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WO2001029205A2 - Method for genetic manipulation - Google Patents

Method for genetic manipulation Download PDF

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Publication number
WO2001029205A2
WO2001029205A2 PCT/IB2000/001622 IB0001622W WO0129205A2 WO 2001029205 A2 WO2001029205 A2 WO 2001029205A2 IB 0001622 W IB0001622 W IB 0001622W WO 0129205 A2 WO0129205 A2 WO 0129205A2
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minos
transposon
transposase
mrna
injected
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WO2001029205A3 (en
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Charalambos Savakis
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Minos Biosystems Ltd
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Minos Biosystems Ltd
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Priority claimed from GBGB9924721.5A external-priority patent/GB9924721D0/en
Priority claimed from GB0016068A external-priority patent/GB0016068D0/en
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Priority to AU12923/01A priority Critical patent/AU1292301A/en
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    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01KANIMAL HUSBANDRY; AVICULTURE; APICULTURE; PISCICULTURE; FISHING; REARING OR BREEDING ANIMALS, NOT OTHERWISE PROVIDED FOR; NEW BREEDS OF ANIMALS
    • A01K67/00Rearing or breeding animals, not otherwise provided for; New or modified breeds of animals
    • A01K67/60New or modified breeds of invertebrates
    • A01K67/61Genetically modified invertebrates, e.g. transgenic or polyploid
    • A01K67/65Genetically modified arthropods
    • A01K67/68Genetically modified insects
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/87Introduction of foreign genetic material using processes not otherwise provided for, e.g. co-transformation
    • C12N15/90Stable introduction of foreign DNA into chromosome
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/14Hydrolases (3)
    • C12N9/16Hydrolases (3) acting on ester bonds (3.1)
    • C12N9/22Ribonucleases [RNase]; Deoxyribonucleases [DNase]

Definitions

  • the present invention relates to a method for the transfer of genetic information in an organism using transposons
  • the method according to the invention comprises the provision of a transposase activity, to catalyse transposon mobilisation, in the form of a ⁇ bonucleic acid encoding the transposase
  • Minos a member of the Tc1 family of elements, was isolated from D. hydei and is absent from both D. melanogaster (14) and C. capitata (Unpublished data). Minos has been used for the germ line transformation of D. melanogaster and C. capitata (15-16) and using transient mobilisation assays it has also been shown to be active in embryos of D melanogaster, Aedes aegypti, Anopheles stephensi and Bombyx mori and in cell lines of D. melanogaster, Aedes aegypti, Anopheles gambiae and Spodoptera frugiperda (17- 19).
  • transposable element mediated transformation is by co- injecting into pre-blastoderm embryos a mixture of two plasmids: one expressing transposase (Helper) but unable to transpose and one carrying the gene of interest flanked by the inverted terminal repeats of the element (Donor) Transformed progeny of injected animals is detected by the expression of dominant marker genes Such methods however, provide very low efficiencies of transformation
  • TcMmanner elements have a number of advantages over viral and non-virai gene delivery systems, such as the stable, single-copy integration of transgenes into chromosomes, less strict maximal insert sizes, precise regulation of transposition by controlling the expression of transposase, increased accessibility of diverse tissue cells (20)
  • Re-mobilisation of transgenes by the introduction of functional transposase (21-22) and germ line transformation with transposon vectors support powerful methodologies in molecular genetic research, such as analysis of genes either through loss-of-function (23-24) or gain-of-function (25-26) insertional mutagenesis, gene cloning by transposon tagging (27) and enhancer trapping (28-29)
  • Random integration of transgenes into chromosomes is a clear advantage for these applications, if the frequency of transposition is not a limiting factor
  • transposase activity may be provided on a DNA vector, as mentioned above, transposon mobilisation by this technique is not demonstrated Instead, transposase protein is produced in foreign hosts, purified and administered directly to cells harbouring the transposons
  • transposase is not easily isolatable from natural sources, and recombinantly-de ⁇ ved transposase is shown to give a low efficiency of transformation
  • the invention provides the transposase activity in the form of RNA encoding the transposase, coadmimstered to the cell with the transposon
  • Minos mRNA in vitro synthesised Minos mRNA is used as a source of Minos transposase which offers the advantage of transient increased levels of transposase and eliminates the danger of random integration of the helper plasmid into the genome through non-homologous recombination
  • the transposase encoded by Minos mRNA can mobilise Minos transposons from plasmids co-injected in Drosophila embryos Moreover, high frequencies of germ line transformation and re-mobilisation of a resident Minos transgene are achieved by this method
  • a method for genetically modifying a cell by transposon mobilisation comprising the steps of a) delivering to the cell a nucleic acid comprising a transposon of the TcMmanner class, b) delivering to the cell a ribonucleic acid encoding a cognate transposase for said transposon, and c) causing the ribonucleic acid to be translated to produce the cognate transposase within the cell
  • a method for mobilising a transposon resident in a host cell genome comprising the steps of a) delivering to the cell a ribonucleic acid encoding a cognate transposase for said transposon, and b) causing the ribonucleic acid to be translated to produce the cognate transposase within the cell, thus mobilising the resident transposon
  • delivery of the nucleic acids may be accomplished by any available technique, including transformation/transfection, delivery by viral or non-viral vectors and microinjection Each of these techniques is known in the art Ribonucleic acids, in particular, may be delivered by microinjection or by viral transduction, particularly by RNA viruses in which the viral genome comprises the ribonucleic acid encoding the transposase.
  • a nucleic acid may be any nucleic acid, including DNA and RNA, as well as synthetic nucleic acid homologues such as backbone-modified nucleic acids including methylphosphonates, phosphorothioates and phosphorodithioates, where both of the non-bridging oxygens are substituted with sulphur, phosphoroamidites, alkyl phosphot ⁇ esters and boranophosphates
  • backbone-modified nucleic acids including methylphosphonates, phosphorothioates and phosphorodithioates, where both of the non-bridging oxygens are substituted with sulphur, phosphoroamidites, alkyl phosphot ⁇ esters and boranophosphates
  • Achiral phosphate derivatives include 3'-0'-5'-S-phosphoroth ⁇ oate, 3'-S-5'-0-phosphoroth ⁇ oate, 3'-CH2-5'-0-phosphonate and 3'-NH-5'-0-phosphoroam ⁇ date
  • ⁇ -anomer of deoxynbose may be used, where the base is inverted with respect to the natural ⁇ -anomer.
