfahren sind Verfahren zur Korrektur von erblich bedingten Erkrankungen unter Einsatz gentechnologischer Methodik durch Ersetzen eines oder mehrerer defekter Gene, durch zusätzliches Einbringen des normalen Gens oder durch Ein- bringen eines Gens, das die Wirkung des defekten Genes kompensiert. Gentherapeutische Verfahrensweisen befinden sich gegenwärtig noch im Experimental- stadium am Tier. Es wird zwischen der Keimbahn- Gentherapie und der somatischen Gentherapie unter- schieden. Im Zuge der Keimbahn-Gentherapie wird der genetische Defekt im frühen Embryonalstadium behoben, so dass auch die Keimzellen des Individuums betroffen werden und die veränderte genetische Information an die Nachkommen weitergegeben wird. Die somatische Gentherapie behebt genetische Defekte dagegen allein in den Körperzellen entwickelter Organismen zum Beispiel durch Übertragen eines Normalfunktion aufweisenden Genes. Das an die Nachkommen weitergegebene Erbgut enthält daher nach wie vor den genetischen Defekt. Üblicherweise werden im Rahmen der somatischen Gentherapie zunächst zu behandelnde Körperzellen dem Körper entnommen, an- schließend die gewünschten genetischen Veränderungen in den Zellen in vitro durchgeführt, und zwar in der Regel durch Transformation der Zielzellen mit dem gentherapeutisch eingesetzten Gen transfor- mierte Zellen selektioniert und anschließend in den Patienten reimplantiert.Gene therapy methods are methods for correcting hereditary diseases using genetic engineering methodology by replacing one or more defective genes, by additionally introducing the normal gene or by introducing a gene which compensates for the effect of the defective gene. Gene therapy methods are currently still in the experimental stage on animals. A distinction is made between germline gene therapy and somatic gene therapy. In the course of germline gene therapy, the genetic defect in the early embryonic stage is remedied, so that the germ cells of the individual are also affected and the changed genetic information is passed on to the offspring. Somatic gene therapy, on the other hand, eliminates genetic defects solely in organisms developed in the body cells, for example by transmitting a gene that has normal function. The genetic material passed on to the offspring therefore still contains the genetic defect. Usually, in the context of somatic gene therapy, the body cells to be treated are first removed from the body, finally, the desired genetic changes in the cells are carried out in vitro, and as a rule selected cells transformed by transforming the target cells with the gene used for gene therapy and then reimplanted in the patient.
Voraussetzung für jede erfolgreiche Gentherapie ist die Kenntnis der molekularen Ursachen des zu behandelnden Defektes. Voraussetzung ist auch die Be- reitstellung einer möglichst hohen Anzahl mit dem erwünschten Gen transformierter Zellen. Die Transformation, das heißt das Einschleusen genetischen Materials in die Zellen geschieht üblicherweise mittels chemisch-physikalischer Methoden, zum Bei- spiel Mikroinjektion von DNA, oder durch Verwendung von Vektoren, zum Beispiel Retroviren, Adenoviren, Herpes simplex-Viren, DNA-aufweisenden Liposomen oder Plasmidvektoren.Knowledge of the molecular causes of the defect to be treated is a prerequisite for any successful gene therapy. A prerequisite is also the provision of the largest possible number of cells transformed with the desired gene. The transformation, that is to say the introduction of genetic material into the cells, usually takes place by means of chemical-physical methods, for example microinjection of DNA, or by using vectors, for example retroviruses, adenoviruses, herpes simplex viruses, DNA-containing liposomes or plasmid vectors.
So sind zum Beispiel aus der WO 99/66061, der WO 99/04026, der WO 96/37623 oder der WO 96/14332 vi- rale Vektoren bekannt, die für den Einsatz in gentherapeutischen Verfahren vorgeschlagen werden und in der Lage sind, genetisches Material in Zielzellen einzuführen.For example, from WO 99/66061, WO 99/04026, WO 96/37623 or WO 96/14332, viral vectors are known which are proposed for use in gene therapy processes and are capable of generating genetics Introduce material into target cells.
Aus der WO 99/59546 sind polymere Genträger bekannt, die Nucleinsäuren in Zellen einführen können. Die WO 98/40502 beschreibt Peptid- oder Protein-haltige Zusammensetzungen, die neben einem Transfektionsagens auch Nucleinsäuren enthalten und für gentherapeutische Verfahren verwendet werden können. Die US 5,804,604 und US 5,674,980 beschreiben die Verwendung eines Plasmides für therapeutische Zwecke. Dieses Plasmid codiert ein Fusionsprotein, umfassend einen basischen Bereich des HIV-TAT- Transportproteins (HIV : humaner Immundefizienzvi- rus) und den Papillo avirus E2-Repressor . Das aus dem TAT-Transportproteinteil und dem E2- Repressorprotein gebildete Fusionsprotein dient gleichsam als Transportvehikel für das Einschleusen interessierender Peptide, Makromoleküle oder kleinerer Moleküle wie Nucleinsäuren oder Polysacchari- de in Zielzellen.Polymeric gene carriers are known from WO 99/59546 which can introduce nucleic acids into cells. WO 98/40502 describes peptide- or protein-containing compositions which, in addition to a transfection agent, also contain nucleic acids and can be used for gene therapy processes. US 5,804,604 and US 5,674,980 describe the use of a plasmid for therapeutic purposes. This plasmid encodes a fusion protein, comprising a basic region of the HIV-TAT transport protein (HIV: human immunodeficiency virus) and the Papillo avirus E2 repressor. The fusion protein formed from the TAT transport protein part and the E2 repressor protein serves as a transport vehicle for the introduction of peptides, macromolecules or smaller molecules such as nucleic acids or polysaccharides into target cells.
Die WO 87/02989 beschreibt das HIV TAT-3 Protein sowie Plasmide, die dieses Protein codierende Nuc- leinsäuresequenzen aufweisen. Es wird offenbart, dass das rekombinante TAT-3 Protein für die Diagnose und Therapie von HIV-Infektionen dienen kann.WO 87/02989 describes the HIV TAT-3 protein and plasmids which have nucleic acid sequences coding for this protein. It is disclosed that the recombinant TAT-3 protein can be used for the diagnosis and therapy of HIV infections.
Schließlich offenbart Schwarze et al. (ScienceFinally, Schwarze et al. (Science
(1999) 285, 1569-1572 die intraperitoneale Injekti- on eines das HIV-TAT-Protein umfassenden Fusionsproteins in Mauszellen.(1999) 285, 1569-1572 the intraperitoneal injection of a fusion protein comprising the HIV-TAT protein into mouse cells.
Die beschriebenen im Rahmen der Gentherapie eingesetzten Transformationsverfahren weisen den Nachteil vergleichsweise geringer Effizienz auf. Die für einen gentherapeutisch erfolgversprechenden Ansatz notwendige Zahl transformierter Zellen lässt sich kaum oder gar nicht erreichen. Die beschriebenen Verfahren weisen zudem häufig auch den Nachteil auf, dass die Expressionsrate in den transformier- ten Zellen nicht hoch genug ist, um einen therapeutischen Effekt erwarten zu lassen. Als besonders nachteilig erweist sich, dass manche Gewebe oder Organe wie das Gehirn für Stoffwechselprodukte nur schwer zu erreichen und aufgrund der Blut/Hirn-Schranke auch nicht von anderen Organen mit Proteinen versorgt werden können. Gerade in solchen Geweben oder Organen ist eine somatische Gentherapie besonders problematisch.The transformation processes described in the context of gene therapy have the disadvantage of comparatively low efficiency. The number of transformed cells necessary for a gene therapy promising approach is difficult or impossible to achieve. The described methods also frequently have the disadvantage that the expression rate in the transformed cells is not high enough to be expected to have a therapeutic effect. It has proven to be particularly disadvantageous that some tissues or organs such as the brain are difficult to reach for metabolic products and, because of the blood / brain barrier, cannot be supplied with proteins by other organs. Somatic gene therapy is particularly problematic in such tissues or organs.
Der vorliegenden Erfindung liegt daher das technische Problem zugrunde, Mittel und Verfahren bereit- zustellen, die die für ein erfolgreiches gentherapeutisches Verfahren notwendige hohe Transformations- und Expressionsrate interessierender Gene gewährleisten.The present invention is therefore based on the technical problem of providing means and methods which ensure the high transformation and expression rate of genes of interest which is necessary for a successful gene therapeutic method.
Die vorliegende Erfindung löst das ihr zu Grunde liegende technische Problem durch die Bereitstellung eines Vektors für gentherapeutische Zwecke, umfassend mindestens eine eine Translokationsse- quenz codierende Nucleotidsequenz ausgewählt aus der Gruppe bestehend aus einer Nucleotidsequenz co- dierend für das HSV VP22-Protein (HSV-VP22: Elliott und O'Hare Cell (1997) 88, 223-233), einer Nucleotidsequenz codierend die HIV-TAT-Proteintrans- duktionsdomäne und einer Nucleotidsequenz codierend das Antennipedia-Peptid (Antennipedia: Derozzi et al., J. Biol. Chem. (1994) 269, 10444-10450, Helix der Ho eodomäne: RQIKIWFGNRRMKWKK) , SEQ ID Nr. 4).The present invention solves the technical problem on which it is based by providing a vector for gene therapy purposes, comprising at least one nucleotide sequence coding for a translocation sequence selected from the group consisting of a nucleotide sequence coding for the HSV VP22 protein (HSV-VP22) : Elliott and O'Hare Cell (1997) 88, 223-233), a nucleotide sequence encoding the HIV-TAT protein transduction domain and a nucleotide sequence encoding the Antennipedia peptide (Antennipedia: Derozzi et al., J. Biol. Chem. (1994) 269, 10444-10450, Helix der Ho eodomäne: RQIKIWFGNRRMKWKK), SEQ ID No. 4).
Insbesondere ist ein derartiger Vektor als Plasmidvektor, viraler Vektor oder Liposom ausgeführt.In particular, such a vector is designed as a plasmid vector, viral vector or liposome.
