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WO2001039098A8 - System and method for searching a combinatorial space - Google Patents

System and method for searching a combinatorial space

Info

Publication number
WO2001039098A8
WO2001039098A8 PCT/IL2000/000779 IL0000779W WO0139098A8 WO 2001039098 A8 WO2001039098 A8 WO 2001039098A8 IL 0000779 W IL0000779 W IL 0000779W WO 0139098 A8 WO0139098 A8 WO 0139098A8
Authority
WO
WIPO (PCT)
Prior art keywords
combinations
searching
search
elements
combinatorial
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Ceased
Application number
PCT/IL2000/000779
Other languages
French (fr)
Other versions
WO2001039098A2 (en
WO2001039098A3 (en
Inventor
Amiram Goldblum
Meir Glick
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Yissum Research Development Co of Hebrew University of Jerusalem
Original Assignee
Yissum Research Development Co of Hebrew University of Jerusalem
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Yissum Research Development Co of Hebrew University of Jerusalem filed Critical Yissum Research Development Co of Hebrew University of Jerusalem
Priority to JP2001540691A priority Critical patent/JP2003524831A/en
Priority to CA002391987A priority patent/CA2391987A1/en
Priority to EP00977840A priority patent/EP1266337A2/en
Priority to AU15469/01A priority patent/AU780941B2/en
Priority to IL14961200A priority patent/IL149612A0/en
Publication of WO2001039098A2 publication Critical patent/WO2001039098A2/en
Anticipated expiration legal-status Critical
Publication of WO2001039098A3 publication Critical patent/WO2001039098A3/en
Publication of WO2001039098A8 publication Critical patent/WO2001039098A8/en
Ceased legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16C—COMPUTATIONAL CHEMISTRY; CHEMOINFORMATICS; COMPUTATIONAL MATERIALS SCIENCE
    • G16C20/00—Chemoinformatics, i.e. ICT specially adapted for the handling of physicochemical or structural data of chemical particles, elements, compounds or mixtures
    • G16C20/60—In silico combinatorial chemistry
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment
    • G16B15/20—Protein or domain folding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B35/00—ICT specially adapted for in silico combinatorial libraries of nucleic acids, proteins or peptides
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Medical Informatics (AREA)
  • Biophysics (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Biochemistry (AREA)
  • Library & Information Science (AREA)
  • Molecular Biology (AREA)
  • Medicinal Chemistry (AREA)
  • Computing Systems (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Heterocyclic Carbon Compounds Containing A Hetero Ring Having Oxygen Or Sulfur (AREA)
  • Complex Calculations (AREA)

Abstract

A system and method for searching through combinatorial space, without a combinatorial explosion. The search is performed for various combinations of basic elements, according to at least one desired property of the combination, which is translatable into a quantitative measurement of the success of the search. Since the number of variables and hence the number of combinations may be very large, preferably samples of combinations are examined. Those elements of the combinations which have consistent maximization and/or promotion of the quantitative measurement are then kept, while the other elements are dropped. This process is then repeated until some minimum number of combinations is found, which could then optionally be further evaluated according to a similar parameter and/or some other parameter or characteristic.
PCT/IL2000/000779 1999-06-06 2000-11-22 System and method for searching a combinatorial space Ceased WO2001039098A2 (en)

Priority Applications (5)

Application Number Priority Date Filing Date Title
JP2001540691A JP2003524831A (en) 1999-11-22 2000-11-22 System and method for exploring combinatorial space
CA002391987A CA2391987A1 (en) 1999-11-22 2000-11-22 System and method for searching a combinatorial space
EP00977840A EP1266337A2 (en) 1999-11-22 2000-11-22 System and method for searching a combinatorial space
AU15469/01A AU780941B2 (en) 1999-11-22 2000-11-22 System and method for searching a combinatorial space
IL14961200A IL149612A0 (en) 1999-06-06 2000-11-22 System and method for searching a combinatorial space

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
US16674499P 1999-11-22 1999-11-22
US60/166,744 1999-11-22
US20980600P 2000-06-07 2000-06-07
US60/209,806 2000-06-07

Publications (3)

Publication Number Publication Date
WO2001039098A2 WO2001039098A2 (en) 2001-05-31
WO2001039098A3 WO2001039098A3 (en) 2002-09-12
WO2001039098A8 true WO2001039098A8 (en) 2004-04-29

Family

ID=26862535

Family Applications (1)

Application Number Title Priority Date Filing Date
PCT/IL2000/000779 Ceased WO2001039098A2 (en) 1999-06-06 2000-11-22 System and method for searching a combinatorial space

Country Status (5)

Country Link
EP (1) EP1266337A2 (en)
JP (1) JP2003524831A (en)
AU (1) AU780941B2 (en)
CA (1) CA2391987A1 (en)
WO (1) WO2001039098A2 (en)

Families Citing this family (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7315786B2 (en) 1998-10-16 2008-01-01 Xencor Protein design automation for protein libraries
US20020048772A1 (en) 2000-02-10 2002-04-25 Dahiyat Bassil I. Protein design automation for protein libraries
EP1482434A3 (en) * 2001-08-10 2006-07-26 Xencor, Inc. Protein design automation for protein libraries
US7451917B2 (en) 2002-01-11 2008-11-18 Hand Held Products, Inc. Transaction terminal comprising imaging module
WO2004013324A1 (en) * 2002-08-01 2004-02-12 Mochida Pharmaceutical Co., Ltd. Novel crystalline tryptase and utilization thereof
TWI413020B (en) * 2008-12-31 2013-10-21 Ind Tech Res Inst Global minimum value search method and system
JP5691575B2 (en) 2011-02-03 2015-04-01 富士通株式会社 Failure analysis program, failure analysis apparatus, and failure analysis method
US10482991B2 (en) 2012-08-17 2019-11-19 Zymeworks Inc. Systems and methods for sampling and analysis of polymer conformational dynamics
AU2014212432B2 (en) * 2013-01-31 2019-09-19 Codexis, Inc. Methods, systems, and software for identifying bio-molecules using models of multiplicative form
JP7547799B2 (en) * 2020-06-05 2024-09-10 富士通株式会社 Structure search method, structure search device, structure search program, and interaction potential specifying method
CN112649802B (en) * 2020-12-01 2022-03-22 中国人民解放军海军航空大学 Tracking method before weak and small multi-target detection of high-resolution sensor
JP2022103481A (en) 2020-12-28 2022-07-08 富士通株式会社 Stable structure search method of cyclic peptide, stable structure search program of cyclic peptide, and stable structure search apparatus of cyclic peptide
JP2023047726A (en) * 2021-09-27 2023-04-06 富士通株式会社 Initial structure generation device, initial structure generation method and initial structure generation program
WO2025059720A1 (en) * 2023-09-21 2025-03-27 Burzin Bhavnagri System and method for creating lead compounds, and compositions thereof

Family Cites Families (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2002510966A (en) * 1997-04-11 2002-04-09 カリフォルニア・インスティテュート・オブ・テクノロジー Apparatus and method for automatic protein design

Also Published As

Publication number Publication date
WO2001039098A2 (en) 2001-05-31
CA2391987A1 (en) 2001-05-31
AU1546901A (en) 2001-06-04
WO2001039098A3 (en) 2002-09-12
JP2003524831A (en) 2003-08-19
EP1266337A2 (en) 2002-12-18
AU780941B2 (en) 2005-04-28

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