  • the 2'-OH of the ribose sugar may be altered to form 2'-0-methyl or 2'-0-allyl sugars, which provides resistance to degradation without comprising affinity
  • Modification of the heterocyclic bases must maintain proper base pairing.
  • Some useful substitutions include deoxyuridme for deoxythymidine, 5-methyl-2'-deoxycytid ⁇ ne and 5-bromo-2'-deoxycytidine for deoxycytidine.
  • 5-propynyl-2'-deoxyuridine and 5-propynyl-2'-deoxycytidine have been shown to increase affinity and biological activity when substituted for deoxythymidine and deoxycytidine, respectively.
  • a ribonucleic acid as referred to herein, may be natural or modified RNA
  • the RNA may comprise one or more of the modifications identified above.
  • Translation of the ribonucleic acid to produce the transposase is preferably effected by endogenous cellular translation machinery. This may be under the control of natural cellular factors and sequences, and/or, particularly where the RNA is delivered by viral transduction, of viral sequences and factors.
  • the cell may be any suitable cell type, including plant, insect and mammalian cells.
  • the cells may be part of an organism, in primary culture, or established cell lines. Insect cells are preferred.
  • the method of the present invention may be used to create transgenic organisms, such as transgenic insects, mammals or plants, by delivering to the oocyte a nucleic acid comprising a transposon and a ribonucleic acid encoding the transposase activity.
  • the transposon is selected from the group consisting of Minos, manner, Hermes and piggyBac.
  • the transposon is Minos
  • Each transposon is advantageously employed with its natural cognate transposase, although the use of modified and/or improved transposases is envisaged
  • the transposon preferably comprises a nucleic acid sequence encoding a heterologous polypeptide.
  • This sequence will be integrated, together with the transposon, into the genome of the cell on transposon integration. Moreover, it will be excised, together with the transposon, when the latter excises on remobilisation.
  • the heterologous polypeptide is a selectable marker. This allows cells having integrated transposons to be identified and the site of integration to be accurately mapped
  • Figure 1 A) Structure of the C58 insertion. B) Mating schemes for the detection of excision and transposition of the stable Minos insertion (black arrowhead) in the C58 strain. For more information see Materials & Methods.
  • FIG. 1 /nos-transposon excision from a donor plasmid mediated by Minos- transposase mRNA. Excision scheme and PCR results from medfly embryos. Lane 1 , No DNA (negative control of PCR), Lane 2; Non-injected embryos, Lane 3; injected with iW/ ⁇ os-mRNA/donor mix embryos (pool No I), Lane 4; injected with M/ ⁇ os-mRNA/donor mix embryos (pool No II), Lane 5; Excision in S2 cells (positive control of the PCR), Lane 6; injected with donor plasmid (pool V), Lane 7; injected with donor plasmid (pool VI).
  • FIG. 3 (A) MihsCcw transposon. Medfly white cDNA and Hsp70 (promoter and terminator) sequences, are shown in white. Black arrows indicate the EcoRI restriction sites. Black bars above the map indicate the Minos sequences that were used as probe for the analysis of transformants. (B) Southern blot analysis of Ceratitis capitata transformants.
  • Transformation efficiency expressed as percentage of individuals giving transformed progeny is a crucial parameter in designing strategies for tra ⁇ sgenesis, especially for species that are difficult to breed
  • Mobile element mediated transgenesis is usually based on two components a transposon and the homologous or cognate transposase
  • transposases of Tc7, Mos1 and Himarl can also catalyse transposition in vitro (12-14)
  • transpositional activity may not be proportional to the amount of transposase present, high concentrations of transposase may inhibit transposition in vitro (33) and in vivo (15 our unpublished results)
  • This work shows that the use of in vitro synthesised Minos transposase mRNA can result in high transformation efficiencies in both species that were tested, D melanogaster, and the medfly C capitata Until now,
  • a transformation frequency of 3 2% was accomplished in Drosophila melanogaster by injecting pMiwl , a non-autonomous Minos transposon marked with a wild-type version of the white gene, to pre-blastoderm embryos carrying a chromosomal source of transposase (15) Similar transformation frequencies (ca 1-6%) have been reported for M/nos-med ⁇ ated transformation of Drosophila, using the same transposon combined with a transposase expressing (helper) plasmid (15) The efficiency of transformation in these cases depends on a) the levels of transposase in germ line nuclei and b) the transformation procedure itself Transposase levels may vary according to the promoter that drives its expression and, in the latter case, the amount of plasmid injected Gradual improvements of technique have resulted in increased transformation efficiencies In our hands, Minos-mediated transformation efficiency of up to 10% has been achieved in Drosophila (unpublished data), using various transposons and the helper plasmid
  • Transformation rates of different insect species may vary widely, depending on the species and the transformation system. For example, transformation rates of 1 % and 3- 5% have been reported for Medfly with Minos and with piggyBac, respectively (16,9) of 4% and 8% for the mosquito Aedes aegypti with mariner and Hermes respectively (4,6), and 2% for the silkworm Bombyx mori with piggyBac (10).
  • Integration rates expressed as the frequency of appearance of different phenotypically detectable events, are an additional criterion of efficiency of transformation. Integration rates may actually be more informative than transformation rates, because they indicate the number of different independent lines that can be obtained from a given transformation experiment. Integration rates in the Medfly using Minos transposase mRNA are approximately 18% for GO males and 13% for females. Southern analysis clearly indicated that the different eye phenotypes present among the G1 progeny from the same cage represent independent integration events.
  • a rapid assay was used to test activity of the Minos transposase mRNA in Medfly embryos
  • the assay is based on the observation that, as in other Tc1 /manner mobile elements, the parent chromatids are repaired after excision of Minos transposons, resulting in characteristic footprints at the site of the insertion, these events can be detected by PCR and characterised by sequencing (22) Excision/repair events can also be reproduced in plasmids that are introduced in insect cells and embryos expressing Minos transposase (17, 18, 19).