Die vorliegende Erfindung löst das ihr zu Grunde liegende technische Problem insbesondere durch ei- nen Plasmidvektor, umfassend operativ miteinander verknüpft in 5'- zu 3' -Richtung mindestens einen konstitutiv expri ierenden Promotor, die mindestens eine Translokationssequenz codierende Nucleotidse- quenz, eine Notl-Clonierungsstelle für die Inserti- on mindestens einer gentherapeutisch sinnvollen Nucleotidsequenz und eine Polyadenylierungsstelle . Erfindungsgemäß bevorzugt wird ein Plasmidvektor für gentherapeutische Zwecke bereitgestellt, wobei die Translokationssequenz die 11 Aminosäuren YGRKKRRQRRR (SEQ ID Nr. 2) des natürlich vorkommenden HIV-TAT-Leitpeptids umfasst. In einer Variante umfasst die Translokationssequenz die 11 Aminosäuren YARAAARQARA (SEQ ID Nr. 5) eines durch gezielte Aminosäureaustausche modifizierten HIV-TAT- Leitpeptids .The present invention solves the underlying technical problem in particular by A plasmid vector comprising operatively linked to one another in the 5 'to 3' direction at least one constitutively expressing promoter, the nucleotide sequence coding for at least one translocation sequence, a NotI cloning site for the insertion of at least one nucleotide sequence which is useful in gene therapy and a polyadenylation site. According to the invention, a plasmid vector is preferably provided for gene therapy purposes, the translocation sequence comprising the 11 amino acids YGRKKRRQRRR (SEQ ID No. 2) of the naturally occurring HIV-TAT lead peptide. In one variant, the translocation sequence comprises the 11 amino acids YARAAARQARA (SEQ ID No. 5) of an HIV-TAT lead peptide modified by targeted amino acid exchanges.
Erfindungsgemäß bevorzugt wird ein Plasmidvektor für gentherapeutische Zwecke bereitgestellt, der als pCURE bezeichnet wird (Figur 1) , umfassend in operativer Verknüpfung und in 5'- zu 3'- Orientierung mindestens einen konstitutiv exprimierenden Promotor, mindestens eine eine Ribosomenbin- destelle (RBS) codierende Nucleotidsequenz, mindestens eine die HIV-TAT-Leitpeptid codierende Nucleo- tidsequenz, insbesondere codierend die 11 Aminosäuren YGRKKRRQRRR (SEQ ID Nr. 2), eine Notl- Clonierungsstelle für die Insertion einer gentherapeutisch sinnvollen Nucleotidsequenz, insbesondere eines gentherapeutisch sinnvollen Genes, und eine Polyadenylierungsstelle.According to the invention, a plasmid vector for gene therapy purposes is preferably provided, which is referred to as pCURE (FIG. 1), comprising in operative linkage and in 5 'to 3' orientation at least one constitutively expressing promoter, at least one coding for a ribosome binding site (RBS) Nucleotide sequence, at least one nucleotide sequence encoding the HIV-TAT lead peptide, in particular encoding the 11 amino acids YGRKKRRQRRR (SEQ ID No. 2), an NotI cloning site for the insertion of a nucleotide sequence which is useful for gene therapy, in particular a gene therapy-meaningful gene site, and a polyaden ,
Die erfindungsgemäßen Plasmidvektoren zeichnen sich durch eine eine Translokationssequenz, insbesondere eine HIV-TAT-Leitpeptidsequenz codierende Nucleotidsequenz aus, die unmittelbar und übergangslos im Leseraster an einer zum Beispiel ein therapeutisch sinnvolles Protein oder Proteinfragment codierenden Nucleotidsequenz angeknüpft ist, so dass im Verlauf der Transkription und Translation insbesondere ein die HIV-TAT Leitpeptidsequenz oder eine modifizierte HIV-TAT-Leitpeptidsequenz aufweisendes Fusionsprotein in der Zielzelle, das heißt der zu trans- formierenden beziehungsweise transformierten Zelle gebildet wird. Der erfindungsgemäß bevorzugt vorgesehene Einsatz einer Translokations-Leader-Sequenz (Leitpeptidsequenz oder Translokationssignal) von 11 Aminosäuren, also der Proteintransduktionsdomäne des HIV-TAT-Proteins, ermöglicht dem in einer Zielzelle gebildeten Fusionsprotein überraschenderweise den Export aus der transformierten Zelle und den Import in mindestens eine weitere Zelle, insbesondere auch das Überwinden der Blut-Hirn-Schranke. Es zeigte sich überraschend, dass die Translokation- seigenschaft einer modifizerten HIV-TAT- Proteintransduktionsdomäne, insbesondere mit einer Aminosäuresequenz gemäß SEQ ID Nr. 5, als Leitpep- tid gegenüber der natürlich vorkommenden Prote- intransduktionsdomäne des HIV-TAT-Proteins sogar noch weiter verbessert ist.The plasmid vectors according to the invention are characterized by a translocation sequence, in particular a nucleotide sequence coding for HIV-TAT leader peptide sequence, which is linked directly and seamlessly in reading frame to a nucleotide sequence coding for example a therapeutically meaningful protein or protein fragment, so that in the course of the transcription and translation in particular a HIV-TAT leader peptide sequence or a modified HIV Fusion protein having a TAT lead peptide sequence is formed in the target cell, that is to say the cell to be transformed or transformed. The use of a translocation leader sequence (leader peptide sequence or translocation signal) of 11 amino acids, i.e. the protein transduction domain of the HIV-TAT protein, which is preferably provided according to the invention, surprisingly enables the fusion protein formed in a target cell to be exported from the transformed cell and imported into at least one another cell, especially crossing the blood-brain barrier. It was surprisingly found that the translocation property of a modified HIV-TAT protein transduction domain, in particular with an amino acid sequence as shown in SEQ ID No. 5, as a leading peptide improves even further compared to the naturally occurring protein-transduction domain of the HIV-TAT protein is.
Das vom erfindungsgemäßen Vektor codierte Fusionsprotein eignet sich also zum interzellulären Transport. Der Einsatz des erfindungsgemäßen Plasmidvek- tors führt erfindungsgemäß auch zu einer erhöhten Anzahl von transformierten Zellen mit intaktem Protein je mit DNA transformierter Zelle. Der erfindungsgemäße Plasmidvektor trägt darüber hinaus bevorzugt eine mit der Leitsequenz verknüpfte Translations-Initationssequenz, nämlich eine die RBS-Sequenz (Ribosomenbindestelle, "Kozak-Sequenz") codierende Nucleotidsequenz und insbesondere alle weiteren für die Transkription erforderlichen Elemente, wie einen konstitutiv exprimierenden Promotor, zum Beispiel der CMV-Promotor oder der humane beta-Aktin-Promotor für die ubiquitäre Expression, eine Polyadenylierungsstelle, vorzugsweise die Polyadenylierungsstelle von SV40 (=SV40pA) sowie mindestens ein Terminationssignal.The fusion protein encoded by the vector according to the invention is therefore suitable for intercellular transport. The use of the plasmid vector according to the invention also leads to an increased number of transformed cells with intact protein, each with DNA-transformed cell, according to the invention. The plasmid vector according to the invention preferably also carries a translation initiation sequence linked to the leader sequence, namely a nucleotide sequence coding the RBS sequence (ribosome binding site, "Kozak sequence") and in particular all other elements required for transcription, such as a constitutively expressing promoter Example of the CMV promoter or the human beta-actin promoter for ubiquitous expression, a polyadenylation site, preferably the polyadenylation site of SV40 (= SV40pA) and at least one termination signal.
Der erfindungsgemäße Plasmidvektor ist in einer besonders bevorzugten Ausführungsform, gemäß welcher der Vektor ohne inserierte Fremd-DNA eine Größe von lediglich 2,8 kbp (Figur 2) bis 3,4 kbp (Figur 1) aufweist, extrem klein und kann daher auch große und/oder mehrere gentherapeutisch sinnvolle Gene oder Genabschnitte aufnehmen. Die Insertion der gentherapeutisch sinnvollen Gene oder Genabschnitte erfolgt durch die erfindungsgemäß bevorzugte vorteilhafterweise nur einmal im Vektor vorkommende, das heißt „unique" Notl-Schnittstelle, die unmittelbar hinter der das Leitpeptid codierenden Nucle- otidsequenz liegt beziehungsweise mit dieser überlappt .In a particularly preferred embodiment, according to which the vector without inserted foreign DNA has a size of only 2.8 kbp (FIG. 2) to 3.4 kbp (FIG. 1), the plasmid vector according to the invention is extremely small and can therefore also be large and / or record several genes or gene segments that are useful in gene therapy. The insertion of the genes or gene segments which are meaningful in gene therapy is carried out by means of the inventively preferred, that is to say only once in the vector, that is to say “unique” NotI interface, which lies immediately behind the nucleotide sequence coding for the leading peptide or overlaps with it.
Erfindungsgemäß ist in einer bevorzugten Ausführungsform vorgesehen, dass das Plasmid mit ent- wicklungs- oder gewebespezifischen oder regulierba- ren regulatorischen Elementen, zum Beispiel Promotoren oder Enhancern versehen wird, die mittels ei- ner multiplen Clonierungsstelle in den Vektor eingefügt werden.According to the invention, a preferred embodiment provides that the plasmid is provided with developmental or tissue-specific or regulatable regulatory elements, for example promoters or enhancers, which are a multiple cloning site are inserted into the vector.
Erfindungsgemäß ist in einer besonders bevorzugten Ausführungsform vorgesehen, eine multiple Clonie- rungsstelle für die Insertion mindestens eines regulatorischen Elementes im erfindungsgemäßen Plasmidvektor vorzusehen, insbesondere diese - in 5'- zu 3' -Richtung - zwischen einem konstitutiv expri- mierenden Promotor und einer Ribosomenbindungsstel- le einzufügen. In einer bevorzugten Variante ist der konstitutiv exprimierende der CMV-Promotor.According to the invention, in a particularly preferred embodiment, it is provided to provide a multiple cloning site for the insertion of at least one regulatory element in the plasmid vector according to the invention, in particular this - in the 5 'to 3' direction - between a constitutively expressing promoter and a ribosome binding site insert le. In a preferred variant, the constitutively expressing is the CMV promoter.
In einer besonders bevorzugten Ausführungsform des erfindungsgemäßen Plasmidvektors umfasst die Translokationssequenz eine modifizierte Aminosäurese- quenz, die aus der Aminosäuresequenz SEQ ID Nr. 2 durch Addition, Deletion oder Austausch von mindestens einer Aminosäure, bevorzugt von β Aminosäuren hervorgeht. Insbesondere werden dabei die Aminosäuren Glycin, Lysin und/oder Arginin durch die Amino- säure Alanin ersetzt.In a particularly preferred embodiment of the plasmid vector according to the invention, the translocation sequence comprises a modified amino acid sequence which results from the amino acid sequence SEQ ID No. 2 by addition, deletion or exchange of at least one amino acid, preferably β amino acids. In particular, the amino acids glycine, lysine and / or arginine are replaced by the amino acid alanine.
