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WO2002033590A8 - A protein interaction extraction system - Google Patents

A protein interaction extraction system

Info

Publication number
WO2002033590A8
WO2002033590A8 PCT/SG2001/000217 SG0100217W WO0233590A8 WO 2002033590 A8 WO2002033590 A8 WO 2002033590A8 SG 0100217 W SG0100217 W SG 0100217W WO 0233590 A8 WO0233590 A8 WO 0233590A8
Authority
WO
WIPO (PCT)
Prior art keywords
protein interaction
online
extraction system
information
abstracts
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/SG2001/000217
Other languages
French (fr)
Other versions
WO2002033590A1 (en
Inventor
See Kiong Ng
Lim Soon Wong
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
National University of Singapore
Original Assignee
National University of Singapore
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by National University of Singapore filed Critical National University of Singapore
Priority to AU2002211194A priority Critical patent/AU2002211194A1/en
Priority to EP01979208A priority patent/EP1327208A1/en
Publication of WO2002033590A1 publication Critical patent/WO2002033590A1/en
Publication of WO2002033590A8 publication Critical patent/WO2002033590A8/en
Anticipated expiration legal-status Critical
Ceased legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/30—Information retrieval; Database structures therefor; File system structures therefor of unstructured textual data
    • G06F16/33—Querying
    • G06F16/338—Presentation of query results
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Databases & Information Systems (AREA)
  • Molecular Biology (AREA)
  • Bioethics (AREA)
  • Physiology (AREA)
  • Computational Linguistics (AREA)
  • Data Mining & Analysis (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Investigating Or Analysing Biological Materials (AREA)

Abstract

The Protein Interaction Extraction System (PIES) is a means for automatic pathway discovery from online text abstracts. It combine technologies that (a) retrieve abstracts from online sources, (b) extract relevant protein interaction information from free texts, (c) present the extracted information graphically and intuitively, and optionally (d) allow (possibly customised) queries to be attached and launched from the graphical interface. It can further support sophisticated manipulations of the extracted pathways. It can also be set to periodically/routinely scan online scientific literature for automatic discovery of new protein interactions, giving modern scientists the necessary competitive edge in managing the information explosion in this electronic age.
PCT/SG2001/000217 2000-10-18 2001-10-18 A protein interaction extraction system Ceased WO2002033590A1 (en)

Priority Applications (2)

Application Number Priority Date Filing Date Title
AU2002211194A AU2002211194A1 (en) 2000-10-18 2001-10-18 A protein interaction extraction system
EP01979208A EP1327208A1 (en) 2000-10-18 2001-10-18 A protein interaction extraction system

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US69073800A 2000-10-18 2000-10-18
US09/690,738 2000-10-18

Publications (2)

Publication Number Publication Date
WO2002033590A1 WO2002033590A1 (en) 2002-04-25
WO2002033590A8 true WO2002033590A8 (en) 2002-07-18

Family

ID=24773741

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/SG2001/000217 Ceased WO2002033590A1 (en) 2000-10-18 2001-10-18 A protein interaction extraction system

Country Status (3)

Country Link
EP (1) EP1327208A1 (en)
AU (1) AU2002211194A1 (en)
WO (1) WO2002033590A1 (en)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JPWO2005096207A1 (en) * 2004-03-30 2008-02-21 茂男 井原 Document information processing system

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2363020A1 (en) * 1999-02-19 2000-08-24 Jian Wang Method and system for dynamic storage retrieval and analysis of experimental data with determined relationships

Also Published As

Publication number Publication date
EP1327208A1 (en) 2003-07-16
WO2002033590A1 (en) 2002-04-25
AU2002211194A1 (en) 2002-04-29

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