  • this assay can also be used for testing transposase activity in Medfly embryos, after co-injection with a donor plasmid and transposase mRNA.
  • Such assays can be invaluable for assessing and optimising new sources of transposase or for testing established transposon systems in new host species, before embarking into time-consuming transformation experiments.
  • Minos transposon insertions in the genome in the absence of transposase suggests that there is no interaction between the Minos and other related mobile elements of the Tel/mariner family that are present in the D melanogaster and the Medfly genomes (15, our unpublished results).
  • insertions can be mobilised upon expression of Minos transposase from a chromosomal position (16, 22)
  • a Drosophila transformant C58
  • This integration involves two copies of a white- marked transposon flanking a copy of the plasmid vector.
  • Active Minos transposase induces mobilisation of either one or both transposons. Loss of both transposons in the germ line of C58 males was detected as exceptional daughters that had reverted to the w phenotype (15.9%).
  • Transposition of the Miw1 transposon from the X into an autosome was detected in the germ line of C58 males as non-white sons among their progeny (31 ,8%). Approximately 38% of male GO's, injected with 100ug/mL, gave at least one coloured-eyed female progeny with eye phenotype different than the heterozygous C58 phenotype.
  • Example 1 Introduction of Minos into the D. melanogaster genome.
  • a /W/nos-based transposon in combination with a Minos transposase mRNA was introduced into preblastoderm Drosophila embryos by a microinjection procedure Approximately 800 embryos were injected and the 154 adults (GO generation) resulting from injected embryos were collected and backcrossed to w flies (Summarised in Table 1) Single male GOs were crossed to 4 w females whereas GO females were crossed with 3 w males in groups of two except from 6 females that were used in single crosses At least 6 of these GO adults (2 males and at least 4 females) were sterile, the 38,452 progeny of the rest were screened for the presence of non-white phenotypes.
  • Example 2 Mobilisation of a Minos transposon using Minos transposase mRNA
  • Minos transposase expressed in early Drosophila embryos from injected Minos mRNA can mobilise a Minos transposon from Drosophila chromosomes
  • insertion of M ⁇ w1 on the X chromosome This insertion consists of two M ⁇ w1 transposons arranged in tandem and separated by a full copy of the plasmid vector (15)
  • Fig 1A Two concentrations of mRNA (50 ⁇ g/mL and 100 ⁇ g/mL) were tested for their ability to induce a) excision of both transposons and b) re-insertion of the transposon in an autosome
  • the Minos mRNA was introduced into D melanogaster preblastoderm embryos by microinjections Male GO flies were backcrossed to w flies and G1 progeny was screened for exceptional eye phenotypes Transposon loss in the germ line of the injected (GO) males was detected as female progeny that had reverted to the w phenotype Transpositions to an autosome were detected as exceptional non-white eyed sons (Fig 1B) The non-white female progeny of the GO males showed considerable variation in eye colour For example, of the 44 fertile males injected with 100 ⁇ g/mL mRNA 17 (38 6%) gave at least one female progeny with either weaker or stronger eye colour than the typical heterozyg
  • Example 3 A rapid PCR assay for Minos transposase mRNA activity.
  • a PCR-based assay was used to detect mRNA-encoded transposase activity in medfly embryos The assay is based on the observation that after Minos excision the chromatid (or donor plasmid) can be re-ligated in the host cell (17, 22) Appropriate DNA primers were used (see Materials and Methods) which are expected to generate a 211 bp fragment after precise excision of the transposon As shown in Figure 2 under the PCR conditions that were used the full 2 2 Kb transposon sequence was recovered as well Non-injected Medfly embryos did not give any of these bands The full-length product was amplified from embryos that were injected with donor plasmids but no Minos transposase mRNA The embryos that were injected with the mRNA/donor mix gave the 211 bp excision band along with the full length transposon sequence
  • Example 4 Introduction of Minos into the C. capitata genome.
  • a M/ ⁇ os-based transposon (pMihsCcW) in combination with Minos transposase mRNA was microinjected into approximately 2400 medfly preblastoderm embryos 382 adults (GO generation) were collected and backcrossed to w Medflies Groups of 10 GO males were crossed to 20 w females whereas groups of 20 GO females were crossed to 10 w males (Summarised in Table 4)
  • 67,966 G1 flies were screened for the presence of a non-white phenotype (Table 5)
  • a total of 665 flies with coloured eyes were recovered from 22 out of the 29 cages
  • the frequency of transformants among the G1 flies varied between 7 437% and 0 055%, with only 3 of the cages giving one transformed fly Of the remaining 19 cages, 16 gave transformed progeny that varied in phenotype Phenotypic variations included a
  • D3F:16 has only one female GO

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Abstract

Capped RNA corresponding to the spliced transcript of the Minos transposable element has been synthesised in vitro and shown to be active as a source of transposase for Minos transposon mobilisation. When co-injected into Drosophila and Medfly embryos, Minos mRNA can mobilise homologous transposons from plasmids into germline chromosomes. Injected mRNA is superior to injected plasmids expressing the transposase as a source of the enzyme, resulting in several-fold increases in transformation efficiencies. In a rapid test for mRNA activity, Minos mRNA has been shown to catalyse excision of a Minos transposon from plasmid DNA in Medfly embryos. High frequency mobilisation of a Minos transposon from the X chromosome into autosomes has also been demonstrated after injections of Minos transposase mRNA into pre-blastoderm Drosophila embryos. The rates of transposition (approximately 30 %) suggest that this is a powerful system for genetic manipulation.