Erfindungsgemäß bevorzugt ist der Plasmidvektor, worin die Translokationssequenz eine modifizierte Aminosäuresequenz umfasst, die aus der Aminosäuresequenz SEQ ID Nr. 5 durch Addition, Deletion oder Austausch von mindestens einer Aminosäure, bevorzugt von einer bis fünf Aminosäuren hervorgeht.According to the invention, the plasmid vector is preferred, wherein the translocation sequence comprises a modified amino acid sequence which results from the amino acid sequence SEQ ID No. 5 by addition, deletion or exchange of at least one amino acid, preferably from one to five amino acids.
Erfindungsgemäß bevorzugt besitzt der Plasmidvektor eine als „N-linker" fungierende Nucleotidsequenz, worin die eine Translokationssequenz codierende Nucleotidsequenz enthalten ist. In einer Variante dieser bevorzugten Ausführungsform umfasst die als „N-linker" fungierende Nucleotidsequenz die Nucleotidsequenz gemäß SEQ ID Nr. 12. In einer alternativen bevorzugten Ausführungsform enthält der erfin- dungsgemäße Plasmidvektor eine als „C-linker" fungierende Nucleotidsequenz, worin die die Translokationssequenz codierende Nucleotidsequenz enthalten ist. In einer bevorzugten Variante dieser Ausführungsform umfasst die als „C-linker" fungierende Nucleotidsequenz die Nucleotidsequenz SEQ ID Nr. 13. Bevorzugt wird die Translokationssequenz stets mit dem N-Terminus einer gentherapeutisch sinnvollen Nucleotidsequenz fusioniert. Es ist jedoch denkbar, dass bei bestimmten gentherapeutisch sinn- vollen Nucleotidsequenzen wie Enzyme der native N- Terminus erhalten bleiben muss, da er entweder nur in dieser nicht-fusionierten Konformation an der enzymatischen Aktivität beteiligt ist oder weil er seinerseits spezifische Transportsignale trägt, zum Beispiel für den Import in den Zellkern oder in die Mitochondien oder für den Export in die extrazelluläre Matrix, wobei zusätzlich eine Abspaltung der Leitpeptidsequenzen nach Durchtritt durch die entsprechende Membran möglich oder sogar nötig ist. Andererseits besitzen einige gentherapeutisch sinnvolle Nucleotidsequenzen wie Enzyme einen funktioneilen C-Terminus, der zur Aufrechterhaltung der katalytischen Eigenschaften nicht blockiert werden darf. Um diesen beiden Möglichkeiten Rechnung zu tragen, wurden die oben beschriebenen erfindungsgemäßen N-linker und C-lin- ker als wahlweiser Bestandteil des erfindungsgemäßen Plasmidvektors konstruiert. Für die Codierung von Proteinen mit entweder N- oder C-terminaler Proteintransduktionsdomäne zur Einclonierung domäne zur Einclonierung entsprechender gentherapeutisch sinnvoller Nucleotidsequenzen in die Not I-Schnittstelle des erfindungsgemäßen Plasmidvektors. Erfindungsgemäß bevorzugt werden daher zwei Versionen von Therapieplasmiden bereitgestellt. Zum einen pCURE2C, zum anderen pCURE2N (Figur 2) .According to the invention, the plasmid vector preferably has a nucleotide sequence functioning as an “N-linker”, which contains the nucleotide sequence coding for a translocation sequence. In one variant In this preferred embodiment, the nucleotide sequence functioning as an “N-linker” comprises the nucleotide sequence according to SEQ ID No. 12. In an alternative preferred embodiment, the plasmid vector according to the invention contains a nucleotide sequence which functions as a “C-linker”, in which the nucleotide sequence coding for the translocation sequence contains is. In a preferred variant of this embodiment, the nucleotide sequence functioning as a "C-linker" comprises the nucleotide sequence SEQ ID No. 13. The translocation sequence is preferably always fused to the N-terminus of a nucleotide sequence that is useful in gene therapy. However, it is conceivable that certain gene therapy makes sense - Full nucleotide sequences such as enzymes must retain the native N-terminus, either because they are only involved in the enzymatic activity in this unfused conformation or because they themselves carry specific transport signals, for example for import into the cell nucleus or into the mitochondia or for export to the extracellular matrix, in which case a cleavage of the leading peptide sequences after passage through the corresponding membrane is possible or even necessary. On the other hand, some nucleotide sequences which are useful in gene therapy, such as enzymes, have a functional C-terminus which is used to maintain d the catalytic properties must not be blocked. In order to take these two possibilities into account, the N-linkers and C-linkers according to the invention described above were constructed as an optional component of the plasmid vector according to the invention. For encoding proteins with either N- or C-terminal protein transduction domains for cloning Domain for cloning appropriate nucleotide sequences which are useful in gene therapy into the Not I interface of the plasmid vector according to the invention. According to the invention, two versions of therapy plasmids are therefore preferably provided. On the one hand pCURE2C, on the other hand pCURE2N (Figure 2).
Im Zusammenhang mit der vorliegenden Erfindung wird unter dem Begriff "gentherapeutischer Zweck" verstanden, dass der erfindungsgemäße Vektor, insbe- sondere Plasmidvektor, für jegliche gentherapeutische Zwecke eingesetzt werden kann, insbesondere für das Einführen von körperfremden oder körpereigenen Nucleinsäuresequenzen, insbesondere DNA- Sequenzen, in Zielzellen. Erfindungsgemäß können als Zielzellen beliebige Zellen des menschlichen oder tierischen Körpers, zum Beispiel eines Säugetierkörpers verstanden werden. Es kann sich dabei um Embryonal-, Stamm-, Körper- oder Keimbahnzellen jeglichen Entwicklungsstadiums handeln. Die Erfin- düng betrifft also auch die Verwendung des Vektors, insbesondere Plasmidvektors, sowohl für die Soma- zell-Gentherapie als auch für die Keimbahn- Gentherapie. Die Erfindung erfasst jedoch auch die Verwendung des Vektors, insbesondere Plasmidvek- tors, für andere als gentherapeutische Zwecke, zum Beispiel für Forschungszwecke oder für gendiagnostische Zwecke.In connection with the present invention, the term “gene therapy purpose” is understood to mean that the vector according to the invention, in particular plasmid vector, can be used for any gene therapy purposes, in particular for the introduction of foreign or endogenous nucleic acid sequences, in particular DNA sequences target cells. According to the invention, any cells of the human or animal body, for example a mammalian body, can be understood as target cells. These can be embryonic, stem, body or germline cells of any stage of development. The invention therefore also relates to the use of the vector, in particular plasmid vector, both for somacell gene therapy and for germline gene therapy. However, the invention also covers the use of the vector, in particular plasmid vector, for purposes other than gene therapy, for example for research purposes or for genetic diagnostic purposes.
Im Zusammenhang mit der vorliegenden Erfindung wird unter dem Begriff "operativ miteinander verknüpft" verstanden, dass die miteinander verknüpften Elemente so miteinander verknüpft sind, dass sie bestimmungsgemäß zusammenwirken können, zum Beispiel dass operativ miteinander verknüpfte Transkriptionselemente eine korrekte Transkription gewährleisten. Operativ miteinander verknüpfte Transkriptions- und Translationselemente ermöglichen eine kor- rekte Expression, das heißt insbesondere Transkription und Translation, zu einem funktionsfähigen Translationsprodukt .In connection with the present invention, the term “operatively linked to one another” is understood to mean that the linked elements are linked to one another in such a way that they can interact as intended, for example that operatively linked transcription elements ensure correct transcription. Operatively linked transcription and translation elements enable correct expression, that is to say in particular transcription and translation, to form a functional translation product.
Im Zusammenhang mit der vorliegenden Erfindung werden unter „gentherapeutisch sinnvollen" Nucleotid- Sequenzen, zum Beispiel auch Gene, Genabschnitte oder andere strukturelle Genombereiche verstanden, deren Einfügen in eine Zielzelle aus therapeutischer Sicht sinnvoll ist. Die zu inserierenden Nucleotidsequenzen, insbesondere Gene, können endogen oder exogen zu der Zielzelle sein. Es kann sich dabei um Nucleotidsequenzen handeln, die zur Kom- plementation oder Korrektur von Gendefekten im behandelten Körper dienen. Es können darunter jedoch auch ein oder mehrere Genabschnitte verstanden wer- den, die dem Ausschalten von Zielgenen in Zielzellen dienen, beispielsweise mittels homologer Rekombination. Gentherapeutisch sinnvolle Nucleotidsequenzen, insbesondere Gene oder Genabschnitte, können auch Antisinn-Konstrukte sein, die der Transkriptionsinhibition in der Zielzelle dienen und damit die Expression bestimmter Proteine verhindern oder reduzieren.In connection with the present invention, “gene therapy meaningful” nucleotide sequences are understood, for example also genes, gene segments or other structural genome regions, the insertion of which into a target cell makes sense from a therapeutic point of view. The nucleotide sequences to be inserted, in particular genes, can be endogenous or Exogenous to the target cell These can be nucleotide sequences which serve to complement or correct gene defects in the body being treated, but can also be understood to mean one or more gene sections which serve to switch off target genes in target cells Nucleotide sequences, in particular genes or gene segments, which are useful in gene therapy can also be antisense constructs which serve to inhibit transcription in the target cell and thus prevent or reduce the expression of certain proteins.
Für die Insertion in den vorliegenden Plasmidvektor geeignete Gene oder Genabschnitte können natürlich auch Protein-codierende oder nicht-Protein codierende Bereiche sein. Im Zusammenhang mit der vorliegenden Erfindung werden unter gentherapeutisch sinnvollen Proteinen Genprodukte verstanden, die in natürlicher Form, das heißt Wildtypform, oder modifizierter Form in Zielzellen nach Einfügen mittels gentechnologischer Methoden exprimiert werden.Genes or gene segments suitable for insertion into the present plasmid vector can of course also be protein-coding or non-protein-coding regions. In connection with the present invention, gene therapy will be under meaningful proteins understood gene products that are expressed in natural form, ie wild-type form, or modified form in target cells after insertion by means of genetic engineering methods.
Derartige gentherapeutisch sinnvolle Proteine können beliebige Proteine sein, die zum Beispiel in defekter Form in der Zelle vorkommen oder dort gar nicht exprimiert werden und mittels der Gentherapie in die Zelle eingebracht werden können, es können aber auch Proteine sein, die in der Zielzelle auch natürlicherweise nicht vorkommen, gleichwohl aber therapeutisch dort erwünscht sind. Derartige Proteine können auch als Proteinfragmente oder Fusionsproteine ausgeführt sein und gegebenenfalls Modifi- kationen, zum Beispiel posttranslationelle Modifikationen, aufweisen. Von besonderem Interesse sind Gene, die in der Zielzelle abwesende, in verringerter Menge oder in mutanter Form vorhandene Proteine codieren. Derartige Proteine können insbesondere Hormone, Wachstumsfaktoren, Enzyme, Lymphokine, Cy- tokine, Rezeptoren und ähnliches ein. Insbesondere kann es sich um Faktor VIII, tPA oder den Molybdän- Cofaktor handeln.Proteins of this type which are useful in gene therapy can be any proteins which, for example, occur in defective form in the cell or are not expressed there at all and can be introduced into the cell by means of gene therapy, but can also be proteins which are not naturally present in the target cell occur, but are nevertheless therapeutically desirable there. Such proteins can also be designed as protein fragments or fusion proteins and optionally have modifications, for example post-translational modifications. Of particular interest are genes which code for proteins which are absent in the target cell, are present in reduced amounts or in mutant form. Such proteins can include, in particular, hormones, growth factors, enzymes, lymphokines, cytokines, receptors and the like. In particular, it can be factor VIII, tPA or the molybdenum cofactor.
Die Molybdän-Cofaktor-Defizienz ist eine schwere neurologische bisher nicht therapierbare und schließlich letale Erkrankung. Hier reichen kleinste Mengen an intaktem Cofaktor und somit auch an Biosynthese-Enzymen für einen klinisch unauffälligen Phänotyp aus. Hauptsyntheseort ist die Leber, die relativ gut erreichbar ist. Die hier gebildeten Enzyme können aufgrund der erfindungsgemäßen Vorgehensweise unter Verwendung des erfindungsgemäß ein- gesetzten Translokationssignales exportiert und auch vom Gehirn aufgenommen werden.Molybdenum cofactor deficiency is a severe neurological disease that has not yet been treated and is ultimately fatal. The smallest amounts of intact cofactor and thus also of biosynthesis enzymes are sufficient for a clinically unremarkable phenotype. The main synthesis site is the liver, which is relatively easy to reach. Because of the procedure according to the invention, the enzymes formed here can be used using the set translocation signals are exported and also recorded by the brain.
Die vorliegende Erfindung betrifft daher auch Verfahren zur Behandlung der Molybdän-Cofaktor- Defizienz und Molybdän-Cofaktor-Mangelkrankheiten, wie der Sulfitoxidasemangel oder der Xantin- oxidasemangel .The present invention therefore also relates to methods for the treatment of molybdenum cofactor deficiency and molybdenum cofactor deficiency diseases, such as the sulfite oxidase deficiency or the xanthine oxidase deficiency.
Weitere Beispiele für zu inserierende Gene sind Gene die für Hämoglobin, Interleukin-1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, GM-CSF, G-CSF, M-CSF, menschlichen Wachstumsfaktor, Insulin, Faktor IX, LDL- Rezeptoren, Tumornecrosefaktor, PDGF, EGF, NGF, IL- lra, EPO, TPO, Beta-Globin sowie biologisch aktive Muteine dieser Proteine codieren.Further examples of genes to be inserted are genes for hemoglobin, interleukin-1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, GM-CSF, G-CSF, M-CSF, human growth factor , Insulin, factor IX, LDL receptors, tumor necrosis factor, PDGF, EGF, NGF, IL-lra, EPO, TPO, beta-globin and biologically active muteins of these proteins.
Da der erfindungsgemäße Plasmidvektor insbesondere auch zur Expression der Fusionsproteine im Bronchialepithel führt, sind erfindungsgemäß auch Nucleotidsequenzen in dem erfindungsgemäßen Plasmidvektor vorgesehen, die therapeutisch sinnvolle Proteine zur Behandlung von Mukoviszidose (zystische Fibröse der Lunge) codieren. Die vorliegende Erfindung betrifft daher auch ein Verfahren zur Behandlung von Mukoviszidose .Since the plasmid vector according to the invention also leads in particular to the expression of the fusion proteins in the bronchial epithelium, nucleotide sequences are also provided according to the invention in the plasmid vector according to the invention, which code therapeutically useful proteins for the treatment of cystic fibrosis (cystic fibrosis of the lungs). The present invention therefore also relates to a method for the treatment of cystic fibrosis.
In einer weiteren bevorzugten Ausführungsform ist vorgesehen, dass der erfindungsgemäße Plasmidvektor als konstitutiv exprimierenden Promotor den humanen beta-Aktin-Promotor enthält, der insbesondere kein Intron umfasst. In einer bevorzugten Variante dieser Ausführungsform umfasst der humane beta-Aktin- Promotor die Nucleotidsequenz SEQ ID Nr. 10. Ent- sprechend dieser erfindungsgemäßen Variante des Promotor-Bereichs wird diese einfachste Promotorstruktur ohne Intron als Plasmidvektor pCURE2basic bezeichnet .In a further preferred embodiment it is provided that the plasmid vector according to the invention contains the constitutive expressing promoter, the human beta-actin promoter, which in particular does not include an intron. In a preferred variant of this embodiment, the human beta-actin promoter comprises the nucleotide sequence SEQ ID No. 10. Ent- speaking of this variant of the promoter region according to the invention, this simplest promoter structure without intron is referred to as plasmid vector pCURE2basic.
In einer weiteren Ausführungsform ist vorgesehen, dass der Plasmidvektor einen Expressionsverstärker, insbesondere einen Enhancer, besonders bevorzugt den CMV-enhancer aufweist. In einer weiteren bevorzugten Ausführungsform des erfindungsgemäßen Plas- midvektors umfasst der konstitutiv exprimierende Promotor in 5'- zu 3' -Richtung eine den CMV- enhancer codierende Nucleotidsequenz und den humanen beta-Aktin-Promotor . In einer bevorzugten Variante umfasst die den CMV-enhancer codierende Nucle- otidsequenz die Nucleotidsequenz SEQ ID Nr. 9.In a further embodiment it is provided that the plasmid vector has an expression enhancer, in particular an enhancer, particularly preferably the CMV enhancer. In a further preferred embodiment of the plasmid vector according to the invention, the constitutively expressing promoter comprises in the 5 'to 3' direction a nucleotide sequence coding the CMV enhancer and the human beta-actin promoter. In a preferred variant, the nucleotide sequence encoding the CMV enhancer comprises the nucleotide sequence SEQ ID No. 9.
In einer weiteren erfindungsgemäßen Variante umfasst der humane beta-Aktin-Promotor sein natives Intron. Der so bereitgestellte erfindungsgemäße Plasmidvektor wird als pCURE2natin bezeichnet.In a further variant according to the invention, the human beta-actin promoter comprises its native intron. The plasmid vector according to the invention thus provided is referred to as pCURE2natin.
In einer weiteren Variante umfasst der im erfindungsgemäßen Plasmidvektor enthaltene humane beta- Aktin-Promotor ein verkürztes Intron, das die nati- ven 5'- und 3' -Spleissstellen und ein verkürztes „stufferλλ-Fragment . In einer weiteren Variante um- fasst das verkürzte Intron des humanen beta-Aktin- Promotors zusätzlich eine den SV40-enhancer codierende Nucleotidsequenz. Erfindungsgemäß bevorzugt ist dabei das „stuffer"-Fragment soweit verkürzt, so dass es lediglich die „branch site" umfasst. Insbesondere ist das „stuffer"-Fragment um 700 bis 800 bp verkürzt, besonders bevorzugt ist das stuf- fer-Fragment um 761 bp verkürzt. Die so bereitgestellten erfindungsgemäßen Plasmidvektoren werden als pCURE2minin (beinhaltend das verkürzte Intron) beziehungsweise pCURE2enhin (beinhaltend das ver- kürzte Intron und den SV40-enhancer) bezeichnet.In a further variant, the human beta-actin promoter contained in the plasmid vector according to the invention comprises a shortened intron, the native 5 'and 3' splice sites and a shortened "stuffer λλ fragment. In a further variant, the shortened intron of the human beta-actin promoter additionally comprises a nucleotide sequence coding for the SV40 enhancer. According to the invention, the “stuffer” fragment is preferably shortened to such an extent that it only comprises the “branch site”. In particular, the “stuffer” fragment is shortened by 700 to 800 bp; the staged fer fragment shortened by 761 bp. The plasmid vectors according to the invention thus provided are referred to as pCURE2minin (containing the shortened intron) or pCURE2enhin (containing the shortened intron and the SV40 enhancer).
In einer bevorzugten Ausführungsform des erfindungsgemäßen Plasmidvektors ist die Polyadenylierungsstelle das SV40-Polyadenylierungssignal, in einer weiteren Variante ist die Polyadenylie- rungsstelle ein BGH-Polyadenylierungssignal (= BGHpA) des bovinen Wachstumshormons (bovine growth hormone) . Besonders bevorzugt ist die Polyadenylierungsstelle das BGH-Polyadenylierungssignal umfassend die Nucleotidsequenz SEQ ID Nr. 6.In a preferred embodiment of the plasmid vector according to the invention, the polyadenylation site is the SV40 polyadenylation signal, in a further variant the polyadenylation site is a BGH polyadenylation signal (= BGHpA) of the bovine growth hormone (bovine growth hormone). The polyadenylation site is particularly preferably the BGH polyadenylation signal comprising the nucleotide sequence SEQ ID No. 6.
Erfindungsgemäß bevorzugt ist in 5'- zu 3' -Richtung nach dem konstitutiv exprimierenden Promotor und unmittelbar vor der eine Translokationssequenz kodierenden Nucleotidsequenz eine Ribosomenbin- dungsstelle (RBS) mit Startkodon lokalisiert.According to the invention, a ribosome binding site (RBS) with a start codon is located in the 5 'to 3' direction after the constitutively expressing promoter and immediately before the nucleotide sequence encoding a translocation sequence.
Erfindungsgemäß außerdem bevorzugt ist in dem erfindungsgemäßen Plasmidvektor in 5'- zu 3' -Richtung nach dem konstitutiv exprimierenden Promotor und vor der eine Translokationssequenz codierenden Nucleotidsequenz eine multiple Clonierungsstelle für die Insertion mindestens eines regulatorischen Elemente lokalisiert. In einer bevorzugten Variante des erfindungsgemäßen Plasmidvektors ist das mindestens eine regulatorische Element ein gewebespezifischer Promotor. In einer weiteren bevorzugten Ausführungsform sieht die Erfindung vor, dass der erfindungsgemäße Plasmidvektor mindestens ein Resistenzgen, insbesondere ein bakterielles Resistenzgen enthält. In einer be- vorzugten Variante ist dieses bakterielle Resistenzgen das ampR-Gen für die Ampicilin- Resistenz. In einer alternativen Variante ist das bakterielle Resistenzgen ein kanR-Gen für Kanami- cin-Resistenz . Bevorzugt umfasst das kanR-Gen die Nucleotidsequenz SEQ ID Nr. 7.According to the invention, a multiple cloning site for the insertion of at least one regulatory element is preferably located in the plasmid vector according to the invention in the 5 'to 3' direction after the constitutively expressing promoter and before the nucleotide sequence coding for a translocation sequence. In a preferred variant of the plasmid vector according to the invention, the at least one regulatory element is a tissue-specific promoter. In a further preferred embodiment, the invention provides that the plasmid vector according to the invention contains at least one resistance gene, in particular a bacterial resistance gene. In a preferred variant, this bacterial resistance gene is the amp R gene for ampicilin resistance. In an alternative variant, the bacterial resistance gene is a kan R gene for kanaminicin resistance. The kan R gene preferably comprises the nucleotide sequence SEQ ID No. 7.