Description

METHOD FOR GENETIC MANIPULATION
The present invention relates to a method for the transfer of genetic information in an organism using transposons In particular, the method according to the invention comprises the provision of a transposase activity, to catalyse transposon mobilisation, in the form of a πbonucleic acid encoding the transposase
The introduction of exogenous DNA into the genome is a critical step for the study of molecular genetics of multiple insect species. Until recently, the absence of convenient and effective methodology applied to insects other than Drosophila has been a serious drawback in such studies. In Drosophila melanogaster and closely related species, the P-element has been used widely to mediate germ line transformation (1) Despite its efficiency in Drosophila, the P transformation system does not function in non-Drosophila species. Transgenic technology based on mobile elements other than P is currently applied to diverse insect species of agricultural or medical importance Over the past few years several Type II transposable elements have been used for germline transformation in species other than their natural hosts, such as Minos (see below), mariner in D melanogaster, D. viπlis and Aedes aegypti (2-4), Hermes in D. melanogaster and Ae. aegypti (5-6) Hobo in D viήlis (7); piggyBac in D. melanogaster, C. capitata and B mbyx mori (8-10). Moreover, purified transposase from the Tc1, Mos1, and Himarf members of the Td/mariner superfamily, can catalyse transposition of the homologous transposons in vitro (11-13). These results indicate that apart from the transposase, the transposition of these elements may not require other species-specific factors employed by the host cells. It is generally believed that these elements do not face severe host restrictions.
Minos, a member of the Tc1 family of elements, was isolated from D. hydei and is absent from both D. melanogaster (14) and C. capitata (Unpublished data). Minos has been used for the germ line transformation of D. melanogaster and C. capitata (15-16) and using transient mobilisation assays it has also been shown to be active in embryos of D melanogaster, Aedes aegypti, Anopheles stephensi and Bombyx mori and in cell lines of D. melanogaster, Aedes aegypti, Anopheles gambiae and Spodoptera frugiperda (17- 19).
The standard methodology for transposable element mediated transformation is by co- injecting into pre-blastoderm embryos a mixture of two plasmids: one expressing transposase (Helper) but unable to transpose and one carrying the gene of interest flanked by the inverted terminal repeats of the element (Donor) Transformed progeny of injected animals is detected by the expression of dominant marker genes Such methods however, provide very low efficiencies of transformation
For species in which DNA introduction into embryos is easy, low transformation frequencies would not be a major practical problem Nevertheless, in those cases that the introduction is not trivial, either due to small numbers of available eggs or to other factors high transformation frequencies may be critical for success
TcMmanner elements have a number of advantages over viral and non-virai gene delivery systems, such as the stable, single-copy integration of transgenes into chromosomes, less strict maximal insert sizes, precise regulation of transposition by controlling the expression of transposase, increased accessibility of diverse tissue cells (20) Re-mobilisation of transgenes by the introduction of functional transposase (21-22) and germ line transformation with transposon vectors support powerful methodologies in molecular genetic research, such as analysis of genes either through loss-of-function (23-24) or gain-of-function (25-26) insertional mutagenesis, gene cloning by transposon tagging (27) and enhancer trapping (28-29) Random integration of transgenes into chromosomes is a clear advantage for these applications, if the frequency of transposition is not a limiting factor
There remains a need, however, for a transposon-mediated transformation system in which the efficiency of transformation is increased In WO 99/07871 a transformation system based on TcMmanner elements has been proposed Although the authors suggest that a transposase activity may be provided on a DNA vector, as mentioned above, transposon mobilisation by this technique is not demonstrated Instead, transposase protein is produced in foreign hosts, purified and administered directly to cells harbouring the transposons Such a technique has evident disadvantages, since transposase is not easily isolatable from natural sources, and recombinantly-deπved transposase is shown to give a low efficiency of transformation
Moreover, there remains a need for a method which can efficiently remobilise resident transposons in a cell The methods described in WO 99/07871 are not demonstrated to be able to successfully remobilise integrated transposons in a cell Summary of the Invention
We have now developed a new traπsposon-mediated transformation method which provides highly efficient mobilisation of transposons of the TcMmanner class in particular Minos The invention provides the transposase activity in the form of RNA encoding the transposase, coadmimstered to the cell with the transposon
In a preferred embodiment of the invention in vitro synthesised Minos mRNA is used as a source of Minos transposase which offers the advantage of transient increased levels of transposase and eliminates the danger of random integration of the helper plasmid into the genome through non-homologous recombination The transposase encoded by Minos mRNA can mobilise Minos transposons from plasmids co-injected in Drosophila embryos Moreover, high frequencies of germ line transformation and re-mobilisation of a resident Minos transgene are achieved by this method
According to a first aspect of the invention, therefore, there is provided a method for genetically modifying a cell by transposon mobilisation, comprising the steps of a) delivering to the cell a nucleic acid comprising a transposon of the TcMmanner class, b) delivering to the cell a ribonucleic acid encoding a cognate transposase for said transposon, and c) causing the ribonucleic acid to be translated to produce the cognate transposase within the cell
According to a second aspect of the invention, there is provided a method for mobilising a transposon resident in a host cell genome, comprising the steps of a) delivering to the cell a ribonucleic acid encoding a cognate transposase for said transposon, and b) causing the ribonucleic acid to be translated to produce the cognate transposase within the cell, thus mobilising the resident transposon
in the context of the present invention, delivery of the nucleic acids may be accomplished by any available technique, including transformation/transfection, delivery by viral or non-viral vectors and microinjection Each of these techniques is known in the art Ribonucleic acids, in particular, may be delivered by microinjection or by viral transduction, particularly by RNA viruses in which the viral genome comprises the ribonucleic acid encoding the transposase.
A nucleic acid, as referred to herein, may be any nucleic acid, including DNA and RNA, as well as synthetic nucleic acid homologues such as backbone-modified nucleic acids including methylphosphonates, phosphorothioates and phosphorodithioates, where both of the non-bridging oxygens are substituted with sulphur, phosphoroamidites, alkyl phosphotπesters and boranophosphates Achiral phosphate derivatives include 3'-0'-5'-S-phosphorothιoate, 3'-S-5'-0-phosphorothιoate, 3'-CH2-5'-0-phosphonate and 3'-NH-5'-0-phosphoroamιdate. Peptide nucleic acids replace the entire phosphodiester backbone with a peptide linkage
Sugar modifications are also used to enhance stability and affinity The α-anomer of deoxynbose may be used, where the base is inverted with respect to the natural β-anomer. The 2'-OH of the ribose sugar may be altered to form 2'-0-methyl or 2'-0-allyl sugars, which provides resistance to degradation without comprising affinity
Modification of the heterocyclic bases must maintain proper base pairing. Some useful substitutions include deoxyuridme for deoxythymidine, 5-methyl-2'-deoxycytidιne and 5-bromo-2'-deoxycytidine for deoxycytidine. 5-propynyl-2'-deoxyuridine and 5-propynyl-2'-deoxycytidine have been shown to increase affinity and biological activity when substituted for deoxythymidine and deoxycytidine, respectively.