Die Erfindung sieht in einer weiteren Ausführungsform vor, dass das mindestens eine Resistenzgen mindestens eine Schnittstelle zum Linearisieren und/oder Inaktivieren des Resistenzgens aufweist.In a further embodiment, the invention provides that the at least one resistance gene has at least one interface for linearizing and / or inactivating the resistance gene.
In einer weiteren Ausführungsform ist es bevorzugt, dass der Plasmidvektor mindestens einen Replikati- onsursprung für die Plasmidanzucht insbesondere in Bakterien aufweist. In einer bevorzugten Variante umfasst der Replikationsursprung die Nucleotidse- quenz SEQ ID Nr. 8.In a further embodiment, it is preferred that the plasmid vector has at least one origin of replication for plasmid cultivation, particularly in bacteria. In a preferred variant, the origin of replication comprises the nucleotide sequence SEQ ID No. 8.
Erfindungsgemäß bevorzugt ist der Plasmidvektor aus dem bekannten Vektor pcDNA 3.1 (-) abgeleitet und ist insbesondere 3,4 kbp groß (Figur 1). In einer besonders bevorzugten alternativen Ausführungsform ist der erfindungsgemäße Plasmidvektor lediglich 2,8 kbp groß und umfasst insbesondere bevorzugt die Nucleotidsequenz SEQ ID Nr. 11 (Figur 2) .According to the invention, the plasmid vector is preferably derived from the known vector pcDNA 3.1 (-) and is in particular 3.4 kbp in size (FIG. 1). In a particularly preferred alternative embodiment, the plasmid vector according to the invention is only 2.8 kbp in size and particularly preferably comprises the nucleotide sequence SEQ ID No. 11 (FIG. 2).
Die Erfindung betrifft in einer weiteren Ausführungsform auch Wirtszellen oder Zellen einer Zell- kultur, enthaltend mindestens einen Plasmidvektor der vorliegenden Erfindung. Eine derartige Wirtszelle kann unter anderem eine bakterielle Zelle, eine Hefezelle, eine tierische Zelle, zum Beispiel eine Säuger- oder Insektenzelle oder eine menschli- ehe Zelle sein.In a further embodiment, the invention also relates to host cells or cells of a cell culture containing at least one plasmid vector of the present invention. Such a host cell can be, inter alia, a bacterial cell, a yeast cell, an animal cell, for example a mammalian or insect cell or a human cell.
Die Erfindung betrifft auch Verfahren zur genetischen Modifizierung einer Zelle, zum Beispiel einer tierischen oder menschlichen Zelle, umfassend das Inkontaktbringen der Zelle mit einem Vektor, insbe- sondere Plasmidvektor, gemäß der vorliegenden Erfindung unter Bedingungen, die eine Aufnahme des Vektors, insbesondere Plasmidvektors, in die Zelle, insbesondere das Genom der Zelle erlauben.The invention also relates to methods for the genetic modification of a cell, for example an animal or human cell, comprising contacting the cell with a vector, in particular plasmid vector, according to the present invention under conditions which include an uptake of the vector, in particular plasmid vector allow the cell, especially the cell's genome.
Die Erfindung betrifft daher auch Verfahren zur Herstellung genetisch modifizierter Zellen, wobei die genetisch zu modifizierenden Zellen mit einem Vektor, insbesondere Plasmidvektor, der vorliegenden Erfindung in Kontakt gebracht und dabei tran- sient oder stabil transformiert werden.The invention therefore also relates to methods for producing genetically modified cells, the cells to be genetically modified being brought into contact with a vector, in particular a plasmid vector, of the present invention and being transiently or stably transformed.
Die Erfindung betrifft auch die Verwendung eines Vektors, insbesondere Plasmidvektors, der vorliegenden Erfindung für die Herstellung eines Präparates, insbesondere eines pharmazeutischen Präparates für die Gentherapie, insbesondere die somatische Gentherapie.The invention also relates to the use of a vector, in particular plasmid vector, of the present invention for the production of a preparation, in particular a pharmaceutical preparation for gene therapy, in particular somatic gene therapy.
Die Erfindung betrifft daher auch Präparate, insbesondere pharmazeutische Präparate, enthaltend mindestens einen Vektor, insbesondere Plasmidvektor, der vorliegenden Erfindung, gegebenenfalls zusammen mit einem pharmazeutisch verträglichen Träger. Weitere vorteilhafte Ausgestaltungen der Erfindung ergeben sich aus den Unteransprüchen.The invention therefore also relates to preparations, in particular pharmaceutical preparations, containing at least one vector, in particular plasmid vector, of the present invention, optionally together with a pharmaceutically acceptable carrier. Further advantageous embodiments of the invention result from the subclaims.
Die Erfindung wird anhand der nachstehenden Beispiele, der dazugehörigen Figuren und Sequenzproto- kolle näher erläutert.The invention is explained in more detail with the aid of the following examples, the associated figures and sequence protocols.
Im Sequenzprotokoll stellen darShow in the sequence listing
SEQ ID Nr. 1 die 33 die HIV-TAT-Leitpeptidsequenz (SEQ ID Nr. 2) codierenden Nucleotide,SEQ ID No. 1 the 33 nucleotides encoding the HIV-TAT lead peptide sequence (SEQ ID No. 2),
SEQ ID Nr. 2 die 11 Aminosäuren der natürlich vor- kommenden HIV-TAT-Leitpeptidsequenz,SEQ ID No. 2 the 11 amino acids of the naturally occurring HIV-TAT lead peptide sequence,
SEQ ID Nr. 3 die 49 Nucleotide enthaltende Nucleotidsequenz des die RBS, die HIV-TAT-Region und No- tl-Clonierungsstelle umfassenden Bereichs von pCU- RE,SEQ ID No. 3 the nucleotide sequence containing 49 nucleotides of the region of pCU-RE comprising the RBS, the HIV-TAT region and the NoTl cloning site,
SEQ ID Nr. 4 die Aminosäuresequenz der Helix der Homöodomäne von Antennipedia,SEQ ID No. 4 the amino acid sequence of the helix of the home domain from Antennipedia,
SEQ ID Nr. 5 die 11 Aminosäuren der modifizierten, nicht natürlich vorkommenden HIV-TAT-Leitpeptidsequenz,SEQ ID No. 5 the 11 amino acids of the modified, non-naturally occurring HIV-TAT lead peptide sequence,
SEQ ID Nr. 6 die 235 Nucleotide enthaltende Nucleotidsequenz des BGH-Polyadenylierungssignals,SEQ ID No. 6 the nucleotide sequence of the BGH polyadenylation signal containing 235 nucleotides,
SEQ ID Nr. 7 die 1189 Nucleotide enthaltende Nucleotidsequenz des Kanamicin-Resistenzgens kanR, SEQ ID Nr. 8 die 661 Nucleotide enthaltende Nucleotidsequenz des Replikationsursprungs (origin of replication) ,SEQ ID No. 7 the nucleotide sequence of the kanamicin resistance gene kan R containing 1189 nucleotides, SEQ ID No. 8 the nucleotide sequence of the origin of replication containing 661 nucleotides,
SEQ ID Nr. 9 die 348 Nucleotide enthaltende Nucleo- tidsequenz des CMV-enhancer,SEQ ID No. 9 the nucleotide sequence of the CMV enhancer containing 348 nucleotides,
SEQ ID Nr. 10 die 377 Nucleotide enthaltende Nucleotidsequenz des beta-Aktin-Promotors,SEQ ID No. 10 the nucleotide sequence of the beta-actin promoter containing 377 nucleotides,
SEQ ID Nr. 11 die 2810 Nucleotide enthaltende Nucleotidsequenz des erfindungsgemäßen Plasmidvektors pCURE2basic (ohne eine clonierte gentherapeutisch sinnvolle Nucleotidsequenz),SEQ ID No. 11 the nucleotide sequence of the plasmid vector pCURE2basic according to the invention containing 2810 nucleotides (without a cloned nucleotide sequence which makes sense in terms of gene therapy),
SEQ ID Nr. 12 zeigt die 40 Nucleotide enthaltende Nucleotidsequenz des die modifizierte HIV-TAT- Leitpeptidsequenz (SEQ ID Nr. 5) codierenden „N- linker" aus synthetischen Oligonucleotiden 2NF und 2NR undSEQ ID No. 12 shows the nucleotide sequence containing 40 nucleotides of the “N-linker” encoding the modified HIV-TAT leading peptide sequence (SEQ ID No. 5), consisting of synthetic oligonucleotides 2NF and 2NR and
SEQ ID Nr. 13 die 37 Nucleotide enthaltende Nucleotidsequenz des die modifizierte HIV-TAT- Leitpeptidsequenz (SEQ ID Nr. 5) codierenden „C- linker" aus synthetischen Oligonucleotiden 2CF und 2CR.SEQ ID No. 13 contains the nucleotide sequence containing the 37 nucleotides of the “C-linker” encoding the modified HIV-TAT lead peptide sequence (SEQ ID No. 5), consisting of synthetic oligonucleotides 2CF and 2CR.
Die Figuren zeigen:The figures show:
Figur 1 eine grafische Darstellung des Plasmids pCURE,FIG. 1 shows a graphic representation of the plasmid pCURE,
Figur 2 eine grafische Darstellung des Plasmids pCURE2basic, Figur 3 eine in situ Färbung einer erfindungsgemäß transformierten Gehirnhälfte und eine Kontrolle,FIG. 2 shows a graphic representation of the plasmid pCURE2basic, FIG. 3 shows an in situ coloring of a brain half transformed according to the invention and a control,
Figur 4 Dünnschnitte von Leber und Gehirn (jeweils Negativkontrolle und erfindungsgemäß transformiert) ,FIG. 4 thin sections of the liver and brain (each negative control and transformed according to the invention),
Figur 5 Dünnschnitte eines erfindungsgemäß transformierten Gehirns nach intrahepatischer Injektion von pCURE2Cbasic-lacZ (Figur 5A) und Dünnschnitt des Gehirns eines un- behandelten Kontrolltieres (Figur 5B) ,5 shows thin sections of a brain transformed according to the invention after intrahepatic injection of pCURE2Cbasic-lacZ (FIG. 5A) and thin section of the brain of an untreated control animal (FIG. 5B),
Figur 6 Dünnschnitte einer Lunge mit erfindungsgemäß transformiertem Bronchialepithel nach intrahepatischer Injektion von pCURE2Cbasic-lacZ (Figur 6A) und Dünnschnitt der Lunge eines unbehandelten Kontrolltieres (Figur 6B) .6 shows thin sections of a lung with bronchial epithelium transformed according to the invention after intrahepatic injection of pCURE2Cbasic-lacZ (FIG. 6A) and thin section of the lung of an untreated control animal (FIG. 6B).