A ribonucleic acid, as referred to herein, may be natural or modified RNA Advantageously, the RNA may comprise one or more of the modifications identified above.
Translation of the ribonucleic acid to produce the transposase is preferably effected by endogenous cellular translation machinery. This may be under the control of natural cellular factors and sequences, and/or, particularly where the RNA is delivered by viral transduction, of viral sequences and factors.
The cell may be any suitable cell type, including plant, insect and mammalian cells. The cells may be part of an organism, in primary culture, or established cell lines. Insect cells are preferred. The method of the present invention may be used to create transgenic organisms, such as transgenic insects, mammals or plants, by delivering to the oocyte a nucleic acid comprising a transposon and a ribonucleic acid encoding the transposase activity.
Preferably, the transposon is selected from the group consisting of Minos, manner, Hermes and piggyBac. Advantageously, the transposon is Minos Each transposon is advantageously employed with its natural cognate transposase, although the use of modified and/or improved transposases is envisaged
The transposon preferably comprises a nucleic acid sequence encoding a heterologous polypeptide. This sequence will be integrated, together with the transposon, into the genome of the cell on transposon integration. Moreover, it will be excised, together with the transposon, when the latter excises on remobilisation. In a preferred embodiment, the heterologous polypeptide is a selectable marker. This allows cells having integrated transposons to be identified and the site of integration to be accurately mapped
Brief Description of the Figures
Figure 1. A) Structure of the C58 insertion. B) Mating schemes for the detection of excision and transposition of the stable Minos insertion (black arrowhead) in the C58 strain. For more information see Materials & Methods.
Figure 2. /nos-transposon excision from a donor plasmid mediated by Minos- transposase mRNA. Excision scheme and PCR results from medfly embryos. Lane 1 , No DNA (negative control of PCR), Lane 2; Non-injected embryos, Lane 3; injected with iW/πos-mRNA/donor mix embryos (pool No I), Lane 4; injected with M/πos-mRNA/donor mix embryos (pool No II), Lane 5; Excision in S2 cells (positive control of the PCR), Lane 6; injected with donor plasmid (pool V), Lane 7; injected with donor plasmid (pool VI). Excision results in a PCR product of 211 bp while the 2.2 Kb band results from the amplification of an intact transposon sequence. The band at -1.2 Kb is the result from ectopic priming from the donor plasmid sequences.
Figure 3. (A) MihsCcw transposon. Medfly white cDNA and Hsp70 (promoter and terminator) sequences, are shown in white. Black arrows indicate the EcoRI restriction sites. Black bars above the map indicate the Minos sequences that were used as probe for the analysis of transformants. (B) Southern blot analysis of Ceratitis capitata transformants. DNA from G2 transformed flies and the w recipient strain was digested with EcoR I and hybridized with Minos probe (see Materials & Methods) Brackets indicate G1 flies derived from the same GO cage Small stars mark fainter bands which may correspond to silent segregating insertions (see text) Line marked as 33 2 serves as a positive control and contains DNA from the homonymous transformed line of C capitata (Loukens et al , 1995b)
Detailed Description of the Invention
Transformation efficiency, expressed as percentage of individuals giving transformed progeny is a crucial parameter in designing strategies for traπsgenesis, especially for species that are difficult to breed Mobile element mediated transgenesis is usually based on two components a transposon and the homologous or cognate transposase For mobile elements of the TcMmanner family the presence of these two components during early embryogenesis is considered to be necessary and sufficient for integration of the transposon into host chromosomes, since transposases of Tc7, Mos1 and Himarl can also catalyse transposition in vitro (12-14) However, there is evidence that transpositional activity may not be proportional to the amount of transposase present, high concentrations of transposase may inhibit transposition in vitro (33) and in vivo (15 our unpublished results) This work shows that the use of in vitro synthesised Minos transposase mRNA can result in high transformation efficiencies in both species that were tested, D melanogaster, and the medfly C capitata Until now, two sources of Minos transposase have been employed for transformation of these species A stable chromosomal integration of a transposase-expressing construct in Drosophila, (15) and transposase-expressing plasmids in Drosophila and Ceratitis (16)
A transformation frequency of 3 2% was accomplished in Drosophila melanogaster by injecting pMiwl , a non-autonomous Minos transposon marked with a wild-type version of the white gene, to pre-blastoderm embryos carrying a chromosomal source of transposase (15) Similar transformation frequencies (ca 1-6%) have been reported for M/nos-medιated transformation of Drosophila, using the same transposon combined with a transposase expressing (helper) plasmid (15) The efficiency of transformation in these cases depends on a) the levels of transposase in germ line nuclei and b) the transformation procedure itself Transposase levels may vary according to the promoter that drives its expression and, in the latter case, the amount of plasmid injected Gradual improvements of technique have resulted in increased transformation efficiencies In our hands, Minos-mediated transformation efficiency of up to 10% has been achieved in Drosophila (unpublished data), using various transposons and the helper plasmid that was originally used by Loukeris et al. (15). The introduction of Minos transposase mRNA as a helper in Drosophila boosts transformation rates to 25%. This makes Mπos-based transformation in D. melanogaster comparable in efficiency to P element mediated transformation.
Transformation rates of different insect species may vary widely, depending on the species and the transformation system. For example, transformation rates of 1 % and 3- 5% have been reported for Medfly with Minos and with piggyBac, respectively (16,9) of 4% and 8% for the mosquito Aedes aegypti with mariner and Hermes respectively (4,6), and 2% for the silkworm Bombyx mori with piggyBac (10).
Using Minos mRNA instead of a helper plasmid increased transformation rates of Medfly considerably. GO Medflies are routinely tested in small groups under our laboratory conditions, because single pair mating of Medfly is not efficient, resulting in apparent low fertility. Consequently, our transformation rates represent minimum estimates. In this study, 14 of 20 cages, containing a total of 202 GO male flies, yielded at least one transformed progeny. This gives a lower-estimate transformation rate of approximately 6.9% (14/202). The corresponding rates from cages containing GO females is approximately 4.4% (8 of 9 cages, containing a total of 180 GO females, see Table 5).
Integration rates, expressed as the frequency of appearance of different phenotypically detectable events, are an additional criterion of efficiency of transformation. Integration rates may actually be more informative than transformation rates, because they indicate the number of different independent lines that can be obtained from a given transformation experiment. Integration rates in the Medfly using Minos transposase mRNA are approximately 18% for GO males and 13% for females. Southern analysis clearly indicated that the different eye phenotypes present among the G1 progeny from the same cage represent independent integration events. It is not possible to distinguish which of the independent phenotypes present in a cage represent a) multiple insertion events in the germ line of a single GO or b) progeny from different GO's carrying single insertions, because the GO's were tested in groups. Southern analysis detected double insertions of the transposon in the progeny of 5 of the 12 G1's examined, suggesting that multiple integration events in the germ line of individual GO's are not rare (16,9). It is notable that these "second" insertions behave as "silent" events, i.e. there is no w+ phenotype associated with them. This is consistent with the observation that the white gene is subject to strong position effects (34), which may result in total marker suppression (35) Our observation that out of 17 insertions only 12 were detectable though the eye phenotype, suggests that, in Medfly transformation with the MihsCcw transposon, up to 30% of the insertions may remain undetected Consequently transformation frequencies using the white marker are somewhat underestimated, and higher success rates can be expected with markers that may be less susceptible to position effects, such as the Green Fluorescent Protein (8)
A rapid assay was used to test activity of the Minos transposase mRNA in Medfly embryos The assay is based on the observation that, as in other Tc1 /manner mobile elements, the parent chromatids are repaired after excision of Minos transposons, resulting in characteristic footprints at the site of the insertion, these events can be detected by PCR and characterised by sequencing (22) Excision/repair events can also be reproduced in plasmids that are introduced in insect cells and embryos expressing Minos transposase (17, 18, 19). We have shown that this assay can also be used for testing transposase activity in Medfly embryos, after co-injection with a donor plasmid and transposase mRNA. Such assays can be invaluable for assessing and optimising new sources of transposase or for testing established transposon systems in new host species, before embarking into time-consuming transformation experiments.
The stability of Minos transposon insertions in the genome in the absence of transposase suggests that there is no interaction between the Minos and other related mobile elements of the Tel/mariner family that are present in the D melanogaster and the Medfly genomes (15, our unpublished results). On the other hand, insertions can be mobilised upon expression of Minos transposase from a chromosomal position (16, 22) To determine whether mRNA-encoded Minos transposase expressed in early embryos can mobilise a Minos chromosomal insertion, a Drosophila transformant (C58) was used that carries a Minos integration in the X chromosome. This integration involves two copies of a white- marked transposon flanking a copy of the plasmid vector. Active Minos transposase induces mobilisation of either one or both transposons. Loss of both transposons in the germ line of C58 males was detected as exceptional daughters that had reverted to the w phenotype (15.9%). Transposition of the Miw1 transposon from the X into an autosome was detected in the germ line of C58 males as non-white sons among their progeny (31 ,8%). Approximately 38% of male GO's, injected with 100ug/mL, gave at least one coloured-eyed female progeny with eye phenotype different than the heterozygous C58 phenotype. We consider that some of these females result from excision of one rather than both, of the two copies of the transposon in the C58 insertion This could explain the observation that transposition events detected among G1 sons appear to be approximately twice as many as marker loss events detected among daughters of the same injected C58 males (31 8% vs 15 9%)
Mobilisation of Minos transposons from chromosomal positions has been demonstrated before, using a genomic source of Minos transposase (22) These experiments snowed that the frequencies of excision and transposition depend both on the helper chromosome and the configuration of the donor chromosome The use of an RNA heloer instead of a chromosomal source of transposase not only increases transposition frequencies (almost 3 fold in our system) but greatly simplifies the procedure of transposon remobilization since there is no need for elaborate mating schemes with strains expressing the appropriate levels of transposase This would prove invaluable for mutagenesis screens, gene tagging and enhancer trapping both in Drosophila and in other insect species where the Minos system is active Even in Drosophila where the P- element is routinely used for genetic analysis (23, 24, 28, 39) it is unlikely that a complete sampling of the genome will be achieved using only this element, P-element genomic insertion sites display a wide variation in their receptivity to insertion (40 23 ,41 ) Moreover, in non-Drosophila species of economic or of public health interest where Minos is active and not present in the genome, RNA-induced transposon mobilisation will allow genetic manipulations without the need to establish transgenic strains expressing transposase
Examples
Example 1: Introduction of Minos into the D. melanogaster genome. A /W/nos-based transposon in combination with a Minos transposase mRNA was introduced into preblastoderm Drosophila embryos by a microinjection procedure Approximately 800 embryos were injected and the 154 adults (GO generation) resulting from injected embryos were collected and backcrossed to w flies (Summarised in Table 1) Single male GOs were crossed to 4 w females whereas GO females were crossed with 3 w males in groups of two except from 6 females that were used in single crosses At least 6 of these GO adults (2 males and at least 4 females) were sterile, the 38,452 progeny of the rest were screened for the presence of non-white phenotypes. A total of 691 flies with coloured eyes were recovered from 35 out of 1 14 difrerent crosses In many instances w* progeny from the same cross differed in eye colour Tne eye colour varied from pale yellow to near wild type among different transformants presumably due to position effect depending on the insertion site of Mιw1 transposon (32) The same kind of variegation is typical with P [mini-white] as well as with Minos [mini-white] (15) insertions This partial rescue makes the w marker very useful in detecting and sorting out different insertions Based on these differences G1 transformants were classified into 60 distinct groups according to their eye phenotypes Analysis of the progeny of GO flies (Table2) showed that although the efficiency of transformation of the injected embryos is high (25% for the males and -22% for the females) the actual frequency of G1 transformed progeny does not exceed 1 8% Nineteen out of the 76 fertile GO males gave at least one progeny with w" eye phenotype At least 16 out of the 72 fertile GO females gave vv+ G1 progeny but the number is probably higher because female GOs were backcrossed in groups of two Eleven of the single male GOs gave one event in their germ line, 5 gave two events and 3 gave three events This results in an overall integration rate of ~39,5% In GO males, independent integration events in the germ line of each male GO (Table 1) were screened from the eye phenotype and verified by Southern biots (data not shown) We cannot determine whether the different transformants from the same vial containing female GO's are derived from a single or both GO parents, and therefore an overall integration rate in GO females cannot be determined from our data