Beispiel 1: Herstellung des Plasmids pCUREExample 1: Preparation of the plasmid pCURE
Der Expressionsvektor pcDNA 3.1 (-) von Invitrogen (Kat.-Nr. V 795-20) wurde mit EcoRV und Nael gespalten. Anschließend wurde das Plasmid religiert und die Nucleotidsequenz gemäß SEQ ID Nr. 3 in die Notl-Stelle inseriert.The expression vector pcDNA 3.1 (-) from Invitrogen (cat. No. V 795-20) was cleaved with EcoRV and Nael. The plasmid was then religated and the nucleotide sequence according to SEQ ID No. 3 was inserted into the NotI site.
Figur 1 stellt grafisch das Plasmid pCURE in PVU I- linearisierter Form (von links nach rechts in 5'- zu 3 ' -Orientierung) dar. Die in Figur 1 verwendeten Abkürzungen bedeuten: PCMV CMV-Promotor zur zelltypunabhängigen Expression (Quelle: pcDNA3.1(-))FIG. 1 graphically represents the plasmid pCURE in PVU I linearized form (from left to right in 5 'to 3' orientation). The abbreviations used in FIG. 1 mean: P CMV CMV promoter for cell type-independent expression (source: pcDNA3.1 (-))
MCS Multiple Clonierungsstelle für gewebespezifische Promotoren: NhelU, Pmel, Drall, Apal, Xbal, XholMCS multiple cloning site for tissue-specific promoters: NhelU, Pmel, Drall, Apal, Xbal, Xhol
RBS Ribosomale Bindungsstelle mit StartcodonRBS ribosomal binding site with start codon
TAT TAT leader-Sequenz als Translokations- signal für interzellulären TransportTAT TAT leader sequence as translocation signal for intercellular transport
Notl Insertionsstelle (Clonierungsstelle) für zum Beispiel therapeutisch sinnvolle cDNANotl insertion site (cloning site) for, for example, therapeutically useful cDNA
SV40pA SV40 Polyadenylierungssignal und TranskriptionsterminationSV40pA SV40 polyadenylation signal and transcription termination
pMBl Replikationsursprung (origin of replica- tion) ("pUC-derived") für Plasmidanzucht in BakterienpMBl origin of replication ("pUC-derived") for plasmid cultivation in bacteria
amp Ampicillin-Resistenzgenampicillin resistance gene
Pvul Schnittstelle zum Linearisieren und Inaktivieren der Amplicillin-ResistenzPvul interface to linearize and inactivate amplicillin resistance
pCUREl hat ohne inserierte DNA eine Größe von 3,4 kbp.pCUREl has a size of 3.4 kbp without inserted DNA.
Figur 1 kann entnommen werden, dass zwischen PCM also dem CMV-Promotor, und der ribosomalen Bindungsstelle eine multiple Clonierungsstelle MCS angeordnet ist. In 3' -Richtung davon folgen eine TAT- leader-Sequenz, eine Notl-Insertionsstelle sowie die SV40pA Polyadenylierungsstelle.FIG. 1 shows that a multiple cloning site MCS is arranged between P CM, ie the CMV promoter, and the ribosomal binding site. In the 3 'direction of which follow a TAT leader sequence, a Notl insertion site and the SV40pA polyadenylation site.
Beispiel 2: Herstellung des Plasmids pCURE-lacZExample 2: Preparation of the plasmid pCURE-lacZ
pCURE-lacZ wurde konstruiert durch Clonierung des lacZ-Gens aus E. coli in die Notl-Schnittstelle von pCURE (Figur 1) . Das resultierende Plasmid pCURE- lacZ enthält die Aminosäuren 8 bis 1023 der E.coli beta-Galaktosidase, die Xgal zu einem blauen Farb- stoff umsetzen. Diese katalytische Domäne liegt im Leseraster hinter der HIV-TAT-Translokations- Leader-Sequenz, welche einen interzellulären Transport ermöglicht.pCURE-lacZ was constructed by cloning the lacZ gene from E. coli into the NotI site of pCURE (Figure 1). The resulting plasmid pCURE-lacZ contains amino acids 8 to 1023 of E. coli beta-galactosidase, which convert Xgal to a blue dye. This catalytic domain lies in the reading frame behind the HIV-TAT translocation leader sequence, which enables intercellular transport.
Beispiel 3: Intraperitoneale Applikation von pCURE-lacZ in MäusenExample 3: Intraperitoneal application of pCURE-lacZ in mice
pCURE-lacZ wurde im mg-Maßstab steril und pyro- genfrei aus dem E.coli-Stamm JM109 isoliert (Qiagen endomaxiprep kit) und nach Konzentrationsbestimmung auf 150 mM Phosphatpuffer, pH 7,0, eingestellt (dieser Puffer dient auch als Injektionslösung für die Kontrollmäuse) .pCURE-lacZ was isolated on a mg scale, sterile and pyrogen-free from the E.coli strain JM109 (Qiagen endomaxiprep kit) and after concentration determination adjusted to 150 mM phosphate buffer, pH 7.0 (this buffer also serves as an injection solution for the Control mice).
Die Injektionen mit pCURE-lacZ erfolgten an gesunden Mäusen. Neugeborenen Mäusen wurden 50 μg pCURE- lacZ in 50 μl Phosphatpuffer direkt in die Leber gespritzt. Nach 96 h wurden die Tiere getötet und verschiedene Organe entnommen. Hirn, Leber, Herz und Lunge wurden in toto in flüssigem Stickstoff eingefroren und bei -70 °C bis zur weiteren Analyse aufbewahrt. Obengenannte Organe wurden in Xgal-Färbelösung (Stratagene Xgal in si tu detection kit) bei 37 °C über Nacht inkubiert und nach Einbettung in Paraffin für Dünnschnitte von 10-40 μm verwendet.The injections with pCURE-lacZ were made in healthy mice. Newborn mice were injected with 50 μg pCURE-lacZ in 50 μl phosphate buffer directly into the liver. After 96 hours, the animals were sacrificed and various organs were removed. Brain, liver, heart and lungs were frozen in liquid nitrogen and stored at -70 ° C until further analysis. The above-mentioned organs were incubated in Xgal staining solution (Stratagene Xgal in si tu detection kit) at 37 ° C overnight and used after embedding in paraffin for thin sections of 10-40 μm.
Ergebn isse :Results :
Figur 3 zeigt in toto gefärbte Gehirnhälften nach Xgal-Inkubation. Links: Injektion von 50 μg pCURE-lacZ. Rechts: Injektion von 50 μl Phosphatpuffer (Negativkontrolle) .FIG. 3 shows brain halves stained in total after Xgal incubation. Left: injection of 50 μg pCURE-lacZ. Right: injection of 50 μl phosphate buffer (negative control).
Figur 4 zeigt paraffin-fixierte Dünnschnitte der entsprechenden Organe, a) und b) Lebergewebe: a) Negativkontrolle b) Injektion von pCURE-lacZ. c) und d) Gehirn: c) Negativkontrolle d) Injektion von pCURE-lacZ.FIG. 4 shows paraffin-fixed thin sections of the corresponding organs, a) and b) liver tissue: a) negative control b) injection of pCURE-lacZ. c) and d) brain: c) negative control d) injection of pCURE-lacZ.
Deutlich ist zu erkennen, dass die erfindungsgemäßen Vektoren erfolgreich in das Gewebe transferiert, dort exprimiert und die Genprodukte auch in nicht transfizierte Organe, insbesondere das Gehirn, transportiert wurden.It can be clearly seen that the vectors according to the invention were successfully transferred into the tissue, expressed there and the gene products were also transported into non-transfected organs, in particular the brain.
Beispiel 4: Die Plasmide pCURE2basic, pCURE2nativ, pCURE2minin und pCURE2enhinExample 4: The plasmids pCURE2basic, pCURE2nativ, pCURE2minin and pCURE2enhin
Der auf dem Therapieplasmid pCURE gemäß Beispiel 1 vorhandene CMV-Promotor wird ersetzt durch ver- schiedene Varianten des menschlichen beta-Aktin- Promotors. Beide Promotoren werden ubiquitär, also in allen Organen exprimiert. Ausgehend von diesen Vorversuchen wird zunächst der menschliche beta- Aktin-Promotor unter Verwendung genomischer Klone und PCR-Technologien zur Verwendung in den Therapieplasmiden isoliert. Das menschliche beta-Aktin- Gen wird lebenslang ubiquitär exprimiert, eine Pro- motor-Inaktivierung wird so umgangen. Um einerseits maximal mögliche Expressionsraten zu erhalten und andererseits die Größe des Gesamt-Plasmids so klein wie möglich zu halten -da dies wiederum unmittelbar die Transfektionsraten beeinflusst- wird erfindungsgemäß der menschliche beta-Aktin-Promotor in insgesamt vier verschiedenen Varianten des Promotorbereichs verwendet:The CMV promoter present on the therapy plasmid pCURE according to Example 1 is replaced by various variants of the human beta-actin promoter. Both promoters are expressed ubiquitously, i.e. in all organs. On the basis of these preliminary experiments, the human beta actin promoter is first used using genomic clones and PCR technologies for use in the therapy plasmids. The human beta-actin gene is ubiquitously expressed for life, thus bypassing promoter inactivation. In order to obtain maximum possible expression rates on the one hand and on the other hand to keep the size of the total plasmid as small as possible - since this in turn directly influences the transfection rates - the human beta-actin promoter is used according to the invention in a total of four different variants of the promoter area:
a) CMV-enhancer + beta-Aktin-Promotor + BGHpA (kein Intron)a) CMV enhancer + beta actin promoter + BGHpA (no intron)
b) CMV-enhancer + beta-Aktin-Promotor + natives be- ta-Aktin-Intron + BGHpA (Intron)b) CMV enhancer + beta-actin promoter + native beta-actin intron + BGHpA (intron)
c) CMV-enhancer + beta-Aktin-Promotor + verkürztes beta-Aktin-Intron + BGHpA ( ini-Intron)c) CMV enhancer + beta actin promoter + truncated beta actin intron + BGHpA (ini intron)
d) CMV-enhancer + beta-Aktin-Promotor + beta-Aktin- Intron, worin die interne Intron-Sequenz durch das SV40-enhancer-Element ersetzt ist + BGHpA (enhancer-Intron)d) CMV enhancer + beta-actin promoter + beta-actin intron, in which the internal intron sequence is replaced by the SV40 enhancer element + BGHpA (enhancer intron)
Zu a) der „reine" Promotorbereich enthält die sogenannten „CAT"- und „TATA"-Boxen zur Transkriptionsinitiation und stellt die kleinste der vier Mög- lichkeiten dar.For a) the "pure" promoter area contains the so-called "CAT" and "TATA" boxes for transcription initiation and represents the smallest of the four possibilities.