Example 2: Mobilisation of a Minos transposon using Minos transposase mRNA
To determine whether Minos transposase expressed in early Drosophila embryos from injected Minos mRNA can mobilise a Minos transposon from Drosophila chromosomes, we used an insertion of Mιw1 on the X chromosome This insertion consists of two Mιw1 transposons arranged in tandem and separated by a full copy of the plasmid vector (15)
(Fig 1A) Two concentrations of mRNA (50 μg/mL and 100 μg/mL) were tested for their ability to induce a) excision of both transposons and b) re-insertion of the transposon in an autosome The Minos mRNA was introduced into D melanogaster preblastoderm embryos by microinjections Male GO flies were backcrossed to w flies and G1 progeny was screened for exceptional eye phenotypes Transposon loss in the germ line of the injected (GO) males was detected as female progeny that had reverted to the w phenotype Transpositions to an autosome were detected as exceptional non-white eyed sons (Fig 1B) The non-white female progeny of the GO males showed considerable variation in eye colour For example, of the 44 fertile males injected with 100 μg/mL mRNA 17 (38 6%) gave at least one female progeny with either weaker or stronger eye colour than the typical heterozygous C58 phenotype Weaker eye colour phenotypes presumably represent partial excision (i e excision of one of the two transposons present in C58) stronger phenotypes may represent transpositions to new sites Because of the difficulty to detect and analyse such complex events only complete loss of the marker (white-eyed females) and transpositions to autosomes (non-white males) were scored in the progeny of injected males
The results of this analysis are shown in Table 3 Approximately 16% of males injected with 100 μg/mL mRNA had at least one excision event (w phenotype) among their female progeny Excision frequencies dropped to 6% in males injected with 50ug/mL mRNA Approximately 31 8% (14 out of 44) of males injected with 100 ug/mL mRNA gave at least one exceptional w* son among their progeny The frequency of germ line transposition dropped to 6% in males injected with 50 ug/mL Non-white eye phenotypes of the exceptional males varied considerably, presumably due to strong position effects In two cases, w* sons of the same GO male exhibited markedly different phenotypes indicating independent transposition events If these cases are considered the overall frequency of transposition increases to 34% (for 100 μg/mL GO males)
Example 3: A rapid PCR assay for Minos transposase mRNA activity.
A PCR-based assay was used to detect mRNA-encoded transposase activity in medfly embryos The assay is based on the observation that after Minos excision the chromatid (or donor plasmid) can be re-ligated in the host cell (17, 22) Appropriate DNA primers were used (see Materials and Methods) which are expected to generate a 211 bp fragment after precise excision of the transposon As shown in Figure 2 under the PCR conditions that were used the full 2 2 Kb transposon sequence was recovered as well Non-injected Medfly embryos did not give any of these bands The full-length product was amplified from embryos that were injected with donor plasmids but no Minos transposase mRNA The embryos that were injected with the mRNA/donor mix gave the 211 bp excision band along with the full length transposon sequence These results were confirmed from one additional experiment with only donor injections and two additional experiments with mRNA/donor mix injections (data not shown) The results of the excision assay indicate that Minos transposase mRNA at a concentration of 100 micrograms per ml can be used as a source of active transposase in Medfly embryos
Example 4: Introduction of Minos into the C. capitata genome. A M/πos-based transposon (pMihsCcW) in combination with Minos transposase mRNA was microinjected into approximately 2400 medfly preblastoderm embryos 382 adults (GO generation) were collected and backcrossed to w Medflies Groups of 10 GO males were crossed to 20 w females whereas groups of 20 GO females were crossed to 10 w males (Summarised in Table 4) In total, 67,966 G1 flies were screened for the presence of a non-white phenotype (Table 5) A total of 665 flies with coloured eyes were recovered from 22 out of the 29 cages The frequency of transformants among the G1 flies varied between 7 437% and 0 055%, with only 3 of the cages giving one transformed fly Of the remaining 19 cages, 16 gave transformed progeny that varied in phenotype Phenotypic variations included a) degree of coloration (from pale yellow to almost wild type) and b) colour variegation Up to 8 different phenotypes were detectable in the G1 progeny of a single cage
Genetic and molecular analysis was performed to determine the basis of the observed phenotypes Twelve representative G1 male flies were backcrossed to w females and their progeny was scored for transmission of the eye colour phenotype and the presence of transposon sequences in their genome Of these G1 flies analysed, 6 were from different GO cages and 6 were from two cages that showed varying phenotypes In all crosses, the eye phenotypes were transmitted as single dominant loci No phenotypic variation was observed among the non-white progeny of each individual G1 Southern analysis of non-white G2 progeny from each cross was performed to define the molecular basis of these events In this analysis each insertion event is expected to give two chimeπc fragments, each consisting of one of the transposon ends plus genomic flanking sequences As shown in Figure 3, seven of the examined G2's contain a single, distinct insertion of the MihsCcw transposon In five cases pairs of (usually minor) bands were also detectable, indicating the presence of additional, segregating insertions These insertions are presumably silent, because of the single-locus inheritance character of the w+ phenotype in the corresponding crosses Southern analysis also showed that each of the two sibling G1 flies with different phenotypes that were analysed from GO cage C44 (C44 1 and C44 3), and the four sibling G1 flies from cage C53 (C53 1 , C53 2, C53 3, C53 4), contained distinct insertions This result strongly suggests that the different eye phenotypes that were detected derive from independent insertion events Table 1. Drosophila melanogaster germline transformation using M/nos-mRNA as a helper. An overview of the transformation experiment.