Zu b) diese Version enthält zusätzlich zum Promotor ein Intron vor dem Start-Codon beziehungsweise der kodierenden Sequenz. Das Intron besteht aus einer 5'- und 3' -Spleißstelle sowie einem internen „stuf- fer"-Fragment, das lediglich für einen gewissen Abstand zwischen den beiden Spleißstellen sorgt. Da das Intron keine kodierende Sequenz enthält, kann es nur regulatorische Eigenschaften auf der Ebene der Transkription haben.For b) this version contains, in addition to the promoter, an intron in front of the start codon or the coding sequence. The intron consists of a 5 'and 3' splice point and an internal "step fer "fragment, which only provides a certain distance between the two splice sites. Since the intron does not contain a coding sequence, it can only have regulatory properties at the level of transcription.
Zu c) Das mini-Intron enthält die nativen 5'- und 3' -Spleißstellen, der „stuffer" ist jedoch stark verkürzt, um die Größe des Gesamtplasmids gering zu halten. Der „stuffer" ist dabei so verkürzt, dass die sogenannte „branch site" noch enthalten ist. Insbesondere ist der „stuffer" des Mini-Introns um 761 bp verkürzt.Re c) The mini-intron contains the native 5 'and 3' splice points, but the "stuffer" is greatly shortened in order to keep the size of the total plasmid small. The "stuffer" is shortened so that the so-called " branch site "is still included. In particular, the" stuffer "of the mini-intron is shortened by 761 bp.
Zu d) Das enhancer-Intron entspricht dem mini- Intron zuzüglich dem SV40-enhancer-Bereich, der seinerseits als „stuffer" dient und somit einer Anforderung an den Abstand zwischen den beiden Spleißstellen Rechnung trägt. Andererseits erfüllt er zusätzlich zu dem passiven nativen „stuffer" eine Verstärkungsfunktion der Expression. Nach der Transkription wird dieser bis dahin zweimal nützliche Bereich (Kernimport und Abstandshalter) nicht mehr benötigt und wie das native Intron heraus- gespleißt .Regarding d) The enhancer intron corresponds to the mini intron plus the SV40 enhancer area, which in turn serves as a “stuffer” and thus takes into account a requirement for the distance between the two splice points. On the other hand, it fulfills the passive native “ stuffer "an expression enhancement function. After the transcription, this previously useful area (core import and spacer) is no longer needed and, like the native intron, is spliced out.
Struktur der pCURE2-Plasmide :Structure of the pCURE2 plasmids:
Der Promotorbereich bestehend aus dem CMV-enhancer (native Sequenz aus dem Cytomegalovirus, GenBank M60321) , verschiedenen Teilen des humanen beta- Aktin-Promotors (native Sequenz aus dem humanen Genom, Genbank AC006483) , in einer der oben beschrie- benen Varianten aus dem SV40 enhancer-Element (na- tive Sequenz aus dem Simian Virus 40, GenBank NC001669), bildet zusammen mit der BGH- Polyadenylierungsstelle (native Sequenz aus dem Rindergenom, GenBank J00008) die Expressionskasset- te des Therapieplasmids . Dieses besteht weiterhin aus einem Replikationsursprung (origin of replica- tion, ori) zur Plasmidvermehrung in Bakterien insbesondere die native Sequenz aus pUC9 (identisch zu pUCl3 GenBank L09130) sowie insbesondere einer Kanamycin-Resistenz (nativ aus pACYC177, GenBank X06402) zur Antibiotika-Selektion in Bakterien.The promoter area consisting of the CMV enhancer (native sequence from the cytomegalovirus, GenBank M60321), different parts of the human beta actin promoter (native sequence from the human genome, Genbank AC006483), in one of the variants described above from the SV40 enhancer element (na- tive sequence from Simian Virus 40, GenBank NC001669), together with the BGH polyadenylation site (native sequence from the bovine genome, GenBank J00008) forms the expression cassette of the therapy plasmid. This also consists of an origin of replication (ori) for plasmid propagation in bacteria, in particular the native sequence from pUC9 (identical to pUCl3 GenBank L09130) and in particular a kanamycin resistance (native from pACYC177, GenBank X06402) for antibiotic selection in bacteria.
Die Kanamycin-Resistenz hat gegenüber der in pCURE (Beispiel 1) verwendeten Ampicillin-Resistenz den weiteren Vorteil, dass ihre Verwendung auch für klinische Prüfungen ab der Phase III zugelassen ist. Sämtliche der Sequenzelemente von pCURE2 wurden einzeln hergestellt. Es wurde also nicht wie bei pCURE ein Vorlauferplasmid wie pcDNA3.1 verwendet .The kanamycin resistance has the further advantage over the ampicillin resistance used in pCURE (example 1) that its use is also approved for clinical trials from phase III. All of the sequence elements of pCURE2 were made individually. A precursor plasmid such as pcDNA3.1 was therefore not used as in pCURE.
Darüber hinaus werden sämtliche Elemente so miteinander verknüpft, dass stets eine einzige (unique) Notl-Schnittstelle zur Einklonierung weiterer Elemente beziehungsweise einer kodierenden Sequenz zur Verfügung steht. Dies beinhaltet die gentechnische Beseitigung von Notl-Schnittstellen in der nativen beta-Aktin-Promotor-Ξequenz. Die so verknüpften E- lemente (Expressionskassette plus Replikationsursprung plus Kanamycin-Resistenzgen) bilden den Therapievektor pCURE2. Entsprechend den oben be- schriebenen vier Varianten des Promotor-Bereichs beinhaltet pCURE2basic die einfachste Promotorstruktur a (kein Intron) . pCURE2natin beinhaltet Version b (natives Intron) . pCURE2minin beinhaltet Version c (mini-Intron) . pCURE2enhin beinhaltet Version d (enhancer-Intron) .In addition, all elements are linked to one another so that a single (unique) Notl interface is always available for cloning in further elements or a coding sequence. This includes the genetic engineering of Notl interfaces in the native beta-actin promoter sequence. The elements linked in this way (expression cassette plus origin of replication plus kanamycin resistance gene) form the therapy vector pCURE2. Corresponding to the four variants of the promoter region described above, pCURE2basic contains the simplest promoter structure a (no intron). pCURE2natin includes Version b (native intron). pCURE2minin includes version c (mini-intron). pCURE2enhin contains version d (enhancer intron).
Verwendung der Translokationssequenzen :Use of the translocation sequences:
Auf Proteinebene durchgeführte Experimente zeigen, dass die Translokationseigenschaft der HIV-TAT- Proteintransduktionsdomäne (PTD) durch gezielte Aminosäure-Austausche verbessert werden kann (Ho et al., Cancer Research 2001, 61:474-477). Die besten Ergebnisse erzielt die (nicht natürlich vorkommende) Sequenz YARAAARQARA (SEQ ID Nr. 5). Diese Sequenz wird in den oben beschriebenen vier Grundvarianten von pCURE2 verwendet, um die auf dem Plasmidvektor kodierten Proteine zu fusionieren mit dieser die Translokationseigenschaft der Fusionsproteine, verursachenden Domäne.Experiments carried out at the protein level show that the translocation property of the HIV-TAT protein transduction domain (PTD) can be improved by targeted amino acid exchanges (Ho et al., Cancer Research 2001, 61: 474-477). The best results are obtained from the (non-naturally occurring) sequence YARAAARQARA (SEQ ID No. 5). This sequence is used in the four basic variants of pCURE2 described above, in order to fuse the proteins encoded on the plasmid vector with this domain which causes the translocation property of the fusion proteins.
Es werden die oben beschriebenen vier Varianten von pCURE2 jeweils konstruiert wahlweise für die Kodierung von Proteinen mit N- als auch mit C-terminaler Proteintransduktionsdomäne nach Einklonierung entsprechender kodierender Sequenzen in die unique Notl-Schnittstelle. Hieraus ergeben sich insgesamt 8 Möglichkeiten und Therapieplasmide:The four variants of pCURE2 described above are each constructed optionally for the coding of proteins with N- as well as with C-terminal protein transduction domains after the corresponding coding sequences have been cloned into the unique Notl interface. This results in a total of 8 options and therapy plasmids:
pCURE2Cbasic pCURE2Nbasic pCURE2Cnatin pCURE2Nnatin pCURE2Cminin pCURE2Nminin pCURE2Cenhin pCURE2NenhinpCURE2Cbasic pCURE2Nbasic pCURE2Cnatin pCURE2Nnatin pCURE2Cminin pCURE2Nminin pCURE2Cenhin pCURE2Nenhin
Das basale Therapieplasmid pCURE2basic mit seinen insgesamt 8 Varianten ist in Figur 2 dargestellt. Herstellung der pCURE2-Plasmide :The basal therapy plasmid pCURE2basic with a total of 8 variants is shown in FIG. 2. Preparation of the pCURE2 plasmids:
Die Sequenz für die Kanamycin-Resistenz (kanR) wird aus pACYC177 PCR amplifiziert. Der origin of repli- cation (ori) wird aus pUC9 mittels PCR amplifi- ziert. Diese beiden Sequenzen werden unter Verwendung von Schnittstellen, welche in die PCR-Pri er eingebaut wurden, miteinander verknüpft, wobei erfindungsgemäß eine unique Notl-Schnittstelle entsteht .The sequence for kanamycin resistance (kan R ) is amplified from pACYC177 PCR. The origin of replication (ori) is amplified from pUC9 by means of PCR. These two sequences are linked to one another using interfaces which were built into the PCR printer, a unique NotI interface being created according to the invention.
In diese wird die CMV-enhancer-Sequenz, die aus pCURE (Beispiel 1) mittels PCR amplifiziert worden ist, eingebaut, wobei die PCR-primer erfindungsgemäß so gewählt werden, dass nur in 3Λ-Richtung vom Enhancer (downstream) die Notl-Schnittstelle res- tauriert wird und somit unique bleibt.The CMV enhancer sequence, which was amplified from pCURE (example 1) by means of PCR, is incorporated into this, the PCR primers being selected according to the invention such that the emergency (downstream) only in the 3 Λ direction from the enhancer (downstream) Interface is restored and thus remains unique.
Die BGHpA wird aus genomischer Rinder-DNA PCR amplifiziert und nach dem Enhancer in die unique Notl-Schnittstelle eingebaut, wobei die PCR-Primer erfindungsgemäß so gewählt worden sind, dass nur die Notl-Schnittstelle vor der BGHpA (upstream) restauriert wird.The BGHpA is amplified from genomic bovine DNA PCR and installed after the enhancer in the unique Notl interface, the PCR primers having been selected according to the invention such that only the Notl interface before the BGHpA (upstream) is restored.
Zwischen Enhancer und Polyadenylierungsstelle werden je nach Promotor-Version erfindungsgemäß verschiedene Bereiche des menschlichen beta-Aktin- Promotors beziehungsweise der SV40 enhancer-Region, die jeweils zuvor aus genomischer DNA amplifiziert worden sind, eingebaut. Dieser Einbau erfolgt nach dem oben ausgeführten Prinzip, wobei Schnittstellen so in die PCR-Primer eingebaut werden, dass jeweils nur die 3 Λ-NotI-Schnittstelle (downstream) restau- riert wird und somit das Plasmid für die nächste Ligation wieder mit Notl linearisiert werden kann.Depending on the promoter version, various areas of the human beta-actin promoter or the SV40 enhancer region, each of which has previously been amplified from genomic DNA, are installed between the enhancer and the polyadenylation site. This installation is carried out according to the principle set forth above, wherein interfaces are so incorporated into the PCR primers that only the 3 Λ -NotI interface (downstream) restorers is riert and thus the plasmid can be linearized again with Notl for the next ligation.
Nach dem gleichen Prinzip werden die erfindungsgemäßen N- oder C-linker eingebaut, die jeweils kom- plett synthetisiert worden sind. Der N-linker versieht erfindungsgemäß das Fusionsprotein mit einer N-terminalen Proteintranslokationsdomäne (PTD) , die 3 Λ-NotI-Schnittstelle bleibt dabei für den Einbau weiterer Sequenzen erhalten. Der C-linker versieht erfindungsgemäß das Fusionsprotein mit einer C- terminalen PTD, wobei die 5 -NotI-Schnittstelle erhalten bleibt.According to the same principle, the N- or C-linkers according to the invention are installed, each of which has been completely synthesized. The N-linker according to the invention provides the fusion protein with a N-terminal Proteintranslokationsdomäne (PTD), the 3 Λ -NotI interface is preserved for installation of further sequences. According to the invention, the C-linker provides the fusion protein with a C-terminal PTD, the 5 -NotI interface being retained.
Herstellung von pCURE2Nbasic-lacZ und pCURE2Cbasic- lacZ :Production of pCURE2Nbasic-lacZ and pCURE2Cbasic-lacZ:
Die lacZ-Kassette wurde für pCURE2Nbasic-lacZ aus pCURE-lacZ (Beispiel 2) mit Restriktionsenzymen isoliert beziehungsweise für pCURE2Nbasic-lacZ aus pCURE-lacZ (Beispiel 2) PCR-amplifiziert .The lacZ cassette was isolated for pCURE2Nbasic-lacZ from pCURE-lacZ (Example 2) with restriction enzymes or for PCR for pCURE2Nbasic-lacZ from pCURE-lacZ (Example 2).
Beispiel 5: Intrahepatische Applikation von pCU- RE2Nbasic-lacZ in MäusenExample 5: Intrahepatic application of pCU-RE2Nbasic-lacZ in mice
Zwei Tage alte Mäuse (Wildtyp) wurden mit 50 μg des isolierten erfindungsgemäßen Plasmidvektors enthaltend das lacZ-Gen in 50 μl eines 150 mM Phosphat- puffers mit pH 7,0 intrahepatisch injiziert. Nach 7 Tagen wurden die Tiere getötet, die Organe entnommen und nach einer Xgal-Färbung wurden Paraffinschnitte der Lunge und des Gehirns angefertigt. Gleichzeitig wurden von nichtinjizierten gleich al- ten Kontrolltieren ebenfalls Paraffinschnitte von Gehirn und Lunge angefertigt. Die Xgal-Färbung erfolgte gemäß Beispiel 3. Alle Vergrößerungen der Paraffinschnitte sind hundertfach und ohne Gegenfärbung.Two-day-old mice (wild type) were injected intrahepatically with 50 μg of the isolated plasmid vector according to the invention containing the lacZ gene in 50 μl of a 150 mM phosphate buffer with pH 7.0. After 7 days, the animals were sacrificed, the organs removed and, after Xgal staining, paraffin sections of the lungs and brain were made. At the same time, non-injected control animals of the same age were also paraffin sections from Brain and lungs made. The Xgal staining was carried out according to Example 3. All enlargements of the paraffin sections are a hundred times and without counterstaining.
Ergebnisse:Results:
Die Figuren 5A und 5B zeigen in toto gefärbte Gehirnhälften nach Xgal-Inkubation. Figur 5A: Nach Injektion von 50 μg des Plasmidvektors. Figur 5B: nach Injektion von 50 μl Phosphatpuffer (Negativ- kontrolle) .FIGS. 5A and 5B show completely colored brain halves after Xgal incubation. FIG. 5A: After injection of 50 μg of the plasmid vector. Figure 5B: after injection of 50 ul phosphate buffer (negative control).
Zu sehen ist bei den Hirnschnitten rechts der stark angefärbte Plexus choroideus sowie links die angefärbten Neuronen der Hirnrinde. Klar zu erkennen ist, dass in den mit den erfindungsgemäßen Plasmid- vektor behandelten Tieren die Neuronen blau gefärbt sind; dort wurde das lacZ-Gen erfindungsgemäß transformiert und exprimiert.The brain sections show on the right the heavily stained choroid plexus and on the left the stained neurons of the cerebral cortex. It can be clearly seen that in the animals treated with the plasmid vector according to the invention, the neurons are colored blue; there the lacZ gene was transformed and expressed according to the invention.
Die spezifische Transformation und Expression des Marker-Proteins macht deutlich, dass der erfin- dungsgemäße Plasmidvektor zur somatischen Gentherapie von Hirn-Neuronen geeignet ist. Die Blut- Hirnschranke wird dabei - besonders überraschend - von den erfindungsgemäßen Fusionsproteinen überwunden.The specific transformation and expression of the marker protein makes it clear that the plasmid vector according to the invention is suitable for the somatic gene therapy of brain neurons. The blood-brain barrier is - particularly surprisingly - overcome by the fusion proteins according to the invention.
Die Figuren 6A und 6B zeigen die Ergebnisse für die Lunge: Bei den Lungenschnitten ist zentral ein Bronchus mit stark angefärbtem Epithel zu sehen. Aufgrund der ausbleibenden Anfärbung in der Negativ-Kontrolle ist diese Struktur dort nur schwer zu erkennen. Die spezifische Anfärbung des Bronchiale- pithels zeigt, dass das mit dem erfindungsgemäßen Plasmidvektor in das Bronchialepithel transformierte lacZ-Gen exprimiert wird.Figures 6A and 6B show the results for the lungs: In the lung sections, a bronchus with a strongly stained epithelium can be seen centrally. Due to the lack of staining in the negative control, this structure is difficult to see there. The specific staining of the bronchial pithels shows that the lacZ gene transformed into the bronchial epithelium with the plasmid vector according to the invention is expressed.
Die spezifische Anfärbung des Bronchialepithels macht die Verwendung des erfindungsgemäßen Plasmidvektors insbesondere für eine Behandlung der zystischen Fibröse der Lunge (Mukoviszidose) geeignet. The specific staining of the bronchial epithelium makes the use of the plasmid vector according to the invention particularly suitable for treating the cystic fibrosis of the lungs (cystic fibrosis).
Claims
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| DE2001128832 DE10128832A1 (en) | 2001-06-15 | 2001-06-15 | Vector and its use in gene therapy processes |
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| WO2007132481A3 (en) * | 2006-05-12 | 2008-06-26 | Bharat Biotech Int Ltd | Novel thrombolytic molecules and a process therefor |
| US8298816B2 (en) | 2003-12-03 | 2012-10-30 | Chugai Seiyaku Kabushiki Kaisha | Expression systems using mammalian beta-actin promoter |
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| WO2002055684A2 (en) * | 2001-01-09 | 2002-07-18 | Univ Iowa Res Found | Synthetic proteins containing a protein transduction domain |
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| US5804604A (en) * | 1989-12-21 | 1998-09-08 | Biogen, Inc. | Tat-derived transport polypeptides and fusion proteins |
| WO1999029721A1 (en) * | 1997-12-10 | 1999-06-17 | Washington University | Anti-pathogen system and methods of use thereof |
| IL142869A0 (en) * | 1998-11-13 | 2002-03-10 | Cyclacel Ltd | Transport vectors |
-
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| WO2002055684A2 (en) * | 2001-01-09 | 2002-07-18 | Univ Iowa Res Found | Synthetic proteins containing a protein transduction domain |
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| HO A ET AL: "Synthetic protein transduction domains: enhanced transduction potential in vitro and in vivo", CANCER RESEARCH, AMERICAN ASSOCIATION FOR CANCER RESEARCH, BALTIMORE, MD, US, vol. 61, 15 January 2001 (2001-01-15), pages 474 - 477, XP002179150, ISSN: 0008-5472 * |
| KWON H Y ET AL: "Transduction of Cu,Zn-superoxide dismutase mediated by an HIV-1 Tat protein basic domain into mammalian cells", FEBS LETTERS, ELSEVIER SCIENCE PUBLISHERS, AMSTERDAM, NL, vol. 485, no. 2-3, 24 November 2000 (2000-11-24), pages 163 - 167, XP004337789, ISSN: 0014-5793 * |
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Cited By (5)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US8298816B2 (en) | 2003-12-03 | 2012-10-30 | Chugai Seiyaku Kabushiki Kaisha | Expression systems using mammalian beta-actin promoter |
| WO2007132481A3 (en) * | 2006-05-12 | 2008-06-26 | Bharat Biotech Int Ltd | Novel thrombolytic molecules and a process therefor |
| GB2451044A (en) * | 2006-05-12 | 2009-01-14 | Bharat Biotech Int Ltd | Novel thrombolytic molecules and a process therefor |
| JP2009536821A (en) * | 2006-05-12 | 2009-10-22 | バハラ バイオテック インターナショナル リミテッド | Novel thrombolytic molecules and methods for their production |
| GB2451044B (en) * | 2006-05-12 | 2010-06-16 | Bharat Biotech Int Ltd | Novel thrombolytic molecules and a process therefore |
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