Varying injected Hatched SEX Adults Fertile G1 Noπ- non-white eye embryos larvae (crosses) GO's Progeny white phenotypes
(crosses) G1 's males 78 (78) 76 (76) 26,981 483 30
-800 299 females 76 (41 ) - (38) 1 1 ,471 208 30
Table 2. Drosophila melanogaster germline transformation using M/nos-mRNA as a helper. Presentation of the 35 GO crosses that had at least one transformant among their progeny.
GO Percentage GO Percentage of
MALES Total Non-white of Varying FEMALES Total Non-white Varying non-white
Vial G1's G1's non-white non-white eye Vial G1's G1's non-white eye
G1's
G1's phenotypes number phenotypes number
D3M:4 208 90 43.269% 3 D1 F:12 150 23 15.333% 2
D3M:45 199 54 27.136% 2 D3F: 14 204 26 12.745% 3
D1M:2 387 79 20.413% 1 D3F:3 406 36 8.867% 3
D3M:20 382 61 15.969% 3 D3F.6 249 22 8.835% 3
D1 M:33 276 43 15.580% 2 D1 F:4 152 13 8.553% 1
D1 M:5 296 36 12.162% 3 D1 F:16 200 13 6.500% 2
D1M.21 382 30 7.853% 1 D3F:11 479 30 6.263% 3
D1M:25 475 32 6.737% 1 D1 F:15 144 7 4.861% 2
D3M:36 312 13 4.167% 2 D1 F:20 447 19 4.251 % 2
D3M.35 368 15 4.076% 2 D1 F:13 176 7 3.977% 2
D3M:30 349 13 3.725% 2 D3F:4 270 6 2.222% 2
D3M:7 245 7 2.857% 1 D1 F:1 108 1 0.926%
D3M:6 207 2 0.966% 1 D3F:16* 196 1 0.510%
D3M:3 217 2 0.922% 1 D3F:9 503 2 0.398%
D1 M:24 421 2 0.475% 1 D1 F.14 279 1 0.358%
D1 M:3 292 1 0.342% 1 D3F:8 353 1 0.283%
D1 M:1 307 1 0.326% 1
D3M:1 379 1 0.264% 1
D3M:41 611 1 0.164% 1
D3F:16 has only one female GO
Table 3 Mobilization of a Minos chromosomal insertion by Minos- mRNA injected in preblastoderm C58 Drosophila embryos.
Figure imgf000016_0001
100 44 15 909 8,301 0 446 31 818 7,808 0 935
50 50 6.000 9,627 0.117 6.000 8,053 0 037
0 15 0 1.560 0 0 1 ,402 0
Table 4. Ceratitis capitata germline transformation using M/nos-mRNA as a helper. An overview of the transformation experiment.
Varying injected Hatched SEX Adults G1 Non-white non-white eye embryos larvae (crosses) Progeny G1s phenotypes males 202 (20) 53,666 57(5 38
-2400 592 females 180 (9) 14,300 89 23
Table 5. Ceratitis capitata germline transformation using M/nos-mRNA as a helper. Presentation of the 22 GO crosses that gave at least one transformant among their progeny.
GO Percentage Varying GO Percentage Varying
MALES Total Non-white of non-white FEMALES Total Non-white of non-white
Cage G1's G1's Non-white eye Cage G1's G1's non-white eye number G1's phenotypes number G1 's phenotypes
C39 3819 284 7.437% 2 C52 2017 50 2.479% 8
C53 1963 48 2.445% 5 C44 2019 25 1 .196% 5
C45 261 6 2.299% 2 C55 2434 6 0 247% 2
C47 2112 41 1.941% 5 C60 1068 2 0.187% 2
C46 3248 45 1.385% 3 C42 1802 3 0 166% 3
C51 2244 29 1.292% 6 C62 957 1 0.104% 1
C48 3623 43 1.187% 4 C66 1 190 1 0 084% 1
C38 4459 30 0.673% 1 C50 1822 1 0 055% 1
C58 3493 15 0.429% 2
C43 371 1 13 0.350% 2
C64 2716 9 0.331 % 2
C40 2718 8 0.294% 1
C59 2275 3 0.132% 1
C41 2432 2 0.082% 2
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ENGELS mobile DNA
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Claims

1 A method for genetically modifying a cell by transposon mobilisation comprising the steps of a) delivering to the cell a nucleic acid comprising a transposon of the TcMmanner class b) delivering to the cell a ribonucleic acid encoding a cognate transposase for said transposon, and c) causing the ribonucleic acid to be translated to produce the cognate transposase within the cell
2 A method for mobilising a transposon resident in a host cell genome comprising the steps of a) delivering to the cell a ribonucleic acid encoding a cognate transposase for said transposon, and b) causing the ribonucleic acid to be translated to produce the cognate transposase within the cell, thus mobilising the resident transposon
3 A method according to claim 1 or claim 2, wherein the transposon is selected from the group consisting of Minos, mariner, Hermes and piggyBac
4 A method according to claim 3, wherein the transposon is Minos
5 A method according to any one of claims 2 to 4, wherein the transposon comprises a nucleic acid sequence encoding a heterologous polypeptide
6 A method according to claim 5, wherein the heterologous polypeptide is a selectable marker
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FR2850668A1 (en) * 2003-01-31 2004-08-06 Centre Nat Rech Scient New isolated nucleic acid comprising mariner family mobile genetic elements, useful for e.g. therapeutic insertion of DNA into target nucleic acid, are derived from hydrothermal eukaryotes

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GB2387173A (en) * 2002-03-05 2003-10-08 Arrow Therapeutics Ltd Transposon
WO2003097826A1 (en) * 2002-05-16 2003-11-27 Minos Biosystems Limited Use of minos in functional genomics
FR2850668A1 (en) * 2003-01-31 2004-08-06 Centre Nat Rech Scient New isolated nucleic acid comprising mariner family mobile genetic elements, useful for e.g. therapeutic insertion of DNA into target nucleic acid, are derived from hydrothermal eukaryotes
WO2004078962A1 (en) * 2003-01-31 2004-09-16 Centre National De La Recherche Scientifique (Cnrs) Mobile genetic elements belonging to the mariner family in hydrothermal eukaryotes

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